Query 011235
Match_columns 490
No_of_seqs 167 out of 715
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 23:06:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02597 phosphoenolpyruvate c 100.0 2E-130 5E-135 1035.1 35.7 380 102-489 1-401 (555)
2 PTZ00311 phosphoenolpyruvate c 100.0 1E-125 3E-130 1004.0 34.5 357 131-489 31-411 (561)
3 cd00484 PEPCK_ATP Phosphoenolp 100.0 1E-125 3E-130 998.6 32.5 345 143-489 2-364 (508)
4 TIGR00224 pckA phosphoenolpyru 100.0 3E-125 7E-130 994.8 33.1 355 132-489 8-388 (532)
5 COG1866 PckA Phosphoenolpyruva 100.0 8E-122 2E-126 948.8 25.2 354 133-489 9-381 (529)
6 PF01293 PEPCK_ATP: Phosphoeno 100.0 2E-116 5E-121 927.2 28.5 346 142-489 2-365 (466)
7 PRK09344 phosphoenolpyruvate c 100.0 1E-114 2E-119 921.3 32.8 353 134-489 8-379 (526)
8 cd01919 PEPCK Phosphoenolpyruv 100.0 3.1E-99 7E-104 804.0 32.1 345 143-489 2-372 (515)
9 cd00819 PEPCK_GTP Phosphoenolp 99.9 1.3E-23 2.7E-28 225.1 23.5 319 140-468 13-412 (579)
10 PRK04210 phosphoenolpyruvate c 99.9 2.8E-22 6E-27 215.2 22.7 323 140-468 25-426 (601)
11 PF00821 PEPCK: Phosphoenolpyr 99.9 4.8E-21 1E-25 206.1 18.8 325 140-474 11-419 (586)
12 COG1274 PckA Phosphoenolpyruva 99.7 1.3E-16 2.9E-21 168.3 17.4 324 140-465 32-431 (608)
13 KOG3749 Phosphoenolpyruvate ca 99.0 1.2E-09 2.6E-14 115.9 11.6 240 209-460 155-459 (640)
14 cd01918 HprK_C HprK/P, the bif 98.0 3.8E-06 8.3E-11 78.1 2.5 45 322-367 3-50 (149)
15 cd00820 PEPCK_HprK Phosphoenol 97.7 8.9E-06 1.9E-10 71.9 0.2 50 320-369 1-53 (107)
16 PF07475 Hpr_kinase_C: HPr Ser 97.7 2.3E-05 4.9E-10 74.6 2.5 46 321-367 6-54 (171)
17 TIGR00679 hpr-ser Hpr(Ser) kin 97.5 5.2E-05 1.1E-09 77.9 2.8 73 292-367 106-182 (304)
18 PRK05428 HPr kinase/phosphoryl 97.3 0.00014 2.9E-09 75.1 2.7 46 321-367 134-182 (308)
19 COG1493 HprK Serine kinase of 97.3 0.00018 4E-09 73.8 3.1 74 292-368 105-182 (308)
20 PRK06217 hypothetical protein; 95.3 0.011 2.3E-07 55.4 2.4 35 336-370 3-41 (183)
21 PF13207 AAA_17: AAA domain; P 95.0 0.011 2.4E-07 50.6 1.4 17 336-352 1-17 (121)
22 PF13555 AAA_29: P-loop contai 94.7 0.019 4.1E-07 46.4 1.8 21 331-351 20-40 (62)
23 smart00382 AAA ATPases associa 94.6 0.016 3.4E-07 48.1 1.4 19 334-352 2-20 (148)
24 COG0396 sufC Cysteine desulfur 94.5 0.032 6.8E-07 56.1 3.3 21 332-352 28-48 (251)
25 PRK07261 topology modulation p 94.5 0.023 5E-07 53.1 2.3 32 336-367 2-37 (171)
26 PF13671 AAA_33: AAA domain; P 94.4 0.018 4E-07 50.4 1.4 17 336-352 1-17 (143)
27 COG4148 ModC ABC-type molybdat 94.3 0.046 1E-06 56.7 4.0 32 319-352 10-42 (352)
28 COG1136 SalX ABC-type antimicr 94.2 0.023 4.9E-07 56.6 1.8 21 332-352 29-49 (226)
29 KOG3354 Gluconate kinase [Carb 94.2 0.026 5.6E-07 54.0 1.9 36 330-365 8-48 (191)
30 COG0529 CysC Adenylylsulfate k 94.2 0.021 4.6E-07 55.4 1.3 21 332-352 21-41 (197)
31 COG0542 clpA ATP-binding subun 94.1 0.014 3E-07 66.9 -0.0 87 336-425 523-642 (786)
32 COG3839 MalK ABC-type sugar tr 94.0 0.025 5.5E-07 59.3 1.8 21 332-352 27-47 (338)
33 PRK08118 topology modulation p 94.0 0.025 5.3E-07 52.9 1.5 32 336-367 3-38 (167)
34 PF05673 DUF815: Protein of un 94.0 0.012 2.7E-07 59.2 -0.6 136 335-478 53-203 (249)
35 COG1126 GlnQ ABC-type polar am 94.0 0.028 6E-07 56.2 1.8 21 332-352 26-46 (240)
36 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.0 0.048 1E-06 52.7 3.4 47 303-352 19-66 (224)
37 TIGR01313 therm_gnt_kin carboh 93.8 0.026 5.6E-07 51.2 1.1 27 337-363 1-31 (163)
38 KOG0058 Peptide exporter, ABC 93.7 0.015 3.2E-07 65.9 -0.8 66 334-410 494-566 (716)
39 COG4136 ABC-type uncharacteriz 93.7 0.032 6.9E-07 53.5 1.5 21 332-352 26-46 (213)
40 COG1125 OpuBA ABC-type proline 93.6 0.021 4.5E-07 58.4 0.1 56 332-387 25-88 (309)
41 PRK09825 idnK D-gluconate kina 93.5 0.033 7.2E-07 52.5 1.4 20 333-352 2-21 (176)
42 TIGR03263 guanyl_kin guanylate 93.5 0.035 7.5E-07 51.0 1.4 19 334-352 1-19 (180)
43 COG4175 ProV ABC-type proline/ 93.5 0.031 6.8E-07 58.6 1.2 21 332-352 52-72 (386)
44 COG1116 TauB ABC-type nitrate/ 93.4 0.039 8.5E-07 55.7 1.8 21 332-352 27-47 (248)
45 COG1117 PstB ABC-type phosphat 93.4 0.038 8.3E-07 55.3 1.7 21 332-352 31-51 (253)
46 PRK00300 gmk guanylate kinase; 93.4 0.039 8.4E-07 51.9 1.7 21 332-352 3-23 (205)
47 TIGR02322 phosphon_PhnN phosph 93.3 0.037 8.1E-07 51.0 1.3 19 334-352 1-19 (179)
48 PRK08233 hypothetical protein; 93.2 0.042 9.1E-07 50.1 1.5 19 334-352 3-21 (182)
49 TIGR00235 udk uridine kinase. 93.1 0.037 8.1E-07 52.7 1.1 21 332-352 4-24 (207)
50 PF01583 APS_kinase: Adenylyls 93.1 0.036 7.8E-07 52.2 1.0 19 334-352 2-20 (156)
51 cd00227 CPT Chloramphenicol (C 93.1 0.042 9.2E-07 50.9 1.4 19 334-352 2-20 (175)
52 COG3840 ThiQ ABC-type thiamine 93.0 0.06 1.3E-06 53.0 2.2 32 320-352 12-43 (231)
53 PF13238 AAA_18: AAA domain; P 93.0 0.044 9.5E-07 46.6 1.2 16 337-352 1-16 (129)
54 COG4181 Predicted ABC-type tra 92.9 0.038 8.2E-07 53.9 0.8 41 332-372 34-83 (228)
55 PRK11174 cysteine/glutathione 92.8 0.018 4E-07 62.9 -1.8 21 332-352 374-394 (588)
56 PRK10078 ribose 1,5-bisphospho 92.7 0.054 1.2E-06 50.8 1.5 19 334-352 2-20 (186)
57 PRK05541 adenylylsulfate kinas 92.7 0.056 1.2E-06 49.9 1.6 21 332-352 5-25 (176)
58 cd03238 ABC_UvrA The excision 92.7 0.061 1.3E-06 51.1 1.8 21 332-352 19-39 (176)
59 PRK00131 aroK shikimate kinase 92.6 0.059 1.3E-06 48.5 1.5 19 334-352 4-22 (175)
60 PRK00889 adenylylsulfate kinas 92.4 0.062 1.3E-06 49.6 1.4 21 332-352 2-22 (175)
61 PRK05480 uridine/cytidine kina 92.4 0.065 1.4E-06 50.9 1.5 21 332-352 4-24 (209)
62 PF00005 ABC_tran: ABC transpo 92.4 0.076 1.7E-06 46.4 1.9 21 332-352 9-29 (137)
63 TIGR03797 NHPM_micro_ABC2 NHPM 92.3 0.025 5.4E-07 63.3 -1.6 21 332-352 477-497 (686)
64 cd03225 ABC_cobalt_CbiO_domain 92.3 0.072 1.6E-06 50.4 1.7 21 332-352 25-45 (211)
65 COG3842 PotA ABC-type spermidi 92.3 0.069 1.5E-06 56.4 1.7 21 332-352 29-49 (352)
66 PF03193 DUF258: Protein of un 92.2 0.079 1.7E-06 50.2 1.9 19 334-352 35-53 (161)
67 PF00004 AAA: ATPase family as 92.2 0.06 1.3E-06 46.0 1.0 16 337-352 1-16 (132)
68 cd00009 AAA The AAA+ (ATPases 92.2 0.073 1.6E-06 44.8 1.5 20 333-352 18-37 (151)
69 cd03270 ABC_UvrA_I The excisio 92.2 0.076 1.6E-06 51.7 1.8 20 332-351 19-38 (226)
70 COG0563 Adk Adenylate kinase a 92.2 0.059 1.3E-06 51.4 1.0 17 336-352 2-18 (178)
71 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.1 0.08 1.7E-06 50.3 1.8 21 332-352 28-48 (218)
72 COG1118 CysA ABC-type sulfate/ 92.1 0.099 2.1E-06 54.7 2.6 21 332-352 26-46 (345)
73 TIGR01166 cbiO cobalt transpor 92.1 0.082 1.8E-06 49.4 1.8 21 332-352 16-36 (190)
74 TIGR02673 FtsE cell division A 92.0 0.082 1.8E-06 50.1 1.8 21 332-352 26-46 (214)
75 TIGR00960 3a0501s02 Type II (G 92.0 0.084 1.8E-06 50.2 1.8 21 332-352 27-47 (216)
76 PRK06762 hypothetical protein; 91.9 0.071 1.5E-06 48.6 1.2 18 335-352 3-20 (166)
77 cd03269 ABC_putative_ATPase Th 91.9 0.085 1.8E-06 50.0 1.8 21 332-352 24-44 (210)
78 cd03265 ABC_DrrA DrrA is the A 91.9 0.088 1.9E-06 50.3 1.8 21 332-352 24-44 (220)
79 TIGR02315 ABC_phnC phosphonate 91.8 0.088 1.9E-06 50.9 1.8 21 332-352 26-46 (243)
80 COG4619 ABC-type uncharacteriz 91.8 0.078 1.7E-06 51.7 1.4 21 332-352 27-47 (223)
81 TIGR02880 cbbX_cfxQ probable R 91.8 0.082 1.8E-06 53.6 1.6 48 303-352 29-76 (284)
82 cd03226 ABC_cobalt_CbiO_domain 91.8 0.089 1.9E-06 49.7 1.8 21 332-352 24-44 (205)
83 cd03262 ABC_HisP_GlnQ_permease 91.8 0.091 2E-06 49.7 1.8 21 332-352 24-44 (213)
84 cd03260 ABC_PstB_phosphate_tra 91.8 0.09 1.9E-06 50.4 1.8 21 332-352 24-44 (227)
85 COG4525 TauB ABC-type taurine 91.8 0.091 2E-06 52.3 1.8 21 332-352 29-49 (259)
86 cd03292 ABC_FtsE_transporter F 91.8 0.091 2E-06 49.7 1.8 21 332-352 25-45 (214)
87 cd03261 ABC_Org_Solvent_Resist 91.7 0.093 2E-06 50.7 1.8 21 332-352 24-44 (235)
88 cd03219 ABC_Mj1267_LivG_branch 91.7 0.091 2E-06 50.6 1.7 21 332-352 24-44 (236)
89 cd03257 ABC_NikE_OppD_transpor 91.7 0.094 2E-06 50.0 1.8 21 332-352 29-49 (228)
90 cd03259 ABC_Carb_Solutes_like 91.6 0.096 2.1E-06 49.7 1.8 21 332-352 24-44 (213)
91 COG1124 DppF ABC-type dipeptid 91.6 0.084 1.8E-06 53.3 1.5 21 332-352 31-51 (252)
92 cd02019 NK Nucleoside/nucleoti 91.6 0.07 1.5E-06 42.7 0.7 16 337-352 2-17 (69)
93 PRK10070 glycine betaine trans 91.6 0.082 1.8E-06 56.4 1.4 21 332-352 52-72 (400)
94 cd03235 ABC_Metallic_Cations A 91.5 0.099 2.1E-06 49.6 1.8 21 332-352 23-43 (213)
95 TIGR00958 3a01208 Conjugate Tr 91.5 0.028 6E-07 63.5 -2.3 21 332-352 505-525 (711)
96 TIGR03796 NHPM_micro_ABC1 NHPM 91.5 0.032 7E-07 62.6 -1.8 21 332-352 503-523 (710)
97 cd03263 ABC_subfamily_A The AB 91.5 0.1 2.2E-06 49.7 1.8 21 332-352 26-46 (220)
98 TIGR03375 type_I_sec_LssB type 91.5 0.034 7.3E-07 62.4 -1.7 21 332-352 489-509 (694)
99 cd03224 ABC_TM1139_LivF_branch 91.4 0.098 2.1E-06 49.8 1.6 21 332-352 24-44 (222)
100 cd03258 ABC_MetN_methionine_tr 91.4 0.11 2.3E-06 50.1 1.8 21 332-352 29-49 (233)
101 cd03268 ABC_BcrA_bacitracin_re 91.3 0.11 2.3E-06 49.2 1.8 21 332-352 24-44 (208)
102 TIGR02204 MsbA_rel ABC transpo 91.3 0.03 6.5E-07 61.0 -2.3 21 332-352 364-384 (576)
103 cd03293 ABC_NrtD_SsuB_transpor 91.3 0.1 2.2E-06 49.9 1.6 21 332-352 28-48 (220)
104 TIGR02211 LolD_lipo_ex lipopro 91.3 0.11 2.4E-06 49.5 1.8 21 332-352 29-49 (221)
105 cd03266 ABC_NatA_sodium_export 91.3 0.11 2.4E-06 49.4 1.8 21 332-352 29-49 (218)
106 TIGR03608 L_ocin_972_ABC putat 91.3 0.11 2.3E-06 49.0 1.7 21 332-352 22-42 (206)
107 COG2274 SunT ABC-type bacterio 91.2 0.044 9.6E-07 62.5 -1.1 21 332-352 497-517 (709)
108 TIGR03410 urea_trans_UrtE urea 91.2 0.11 2.4E-06 49.8 1.8 21 332-352 24-44 (230)
109 cd03256 ABC_PhnC_transporter A 91.2 0.11 2.4E-06 50.0 1.8 21 332-352 25-45 (241)
110 PF00485 PRK: Phosphoribulokin 91.2 0.1 2.2E-06 49.3 1.4 17 336-352 1-17 (194)
111 TIGR02881 spore_V_K stage V sp 91.1 0.11 2.3E-06 51.6 1.6 43 303-352 13-60 (261)
112 PRK11124 artP arginine transpo 91.1 0.11 2.5E-06 50.3 1.8 21 332-352 26-46 (242)
113 COG4988 CydD ABC-type transpor 91.1 0.064 1.4E-06 59.6 0.0 21 332-352 345-365 (559)
114 TIGR01978 sufC FeS assembly AT 91.1 0.12 2.5E-06 50.0 1.8 21 332-352 24-44 (243)
115 cd03216 ABC_Carb_Monos_I This 91.1 0.12 2.5E-06 47.7 1.7 21 332-352 24-44 (163)
116 PRK03846 adenylylsulfate kinas 91.0 0.1 2.3E-06 49.4 1.4 21 332-352 22-42 (198)
117 cd03301 ABC_MalK_N The N-termi 91.0 0.12 2.6E-06 48.9 1.8 21 332-352 24-44 (213)
118 PF05496 RuvB_N: Holliday junc 91.0 0.099 2.1E-06 52.4 1.2 18 335-352 51-68 (233)
119 cd03218 ABC_YhbG The ABC trans 91.0 0.12 2.6E-06 49.6 1.7 21 332-352 24-44 (232)
120 cd03214 ABC_Iron-Siderophores_ 91.0 0.13 2.7E-06 48.0 1.8 21 332-352 23-43 (180)
121 PRK10908 cell division protein 90.9 0.12 2.7E-06 49.3 1.8 21 332-352 26-46 (222)
122 cd03230 ABC_DR_subfamily_A Thi 90.9 0.13 2.7E-06 47.7 1.7 21 332-352 24-44 (173)
123 TIGR01360 aden_kin_iso1 adenyl 90.9 0.11 2.5E-06 47.5 1.5 18 335-352 4-21 (188)
124 PRK15177 Vi polysaccharide exp 90.8 0.13 2.8E-06 49.6 1.8 21 332-352 11-31 (213)
125 PRK14738 gmk guanylate kinase; 90.8 0.12 2.5E-06 49.8 1.5 20 333-352 12-31 (206)
126 COG0194 Gmk Guanylate kinase [ 90.8 0.11 2.5E-06 50.5 1.4 20 333-352 3-22 (191)
127 cd03229 ABC_Class3 This class 90.8 0.13 2.9E-06 47.7 1.8 21 332-352 24-44 (178)
128 cd03264 ABC_drug_resistance_li 90.8 0.12 2.5E-06 49.1 1.4 18 334-352 26-43 (211)
129 cd02021 GntK Gluconate kinase 90.8 0.1 2.2E-06 46.7 1.0 16 337-352 2-17 (150)
130 cd03222 ABC_RNaseL_inhibitor T 90.8 0.12 2.7E-06 49.0 1.6 21 332-352 23-43 (177)
131 PRK13540 cytochrome c biogenes 90.8 0.13 2.9E-06 48.5 1.8 21 332-352 25-45 (200)
132 PRK11629 lolD lipoprotein tran 90.7 0.13 2.8E-06 49.7 1.8 21 332-352 33-53 (233)
133 cd03246 ABCC_Protease_Secretio 90.7 0.14 3E-06 47.4 1.8 21 332-352 26-46 (173)
134 TIGR00150 HI0065_YjeE ATPase, 90.7 0.13 2.9E-06 47.2 1.7 21 332-352 20-40 (133)
135 PRK13539 cytochrome c biogenes 90.6 0.14 3E-06 48.8 1.8 21 332-352 26-46 (207)
136 PRK10584 putative ABC transpor 90.6 0.14 3E-06 49.2 1.8 21 332-352 34-54 (228)
137 cd03295 ABC_OpuCA_Osmoprotecti 90.6 0.14 3E-06 49.8 1.8 21 332-352 25-45 (242)
138 PRK14527 adenylate kinase; Pro 90.5 0.13 2.9E-06 48.3 1.6 20 333-352 5-24 (191)
139 PRK10895 lipopolysaccharide AB 90.5 0.14 3E-06 49.6 1.8 21 332-352 27-47 (241)
140 PRK13538 cytochrome c biogenes 90.5 0.14 3.1E-06 48.5 1.8 21 332-352 25-45 (204)
141 cd03296 ABC_CysA_sulfate_impor 90.5 0.14 3.1E-06 49.6 1.8 21 332-352 26-46 (239)
142 TIGR02323 CP_lyasePhnK phospho 90.5 0.13 2.9E-06 50.1 1.7 21 332-352 27-47 (253)
143 PRK14267 phosphate ABC transpo 90.5 0.14 3.1E-06 49.9 1.8 21 332-352 28-48 (253)
144 TIGR03864 PQQ_ABC_ATP ABC tran 90.5 0.14 3.1E-06 49.5 1.8 21 332-352 25-45 (236)
145 cd03254 ABCC_Glucan_exporter_l 90.5 0.15 3.2E-06 48.9 1.8 21 332-352 27-47 (229)
146 PF13479 AAA_24: AAA domain 90.4 0.16 3.4E-06 49.1 2.1 28 334-361 3-30 (213)
147 PRK11248 tauB taurine transpor 90.4 0.14 3.1E-06 50.5 1.8 21 332-352 25-45 (255)
148 TIGR01359 UMP_CMP_kin_fam UMP- 90.4 0.1 2.2E-06 48.1 0.7 17 336-352 1-17 (183)
149 KOG0635 Adenosine 5'-phosphosu 90.4 0.085 1.8E-06 50.5 0.2 22 332-353 29-50 (207)
150 cd03223 ABCD_peroxisomal_ALDP 90.4 0.15 3.3E-06 47.1 1.8 21 332-352 25-45 (166)
151 PRK14247 phosphate ABC transpo 90.3 0.15 3.2E-06 49.7 1.8 21 332-352 27-47 (250)
152 cd02023 UMPK Uridine monophosp 90.3 0.11 2.5E-06 48.7 0.9 16 337-352 2-17 (198)
153 cd03245 ABCC_bacteriocin_expor 90.3 0.15 3.4E-06 48.5 1.8 21 332-352 28-48 (220)
154 cd03215 ABC_Carb_Monos_II This 90.3 0.15 3.3E-06 47.5 1.7 21 332-352 24-44 (182)
155 TIGR03265 PhnT2 putative 2-ami 90.3 0.15 3.2E-06 53.4 1.8 21 332-352 28-48 (353)
156 PF13401 AAA_22: AAA domain; P 90.2 0.13 2.9E-06 44.2 1.2 21 332-352 2-22 (131)
157 PRK10744 pstB phosphate transp 90.2 0.15 3.3E-06 50.2 1.8 21 332-352 37-57 (260)
158 PRK14242 phosphate transporter 90.2 0.15 3.2E-06 49.8 1.7 21 332-352 30-50 (253)
159 cd03298 ABC_ThiQ_thiamine_tran 90.2 0.16 3.4E-06 48.2 1.8 21 332-352 22-42 (211)
160 TIGR00972 3a0107s01c2 phosphat 90.2 0.16 3.4E-06 49.6 1.8 21 332-352 25-45 (247)
161 TIGR01189 ccmA heme ABC export 90.2 0.16 3.4E-06 47.9 1.8 21 332-352 24-44 (198)
162 cd03221 ABCF_EF-3 ABCF_EF-3 E 90.1 0.17 3.6E-06 45.9 1.8 21 332-352 24-44 (144)
163 cd03247 ABCC_cytochrome_bd The 90.1 0.16 3.6E-06 47.0 1.8 21 332-352 26-46 (178)
164 PRK11264 putative amino-acid A 90.1 0.16 3.5E-06 49.4 1.8 21 332-352 27-47 (250)
165 PRK06547 hypothetical protein; 90.1 0.13 2.8E-06 48.6 1.2 17 336-352 17-33 (172)
166 cd02027 APSK Adenosine 5'-phos 90.1 0.11 2.4E-06 47.4 0.7 17 336-352 1-17 (149)
167 PRK14241 phosphate transporter 90.1 0.16 3.4E-06 50.0 1.7 21 332-352 28-48 (258)
168 PRK14255 phosphate ABC transpo 90.1 0.16 3.5E-06 49.5 1.8 21 332-352 29-49 (252)
169 PRK11247 ssuB aliphatic sulfon 90.0 0.16 3.5E-06 50.5 1.8 21 332-352 36-56 (257)
170 PRK14273 phosphate ABC transpo 90.0 0.16 3.5E-06 49.6 1.8 21 332-352 31-51 (254)
171 TIGR03771 anch_rpt_ABC anchore 90.0 0.16 3.6E-06 48.9 1.8 21 332-352 4-24 (223)
172 PF07728 AAA_5: AAA domain (dy 90.0 0.14 3.1E-06 45.1 1.2 16 337-352 2-17 (139)
173 PRK03839 putative kinase; Prov 90.0 0.13 2.7E-06 47.7 0.9 17 336-352 2-18 (180)
174 PRK09183 transposase/IS protei 90.0 0.14 3.1E-06 51.2 1.4 20 333-352 101-120 (259)
175 TIGR01184 ntrCD nitrate transp 89.9 0.17 3.6E-06 49.1 1.8 21 332-352 9-29 (230)
176 PRK10247 putative ABC transpor 89.9 0.17 3.7E-06 48.8 1.8 21 332-352 31-51 (225)
177 cd00464 SK Shikimate kinase (S 89.9 0.13 2.9E-06 45.6 1.0 16 337-352 2-17 (154)
178 cd03231 ABC_CcmA_heme_exporter 89.9 0.17 3.7E-06 47.9 1.7 21 332-352 24-44 (201)
179 TIGR03005 ectoine_ehuA ectoine 89.9 0.17 3.7E-06 49.4 1.8 21 332-352 24-44 (252)
180 cd01120 RecA-like_NTPases RecA 89.8 0.12 2.6E-06 45.0 0.7 16 337-352 2-17 (165)
181 PRK13543 cytochrome c biogenes 89.8 0.18 3.8E-06 48.3 1.8 21 332-352 35-55 (214)
182 TIGR02324 CP_lyasePhnL phospho 89.8 0.18 3.8E-06 48.3 1.8 21 332-352 32-52 (224)
183 PRK13648 cbiO cobalt transport 89.8 0.17 3.7E-06 50.1 1.8 21 332-352 33-53 (269)
184 PRK14239 phosphate transporter 89.8 0.17 3.7E-06 49.2 1.8 21 332-352 29-49 (252)
185 PRK09493 glnQ glutamine ABC tr 89.8 0.17 3.8E-06 48.9 1.8 21 332-352 25-45 (240)
186 PRK10771 thiQ thiamine transpo 89.8 0.18 3.8E-06 48.7 1.8 21 332-352 23-43 (232)
187 TIGR02770 nickel_nikD nickel i 89.8 0.18 3.8E-06 48.8 1.8 21 332-352 10-30 (230)
188 cd03250 ABCC_MRP_domain1 Domai 89.8 0.18 4E-06 47.6 1.9 21 332-352 29-49 (204)
189 TIGR03411 urea_trans_UrtD urea 89.8 0.17 3.8E-06 48.9 1.8 21 332-352 26-46 (242)
190 TIGR03740 galliderm_ABC gallid 89.8 0.18 3.8E-06 48.3 1.8 21 332-352 24-44 (223)
191 PRK10575 iron-hydroxamate tran 89.7 0.18 3.9E-06 49.9 1.8 21 332-352 35-55 (265)
192 cd03252 ABCC_Hemolysin The ABC 89.7 0.18 3.9E-06 48.6 1.8 21 332-352 26-46 (237)
193 TIGR03238 dnd_assoc_3 dnd syst 89.7 0.17 3.7E-06 55.6 1.8 21 332-352 30-50 (504)
194 PRK14250 phosphate ABC transpo 89.7 0.18 3.9E-06 49.1 1.8 21 332-352 27-47 (241)
195 CHL00131 ycf16 sulfate ABC tra 89.7 0.18 3.9E-06 49.1 1.8 21 332-352 31-51 (252)
196 cd03249 ABC_MTABC3_MDL1_MDL2 M 89.7 0.19 4.1E-06 48.5 1.9 21 332-352 27-47 (238)
197 cd00071 GMPK Guanosine monopho 89.7 0.14 3.1E-06 46.2 0.9 16 337-352 2-17 (137)
198 cd03232 ABC_PDR_domain2 The pl 89.7 0.17 3.8E-06 47.6 1.6 21 332-352 31-51 (192)
199 cd03237 ABC_RNaseL_inhibitor_d 89.6 0.18 4E-06 49.8 1.8 21 332-352 23-43 (246)
200 cd03267 ABC_NatA_like Similar 89.6 0.27 5.9E-06 47.8 3.0 21 332-352 45-65 (236)
201 PRK11300 livG leucine/isoleuci 89.6 0.17 3.8E-06 49.3 1.6 21 332-352 29-49 (255)
202 PRK14274 phosphate ABC transpo 89.6 0.18 4E-06 49.5 1.8 21 332-352 36-56 (259)
203 PRK11432 fbpC ferric transport 89.6 0.18 3.9E-06 52.8 1.8 21 332-352 30-50 (351)
204 PRK14262 phosphate ABC transpo 89.6 0.18 4E-06 49.1 1.8 21 332-352 27-47 (250)
205 COG3638 ABC-type phosphate/pho 89.6 0.23 4.9E-06 50.4 2.4 21 332-352 28-48 (258)
206 PRK11831 putative ABC transpor 89.5 0.19 4E-06 50.0 1.8 21 332-352 31-51 (269)
207 PRK09452 potA putrescine/sperm 89.5 0.18 3.8E-06 53.4 1.7 21 332-352 38-58 (375)
208 PRK14530 adenylate kinase; Pro 89.5 0.17 3.6E-06 48.6 1.4 19 334-352 3-21 (215)
209 CHL00181 cbbX CbbX; Provisiona 89.5 0.17 3.7E-06 51.5 1.6 48 303-352 30-77 (287)
210 PRK14248 phosphate ABC transpo 89.5 0.19 4.1E-06 49.8 1.8 21 332-352 45-65 (268)
211 PRK13645 cbiO cobalt transport 89.5 0.18 3.9E-06 50.6 1.7 21 332-352 35-55 (289)
212 PRK13649 cbiO cobalt transport 89.5 0.18 4E-06 50.1 1.7 21 332-352 31-51 (280)
213 PF13191 AAA_16: AAA ATPase do 89.5 0.14 3E-06 46.5 0.7 21 332-352 22-42 (185)
214 PRK11650 ugpC glycerol-3-phosp 89.5 0.18 3.9E-06 52.8 1.7 21 332-352 28-48 (356)
215 TIGR03415 ABC_choXWV_ATP choli 89.5 0.16 3.5E-06 54.0 1.3 21 332-352 48-68 (382)
216 PTZ00301 uridine kinase; Provi 89.4 0.15 3.4E-06 49.7 1.1 17 336-352 5-21 (210)
217 PRK15056 manganese/iron transp 89.4 0.19 4.2E-06 50.0 1.8 21 332-352 31-51 (272)
218 PF01926 MMR_HSR1: 50S ribosom 89.4 0.18 3.9E-06 43.1 1.4 16 337-352 2-17 (116)
219 PRK14240 phosphate transporter 89.4 0.2 4.3E-06 48.9 1.8 21 332-352 27-47 (250)
220 cd04164 trmE TrmE (MnmE, ThdF, 89.4 0.19 4.1E-06 43.6 1.5 19 334-352 1-19 (157)
221 COG1127 Ttg2A ABC-type transpo 89.3 0.23 5.1E-06 50.4 2.3 30 323-352 22-52 (263)
222 PRK14259 phosphate ABC transpo 89.3 0.2 4.3E-06 49.9 1.8 21 332-352 37-57 (269)
223 PRK13541 cytochrome c biogenes 89.3 0.2 4.4E-06 47.1 1.8 21 332-352 24-44 (195)
224 cd03369 ABCC_NFT1 Domain 2 of 89.3 0.21 4.5E-06 47.3 1.8 21 332-352 32-52 (207)
225 cd03244 ABCC_MRP_domain2 Domai 89.2 0.21 4.5E-06 47.6 1.8 21 332-352 28-48 (221)
226 TIGR01277 thiQ thiamine ABC tr 89.2 0.2 4.3E-06 47.8 1.6 21 332-352 22-42 (213)
227 PF10662 PduV-EutP: Ethanolami 89.2 0.16 3.5E-06 47.3 1.0 18 335-352 2-19 (143)
228 cd03251 ABCC_MsbA MsbA is an e 89.2 0.21 4.6E-06 48.0 1.8 21 332-352 26-46 (234)
229 PRK14256 phosphate ABC transpo 89.2 0.21 4.5E-06 48.9 1.8 21 332-352 28-48 (252)
230 PRK11607 potG putrescine trans 89.2 0.2 4.3E-06 53.0 1.8 21 332-352 43-63 (377)
231 PRK11701 phnK phosphonate C-P 89.2 0.2 4.3E-06 49.2 1.7 21 332-352 30-50 (258)
232 cd03228 ABCC_MRP_Like The MRP 89.2 0.22 4.7E-06 46.0 1.8 21 332-352 26-46 (171)
233 PF00448 SRP54: SRP54-type pro 89.2 0.16 3.4E-06 49.0 1.0 18 335-352 2-19 (196)
234 PRK06696 uridine kinase; Valid 89.2 0.17 3.7E-06 49.0 1.2 18 335-352 23-40 (223)
235 PRK11144 modC molybdate transp 89.2 0.2 4.4E-06 52.1 1.8 21 332-352 22-42 (352)
236 cd01876 YihA_EngB The YihA (En 89.1 0.17 3.7E-06 43.9 1.1 16 337-352 2-17 (170)
237 PRK13632 cbiO cobalt transport 89.1 0.21 4.5E-06 49.7 1.8 21 332-352 33-53 (271)
238 cd03290 ABCC_SUR1_N The SUR do 89.1 0.21 4.6E-06 47.6 1.8 21 332-352 25-45 (218)
239 cd03248 ABCC_TAP TAP, the Tran 89.1 0.21 4.6E-06 47.8 1.8 21 332-352 38-58 (226)
240 PRK10619 histidine/lysine/argi 89.1 0.21 4.5E-06 49.0 1.8 21 332-352 29-49 (257)
241 PRK13548 hmuV hemin importer A 89.1 0.21 4.5E-06 49.4 1.7 21 332-352 26-46 (258)
242 cd03234 ABCG_White The White s 89.1 0.2 4.4E-06 48.2 1.6 21 332-352 31-51 (226)
243 PRK13638 cbiO cobalt transport 89.1 0.21 4.5E-06 49.6 1.8 21 332-352 25-45 (271)
244 PRK13547 hmuV hemin importer A 89.1 0.21 4.5E-06 50.1 1.8 21 332-352 25-45 (272)
245 cd03233 ABC_PDR_domain1 The pl 89.1 0.21 4.6E-06 47.5 1.7 21 332-352 31-51 (202)
246 PRK11545 gntK gluconate kinase 89.1 0.11 2.3E-06 48.3 -0.3 13 340-352 1-13 (163)
247 PRK15112 antimicrobial peptide 89.0 0.21 4.6E-06 49.5 1.8 21 332-352 37-57 (267)
248 PRK10851 sulfate/thiosulfate t 89.0 0.21 4.5E-06 52.3 1.8 21 332-352 26-46 (353)
249 PRK14261 phosphate ABC transpo 89.0 0.22 4.7E-06 48.8 1.8 21 332-352 30-50 (253)
250 TIGR02769 nickel_nikE nickel i 89.0 0.22 4.7E-06 49.3 1.8 21 332-352 35-55 (265)
251 TIGR02639 ClpA ATP-dependent C 89.0 0.36 7.8E-06 55.1 3.8 82 336-420 486-595 (731)
252 PRK14270 phosphate ABC transpo 88.9 0.22 4.8E-06 48.6 1.8 21 332-352 28-48 (251)
253 COG4161 ArtP ABC-type arginine 88.9 0.23 5E-06 48.3 1.9 21 332-352 26-46 (242)
254 PRK09984 phosphonate/organopho 88.9 0.22 4.7E-06 49.1 1.8 21 332-352 28-48 (262)
255 PRK15093 antimicrobial peptide 88.9 0.22 4.7E-06 51.4 1.8 21 332-352 31-51 (330)
256 PRK11000 maltose/maltodextrin 88.9 0.21 4.5E-06 52.5 1.7 21 332-352 27-47 (369)
257 TIGR02868 CydC thiol reductant 88.9 0.21 4.5E-06 54.1 1.8 21 332-352 359-379 (529)
258 PRK11614 livF leucine/isoleuci 88.9 0.21 4.7E-06 48.2 1.7 21 332-352 29-49 (237)
259 PRK14237 phosphate transporter 88.9 0.22 4.8E-06 49.4 1.8 21 332-352 44-64 (267)
260 PRK14253 phosphate ABC transpo 88.9 0.23 4.9E-06 48.4 1.8 21 332-352 27-47 (249)
261 PRK09544 znuC high-affinity zi 88.8 0.22 4.9E-06 49.2 1.8 21 332-352 28-48 (251)
262 PRK14272 phosphate ABC transpo 88.8 0.23 4.9E-06 48.4 1.8 21 332-352 28-48 (252)
263 PRK14531 adenylate kinase; Pro 88.8 0.18 3.8E-06 47.3 1.0 17 336-352 4-20 (183)
264 TIGR01188 drrA daunorubicin re 88.8 0.22 4.9E-06 50.4 1.8 21 332-352 17-37 (302)
265 TIGR03499 FlhF flagellar biosy 88.8 0.19 4.2E-06 50.8 1.3 21 332-352 192-212 (282)
266 PRK10418 nikD nickel transport 88.8 0.23 5E-06 48.8 1.8 21 332-352 27-47 (254)
267 KOG4238 Bifunctional ATP sulfu 88.7 0.16 3.4E-06 54.2 0.7 35 333-367 49-83 (627)
268 TIGR01186 proV glycine betaine 88.7 0.21 4.6E-06 52.6 1.6 21 332-352 17-37 (363)
269 PRK14245 phosphate ABC transpo 88.7 0.23 4.9E-06 48.5 1.7 21 332-352 27-47 (250)
270 PRK09580 sufC cysteine desulfu 88.7 0.23 5E-06 48.1 1.8 21 332-352 25-45 (248)
271 cd03294 ABC_Pro_Gly_Bertaine T 88.7 0.23 5E-06 49.4 1.8 21 332-352 48-68 (269)
272 cd00267 ABC_ATPase ABC (ATP-bi 88.7 0.24 5.3E-06 44.8 1.8 21 332-352 23-43 (157)
