Query 011235
Match_columns 490
No_of_seqs 167 out of 715
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 03:57:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ii2_A Phosphoenolpyruvate car 100.0 2E-109 8E-114 883.7 33.2 348 142-489 2-368 (524)
2 1ytm_A Phosphoenolpyruvate car 100.0 1E-107 4E-112 871.0 32.8 357 129-489 2-390 (532)
3 2olr_A Phosphoenolpyruvate car 100.0 3E-107 9E-112 867.7 34.4 352 131-489 9-396 (540)
4 1j3b_A ATP-dependent phosphoen 100.0 3.5E-99 1E-103 805.7 33.4 355 133-489 3-381 (529)
5 2faf_A Phosphoenolpyruvate car 99.9 3.2E-23 1.1E-27 221.2 27.0 330 140-484 24-448 (608)
6 2zci_A Phosphoenolpyruvate car 99.9 5.6E-23 1.9E-27 219.6 24.9 335 140-482 32-444 (610)
7 3moe_A Phosphoenolpyruvate car 99.9 3.5E-20 1.2E-24 198.1 23.0 326 140-474 41-457 (624)
8 3tqf_A HPR(Ser) kinase; transf 98.0 1.5E-06 5E-11 82.0 2.5 46 321-367 4-52 (181)
9 1knx_A Probable HPR(Ser) kinas 97.9 5.1E-06 1.7E-10 84.0 3.1 47 320-367 134-183 (312)
10 1ko7_A HPR kinase/phosphatase; 97.8 8.5E-06 2.9E-10 82.4 3.9 49 318-367 129-180 (314)
11 2qmh_A HPR kinase/phosphorylas 97.6 2.4E-05 8.3E-10 75.0 2.4 49 318-367 19-70 (205)
12 4gp7_A Metallophosphoesterase; 94.7 0.008 2.7E-07 53.8 1.2 21 332-352 7-27 (171)
13 3tr0_A Guanylate kinase, GMP k 94.7 0.0098 3.4E-07 53.4 1.8 20 333-352 6-25 (205)
14 1kgd_A CASK, peripheral plasma 94.7 0.0092 3.2E-07 53.6 1.5 20 333-352 4-23 (180)
15 1zp6_A Hypothetical protein AT 94.6 0.0098 3.3E-07 52.9 1.5 21 332-352 7-27 (191)
16 1qhx_A CPT, protein (chloramph 94.4 0.012 4E-07 51.8 1.5 19 334-352 3-21 (178)
17 3uie_A Adenylyl-sulfate kinase 94.4 0.011 3.9E-07 53.7 1.5 21 332-352 23-43 (200)
18 1znw_A Guanylate kinase, GMP k 94.4 0.014 4.7E-07 53.6 1.9 21 332-352 18-38 (207)
19 1z6g_A Guanylate kinase; struc 94.3 0.012 4.1E-07 54.9 1.3 21 332-352 21-41 (218)
20 2j41_A Guanylate kinase; GMP, 94.2 0.016 5.5E-07 51.9 1.8 20 333-352 5-24 (207)
21 3tau_A Guanylate kinase, GMP k 94.1 0.016 5.6E-07 53.3 1.8 21 332-352 6-26 (208)
22 3a00_A Guanylate kinase, GMP k 94.1 0.014 4.7E-07 52.7 1.2 19 334-352 1-19 (186)
23 2qor_A Guanylate kinase; phosp 94.1 0.013 4.6E-07 53.4 1.1 20 333-352 11-30 (204)
24 1kag_A SKI, shikimate kinase I 94.0 0.013 4.6E-07 51.2 0.9 19 334-352 4-22 (173)
25 3c8u_A Fructokinase; YP_612366 93.9 0.017 5.7E-07 53.0 1.4 21 332-352 20-40 (208)
26 1lvg_A Guanylate kinase, GMP k 93.9 0.014 4.9E-07 53.5 1.0 20 333-352 3-22 (198)
27 1s96_A Guanylate kinase, GMP k 93.9 0.019 6.6E-07 54.2 1.8 21 332-352 14-34 (219)
28 3ec2_A DNA replication protein 93.7 0.017 5.9E-07 51.3 1.0 19 334-352 38-56 (180)
29 4eun_A Thermoresistant glucoki 93.6 0.022 7.5E-07 51.8 1.6 20 333-352 28-47 (200)
30 1knq_A Gluconate kinase; ALFA/ 93.5 0.021 7.1E-07 50.3 1.3 20 333-352 7-26 (175)