273 PRK14251 phosphate ABC transpo 88.7 0.24 5.1E-06 48.3 1.8 21 332-352 28-48 (251)
274 KOG0055 Multidrug/pheromone ex 88.7 0.079 1.7E-06 63.4 -1.8 20 333-352 1015-1034(1228)
275 PRK10253 iron-enterobactin tra 88.6 0.24 5.2E-06 49.1 1.8 21 332-352 31-51 (265)
276 TIGR02142 modC_ABC molybdenum 88.6 0.23 5E-06 51.7 1.8 21 332-352 21-41 (354)
277 PRK10419 nikE nickel transport 88.6 0.24 5.2E-06 49.3 1.8 21 332-352 36-56 (268)
278 PRK00698 tmk thymidylate kinas 88.6 0.2 4.3E-06 46.7 1.2 19 334-352 3-21 (205)
279 PF00910 RNA_helicase: RNA hel 88.6 0.16 3.4E-06 43.9 0.4 17 337-353 1-17 (107)
280 cd03300 ABC_PotA_N PotA is an 88.6 0.24 5.3E-06 47.8 1.8 21 332-352 24-44 (232)
281 PRK14244 phosphate ABC transpo 88.6 0.24 5.3E-06 48.4 1.8 21 332-352 29-49 (251)
282 TIGR00968 3a0106s01 sulfate AB 88.6 0.24 5.3E-06 48.1 1.8 21 332-352 24-44 (237)
283 TIGR01288 nodI ATP-binding ABC 88.6 0.24 5.1E-06 50.3 1.8 21 332-352 28-48 (303)
284 PRK14235 phosphate transporter 88.5 0.24 5.3E-06 49.1 1.8 21 332-352 43-63 (267)
285 cd03240 ABC_Rad50 The catalyti 88.5 0.25 5.4E-06 47.5 1.8 33 320-352 8-40 (204)
286 PRK14269 phosphate ABC transpo 88.5 0.25 5.3E-06 48.3 1.8 21 332-352 26-46 (246)
287 PRK13647 cbiO cobalt transport 88.5 0.24 5.2E-06 49.5 1.7 21 332-352 29-49 (274)
288 PRK14238 phosphate transporter 88.5 0.25 5.3E-06 49.3 1.8 21 332-352 48-68 (271)
289 PRK14268 phosphate ABC transpo 88.4 0.25 5.4E-06 48.6 1.8 21 332-352 36-56 (258)
290 cd03217 ABC_FeS_Assembly ABC-t 88.4 0.26 5.6E-06 46.8 1.8 21 332-352 24-44 (200)
291 PRK11231 fecE iron-dicitrate t 88.4 0.25 5.5E-06 48.4 1.8 21 332-352 26-46 (255)
292 cd03253 ABCC_ATM1_transporter 88.4 0.26 5.6E-06 47.5 1.8 21 332-352 25-45 (236)
293 PRK14249 phosphate ABC transpo 88.3 0.26 5.6E-06 48.2 1.8 21 332-352 28-48 (251)
294 TIGR00455 apsK adenylylsulfate 88.3 0.23 5.1E-06 46.2 1.5 21 332-352 16-36 (184)
295 PRK14737 gmk guanylate kinase; 88.3 0.23 4.9E-06 47.4 1.4 20 333-352 3-22 (186)
296 smart00072 GuKc Guanylate kina 88.3 0.24 5.1E-06 46.5 1.5 19 334-352 2-20 (184)
297 PRK13646 cbiO cobalt transport 88.3 0.25 5.4E-06 49.7 1.7 21 332-352 31-51 (286)
298 cd03213 ABCG_EPDR ABCG transpo 88.3 0.26 5.7E-06 46.6 1.8 21 332-352 33-53 (194)
299 COG4618 ArpD ABC-type protease 88.3 0.17 3.7E-06 55.9 0.6 67 332-409 360-434 (580)
300 PRK14243 phosphate transporter 88.3 0.26 5.6E-06 48.8 1.8 21 332-352 34-54 (264)
301 PF08477 Miro: Miro-like prote 88.3 0.23 5E-06 42.0 1.2 16 337-352 2-17 (119)
302 PRK05057 aroK shikimate kinase 88.2 0.24 5.3E-06 46.3 1.5 18 335-352 5-22 (172)
303 PF01695 IstB_IS21: IstB-like 88.2 0.24 5.3E-06 46.9 1.5 20 333-352 46-65 (178)
304 TIGR03420 DnaA_homol_Hda DnaA 88.2 0.25 5.4E-06 46.8 1.6 19 334-352 38-56 (226)
305 TIGR03873 F420-0_ABC_ATP propo 88.2 0.26 5.7E-06 48.3 1.8 21 332-352 25-45 (256)
306 PRK14722 flhF flagellar biosyn 88.1 0.23 5E-06 52.9 1.4 21 332-352 135-155 (374)
307 PRK11153 metN DL-methionine tr 88.1 0.26 5.6E-06 51.2 1.8 21 332-352 29-49 (343)
308 PRK13651 cobalt transporter AT 88.1 0.25 5.5E-06 50.5 1.7 21 332-352 31-51 (305)
309 PF07724 AAA_2: AAA domain (Cd 88.1 0.23 4.9E-06 46.9 1.2 17 336-352 5-21 (171)
310 cd04159 Arl10_like Arl10-like 88.1 0.23 5E-06 42.8 1.2 16 337-352 2-17 (159)
311 cd01130 VirB11-like_ATPase Typ 88.1 0.26 5.7E-06 46.4 1.6 21 332-352 23-43 (186)
312 PRK13635 cbiO cobalt transport 88.0 0.27 5.9E-06 49.3 1.8 21 332-352 31-51 (279)
313 PRK14266 phosphate ABC transpo 88.0 0.28 6.1E-06 47.8 1.8 21 332-352 27-47 (250)
314 PRK14252 phosphate ABC transpo 88.0 0.28 6E-06 48.5 1.8 21 332-352 40-60 (265)
315 PRK11308 dppF dipeptide transp 88.0 0.26 5.6E-06 51.0 1.6 21 332-352 39-59 (327)
316 PRK13634 cbiO cobalt transport 87.9 0.27 5.8E-06 49.6 1.7 21 332-352 31-51 (290)
317 TIGR03258 PhnT 2-aminoethylpho 87.9 0.27 5.9E-06 51.7 1.8 21 332-352 29-49 (362)
318 cd03283 ABC_MutS-like MutS-lik 87.9 0.26 5.7E-06 47.3 1.6 19 334-352 25-43 (199)
319 PRK14260 phosphate ABC transpo 87.9 0.28 6E-06 48.4 1.8 21 332-352 31-51 (259)
320 PRK11022 dppD dipeptide transp 87.9 0.27 5.8E-06 50.8 1.7 21 332-352 31-51 (326)
321 PRK03695 vitamin B12-transport 87.9 0.28 6.1E-06 48.1 1.8 21 332-352 20-40 (248)
322 PRK14265 phosphate ABC transpo 87.9 0.28 6.1E-06 49.0 1.8 21 332-352 44-64 (274)
323 PRK14275 phosphate ABC transpo 87.9 0.28 6.1E-06 49.4 1.8 21 332-352 63-83 (286)
324 TIGR02982 heterocyst_DevA ABC 87.8 0.29 6.3E-06 46.9 1.8 21 332-352 29-49 (220)
325 PRK08533 flagellar accessory p 87.8 0.28 6E-06 48.2 1.7 21 332-352 22-42 (230)
326 TIGR03345 VI_ClpV1 type VI sec 87.8 0.2 4.4E-06 58.3 0.8 83 336-420 598-710 (852)
327 PRK14254 phosphate ABC transpo 87.7 0.29 6.3E-06 49.3 1.8 21 332-352 63-83 (285)
328 PRK14532 adenylate kinase; Pro 87.7 0.23 4.9E-06 46.3 1.0 17 336-352 2-18 (188)
329 cd03236 ABC_RNaseL_inhibitor_d 87.7 0.3 6.5E-06 48.7 1.8 21 332-352 24-44 (255)
330 TIGR01618 phage_P_loop phage n 87.6 0.39 8.4E-06 47.6 2.6 29 330-358 8-37 (220)
331 cd04155 Arl3 Arl3 subfamily. 87.6 0.27 5.8E-06 44.1 1.4 18 335-352 15-32 (173)
332 PRK13650 cbiO cobalt transport 87.6 0.29 6.3E-06 49.1 1.7 21 332-352 31-51 (279)
333 COG4778 PhnL ABC-type phosphon 87.6 0.31 6.7E-06 47.8 1.8 38 315-352 15-55 (235)
334 cd01428 ADK Adenylate kinase ( 87.6 0.23 5.1E-06 45.8 0.9 16 337-352 2-17 (194)
335 PRK13640 cbiO cobalt transport 87.6 0.3 6.4E-06 49.1 1.7 21 332-352 31-51 (282)
336 COG4608 AppF ABC-type oligopep 87.6 0.3 6.4E-06 50.0 1.7 21 332-352 37-57 (268)
337 PRK14236 phosphate transporter 87.5 0.3 6.5E-06 48.6 1.8 21 332-352 49-69 (272)
338 cd02028 UMPK_like Uridine mono 87.5 0.23 5E-06 46.8 0.9 16 337-352 2-17 (179)
339 PRK08356 hypothetical protein; 87.5 0.28 6.2E-06 46.4 1.5 20 333-352 4-23 (195)
340 PRK13639 cbiO cobalt transport 87.5 0.3 6.5E-06 48.8 1.7 21 332-352 26-46 (275)
341 PRK02496 adk adenylate kinase; 87.5 0.24 5.2E-06 46.1 1.0 17 336-352 3-19 (184)
342 TIGR02314 ABC_MetN D-methionin 87.5 0.3 6.4E-06 51.1 1.7 21 332-352 29-49 (343)
343 PRK14271 phosphate ABC transpo 87.5 0.31 6.7E-06 48.9 1.8 21 332-352 45-65 (276)
344 PRK09473 oppD oligopeptide tra 87.4 0.28 6.1E-06 50.7 1.6 21 332-352 40-60 (330)
345 cd03271 ABC_UvrA_II The excisi 87.4 0.29 6.3E-06 49.4 1.6 21 332-352 19-39 (261)
346 cd03279 ABC_sbcCD SbcCD and ot 87.4 0.31 6.6E-06 46.8 1.7 20 333-352 27-46 (213)
347 PRK13641 cbiO cobalt transport 87.4 0.3 6.6E-06 49.1 1.7 21 332-352 31-51 (287)
348 PRK13637 cbiO cobalt transport 87.3 0.31 6.6E-06 49.2 1.7 21 332-352 31-51 (287)
349 PRK13652 cbiO cobalt transport 87.3 0.31 6.8E-06 48.7 1.8 21 332-352 28-48 (277)
350 cd02020 CMPK Cytidine monophos 87.3 0.25 5.4E-06 43.2 1.0 16 337-352 2-17 (147)
351 PHA00729 NTP-binding motif con 87.3 0.25 5.4E-06 49.3 1.0 17 336-352 19-35 (226)
352 COG4555 NatA ABC-type Na+ tran 87.3 0.26 5.7E-06 49.2 1.2 21 332-352 26-46 (245)
353 COG1131 CcmA ABC-type multidru 87.3 0.3 6.6E-06 49.7 1.7 21 332-352 29-49 (293)
354 cd02025 PanK Pantothenate kina 87.2 0.24 5.1E-06 48.4 0.8 16 337-352 2-17 (220)
355 PRK13633 cobalt transporter AT 87.2 0.32 7E-06 48.7 1.8 21 332-352 34-54 (280)
356 PRK08084 DNA replication initi 87.2 0.28 6.1E-06 48.1 1.3 18 335-352 46-63 (235)
357 PRK06893 DNA replication initi 87.2 0.24 5.1E-06 48.4 0.8 18 335-352 40-57 (229)
358 CHL00095 clpC Clp protease ATP 87.2 0.59 1.3E-05 54.2 4.1 17 336-352 541-557 (821)
359 PRK15079 oligopeptide ABC tran 87.1 0.32 7E-06 50.4 1.8 21 332-352 45-65 (331)
360 cd03272 ABC_SMC3_euk Eukaryoti 87.1 0.36 7.7E-06 46.7 2.0 20 333-352 22-41 (243)
361 PRK13644 cbiO cobalt transport 87.0 0.33 7.2E-06 48.5 1.7 21 332-352 26-46 (274)
362 PRK11176 lipid transporter ATP 86.9 0.33 7.2E-06 53.1 1.8 21 332-352 367-387 (582)
363 TIGR02237 recomb_radB DNA repa 86.9 0.29 6.3E-06 46.2 1.2 21 332-352 10-30 (209)
364 cd01672 TMPK Thymidine monopho 86.9 0.27 5.9E-06 45.0 1.0 17 336-352 2-18 (200)
365 cd03299 ABC_ModC_like Archeal 86.9 0.35 7.6E-06 46.9 1.8 21 332-352 23-43 (235)
366 PRK06526 transposase; Provisio 86.8 0.29 6.4E-06 49.1 1.2 20 333-352 97-116 (254)
367 TIGR00635 ruvB Holliday juncti 86.8 0.29 6.2E-06 49.0 1.2 18 335-352 31-48 (305)
368 PRK13642 cbiO cobalt transport 86.8 0.35 7.5E-06 48.4 1.7 21 332-352 31-51 (277)
369 PRK13636 cbiO cobalt transport 86.8 0.35 7.6E-06 48.6 1.8 21 332-352 30-50 (283)
370 PRK13631 cbiO cobalt transport 86.8 0.35 7.5E-06 49.9 1.8 21 332-352 50-70 (320)
371 TIGR00231 small_GTP small GTP- 86.7 0.33 7.2E-06 41.1 1.3 17 336-352 3-19 (161)
372 PRK12726 flagellar biosynthesi 86.7 0.46 1E-05 51.2 2.7 43 303-352 182-224 (407)
373 PF13476 AAA_23: AAA domain; P 86.7 0.31 6.7E-06 44.4 1.2 23 330-352 15-37 (202)
374 cd01394 radB RadB. The archaea 86.7 0.31 6.6E-06 46.5 1.2 20 333-352 18-37 (218)
375 PF05729 NACHT: NACHT domain 86.7 0.31 6.7E-06 43.0 1.2 18 335-352 1-18 (166)
376 PHA02530 pseT polynucleotide k 86.7 0.28 6E-06 49.0 1.0 17 336-352 4-20 (300)
377 cd03297 ABC_ModC_molybdenum_tr 86.6 0.32 6.9E-06 46.3 1.3 18 335-352 24-41 (214)
378 PRK01184 hypothetical protein; 86.5 0.31 6.7E-06 45.2 1.2 17 336-352 3-19 (184)
379 PRK13546 teichoic acids export 86.5 0.37 8.1E-06 48.2 1.8 21 332-352 48-68 (264)
380 cd03288 ABCC_SUR2 The SUR doma 86.5 0.38 8.2E-06 47.4 1.8 21 332-352 45-65 (257)
381 PRK14258 phosphate ABC transpo 86.5 0.38 8.1E-06 47.6 1.8 21 332-352 31-51 (261)
382 PRK06620 hypothetical protein; 86.5 0.3 6.4E-06 47.6 1.0 18 335-352 45-62 (214)
383 PRK12339 2-phosphoglycerate ki 86.5 0.32 7E-06 47.0 1.3 19 334-352 3-21 (197)
384 PRK13643 cbiO cobalt transport 86.5 0.36 7.8E-06 48.7 1.7 21 332-352 30-50 (288)
385 COG1120 FepC ABC-type cobalami 86.4 0.38 8.2E-06 48.9 1.8 21 332-352 26-46 (258)
386 cd04160 Arfrp1 Arfrp1 subfamil 86.4 0.33 7.1E-06 43.2 1.2 16 337-352 2-17 (167)
387 PRK13947 shikimate kinase; Pro 86.4 0.3 6.5E-06 44.5 1.0 28 336-363 3-34 (171)
388 PRK14246 phosphate ABC transpo 86.4 0.39 8.4E-06 47.6 1.8 21 332-352 34-54 (257)
389 PRK13975 thymidylate kinase; P 86.4 0.33 7.2E-06 45.2 1.2 18 335-352 3-20 (196)
390 PRK10938 putative molybdenum t 86.2 0.38 8.2E-06 51.8 1.8 21 332-352 27-47 (490)
391 cd02024 NRK1 Nicotinamide ribo 86.2 0.3 6.6E-06 47.0 0.9 16 337-352 2-17 (187)
392 cd03278 ABC_SMC_barmotin Barmo 86.0 0.38 8.1E-06 46.1 1.5 18 334-352 23-40 (197)
393 PRK08903 DnaA regulatory inact 86.0 0.37 8E-06 46.3 1.4 19 334-352 42-60 (227)
394 TIGR03269 met_CoM_red_A2 methy 86.0 0.39 8.5E-06 52.1 1.8 21 332-352 24-44 (520)
395 TIGR01351 adk adenylate kinase 86.0 0.32 6.9E-06 46.5 0.9 16 337-352 2-17 (210)
396 PF09439 SRPRB: Signal recogni 85.9 0.38 8.3E-06 46.4 1.5 19 334-352 3-21 (181)
397 PRK13537 nodulation ABC transp 85.9 0.4 8.7E-06 48.9 1.7 21 332-352 31-51 (306)
398 cd04163 Era Era subfamily. Er 85.8 0.39 8.4E-06 41.5 1.4 18 335-352 4-21 (168)
399 PF00625 Guanylate_kin: Guanyl 85.8 0.39 8.5E-06 44.8 1.5 19 334-352 2-20 (183)
400 COG1132 MdlB ABC-type multidru 85.8 0.47 1E-05 52.0 2.3 21 332-352 353-373 (567)
401 PRK10762 D-ribose transporter 85.8 0.39 8.5E-06 51.9 1.6 21 332-352 28-48 (501)
402 PRK13657 cyclic beta-1,2-gluca 85.8 0.41 8.9E-06 52.7 1.8 21 332-352 359-379 (588)
403 cd01131 PilT Pilus retraction 85.8 0.35 7.6E-06 46.2 1.1 17 336-352 3-19 (198)
404 PRK14263 phosphate ABC transpo 85.7 0.43 9.3E-06 47.4 1.8 21 332-352 32-52 (261)
405 cd00876 Ras Ras family. The R 85.7 0.36 7.8E-06 42.1 1.1 16 337-352 2-17 (160)
406 PRK04040 adenylate kinase; Pro 85.7 0.38 8.2E-06 46.0 1.3 18 335-352 3-20 (188)
407 PRK14264 phosphate ABC transpo 85.7 0.43 9.4E-06 48.5 1.8 21 332-352 69-89 (305)
408 cd04156 ARLTS1 ARLTS1 subfamil 85.6 0.37 8E-06 42.6 1.1 16 337-352 2-17 (160)
409 PRK09700 D-allose transporter 85.6 0.42 9E-06 51.8 1.7 21 332-352 29-49 (510)
410 TIGR03522 GldA_ABC_ATP gliding 85.6 0.41 8.8E-06 48.6 1.5 21 332-352 26-46 (301)
411 TIGR02857 CydD thiol reductant 85.5 0.44 9.5E-06 51.6 1.8 21 332-352 346-366 (529)
412 PRK09700 D-allose transporter 85.4 0.43 9.4E-06 51.6 1.7 21 332-352 287-307 (510)
413 COG1123 ATPase components of v 85.3 0.42 9.1E-06 53.2 1.6 21 332-352 315-335 (539)
414 PF13173 AAA_14: AAA domain 85.2 0.45 9.9E-06 41.9 1.5 20 333-352 1-20 (128)
415 PF00025 Arf: ADP-ribosylation 85.2 0.46 1E-05 44.1 1.6 18 335-352 15-32 (175)
416 PRK10522 multidrug transporter 85.2 0.45 9.8E-06 52.0 1.8 21 332-352 347-367 (547)
417 PRK09270 nucleoside triphospha 85.2 0.39 8.5E-06 46.6 1.2 19 334-352 33-51 (229)
418 PRK09361 radB DNA repair and r 85.2 0.42 9E-06 45.9 1.3 21 332-352 21-41 (225)
419 TIGR03574 selen_PSTK L-seryl-t 85.1 0.36 7.9E-06 47.3 0.9 16 337-352 2-17 (249)
420 cd03289 ABCC_CFTR2 The CFTR su 85.1 0.48 1E-05 47.9 1.8 21 332-352 28-48 (275)
421 COG2607 Predicted ATPase (AAA+ 85.1 0.31 6.7E-06 49.7 0.4 131 335-475 86-232 (287)
422 PRK09087 hypothetical protein; 85.1 0.4 8.6E-06 47.1 1.2 19 334-352 44-62 (226)
423 TIGR03269 met_CoM_red_A2 methy 85.1 0.47 1E-05 51.5 1.8 21 332-352 308-328 (520)
424 PF13086 AAA_11: AAA domain; P 85.1 0.36 7.8E-06 44.8 0.8 17 336-352 19-35 (236)
425 PRK03731 aroL shikimate kinase 85.0 0.42 9E-06 43.7 1.2 30 335-364 3-36 (171)
426 COG2255 RuvB Holliday junction 85.0 0.37 8.1E-06 50.1 1.0 119 335-474 53-188 (332)
427 smart00175 RAB Rab subfamily o 85.0 0.41 8.9E-06 42.1 1.1 17 336-352 2-18 (164)
428 PRK10982 galactose/methyl gala 85.0 0.46 1E-05 51.2 1.7 21 332-352 22-42 (491)
429 TIGR03015 pepcterm_ATPase puta 85.0 0.46 1E-05 46.2 1.6 39 300-352 23-61 (269)
430 PLN02165 adenylate isopentenyl 85.0 0.55 1.2E-05 49.4 2.2 31 333-363 42-76 (334)
431 PRK10938 putative molybdenum t 85.0 0.47 1E-05 51.0 1.7 21 332-352 284-304 (490)
432 cd01123 Rad51_DMC1_radA Rad51_ 84.9 0.43 9.3E-06 45.7 1.3 21 332-352 17-37 (235)
433 PRK15134 microcin C ABC transp 84.9 0.46 9.9E-06 51.8 1.7 21 332-352 33-53 (529)
434 COG1100 GTPase SAR1 and relate 84.9 0.4 8.8E-06 44.9 1.1 18 335-352 6-23 (219)
435 cd03291 ABCC_CFTR1 The CFTR su 84.9 0.5 1.1E-05 47.9 1.8 21 332-352 61-81 (282)
436 TIGR00041 DTMP_kinase thymidyl 84.9 0.42 9.2E-06 44.4 1.2 19 334-352 3-21 (195)
437 cd04123 Rab21 Rab21 subfamily. 84.9 0.46 9.9E-06 41.5 1.3 17 336-352 2-18 (162)
438 cd04138 H_N_K_Ras_like H-Ras/N 84.9 0.42 9E-06 41.8 1.1 17 336-352 3-19 (162)
439 cd01393 recA_like RecA is a b 84.8 0.5 1.1E-05 45.0 1.7 21 332-352 17-37 (226)
440 TIGR02203 MsbA_lipidA lipid A 84.8 0.49 1.1E-05 51.5 1.8 21 332-352 356-376 (571)
441 TIGR02633 xylG D-xylose ABC tr 84.8 0.47 1E-05 51.2 1.7 21 332-352 25-45 (500)
442 PRK07667 uridine kinase; Provi 84.7 0.43 9.4E-06 45.3 1.2 18 335-352 18-35 (193)
443 PRK15134 microcin C ABC transp 84.7 0.49 1.1E-05 51.5 1.7 21 332-352 310-330 (529)
444 PRK12288 GTPase RsgA; Reviewed 84.7 1.6 3.5E-05 45.9 5.5 19 334-352 205-223 (347)
445 cd01128 rho_factor Transcripti 84.7 0.46 1E-05 47.7 1.4 20 333-352 15-34 (249)
446 TIGR03878 thermo_KaiC_2 KaiC d 84.7 0.43 9.3E-06 47.7 1.2 20 333-352 35-54 (259)
447 PRK13549 xylose transporter AT 84.6 0.46 9.9E-06 51.5 1.5 21 332-352 29-49 (506)
448 PRK13946 shikimate kinase; Pro 84.6 0.46 1E-05 44.6 1.3 19 334-352 10-28 (184)
449 cd01124 KaiC KaiC is a circadi 84.6 0.39 8.5E-06 44.0 0.8 16 337-352 2-17 (187)
450 COG0444 DppD ABC-type dipeptid 84.5 0.84 1.8E-05 47.7 3.3 21 332-352 29-49 (316)
451 PRK10790 putative multidrug tr 84.5 0.51 1.1E-05 51.9 1.8 21 332-352 365-385 (592)
452 cd03273 ABC_SMC2_euk Eukaryoti 84.5 0.6 1.3E-05 45.9 2.1 20 333-352 24-43 (251)
453 PRK06995 flhF flagellar biosyn 84.5 0.44 9.6E-06 52.4 1.3 20 333-352 255-274 (484)
454 PRK14528 adenylate kinase; Pro 84.4 0.46 1E-05 44.9 1.2 17 336-352 3-19 (186)
455 PRK13549 xylose transporter AT 84.4 0.5 1.1E-05 51.2 1.7 21 332-352 286-306 (506)
456 cd04139 RalA_RalB RalA/RalB su 84.4 0.49 1.1E-05 41.5 1.3 17 336-352 2-18 (164)
457 PRK15064 ABC transporter ATP-b 84.4 0.53 1.2E-05 51.3 1.9 21 332-352 25-45 (530)
458 PRK10751 molybdopterin-guanine 84.4 0.45 9.9E-06 45.5 1.2 18 335-352 7-24 (173)
459 PF06745 KaiC: KaiC; InterPro 84.3 0.54 1.2E-05 45.1 1.7 21 332-352 17-37 (226)
460 PRK04182 cytidylate kinase; Pr 84.3 0.46 1E-05 43.1 1.2 17 336-352 2-18 (180)
461 KOG0057 Mitochondrial Fe/S clu 84.3 0.31 6.7E-06 54.3 0.0 21 332-352 376-396 (591)
462 PRK13536 nodulation factor exp 84.3 0.54 1.2E-05 49.0 1.8 21 332-352 65-85 (340)
463 PF13481 AAA_25: AAA domain; P 84.3 0.55 1.2E-05 43.4 1.7 21 332-352 30-50 (193)
464 PRK05703 flhF flagellar biosyn 84.2 0.47 1E-05 51.1 1.3 42 304-352 198-239 (424)
465 TIGR03881 KaiC_arch_4 KaiC dom 84.2 0.52 1.1E-05 45.2 1.5 21 332-352 18-38 (229)
466 cd04119 RJL RJL (RabJ-Like) su 84.1 0.52 1.1E-05 41.4 1.3 17 336-352 2-18 (168)
467 cd00154 Rab Rab family. Rab G 84.0 0.48 1E-05 40.6 1.1 17 336-352 2-18 (159)
468 PF03205 MobB: Molybdopterin g 84.0 0.53 1.1E-05 43.1 1.4 17 336-352 2-18 (140)
469 cd03243 ABC_MutS_homologs The 84.0 0.56 1.2E-05 44.5 1.6 20 333-352 28-47 (202)
470 PRK10762 D-ribose transporter 83.9 0.54 1.2E-05 50.9 1.7 21 332-352 276-296 (501)
471 PRK15064 ABC transporter ATP-b 83.9 0.56 1.2E-05 51.1 1.8 21 332-352 343-363 (530)
472 COG1122 CbiO ABC-type cobalt t 83.9 0.59 1.3E-05 46.6 1.8 21 332-352 28-48 (235)
473 PRK15439 autoinducer 2 ABC tra 83.9 0.56 1.2E-05 51.0 1.7 21 332-352 35-55 (510)
474 PRK00080 ruvB Holliday junctio 83.9 0.44 9.6E-06 48.8 0.9 18 335-352 52-69 (328)
475 PRK11160 cysteine/glutathione 83.8 0.57 1.2E-05 51.7 1.8 21 332-352 364-384 (574)
476 PRK10416 signal recognition pa 83.8 0.5 1.1E-05 49.1 1.2 20 333-352 113-132 (318)
477 TIGR02173 cyt_kin_arch cytidyl 83.8 0.51 1.1E-05 42.6 1.2 17 336-352 2-18 (171)
478 PRK14257 phosphate ABC transpo 83.7 0.6 1.3E-05 48.4 1.8 21 332-352 106-126 (329)
479 COG3265 GntK Gluconate kinase 83.6 0.36 7.8E-06 45.9 0.1 26 340-365 1-31 (161)
480 cd04137 RheB Rheb (Ras Homolog 83.6 0.56 1.2E-05 42.5 1.4 18 335-352 2-19 (180)
481 COG2884 FtsE Predicted ATPase 83.6 0.59 1.3E-05 46.3 1.6 21 332-352 26-46 (223)
482 TIGR01842 type_I_sec_PrtD type 83.6 0.59 1.3E-05 51.0 1.8 21 332-352 342-362 (544)
483 PRK15453 phosphoribulokinase; 83.5 0.6 1.3E-05 48.3 1.7 19 334-352 5-23 (290)
484 smart00173 RAS Ras subfamily o 83.5 0.52 1.1E-05 41.8 1.1 17 336-352 2-18 (164)
485 PLN02772 guanylate kinase 83.5 1.5 3.2E-05 47.3 4.6 46 297-352 108-153 (398)
486 TIGR01193 bacteriocin_ABC ABC- 83.5 0.6 1.3E-05 52.7 1.8 21 332-352 498-518 (708)
487 TIGR02633 xylG D-xylose ABC tr 83.4 0.57 1.2E-05 50.6 1.6 21 332-352 284-304 (500)
488 PRK08181 transposase; Validate 83.4 0.56 1.2E-05 47.7 1.4 20 333-352 105-124 (269)
489 cd04114 Rab30 Rab30 subfamily. 83.4 0.57 1.2E-05 41.7 1.4 18 335-352 8-25 (169)
490 TIGR01194 cyc_pep_trnsptr cycl 83.4 0.59 1.3E-05 51.3 1.7 21 332-352 366-386 (555)
491 PRK05537 bifunctional sulfate 83.3 0.56 1.2E-05 52.4 1.5 22 331-352 389-410 (568)
492 PF13521 AAA_28: AAA domain; P 83.3 0.41 9E-06 43.6 0.4 16 337-352 2-17 (163)
493 cd00879 Sar1 Sar1 subfamily. 83.2 0.58 1.3E-05 42.9 1.4 19 334-352 19-37 (190)
494 PRK10982 galactose/methyl gala 83.2 0.6 1.3E-05 50.3 1.6 21 332-352 272-292 (491)
495 PRK10789 putative multidrug tr 83.2 0.62 1.4E-05 51.3 1.8 21 332-352 339-359 (569)
496 PRK11288 araG L-arabinose tran 83.1 0.6 1.3E-05 50.5 1.6 21 332-352 277-297 (501)
497 cd04124 RabL2 RabL2 subfamily. 83.1 0.55 1.2E-05 42.2 1.1 17 336-352 2-18 (161)
498 PRK11147 ABC transporter ATPas 83.1 0.63 1.4E-05 52.1 1.8 21 332-352 27-47 (635)
499 PRK11819 putative ABC transpor 83.1 0.65 1.4E-05 51.1 1.9 21 332-352 31-51 (556)
500 cd01898 Obg Obg subfamily. Th 83.1 0.54 1.2E-05 41.8 1.0 17 336-352 2-18 (170)
No 1
>PLN02597 phosphoenolpyruvate carboxykinase [ATP]
Probab=100.00 E-value=2.3e-130 Score=1035.10 Aligned_cols=380 Identities=90% Similarity=1.424 Sum_probs=365.5
Q ss_pred CccccCCCCCcCCCCCCCCCCCCCCCCCcccchhccCcccceeEEcCCHHHHHHHHHhhcCCeEEecCCceEEecCCeec
Q 011235 102 PKVVRGDPARKAETPKFAADPGDHFSFTPTISVSDSSLKFTHVLYNLSPAELYEQAIKYEQGSFIASSGALATLSGAKTG 181 (490)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~gl~~~~v~~Nls~~eL~e~A~~~~~g~~~t~~GaL~~~tG~~TG 181 (490)
|+|++|||..+..+++. ..++...|..+|++..+|+|||++++|||+|+++++|++++++|+|+++||++||
T Consensus 1 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~nl~~~~Lye~Al~~~eG~l~~~~GaL~v~TGk~TG 72 (555)
T PLN02597 1 PKVVRGDPARKKEPPKS--------VVAPTIDVSDSGLKFTHVLYNLSPAELYEQAIKYEKGSFITSTGALATLSGAKTG 72 (555)
T ss_pred CccccCCccccCcCccc--------ccccccccccccCCcceEEeCCCHHHHHHHHHHhCCCeEEecCCCEEecCCCcCC
Confidence 78999999887765543 4777889999999999999999999999999999999877779999999999999
Q ss_pred CCCCCeeeecCCCccccccccC------cCccc---------------ccEEEEEeeecCCCCCeEEEEEEecccchHHH
Q 011235 182 RSPRDKRVVKDETTEHELWWGK------MKNHD---------------VQVFVNDQFLNWDPQNRVKVRIVSARAYHSLF 240 (490)
Q Consensus 182 RSpkdk~iV~~~~t~~~i~wg~------~~e~~---------------~~lyv~D~~vG~d~~~~i~vRvit~~a~~alf 240 (490)
|||+|||||+++.++++||||+ |++++ ++|||+|+|+|+||++|++||+|+++|||+||
T Consensus 73 RSP~DKfIV~d~~t~~~iwWg~g~vN~p~~~~~f~~l~~~~~~~l~~~~~lfv~D~~~Gad~~~r~~vRvite~aw~alF 152 (555)
T PLN02597 73 RSPKDKRVVRDETTEDELWWGKGSPNIEMDEETFLVNRERAVDYLNSLDKVFVNDQFLNWDPENRIKVRIVSARAYHSLF 152 (555)
T ss_pred CCcccceecCCCCcccceeccCCccCccCCHHHHHHHHHHHHHHHccCCCEEEEeeeeccCccceeeEEEEeCHHHHHHH
Confidence 9999999999999999999964 44432 46999999999999999999999999999999
Q ss_pred HhhcccCCChHhhccCCCCCEEEEEcCCCCCCccCCCCCcccEEEEecCCCeEEEEcccchhhhHHHHHHHHHHhcccCC
Q 011235 241 MHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQ 320 (490)
Q Consensus 241 ~~NLf~rp~~~e~~~~~~pD~tI~~ap~f~~~~~~~g~~s~~~i~id~~~~~~~I~Gt~Y~GEmKK~iltl~~~~l~~~G 320 (490)
++|||+||+.+|++.|++||||||++|+|+++|+.+|++|+++|++|+++++++|+||+|+|||||++||+|||+|++||
T Consensus 153 ~~nmfirP~~~el~~f~~PdftIi~ap~f~a~~~~~g~~Se~~i~in~~~~~~lI~GT~YaGE~KK~iFs~~~~ll~~rg 232 (555)
T PLN02597 153 MHNMCIRPTPEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLKRKEMVILGTQYAGEMKKGLFSLMHYLMPMRG 232 (555)
T ss_pred HHhcCCCCChHHhccCCCCCEEEEeCCCCCCCccccCCCCCcEEEEEccCCeEEEEccchhhhhHHHHHHHHHHHHHHCC
Confidence 99999999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccCCCCCEEEEEeCCCCCcccccccCCCceeecCceeecCCCccccCcceEEeecCCCCCCCcchhhccccc
Q 011235 321 ILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFG 400 (490)
Q Consensus 321 ~L~~H~sani~~~g~~~lffGlSGtGKTTLs~~~~~~lI~DD~~~wsd~Gvfn~EgGcYaK~~dLs~e~eP~I~~Ai~f~ 400 (490)
+|+||||||++.+|++++||||||||||||++++++.||+||+|+|+++||||||||||||||+|++|+||+||+|++|+
T Consensus 233 ~l~mHasaNv~~~g~~~lffGlSGtGKTTLsad~~~~li~DDEHgW~~~GVfNfEGGCYAK~i~Ls~e~EPeI~~Ai~fg 312 (555)
T PLN02597 233 ILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTDPNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSEEKEPDIWNAIKFG 312 (555)
T ss_pred cEeecCeeccCCCCcEEEEEecCCCCccceecCCCCceeecccccccCCceEeecCceEEEecCCCcccchHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeEEcCCCCeeecCCCCccccceEEEecccccCCCCCCCCCCccEEEEEEeecCCCCCCccccCHHHHHHHHHhcc
Q 011235 401 AVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGY 480 (490)
Q Consensus 401 ailENV~lD~~~~~vdf~d~s~T~NtRa~yPi~~i~N~~~~~~~g~P~~IIfLt~DafgvLPPVskLt~eQA~y~FlsGy 480 (490)
+|||||++|++++.|||+|.|+|+|||++|||++|+|+..|++++||++||||+||||||||||||||+|||||||||||
T Consensus 313 avLENVv~d~~~~~~df~D~s~TeNtR~aYPi~~I~na~~p~~~~hP~~IifLT~DAfGVlPPvskLt~eQA~yhFlsGy 392 (555)
T PLN02597 313 TVLENVVFDEHTREVDYSDKSVTENTRASYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLTLAQTMYHFISGY 392 (555)
T ss_pred ceEEeeEECCCCCccCCcCCcccccceEEeEHHhccccCCCccCCCCCEEEEEeccccCCCCccccCCHHHHHHHHHhcc
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc
Q 011235 481 TALVCAMSL 489 (490)
Q Consensus 481 takvagte~ 489 (490)
||||||||.