31 3lnc_A Guanylate kinase, GMP k 93.5 0.021 7.3E-07 53.0 1.4 21 332-352 25-45 (231)
32 3asz_A Uridine kinase; cytidin 93.4 0.024 8.1E-07 51.5 1.5 20 333-352 5-24 (211)
33 2bdt_A BH3686; alpha-beta prot 93.3 0.019 6.5E-07 51.3 0.7 19 334-352 2-20 (189)
34 3tif_A Uncharacterized ABC tra 93.3 0.029 1E-06 53.4 2.0 21 332-352 29-49 (235)
35 3kb2_A SPBC2 prophage-derived 93.2 0.026 8.8E-07 48.9 1.3 17 336-352 3-19 (173)
36 2ehv_A Hypothetical protein PH 93.2 0.025 8.7E-07 51.9 1.4 21 332-352 28-48 (251)
37 3lw7_A Adenylate kinase relate 93.1 0.026 8.9E-07 48.3 1.2 17 336-352 3-19 (179)
38 2pcj_A ABC transporter, lipopr 93.1 0.03 1E-06 52.9 1.7 21 332-352 28-48 (224)
39 1htw_A HI0065; nucleotide-bind 93.1 0.03 1E-06 50.5 1.6 21 332-352 31-51 (158)
40 3vaa_A Shikimate kinase, SK; s 93.1 0.03 1E-06 50.8 1.6 21 332-352 23-43 (199)
41 4a74_A DNA repair and recombin 93.0 0.028 9.6E-07 51.0 1.3 21 332-352 23-43 (231)
42 1kht_A Adenylate kinase; phosp 92.8 0.033 1.1E-06 49.0 1.5 19 334-352 3-21 (192)
43 1b0u_A Histidine permease; ABC 92.7 0.039 1.3E-06 53.5 1.9 21 332-352 30-50 (262)
44 2rhm_A Putative kinase; P-loop 92.6 0.037 1.3E-06 48.9 1.6 19 334-352 5-23 (193)
45 1ly1_A Polynucleotide kinase; 92.6 0.033 1.1E-06 48.5 1.3 17 336-352 4-20 (181)
46 3ney_A 55 kDa erythrocyte memb 92.6 0.041 1.4E-06 51.8 1.9 21 332-352 17-37 (197)
47 3trf_A Shikimate kinase, SK; a 92.6 0.037 1.3E-06 49.0 1.5 19 334-352 5-23 (185)
48 2kjq_A DNAA-related protein; s 92.6 0.042 1.5E-06 48.6 1.9 20 333-352 35-54 (149)
49 2cbz_A Multidrug resistance-as 92.4 0.045 1.5E-06 52.2 2.0 21 332-352 29-49 (237)
50 2pez_A Bifunctional 3'-phospho 92.4 0.038 1.3E-06 49.0 1.3 20 333-352 4-23 (179)
51 1nks_A Adenylate kinase; therm 92.4 0.036 1.2E-06 48.7 1.1 17 336-352 3-19 (194)
52 3b85_A Phosphate starvation-in 92.3 0.049 1.7E-06 51.1 2.0 21 332-352 20-40 (208)
53 3t61_A Gluconokinase; PSI-biol 92.2 0.037 1.3E-06 50.0 1.0 19 334-352 18-36 (202)
54 3iij_A Coilin-interacting nucl 92.2 0.037 1.3E-06 49.0 1.0 20 333-352 10-29 (180)
55 1g6h_A High-affinity branched- 92.2 0.045 1.5E-06 52.7 1.6 21 332-352 31-51 (257)
56 2olj_A Amino acid ABC transpor 92.1 0.051 1.8E-06 52.9 1.9 21 332-352 48-68 (263)
57 1cke_A CK, MSSA, protein (cyti 92.1 0.046 1.6E-06 49.9 1.5 19 334-352 5-23 (227)
58 3fvq_A Fe(3+) IONS import ATP- 92.0 0.054 1.8E-06 55.5 2.1 21 332-352 28-48 (359)
59 2ff7_A Alpha-hemolysin translo 92.0 0.047 1.6E-06 52.4 1.6 21 332-352 33-53 (247)
60 2pze_A Cystic fibrosis transme 92.0 0.047 1.6E-06 51.7 1.6 21 332-352 32-52 (229)
61 1ji0_A ABC transporter; ATP bi 92.0 0.048 1.6E-06 52.0 1.6 21 332-352 30-50 (240)
62 4g1u_C Hemin import ATP-bindin 92.0 0.047 1.6E-06 53.1 1.5 21 332-352 35-55 (266)
63 2d2e_A SUFC protein; ABC-ATPas 92.0 0.049 1.7E-06 52.2 1.6 21 332-352 27-47 (250)