T Consensus 393 TakvAGTE~ 401 (555)
T PLN02597 393 TALVAGTED 401 (555)
T ss_pred eeccccccC
Confidence 999999995
No 2
>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional
Probab=100.00 E-value=1.3e-125 Score=1003.98 Aligned_cols=357 Identities=64% Similarity=1.069 Sum_probs=344.1
Q ss_pred ccchhccCcccceeEEcCCHHHHHHHHH-hhcCCeEEecCCceEEecCCeecCCCCCeeeecCCCccccccccC----cC
Q 011235 131 TISVSDSSLKFTHVLYNLSPAELYEQAI-KYEQGSFIASSGALATLSGAKTGRSPRDKRVVKDETTEHELWWGK----MK 205 (490)
Q Consensus 131 ~~~l~~~gl~~~~v~~Nls~~eL~e~A~-~~~~g~~~t~~GaL~~~tG~~TGRSpkdk~iV~~~~t~~~i~wg~----~~ 205 (490)
...|...||.+.+++|||++++|||+|+ ++++| .+|++|+|+++||++|||||+|||||+++.++++||||+ |+
T Consensus 31 ~~~l~~~g~~~~~i~~Nl~~~~L~E~al~~~~~g-~~t~~GaL~v~TG~~TGRSpkDKfIV~~~~~~d~i~Wg~vN~p~~ 109 (561)
T PTZ00311 31 EEELHKLGLHNTTIHRNLTVPELYEHALKYEKNT-SITSTGALCVYSGAKTGRSPKDKRIVKEDSSEDDIWWGKVNIPLS 109 (561)
T ss_pred hccHhhcCCCCCeEEeCCCHHHHHHHHHhhcCCc-EEecCCceEEecCCccCCCCCceEEeCCCCcccccccCccCccCC
Confidence 3446678898889999999999999999 56677 599999999999999999999999999999999999998 44
Q ss_pred cc---------------cccEEEEEeeecCCCCCeEEEEEEecccchHHHHhhcccCCChHhh----ccCCCCCEEEEEc
Q 011235 206 NH---------------DVQVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEEL----ENFGTPDFTIYNA 266 (490)
Q Consensus 206 e~---------------~~~lyv~D~~vG~d~~~~i~vRvit~~a~~alf~~NLf~rp~~~e~----~~~~~pD~tI~~a 266 (490)
++ .++|||+|+|+|+||+|+++||+|+++|||+|||+|||++|+.+|+ +.| +||||||++
T Consensus 110 ~~~f~~L~~~~~~yl~~~~~lyv~D~~vGaDp~~~l~vRvit~~a~~alF~~nmfirP~~~el~~~~~~f-~PdftIi~~ 188 (561)
T PTZ00311 110 EESFEINKKRAIDYLNTRERLFVVDGYAGWDPKYRLKVRVITTRAYHALFMRNMLIRPTNEELKKFGEDF-VPDFTIYNA 188 (561)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeeeeecCcccceeEEEEecHHHHHHHHHHCCCCCChHHhhccccCC-CCCEEEEEC
Confidence 43 2689999999999999999999999999999999999999999999 777 899999999
Q ss_pred CCCCCCccCCCCCcccEEEEecCCCeEEEEcccchhhhHHHHHHHHHHhcccCCeeeeccccccCCCCCEEEEEeCCCCC
Q 011235 267 GQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTG 346 (490)
Q Consensus 267 p~f~~~~~~~g~~s~~~i~id~~~~~~~I~Gt~Y~GEmKK~iltl~~~~l~~~G~L~~H~sani~~~g~~~lffGlSGtG 346 (490)
|+|+++++.+|++|+++|++|+++++++|+||+|+|||||++||+||++|++||+||||||||++++|++++||||||||
T Consensus 189 P~f~a~~~~~G~~se~~i~in~~~~~~lI~GT~YaGEiKKgiFt~~~~ll~~rg~l~lHasa~v~~~g~~~~ffGlSGtG 268 (561)
T PTZ00311 189 GEFKANRLIEGVTSETSVALNFKRREMVILGTQYAGEMKKGILTVMMYLMPKQGVLPLHSSANVGKKGDVTLFFGLSGTG 268 (561)
T ss_pred CCCCCCcccCCCCcccEEEEEccCCeEEEEcccchhhhHHHHHHHHHHHHHHCCceeeeeeEeeCCCCCEEEEEccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceeecCceeecCCCccccCcceEEeecCCCCCCCcchhhcccccceeeeeEEcCCCCeeecCCCCccccc
Q 011235 347 KTTLSTDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENT 426 (490)
Q Consensus 347 KTTLs~~~~~~lI~DD~~~wsd~Gvfn~EgGcYaK~~dLs~e~eP~I~~Ai~f~ailENV~lD~~~~~vdf~d~s~T~Nt 426 (490)
||||+++++|.||+||+|+|+++||||+|||||||||+|++|.||+||+|++|++|||||++|++++.|||+|.|+|+||
T Consensus 269 KtTLsa~~~~~li~DD~~gW~~~Gvfn~EGGCYAK~i~Ls~e~EPeI~~Ai~fgavLENVv~d~~~~~~df~d~s~TeNt 348 (561)
T PTZ00311 269 KTTLSADPNRKLIGDDEHVWTDDGVFNIEGGCYAKCIDLSKETEPEIYNAIRFGAVLENVVLDKVTREVDFNDISITENT 348 (561)
T ss_pred HHHhccCCCCceeecccccccCCceEeecCceEEEecCCCcccChHHHHhhccCceEEeeEEcCCCCcccCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred eEEEecccccCCCCCCCCCCccEEEEEEeecCCCCCCccccCHHHHHHHHHhccccccccccc
Q 011235 427 RAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVCAMSL 489 (490)
Q Consensus 427 Ra~yPi~~i~N~~~~~~~g~P~~IIfLt~DafgvLPPVskLt~eQA~y~FlsGytakvagte~ 489 (490)
|++|||++|+|+.+|++++||++|||||||||||||||||||+|||||||||||||||||||.
T Consensus 349 R~ayP~~~I~na~~~~~~~~P~~IifLT~DafGVlPPvskLt~eQA~yhFlsGyTakvaGTE~ 411 (561)
T PTZ00311 349 RCAYPLEHIPNAKIPAVGGHPKNIIFLTCDAFGVLPPVSKLTPEQAMYHFISGYTAKVAGTEV 411 (561)
T ss_pred eEEeEHHhccccCCCCcCCCCCEEEEEeccccCCCCccccCCHHHHHHHHHcccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999995
No 3
>cd00484 PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the ATP-dependent groups.
Probab=100.00 E-value=1.2e-125 Score=998.59 Aligned_cols=345 Identities=66% Similarity=1.059 Sum_probs=336.5
Q ss_pred eeEEcCCHHHHHHHHHhhcCCeEEecCCceEEecCCeecCCCCCeeeecCCCccccccccC----cCccc----------
Q 011235 143 HVLYNLSPAELYEQAIKYEQGSFIASSGALATLSGAKTGRSPRDKRVVKDETTEHELWWGK----MKNHD---------- 208 (490)
Q Consensus 143 ~v~~Nls~~eL~e~A~~~~~g~~~t~~GaL~~~tG~~TGRSpkdk~iV~~~~t~~~i~wg~----~~e~~---------- 208 (490)
+|+||++++||||+|+++.+| ++|++|+|+++||++|||||+|||||+++.++++||||+ |++++
T Consensus 2 ~v~~Nls~~eL~E~A~~~~eg-~~t~~GaL~v~TG~~TGRSPkDkfIV~~~~t~~~i~wg~vn~~~~~~~f~~L~~~~~~ 80 (508)
T cd00484 2 HIHHNLSPAELYEEALKRGEG-VLTSTGALAVDTGKKTGRSPKDKFIVDEPSSEDDIWWGKVNQPISEETFEILRERAVD 80 (508)
T ss_pred ccccCCCHHHHHHHHHhCCCC-EEecCCCeEeccCCccCCCCCceeEeCCCCccccccccccCcCCCHHHHHHHHHHHHH
Confidence 589999999999999999777 599999999999999999999999999999999999998 44432
Q ss_pred ----ccEEEEEeeecCCCCCeEEEEEEecccchHHHHhhcccCCChHhhccCCCCCEEEEEcCCCCCCccCCCCCcccEE
Q 011235 209 ----VQVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSI 284 (490)
Q Consensus 209 ----~~lyv~D~~vG~d~~~~i~vRvit~~a~~alf~~NLf~rp~~~e~~~~~~pD~tI~~ap~f~~~~~~~g~~s~~~i 284 (490)
++|||+|+|+|+||+||++||+|+++|||+|||+|||++|+.+|++.| +||||||++|+|+++++.+|++|+++|
T Consensus 81 yl~~~~lyv~D~~vGadp~~r~~vRvi~~~a~~alF~~nmfi~P~~eel~~f-~pdftI~~~P~f~~~~~~~G~~s~~~i 159 (508)
T cd00484 81 YLNTKKLFVFDGFAGADPEYRLKVRVITERAWHALFMRNMFIRPTEEELENF-GPDFTIYNAPKFKANPETDGMNSETFV 159 (508)
T ss_pred HhcCCCEEEEeeeeecCcccceeeEEEECHHHHHHHHHhCCCCCChHHhccC-CcCEEEEECCCCcCCccccCCCcccEE
Confidence 789999999999999999999999999999999999999999999999 799999999999999999999999999
Q ss_pred EEecCCCeEEEEcccchhhhHHHHHHHHHHhcccCCeeeeccccccCCCCCEEEEEeCCCCCcccccccCCCceeecCce
Q 011235 285 DLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTDHNRYLIGDDEH 364 (490)
Q Consensus 285 ~id~~~~~~~I~Gt~Y~GEmKK~iltl~~~~l~~~G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~~~~~~lI~DD~~ 364 (490)
++|+++++++|+||+|+|||||++|++||++|++||+|+||||||++.+|++++||||||||||||++++.|.||+||||
T Consensus 160 iin~~~~~~lI~GT~YaGEiKKgif~~~~~ll~~~g~l~lH~sanv~~~~~~~~ffGlSGtGKtTLsa~~~r~li~DDeh 239 (508)
T cd00484 160 IINFAEREMVIGGTEYAGEMKKGIFSVMNYLLPKKGVLSMHCSANVGKKGDVALFFGLSGTGKTTLSADPNRKLIGDDEH 239 (508)
T ss_pred EEEccCCeEEEECccchhhhHHHHHHHHHHHHHhCCcEeeccccccCCCCCEEEEEecCCCCHHHhccCccCCeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCccccCcceEEeecCCCCCCCcchhhcccccceeeeeEEcCCCCeeecCCCCccccceEEEecccccCCCCCCCC
Q 011235 365 CWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVG 444 (490)
Q Consensus 365 ~wsd~Gvfn~EgGcYaK~~dLs~e~eP~I~~Ai~f~ailENV~lD~~~~~vdf~d~s~T~NtRa~yPi~~i~N~~~~~~~ 444 (490)
+|+++||||||||||||||+|++|.||+||+|++|++|||||++|+++++|||+|.|+|+|||++|||++|+|+..++++
T Consensus 240 gW~~~Gvfn~EGGcYaK~i~Ls~e~EP~I~~Ai~fgavlENVv~d~~~~~~df~d~s~TeNtR~~yP~~~I~na~~~~~~ 319 (508)
T cd00484 240 GWSDRGVFNIEGGCYAKCINLSEEKEPEIYNAIKFGAVLENVVVDEETREVDYDDDSITENTRAAYPIEHIPNAVIPGVG 319 (508)
T ss_pred ccCCCceEeecCceEEEecCCCcccChHHHHhhccCceEeeeEEcCCCCccCCCCCcccccceEEeEHHHccccCCCCcC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CCccEEEEEEeecCCCCCCccccCHHHHHHHHHhccccccccccc
Q 011235 445 PHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVCAMSL 489 (490)
Q Consensus 445 g~P~~IIfLt~DafgvLPPVskLt~eQA~y~FlsGytakvagte~ 489 (490)
+||++||||+||||||||||||||+|||||||||||||||||||.
T Consensus 320 ~~p~~iifLT~DafgVlPPvskLt~eQA~y~FlsGyTak~agTE~ 364 (508)
T cd00484 320 GHPKNIIFLTADAFGVLPPVSKLTPEQAMYHFLSGYTAKVAGTER 364 (508)
T ss_pred CCCCEEEEEeccccCCCCccccCCHHHHHHHHHcccccccccccc
Confidence 999999999999999999999999999999999999999999995
No 4
>TIGR00224 pckA phosphoenolpyruvate carboxykinase (ATP). Involved in the gluconeogenesis pathway. It converts oxaloacetic acid to phosphoenolpyruvate using ATP. Enzyme is a monomer. The reaction is also catalysed by phosphoenolpyruvate carboxykinase (GTP) (EC 4.1.1.32) using GTP instead of ATP, described in PROSITE:PDOC00421
Probab=100.00 E-value=3.4e-125 Score=994.82 Aligned_cols=355 Identities=52% Similarity=0.841 Sum_probs=341.4
Q ss_pred cchhccCccc-ceeEEcCCHHHHHHHHHhh-----cCCeEEecCCceEEecCCeecCCCCCeeeecCCCccccccccC--
Q 011235 132 ISVSDSSLKF-THVLYNLSPAELYEQAIKY-----EQGSFIASSGALATLSGAKTGRSPRDKRVVKDETTEHELWWGK-- 203 (490)
Q Consensus 132 ~~l~~~gl~~-~~v~~Nls~~eL~e~A~~~-----~~g~~~t~~GaL~~~tG~~TGRSpkdk~iV~~~~t~~~i~wg~-- 203 (490)
..|...|+.+ .+|+|||++++|||+|+++ ++| +++++|+|+++||++|||||||||||+++.++++||||+
T Consensus 8 ~~l~~~g~~~~~~v~~Nl~~~~L~e~a~~~~~~~~~eg-~~t~~Gal~v~TG~~TGRSpkDK~IV~~~~t~~~i~Wg~vN 86 (532)
T TIGR00224 8 QELEALGISDVHDIVYNPSYAQLYEEELKPSLTGYEKG-VLTSTGAVAVDTGIFTGRSPKDKYIVEDETTKDTIWWGPVN 86 (532)
T ss_pred hhHHhcCCCCCceEEeCCCHHHHHHHHHhhccccCCCc-eeccCCceEEecCCeeCCCcCceEEeCCCCcccccccCcCC
Confidence 4466777876 6899999999999999999 678 599999999999999999999999999999999999998
Q ss_pred --cCcc--------------cccEEEEEeeecCCCCCeEEEEEEecccchHHHHhhcccCCChHhhccCCCCCEEEEEcC
Q 011235 204 --MKNH--------------DVQVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAG 267 (490)
Q Consensus 204 --~~e~--------------~~~lyv~D~~vG~d~~~~i~vRvit~~a~~alf~~NLf~rp~~~e~~~~~~pD~tI~~ap 267 (490)
|+++ .++|||+|+|+|+||+||++||+|+++|||+||++|||++|+++|++.| +||||||++|
T Consensus 87 ~p~~~~~f~~L~~~v~~~l~~~~lyv~D~~~GaDp~~rl~vRvite~AwhalF~~nmfirP~~eel~~f-ePdftI~~~p 165 (532)
T TIGR00224 87 KPLSEETWQHLKGLVTRQLSRKRLFVVDAFCGADPKYRLSVRVVTEVAWQAHFVKNMFIRPTEEELAGF-EPDFTVMNGA 165 (532)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCEEEEeeeeccCcccceeEEEEEcHHHHHHHHHhhCCCCChHHhccC-CCCEEEEeCC
Confidence 4443 2679999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCC-CCccCCCCCcccEEEEecCCCeEEEEcccchhhhHHHHHHHHHHhcccCCeeeeccccccCCCCCEEEEEeCCCCC
Q 011235 268 QFP-CNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTG 346 (490)
Q Consensus 268 ~f~-~~~~~~g~~s~~~i~id~~~~~~~I~Gt~Y~GEmKK~iltl~~~~l~~~G~L~~H~sani~~~g~~~lffGlSGtG 346 (490)
+|+ +++..+|++|+++|++|+++++++|+||+|+|||||++|++||++|++||+|+||||||++++|++++||||||||
T Consensus 166 ~f~~ad~~~~g~~S~~~i~in~~~~~~lI~GT~YaGEiKKgiFs~~~~ll~~rg~l~lH~sanv~~~g~~~~ffGlSGtG 245 (532)
T TIGR00224 166 KFTNPNWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGILSMHCSANVGEKGDVALFFGLSGTG 245 (532)
T ss_pred CCCCCCcccCCCCcCcEEEEecccCeEEEECcchhhhhHHHHHHHHHHHHHhCCeEeecCeeeeCCCCCEEEEEecCCCC
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceeecCceeecCCCccccCcceEEeecCCCCCCCcchhhcccccceeeeeEEcCCCCeeecCCCCccccc
Q 011235 347 KTTLSTDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENT 426 (490)
Q Consensus 347 KTTLs~~~~~~lI~DD~~~wsd~Gvfn~EgGcYaK~~dLs~e~eP~I~~Ai~f~ailENV~lD~~~~~vdf~d~s~T~Nt 426 (490)
||||++++.|.||+||+|+|+++||||||||||||||+|++|+||+||+|++|++|||||++|++ +.|||+|.|+|+||
T Consensus 246 KTTLsad~~r~li~DDEhgW~~~Gvfn~EGGCYaK~i~Ls~e~EPeI~~Ai~fgavLENVv~d~~-~~vdf~d~s~TeNt 324 (532)
T TIGR00224 246 KTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIHLSEEKEPEIYNAIRRDALLENVVVRED-GTVDFDDGSKTENT 324 (532)
T ss_pred hhhhhccccccccccccccccCCceEeecCceEEEecCCCcccchHHHHhcCCCceEEeeeECCC-CCccCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999997 89999999999999
Q ss_pred eEEEecccccCCCCCC-CCCCccEEEEEEeecCCCCCCccccCHHHHHHHHHhccccccccccc
Q 011235 427 RAAYPIEYIPNAKIPC-VGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVCAMSL 489 (490)
Q Consensus 427 Ra~yPi~~i~N~~~~~-~~g~P~~IIfLt~DafgvLPPVskLt~eQA~y~FlsGytakvagte~ 489 (490)
|++|||++|+|+..++ +++||++|||||||||||||||||||||||||||||||||||||||.
T Consensus 325 R~ayPi~~I~n~~~~~~~~~~p~~iifLT~DAfGVlPPvskLt~eQA~yhFlsGyTakvAGTE~ 388 (532)
T TIGR00224 325 RVSYPIYHIDNIVKPVSAAGHATKVIFLTADAFGVLPPVSKLTPEQTMYHFLSGFTAKLAGTER 388 (532)
T ss_pred eEEeEHHhccccCCCCccCCCCCEEEEEeccccCCCCccccCCHHHHHHHHHhcceeccccccC
Confidence 9999999999998787 77899999999999999999999999999999999999999999994
No 5
>COG1866 PckA Phosphoenolpyruvate carboxykinase (ATP) [Energy production and conversion]
Probab=100.00 E-value=8.4e-122 Score=948.83 Aligned_cols=354 Identities=54% Similarity=0.891 Sum_probs=341.7
Q ss_pred chhccCccc-ceeEEcCCHHHHHHHHHhhcCCeEEecCCceEEecCCeecCCCCCeeeecCCCccccccccC----cCcc
Q 011235 133 SVSDSSLKF-THVLYNLSPAELYEQAIKYEQGSFIASSGALATLSGAKTGRSPRDKRVVKDETTEHELWWGK----MKNH 207 (490)
Q Consensus 133 ~l~~~gl~~-~~v~~Nls~~eL~e~A~~~~~g~~~t~~GaL~~~tG~~TGRSpkdk~iV~~~~t~~~i~wg~----~~e~ 207 (490)
.+..+++.. ..|+||++.++|||+++++++|. +|++|+|++.||.+|||||||||||+++.+++.|||+. |+++
T Consensus 9 ~~~~~~~~~~~~v~~n~s~~~L~e~~i~~~eg~-lt~~Gal~~~TG~~TGRSPkDkfiV~~~~t~~~i~W~~~Nkpi~~e 87 (529)
T COG1866 9 ELEALGIRDVEDVVYNLSAAQLYEEAIRRGEGV-LTATGALRVDTGIYTGRSPKDKFIVRDDSTRDTIWWGTRNKPISPE 87 (529)
T ss_pred hHHHhcccchHHHHhcCCHHHHHHHHhhcCCCc-cCCCCceEEecccccCCCCCCceEEecCcccccccccccCccCCHH
Confidence 477888875 79999999999999999999995 99999999999999999999999999999999999994 5554
Q ss_pred c--------------ccEEEEEeeecCCCCCeEEEEEEecccchHHHHhhcccCCChHhhccCCCCCEEEEEcCCCCCCc
Q 011235 208 D--------------VQVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNR 273 (490)
Q Consensus 208 ~--------------~~lyv~D~~vG~d~~~~i~vRvit~~a~~alf~~NLf~rp~~~e~~~~~~pD~tI~~ap~f~~~~ 273 (490)
. +++||+|+++|+|+++++++|+|++.|||+||++||||||+.+++..| +|||+|+++|.|++++
T Consensus 88 ~f~~L~~~~~~yl~~k~lfv~d~~~Ga~~~~~l~vrvvte~Awh~lF~~nlfIrP~~e~l~~~-~~dftvin~p~f~~~~ 166 (529)
T COG1866 88 TFDRLKGDVTDYLSGKDLFVVDGFAGADPDYRLPVRVVTEVAWHALFIRNLFIRPTGEELSTF-KPDFTVINAPSFKADP 166 (529)
T ss_pred HHHHHHHHHHHHhccCcEEEEEeeecCCccceeeeEeehhhHHHHHHHHhcccccchhhhccC-CCCeEEEeCCcCCCCh
Confidence 2 789999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred cCCCCCcccEEEEecCCCeEEEEcccchhhhHHHHHHHHHHhcccCCeeeeccccccCCCCCEEEEEeCCCCCccccccc
Q 011235 274 YTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTD 353 (490)
Q Consensus 274 ~~~g~~s~~~i~id~~~~~~~I~Gt~Y~GEmKK~iltl~~~~l~~~G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~~ 353 (490)
..+|++|+++|++|++++.++|+||.|+|||||++|++|||+||.+|+++||||||++..|++++|||||||||||||+|
T Consensus 167 ~~~g~~Se~~i~~n~~~~~~lIggT~YaGEMKK~~fs~mnylLP~~~i~~MHcsANvG~~gdvalFFGLSGTGKTTLSaD 246 (529)
T COG1866 167 KRDGLRSETFVAFNFTERIVLIGGTWYAGEMKKGIFSVMNYLLPLKGILSMHCSANVGEKGDVALFFGLSGTGKTTLSAD 246 (529)
T ss_pred hhcccccccEEEEecccceeeeeccchhhhhhhhHHHHhhccccccccccceeccccCcCCCeEEEEeccCCCcceeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeecCceeecCCCccccCcceEEeecCCCCCCCcchhhcccccceeeeeEEcCCCCeeecCCCCccccceEEEecc
Q 011235 354 HNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIE 433 (490)
Q Consensus 354 ~~~~lI~DD~~~wsd~Gvfn~EgGcYaK~~dLs~e~eP~I~~Ai~f~ailENV~lD~~~~~vdf~d~s~T~NtRa~yPi~ 433 (490)
|.|+||+||||+|+++||||||||||+|||+|++|+||+||+||++++|||||++|++ +.|||+|.|+|||||++|||+
T Consensus 247 p~R~LIGDDEHgW~d~GVFN~EGGCYAK~I~Ls~e~EP~I~~Ai~~~avLENVVvded-g~~Df~D~SlTeNTR~aYpi~ 325 (529)
T COG1866 247 PHRRLIGDDEHGWDDRGVFNFEGGCYAKTINLSEEKEPEIYAAIKRGAVLENVVVDED-GTPDFDDGSLTENTRAAYPIE 325 (529)
T ss_pred CccccccCcccccCCCceEeecCccccccccCchhhchhHHHHhhccceeeeEEEcCC-CCcCCccccccccccccchHh
Confidence 9999999999999999999999999999999999999999999999999999999997 899999999999999999999
Q ss_pred cccCCCCCCCCCCccEEEEEEeecCCCCCCccccCHHHHHHHHHhccccccccccc
Q 011235 434 YIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVCAMSL 489 (490)
Q Consensus 434 ~i~N~~~~~~~g~P~~IIfLt~DafgvLPPVskLt~eQA~y~FlsGytakvagte~ 489 (490)
+|||+.....++||++||||+|||||||||||||||||||||||||||||+||||.
T Consensus 326 ~Ipn~~~~~~~ghp~~iIfLTaDafGVlPPvsrLTpeQamYhFlsG~TaK~agTE~ 381 (529)
T COG1866 326 HIPNVSPSVKAGHPKNVIFLTADAFGVLPPVSRLTPEQAMYHFLSGYTAKLAGTER 381 (529)
T ss_pred hccccCcccccCCCceEEEEeccccCCCCcchhcCHHHHHHHHHcchhhhcccccc
Confidence 99997655667799999999999999999999999999999999999999999994
No 6
>PF01293 PEPCK_ATP: Phosphoenolpyruvate carboxykinase The Prosite pattern is specific to the ATP binding region; InterPro: IPR001272 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate. The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria []. Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding []. With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels []. PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another [, ]. Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site []. PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents ATP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004612 phosphoenolpyruvate carboxykinase (ATP) activity, 0005524 ATP binding, 0006094 gluconeogenesis; PDB: 2PY7_X 2OLR_A 1AYL_A 1K3D_A 1OEN_A 1AQ2_A 1OS1_A 2OLQ_A 1K3C_A 2PXZ_X ....
Probab=100.00 E-value=2.3e-116 Score=927.22 Aligned_cols=346 Identities=58% Similarity=0.977 Sum_probs=297.0
Q ss_pred ceeEEcCCHHHHHHHHHhhcCCeEEecCCceEEecCCeecCCCCCeeeecCCCccccccccC----cCccc---------
Q 011235 142 THVLYNLSPAELYEQAIKYEQGSFIASSGALATLSGAKTGRSPRDKRVVKDETTEHELWWGK----MKNHD--------- 208 (490)
Q Consensus 142 ~~v~~Nls~~eL~e~A~~~~~g~~~t~~GaL~~~tG~~TGRSpkdk~iV~~~~t~~~i~wg~----~~e~~--------- 208 (490)
.+||||||++||||+|+++++|. ++++|+|+++||++|||||+|||||+++.++++|||++ |++++
T Consensus 2 ~~v~~Nls~~~L~e~a~~~~eg~-lt~~Gal~v~tG~~TGRSp~dkfIV~~~~~~~~v~Wg~~n~~i~~e~f~~L~~~v~ 80 (466)
T PF01293_consen 2 ANVYRNLSPPELYEEAIKRGEGV-LTKTGALVVNTGKFTGRSPKDKFIVDEPGTEDKVWWGSVNQPISEEQFEKLLERVV 80 (466)
T ss_dssp SEEEES--HHHHHHHHCHTTTEE-E-TTSSEEE--TT-SSB-GGGEEEE-STTTTTTS-BTTSBEEE-HHHHHHHHHHHH
T ss_pred CeeEeCCCHHHHHHHHHhcCCCE-EccCCCEEEeCCCccCCCCCceEEecCCccccccccccCCcccCHHHHHHHHHHHH
Confidence 47999999999999999999995 99999999999999999999999999999999999988 45432
Q ss_pred -----ccEEEEEeeecCCCCCeEEEEEEecccchHHHHhhcccCCChHhhccCCCCCEEEEEcCCCCCCccCCCCCcccE
Q 011235 209 -----VQVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTS 283 (490)
Q Consensus 209 -----~~lyv~D~~vG~d~~~~i~vRvit~~a~~alf~~NLf~rp~~~e~~~~~~pD~tI~~ap~f~~~~~~~g~~s~~~ 283 (490)
++|||+|++||+||++|++||+|++++||+||++|||++|..+|+.+| +||||||++|+|+++++.+|+.|+++
T Consensus 81 ~yL~~k~lyv~D~~vG~d~~~~~~vRvit~~a~~aLF~~nL~~~p~~~e~~~f-~pd~tI~~~p~f~~~p~~~g~~s~~~ 159 (466)
T PF01293_consen 81 DYLSTKELYVQDGYVGADPDYRIKVRVITERAWHALFARNLFIRPPPEELQNF-EPDFTIINAPDFKADPEIDGTNSDTF 159 (466)
T ss_dssp HHHTTSEEEEEEEEESSSTTT-EEEEEEESSHHHHHHHHHHSB-GSHHHHHT--S-SEEEEEETTS--TTCHCT-SSS-E
T ss_pred HHhcccceEEEEEEEecCHHHceeEEEEeCcHHHHHHHHHhhcCCChhHhccc-CCCEEEEeCCccccCCCcCCCCCCcE
Confidence 799999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred EEEecCCCeEEEEcccchhhhHHHHHHHHHHhcccCCeeeeccccccCCCCCEEEEEeCCCCCcccccccCCCceeecCc
Q 011235 284 IDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTDHNRYLIGDDE 363 (490)
Q Consensus 284 i~id~~~~~~~I~Gt~Y~GEmKK~iltl~~~~l~~~G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~~~~~~lI~DD~ 363 (490)
|++|+++++++|+||+|+|||||++||+|||+++++|+||||||||++.+|++++|||||||||||||+|++|.||+||+
T Consensus 160 i~~d~~~~~~vI~Gt~Y~GEiKK~ift~~n~ll~~~g~l~mH~san~~~~gd~alfFGLSGTGKTTLs~d~~r~ligDDe 239 (466)
T PF01293_consen 160 IIFDFERNVAVILGTRYAGEIKKGIFTVMNYLLPRNGVLPMHCSANVGKDGDTALFFGLSGTGKTTLSADPERELIGDDE 239 (466)
T ss_dssp EEEETTTTEEEEES---THHHHHHHHHHHHHHHHHTT-EEEEEEEEEETTSSEEEEEESTTSSHHHHHSBTTSEEEESSE
T ss_pred EEEccccCeEEEECCcccccchHHHHHHHHHhhHhcCeEEEEeeeeeCCCCCeEEEEecCCCCccccccCCcceEEeCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCccccCcceEEeecCCCCCCCcchhhcccccceeeeeEEcCCCCeeecCCCCccccceEEEecccccCCCCCCC
Q 011235 364 HCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCV 443 (490)
Q Consensus 364 ~~wsd~Gvfn~EgGcYaK~~dLs~e~eP~I~~Ai~f~ailENV~lD~~~~~vdf~d~s~T~NtRa~yPi~~i~N~~~~~~ 443 (490)
|+|+++|+||+|||||+||+||+++.||+||+|++|++|+|||++|+++++|||+|+++|+|||++|||++|||+..++.
T Consensus 240 ~~w~d~gv~~~EggcyaKt~~l~~~~ep~i~~ai~~~avlENV~~d~~~~~vd~~d~s~t~N~R~~~p~~~i~n~~~~~~ 319 (466)
T PF01293_consen 240 HGWSDGGVFNFEGGCYAKTIDLSKESEPEIYNAIKFGAVLENVVVDEETREVDFDDDSITENTRAIYPREFIPNAVDPGD 319 (466)
T ss_dssp EEEESSEEEES-SEEEEE-TT--TTTSHHHHHCCSTT-EEES-EEETTTSCEETT--SS-S--EEEEEGGGSSSB-SSSE
T ss_pred eeecCCceEeecCceeeeecCCCcccchhHHHHhccCeeecceEEeCCCCccCCccccccCceeEEEEhhHhhccccccc
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999988888
Q ss_pred CCCccEEEEEEeecCCCCCCccccCHHHHHHHHHhccccccccccc
Q 011235 444 GPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVCAMSL 489 (490)
Q Consensus 444 ~g~P~~IIfLt~DafgvLPPVskLt~eQA~y~FlsGytakvagte~ 489 (490)
++||++||||+||||||||||+|||+||||||||||||+|+||||.
T Consensus 320 ~~~p~~IifLt~Da~gvlPPvskLt~~qa~~~F~~G~t~k~agtE~ 365 (466)
T PF01293_consen 320 GGHPKNIIFLTCDAFGVLPPVSKLTPEQAMYYFLSGYTAKVAGTER 365 (466)
T ss_dssp ES-EEEEEEEE--TTS-S-SEEEE-HHHHHHHHHH-EEEEETTSBT
T ss_pred cCCCCEEEEEECCCCCCCCcceeCCHHHHHHHHHHHHHhhhccccc
Confidence 8999999999999999999999999999999999999999999994
No 7
>PRK09344 phosphoenolpyruvate carboxykinase; Provisional
Probab=100.00 E-value=1e-114 Score=921.35 Aligned_cols=353 Identities=55% Similarity=0.913 Sum_probs=342.9
Q ss_pred hhccCccc-ceeEEcCCHHHHHHHHHhhcCCeEEecCCceEEecCCeecCCCCCeeeecCCCccccccccC----cCccc
Q 011235 134 VSDSSLKF-THVLYNLSPAELYEQAIKYEQGSFIASSGALATLSGAKTGRSPRDKRVVKDETTEHELWWGK----MKNHD 208 (490)
Q Consensus 134 l~~~gl~~-~~v~~Nls~~eL~e~A~~~~~g~~~t~~GaL~~~tG~~TGRSpkdk~iV~~~~t~~~i~wg~----~~e~~ 208 (490)
|...||.+ .+++|||++++|||+|+++++|. +|++|+|+++||++|||||+|||||+++.++++||||+ |++++
T Consensus 8 l~~~g~~~~~~i~~n~~~~~L~e~a~~~~~g~-~t~~Gal~~~tG~~tGRSp~dk~iV~~~~~~~~i~wg~~n~~~~~~~ 86 (526)
T PRK09344 8 LEAYGITNLSNVHYNLSYAELYEEALRRGEGV-LTDTGALAVDTGKFTGRSPKDKFIVRDPSTEDTIWWGDDNKPISPEK 86 (526)
T ss_pred hhhcCCCCcceeEeCCCHHHHHHHHHHcCCCe-eccCCceEEecCCccCCCcCceeeecCccccccccccccCCCCCHHH
Confidence 77889987 79999999999999999999995 99999999999999999999999999999999999998 55432
Q ss_pred --------------ccEEEEEeeecCCCCCeEEEEEEecccchHHHHhhcccCCChHhhccCCCCCEEEEEcCCCCCCcc
Q 011235 209 --------------VQVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRY 274 (490)
Q Consensus 209 --------------~~lyv~D~~vG~d~~~~i~vRvit~~a~~alf~~NLf~rp~~~e~~~~~~pD~tI~~ap~f~~~~~ 274 (490)
++|||+|+++|+||+|+++||++++++||+||++|||++|+.+|++.+ +|||+||++|+|+++|.
T Consensus 87 f~~l~~~~~~~l~~~~lyv~d~~vG~d~~~~~~vrvi~~~a~~~lf~~nlf~~p~~~e~~~~-~Pd~~ii~~p~~~~~~~ 165 (526)
T PRK09344 87 FDALKQKVLAYLSGKDLFVVDGFAGADPEYRLPVRVITELAWHALFVRNLFIRPSEEELASF-EPDFTIINAPKFKADPE 165 (526)
T ss_pred HHHHHHHHHHHhcCCcEEEEeeeecCChhHeeeEEEEecHHHHHHHHhhcCCCCChhHhccC-CCCEEEEEcCCCCCCcc
Confidence 789999999999999999999999999999999999999999999988 99999999999999999
Q ss_pred CCCCCcccEEEEecCCCeEEEEcccchhhhHHHHHHHHHHhcccCCeeeeccccccCCCCCEEEEEeCCCCCcccccccC
Q 011235 275 THYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTDH 354 (490)
Q Consensus 275 ~~g~~s~~~i~id~~~~~~~I~Gt~Y~GEmKK~iltl~~~~l~~~G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~~~ 354 (490)
.+|++|+++|++|+++++++|+||+|+|||||++||+||+++++||+||||||||++.+|++++||||||||||||++++
T Consensus 166 ~~g~~s~~~i~~~~~~~~~~I~Gt~Y~GE~KK~~lt~~~~~l~~rg~l~lH~sa~i~~~g~~~~ffGlSGtGKSTls~~~ 245 (526)
T PRK09344 166 RDGTNSETFIAINFTERIVLIGGTDYAGEMKKSIFSVMNYLLPLKGVLPMHCSANVGEEGDVALFFGLSGTGKTTLSADP 245 (526)
T ss_pred ccCCCCCceEEEecccCeEEEEcchhHHHHHHHHHHHHHHHHHHCCcEeeeCeeecCCCCcEEEEEeecCCCeeeccccC
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred CCceeecCceeecCCCccccCcceEEeecCCCCCCCcchhhcccccceeeeeEEcCCCCeeecCCCCccccceEEEeccc
Q 011235 355 NRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEY 434 (490)
Q Consensus 355 ~~~lI~DD~~~wsd~Gvfn~EgGcYaK~~dLs~e~eP~I~~Ai~f~ailENV~lD~~~~~vdf~d~s~T~NtRa~yPi~~ 434 (490)
++.||+||+|+|+|+|+||+|+|||+||+||+++.||+||+|++|++|+|||++|+ ++.|||+|+++|+|||++||+++
T Consensus 246 ~~~li~DD~~~~~d~gvfn~EgGcyaK~~dL~~~~EP~I~~a~~~gavlENV~~d~-~~~vdf~d~s~T~NtR~~yP~~~ 324 (526)
T PRK09344 246 NRKLIGDDEHGWDDGGVFNFEGGCYAKTINLSEEAEPEIYDAIRFGAVLENVVVDE-DGTVDFDDGSLTENTRAAYPIEH 324 (526)
T ss_pred CcceeccceEEEcCCceEeccceEEEEecCCCccccchHhhhhccCceeeeEEECC-CCcccCCCCcccccceEEEEhHH
Confidence 99999999999999999999999999999999999999999999999999999999 78999999999999999999999
Q ss_pred ccCCCCCCCCCCccEEEEEEeecCCCCCCccccCHHHHHHHHHhccccccccccc
Q 011235 435 IPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVCAMSL 489 (490)
Q Consensus 435 i~N~~~~~~~g~P~~IIfLt~DafgvLPPVskLt~eQA~y~FlsGytakvagte~ 489 (490)
|+|+..++.++||++||||+||+|||||||+||||||||||||||||||+||||.
T Consensus 325 i~n~~~~~~~~~p~~iifLt~Da~gvlPPvskLt~eQA~y~FlsGyTak~agtE~ 379 (526)
T PRK09344 325 IPNAVKPSRAGHPKNIIFLTADAFGVLPPVSKLTPEQAMYHFLSGYTAKVAGTER 379 (526)
T ss_pred hcCccccccCCCCCEEEEEEcCCcCCCCcceeCCHHHHHHHHHcCceeccccccc
Confidence 9999999999999999999999999999999999999999999999999999994
No 8
>cd01919 PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).
Probab=100.00 E-value=3.1e-99 Score=803.97 Aligned_cols=345 Identities=41% Similarity=0.608 Sum_probs=329.1
Q ss_pred eeEEcCCHHHHHHHHHhh-cCCeEEecCCceEEecCCeecCCCCCeeeecCCCccccccc----cC----cCccc-----
Q 011235 143 HVLYNLSPAELYEQAIKY-EQGSFIASSGALATLSGAKTGRSPRDKRVVKDETTEHELWW----GK----MKNHD----- 208 (490)
Q Consensus 143 ~v~~Nls~~eL~e~A~~~-~~g~~~t~~GaL~~~tG~~TGRSpkdk~iV~~~~t~~~i~w----g~----~~e~~----- 208 (490)
.|+||++.++|||+|+++ ++| +++++|+|++.||++|||||+|||||+++.+++.+|| ++ |+++.
T Consensus 2 ~v~~n~~~~~L~e~~~~~~g~~-~~~~~g~l~~~tg~~tgRsp~dkfIv~~~~~~~~~~w~~~w~~~N~~~~~~~~~~~~ 80 (515)
T cd01919 2 HIHINDENGRLLQQMLEEYGIL-RLTKNGALAVTDPRDTGRSPSDKVIVTQDQRRTVPIPKTGLSQLNRWLSEEDFEKAF 80 (515)
T ss_pred ceEECCCHHHHHHHHHHhcCCE-EECCCceEEECCCCccccCCCceEEeCCCccccCccccccccccCCCCCHHHHHHHH
Confidence 589999999999999999 777 5999999999999999999999999999999999995 54 44432
Q ss_pred ----------ccEEEEEeeecCCCCCeEEEEEEecccchHHHHhhcccCCChHhhccCCCCCEEEEEcCCCCCCccC-CC
Q 011235 209 ----------VQVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYT-HY 277 (490)
Q Consensus 209 ----------~~lyv~D~~vG~d~~~~i~vRvit~~a~~alf~~NLf~rp~~~e~~~~~~pD~tI~~ap~f~~~~~~-~g 277 (490)
++|||+|+++|+||.+++++|+||++|||+|||+|||++|..+|++.|++|||++|++|.|++++.. +|
T Consensus 81 ~~~~~~~m~gr~myV~d~~~G~~~~~~~~~r~it~~ay~~lf~~~m~~~p~~~~l~~~~~p~~~ii~~~g~~~~~~~w~g 160 (515)
T cd01919 81 NARFPGLMKGRTLFVVDFFMGPGSPLRLIVRELTDSPYVAAFMRIMTIMPTDEELAAFGDPDVKCLNSVGCPLPLQKWPG 160 (515)
T ss_pred HHHHHHHhcCCCEEEEeceECCCCcccccEEEEEChHHHHHHHHHhccCCChHHHhhCCCCCEEEEeCCCCcCCccCCCC
Confidence 7899999999999999999999999999999999999999989999997799999999999999987 89
Q ss_pred CCcccEEEEecCCCeEEEEcccchhhhHHHHHHHHHHhcccCCeeeeccccccCCCCCEEEEEeCCCCCcccccccCCCc
Q 011235 278 MTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTDHNRY 357 (490)
Q Consensus 278 ~~s~~~i~id~~~~~~~I~Gt~Y~GEmKK~iltl~~~~l~~~G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~~~~~~ 357 (490)
+.|+++|++|+++++++|+||+|+|||||++||+|+++++++|+|+||||++++++|++++||||||||||||++++++.
T Consensus 161 ~~s~~~I~~~~~~~~i~i~Gt~Y~Ge~KK~~l~~~~~l~~~~g~L~~H~s~~~~~~g~~~~~~GlSGtGKTTLa~~~~~~ 240 (515)
T cd01919 161 LPSLTLVAHNPDRREQIIFGTGYGGEMKKGFLRMMSRLAPEEGWLAMHMSANVGTNGDVLVFFGLSGTGKTTLSMDPKRE 240 (515)
T ss_pred CCCCcEEEEEcccCEEEEecCccccchHHHHHHHHHHHHHhcCceeeeceeeccCCCCEEEEEecccCCCcccccCCCcC
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred eeecCceeecCCCccccCcceEEeecCCCCCCCcchhhcccccceeeeeEEcCCCCeeecCCCCccccceEEEecccccC
Q 011235 358 LIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPN 437 (490)
Q Consensus 358 lI~DD~~~wsd~Gvfn~EgGcYaK~~dLs~e~eP~I~~Ai~f~ailENV~lD~~~~~vdf~d~s~T~NtRa~yPi~~i~N 437 (490)
+|+||++.|+++|+||+|+|||+||+||+++.||+||+|++|++|+|||.+|++ +.|+|+|.++|+|+|++||+++|||
T Consensus 241 ligDD~~~w~~~gv~N~EgGcyak~~gls~e~eP~i~~ai~~~aileNV~~d~~-g~v~~~~~s~t~NtR~~yP~~~i~n 319 (515)
T cd01919 241 LIGDDEHWWKDDGVFNPEGGCYAKAIGLSVKTEPNIYKAIRKNAIFENVAETSD-GGIDFEDISAHPNTRVCYPASHIPI 319 (515)
T ss_pred eecccEEEEeCCCEEecCCceEEEecCCCcccCHHHHHHhcCCcEEEeeeEcCC-CCEeCCCCCCCchheEEeEHHhCCC
Confidence 999999999999999999999999999999999999999999999999999995 6889999999999999999999999
Q ss_pred CCCC-CCCCCccEEEEEEeecCCCCCCccccCHHHHHHHHHhccccccccccc
Q 011235 438 AKIP-CVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVCAMSL 489 (490)
Q Consensus 438 ~~~~-~~~g~P~~IIfLt~DafgvLPPVskLt~eQA~y~FlsGytakvagte~ 489 (490)
+..+ ..++||++||||+||||||||||+||++|||||||+||||+|+||||.
T Consensus 320 ~~~~~~~g~~~~~IiFltrda~gvlPpV~~lt~eqavy~f~sg~T~ktAgtea 372 (515)
T cd01919 320 IDAAWESAGHIEGVIFLTRDAFGVVPPVYRLTWQQGVFVFAAGRTAATAGTEA 372 (515)
T ss_pred CCCccccCCCccEEEEEecCCCCCCCcEEEccHHHHHHHHHhhhhhhhcchhc
Confidence 9766 457899999999999999999999999999999999999999999873
No 9
>cd00819 PEPCK_GTP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the GTP-dependent group.
Probab=99.92 E-value=1.3e-23 Score=225.07 Aligned_cols=319 Identities=19% Similarity=0.254 Sum_probs=232.9
Q ss_pred ccceeEEcC-CHHH---HHHHHHhhcCCeEEec-CCceEEecC-CeecCCCCCeeeecCCCcc--ccccccC---cCcc-
Q 011235 140 KFTHVLYNL-SPAE---LYEQAIKYEQGSFIAS-SGALATLSG-AKTGRSPRDKRVVKDETTE--HELWWGK---MKNH- 207 (490)
Q Consensus 140 ~~~~v~~Nl-s~~e---L~e~A~~~~~g~~~t~-~GaL~~~tG-~~TGRSpkdk~iV~~~~t~--~~i~wg~---~~e~- 207 (490)
.|.+||+.. |.+| |.+++++.++-..+.. -|..++.|. .=..|.=+.+||.-+...+ ....|-. |.++
T Consensus 13 ~Pd~v~~cdGS~ee~~~l~~~~v~~G~~~~L~~~~~~~l~rs~p~DvARve~rTfI~s~~~~dagp~nnw~~p~e~~~~l 92 (579)
T cd00819 13 QPDSVYICDGSEEEYDRLRDLMVEQGEEIRLNKYPNSYLARSDPSDVARVESRTFICSEDEEDAGPTNNWMDPEEMKAEL 92 (579)
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHhcCcEeeCCCCCCCEEEeCCccccceeccceEEecCchhccCCccccCCHHHHHHHH
Confidence 368999876 4443 6667776533322211 233333332 2245555566888754433 2334643 2211
Q ss_pred ---------cccEEEEEeeecC-CCCCeEEEEEEecccchHHHHhhcccCCChHhhccCCCCCEE--EEEcCC-------
Q 011235 208 ---------DVQVFVNDQFLNW-DPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFT--IYNAGQ------- 268 (490)
Q Consensus 208 ---------~~~lyv~D~~vG~-d~~~~i~vRvit~~a~~alf~~NLf~rp~~~e~~~~~~pD~t--I~~ap~------- 268 (490)
-|.|||.-=.+|- .+.+....-.||+++|..+.|+-|. |-....+...+..+|+ |++...
T Consensus 93 ~~lf~G~M~GRTMYVipfsmGP~gSp~s~~gVqiTDS~YVv~sm~imt-R~g~~vl~~lg~~~Fv~~vHSvG~pl~~~~~ 171 (579)
T cd00819 93 KELFKGCMRGRTMYVIPFSMGPLGSPISKIGVELTDSPYVVHSMRIMT-RMGKAVLDALGEGEFVPCLHSVGAPLSAGQK 171 (579)
T ss_pred HhhCCcccCCCeEEEEeeecCCCCCCcccceEEEeCCHHHHHhHHHHH-hcCHHHHHhcCcCCeeeeeccCCCcCCCCCC
Confidence 2899997666665 7778888899999999999877544 5555666555445665 333332
Q ss_pred --CCCCccCCCCCcccEEEEecCCCeEEEEcccchhhh---HHHH-HHHHHHhcccCCeeeeccccccC---CCCCEEEE
Q 011235 269 --FPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEM---KKGL-FSVMHYLMPKRQILSLHSGCNMG---KDGDVALF 339 (490)
Q Consensus 269 --f~~~~~~~g~~s~~~i~id~~~~~~~I~Gt~Y~GEm---KK~i-ltl~~~~l~~~G~L~~H~sani~---~~g~~~lf 339 (490)
|++|+ ..+.|+++++.++|+..|+.|.|+- ||.. |+++.++..++|+|+.|+-. ++ .+|+...|
T Consensus 172 ~~wpcn~------~~~~I~h~pe~~~I~S~gSgYGGNaLlgKKcfaLRiAs~~ar~eGWLAEHMlI-lgvt~P~G~~~yv 244 (579)
T cd00819 172 DVWPCNP------EKKYIVHFPEEREIWSFGSGYGGNALLGKKCFALRIASVMARDEGWLAEHMLI-LGVTNPEGEKKYF 244 (579)
T ss_pred CCCCCCC------CccEEEEEcCCCeEEEecCCcCCCcccchhHHHHHHHHHHhHhcCcHHHhhHH-heeeCCCCCEEEE
Confidence 33322 2478999999999999999999996 9997 99999999999999999974 43 56777666
Q ss_pred Ee--CCCCCcccccc-cC---C--CceeecCcee--ecCCCcc---ccCcceEEeecCCCCCCCcchhhcccccceeeee
Q 011235 340 FG--LSGTGKTTLST-DH---N--RYLIGDDEHC--WGDNGVS---NIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENV 406 (490)
Q Consensus 340 fG--lSGtGKTTLs~-~~---~--~~lI~DD~~~--wsd~Gvf---n~EgGcYaK~~dLs~e~eP~I~~Ai~f~ailENV 406 (490)
.| +|+||||+|++ .| + -.+|+||+.- +.+||.. |.|.|+|..+.|.+.+..|.++++++-++|+.||
T Consensus 245 aaAFPSaCGKTnlAMl~p~~~gwkv~~vGDDIAwm~~~~dG~l~AINPE~GfFGVapGtn~~tnP~am~~l~~n~IFTNV 324 (579)
T cd00819 245 AAAFPSACGKTNLAMLIPPLPGWKVETVGDDIAWMKFGEDGRLYAINPEAGFFGVAPGTNAKTNPNAMATLHKNTIFTNV 324 (579)
T ss_pred EEEcccccccccHhhcCCCCCCceeEEeccceeeeEECCCCcEEEEcCCCCeeEeCCCCCCCcCHHHHHHhcCCceEEEE
Confidence 66 99999999998 32 2 3489999864 3367964 8999999999999999999999999999999999
Q ss_pred EEcCCCCeeecCCCCc-------------------------cccceEEEecccccCCC--CCCCCCCccEEEEEE-eecC
Q 011235 407 VFDEHTREVDYSDKSV-------------------------TENTRAAYPIEYIPNAK--IPCVGPHPKNVILLA-CDAF 458 (490)
Q Consensus 407 ~lD~~~~~vdf~d~s~-------------------------T~NtRa~yPi~~i~N~~--~~~~~g~P~~IIfLt-~Daf 458 (490)
.++++ +.|-|.+... +.|+|.+.|+...|++. .+...|.|++.|++. +| .
T Consensus 325 a~t~D-G~vwWeG~~~e~p~~~~~w~~~G~~w~~~~~~paAHPNsRFt~p~~q~p~idp~wedP~GVpI~aiiFGGRr-~ 402 (579)
T cd00819 325 ALTED-GDVWWEGLTEEPPEHLTDWQGLGKRWTPGDGEPAAHPNSRFTAPASQCPNIDPEWENPEGVPIDAIIFGGRR-P 402 (579)
T ss_pred eEcCC-CCeeCCCCCCCCCCceeeccCCCCCCCCCCCCcCCCCcccccccHHHCCcCCccccCCCCCEEEEEEECCcC-C
Confidence 99886 4787776544 89999999999999985 445668899888777 55 5
Q ss_pred CCCCCccccC
Q 011235 459 GVLPPVSKLN 468 (490)
Q Consensus 459 gvLPPVskLt 468 (490)
..+|+|....
T Consensus 403 ~tvPlV~ea~ 412 (579)
T cd00819 403 DTVPLVYEAF 412 (579)
T ss_pred CCCCeEEEcc
Confidence 6889998654
No 10
>PRK04210 phosphoenolpyruvate carboxykinase; Provisional
Probab=99.90 E-value=2.8e-22 Score=215.24 Aligned_cols=323 Identities=18% Similarity=0.210 Sum_probs=227.5
Q ss_pred ccceeEEcC-CHH---HHHHHHHhhcCCeEEecC------CceEEecCC-eecCCCCCeeeecCCCcc--ccccccC---
Q 011235 140 KFTHVLYNL-SPA---ELYEQAIKYEQGSFIASS------GALATLSGA-KTGRSPRDKRVVKDETTE--HELWWGK--- 203 (490)
Q Consensus 140 ~~~~v~~Nl-s~~---eL~e~A~~~~~g~~~t~~------GaL~~~tG~-~TGRSpkdk~iV~~~~t~--~~i~wg~--- 203 (490)
.|..||++- |.+ .|.+++++. |+ +... +...+.|.. =..|.=..+||.-+...+ ....|-.
T Consensus 25 ~Pd~v~~cdGS~ee~~~l~~~~v~~--G~-~~~L~~~k~~~~~~~rsdp~DvARve~rTfI~s~~~~dagp~nnw~~p~e 101 (601)
T PRK04210 25 QPDRVVWCDGSEEEYDRLRDQAVEA--GT-EIKLNPEKRPNSFLARSDPSDVARVEDRTFICSEKEEDAGPTNNWMDPAE 101 (601)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHc--CC-EeeccCCCCCceeeccCChhhhhhcccceEEecCchhhcCCccCcCCHHH
Confidence 378999977 544 377777765 43 2222 222222221 134444456887764433 2334644
Q ss_pred cCcc----------cccEEEEEeeecC-CCCCeEEEEEEecccchHHHHhhcccCCChHhhccCC-CCCEE--EEEcCCC
Q 011235 204 MKNH----------DVQVFVNDQFLNW-DPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFG-TPDFT--IYNAGQF 269 (490)
Q Consensus 204 ~~e~----------~~~lyv~D~~vG~-d~~~~i~vRvit~~a~~alf~~NLf~rp~~~e~~~~~-~pD~t--I~~ap~f 269 (490)
|.++ -|.|||.-=.+|- .+.+....-.||+++|..+.|+-| .|-..+.++..+ ..+|+ |++...-
T Consensus 102 ~~~~l~~lf~G~M~GRTMyVipfsmGP~gSp~s~~gVqiTDS~YVv~sm~im-tR~g~~~l~~l~~~~~Fv~~vHSvG~p 180 (601)
T PRK04210 102 MRETLKGLFKGCMRGRTMYVVPFSMGPLGSPFAKIGVEITDSPYVVHSMRIM-TRMGKAVLDVLGEDGEFVPCVHSVGAP 180 (601)
T ss_pred HHHHHHHhcCCccCCCeEEEeeeeeCCCCCCcccceEEeeCCHHHHHhHHHH-HhccHHHHHhhCCCCceeeeeccCCCC
Confidence 2221 2899997655555 778888899999999999987754 455566665554 34665 3444321
Q ss_pred CCCccCC---CCCcccEEEEecCCCeEEEEcccchhhh----HHHHHHHHHHhcccCCeeeeccccccC---CCCCEEEE
Q 011235 270 PCNRYTH---YMTSSTSIDLNLARREMVILGTQYAGEM----KKGLFSVMHYLMPKRQILSLHSGCNMG---KDGDVALF 339 (490)
Q Consensus 270 ~~~~~~~---g~~s~~~i~id~~~~~~~I~Gt~Y~GEm----KK~iltl~~~~l~~~G~L~~H~sani~---~~g~~~lf 339 (490)
......+ ..+.+..|+.-++.++|+..|++|.|+- ||..|+++.++..++|+|+.|+-. ++ .+|++..|
T Consensus 181 ~~~~~~~v~wpcn~~r~i~h~pe~~~I~S~gSgYgGNaLLGkKc~ALRiAs~~ar~eGWLAEHMlI-lgvt~P~G~~~yv 259 (601)
T PRK04210 181 LEPGQKDVPWPCNDTKYIVHFPETREIWSYGSGYGGNALLGKKCFALRIASVMARDEGWLAEHMLI-LGVTSPEGRKTYF 259 (601)
T ss_pred CCCCCCCCCCCCCCCeEEEEeCCCcEEEEecCCCCCCccchhHHHHHHHHHHHhHhcccHHHhhHH-heeeCCCCCEEEE
Confidence 1100000 1112344444456779999999999994 999999999999999999999974 43 67888777
Q ss_pred Ee--CCCCCccccccc-C---CC--ceeecCceee--cCCCcc---ccCcceEEeecCCCCCCCcchhhcccc-cceeee
Q 011235 340 FG--LSGTGKTTLSTD-H---NR--YLIGDDEHCW--GDNGVS---NIEGGCYAKCIDLSREKEPDIWNAIKF-GAVLEN 405 (490)
Q Consensus 340 fG--lSGtGKTTLs~~-~---~~--~lI~DD~~~w--sd~Gvf---n~EgGcYaK~~dLs~e~eP~I~~Ai~f-~ailEN 405 (490)
.| +|+||||+|++. + +- ..||||+.-+ ..||.+ |.|.|+|..+.|.+.+..|.++++++. ++|+.|
T Consensus 260 aaAFPSaCGKTnlAMl~p~~~gwkv~~VGDDIAwm~~~~dG~l~AiNPE~GfFGVapGtn~~tnP~am~~l~~~n~IFTN 339 (601)
T PRK04210 260 AAAFPSACGKTNLAMLIPPIPGWKVETVGDDIAWIRPGEDGRLYAINPEAGFFGVAPGTNEKTNPNAMATLKPGNVIFTN 339 (601)
T ss_pred EEecccccccccHhhcCCCCCCceeEEeecceeeeeECCCCcEEEEccCCCeeEeCCCCCCCcCHHHHHhcccCCeEEee
Confidence 76 999999999993 2 22 3799998643 379964 889999999999999999999999987 999999
Q ss_pred eEEcCCCCeeecCCCC-----------------------ccccceEEEecccccCCC--CCCCCCCccEEEEEEeecCCC
Q 011235 406 VVFDEHTREVDYSDKS-----------------------VTENTRAAYPIEYIPNAK--IPCVGPHPKNVILLACDAFGV 460 (490)
Q Consensus 406 V~lD~~~~~vdf~d~s-----------------------~T~NtRa~yPi~~i~N~~--~~~~~g~P~~IIfLt~Dafgv 460 (490)
|.++++ +.|-+.+.. .+.|+|.+.|+...||+. .+...|.|++.|++.-+....
T Consensus 340 Valt~D-G~vwWeG~~~~~P~~~~dw~G~~W~p~~~~paaHPNsRFt~p~~q~p~idp~wedP~GVpIsaiiFGGRr~~t 418 (601)
T PRK04210 340 VALTDD-GDVWWEGMTEEPPAHLIDWQGNDWTPGSGEPAAHPNARFTVPASQCPNLDPEWEDPAGVPISAIIFGGRRSDT 418 (601)
T ss_pred eEECCC-CCeecCCCCCCCCCcccccCCCcCCCCCCCCCCCCccceeccHHHCCcCCccccCCCCCEEEEEEECCcCCCC
Confidence 999885 467665443 789999999999999985 446679999888877333678
Q ss_pred CCCccccC
Q 011235 461 LPPVSKLN 468 (490)
Q Consensus 461 LPPVskLt 468 (490)
+|||....
T Consensus 419 ~PlV~ea~ 426 (601)
T PRK04210 419 VPLVTEAF 426 (601)
T ss_pred CCeeEEcc
Confidence 89998654
No 11
>PF00821 PEPCK: Phosphoenolpyruvate carboxykinase; InterPro: IPR008209 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate. The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria []. Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding []. With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels []. PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another [, ]. Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site []. PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents GTP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004611 phosphoenolpyruvate carboxykinase activity, 0005525 GTP binding, 0006094 gluconeogenesis; PDB: 2FAH_A 2FAF_A 2QZY_B 2ZCI_D 3MOE_A 3DT7_B 2RKD_A 2RKA_A 2RK8_A 2QF2_B ....
Probab=99.86 E-value=4.8e-21 Score=206.15 Aligned_cols=325 Identities=18% Similarity=0.239 Sum_probs=206.0
Q ss_pred ccceeEEcC-CHH---HHHHHHHhhcCCeEEecCC----ceEEecCCeecCCCCCeeeecCCCcc--ccccccC---cCc
Q 011235 140 KFTHVLYNL-SPA---ELYEQAIKYEQGSFIASSG----ALATLSGAKTGRSPRDKRVVKDETTE--HELWWGK---MKN 206 (490)
Q Consensus 140 ~~~~v~~Nl-s~~---eL~e~A~~~~~g~~~t~~G----aL~~~tG~~TGRSpkdk~iV~~~~t~--~~i~wg~---~~e 206 (490)
.|..||+.- |.+ +|.+++++.++-..+...+ -|....-.=.+|.-..+||.-+...+ ....|-. |..
T Consensus 11 ~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~~~~~~n~~l~~sdp~DvARve~~TfI~t~~~~d~~p~~nw~~~~~~~~ 90 (586)
T PF00821_consen 11 QPDSIYICDGSEEENDRLRDELVEQGEEIPLNPPKHPNCYLHRSDPSDVARVESRTFICTEDKEDAGPTNNWMDPEEMKA 90 (586)
T ss_dssp -BSEEEE----HHHHHHHHHHHHHTTSEEEE-TTTSBSEEEE---TTSSS--GGGEEEE-SSHHHHSTTSSEE-HHHHHH
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHcCCEEeCCCCCCCCcEEEecCccccceecCceEEEcCCccccCCccCCCCHHHHHH
Confidence 367888755 444 4667776542222221112 22222222356666677888665433 2334644 211
Q ss_pred c----------cccEEEEEeeecC-CCCCeEEEEEEecccchHHHHhhcccCCChHhhccCC-CCCEE--EEEcCC----
Q 011235 207 H----------DVQVFVNDQFLNW-DPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFG-TPDFT--IYNAGQ---- 268 (490)
Q Consensus 207 ~----------~~~lyv~D~~vG~-d~~~~i~vRvit~~a~~alf~~NLf~rp~~~e~~~~~-~pD~t--I~~ap~---- 268 (490)
+ -|.|||.-=.+|- ...+....-.+|+++|..+.|+-| .|-..+.+...+ ..+|+ |++...
T Consensus 91 ~l~~~f~G~M~GRtMyVipfsmGP~gsp~s~~gVqlTDS~YVv~sm~im-tR~g~~v~~~l~~~~~Fv~~vHSvG~pl~~ 169 (586)
T PF00821_consen 91 ELDELFPGCMKGRTMYVIPFSMGPIGSPFSKIGVQLTDSPYVVHSMRIM-TRMGYAVLDRLGDDGEFVRCVHSVGAPLPP 169 (586)
T ss_dssp HHHCCSTTTTTTSEEEEEEEEESSTTSTT-EEEEEEES-HHHHHHHHHH-SEESHHHHHHHTTT--SEEEEEE-S--SST
T ss_pred HHHHhchhhhhhchHHhhHhhhCCCCCCCccceEEccCcHHHHHhHHHH-HhcCHHHHHHhCCCCceEeeecccCCcCCC
Confidence 1 2899997666665 888888899999999999987754 455555554443 33664 555542
Q ss_pred ------CCCCccCCCCCcccEEEEecCCCeEEEEcccchhh---hHH-HHHHHHHHhcccCCeeeeccccccC---CCCC
Q 011235 269 ------FPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGE---MKK-GLFSVMHYLMPKRQILSLHSGCNMG---KDGD 335 (490)
Q Consensus 269 ------f~~~~~~~g~~s~~~i~id~~~~~~~I~Gt~Y~GE---mKK-~iltl~~~~l~~~G~L~~H~sani~---~~g~ 335 (490)
|++|+ ..++|+.++++++|+..|+.|.|+ .|| ..|+++.++..++|+|+.|+-. ++ .+|+
T Consensus 170 ~~~~~~wpcn~------~~~~I~h~p~~~~I~S~gsgYGGNaLlgKKc~aLRiAs~~ar~eGWLAEHMlI-lgit~P~G~ 242 (586)
T PF00821_consen 170 GQKDVNWPCNP------DKRYIVHFPEEREIWSFGSGYGGNALLGKKCFALRIASVIARDEGWLAEHMLI-LGITNPEGR 242 (586)
T ss_dssp SS--BTB---G------GG-EEEEECCCTEEEEES--SHHHHSTCCCCCCCHHHHHHHHHHT-EEESEEE-EEEE-TTS-
T ss_pred CCCCCCCCCCc------cceEEEEECCCCeEEEeCCCcCcchhhhhhhhhHHHHHHHHHhhhHHhhhhhe-eeEecCCCC
Confidence 33332 358999999999999999999999 899 8999999999999999999985 43 6799
Q ss_pred EEEEEe--CCCCCccccccc-C---CC--ceeecCcee--ecCCCcc---ccCcceEEeecCCCCCCCcchhhcccccce
Q 011235 336 VALFFG--LSGTGKTTLSTD-H---NR--YLIGDDEHC--WGDNGVS---NIEGGCYAKCIDLSREKEPDIWNAIKFGAV 402 (490)
Q Consensus 336 ~~lffG--lSGtGKTTLs~~-~---~~--~lI~DD~~~--wsd~Gvf---n~EgGcYaK~~dLs~e~eP~I~~Ai~f~ai 402 (490)
+..|.| +|+||||+|++. | +- ..||||+.- ++.||.. |.|.|+|.-.-|.+.+..|.+++++.-++|
T Consensus 243 ~~yiaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dG~lrAiNPE~GfFGVapGtn~~tnP~am~~l~~ntI 322 (586)
T PF00821_consen 243 KTYIAAAFPSACGKTNLAMLQPTLPGWKVETVGDDIAWMRFGEDGRLRAINPENGFFGVAPGTNMKTNPNAMATLGKNTI 322 (586)
T ss_dssp EEEEEEE-TTTSSHHHHHT---SSTT-EEEEEESS-EEEEE-TTSBEEEE---SEEEEE-TT-STTT-HHHHHHTTBSEE
T ss_pred EEEEEEecCcccccccHHhcCCCCCCcEEEEeeccchheeEcCCCcEEEeecccceEEeccCCCCCCCHHHHHHhhccce
Confidence 988886 999999999993 2 22 379999853 4489964 999999999999999999999999999999
Q ss_pred eeeeEEcCCCCeeecC--------------CC---------CccccceEEEecccccCCC--CCCCCCCccEEEEEE-ee
Q 011235 403 LENVVFDEHTREVDYS--------------DK---------SVTENTRAAYPIEYIPNAK--IPCVGPHPKNVILLA-CD 456 (490)
Q Consensus 403 lENV~lD~~~~~vdf~--------------d~---------s~T~NtRa~yPi~~i~N~~--~~~~~g~P~~IIfLt-~D 456 (490)
+-||.+++++ .|-+. +. .-+.|+|.+.|+...||+. .+...|.|++.|++. +|
T Consensus 323 FTNVa~t~dG-~vwWeG~~~~~p~~~~dw~G~~W~~~~~~paaHPNsRft~pa~qcp~i~p~wedp~GVpIsaiiFGGRr 401 (586)
T PF00821_consen 323 FTNVALTDDG-DVWWEGMDEEPPEHLIDWQGEPWTPESGEPAAHPNSRFTAPASQCPNIDPEWEDPKGVPISAIIFGGRR 401 (586)
T ss_dssp EES-EEETTS--EE-TT-SS---T-EE-TTSSEE-TTSSS-SS-TT-EEEEEGGGSTTB-TTTT-TT-EEEEEEEEEEBB
T ss_pred EeeeeecCCC-ceeeccCCCCCCcccccCCCCcCCCCCCCCCCCCcccccCCHhHCCCCCccccCCCcceEEEEEEeccC
Confidence 9999999864 66333 22 5679999999999999985 345678899777766 66
Q ss_pred cCCCCCCcc-ccCHHHHHH
Q 011235 457 AFGVLPPVS-KLNLAQTMY 474 (490)
Q Consensus 457 afgvLPPVs-kLt~eQA~y 474 (490)
...+|+|. -++-+...+
T Consensus 402 -~~tvPlV~ea~~W~HGV~ 419 (586)
T PF00821_consen 402 -SDTVPLVYEAFNWQHGVF 419 (586)
T ss_dssp -SSSS-SEEE-SSHHHHHH
T ss_pred -CCCCCceEEccCCCceeE
Confidence 45678887 456766655
No 12
>COG1274 PckA Phosphoenolpyruvate carboxykinase (GTP) [Energy production and conversion]
Probab=99.72 E-value=1.3e-16 Score=168.28 Aligned_cols=324 Identities=18% Similarity=0.199 Sum_probs=219.1
Q ss_pred ccceeEE-cCCHHH---HHHHHHhhcCCeEEe---cCCceEEecC-CeecCCCCCeeeecCC--CccccccccC---cCc
Q 011235 140 KFTHVLY-NLSPAE---LYEQAIKYEQGSFIA---SSGALATLSG-AKTGRSPRDKRVVKDE--TTEHELWWGK---MKN 206 (490)
Q Consensus 140 ~~~~v~~-Nls~~e---L~e~A~~~~~g~~~t---~~GaL~~~tG-~~TGRSpkdk~iV~~~--~t~~~i~wg~---~~e 206 (490)
.+..|+. .=|.+| |.+++++.++-..+- .-+..++.|. .=..|.-..+||.-.. ..-....|-. |.+
T Consensus 32 ~P~~V~~cdGS~eE~~~l~~~~v~aG~~i~Ln~~~~pn~~l~~s~psDvAR~e~rTfI~s~~~~~agPtnNw~~p~e~~~ 111 (608)
T COG1274 32 EPDDVVVCDGSPEEYDYLCWKMVEAGEEIKLNPEKHPNSYLARSNPSDVARVEERTFICSPKEEDAGPTNNWMDPQEMRS 111 (608)
T ss_pred CCCeEEEeCCCHHHHHHHHHHHHhcCceeecCcccCCCceEeecChhhhhhhhhceeeecccccccCCccCCCCHHHHHH
Confidence 3666665 445544 444455443332222 1133333332 2234555566877643 2222334544 221
Q ss_pred c----------cccEEEEEeeecC-CCCCeEEEEEEecccchHHHHhhcccCCChHhhccCC-CCCEE--EEEcCCCCCC
Q 011235 207 H----------DVQVFVNDQFLNW-DPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFG-TPDFT--IYNAGQFPCN 272 (490)
Q Consensus 207 ~----------~~~lyv~D~~vG~-d~~~~i~vRvit~~a~~alf~~NLf~rp~~~e~~~~~-~pD~t--I~~ap~f~~~ 272 (490)
+ -|.|||+--.+|- ++.+.+....+|+++|..+.|+- ..|=-.++++..| ...|+ +.++..-.+.
T Consensus 112 ~m~~l~~G~MrGrtmyVvpf~mGP~~Spf~~~gVeiTDS~YVv~sm~i-mtRmG~~vl~~lG~~g~Fvk~vHSvG~pL~p 190 (608)
T COG1274 112 EMNELFRGCMRGRTMYVVPFCMGPLNSPFTILGVELTDSPYVVHSMRI-MTRMGKEVLEKLGDDGNFVKCVHSVGKPLDP 190 (608)
T ss_pred HHHHHHHhhhcCceEEEEeeeeCCCCCCcccceeEeecCceeeeehHH-HHHHHHHHHHhcCCCCceeeeeeccCCCCCC
Confidence 1 2899997766665 88999999999999999886654 3444556665553 22354 4444431111
Q ss_pred ccCCC---CCcccEEEEecCCCeEEEEcccchhh---hHH-HHHHHHHHhcccCCeeeecccc-cc-CCCCCEEEEEe--
Q 011235 273 RYTHY---MTSSTSIDLNLARREMVILGTQYAGE---MKK-GLFSVMHYLMPKRQILSLHSGC-NM-GKDGDVALFFG-- 341 (490)
Q Consensus 273 ~~~~g---~~s~~~i~id~~~~~~~I~Gt~Y~GE---mKK-~iltl~~~~l~~~G~L~~H~sa-ni-~~~g~~~lffG-- 341 (490)
...+. .+.--.|.+-++.+.|+..|+.|.|+ .|| -.|+++.++..++|||+.|+-. .+ +.+|+...|.|
T Consensus 191 g~~dv~wPcn~~k~i~hfped~~v~S~gsgYGGNall~KKC~ALRias~~A~~EGWLAEHMlil~v~~PeGk~~yftaAF 270 (608)
T COG1274 191 GQKDVAWPCNETKYIRHFPEDREVWSFGSGYGGNALLGKKCLALRIASVMARDEGWLAEHMLILGVTNPEGKKYYFTAAF 270 (608)
T ss_pred CcccCcCCcccccceeecCCCcceEeecCCccchhhhhhhHHHHHHHHHHhhhhhhHhhhheeeEecCCCCceEEEEeec
Confidence 11111 01012233345589999999999998 799 7999999999999999999985 22 36788999999
Q ss_pred CCCCCccccccc-C---C--CceeecCceeec--CCCc-c--ccCcceEEeecCCCCCCCcchhhccc-ccceeeeeEEc
Q 011235 342 LSGTGKTTLSTD-H---N--RYLIGDDEHCWG--DNGV-S--NIEGGCYAKCIDLSREKEPDIWNAIK-FGAVLENVVFD 409 (490)
Q Consensus 342 lSGtGKTTLs~~-~---~--~~lI~DD~~~ws--d~Gv-f--n~EgGcYaK~~dLs~e~eP~I~~Ai~-f~ailENV~lD 409 (490)
+|+||||.|++- | + -.+|+||+.-+- .||. | |.|.|+|.-.-+.+....|-+|+.++ -.+|+-||.|.
T Consensus 271 PSacGKTnlAMi~p~~pGWk~~~igDDIawik~~~DG~lyAvNPE~GfFGVapGtn~~tnpnam~tl~~~n~IFTNV~lT 350 (608)
T COG1274 271 PSACGKTNLAMIPPTIPGWKAETIGDDIAWIKFGKDGRLYAVNPEIGFFGVAPGTNEKTNPNAMATLHSGNTIFTNVALT 350 (608)
T ss_pred ccccCccchhhcCCCCCCcceeeccCceeeeeccCCCceEeeccccceEEeecCCCccCChhHHHHhccCceEEeeeeec
Confidence 999999999993 3 2 358999986544 7884 4 99999999999999999999999997 79999999998
Q ss_pred CCCCeeecCC------------------------CCccccceEEEecccccCCC--CCCCCCCccEEEEEEeecCCCCCC
Q 011235 410 EHTREVDYSD------------------------KSVTENTRAAYPIEYIPNAK--IPCVGPHPKNVILLACDAFGVLPP 463 (490)
Q Consensus 410 ~~~~~vdf~d------------------------~s~T~NtRa~yPi~~i~N~~--~~~~~g~P~~IIfLt~DafgvLPP 463 (490)
++ +.|-+.. ..-+.|+|.+.|++..|++. -+..-|.|++.|++.-++...+|+
T Consensus 351 ~D-GdvwWEG~~~~~p~~l~dw~G~~w~~~~~g~paAHpNsRft~pl~~~P~ld~ew~dP~GVpi~aiiFGgRr~~TvPl 429 (608)
T COG1274 351 DD-GDVWWEGLEGEPPEELIDWKGNDWRPGETGEPAAHPNSRFTVPLSQCPNLDPEWDDPEGVPIDAIIFGGRRPTTVPL 429 (608)
T ss_pred CC-CCccccCCCCCCccccccCCCCccCCCCCCCCCCCCCcccccchhhCCccCccccCCCCceEeeEEecCcCCcccCc
Confidence 75 4553321 14578999999999999984 334558899877777444668888
Q ss_pred cc
Q 011235 464 VS 465 (490)
Q Consensus 464 Vs 465 (490)
|-
T Consensus 430 V~ 431 (608)
T COG1274 430 VT 431 (608)
T ss_pred ee
Confidence 74
No 13
>KOG3749 consensus Phosphoenolpyruvate carboxykinase [Energy production and conversion]
Probab=99.04 E-value=1.2e-09 Score=115.88 Aligned_cols=240 Identities=23% Similarity=0.299 Sum_probs=174.4
Q ss_pred ccEEEEEeeecC--CCCCeEEEEEEecccchHHHHhhcccC--CChHhhccCCCCCEE--EEEc--C---------CCCC
Q 011235 209 VQVFVNDQFLNW--DPQNRVKVRIVSARAYHSLFMHNMCIR--PTPEELENFGTPDFT--IYNA--G---------QFPC 271 (490)
Q Consensus 209 ~~lyv~D~~vG~--d~~~~i~vRvit~~a~~alf~~NLf~r--p~~~e~~~~~~pD~t--I~~a--p---------~f~~ 271 (490)
|.|||+---+|- .|...+-+ .+|+++|.-+.||-|+.. |..+.+ +..||+ +... | .|++
T Consensus 155 RtMYVvPFSMGpvGsplskiGi-qlTDspyvV~smRimtR~g~~Vl~~l---~~~dFvrClHSVG~Prp~~~~~v~~wpc 230 (640)
T KOG3749|consen 155 RTMYVVPFSMGPVGSPLSKIGI-QLTDSPYVVLSMRIMTRMGTPVLDAL---GDGDFVRCLHSVGMPRPGQQKIVNPWPC 230 (640)
T ss_pred ceEEEEeeccCCCCCcchhcee-EecCCceeeeehhHHHHhccHHHHHh---cccchhhhhhhcCCCCCcccCCCCCCCC
Confidence 889999877776 55555544 679999999999988865 333433 344553 2111 1 2555
Q ss_pred CccCCCCCcccEEEEecCCCeEEEEcccchhh---hHHH-HHHHHHHhcccCCeeeeccccccC---CCCCEEE--EEeC
Q 011235 272 NRYTHYMTSSTSIDLNLARREMVILGTQYAGE---MKKG-LFSVMHYLMPKRQILSLHSGCNMG---KDGDVAL--FFGL 342 (490)
Q Consensus 272 ~~~~~g~~s~~~i~id~~~~~~~I~Gt~Y~GE---mKK~-iltl~~~~l~~~G~L~~H~sani~---~~g~~~l--ffGl 342 (490)
+|+. ++|..-+.+++++.-|..|.|+ -||. .|+++..+..++|||..|+-. ++ ..|+... ..=+
T Consensus 231 nPe~------t~i~hkp~e~EI~s~GsgyGgnsllGkKcFalriaS~iak~eGWLAEhmlI-lgITnP~g~k~~iaaafp 303 (640)
T KOG3749|consen 231 NPER------TLIAHKPDEREIWSFGSGYGGNSLLGKKCFALRIASRLAKDEGWLAEHMLI-LGITNPKGEKKYIAAAFP 303 (640)
T ss_pred Ccce------eEEeecCccceeeeeccCCCCCccccchhhhhhhhhhhhhhhhhHHHhHHH-hcccCCCCCceEEEEecc
Confidence 5544 7888889999999999999998 3444 566667888999999999984 44 4566433 3338
Q ss_pred CCCCccccccc----CCCc--eeecCcee--ecCCCc---cccCcceEEeecCCCCCCCcchhhcccccceeeeeEEcCC
Q 011235 343 SGTGKTTLSTD----HNRY--LIGDDEHC--WGDNGV---SNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEH 411 (490)
Q Consensus 343 SGtGKTTLs~~----~~~~--lI~DD~~~--wsd~Gv---fn~EgGcYaK~~dLs~e~eP~I~~Ai~f~ailENV~lD~~ 411 (490)
|.||||.|++. |+-+ .++||+.- |+.+|. +|.|.|+|.-..+-+...-|.-.+.+.-++|++||.=..+
T Consensus 304 SacgktnLam~~p~lPGwKV~cVgddiaWmkf~~dG~l~ainPEngffgvapgts~~tnP~am~t~~~ntIftnvaeTsD 383 (640)
T KOG3749|consen 304 SACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDADGRLRAINPENGFFGVAPGTSEKTNPNAMATIQKNTIFTNVAETSD 383 (640)
T ss_pred cccccchHhhcCCCCCCceEEEeccceeEEEecCCCeEEEecccccccccCCCcccccCHHHHHHHHhccceeeeeeccC
Confidence 99999999982 3433 69999853 777895 4999999999999999989977777778999999877665
Q ss_pred CCeeecCC-------------------------CCccccceEEEecccccCCCC--CCCCCCccEEEEEE-eecCCC
Q 011235 412 TREVDYSD-------------------------KSVTENTRAAYPIEYIPNAKI--PCVGPHPKNVILLA-CDAFGV 460 (490)
Q Consensus 412 ~~~vdf~d-------------------------~s~T~NtRa~yPi~~i~N~~~--~~~~g~P~~IIfLt-~Dafgv 460 (490)
+.+.+.. ..-+.|.|.+-|-..-|++.. .+.-|.|+..|++. ++..||
T Consensus 384 -g~~~weg~e~~l~~~v~it~wlgk~w~~~~~~~aahPnsrf~~pa~Qcpii~p~Wesp~GVPI~AiiFggRRp~gv 459 (640)
T KOG3749|consen 384 -GGVYWEGIEKPLAPGVTITSWLGKPWSIGDGEPAAHPNSRFCAPASQCPIIDPAWESPEGVPISAIIFGGRRPAGV 459 (640)
T ss_pred -CceeeccccccccCCceeecccCCcccCCCCCcCCCCcccccCchhhCCCcCccccCCCCCceeEEEecCCCCCCC
Confidence 3454432 144589999999999988742 24458899777666 553444
No 14
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=97.96 E-value=3.8e-06 Score=78.12 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=38.8
Q ss_pred eeeccccccCCCCCEEEEEeCCCCCcccccc---cCCCceeecCceeec
Q 011235 322 LSLHSGCNMGKDGDVALFFGLSGTGKTTLST---DHNRYLIGDDEHCWG 367 (490)
Q Consensus 322 L~~H~sani~~~g~~~lffGlSGtGKTTLs~---~~~~~lI~DD~~~ws 367 (490)
..+||++ +..+|..++|.|+||+|||||+. ..+..+|+||.....
T Consensus 3 ~~~H~~~-v~~~g~gvLi~G~sG~GKStlal~L~~~g~~lvaDD~v~v~ 50 (149)
T cd01918 3 VTVHGVL-VEVGGIGVLITGPSGIGKSELALELIKRGHRLVADDRVVVK 50 (149)
T ss_pred ccEEEEE-EEECCEEEEEEcCCCCCHHHHHHHHHHcCCeEEECCEEEEE
Confidence 5789998 88889999999999999999887 456789999987655
No 15
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.70 E-value=8.9e-06 Score=71.90 Aligned_cols=50 Identities=30% Similarity=0.255 Sum_probs=36.7
Q ss_pred CeeeeccccccCCCCCEEEEEeCCCCCccccccc-CC--CceeecCceeecCC
Q 011235 320 QILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTD-HN--RYLIGDDEHCWGDN 369 (490)
Q Consensus 320 G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~~-~~--~~lI~DD~~~wsd~ 369 (490)
|++.+|+.+-.-..|+.++|.|+||+|||||... +. -.+.+||...++++
T Consensus 1 ~~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~~G~i~~~g~di~~~~~~ 53 (107)
T cd00820 1 GTTSLHGVLVDVYGKVGVLITGDSGIGKTELALELIKRKHRLVGDDNVEIRED 53 (107)
T ss_pred CceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhhCCeEEEeeEeHHHhhhh
Confidence 5788999862236688999999999999997762 22 23667877766643
No 16
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=97.66 E-value=2.3e-05 Score=74.65 Aligned_cols=46 Identities=28% Similarity=0.346 Sum_probs=39.6
Q ss_pred eeeeccccccCCCCCEEEEEeCCCCCcccccc---cCCCceeecCceeec
Q 011235 321 ILSLHSGCNMGKDGDVALFFGLSGTGKTTLST---DHNRYLIGDDEHCWG 367 (490)
Q Consensus 321 ~L~~H~sani~~~g~~~lffGlSGtGKTTLs~---~~~~~lI~DD~~~ws 367 (490)
...+||++ +..+|..++|.|.||+|||||+. ..++.||+||.+.+.
T Consensus 6 ~~~~Hg~~-v~i~G~GVLi~G~SG~GKS~lAl~Li~rGh~lvaDD~v~i~ 54 (171)
T PF07475_consen 6 RTTLHGSL-VDIGGVGVLITGPSGIGKSELALELIKRGHRLVADDRVEIR 54 (171)
T ss_dssp EEEEESEE-EEETTEEEEEEESTTSSHHHHHHHHHHTT-EEEESSEEEEE
T ss_pred cceeeEEE-EEECCEEEEEECCCCCCHHHHHHHHHHCCCeEEeCCEEEEE
Confidence 35799998 88999999999999999999877 468899999987755
No 17
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=97.51 E-value=5.2e-05 Score=77.95 Aligned_cols=73 Identities=23% Similarity=0.231 Sum_probs=52.3
Q ss_pred eEEEEcccchhhhHHHHHHHHHHhcc-cCCeeeeccccccCCCCCEEEEEeCCCCCcccccc---cCCCceeecCceeec
Q 011235 292 EMVILGTQYAGEMKKGLFSVMHYLMP-KRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST---DHNRYLIGDDEHCWG 367 (490)
Q Consensus 292 ~~~I~Gt~Y~GEmKK~iltl~~~~l~-~~G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~---~~~~~lI~DD~~~ws 367 (490)
.+-++-+.+.+- ..+..+..|+-. -.+..++||++ +...|..++|.|.||+|||||+. ..++.||+||.+...
T Consensus 106 ~ip~l~t~~~~~--~~~~~l~~~L~~~la~~~~~hg~~-v~i~g~gvli~G~sg~GKS~lal~Li~rg~~lvaDD~~~~~ 182 (304)
T TIGR00679 106 QVPILKTDLFST--ELSFRLETYLNEQFAPTAAIHGVL-VEVYGVGVLITGKSGVGKSETALELINRGHRLVADDAVEIY 182 (304)
T ss_pred CCcEEEeCCcHH--HHHHHHHHHHHHhhccceeeeeEE-EEECCEEEEEEcCCCCCHHHHHHHHHHcCCceeecCeEEEE
Confidence 344455555551 122223343333 47778999998 88999999999999999999777 568899999987654
No 18
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=97.29 E-value=0.00014 Score=75.10 Aligned_cols=46 Identities=26% Similarity=0.234 Sum_probs=40.2
Q ss_pred eeeeccccccCCCCCEEEEEeCCCCCcccccc---cCCCceeecCceeec
Q 011235 321 ILSLHSGCNMGKDGDVALFFGLSGTGKTTLST---DHNRYLIGDDEHCWG 367 (490)
Q Consensus 321 ~L~~H~sani~~~g~~~lffGlSGtGKTTLs~---~~~~~lI~DD~~~ws 367 (490)
...+||.+ +...|..++|.|.||+|||+|+. ..++.||+||.+.+.
T Consensus 134 ~~~iHg~~-v~V~G~GvLi~G~SG~GKSelALeLi~rGh~LVaDD~v~i~ 182 (308)
T PRK05428 134 RTSVHGVL-VDIYGIGVLITGESGIGKSETALELIKRGHRLVADDAVDIK 182 (308)
T ss_pred cceeeeEE-EEECCEEEEEEcCCCCCHHHHHHHHHHcCCceEecCeEEEE
Confidence 45789998 88999999999999999999877 568899999997655
No 19
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=97.25 E-value=0.00018 Score=73.75 Aligned_cols=74 Identities=23% Similarity=0.284 Sum_probs=50.8
Q ss_pred eEEEEcccchhhhHHHHHHHHHHhcc-cCCeeeeccccccCCCCCEEEEEeCCCCCcccccc---cCCCceeecCceeec
Q 011235 292 EMVILGTQYAGEMKKGLFSVMHYLMP-KRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST---DHNRYLIGDDEHCWG 367 (490)
Q Consensus 292 ~~~I~Gt~Y~GEmKK~iltl~~~~l~-~~G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~---~~~~~lI~DD~~~ws 367 (490)
.+-|+-+.++.. --.+++.+|+.. .--...+||.+ +...|-.+++.|+||+|||+|+- +.+++||+||.+.+.
T Consensus 105 ~~pil~s~~~ts--~l~~~l~~yL~~~lA~~~~vHGvl-~~I~GvGVLItG~SG~GKSElALeLi~rghrLVaDD~V~i~ 181 (308)
T COG1493 105 NIPILTSKLSTS--ELSFTLTNYLSRPLAERVNVHGVL-LDIFGVGVLITGPSGAGKSELALELIKRGHRLVADDAVEIF 181 (308)
T ss_pred CCceEEecchHH--HHHHHHHHHhhhhcccceeeeeEE-EEEeeeEEEEECCCCCCHhHHHHHHHHhccceeccccEEEE
Confidence 344444444432 123444555444 22346789987 77888889999999999998766 578999999998766
Q ss_pred C
Q 011235 368 D 368 (490)
Q Consensus 368 d 368 (490)
-
T Consensus 182 ~ 182 (308)
T COG1493 182 R 182 (308)
T ss_pred e
Confidence 3
No 20
>PRK06217 hypothetical protein; Validated
Probab=95.30 E-value=0.011 Score=55.40 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=26.9
Q ss_pred EEEEEeCCCCCcccccc----cCCCceeecCceeecCCC
Q 011235 336 VALFFGLSGTGKTTLST----DHNRYLIGDDEHCWGDNG 370 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~----~~~~~lI~DD~~~wsd~G 370 (490)
.++|+|.||+|||||+. ..+-..|.-|...|...+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~ 41 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTD 41 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCC
Confidence 48999999999999887 235557877777776544
No 21
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.98 E-value=0.011 Score=50.57 Aligned_cols=17 Identities=41% Similarity=0.694 Sum_probs=15.6
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
++++.|+|||||||++.
T Consensus 1 vI~I~G~~gsGKST~a~ 17 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAK 17 (121)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 47899999999999887
No 22
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.66 E-value=0.019 Score=46.40 Aligned_cols=21 Identities=48% Similarity=0.735 Sum_probs=17.7
Q ss_pred CCCCCEEEEEeCCCCCccccc
Q 011235 331 GKDGDVALFFGLSGTGKTTLS 351 (490)
Q Consensus 331 ~~~g~~~lffGlSGtGKTTLs 351 (490)
...|+..+|.|++|+|||||.
T Consensus 20 ~~~g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 20 DPRGDVTLITGPNGSGKSTLL 40 (62)
T ss_pred cCCCcEEEEECCCCCCHHHHH
Confidence 345779999999999999953
No 23
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.64 E-value=0.016 Score=48.11 Aligned_cols=19 Identities=53% Similarity=0.868 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|+|++||||||++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 4679999999999999776
No 24
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.032 Score=56.15 Aligned_cols=21 Identities=43% Similarity=0.786 Sum_probs=19.4
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|.+.++|||.|||||||+.
T Consensus 28 ~~GEvhaiMGPNGsGKSTLa~ 48 (251)
T COG0396 28 KEGEVHAIMGPNGSGKSTLAY 48 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999998
No 25
>PRK07261 topology modulation protein; Provisional
Probab=94.47 E-value=0.023 Score=53.07 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCccccccc----CCCceeecCceeec
Q 011235 336 VALFFGLSGTGKTTLSTD----HNRYLIGDDEHCWG 367 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~~----~~~~lI~DD~~~ws 367 (490)
.++++|.||+|||||+.. .+-.+|.-|...|.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 478999999999999872 23345554555554
No 26
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.42 E-value=0.018 Score=50.44 Aligned_cols=17 Identities=35% Similarity=0.722 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
++++.|++||||||++.
T Consensus 1 lii~~G~pgsGKSt~a~ 17 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAK 17 (143)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 47999999999999877
No 27
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.27 E-value=0.046 Score=56.66 Aligned_cols=32 Identities=31% Similarity=0.484 Sum_probs=23.0
Q ss_pred CCeeeeccccccCCCC-CEEEEEeCCCCCcccccc
Q 011235 319 RQILSLHSGCNMGKDG-DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 319 ~G~L~~H~sani~~~g-~~~lffGlSGtGKTTLs~ 352 (490)
-|-+.+ -+|....| .+.++||+||+|||||.+
T Consensus 10 lG~~~l--~a~~~~p~~GvTAlFG~SGsGKTslin 42 (352)
T COG4148 10 LGNFAL--DANFTLPARGITALFGPSGSGKTSLIN 42 (352)
T ss_pred cCceEE--EEeccCCCCceEEEecCCCCChhhHHH
Confidence 344444 34555445 689999999999999776
No 28
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.25 E-value=0.023 Score=56.58 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=19.1
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|+.++++|+||||||||.+
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLn 49 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLN 49 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999776
No 29
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=94.18 E-value=0.026 Score=54.04 Aligned_cols=36 Identities=39% Similarity=0.582 Sum_probs=26.0
Q ss_pred cCCCCCEEEEEeCCCCCcccccc----cCCCcee-ecCcee
Q 011235 330 MGKDGDVALFFGLSGTGKTTLST----DHNRYLI-GDDEHC 365 (490)
Q Consensus 330 i~~~g~~~lffGlSGtGKTTLs~----~~~~~lI-~DD~~~ 365 (490)
++.-.++++++|.|||||||... .-+...| +||.|-
T Consensus 8 ~~~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp 48 (191)
T KOG3354|consen 8 MGPFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHP 48 (191)
T ss_pred cCCCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCC
Confidence 34456799999999999999765 2244444 788774
No 30
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.16 E-value=0.021 Score=55.41 Aligned_cols=21 Identities=48% Similarity=0.858 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.+.++-|.||||+|||||+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ 41 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIAN 41 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHH
Confidence 456789999999999999988
No 31
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.014 Score=66.93 Aligned_cols=87 Identities=32% Similarity=0.537 Sum_probs=51.1
Q ss_pred EEEEEeCCCCCcccccccCCCceeecCceeec-C-----------------CCccccC-cce---------E-Ee-ecCC
Q 011235 336 VALFFGLSGTGKTTLSTDHNRYLIGDDEHCWG-D-----------------NGVSNIE-GGC---------Y-AK-CIDL 385 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~~~~~~lI~DD~~~ws-d-----------------~Gvfn~E-gGc---------Y-aK-~~dL 385 (490)
+.+|.||||.|||.|+-.-...|-+|+...+. | -|.-++| ||. | +- .|.+
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEI 602 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEI 602 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechh
Confidence 69999999999999876322222222222111 2 2322443 333 3 22 2323
Q ss_pred CCCCCcchhhcccccceeee-eEEcCCCCeeecCCCC--cccc
Q 011235 386 SREKEPDIWNAIKFGAVLEN-VVFDEHTREVDYSDKS--VTEN 425 (490)
Q Consensus 386 s~e~eP~I~~Ai~f~ailEN-V~lD~~~~~vdf~d~s--~T~N 425 (490)
+...|+|+|- |-.|+++ ..-|..|+.|||.|.. .|.|
T Consensus 603 -EKAHpdV~ni--lLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 603 -EKAHPDVFNL--LLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred -hhcCHHHHHH--HHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 4578999987 4345444 6778889999998773 3455
No 32
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.05 E-value=0.025 Score=59.27 Aligned_cols=21 Identities=43% Similarity=0.782 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
.+|.-++|.|+||||||||..
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr 47 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLR 47 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999665
No 33
>PRK08118 topology modulation protein; Reviewed
Probab=94.04 E-value=0.025 Score=52.87 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCccccccc----CCCceeecCceeec
Q 011235 336 VALFFGLSGTGKTTLSTD----HNRYLIGDDEHCWG 367 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~~----~~~~lI~DD~~~ws 367 (490)
.++++|++|+|||||+.. .+-.++.=|...|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 589999999999998872 24445654555554
No 34
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.03 E-value=0.012 Score=59.24 Aligned_cols=136 Identities=27% Similarity=0.316 Sum_probs=81.0
Q ss_pred CEEEEEeCCCCCccccccc-------CCCceee---cCceeecC--CCccccCcceEEeecCCCCCCCcchhhcccccce
Q 011235 335 DVALFFGLSGTGKTTLSTD-------HNRYLIG---DDEHCWGD--NGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAV 402 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~~-------~~~~lI~---DD~~~wsd--~Gvfn~EgGcYaK~~dLs~e~eP~I~~Ai~f~ai 402 (490)
..++++|..|||||+|... .+=+||- +|+..+.+ +-+-+..-=+-.=||||+=+..-.-|++++ ++
T Consensus 53 nnvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LK--s~ 130 (249)
T PF05673_consen 53 NNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALK--SV 130 (249)
T ss_pred cceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHH--HH
Confidence 4689999999999997651 1223432 22222110 001122333556689999665555677754 66
Q ss_pred eeeeEEcCCCCeeecCCCCccccceEEEecccccCCCCCCCCCCccEEEE--EE-eecCCCCCCccccCHHHHHHHHHh
Q 011235 403 LENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVIL--LA-CDAFGVLPPVSKLNLAQTMYHFIS 478 (490)
Q Consensus 403 lENV~lD~~~~~vdf~d~s~T~NtRa~yPi~~i~N~~~~~~~g~P~~IIf--Lt-~DafgvLPPVskLt~eQA~y~Fls 478 (490)
||.-....-...+.| -|.|-|-.+|-.+.+|.....-.-||.+.+= ++ .|+||.. |....+.|..|.=+-
T Consensus 131 LeGgle~~P~Nvliy----ATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~--l~F~~~~q~~YL~IV 203 (249)
T PF05673_consen 131 LEGGLEARPDNVLIY----ATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLW--LSFYPPDQEEYLAIV 203 (249)
T ss_pred hcCccccCCCcEEEE----EecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcE--EEecCCCHHHHHHHH
Confidence 666332221223333 3579999999999888642222345665554 33 7999997 777778888776443
No 35
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.00 E-value=0.028 Score=56.19 Aligned_cols=21 Identities=43% Similarity=0.768 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|.++++.|+||+|||||..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLR 46 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLR 46 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 36
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.96 E-value=0.048 Score=52.71 Aligned_cols=47 Identities=21% Similarity=0.317 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHhcccCCeeeeccccccC-CCCCEEEEEeCCCCCcccccc
Q 011235 303 EMKKGLFSVMHYLMPKRQILSLHSGCNMG-KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 303 EmKK~iltl~~~~l~~~G~L~~H~sani~-~~g~~~lffGlSGtGKTTLs~ 352 (490)
+||+ +.+.+.-....+...+|.- ++. ..|..+++.|++|+|||||..
T Consensus 19 ~~~~--l~~~~~~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~ 66 (224)
T cd03220 19 SLKK--LGILGRKGEVGEFWALKDV-SFEVPRGERIGLIGRNGAGKSTLLR 66 (224)
T ss_pred hhhh--hhhhhhhhhcCCeEEEeee-EEEEcCCCEEEEECCCCCCHHHHHH
Confidence 4677 5555554444444445432 233 578999999999999999766
No 37
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.77 E-value=0.026 Score=51.25 Aligned_cols=27 Identities=26% Similarity=0.594 Sum_probs=19.0
Q ss_pred EEEEeCCCCCccccccc----CCCceeecCc
Q 011235 337 ALFFGLSGTGKTTLSTD----HNRYLIGDDE 363 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~~----~~~~lI~DD~ 363 (490)
+++.|++||||||++.. .+..+|..|.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~ 31 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDD 31 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCcc
Confidence 47899999999998872 2344555443
No 38
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.69 E-value=0.015 Score=65.91 Aligned_cols=66 Identities=29% Similarity=0.514 Sum_probs=43.9
Q ss_pred CCEEEEEeCCCCCcccccc------cC-CCceeecCceeecCCCccccCcceEEeecCCCCCCCcchhhcccccceeeee
Q 011235 334 GDVALFFGLSGTGKTTLST------DH-NRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENV 406 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~------~~-~~~lI~DD~~~wsd~Gvfn~EgGcYaK~~dLs~e~eP~I~~Ai~f~ailENV 406 (490)
|.++++.||||.||||++. +| .++++-|..-+ -+++.=.|-+-+++= .+||.+|. ++|.||+
T Consensus 494 Ge~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i------~~~~~~~lr~~Ig~V-~QEPvLFs----~sI~eNI 562 (716)
T KOG0058|consen 494 GEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPI------SDINHKYLRRKIGLV-GQEPVLFS----GSIRENI 562 (716)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeeh------hhcCHHHHHHHeeee-eccceeec----ccHHHHH
Confidence 7899999999999999877 55 45555553322 234444455555553 46887774 4788887
Q ss_pred EEcC
Q 011235 407 VFDE 410 (490)
Q Consensus 407 ~lD~ 410 (490)
.+--
T Consensus 563 ~YG~ 566 (716)
T KOG0058|consen 563 AYGL 566 (716)
T ss_pred hcCC
Confidence 7744
No 39
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.68 E-value=0.032 Score=53.51 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+-+||+||||||||..
T Consensus 26 a~GeivtlMGPSGcGKSTLls 46 (213)
T COG4136 26 AKGEIVTLMGPSGCGKSTLLS 46 (213)
T ss_pred cCCcEEEEECCCCccHHHHHH
Confidence 568999999999999999655
No 40
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.59 E-value=0.021 Score=58.45 Aligned_cols=56 Identities=25% Similarity=0.299 Sum_probs=35.7
Q ss_pred CCCCEEEEEeCCCCCcccccc------cC-CCceeecCceeecCCCcc-ccCcceEEeecCCCC
Q 011235 332 KDGDVALFFGLSGTGKTTLST------DH-NRYLIGDDEHCWGDNGVS-NIEGGCYAKCIDLSR 387 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~------~~-~~~lI~DD~~~wsd~Gvf-n~EgGcYaK~~dLs~ 387 (490)
.+|.-++|.|+|||||||+.. .| .+.+.-|++-+-+.+.+. .--.|+-+.-++|=|
T Consensus 25 ~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFP 88 (309)
T COG1125 25 EEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFP 88 (309)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCC
Confidence 568889999999999999655 22 334444555554445543 445666666666543
No 41
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.53 E-value=0.033 Score=52.52 Aligned_cols=20 Identities=30% Similarity=0.760 Sum_probs=17.7
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++++|+||||||||+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~ 21 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGS 21 (176)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 36789999999999999776
No 42
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.46 E-value=0.035 Score=51.03 Aligned_cols=19 Identities=42% Similarity=0.590 Sum_probs=16.9
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..++|.|+||+|||||+.
T Consensus 1 g~ii~l~G~~GsGKsTl~~ 19 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVK 19 (180)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5679999999999999776
No 43
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.45 E-value=0.031 Score=58.62 Aligned_cols=21 Identities=43% Similarity=0.887 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
.+|...++|||||+|||||..
T Consensus 52 ~~GeIfViMGLSGSGKSTLvR 72 (386)
T COG4175 52 EEGEIFVIMGLSGSGKSTLVR 72 (386)
T ss_pred cCCeEEEEEecCCCCHHHHHH
Confidence 568899999999999999876
No 44
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.44 E-value=0.039 Score=55.66 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|.-+.+.|+||||||||..
T Consensus 27 ~~GEfvsilGpSGcGKSTLLr 47 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLR 47 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 45
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.43 E-value=0.038 Score=55.31 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=18.3
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..+.+++|.||||||||||..
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR 51 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLR 51 (253)
T ss_pred cCCceEEEECCCCcCHHHHHH
Confidence 557899999999999999665
No 46
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.42 E-value=0.039 Score=51.88 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..++|.|+||+|||||+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~ 23 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVK 23 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 357889999999999999876
No 47
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.31 E-value=0.037 Score=50.99 Aligned_cols=19 Identities=42% Similarity=0.621 Sum_probs=16.6
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..+++.|+||+|||||+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~ 19 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLD 19 (179)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4578999999999999875
No 48
>PRK08233 hypothetical protein; Provisional
Probab=93.19 E-value=0.042 Score=50.13 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=16.7
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|.|.||+|||||+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~ 21 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTE 21 (182)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3578999999999999887
No 49
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.15 E-value=0.037 Score=52.74 Aligned_cols=21 Identities=38% Similarity=0.420 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+.|.|+||+|||||+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~ 24 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVAR 24 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHH
Confidence 457789999999999999887
No 50
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.14 E-value=0.036 Score=52.17 Aligned_cols=19 Identities=58% Similarity=0.779 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|-++.|.|+||+|||||+.
T Consensus 2 g~vIwltGlsGsGKtTlA~ 20 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLAR 20 (156)
T ss_dssp -EEEEEESSTTSSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4579999999999999988
No 51
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.13 E-value=0.042 Score=50.94 Aligned_cols=19 Identities=26% Similarity=0.566 Sum_probs=17.4
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..+++.|+||+||||++.
T Consensus 2 ~~~i~l~G~~gsGKst~a~ 20 (175)
T cd00227 2 GRIIILNGGSSAGKSSIAR 20 (175)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5689999999999999887
No 52
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=92.99 E-value=0.06 Score=52.98 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=23.6
Q ss_pred CeeeeccccccCCCCCEEEEEeCCCCCcccccc
Q 011235 320 QILSLHSGCNMGKDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 320 G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~ 352 (490)
+-++|+=.+ -...|+.+++.|+||+|||||.+
T Consensus 12 ~~~~~~fdl-~v~~ge~vAi~GpSGaGKSTLLn 43 (231)
T COG3840 12 GHLPMRFDL-TVPAGEIVAILGPSGAGKSTLLN 43 (231)
T ss_pred CcceEEEEE-eecCCcEEEEECCCCccHHHHHH
Confidence 445554443 22568899999999999999766
No 53
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.98 E-value=0.044 Score=46.62 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=14.8
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
+++.|.+|+||||++.
T Consensus 1 I~i~G~~GsGKtTia~ 16 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK 16 (129)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred CEEECCCCCCHHHHHH
Confidence 6899999999999887
No 54
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.91 E-value=0.038 Score=53.93 Aligned_cols=41 Identities=32% Similarity=0.511 Sum_probs=32.9
Q ss_pred CCCCEEEEEeCCCCCcccccc------cC-CC--ceeecCceeecCCCcc
Q 011235 332 KDGDVALFFGLSGTGKTTLST------DH-NR--YLIGDDEHCWGDNGVS 372 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~------~~-~~--~lI~DD~~~wsd~Gvf 372 (490)
+.|.++.+.|+||+|||||.+ ++ ++ +|.+.+.+-.++++.-
T Consensus 34 ~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA 83 (228)
T COG4181 34 KRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83 (228)
T ss_pred cCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHH
Confidence 568999999999999999776 22 12 4778899999988864
No 55
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=92.79 E-value=0.018 Score=62.93 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|.||+|||||..
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~ 394 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLN 394 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999876
No 56
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.75 E-value=0.054 Score=50.80 Aligned_cols=19 Identities=37% Similarity=0.691 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..++|.|+||+|||||..
T Consensus 2 g~~i~l~G~sGsGKsTl~~ 20 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLA 20 (186)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4678999999999999766
No 57
>PRK05541 adenylylsulfate kinase; Provisional
Probab=92.74 E-value=0.056 Score=49.88 Aligned_cols=21 Identities=43% Similarity=0.710 Sum_probs=18.4
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|+||+||||++.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~ 25 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAK 25 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 456789999999999999876
No 58
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.70 E-value=0.061 Score=51.05 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|+||+|||||..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~ 39 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVN 39 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 59
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.59 E-value=0.059 Score=48.50 Aligned_cols=19 Identities=32% Similarity=0.683 Sum_probs=17.0
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|+|++||||||++.
T Consensus 4 ~~~i~l~G~~GsGKstla~ 22 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGR 22 (175)
T ss_pred CCeEEEEcCCCCCHHHHHH
Confidence 5679999999999999876
No 60
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.40 E-value=0.062 Score=49.56 Aligned_cols=21 Identities=48% Similarity=0.756 Sum_probs=18.3
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..++|.|++|+||||++.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~ 22 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIAR 22 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 356789999999999999876
No 61
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.36 E-value=0.065 Score=50.93 Aligned_cols=21 Identities=38% Similarity=0.423 Sum_probs=18.3
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..+..+.+.|.||||||||+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~ 24 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVAS 24 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 345689999999999999887
No 62
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.35 E-value=0.076 Score=46.40 Aligned_cols=21 Identities=38% Similarity=0.699 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|.+|+|||||..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~ 29 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLK 29 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEEccCCCcccccee
Confidence 468899999999999999765
No 63
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=92.26 E-value=0.025 Score=63.29 Aligned_cols=21 Identities=38% Similarity=0.635 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|.||+|||||..
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlk 497 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLR 497 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999776
No 64
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.26 E-value=0.072 Score=50.38 Aligned_cols=21 Identities=43% Similarity=0.748 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+||+|||||..
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~ 45 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLR 45 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 65
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.26 E-value=0.069 Score=56.37 Aligned_cols=21 Identities=48% Similarity=0.714 Sum_probs=18.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|.-+.|.|+||||||||..
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR 49 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLR 49 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 567889999999999999665
No 66
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.19 E-value=0.079 Score=50.20 Aligned_cols=19 Identities=37% Similarity=0.760 Sum_probs=17.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+++++|+|.||+|||||.+
T Consensus 35 ~k~~vl~G~SGvGKSSLiN 53 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLIN 53 (161)
T ss_dssp TSEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5899999999999999877
No 67
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.19 E-value=0.06 Score=45.97 Aligned_cols=16 Identities=56% Similarity=0.804 Sum_probs=14.5
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
+++.|++|||||||+.
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5899999999999876
No 68
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.18 E-value=0.073 Score=44.79 Aligned_cols=20 Identities=45% Similarity=0.657 Sum_probs=17.6
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..+++.|++|+|||||+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999999876
No 69
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.17 E-value=0.076 Score=51.66 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=18.3
Q ss_pred CCCCEEEEEeCCCCCccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLS 351 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs 351 (490)
..|..+.+.|+||||||||.
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHH
Confidence 56889999999999999985
No 70
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.16 E-value=0.059 Score=51.36 Aligned_cols=17 Identities=41% Similarity=0.688 Sum_probs=15.7
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|+||+||||++.
T Consensus 2 riiilG~pGaGK~T~A~ 18 (178)
T COG0563 2 RILILGPPGAGKSTLAK 18 (178)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47999999999999987
No 71
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.08 E-value=0.08 Score=50.34 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~ 48 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLN 48 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHH
Confidence 568899999999999999766
No 72
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=92.07 E-value=0.099 Score=54.67 Aligned_cols=21 Identities=43% Similarity=0.744 Sum_probs=19.1
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
++|..++++|+||+|||||..
T Consensus 26 ~~Ge~vaLlGpSGaGKsTlLR 46 (345)
T COG1118 26 KSGELVALLGPSGAGKSTLLR 46 (345)
T ss_pred cCCcEEEEECCCCCcHHHHHH
Confidence 689999999999999999765
No 73
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.05 E-value=0.082 Score=49.41 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~ 36 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLL 36 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 74
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.02 E-value=0.082 Score=50.13 Aligned_cols=21 Identities=43% Similarity=0.694 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~ 46 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLK 46 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 75
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=91.98 E-value=0.084 Score=50.23 Aligned_cols=21 Identities=33% Similarity=0.692 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~ 47 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLK 47 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 76
>PRK06762 hypothetical protein; Provisional
Probab=91.90 E-value=0.071 Score=48.57 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=15.9
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|++||||||++.
T Consensus 3 ~li~i~G~~GsGKST~A~ 20 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAK 20 (166)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358899999999999887
No 77
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.90 E-value=0.085 Score=49.96 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|++|+|||||..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~ 44 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIR 44 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 78
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.85 E-value=0.088 Score=50.31 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~ 44 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIK 44 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 79
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.83 E-value=0.088 Score=50.89 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~ 46 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLR 46 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 80
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.83 E-value=0.078 Score=51.67 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=18.1
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
.-|+.+++.|+||||||||..
T Consensus 27 ~~Ge~iaitGPSG~GKStllk 47 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLK 47 (223)
T ss_pred cCCceEEEeCCCCccHHHHHH
Confidence 457899999999999999754
No 81
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.80 E-value=0.082 Score=53.56 Aligned_cols=48 Identities=25% Similarity=0.246 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHhcccCCeeeeccccccCCCCCEEEEEeCCCCCcccccc
Q 011235 303 EMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 303 EmKK~iltl~~~~l~~~G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|+.+..+..++..++-..- + +......+..++|+|++||||||++.
T Consensus 29 ~vk~~i~e~~~~~~~~~~r~~-~-g~~~~~~~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 29 PVKTRIREIAALLLVERLRQR-L-GLASAAPTLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-h-CCCcCCCCceEEEEcCCCCCHHHHHH
Confidence 678887777666433211110 0 11122235579999999999999884
No 82
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.80 E-value=0.089 Score=49.74 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~ 44 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAK 44 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 83
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=91.80 E-value=0.091 Score=49.69 Aligned_cols=21 Identities=48% Similarity=0.800 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.++++|++|+|||||..
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~ 44 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLR 44 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 84
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=91.80 E-value=0.09 Score=50.41 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|+||+|||||..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~ 44 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLR 44 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 85
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.76 E-value=0.091 Score=52.29 Aligned_cols=21 Identities=43% Similarity=0.714 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|+||||||||.+
T Consensus 29 a~ge~vv~lGpSGcGKTTLLn 49 (259)
T COG4525 29 ASGELVVVLGPSGCGKTTLLN 49 (259)
T ss_pred cCCCEEEEEcCCCccHHHHHH
Confidence 568899999999999999766
No 86
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.75 E-value=0.091 Score=49.71 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~ 45 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLK 45 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 87
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.69 E-value=0.093 Score=50.66 Aligned_cols=21 Identities=38% Similarity=0.707 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~ 44 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLR 44 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 88
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=91.67 E-value=0.091 Score=50.56 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~ 44 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFN 44 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 89
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=91.66 E-value=0.094 Score=50.02 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~ 49 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLAR 49 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999766
No 90
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.63 E-value=0.096 Score=49.73 Aligned_cols=21 Identities=43% Similarity=0.645 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~ 44 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLR 44 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 91
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.62 E-value=0.084 Score=53.34 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|.+..++|.||||||||+.
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r 51 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLAR 51 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHH
Confidence 458899999999999999876
No 92
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=91.57 E-value=0.07 Score=42.74 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=14.7
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
+++.|.+|+||||++.
T Consensus 2 i~i~G~~gsGKst~~~ 17 (69)
T cd02019 2 IAITGGSGSGKSTVAK 17 (69)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999999887
No 93
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=91.55 E-value=0.082 Score=56.43 Aligned_cols=21 Identities=38% Similarity=0.868 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 52 ~~Gei~~LvG~NGsGKSTLLr 72 (400)
T PRK10070 52 EEGEIFVIMGLSGSGKSTMVR 72 (400)
T ss_pred cCCCEEEEECCCCchHHHHHH
Confidence 568999999999999999766
No 94
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=91.55 E-value=0.099 Score=49.64 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+||+|||||..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~ 43 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLK 43 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999766
No 95
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=91.52 E-value=0.028 Score=63.54 Aligned_cols=21 Identities=38% Similarity=0.722 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|+||+|||||..
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~ 525 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAA 525 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 96
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=91.48 E-value=0.032 Score=62.59 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|+.+++.|.||+|||||..
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlk 523 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAK 523 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 97
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=91.47 E-value=0.1 Score=49.71 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|+||+|||||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~ 46 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLK 46 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 98
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=91.46 E-value=0.034 Score=62.37 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|+.+++.|.||+|||||..
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlk 509 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLK 509 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 99
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.42 E-value=0.098 Score=49.79 Aligned_cols=21 Identities=38% Similarity=0.741 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~ 44 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLK 44 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 100
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.39 E-value=0.11 Score=50.14 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~ 49 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIR 49 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 101
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=91.32 E-value=0.11 Score=49.21 Aligned_cols=21 Identities=43% Similarity=0.684 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.++++|++|+|||||..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~ 44 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMK 44 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 102
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=91.29 E-value=0.03 Score=61.00 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|+.+++.|.||+|||||..
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlk 384 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQ 384 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 103
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.28 E-value=0.1 Score=49.86 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~ 48 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLR 48 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 104
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=91.28 E-value=0.11 Score=49.53 Aligned_cols=21 Identities=38% Similarity=0.667 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~ 49 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLH 49 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 105
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.27 E-value=0.11 Score=49.39 Aligned_cols=21 Identities=43% Similarity=0.619 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|++|||||||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~ 49 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLR 49 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 106
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=91.25 E-value=0.11 Score=48.96 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|++|+|||||..
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~ 42 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLN 42 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 107
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=91.24 E-value=0.044 Score=62.52 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|.||||||||+.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~K 517 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLK 517 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 457889999999999999877
No 108
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.21 E-value=0.11 Score=49.83 Aligned_cols=21 Identities=43% Similarity=0.675 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|||||||..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~ 44 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLK 44 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 109
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.20 E-value=0.11 Score=49.99 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~ 45 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLR 45 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 110
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=91.18 E-value=0.1 Score=49.33 Aligned_cols=17 Identities=47% Similarity=0.612 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
++.+.|+||+|||||+.
T Consensus 1 IIgI~G~sgSGKTTla~ 17 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAK 17 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 47899999999999987
No 111
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=91.15 E-value=0.11 Score=51.59 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHhcc-----cCCeeeeccccccCCCCCEEEEEeCCCCCcccccc
Q 011235 303 EMKKGLFSVMHYLMP-----KRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 303 EmKK~iltl~~~~l~-----~~G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|+.+..+.++... ++|.- .......++|+|++||||||++.
T Consensus 13 ~vk~~i~~~~~~~~~~~~~~~~g~~-------~~~~~~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 13 EVKALIKEIYAWIQINEKRKEEGLK-------TSKQVLHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-------CCCCcceEEEEcCCCCCHHHHHH
Confidence 577777766655422 22222 22334579999999999999875
No 112
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=91.12 E-value=0.11 Score=50.27 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|+||+|||||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~ 46 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLR 46 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 113
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=0.064 Score=59.56 Aligned_cols=21 Identities=43% Similarity=0.710 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|+.+++.|.||||||||..
T Consensus 345 ~~g~~talvG~SGaGKSTLl~ 365 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLN 365 (559)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 114
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=91.12 E-value=0.12 Score=49.96 Aligned_cols=21 Identities=43% Similarity=0.795 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~ 44 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSK 44 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 115
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.08 E-value=0.12 Score=47.72 Aligned_cols=21 Identities=38% Similarity=0.722 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~ 44 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMK 44 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999999766
No 116
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.03 E-value=0.1 Score=49.43 Aligned_cols=21 Identities=48% Similarity=0.756 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..+..++|.|+||+|||||+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~ 42 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAG 42 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 557789999999999999877
No 117
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=91.01 E-value=0.12 Score=48.93 Aligned_cols=21 Identities=43% Similarity=0.689 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~ 44 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLR 44 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 118
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=91.00 E-value=0.099 Score=52.39 Aligned_cols=18 Identities=56% Similarity=0.885 Sum_probs=16.0
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
+.++|+|+.|+|||||+.
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 468999999999999987
No 119
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=90.96 E-value=0.12 Score=49.62 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~ 44 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFY 44 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 120
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=90.95 E-value=0.13 Score=48.00 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~ 43 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLK 43 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999755
No 121
>PRK10908 cell division protein FtsE; Provisional
Probab=90.92 E-value=0.12 Score=49.35 Aligned_cols=21 Identities=43% Similarity=0.746 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|+||+|||||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~ 46 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLK 46 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999999765
No 122
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.88 E-value=0.13 Score=47.70 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.++++|+||+|||||..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~ 44 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIK 44 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 123
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=90.87 E-value=0.11 Score=47.52 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=16.1
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|++|+||||++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~ 21 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCE 21 (188)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468999999999999876
No 124
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=90.82 E-value=0.13 Score=49.57 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk 31 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTR 31 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 125
>PRK14738 gmk guanylate kinase; Provisional
Probab=90.79 E-value=0.12 Score=49.75 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=17.2
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|+||+|||||..
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~ 31 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLA 31 (206)
T ss_pred CCeEEEEECcCCCCHHHHHH
Confidence 45679999999999999765
No 126
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=90.78 E-value=0.11 Score=50.53 Aligned_cols=20 Identities=40% Similarity=0.586 Sum_probs=17.3
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++++|+||+|||||..
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k 22 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVK 22 (191)
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 46779999999999999754
No 127
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.77 E-value=0.13 Score=47.75 Aligned_cols=21 Identities=38% Similarity=0.735 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|++|+|||||..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~ 44 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLR 44 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 128
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.77 E-value=0.12 Score=49.07 Aligned_cols=18 Identities=44% Similarity=0.652 Sum_probs=16.5
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
| .+++.|+||+|||||..
T Consensus 26 g-~~~i~G~nGsGKSTLl~ 43 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMR 43 (211)
T ss_pred C-cEEEECCCCCCHHHHHH
Confidence 7 99999999999999765
No 129
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=90.77 E-value=0.1 Score=46.67 Aligned_cols=16 Identities=38% Similarity=0.781 Sum_probs=14.7
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|.|++|+||||++.
T Consensus 2 i~l~G~~GsGKST~a~ 17 (150)
T cd02021 2 IVVMGVSGSGKSTVGK 17 (150)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 6899999999999877
No 130
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.76 E-value=0.12 Score=49.00 Aligned_cols=21 Identities=48% Similarity=0.659 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~ 43 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVK 43 (177)
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 568899999999999999766
No 131
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.75 E-value=0.13 Score=48.54 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~ 45 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLK 45 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999999765
No 132
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=90.72 E-value=0.13 Score=49.67 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~ 53 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLH 53 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999776
No 133
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=90.67 E-value=0.14 Score=47.41 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|++|+|||||..
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~ 46 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLAR 46 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 134
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=90.66 E-value=0.13 Score=47.16 Aligned_cols=21 Identities=48% Similarity=0.545 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|+++++.|+.|||||||+.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~ 40 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQ 40 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 567899999999999999877
No 135
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.63 E-value=0.14 Score=48.81 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~ 46 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLR 46 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 136
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=90.59 E-value=0.14 Score=49.15 Aligned_cols=21 Identities=43% Similarity=0.692 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~ 54 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLA 54 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999766
No 137
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.58 E-value=0.14 Score=49.75 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|+||+|||||..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~ 45 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMK 45 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 138
>PRK14527 adenylate kinase; Provisional
Probab=90.54 E-value=0.13 Score=48.30 Aligned_cols=20 Identities=35% Similarity=0.654 Sum_probs=17.7
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|+|++|+||||++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~ 24 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAE 24 (191)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46789999999999999876
No 139
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=90.54 E-value=0.14 Score=49.64 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|++|+|||||..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~ 47 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFY 47 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568999999999999999766
No 140
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.52 E-value=0.14 Score=48.51 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~ 45 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLR 45 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 141
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.51 E-value=0.14 Score=49.62 Aligned_cols=21 Identities=43% Similarity=0.714 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~ 46 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLR 46 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 142
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=90.50 E-value=0.13 Score=50.10 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|+||+|||||..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~ 47 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLG 47 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 143
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.47 E-value=0.14 Score=49.94 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~ 48 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLR 48 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 144
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=90.47 E-value=0.14 Score=49.48 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~ 45 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFS 45 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 145
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.46 E-value=0.15 Score=48.94 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~ 47 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLIN 47 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 146
>PF13479 AAA_24: AAA domain
Probab=90.44 E-value=0.16 Score=49.06 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=20.9
Q ss_pred CCEEEEEeCCCCCcccccccCCCceeec
Q 011235 334 GDVALFFGLSGTGKTTLSTDHNRYLIGD 361 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~~~~~~lI~D 361 (490)
+-.++++|.||+||||++..-.+.|+-|
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~~k~l~id 30 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASLPKPLFID 30 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhCCCeEEEE
Confidence 4468999999999999887544544433
No 147
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=90.43 E-value=0.14 Score=50.53 Aligned_cols=21 Identities=43% Similarity=0.719 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~ 45 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLN 45 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 148
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=90.43 E-value=0.1 Score=48.12 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
+++++|++|+||||++.
T Consensus 1 ~i~i~G~pGsGKst~a~ 17 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCA 17 (183)
T ss_pred CEEEECCCCCCHHHHHH
Confidence 37899999999999876
No 149
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=90.42 E-value=0.085 Score=50.50 Aligned_cols=22 Identities=45% Similarity=0.684 Sum_probs=19.7
Q ss_pred CCCCEEEEEeCCCCCccccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLSTD 353 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~~ 353 (490)
+.|-++-+.||||+|||||++.
T Consensus 29 qkGcviWiTGLSgSGKStlACa 50 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACA 50 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHH
Confidence 5678999999999999999883
No 150
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=90.42 E-value=0.15 Score=47.11 Aligned_cols=21 Identities=52% Similarity=0.680 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|++|+|||||..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~ 45 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFR 45 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 151
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.33 E-value=0.15 Score=49.69 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLR 47 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 152
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.29 E-value=0.11 Score=48.73 Aligned_cols=16 Identities=44% Similarity=0.493 Sum_probs=14.7
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
+.+.|+||||||||+.
T Consensus 2 igi~G~~GsGKSTl~~ 17 (198)
T cd02023 2 IGIAGGSGSGKTTVAE 17 (198)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999999887
No 153
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=90.28 E-value=0.15 Score=48.46 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~ 48 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLK 48 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 154
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.27 E-value=0.15 Score=47.52 Aligned_cols=21 Identities=33% Similarity=0.658 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~ 44 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAE 44 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 155
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=90.26 E-value=0.15 Score=53.41 Aligned_cols=21 Identities=48% Similarity=0.711 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|+||||||||..
T Consensus 28 ~~Ge~~~l~GpsGsGKSTLLr 48 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLR 48 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999665
No 156
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=90.24 E-value=0.13 Score=44.20 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=13.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+++..+++.|++|+|||++..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp -----EEEEE-TTSSHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHH
Confidence 345679999999999999766
No 157
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=90.24 E-value=0.15 Score=50.22 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~ 57 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLR 57 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 158
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=90.22 E-value=0.15 Score=49.79 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~ 50 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLR 50 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 159
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.22 E-value=0.16 Score=48.19 Aligned_cols=21 Identities=38% Similarity=0.702 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~ 42 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLN 42 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 160
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=90.21 E-value=0.16 Score=49.57 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~ 45 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLR 45 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 161
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=90.21 E-value=0.16 Score=47.93 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~ 44 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLR 44 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 162
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=90.14 E-value=0.17 Score=45.91 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~ 44 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLK 44 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 163
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=90.13 E-value=0.16 Score=47.05 Aligned_cols=21 Identities=43% Similarity=0.700 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~ 46 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQ 46 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 164
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=90.10 E-value=0.16 Score=49.41 Aligned_cols=21 Identities=52% Similarity=0.749 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~ 47 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLR 47 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 165
>PRK06547 hypothetical protein; Provisional
Probab=90.10 E-value=0.13 Score=48.56 Aligned_cols=17 Identities=53% Similarity=0.669 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.+++.|+||||||||+.
T Consensus 17 ~i~i~G~~GsGKTt~a~ 33 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAG 33 (172)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58888999999999877
No 166
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=90.07 E-value=0.11 Score=47.36 Aligned_cols=17 Identities=47% Similarity=0.786 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
+++|.|++|+|||||+.
T Consensus 1 ~i~i~G~~GsGKSTla~ 17 (149)
T cd02027 1 VIWLTGLSGSGKSTIAR 17 (149)
T ss_pred CEEEEcCCCCCHHHHHH
Confidence 37899999999999887
No 167
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=90.06 E-value=0.16 Score=49.98 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~ 48 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLR 48 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 168
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.06 E-value=0.16 Score=49.52 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~ 49 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLR 49 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 169
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=90.02 E-value=0.16 Score=50.53 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk 56 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLR 56 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 170
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.01 E-value=0.16 Score=49.63 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~ 51 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLR 51 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 171
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=90.00 E-value=0.16 Score=48.91 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=18.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~ 24 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLR 24 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 358899999999999999766
No 172
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=89.98 E-value=0.14 Score=45.11 Aligned_cols=16 Identities=56% Similarity=0.827 Sum_probs=14.7
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
+++.|++|||||+|+.
T Consensus 2 vlL~G~~G~GKt~l~~ 17 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLAR 17 (139)
T ss_dssp EEEEESSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999999876
No 173
>PRK03839 putative kinase; Provisional
Probab=89.97 E-value=0.13 Score=47.73 Aligned_cols=17 Identities=41% Similarity=0.610 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+||||++.
T Consensus 2 ~I~l~G~pGsGKsT~~~ 18 (180)
T PRK03839 2 IIAITGTPGVGKTTVSK 18 (180)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999876
No 174
>PRK09183 transposase/IS protein; Provisional
Probab=89.95 E-value=0.14 Score=51.20 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=17.8
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|+|++|||||+|+.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 46789999999999999877
No 175
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=89.93 E-value=0.17 Score=49.09 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~ 29 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLN 29 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 176
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=89.91 E-value=0.17 Score=48.78 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~ 51 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLK 51 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 177
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=89.90 E-value=0.13 Score=45.57 Aligned_cols=16 Identities=38% Similarity=0.750 Sum_probs=14.8
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++++|++||||||++.
T Consensus 2 i~l~G~~GsGKstla~ 17 (154)
T cd00464 2 IVLIGMMGAGKTTVGR 17 (154)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 7899999999999887
No 178
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=89.88 E-value=0.17 Score=47.94 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.++|++|+|||||..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~ 44 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLR 44 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 179
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=89.87 E-value=0.17 Score=49.43 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~ 44 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILR 44 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 180
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=89.85 E-value=0.12 Score=45.04 Aligned_cols=16 Identities=56% Similarity=0.891 Sum_probs=14.5
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++++|.+|+||||++.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 6899999999999776
No 181
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.84 E-value=0.18 Score=48.31 Aligned_cols=21 Identities=43% Similarity=0.590 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|++|+|||||..
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~ 55 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLR 55 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 468899999999999999765
No 182
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=89.84 E-value=0.18 Score=48.29 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~ 52 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLK 52 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999766
No 183
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.82 E-value=0.17 Score=50.14 Aligned_cols=21 Identities=29% Similarity=0.571 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|+||+|||||..
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~ 53 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAK 53 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999766
No 184
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=89.82 E-value=0.17 Score=49.24 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~ 49 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLR 49 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 185
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=89.82 E-value=0.17 Score=48.94 Aligned_cols=21 Identities=43% Similarity=0.764 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~ 45 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLR 45 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 186
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=89.80 E-value=0.18 Score=48.74 Aligned_cols=21 Identities=38% Similarity=0.635 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~ 43 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLN 43 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 187
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=89.80 E-value=0.18 Score=48.77 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~ 30 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCL 30 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 188
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=89.77 E-value=0.18 Score=47.58 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~ 49 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLS 49 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 578899999999999999765
No 189
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=89.77 E-value=0.17 Score=48.90 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~ 46 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMD 46 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999755
No 190
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=89.76 E-value=0.18 Score=48.33 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~ 44 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLK 44 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 191
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=89.73 E-value=0.18 Score=49.94 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~ 55 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLK 55 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 192
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=89.71 E-value=0.18 Score=48.64 Aligned_cols=21 Identities=48% Similarity=0.732 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~ 46 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTK 46 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 193
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=89.70 E-value=0.17 Score=55.63 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|+||+|||||..
T Consensus 30 ~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 30 PSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred cCCCEEEEECCCCCCHHHHHh
Confidence 468899999999999999766
No 194
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.69 E-value=0.18 Score=49.11 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~ 47 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIK 47 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 195
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=89.68 E-value=0.18 Score=49.12 Aligned_cols=21 Identities=38% Similarity=0.757 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~ 51 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSK 51 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 196
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=89.67 E-value=0.19 Score=48.54 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~ 47 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVS 47 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHH
Confidence 568999999999999999766
No 197
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=89.65 E-value=0.14 Score=46.24 Aligned_cols=16 Identities=44% Similarity=0.607 Sum_probs=14.4
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|.|+||+|||||+.
T Consensus 2 i~i~GpsGsGKstl~~ 17 (137)
T cd00071 2 IVLSGPSGVGKSTLLK 17 (137)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999999776
No 198
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.65 E-value=0.17 Score=47.63 Aligned_cols=21 Identities=48% Similarity=0.695 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~ 51 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLD 51 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 199
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.64 E-value=0.18 Score=49.84 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk 43 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIK 43 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 200
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=89.64 E-value=0.27 Score=47.82 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~ 65 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLK 65 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 201
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=89.63 E-value=0.17 Score=49.30 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~ 49 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFN 49 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 202
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.62 E-value=0.18 Score=49.53 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~ 56 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIK 56 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 203
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=89.60 E-value=0.18 Score=52.79 Aligned_cols=21 Identities=43% Similarity=0.667 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|+||||||||..
T Consensus 30 ~~Ge~~~llGpsGsGKSTLLr 50 (351)
T PRK11432 30 KQGTMVTLLGPSGCGKTTVLR 50 (351)
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 468899999999999999765
No 204
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.59 E-value=0.18 Score=49.06 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLR 47 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 205
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.56 E-value=0.23 Score=50.37 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|.-+++.|+||+|||||..
T Consensus 28 ~~GE~VaiIG~SGaGKSTLLR 48 (258)
T COG3638 28 NQGEMVAIIGPSGAGKSTLLR 48 (258)
T ss_pred CCCcEEEEECCCCCcHHHHHH
Confidence 567889999999999999866
No 206
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=89.54 E-value=0.19 Score=49.99 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~ 51 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLR 51 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 207
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=89.54 E-value=0.18 Score=53.40 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=18.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|+||||||||..
T Consensus 38 ~~Ge~~~LlGpsGsGKSTLLr 58 (375)
T PRK09452 38 NNGEFLTLLGPSGCGKTTVLR 58 (375)
T ss_pred eCCCEEEEECCCCCcHHHHHH
Confidence 468899999999999999665
No 208
>PRK14530 adenylate kinase; Provisional
Probab=89.52 E-value=0.17 Score=48.62 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|+|++|+||||++.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~ 21 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSS 21 (215)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4579999999999999877
No 209
>CHL00181 cbbX CbbX; Provisional
Probab=89.52 E-value=0.17 Score=51.48 Aligned_cols=48 Identities=29% Similarity=0.367 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHhcccCCeeeeccccccCCCCCEEEEEeCCCCCcccccc
Q 011235 303 EMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 303 EmKK~iltl~~~~l~~~G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+-+..+..++...+ +--+-+......|..++|+|++||||||++.
T Consensus 30 ~vK~~i~e~~~~~~~~~--~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 30 PVKTRIREIAALLLIDR--LRKNLGLTSSNPGLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHcCCCCCCCCceEEEECCCCCCHHHHHH
Confidence 57777766665433211 0001121122346679999999999999877
No 210
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.52 E-value=0.19 Score=49.79 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~ 65 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLR 65 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 211
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.52 E-value=0.18 Score=50.62 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~ 55 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQ 55 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 212
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.50 E-value=0.18 Score=50.14 Aligned_cols=21 Identities=38% Similarity=0.775 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~ 51 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQ 51 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 213
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=89.49 E-value=0.14 Score=46.45 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=13.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..+..+++.|++|+|||+|..
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~ 42 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLR 42 (185)
T ss_dssp -----EEE-B-TTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 345789999999999999766
No 214
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=89.48 E-value=0.18 Score=52.79 Aligned_cols=21 Identities=43% Similarity=0.713 Sum_probs=18.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.++|+||||||||..
T Consensus 28 ~~Ge~~~llG~sGsGKSTLLr 48 (356)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLR 48 (356)
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 468899999999999999765
No 215
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=89.46 E-value=0.16 Score=54.00 Aligned_cols=21 Identities=38% Similarity=0.914 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|+||+|||||..
T Consensus 48 ~~Gei~~I~G~nGsGKSTLlr 68 (382)
T TIGR03415 48 EEGEICVLMGLSGSGKSSLLR 68 (382)
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 568999999999999999766
No 216
>PTZ00301 uridine kinase; Provisional
Probab=89.45 E-value=0.15 Score=49.72 Aligned_cols=17 Identities=53% Similarity=0.659 Sum_probs=15.6
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.+.+-|.||+|||||+.
T Consensus 5 iIgIaG~SgSGKTTla~ 21 (210)
T PTZ00301 5 VIGISGASGSGKSSLST 21 (210)
T ss_pred EEEEECCCcCCHHHHHH
Confidence 58899999999999986
No 217
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=89.43 E-value=0.19 Score=49.98 Aligned_cols=21 Identities=38% Similarity=0.722 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~ 51 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFK 51 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 218
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=89.40 E-value=0.18 Score=43.08 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=14.6
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|+|.+|+|||||-.
T Consensus 2 V~iiG~~~~GKSTlin 17 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLIN 17 (116)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999999766
No 219
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=89.37 E-value=0.2 Score=48.86 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLR 47 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 220
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=89.36 E-value=0.19 Score=43.56 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.4
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|-.++++|++|+|||||..
T Consensus 1 ~~~i~l~G~~~~GKstli~ 19 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLN 19 (157)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999999765
No 221
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.33 E-value=0.23 Score=50.36 Aligned_cols=30 Identities=30% Similarity=0.581 Sum_probs=22.9
Q ss_pred eeccccccC-CCCCEEEEEeCCCCCcccccc
Q 011235 323 SLHSGCNMG-KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 323 ~~H~sani~-~~g~~~lffGlSGtGKTTLs~ 352 (490)
.+|-+.++. ..|....|+|+||||||||..
T Consensus 22 ~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr 52 (263)
T COG1127 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLR 52 (263)
T ss_pred EEecCceeeecCCcEEEEECCCCcCHHHHHH
Confidence 344444444 568899999999999999766
No 222
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.28 E-value=0.2 Score=49.86 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 37 ~~Ge~~~l~G~nGsGKSTLl~ 57 (269)
T PRK14259 37 PRGKVTALIGPSGCGKSTVLR 57 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 223
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.28 E-value=0.2 Score=47.11 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~ 44 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLR 44 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 224
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=89.27 E-value=0.21 Score=47.31 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~ 52 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLIL 52 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 225
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=89.24 E-value=0.21 Score=47.59 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~ 48 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLL 48 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 226
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=89.20 E-value=0.2 Score=47.77 Aligned_cols=21 Identities=43% Similarity=0.764 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~ 42 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLN 42 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 227
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=89.19 E-value=0.16 Score=47.29 Aligned_cols=18 Identities=44% Similarity=0.704 Sum_probs=16.2
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
+.++|.|.+|||||||..
T Consensus 2 krimliG~~g~GKTTL~q 19 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQ 19 (143)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999999987
No 228
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.19 E-value=0.21 Score=48.00 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~ 46 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVN 46 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 229
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.18 E-value=0.21 Score=48.88 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~ 48 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLR 48 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 230
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=89.16 E-value=0.2 Score=53.00 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=18.4
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|+||||||||..
T Consensus 43 ~~Ge~~~llGpsGsGKSTLLr 63 (377)
T PRK11607 43 YKGEIFALLGASGCGKSTLLR 63 (377)
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 468899999999999999755
No 231
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=89.16 E-value=0.2 Score=49.21 Aligned_cols=21 Identities=48% Similarity=0.583 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~ 50 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLN 50 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 232
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.16 E-value=0.22 Score=46.04 Aligned_cols=21 Identities=43% Similarity=0.643 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~ 46 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLK 46 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 233
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=89.16 E-value=0.16 Score=48.98 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=15.9
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
.+++|.|++|+||||+.+
T Consensus 2 ~vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred EEEEEECCCCCchHhHHH
Confidence 468999999999999766
No 234
>PRK06696 uridine kinase; Validated
Probab=89.16 E-value=0.17 Score=48.96 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=16.3
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.+++-|.||||||||+.
T Consensus 23 ~iI~I~G~sgsGKSTlA~ 40 (223)
T PRK06696 23 LRVAIDGITASGKTTFAD 40 (223)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 369999999999999887
No 235
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=89.15 E-value=0.2 Score=52.12 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|+||||||||..
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~ 42 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLIN 42 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 236
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=89.14 E-value=0.17 Score=43.93 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=14.5
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++++|.+|+|||||..
T Consensus 2 i~l~G~~g~GKTtL~~ 17 (170)
T cd01876 2 IAFAGRSNVGKSSLIN 17 (170)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 6899999999999876
No 237
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.13 E-value=0.21 Score=49.69 Aligned_cols=21 Identities=33% Similarity=0.733 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~ 53 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISK 53 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999755
No 238
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=89.13 E-value=0.21 Score=47.62 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=18.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~ 45 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLL 45 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 239
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=89.13 E-value=0.21 Score=47.79 Aligned_cols=21 Identities=38% Similarity=0.697 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~ 58 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVA 58 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 240
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=89.12 E-value=0.21 Score=49.05 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.++++|.||+|||||..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~ 49 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLR 49 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 241
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=89.11 E-value=0.21 Score=49.38 Aligned_cols=21 Identities=38% Similarity=0.707 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~ 46 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLR 46 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 242
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=89.10 E-value=0.2 Score=48.15 Aligned_cols=21 Identities=48% Similarity=0.718 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk 51 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLD 51 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHH
Confidence 567899999999999999766
No 243
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.10 E-value=0.21 Score=49.63 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=18.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~ 45 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFM 45 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 458899999999999999765
No 244
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=89.09 E-value=0.21 Score=50.14 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|+||+|||||..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~ 45 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLK 45 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 245
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.07 E-value=0.21 Score=47.52 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~ 51 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLK 51 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 246
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=89.06 E-value=0.11 Score=48.30 Aligned_cols=13 Identities=38% Similarity=0.938 Sum_probs=11.8
Q ss_pred EeCCCCCcccccc
Q 011235 340 FGLSGTGKTTLST 352 (490)
Q Consensus 340 fGlSGtGKTTLs~ 352 (490)
+|+||||||||+.
T Consensus 1 ~G~sGsGKSTla~ 13 (163)
T PRK11545 1 MGVSGSGKSAVAS 13 (163)
T ss_pred CCCCCCcHHHHHH
Confidence 5999999999876
No 247
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=89.01 E-value=0.21 Score=49.52 Aligned_cols=21 Identities=33% Similarity=0.703 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|++|+|||||..
T Consensus 37 ~~Ge~~~i~G~NGsGKSTLl~ 57 (267)
T PRK15112 37 REGQTLAIIGENGSGKSTLAK 57 (267)
T ss_pred cCCCEEEEEcCCCCCHHHHHH
Confidence 568899999999999999765
No 248
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=89.00 E-value=0.21 Score=52.28 Aligned_cols=21 Identities=43% Similarity=0.683 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|+||||||||..
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr 46 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLR 46 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999766
No 249
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.00 E-value=0.22 Score=48.75 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~ 50 (253)
T PRK14261 30 PKNRVTALIGPSGCGKSTLLR 50 (253)
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 250
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=88.97 E-value=0.22 Score=49.33 Aligned_cols=21 Identities=38% Similarity=0.703 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~ 55 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLAR 55 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999766
No 251
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.97 E-value=0.36 Score=55.15 Aligned_cols=82 Identities=24% Similarity=0.379 Sum_probs=46.2
Q ss_pred EEEEEeCCCCCccccccc----CCCceeecCceee-------------------cCCCcc----ccCcceEEeecCCCCC
Q 011235 336 VALFFGLSGTGKTTLSTD----HNRYLIGDDEHCW-------------------GDNGVS----NIEGGCYAKCIDLSRE 388 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~~----~~~~lI~DD~~~w-------------------sd~Gvf----n~EgGcYaK~~dLs~e 388 (490)
+++|.|++|+|||+|+.. -+..++.=|..-+ ++.|.+ .--+.+..-.+.+.+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEiek- 564 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEK- 564 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhh-
Confidence 489999999999998761 1233332111111 111111 112445666777764
Q ss_pred CCcchhhcccccceeee-eEEcCCCCeeecCCC
Q 011235 389 KEPDIWNAIKFGAVLEN-VVFDEHTREVDYSDK 420 (490)
Q Consensus 389 ~eP~I~~Ai~f~ailEN-V~lD~~~~~vdf~d~ 420 (490)
..|++++.+ -.++++ .+.|..++.+||.+.
T Consensus 565 a~~~~~~~L--l~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 565 AHPDIYNIL--LQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred cCHHHHHHH--HHhhccCeeecCCCcccCCCCC
Confidence 567787764 234444 444666788888765
No 252
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.95 E-value=0.22 Score=48.63 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~ 48 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLR 48 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999766
No 253
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=88.94 E-value=0.23 Score=48.26 Aligned_cols=21 Identities=33% Similarity=0.702 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+++++.|+||+|||||..
T Consensus 26 ~~getlvllgpsgagkssllr 46 (242)
T COG4161 26 PEGETLVLLGPSGAGKSSLLR 46 (242)
T ss_pred CCCCEEEEECCCCCchHHHHH
Confidence 579999999999999999765
No 254
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=88.94 E-value=0.22 Score=49.09 Aligned_cols=21 Identities=38% Similarity=0.713 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~ 48 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLR 48 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 255
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=88.94 E-value=0.22 Score=51.41 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+.|.|.||+|||||..
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~ 51 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAK 51 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999999766
No 256
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=88.93 E-value=0.21 Score=52.48 Aligned_cols=21 Identities=43% Similarity=0.790 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|+||||||||..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLL~ 47 (369)
T PRK11000 27 HEGEFVVFVGPSGCGKSTLLR 47 (369)
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 468899999999999999765
No 257
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=88.93 E-value=0.21 Score=54.10 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=19.1
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|+.+++.|+||+|||||..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~ 379 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLM 379 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999776
No 258
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=88.91 E-value=0.21 Score=48.21 Aligned_cols=21 Identities=38% Similarity=0.714 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~ 49 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLG 49 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 259
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=88.91 E-value=0.22 Score=49.41 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~ 64 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLR 64 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 260
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.86 E-value=0.23 Score=48.43 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~ 47 (249)
T PRK14253 27 PARQVTALIGPSGCGKSTLLR 47 (249)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 261
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=88.85 E-value=0.22 Score=49.23 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~ 48 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVR 48 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 262
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.83 E-value=0.23 Score=48.39 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~ 48 (252)
T PRK14272 28 QRGTVNALIGPSGCGKTTFLR 48 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 263
>PRK14531 adenylate kinase; Provisional
Probab=88.80 E-value=0.18 Score=47.33 Aligned_cols=17 Identities=41% Similarity=0.647 Sum_probs=15.6
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++||||||++.
T Consensus 4 ~i~i~G~pGsGKsT~~~ 20 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAA 20 (183)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999877
No 264
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=88.79 E-value=0.22 Score=50.39 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.|.|++|+|||||..
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~ 37 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIR 37 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 265
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=88.79 E-value=0.19 Score=50.83 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=18.3
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..+.+++|.|++|+||||+.+
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 456799999999999999766
No 266
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=88.77 E-value=0.23 Score=48.76 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|++|+|||||..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~ 47 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCA 47 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 267
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=88.74 E-value=0.16 Score=54.23 Aligned_cols=35 Identities=37% Similarity=0.638 Sum_probs=27.5
Q ss_pred CCCEEEEEeCCCCCcccccccCCCceeecCceeec
Q 011235 333 DGDVALFFGLSGTGKTTLSTDHNRYLIGDDEHCWG 367 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~~~~~~lI~DD~~~ws 367 (490)
.|-++-|.||||+||||+|...+++|+.-.+-+.+
T Consensus 49 rgctvw~tglsgagkttis~ale~~l~~~gipcy~ 83 (627)
T KOG4238|consen 49 RGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYS 83 (627)
T ss_pred cceeEEeeccCCCCcceeehHHHHHHHhcCCcccc
Confidence 45689999999999999999777777665555544
No 268
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=88.73 E-value=0.21 Score=52.62 Aligned_cols=21 Identities=38% Similarity=0.743 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|+||||||||..
T Consensus 17 ~~Gei~~l~G~sGsGKSTLLr 37 (363)
T TIGR01186 17 AKGEIFVIMGLSGSGKSTTVR 37 (363)
T ss_pred cCCCEEEEECCCCChHHHHHH
Confidence 568999999999999999765
No 269
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.71 E-value=0.23 Score=48.52 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|++|+|||||..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLR 47 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999755
No 270
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=88.71 E-value=0.23 Score=48.13 Aligned_cols=21 Identities=43% Similarity=0.781 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~ 45 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSA 45 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 271
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.70 E-value=0.23 Score=49.38 Aligned_cols=21 Identities=43% Similarity=0.893 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~ 68 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLR 68 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 272
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.69 E-value=0.24 Score=44.81 Aligned_cols=21 Identities=38% Similarity=0.716 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+..+|.|++|+|||||..
T Consensus 23 ~~g~~~~i~G~nGsGKStll~ 43 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLR 43 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 273
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.67 E-value=0.24 Score=48.33 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~ 48 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLR 48 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 274
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.66 E-value=0.079 Score=63.37 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=17.2
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|.++++.|+|||||||+-.
T Consensus 1015 ~GqTvALVG~SGsGKSTvI~ 1034 (1228)
T KOG0055|consen 1015 AGQTVALVGPSGSGKSTVIS 1034 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 48899999999999999433
No 275
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=88.64 E-value=0.24 Score=49.05 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|++|+|||||..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~ 51 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLR 51 (265)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 276
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=88.64 E-value=0.23 Score=51.67 Aligned_cols=21 Identities=48% Similarity=0.650 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|+||+|||||..
T Consensus 21 ~~Gei~~l~G~nGsGKSTLl~ 41 (354)
T TIGR02142 21 PGQGVTAIFGRSGSGKTTLIR 41 (354)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 277
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=88.61 E-value=0.24 Score=49.27 Aligned_cols=21 Identities=43% Similarity=0.751 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~ 56 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLAR 56 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 278
>PRK00698 tmk thymidylate kinase; Validated
Probab=88.60 E-value=0.2 Score=46.68 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=16.9
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..++|.|++|+||||++.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~ 21 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIE 21 (205)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4579999999999999876
No 279
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=88.59 E-value=0.16 Score=43.91 Aligned_cols=17 Identities=35% Similarity=0.726 Sum_probs=14.7
Q ss_pred EEEEeCCCCCccccccc
Q 011235 337 ALFFGLSGTGKTTLSTD 353 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~~ 353 (490)
+.|+|++|+|||+|+..
T Consensus 1 I~i~G~~G~GKS~l~~~ 17 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKE 17 (107)
T ss_pred CEEECCCCCCHHHHHHH
Confidence 47999999999998773
No 280
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.59 E-value=0.24 Score=47.84 Aligned_cols=21 Identities=48% Similarity=0.711 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~ 44 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLR 44 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468999999999999999765
No 281
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.58 E-value=0.24 Score=48.35 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~ 49 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLR 49 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 458899999999999999766
No 282
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=88.57 E-value=0.24 Score=48.11 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~ 44 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLR 44 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999755
No 283
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=88.55 E-value=0.24 Score=50.26 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~ 48 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIAR 48 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 284
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=88.52 E-value=0.24 Score=49.10 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~ 63 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLR 63 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 285
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=88.51 E-value=0.25 Score=47.48 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=21.5
Q ss_pred CeeeeccccccCCCCCEEEEEeCCCCCcccccc
Q 011235 320 QILSLHSGCNMGKDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 320 G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~ 352 (490)
++-++++...+.-+...++|.|++|+|||||..
T Consensus 8 nfr~~~~~~~l~~~~g~~~i~G~NGsGKTTLl~ 40 (204)
T cd03240 8 NIRSFHERSEIEFFSPLTLIVGQNGAGKTTIIE 40 (204)
T ss_pred CcccccCceEEecCCCeEEEECCCCCCHHHHHH
Confidence 344444443343222389999999999999654
No 286
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.50 E-value=0.25 Score=48.26 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+||+|||||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~ 46 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLR 46 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 287
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.50 E-value=0.24 Score=49.50 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.|+|+||+|||||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~ 49 (274)
T PRK13647 29 PEGSKTALLGPNGAGKSTLLL 49 (274)
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 568999999999999999765
No 288
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=88.48 E-value=0.25 Score=49.27 Aligned_cols=21 Identities=33% Similarity=0.571 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~ 68 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIK 68 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 289
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.42 E-value=0.25 Score=48.63 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~ 56 (258)
T PRK14268 36 PKNSVTALIGPSGCGKSTFIR 56 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 458899999999999999765
No 290
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=88.42 E-value=0.26 Score=46.78 Aligned_cols=21 Identities=43% Similarity=0.798 Sum_probs=18.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|.+|+|||||..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~ 44 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAK 44 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999655
No 291
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=88.36 E-value=0.25 Score=48.44 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|++|+|||||..
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~ 46 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLK 46 (255)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 292
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.35 E-value=0.26 Score=47.45 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~ 45 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILR 45 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 293
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.33 E-value=0.26 Score=48.17 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~ 48 (251)
T PRK14249 28 PERQITAIIGPSGCGKSTLLR 48 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 294
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=88.33 E-value=0.23 Score=46.19 Aligned_cols=21 Identities=43% Similarity=0.711 Sum_probs=18.4
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|+||+||||++.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~ 36 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIAN 36 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 456789999999999999876
No 295
>PRK14737 gmk guanylate kinase; Provisional
Probab=88.32 E-value=0.23 Score=47.44 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=17.4
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|+||+|||||..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~ 22 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQ 22 (186)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35679999999999999876
No 296
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=88.32 E-value=0.24 Score=46.50 Aligned_cols=19 Identities=37% Similarity=0.420 Sum_probs=17.0
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
++.++++|+||+||+||..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~ 20 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLA 20 (184)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5679999999999999876
No 297
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.30 E-value=0.25 Score=49.68 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|++|+|||||..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~ 51 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQ 51 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 298
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=88.27 E-value=0.26 Score=46.58 Aligned_cols=21 Identities=43% Similarity=0.722 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|++|+|||||..
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~ 53 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLN 53 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 299
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=88.27 E-value=0.17 Score=55.88 Aligned_cols=67 Identities=21% Similarity=0.351 Sum_probs=40.0
Q ss_pred CCCCEEEEEeCCCCCcccccc------cCCC-ceeecCceeecCCCccccCcceEEeecCCCCCCCcchhhcccccceee
Q 011235 332 KDGDVALFFGLSGTGKTTLST------DHNR-YLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLE 404 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~------~~~~-~lI~DD~~~wsd~Gvfn~EgGcYaK~~dLs~e~eP~I~~Ai~f~ailE 404 (490)
.-|....+.|+||+|||||+. .|.+ .+=-| ...+..++.-.+.|-+++-+ ++-|+| .|+|-|
T Consensus 360 ~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLD------ga~l~qWd~e~lG~hiGYLP-QdVeLF----~GTIae 428 (580)
T COG4618 360 QAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLD------GADLRQWDREQLGRHIGYLP-QDVELF----DGTIAE 428 (580)
T ss_pred cCCceEEEECCCCccHHHHHHHHHcccccCCCcEEec------chhhhcCCHHHhccccCcCc-ccceec----CCcHHH
Confidence 457899999999999999876 1211 11111 11123455556777777765 233333 368888
Q ss_pred ee-EEc
Q 011235 405 NV-VFD 409 (490)
Q Consensus 405 NV-~lD 409 (490)
|+ .|+
T Consensus 429 NIaRf~ 434 (580)
T COG4618 429 NIARFG 434 (580)
T ss_pred HHHhcc
Confidence 84 454
No 300
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=88.26 E-value=0.26 Score=48.83 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~ 54 (264)
T PRK14243 34 PKNQITAFIGPSGCGKSTILR 54 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 301
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=88.25 E-value=0.23 Score=42.02 Aligned_cols=16 Identities=44% Similarity=0.632 Sum_probs=14.4
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++++|.+|+|||||..
T Consensus 2 I~V~G~~g~GKTsLi~ 17 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIR 17 (119)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECcCCCCHHHHHH
Confidence 7899999999999765
No 302
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=88.22 E-value=0.24 Score=46.32 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=16.2
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|++|||||||+.
T Consensus 5 ~~I~liG~~GaGKStl~~ 22 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGR 22 (172)
T ss_pred CEEEEECCCCcCHHHHHH
Confidence 469999999999999877
No 303
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=88.20 E-value=0.24 Score=46.89 Aligned_cols=20 Identities=40% Similarity=0.815 Sum_probs=16.6
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
++..++|+|++|||||.|+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ 65 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAV 65 (178)
T ss_dssp C--EEEEEESTTSSHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHH
Confidence 46679999999999999877
No 304
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.19 E-value=0.25 Score=46.84 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=17.1
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|+|++|||||+|+.
T Consensus 38 ~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999999876
No 305
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=88.17 E-value=0.26 Score=48.33 Aligned_cols=21 Identities=33% Similarity=0.581 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~ 45 (256)
T TIGR03873 25 PPGSLTGLLGPNGSGKSTLLR 45 (256)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568999999999999999766
No 306
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.14 E-value=0.23 Score=52.87 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=18.3
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|.+++|+|++|+||||+.+
T Consensus 135 ~~g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 456799999999999999776
No 307
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=88.13 E-value=0.26 Score=51.19 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+||+|||||..
T Consensus 29 ~~Gei~~iiG~nGsGKSTLlk 49 (343)
T PRK11153 29 PAGEIFGVIGASGAGKSTLIR 49 (343)
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 568899999999999999766
No 308
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=88.10 E-value=0.25 Score=50.47 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|+||+|||||..
T Consensus 31 ~~Ge~v~iiG~nGsGKSTLl~ 51 (305)
T PRK13651 31 NQGEFIAIIGQTGSGKTTFIE 51 (305)
T ss_pred eCCCEEEEECCCCCcHHHHHH
Confidence 468999999999999999766
No 309
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=88.10 E-value=0.23 Score=46.92 Aligned_cols=17 Identities=47% Similarity=0.583 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
+++|.|+||+|||+|+.
T Consensus 5 ~~ll~GpsGvGKT~la~ 21 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAK 21 (171)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999776
No 310
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=88.09 E-value=0.23 Score=42.77 Aligned_cols=16 Identities=44% Similarity=0.646 Sum_probs=14.5
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|+|++|+|||||..
T Consensus 2 i~i~G~~~~GKssl~~ 17 (159)
T cd04159 2 ITLVGLQNSGKTTLVN 17 (159)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 6899999999999866
No 311
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.05 E-value=0.26 Score=46.36 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=18.1
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..++|.|++|+|||||..
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLN 43 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHH
Confidence 457789999999999999755
No 312
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.01 E-value=0.27 Score=49.33 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~ 51 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAK 51 (279)
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 468899999999999999765
No 313
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.99 E-value=0.28 Score=47.81 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14266 27 PKNSVTALIGPSGCGKSTFIR 47 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 314
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.97 E-value=0.28 Score=48.51 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 40 ~~Ge~~~i~G~nGsGKSTLl~ 60 (265)
T PRK14252 40 HEKQVTALIGPSGCGKSTFLR 60 (265)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 315
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=87.97 E-value=0.26 Score=50.99 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|.||+|||||..
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~ 59 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLAR 59 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHH
Confidence 568999999999999999766
No 316
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.95 E-value=0.27 Score=49.63 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|++|+|||||..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~ 51 (290)
T PRK13634 31 PSGSYVAIIGHTGSGKSTLLQ 51 (290)
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 578999999999999999766
No 317
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=87.95 E-value=0.27 Score=51.71 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=18.4
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|+|+||||||||..
T Consensus 29 ~~Ge~~~llGpsGsGKSTLLr 49 (362)
T TIGR03258 29 EAGELLALIGKSGCGKTTLLR 49 (362)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999655
No 318
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=87.95 E-value=0.26 Score=47.33 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=17.0
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|+.+++.|++|+|||||..
T Consensus 25 g~~~~ltGpNg~GKSTllr 43 (199)
T cd03283 25 KNGILITGSNMSGKSTFLR 43 (199)
T ss_pred CcEEEEECCCCCChHHHHH
Confidence 5889999999999999754
No 319
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.95 E-value=0.28 Score=48.36 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk 51 (259)
T PRK14260 31 YRNKVTAIIGPSGCGKSTFIK 51 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 320
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=87.93 E-value=0.27 Score=50.79 Aligned_cols=21 Identities=43% Similarity=0.601 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|.||+|||||..
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~ 51 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSL 51 (326)
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 568899999999999999865
No 321
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=87.91 E-value=0.28 Score=48.13 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|++|+|||||..
T Consensus 20 ~~Gei~~l~G~nGsGKSTLl~ 40 (248)
T PRK03695 20 RAGEILHLVGPNGAGKSTLLA 40 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 322
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.90 E-value=0.28 Score=49.00 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 44 ~~Ge~~~IiG~nGsGKSTLl~ 64 (274)
T PRK14265 44 PAKKIIAFIGPSGCGKSTLLR 64 (274)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 323
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.85 E-value=0.28 Score=49.38 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 63 ~~Ge~~~l~G~nGsGKSTLl~ 83 (286)
T PRK14275 63 LSKYVTAIIGPSGCGKSTFLR 83 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 324
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=87.84 E-value=0.29 Score=46.86 Aligned_cols=21 Identities=48% Similarity=0.778 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|++|+|||||..
T Consensus 29 ~~G~~~~I~G~nGsGKStLl~ 49 (220)
T TIGR02982 29 NPGEIVILTGPSGSGKTTLLT 49 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999766
No 325
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=87.79 E-value=0.28 Score=48.21 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=18.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|||||||+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~ 42 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQ 42 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 446789999999999999864
No 326
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=87.77 E-value=0.2 Score=58.30 Aligned_cols=83 Identities=24% Similarity=0.330 Sum_probs=46.3
Q ss_pred EEEEEeCCCCCcccccccC-------CCceeecCceeecC-----------CCcccc-Cc-----------ceEEeecCC
Q 011235 336 VALFFGLSGTGKTTLSTDH-------NRYLIGDDEHCWGD-----------NGVSNI-EG-----------GCYAKCIDL 385 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~~~-------~~~lI~DD~~~wsd-----------~Gvfn~-Eg-----------GcYaK~~dL 385 (490)
+++|+|++|+|||.|+..- +..++.=|+.-+.+ -|..+. |+ .+-.-.|++
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEi 677 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEV 677 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEech
Confidence 5899999999999987521 22333333222211 111111 22 234556666
Q ss_pred CCCCCcchhhcccccceeeeeEEcCCCCeeecCCC
Q 011235 386 SREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDK 420 (490)
Q Consensus 386 s~e~eP~I~~Ai~f~ailENV~lD~~~~~vdf~d~ 420 (490)
.+ ..|++++.+- ..+.+...-|..|+.|||.+.
T Consensus 678 ek-a~~~v~~~Ll-q~ld~g~l~d~~Gr~vd~~n~ 710 (852)
T TIGR03345 678 EK-AHPDVLELFY-QVFDKGVMEDGEGREIDFKNT 710 (852)
T ss_pred hh-cCHHHHHHHH-HHhhcceeecCCCcEEecccc
Confidence 53 5677776541 233344556778899999765
No 327
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.71 E-value=0.29 Score=49.31 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 63 ~~Ge~~~I~G~nGsGKSTLl~ 83 (285)
T PRK14254 63 PENQVTAMIGPSGCGKSTFLR 83 (285)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 328
>PRK14532 adenylate kinase; Provisional
Probab=87.70 E-value=0.23 Score=46.25 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++||||||++.
T Consensus 2 ~i~~~G~pGsGKsT~a~ 18 (188)
T PRK14532 2 NLILFGPPAAGKGTQAK 18 (188)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999999877
No 329
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=87.67 E-value=0.3 Score=48.72 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+||+|||||..
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk 44 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALK 44 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 330
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=87.64 E-value=0.39 Score=47.57 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=21.0
Q ss_pred cCCCCCEEEEEeCCCCCcccccc-cCCCce
Q 011235 330 MGKDGDVALFFGLSGTGKTTLST-DHNRYL 358 (490)
Q Consensus 330 i~~~g~~~lffGlSGtGKTTLs~-~~~~~l 358 (490)
+.+....++|.|++|+||||++. -+++.+
T Consensus 8 ~~~~~~~~liyG~~G~GKtt~a~~~~~~~~ 37 (220)
T TIGR01618 8 IKRIPNMYLIYGKPGTGKTSTIKYLPGKTL 37 (220)
T ss_pred cCCCCcEEEEECCCCCCHHHHHHhcCCCCE
Confidence 33334569999999999999886 344443
No 331
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=87.63 E-value=0.27 Score=44.14 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=16.1
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++++|++|+|||||..
T Consensus 15 ~~v~i~G~~g~GKStLl~ 32 (173)
T cd04155 15 PRILILGLDNAGKTTILK 32 (173)
T ss_pred cEEEEEccCCCCHHHHHH
Confidence 469999999999999766
No 332
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.62 E-value=0.29 Score=49.05 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~ 51 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVR 51 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 333
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=87.60 E-value=0.31 Score=47.77 Aligned_cols=38 Identities=26% Similarity=0.390 Sum_probs=25.0
Q ss_pred hcccCCeeeecccccc--C-CCCCEEEEEeCCCCCcccccc
Q 011235 315 LMPKRQILSLHSGCNM--G-KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 315 ~l~~~G~L~~H~sani--~-~~g~~~lffGlSGtGKTTLs~ 352 (490)
.|++||.+-+.--.++ . +.|..+++-|+||+|||||..
T Consensus 15 tlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr 55 (235)
T COG4778 15 TLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLR 55 (235)
T ss_pred EeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHH
Confidence 3555554333212233 2 568899999999999999765
No 334
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=87.57 E-value=0.23 Score=45.82 Aligned_cols=16 Identities=38% Similarity=0.638 Sum_probs=14.9
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++++|++||||||++.
T Consensus 2 I~i~G~pGsGKst~a~ 17 (194)
T cd01428 2 ILLLGPPGSGKGTQAE 17 (194)
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999999887
No 335
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.57 E-value=0.3 Score=49.05 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 31 ~~Ge~~~I~G~nGaGKSTLl~ 51 (282)
T PRK13640 31 PRGSWTALIGHNGSGKSTISK 51 (282)
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 468899999999999999765
No 336
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=87.56 E-value=0.3 Score=49.98 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=19.1
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|.+..+.|.||||||||..
T Consensus 37 ~~ge~~glVGESG~GKSTlgr 57 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGR 57 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHH
Confidence 578999999999999999865
No 337
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=87.55 E-value=0.3 Score=48.59 Aligned_cols=21 Identities=43% Similarity=0.618 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 49 ~~Ge~~~I~G~nGsGKSTLl~ 69 (272)
T PRK14236 49 PKNRVTAFIGPSGCGKSTLLR 69 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 338
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=87.55 E-value=0.23 Score=46.81 Aligned_cols=16 Identities=44% Similarity=0.563 Sum_probs=14.8
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
+++.|.||||||||+.
T Consensus 2 i~i~G~sgsGKttla~ 17 (179)
T cd02028 2 VGIAGPSGSGKTTFAK 17 (179)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999999987
No 339
>PRK08356 hypothetical protein; Provisional
Probab=87.53 E-value=0.28 Score=46.38 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=16.6
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
+...++|+|++|+||||++.
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~ 23 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAK 23 (195)
T ss_pred CcEEEEEECCCCCCHHHHHH
Confidence 33468899999999999766
No 340
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.50 E-value=0.3 Score=48.75 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~ 46 (275)
T PRK13639 26 EKGEMVALLGPNGAGKSTLFL 46 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 341
>PRK02496 adk adenylate kinase; Provisional
Probab=87.50 E-value=0.24 Score=46.06 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+||||++.
T Consensus 3 ~i~i~G~pGsGKst~a~ 19 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAV 19 (184)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999877
No 342
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=87.47 E-value=0.3 Score=51.12 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+||||||||..
T Consensus 29 ~~Gei~gIiG~sGaGKSTLlr 49 (343)
T TIGR02314 29 PAGQIYGVIGASGAGKSTLIR 49 (343)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 343
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.46 E-value=0.31 Score=48.85 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 45 ~~Ge~~~I~G~nGsGKSTLl~ 65 (276)
T PRK14271 45 PARAVTSLMGPTGSGKTTFLR 65 (276)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 344
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=87.44 E-value=0.28 Score=50.75 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.|.|.||+|||||..
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~ 60 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAF 60 (330)
T ss_pred cCCCEEEEECCCCchHHHHHH
Confidence 568999999999999999766
No 345
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=87.43 E-value=0.29 Score=49.45 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
.-|..+++.|.||+|||||..
T Consensus 19 p~g~~~~vtGvSGsGKStL~~ 39 (261)
T cd03271 19 PLGVLTCVTGVSGSGKSSLIN 39 (261)
T ss_pred cCCcEEEEECCCCCchHHHHH
Confidence 458889999999999999876
No 346
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=87.41 E-value=0.31 Score=46.81 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=17.2
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
+|..++|.|++|+|||||..
T Consensus 27 ~~~~~~i~G~NGsGKSTll~ 46 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILD 46 (213)
T ss_pred ccCEEEEECCCCCCHHHHHH
Confidence 36789999999999999654
No 347
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.35 E-value=0.3 Score=49.10 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 31 ~~Ge~~~iiG~NGaGKSTLl~ 51 (287)
T PRK13641 31 EEGSFVALVGHTGSGKSTLMQ 51 (287)
T ss_pred eCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999766
No 348
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.35 E-value=0.31 Score=49.15 Aligned_cols=21 Identities=38% Similarity=0.703 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~ 51 (287)
T PRK13637 31 EDGEFVGLIGHTGSGKSTLIQ 51 (287)
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 468899999999999999765
No 349
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.34 E-value=0.31 Score=48.67 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|++|+|||||..
T Consensus 28 ~~Ge~~~i~G~NGsGKSTLl~ 48 (277)
T PRK13652 28 PRNSRIAVIGPNGAGKSTLFR 48 (277)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 350
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=87.34 E-value=0.25 Score=43.25 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=14.7
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|.|++||||||++.
T Consensus 2 I~i~G~~GsGKst~a~ 17 (147)
T cd02020 2 IAIDGPAGSGKSTVAK 17 (147)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999999877
No 351
>PHA00729 NTP-binding motif containing protein
Probab=87.30 E-value=0.25 Score=49.30 Aligned_cols=17 Identities=47% Similarity=0.757 Sum_probs=16.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|||||||+.
T Consensus 19 nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999988
No 352
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=87.30 E-value=0.26 Score=49.16 Aligned_cols=21 Identities=38% Similarity=0.713 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
.+|.++.++|+.|+||||+..
T Consensus 26 e~Gei~GlLG~NGAGKTT~LR 46 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLR 46 (245)
T ss_pred ccceEEEEEcCCCCCchhHHH
Confidence 579999999999999999654
No 353
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=87.28 E-value=0.3 Score=49.75 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=18.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..++|.|++|+|||||..
T Consensus 29 ~~Gei~gllG~NGAGKTTllk 49 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLK 49 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHH
Confidence 568899999999999999655
No 354
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=87.23 E-value=0.24 Score=48.45 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=14.3
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
+.|.|.||||||||+.
T Consensus 2 igI~G~sGSGKTTla~ 17 (220)
T cd02025 2 IGIAGSVAVGKSTTAR 17 (220)
T ss_pred EEeeCCCCCCHHHHHH
Confidence 5788999999999876
No 355
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=87.22 E-value=0.32 Score=48.67 Aligned_cols=21 Identities=33% Similarity=0.760 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|+|++|+|||||..
T Consensus 34 ~~Ge~~~l~G~nGsGKSTLl~ 54 (280)
T PRK13633 34 KKGEFLVILGRNGSGKSTIAK 54 (280)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 356
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.20 E-value=0.28 Score=48.15 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=16.2
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|++|||||+|+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 478999999999999876
No 357
>PRK06893 DNA replication initiation factor; Validated
Probab=87.19 E-value=0.24 Score=48.41 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=16.0
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|++|||||+|+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458999999999999877
No 358
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.17 E-value=0.59 Score=54.19 Aligned_cols=17 Identities=47% Similarity=0.688 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
+.+|.|++|+|||+|+.
T Consensus 541 ~~lf~Gp~GvGKt~lA~ 557 (821)
T CHL00095 541 SFLFSGPTGVGKTELTK 557 (821)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 47899999999999876
No 359
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=87.13 E-value=0.32 Score=50.41 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|.||+|||||..
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk 65 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFAR 65 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999766
No 360
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=87.11 E-value=0.36 Score=46.69 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=16.8
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
++...+|.|++|+|||||..
T Consensus 22 ~~~~~~i~GpNGsGKStll~ 41 (243)
T cd03272 22 SPKHNVVVGRNGSGKSNFFA 41 (243)
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 46689999999999999643
No 361
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=86.98 E-value=0.33 Score=48.51 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|++|+|||||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~ 46 (274)
T PRK13644 26 KKGEYIGIIGKNGSGKSTLAL 46 (274)
T ss_pred eCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 362
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=86.94 E-value=0.33 Score=53.13 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|.||+|||||..
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ 387 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 363
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=86.92 E-value=0.29 Score=46.21 Aligned_cols=21 Identities=29% Similarity=0.692 Sum_probs=18.3
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.++|++|||||+++.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~ 30 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICM 30 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 347789999999999999876
No 364
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=86.89 E-value=0.27 Score=44.97 Aligned_cols=17 Identities=47% Similarity=0.749 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|+.|+||||++.
T Consensus 2 ~I~ieG~~GsGKtT~~~ 18 (200)
T cd01672 2 FIVFEGIDGAGKTTLIE 18 (200)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999877
No 365
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.89 E-value=0.35 Score=46.94 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 23 ~~Ge~~~i~G~nG~GKStLl~ 43 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLE 43 (235)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999655
No 366
>PRK06526 transposase; Provisional
Probab=86.85 E-value=0.29 Score=49.09 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=17.6
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|++|||||+|+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred cCceEEEEeCCCCchHHHHH
Confidence 45679999999999999877
No 367
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=86.85 E-value=0.29 Score=48.98 Aligned_cols=18 Identities=50% Similarity=0.781 Sum_probs=16.1
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|++|||||+|+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999999876
No 368
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=86.84 E-value=0.35 Score=48.38 Aligned_cols=21 Identities=29% Similarity=0.552 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|++|+|||||..
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~ 51 (277)
T PRK13642 31 TKGEWVSIIGQNGSGKSTTAR 51 (277)
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 468899999999999999765
No 369
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=86.82 E-value=0.35 Score=48.57 Aligned_cols=21 Identities=43% Similarity=0.700 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 30 ~~Ge~~~i~G~nGaGKSTLl~ 50 (283)
T PRK13636 30 KKGEVTAILGGNGAGKSTLFQ 50 (283)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 370
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=86.77 E-value=0.35 Score=49.88 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||||||||..
T Consensus 50 ~~Ge~~~I~G~nGsGKSTLl~ 70 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVT 70 (320)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 371
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=86.74 E-value=0.33 Score=41.11 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.+++.|.+|+|||||..
T Consensus 3 ki~~~G~~~~GKstl~~ 19 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLN 19 (161)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999766
No 372
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.72 E-value=0.46 Score=51.15 Aligned_cols=43 Identities=16% Similarity=0.338 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHhcccCCeeeeccccccCCCCCEEEEEeCCCCCcccccc
Q 011235 303 EMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 303 EmKK~iltl~~~~l~~~G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~ 352 (490)
+++..++.++. ..+++..+..+ ..+..++|.|++|+||||+.+
T Consensus 182 ~v~~~~~~~L~------~~l~~~~~~~~-~~~~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 182 DITDWFVPYLS------GKLAVEDSFDL-SNHRIISLIGQTGVGKTTTLV 224 (407)
T ss_pred HHHHHHHHHhc------CcEeeCCCcee-cCCeEEEEECCCCCCHHHHHH
Confidence 34444444443 34444443322 357889999999999999776
No 373
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=86.68 E-value=0.31 Score=44.42 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=17.0
Q ss_pred cCCCCCEEEEEeCCCCCcccccc
Q 011235 330 MGKDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 330 i~~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.-+....+|+|++||||||+..
T Consensus 15 i~f~~g~~vi~G~Ng~GKStil~ 37 (202)
T PF13476_consen 15 IDFSPGLNVIYGPNGSGKSTILE 37 (202)
T ss_dssp EE--SEEEEEEESTTSSHHHHHH
T ss_pred EEcCCCcEEEECCCCCCHHHHHH
Confidence 33344589999999999999654
No 374
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=86.67 E-value=0.31 Score=46.46 Aligned_cols=20 Identities=40% Similarity=0.730 Sum_probs=17.8
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++++|.+|+|||||+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46789999999999999866
No 375
>PF05729 NACHT: NACHT domain
Probab=86.67 E-value=0.31 Score=43.00 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=15.9
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
+++++.|..|+||||+..
T Consensus 1 r~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLR 18 (166)
T ss_pred CEEEEECCCCCChHHHHH
Confidence 468999999999999776
No 376
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=86.66 E-value=0.28 Score=48.95 Aligned_cols=17 Identities=35% Similarity=0.688 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++||||||++.
T Consensus 4 liil~G~pGSGKSTla~ 20 (300)
T PHA02530 4 IILTVGVPGSGKSTWAR 20 (300)
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 57889999999999887
No 377
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.65 E-value=0.32 Score=46.31 Aligned_cols=18 Identities=50% Similarity=0.752 Sum_probs=16.7
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
+.+++.|++|+|||||..
T Consensus 24 e~~~i~G~nGsGKSTLl~ 41 (214)
T cd03297 24 EVTGIFGASGAGKSTLLR 41 (214)
T ss_pred eeEEEECCCCCCHHHHHH
Confidence 889999999999999766
No 378
>PRK01184 hypothetical protein; Provisional
Probab=86.55 E-value=0.31 Score=45.20 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=14.9
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.+++.|++||||||++.
T Consensus 3 ~i~l~G~~GsGKsT~a~ 19 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK 19 (184)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999755
No 379
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=86.53 E-value=0.37 Score=48.21 Aligned_cols=21 Identities=48% Similarity=0.811 Sum_probs=19.1
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 48 ~~Ge~~~liG~NGsGKSTLlk 68 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSN 68 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999999766
No 380
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=86.52 E-value=0.38 Score=47.42 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.++++|.+|+|||||..
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~ 65 (257)
T cd03288 45 KPGQKVGICGRTGSGKSSLSL 65 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 381
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=86.49 E-value=0.38 Score=47.55 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|.+|+|||||..
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~ 51 (261)
T PRK14258 31 YQSKVTAIIGPSGCGKSTFLK 51 (261)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 382
>PRK06620 hypothetical protein; Validated
Probab=86.47 E-value=0.3 Score=47.64 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=16.3
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|++|+|||+|..
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 569999999999999876
No 383
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=86.46 E-value=0.32 Score=47.02 Aligned_cols=19 Identities=32% Similarity=0.607 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..+++.|+||+||||++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~ 21 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISG 21 (197)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4578999999999999887
No 384
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=86.46 E-value=0.36 Score=48.67 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|++|+|||||..
T Consensus 30 ~~Ge~v~i~G~nGsGKSTLl~ 50 (288)
T PRK13643 30 KKGSYTALIGHTGSGKSTLLQ 50 (288)
T ss_pred cCCCEEEEECCCCChHHHHHH
Confidence 568899999999999999766
No 385
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=86.42 E-value=0.38 Score=48.92 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+.|||||||..
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk 46 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLK 46 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 386
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=86.42 E-value=0.33 Score=43.22 Aligned_cols=16 Identities=44% Similarity=0.704 Sum_probs=14.5
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|+|++|+|||||..
T Consensus 2 i~~vG~~~~GKstLi~ 17 (167)
T cd04160 2 VLILGLDNAGKTTFLE 17 (167)
T ss_pred EEEEecCCCCHHHHHH
Confidence 6899999999999766
No 387
>PRK13947 shikimate kinase; Provisional
Probab=86.40 E-value=0.3 Score=44.48 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCccccccc----CCCceeecCc
Q 011235 336 VALFFGLSGTGKTTLSTD----HNRYLIGDDE 363 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~~----~~~~lI~DD~ 363 (490)
.+++.|++||||||++.. -+..+|..|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 489999999999998762 2444565444
No 388
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=86.37 E-value=0.39 Score=47.59 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~ 54 (257)
T PRK14246 34 PNNSIFGIMGPSGSGKSTLLK 54 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 389
>PRK13975 thymidylate kinase; Provisional
Probab=86.36 E-value=0.33 Score=45.19 Aligned_cols=18 Identities=39% Similarity=0.687 Sum_probs=16.3
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|+.|+||||++.
T Consensus 3 ~~I~ieG~~GsGKtT~~~ 20 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAK 20 (196)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999999877
No 390
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=86.21 E-value=0.38 Score=51.76 Aligned_cols=21 Identities=38% Similarity=0.703 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 27 ~~Ge~~~liG~nGsGKSTLl~ 47 (490)
T PRK10938 27 NAGDSWAFVGANGSGKSALAR 47 (490)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 391
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=86.15 E-value=0.3 Score=47.03 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=14.6
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
+++.|.||||||||+.
T Consensus 2 i~i~G~sgsGKTtla~ 17 (187)
T cd02024 2 VGISGVTNSGKTTLAK 17 (187)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999999887
No 392
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=86.04 E-value=0.38 Score=46.08 Aligned_cols=18 Identities=28% Similarity=0.649 Sum_probs=15.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
| .++|+|+||+|||||..
T Consensus 23 g-~~~i~G~nGsGKStll~ 40 (197)
T cd03278 23 G-LTAIVGPNGSGKSNIID 40 (197)
T ss_pred C-cEEEECCCCCCHHHHHH
Confidence 5 88999999999999654
No 393
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=86.04 E-value=0.37 Score=46.29 Aligned_cols=19 Identities=21% Similarity=0.503 Sum_probs=17.0
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|+|.+|||||+|+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999999876
No 394
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=86.02 E-value=0.39 Score=52.09 Aligned_cols=21 Identities=38% Similarity=0.658 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||||||||..
T Consensus 24 ~~Ge~~~iiG~nGsGKSTLl~ 44 (520)
T TIGR03269 24 EEGEVLGILGRSGAGKSVLMH 44 (520)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 395
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=85.96 E-value=0.32 Score=46.49 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=14.8
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++++|++|+||||++.
T Consensus 2 I~i~G~pGsGKsT~a~ 17 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAK 17 (210)
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999999877
No 396
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=85.93 E-value=0.38 Score=46.38 Aligned_cols=19 Identities=42% Similarity=0.609 Sum_probs=14.3
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
..+++|.||||+|||+|-.
T Consensus 3 ~~~vlL~Gps~SGKTaLf~ 21 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFS 21 (181)
T ss_dssp --EEEEE-STTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4579999999999999654
No 397
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=85.90 E-value=0.4 Score=48.95 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=18.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.|.|++|||||||..
T Consensus 31 ~~Gei~gllGpNGaGKSTLl~ 51 (306)
T PRK13537 31 QRGECFGLLGPNGAGKTTTLR 51 (306)
T ss_pred eCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999655
No 398
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=85.85 E-value=0.39 Score=41.49 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.9
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|.+|+|||||..
T Consensus 4 ~~i~~~G~~g~GKttl~~ 21 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLN 21 (168)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999999776
No 399
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=85.85 E-value=0.39 Score=44.82 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=17.0
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
++.++|.|+||+|||||..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~ 20 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAK 20 (183)
T ss_dssp SSEEEEESSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5789999999999999866
No 400
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=85.82 E-value=0.47 Score=52.00 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|+||+|||||..
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~ 373 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIK 373 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999776
No 401
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=85.80 E-value=0.39 Score=51.93 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 28 ~~Ge~~~l~G~NGsGKSTLl~ 48 (501)
T PRK10762 28 YPGRVMALVGENGAGKSTMMK 48 (501)
T ss_pred cCCeEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 402
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=85.78 E-value=0.41 Score=52.68 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|+.+++.|.||+|||||..
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~ 379 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLIN 379 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 403
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=85.76 E-value=0.35 Score=46.18 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=14.9
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++|+||||+..
T Consensus 3 lilI~GptGSGKTTll~ 19 (198)
T cd01131 3 LVLVTGPTGSGKSTTLA 19 (198)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999655
No 404
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.73 E-value=0.43 Score=47.37 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~ 52 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLR 52 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 405
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=85.72 E-value=0.36 Score=42.09 Aligned_cols=16 Identities=25% Similarity=0.667 Sum_probs=14.5
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|+|++|+|||||..
T Consensus 2 i~i~G~~~~GKTsli~ 17 (160)
T cd00876 2 VVVLGAGGVGKSAITI 17 (160)
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999999765
No 406
>PRK04040 adenylate kinase; Provisional
Probab=85.70 E-value=0.38 Score=45.97 Aligned_cols=18 Identities=39% Similarity=0.632 Sum_probs=16.0
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..+++.|.+|+||||++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~ 20 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLN 20 (188)
T ss_pred eEEEEEeCCCCCHHHHHH
Confidence 368999999999999877
No 407
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.69 E-value=0.43 Score=48.54 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 69 ~~Ge~~~IvG~nGsGKSTLl~ 89 (305)
T PRK14264 69 PEKSVTALIGPSGCGKSTFLR 89 (305)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 408
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=85.63 E-value=0.37 Score=42.56 Aligned_cols=16 Identities=44% Similarity=0.708 Sum_probs=14.5
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|+|++|+|||||..
T Consensus 2 i~i~G~~~~GKTsl~~ 17 (160)
T cd04156 2 VLLLGLDSAGKSTLLY 17 (160)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 6899999999999866
No 409
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=85.59 E-value=0.42 Score=51.77 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 29 ~~Ge~~~liG~nGsGKSTLl~ 49 (510)
T PRK09700 29 YPGEIHALLGENGAGKSTLMK 49 (510)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 410
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=85.56 E-value=0.41 Score=48.58 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~ 46 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMK 46 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHH
Confidence 568899999999999999655
No 411
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=85.45 E-value=0.44 Score=51.62 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|+||+|||||..
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ 366 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLN 366 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 412
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=85.36 E-value=0.43 Score=51.65 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|++|||||||..
T Consensus 287 ~~Ge~~~l~G~NGsGKSTLlk 307 (510)
T PRK09700 287 CRGEILGFAGLVGSGRTELMN 307 (510)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 413
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=85.34 E-value=0.42 Score=53.19 Aligned_cols=21 Identities=38% Similarity=0.699 Sum_probs=19.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|.+..+.|.||||||||+.
T Consensus 315 ~~GE~lglVGeSGsGKSTlar 335 (539)
T COG1123 315 REGETLGLVGESGSGKSTLAR 335 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 679999999999999999876
No 414
>PF13173 AAA_14: AAA domain
Probab=85.25 E-value=0.45 Score=41.92 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=17.7
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
++..+++.|+-|+|||||..
T Consensus 1 n~~~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLK 20 (128)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 46789999999999999876
No 415
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=85.20 E-value=0.46 Score=44.10 Aligned_cols=18 Identities=50% Similarity=0.687 Sum_probs=16.1
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|+.|||||||..
T Consensus 15 ~~ililGl~~sGKTtll~ 32 (175)
T PF00025_consen 15 IKILILGLDGSGKTTLLN 32 (175)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred EEEEEECCCccchHHHHH
Confidence 469999999999999776
No 416
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=85.18 E-value=0.45 Score=52.03 Aligned_cols=21 Identities=38% Similarity=0.751 Sum_probs=19.1
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|+.+++.|+||+|||||..
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ 367 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAM 367 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999766
No 417
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=85.16 E-value=0.39 Score=46.64 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=16.5
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...+.|.|+||+|||||+.
T Consensus 33 ~~iigi~G~~GsGKTTl~~ 51 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAE 51 (229)
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 3579999999999999876
No 418
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=85.15 E-value=0.42 Score=45.86 Aligned_cols=21 Identities=29% Similarity=0.681 Sum_probs=18.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|.+++|+|++|+|||+|+.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 457789999999999999876
No 419
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=85.14 E-value=0.36 Score=47.31 Aligned_cols=16 Identities=44% Similarity=0.781 Sum_probs=14.9
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|.|++|+||||++.
T Consensus 2 Ivl~G~pGSGKST~a~ 17 (249)
T TIGR03574 2 IILTGLPGVGKSTFSK 17 (249)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 6899999999999887
No 420
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=85.12 E-value=0.48 Score=47.90 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|+|++|+|||||..
T Consensus 28 ~~Ge~~~IvG~nGsGKSTLl~ 48 (275)
T cd03289 28 SPGQRVGLLGRTGSGKSTLLS 48 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 421
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=85.10 E-value=0.31 Score=49.71 Aligned_cols=131 Identities=28% Similarity=0.342 Sum_probs=79.9
Q ss_pred CEEEEEeCCCCCcccccc-------cCCCceee---cCceeecC-CCcc-ccCcceEEeecCCCCCCCcchhhcccccce
Q 011235 335 DVALFFGLSGTGKTTLST-------DHNRYLIG---DDEHCWGD-NGVS-NIEGGCYAKCIDLSREKEPDIWNAIKFGAV 402 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~-------~~~~~lI~---DD~~~wsd-~Gvf-n~EgGcYaK~~dLs~e~eP~I~~Ai~f~ai 402 (490)
..++++|--|||||+|.. +.+-+||- +|+..+.+ -+.. +..-=+-.=|||||=|..-.-|++++ ++
T Consensus 86 NnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LK--s~ 163 (287)
T COG2607 86 NNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALK--SA 163 (287)
T ss_pred cceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHH--HH
Confidence 359999999999999765 12333442 44433221 1222 23334556799999877777888876 44
Q ss_pred eee-eEEcCCCCeeecCCCCccccceEEEecccccCCCCCCCCCCccEEEE--EE-eecCCCCCCccccCHHHHHHH
Q 011235 403 LEN-VVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVIL--LA-CDAFGVLPPVSKLNLAQTMYH 475 (490)
Q Consensus 403 lEN-V~lD~~~~~vdf~d~s~T~NtRa~yPi~~i~N~~~~~~~g~P~~IIf--Lt-~DafgvLPPVskLt~eQA~y~ 475 (490)
+|. |.=-|+ +|.|. -|.|.|-.+|.++.+|.... -.-||...+- ++ .|+||.. ++.-...|.-|.
T Consensus 164 LeG~ve~rP~--NVl~Y---ATSNRRHLl~e~~~dn~~~~-~eih~~eaveEKlSlSDRFGLw--L~F~~~~Q~~YL 232 (287)
T COG2607 164 LEGGVEGRPA--NVLFY---ATSNRRHLLPEDMKDNEGST-GEIHPSEAVEEKLSLSDRFGLW--LSFYPCDQDEYL 232 (287)
T ss_pred hcCCcccCCC--eEEEE---EecCCcccccHhhhhCCCcc-cccChhHHHHHhhchhhhccee--ecccCCCHHHHH
Confidence 443 222231 33332 24799999999999997533 1246666554 33 7999987 555556666664
No 422
>PRK09087 hypothetical protein; Validated
Probab=85.10 E-value=0.4 Score=47.12 Aligned_cols=19 Identities=37% Similarity=0.609 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|+|+||+|||+|..
T Consensus 44 ~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4569999999999999877
No 423
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=85.07 E-value=0.47 Score=51.52 Aligned_cols=21 Identities=52% Similarity=0.770 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 308 ~~Ge~~~l~G~NGsGKSTLl~ 328 (520)
T TIGR03269 308 KEGEIFGIVGTSGAGKTTLSK 328 (520)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 424
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=85.05 E-value=0.36 Score=44.76 Aligned_cols=17 Identities=47% Similarity=0.626 Sum_probs=12.8
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
..++.|+.||||||+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp -EEEE-STTSSHHHHHH
T ss_pred CEEEECCCCCChHHHHH
Confidence 68999999999998444
No 425
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=85.04 E-value=0.42 Score=43.73 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=20.8
Q ss_pred CEEEEEeCCCCCccccccc----CCCceeecCce
Q 011235 335 DVALFFGLSGTGKTTLSTD----HNRYLIGDDEH 364 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~~----~~~~lI~DD~~ 364 (490)
..++|+|++||||||++.. .+..++.-|..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~ 36 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQW 36 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHH
Confidence 3588999999999998772 24445544443
No 426
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=85.02 E-value=0.37 Score=50.11 Aligned_cols=119 Identities=24% Similarity=0.375 Sum_probs=59.0
Q ss_pred CEEEEEeCCCCCccccccc--C--CCce-eecCceeecCCC-----ccccCcce---EEeecCCCCCCCcchhhcc-ccc
Q 011235 335 DVALFFGLSGTGKTTLSTD--H--NRYL-IGDDEHCWGDNG-----VSNIEGGC---YAKCIDLSREKEPDIWNAI-KFG 400 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~~--~--~~~l-I~DD~~~wsd~G-----vfn~EgGc---YaK~~dLs~e~eP~I~~Ai-~f~ 400 (490)
|-++|||+.|.|||||+.- . +-.+ +.. .-.+..-| ..|+|.|- -+-.-.|++.-|-.+|.|. -|.
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Emgvn~k~ts-Gp~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~ 131 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANELGVNLKITS-GPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFR 131 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHhcCCeEecc-cccccChhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhhee
Confidence 6799999999999999881 1 1111 110 11111112 12555542 2334446665566666665 242
Q ss_pred ceeeeeEEcCCCCeeecCCCCccccceEEEecccccCCCCCCCCCCccEEEEEE---eecCCCCCCccccCHHHHHH
Q 011235 401 AVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLA---CDAFGVLPPVSKLNLAQTMY 474 (490)
Q Consensus 401 ailENV~lD~~~~~vdf~d~s~T~NtRa~yPi~~i~N~~~~~~~g~P~~IIfLt---~DafgvLPPVskLt~eQA~y 474 (490)
. -+++... .|+|.+ .++.=|-. .+|. -..+=+|+ +|+||+.-.+...++++-..
T Consensus 132 l---DI~IG~g------------p~Arsv-~ldLppFT---LIGA-TTr~G~lt~PLrdRFGi~~rlefY~~~eL~~ 188 (332)
T COG2255 132 L---DIIIGKG------------PAARSI-RLDLPPFT---LIGA-TTRAGMLTNPLRDRFGIIQRLEFYTVEELEE 188 (332)
T ss_pred E---EEEEccC------------CccceE-eccCCCee---Eeee-ccccccccchhHHhcCCeeeeecCCHHHHHH
Confidence 2 3455442 466632 22221111 1111 11111233 89999977777777766544
No 427
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=85.02 E-value=0.41 Score=42.13 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 2 kv~v~G~~~~GKTtli~ 18 (164)
T smart00175 2 KIILIGDSGVGKSSLLS 18 (164)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999999766
No 428
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=85.02 E-value=0.46 Score=51.18 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 22 ~~Ge~~~liG~nGsGKSTLl~ 42 (491)
T PRK10982 22 RPHSIHALMGENGAGKSTLLK 42 (491)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 429
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=85.00 E-value=0.46 Score=46.24 Aligned_cols=39 Identities=31% Similarity=0.459 Sum_probs=25.5
Q ss_pred chhhhHHHHHHHHHHhcccCCeeeeccccccCCCCCEEEEEeCCCCCcccccc
Q 011235 300 YAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 300 Y~GEmKK~iltl~~~~l~~~G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~ 352 (490)
|..+..+.++..+.+.+.+. ...+++.|++|+|||||..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~--------------~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQR--------------EGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcC--------------CCEEEEEcCCCCCHHHHHH
Confidence 44455555666555544321 2347889999999999877
No 430
>PLN02165 adenylate isopentenyltransferase
Probab=84.97 E-value=0.55 Score=49.42 Aligned_cols=31 Identities=32% Similarity=0.599 Sum_probs=22.9
Q ss_pred CCCEEEEEeCCCCCccccccc----CCCceeecCc
Q 011235 333 DGDVALFFGLSGTGKTTLSTD----HNRYLIGDDE 363 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~~----~~~~lI~DD~ 363 (490)
.|..++|+|++|+|||||+.. .+..+|.-|.
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs 76 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDK 76 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCCh
Confidence 467899999999999998872 2445565443
No 431
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=84.96 E-value=0.47 Score=51.04 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|++|+|||||..
T Consensus 284 ~~Ge~~~i~G~NGsGKSTLl~ 304 (490)
T PRK10938 284 NPGEHWQIVGPNGAGKSTLLS 304 (490)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 432
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=84.94 E-value=0.43 Score=45.73 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=18.3
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.|.|++|||||+|+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~ 37 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCH 37 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 346789999999999999876
No 433
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=84.93 E-value=0.46 Score=51.77 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 33 ~~Ge~~~iiG~nGsGKSTLl~ 53 (529)
T PRK15134 33 EAGETLALVGESGSGKSVTAL 53 (529)
T ss_pred eCCCEEEEECCCCCcHHHHHH
Confidence 468899999999999999854
No 434
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=84.91 E-value=0.4 Score=44.89 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=16.2
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++++|++|+|||||..
T Consensus 6 ~kivv~G~~g~GKTtl~~ 23 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLN 23 (219)
T ss_pred EEEEEEcCCCccHHHHHH
Confidence 469999999999999877
No 435
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=84.90 E-value=0.5 Score=47.95 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 61 ~~Ge~~~liG~NGsGKSTLl~ 81 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLM 81 (282)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 436
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=84.87 E-value=0.42 Score=44.42 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=16.9
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..++|.|+.|+||||++.
T Consensus 3 g~~IvieG~~GsGKsT~~~ 21 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQAN 21 (195)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 5579999999999999877
No 437
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=84.87 E-value=0.46 Score=41.52 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 2 ki~i~G~~~~GKStli~ 18 (162)
T cd04123 2 KVVLLGEGRVGKTSLVL 18 (162)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999999765
No 438
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=84.87 E-value=0.42 Score=41.76 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++|+|||||..
T Consensus 3 ki~iiG~~~vGKTsl~~ 19 (162)
T cd04138 3 KLVVVGAGGVGKSALTI 19 (162)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999876
No 439
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=84.85 E-value=0.5 Score=44.99 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=18.4
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|.++.++|++|+|||+|+.
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHH
Confidence 347899999999999999776
No 440
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=84.81 E-value=0.49 Score=51.54 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|.||+|||||..
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~ 376 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVN 376 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 441
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=84.78 E-value=0.47 Score=51.17 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 25 ~~Ge~~~liG~nGsGKSTLl~ 45 (500)
T TIGR02633 25 RPGECVGLCGENGAGKSTLMK 45 (500)
T ss_pred eCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 442
>PRK07667 uridine kinase; Provisional
Probab=84.67 E-value=0.43 Score=45.31 Aligned_cols=18 Identities=39% Similarity=0.357 Sum_probs=15.9
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..+.+-|.+|+||||++.
T Consensus 18 ~iIgI~G~~gsGKStla~ 35 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVA 35 (193)
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 368999999999999877
No 443
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=84.66 E-value=0.49 Score=51.53 Aligned_cols=21 Identities=33% Similarity=0.533 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 310 ~~Ge~~~i~G~nGsGKSTLlk 330 (529)
T PRK15134 310 RPGETLGLVGESGSGKSTTGL 330 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 444
>PRK12288 GTPase RsgA; Reviewed
Probab=84.66 E-value=1.6 Score=45.88 Aligned_cols=19 Identities=42% Similarity=0.872 Sum_probs=17.2
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|.|.||+|||||.+
T Consensus 205 ~ki~~~vG~sgVGKSTLiN 223 (347)
T PRK12288 205 GRISIFVGQSGVGKSSLIN 223 (347)
T ss_pred hCCEEEECCCCCCHHHHHH
Confidence 4579999999999999888
No 445
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=84.65 E-value=0.46 Score=47.69 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=17.9
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|||++|+|||||..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr 34 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQ 34 (249)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47789999999999999876
No 446
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=84.65 E-value=0.43 Score=47.66 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=17.9
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|.++++.|.+|||||||+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~ 54 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVE 54 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46789999999999999877
No 447
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=84.59 E-value=0.46 Score=51.49 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~ 49 (506)
T PRK13549 29 RAGEIVSLCGENGAGKSTLMK 49 (506)
T ss_pred eCCeEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 448
>PRK13946 shikimate kinase; Provisional
Probab=84.59 E-value=0.46 Score=44.63 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=16.7
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|.|++||||||++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~ 28 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGR 28 (184)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999999877
No 449
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=84.58 E-value=0.39 Score=43.96 Aligned_cols=16 Identities=50% Similarity=0.669 Sum_probs=14.6
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
+++.|++|||||+|+.
T Consensus 2 ~li~G~~G~GKT~l~~ 17 (187)
T cd01124 2 TLLSGGPGTGKTTFAL 17 (187)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 6899999999999876
No 450
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=84.54 E-value=0.84 Score=47.74 Aligned_cols=21 Identities=38% Similarity=0.670 Sum_probs=19.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|.++.+.|.||||||||+.
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~ 49 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAK 49 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHH
Confidence 568999999999999999877
No 451
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=84.51 E-value=0.51 Score=51.93 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.1
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|.||+|||||..
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~ 385 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLAS 385 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999766
No 452
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=84.50 E-value=0.6 Score=45.85 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=16.6
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
+....+|.|+||+|||||..
T Consensus 24 ~~~~~~IvG~NGsGKStll~ 43 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILD 43 (251)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45678999999999999654
No 453
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=84.49 E-value=0.44 Score=52.36 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=17.7
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|.+++|+|++|+||||+.+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTA 274 (484)
T ss_pred CCcEEEEECCCCccHHHHHH
Confidence 46799999999999999766
No 454
>PRK14528 adenylate kinase; Provisional
Probab=84.42 E-value=0.46 Score=44.93 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+||||++.
T Consensus 3 ~i~i~G~pGsGKtt~a~ 19 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAK 19 (186)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999877
No 455
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=84.40 E-value=0.5 Score=51.17 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.++++|++|+|||||..
T Consensus 286 ~~Ge~~~l~G~NGsGKSTLlk 306 (506)
T PRK13549 286 RRGEILGIAGLVGAGRTELVQ 306 (506)
T ss_pred cCCcEEEEeCCCCCCHHHHHH
Confidence 568899999999999999766
No 456
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=84.39 E-value=0.49 Score=41.51 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=15.0
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++++|.+|+|||||..
T Consensus 2 ki~~~G~~~~GKTsl~~ 18 (164)
T cd04139 2 KVIVVGAGGVGKSALTL 18 (164)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999755
No 457
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=84.38 E-value=0.53 Score=51.29 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|++|+|||||..
T Consensus 25 ~~Ge~~~liG~NGsGKSTLl~ 45 (530)
T PRK15064 25 GGGNRYGLIGANGCGKSTFMK 45 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 458
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=84.37 E-value=0.45 Score=45.49 Aligned_cols=18 Identities=44% Similarity=0.470 Sum_probs=15.6
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
.++.|.|.||||||||..
T Consensus 7 ~ii~ivG~sgsGKTTLi~ 24 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLK 24 (173)
T ss_pred eEEEEECCCCChHHHHHH
Confidence 368999999999999755
No 459
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=84.33 E-value=0.54 Score=45.13 Aligned_cols=21 Identities=48% Similarity=0.700 Sum_probs=18.4
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|||||+|+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~ 37 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLAL 37 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHH
Confidence 347799999999999999876
No 460
>PRK04182 cytidylate kinase; Provisional
Probab=84.32 E-value=0.46 Score=43.12 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.+++.|.+||||||++.
T Consensus 2 ~I~i~G~~GsGKstia~ 18 (180)
T PRK04182 2 IITISGPPGSGKTTVAR 18 (180)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999877
No 461
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.31 E-value=0.31 Score=54.26 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=18.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+.|.|.||+||||+..
T Consensus 376 ~kGekVaIvG~nGsGKSTilr 396 (591)
T KOG0057|consen 376 PKGEKVAIVGSNGSGKSTILR 396 (591)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 457889999999999999655
No 462
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=84.28 E-value=0.54 Score=49.00 Aligned_cols=21 Identities=29% Similarity=0.581 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.|.|++|+|||||..
T Consensus 65 ~~Gei~gLlGpNGaGKSTLl~ 85 (340)
T PRK13536 65 ASGECFGLLGPNGAGKSTIAR 85 (340)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999655
No 463
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=84.26 E-value=0.55 Score=43.39 Aligned_cols=21 Identities=43% Similarity=0.713 Sum_probs=17.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|+|++|+||||++.
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~ 50 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLAL 50 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHH
Confidence 357799999999999999766
No 464
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=84.24 E-value=0.47 Score=51.11 Aligned_cols=42 Identities=29% Similarity=0.386 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhcccCCeeeeccccccCCCCCEEEEEeCCCCCcccccc
Q 011235 304 MKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 304 mKK~iltl~~~~l~~~G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~ 352 (490)
.++.+...+.-.++..+.. ....|.+++|.|++|+||||+++
T Consensus 198 ~~~~~~~~L~~~l~~~~~~-------~~~~~~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 198 AWRYLLELLANMIPVRVED-------ILKQGGVVALVGPTGVGKTTTLA 239 (424)
T ss_pred HHHHHHHHHHHHhCccccc-------cccCCcEEEEECCCCCCHHHHHH
Confidence 5566666654444432221 12236799999999999999666
No 465
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=84.17 E-value=0.52 Score=45.23 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=18.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|||||||+.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~ 38 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCL 38 (229)
T ss_pred cCCeEEEEECCCCCChHHHHH
Confidence 347789999999999999765
No 466
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=84.09 E-value=0.52 Score=41.43 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 2 ki~~vG~~~vGKTsli~ 18 (168)
T cd04119 2 KVISMGNSGVGKSCIIK 18 (168)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999999876
No 467
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=84.04 E-value=0.48 Score=40.63 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++++|++|+|||||..
T Consensus 2 ~i~~~G~~~~GKStl~~ 18 (159)
T cd00154 2 KIVLIGDSGVGKTSLLL 18 (159)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999999766
No 468
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=84.02 E-value=0.53 Score=43.05 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
+++|.|.+++|||||..
T Consensus 2 vv~VvG~~~sGKTTl~~ 18 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIR 18 (140)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999876
No 469
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=83.96 E-value=0.56 Score=44.54 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=17.3
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|+.+++.|++|+|||||..
T Consensus 28 ~~~~~~l~G~Ng~GKStll~ 47 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLR 47 (202)
T ss_pred CCeEEEEECCCCCccHHHHH
Confidence 35899999999999999654
No 470
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=83.95 E-value=0.54 Score=50.86 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|++|+|||||..
T Consensus 276 ~~Ge~~~liG~NGsGKSTLl~ 296 (501)
T PRK10762 276 RKGEILGVSGLMGAGRTELMK 296 (501)
T ss_pred cCCcEEEEecCCCCCHHHHHH
Confidence 568899999999999999765
No 471
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=83.94 E-value=0.56 Score=51.08 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLl~ 363 (530)
T PRK15064 343 EAGERLAIIGENGVGKTTLLR 363 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 472
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=83.92 E-value=0.59 Score=46.63 Aligned_cols=21 Identities=38% Similarity=0.718 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|.+|+|||||..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTL~~ 48 (235)
T COG1122 28 EKGERVLLIGPNGSGKSTLLK 48 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 473
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=83.86 E-value=0.56 Score=51.01 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 35 ~~Ge~~~liG~NGsGKSTLl~ 55 (510)
T PRK15439 35 HAGEVHALLGGNGAGKSTLMK 55 (510)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 474
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=83.86 E-value=0.44 Score=48.75 Aligned_cols=18 Identities=50% Similarity=0.820 Sum_probs=16.3
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|++|||||||+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 468999999999999877
No 475
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=83.81 E-value=0.57 Score=51.68 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|+||+|||||..
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ 384 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQ 384 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 476
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=83.77 E-value=0.5 Score=49.05 Aligned_cols=20 Identities=40% Similarity=0.463 Sum_probs=17.8
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+.+++|.|++|+||||+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIG 132 (318)
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 46789999999999999776
No 477
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=83.76 E-value=0.51 Score=42.59 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.+++.|.+|+||||++.
T Consensus 2 iI~i~G~~GSGKstia~ 18 (171)
T TIGR02173 2 IITISGPPGSGKTTVAK 18 (171)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999877
No 478
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.71 E-value=0.6 Score=48.40 Aligned_cols=21 Identities=43% Similarity=0.646 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|++|+|||||..
T Consensus 106 ~~Ge~v~IvG~~GsGKSTLl~ 126 (329)
T PRK14257 106 KRNKVTAFIGPSGCGKSTFLR 126 (329)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 479
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=83.65 E-value=0.36 Score=45.87 Aligned_cols=26 Identities=42% Similarity=0.710 Sum_probs=17.9
Q ss_pred EeCCCCCcccccc----cCCCcee-ecCcee
Q 011235 340 FGLSGTGKTTLST----DHNRYLI-GDDEHC 365 (490)
Q Consensus 340 fGlSGtGKTTLs~----~~~~~lI-~DD~~~ 365 (490)
||.|||||||... .-+-..| +||.|-
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp 31 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHP 31 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCC
Confidence 6899999999665 2233444 787764
No 480
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=83.64 E-value=0.56 Score=42.55 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=16.0
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|++|+|||||..
T Consensus 2 ~kv~l~G~~g~GKTtl~~ 19 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTV 19 (180)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999999876
No 481
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=83.60 E-value=0.59 Score=46.29 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=17.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|.=+.+.|+||+|||||..
T Consensus 26 ~~Gef~fl~GpSGAGKSTllk 46 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLK 46 (223)
T ss_pred cCceEEEEECCCCCCHHHHHH
Confidence 346678999999999999654
No 482
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=83.59 E-value=0.59 Score=51.04 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|+||+|||||..
T Consensus 342 ~~G~~~~ivG~sGsGKSTL~~ 362 (544)
T TIGR01842 342 QAGEALAIIGPSGSGKSTLAR 362 (544)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 483
>PRK15453 phosphoribulokinase; Provisional
Probab=83.53 E-value=0.6 Score=48.31 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.6
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
.-.+++.|.|||||||++.
T Consensus 5 ~piI~ItG~SGsGKTTva~ 23 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKR 23 (290)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4569999999999999876
No 484
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=83.52 E-value=0.52 Score=41.81 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++|+|||||..
T Consensus 2 ki~v~G~~~~GKTsli~ 18 (164)
T smart00173 2 KLVVLGSGGVGKSALTI 18 (164)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999865
No 485
>PLN02772 guanylate kinase
Probab=83.47 E-value=1.5 Score=47.34 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=31.5
Q ss_pred cccchhhhHHHHHHHHHHhcccCCeeeeccccccCCCCCEEEEEeCCCCCcccccc
Q 011235 297 GTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 297 Gt~Y~GEmKK~iltl~~~~l~~~G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~ 352 (490)
+|.|-.+-||. ..+-+..++=+ +.+...+.++|.|+||+||+||..
T Consensus 108 ~t~~~~~~~~~---------~~~eV~~~~~~-~~~~~~k~iVlsGPSGvGKsTL~~ 153 (398)
T PLN02772 108 DTPFVREQKKL---------LGTEVVAWSKG-VRGNAEKPIVISGPSGVGKGTLIS 153 (398)
T ss_pred CCHHHHhhccc---------ccceeeecccC-CCCCCCcEEEEECCCCCCHHHHHH
Confidence 57777666662 23445555433 244556789999999999999766
No 486
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=83.45 E-value=0.6 Score=52.66 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|+.+++.|.||+|||||..
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlk 518 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAK 518 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 458899999999999999766
No 487
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=83.43 E-value=0.57 Score=50.56 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.++++|++|+|||||..
T Consensus 284 ~~Ge~~~l~G~NGsGKSTLl~ 304 (500)
T TIGR02633 284 RRGEILGVAGLVGAGRTELVQ 304 (500)
T ss_pred eCCcEEEEeCCCCCCHHHHHH
Confidence 568899999999999999765
No 488
>PRK08181 transposase; Validated
Probab=83.43 E-value=0.56 Score=47.66 Aligned_cols=20 Identities=40% Similarity=0.722 Sum_probs=17.2
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|+|++|||||.|+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAA 124 (269)
T ss_pred cCceEEEEecCCCcHHHHHH
Confidence 34579999999999999877
No 489
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=83.41 E-value=0.57 Score=41.75 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.8
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++++|++|+|||||..
T Consensus 8 ~~v~v~G~~~~GKSsli~ 25 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVR 25 (169)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999765
No 490
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=83.41 E-value=0.59 Score=51.35 Aligned_cols=21 Identities=38% Similarity=0.760 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..++++|+||+|||||..
T Consensus 366 ~~G~~~aivG~sGsGKSTl~~ 386 (555)
T TIGR01194 366 AQGDIVFIVGENGCGKSTLAK 386 (555)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 491
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=83.33 E-value=0.56 Score=52.42 Aligned_cols=22 Identities=45% Similarity=0.750 Sum_probs=19.0
Q ss_pred CCCCCEEEEEeCCCCCcccccc
Q 011235 331 GKDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 331 ~~~g~~~lffGlSGtGKTTLs~ 352 (490)
.+.|.+++|.|+|||||||++.
T Consensus 389 ~~~g~~Ivl~Gl~GSGKSTia~ 410 (568)
T PRK05537 389 HKQGFTVFFTGLSGAGKSTIAK 410 (568)
T ss_pred cCCCeEEEEECCCCChHHHHHH
Confidence 3557789999999999999877
No 492
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=83.31 E-value=0.41 Score=43.58 Aligned_cols=16 Identities=44% Similarity=0.464 Sum_probs=13.0
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|.|..|||||||+.
T Consensus 2 I~i~G~~stGKTTL~~ 17 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIE 17 (163)
T ss_dssp EEEE--TTSHHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999999887
No 493
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=83.23 E-value=0.58 Score=42.94 Aligned_cols=19 Identities=47% Similarity=0.665 Sum_probs=16.5
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|.|++|+|||||..
T Consensus 19 ~~ki~ilG~~~~GKStLi~ 37 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLH 37 (190)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568999999999999876
No 494
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=83.21 E-value=0.6 Score=50.34 Aligned_cols=21 Identities=24% Similarity=0.465 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+.+.|++|+|||||..
T Consensus 272 ~~Ge~~~l~G~nGsGKSTLl~ 292 (491)
T PRK10982 272 HKGEILGIAGLVGAKRTDIVE 292 (491)
T ss_pred eCCcEEEEecCCCCCHHHHHH
Confidence 568899999999999999755
No 495
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=83.21 E-value=0.62 Score=51.27 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|+||+|||||..
T Consensus 339 ~~G~~~~ivG~sGsGKSTLl~ 359 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLS 359 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 496
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=83.15 E-value=0.6 Score=50.52 Aligned_cols=21 Identities=33% Similarity=0.789 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|++|||||||..
T Consensus 277 ~~Ge~~~iiG~NGsGKSTLlk 297 (501)
T PRK11288 277 RAGEIVGLFGLVGAGRSELMK 297 (501)
T ss_pred eCCcEEEEEcCCCCCHHHHHH
Confidence 568899999999999999765
No 497
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=83.14 E-value=0.55 Score=42.22 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++++|++|+|||||..
T Consensus 2 ki~vvG~~~vGKTsli~ 18 (161)
T cd04124 2 KIILLGDSAVGKSKLVE 18 (161)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999876
No 498
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=83.14 E-value=0.63 Score=52.14 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|||||||..
T Consensus 27 ~~Ge~v~LvG~NGsGKSTLLr 47 (635)
T PRK11147 27 EDNERVCLVGRNGAGKSTLMK 47 (635)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 499
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=83.10 E-value=0.65 Score=51.13 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|++|+|||||..
T Consensus 31 ~~Ge~~~iiG~NGsGKSTLlk 51 (556)
T PRK11819 31 FPGAKIGVLGLNGAGKSTLLR 51 (556)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 500
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=83.07 E-value=0.54 Score=41.85 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 2 ~v~ivG~~~~GKStl~~ 18 (170)
T cd01898 2 DVGLVGLPNAGKSTLLS 18 (170)
T ss_pred CeEEECCCCCCHHHHHH
Confidence 37899999999999877
Done!