64 2qz4_A Paraplegin; AAA+, SPG7, 92.0 0.1 3.6E-06 48.3 3.8 44 303-352 13-57 (262)
65 3gfo_A Cobalt import ATP-bindi 91.9 0.049 1.7E-06 53.5 1.6 21 332-352 32-52 (275)
66 1mv5_A LMRA, multidrug resista 91.9 0.049 1.7E-06 51.9 1.6 21 332-352 26-46 (243)
67 2ixe_A Antigen peptide transpo 91.9 0.057 1.9E-06 52.6 2.0 21 332-352 43-63 (271)
68 1vpl_A ABC transporter, ATP-bi 91.8 0.058 2E-06 52.3 1.9 21 332-352 39-59 (256)
69 2yz2_A Putative ABC transporte 91.8 0.059 2E-06 52.2 2.0 21 332-352 31-51 (266)
70 2ghi_A Transport protein; mult 91.8 0.059 2E-06 52.1 2.0 21 332-352 44-64 (260)
71 2zu0_C Probable ATP-dependent 91.7 0.06 2E-06 52.3 1.9 21 332-352 44-64 (267)
72 2wwf_A Thymidilate kinase, put 91.7 0.061 2.1E-06 48.4 1.8 20 333-352 9-28 (212)
73 1gvn_B Zeta; postsegregational 91.6 0.054 1.8E-06 53.0 1.5 20 333-352 32-51 (287)
74 2cdn_A Adenylate kinase; phosp 91.6 0.066 2.2E-06 48.3 1.9 20 333-352 19-38 (201)
75 2bbw_A Adenylate kinase 4, AK4 91.6 0.059 2E-06 50.5 1.7 19 334-352 27-45 (246)
76 1sgw_A Putative ABC transporte 91.5 0.048 1.6E-06 51.6 1.0 21 332-352 33-53 (214)
77 1rj9_A FTSY, signal recognitio 91.5 0.057 1.9E-06 53.7 1.5 20 333-352 101-120 (304)
78 2yyz_A Sugar ABC transporter, 91.4 0.066 2.3E-06 54.7 2.0 21 332-352 27-47 (359)
79 2ihy_A ABC transporter, ATP-bi 91.4 0.06 2E-06 52.8 1.6 21 332-352 45-65 (279)
80 2w0m_A SSO2452; RECA, SSPF, un 91.4 0.061 2.1E-06 48.4 1.5 20 333-352 22-41 (235)
81 3rlf_A Maltose/maltodextrin im 91.4 0.066 2.3E-06 55.3 1.9 21 332-352 27-47 (381)
82 3cm0_A Adenylate kinase; ATP-b 91.4 0.045 1.5E-06 48.4 0.6 19 334-352 4-22 (186)
83 2qt1_A Nicotinamide riboside k 91.3 0.069 2.4E-06 48.4 1.8 21 332-352 19-39 (207)
84 2nq2_C Hypothetical ABC transp 91.3 0.063 2.2E-06 51.8 1.6 21 332-352 29-49 (253)
85 3aez_A Pantothenate kinase; tr 91.3 0.058 2E-06 53.7 1.4 21 332-352 88-108 (312)
86 1jbk_A CLPB protein; beta barr 91.3 0.069 2.4E-06 45.8 1.7 19 334-352 43-61 (195)
87 2jeo_A Uridine-cytidine kinase 91.3 0.06 2E-06 50.6 1.4 21 332-352 23-43 (245)
88 1lv7_A FTSH; alpha/beta domain 91.3 0.097 3.3E-06 49.0 2.8 18 335-352 46-63 (257)
89 1nn5_A Similar to deoxythymidy 91.3 0.074 2.5E-06 47.8 1.9 20 333-352 8-27 (215)
90 2it1_A 362AA long hypothetical 91.3 0.07 2.4E-06 54.6 1.9 21 332-352 27-47 (362)
91 2plr_A DTMP kinase, probable t 91.2 0.057 2E-06 48.2 1.1 19 334-352 4-22 (213)
92 1v43_A Sugar-binding transport 91.2 0.071 2.4E-06 54.8 1.9 21 332-352 35-55 (372)
93 3bos_A Putative DNA replicatio 91.2 0.07 2.4E-06 48.1 1.7 19 334-352 52-70 (242)
94 2eyu_A Twitching motility prot 91.1 0.065 2.2E-06 51.9 1.5 21 332-352 23-43 (261)
95 2qi9_C Vitamin B12 import ATP- 91.1 0.07 2.4E-06 51.5 1.7 21 332-352 24-44 (249)
96 2yvu_A Probable adenylyl-sulfa 91.1 0.067 2.3E-06 47.7 1.4 20 333-352 12-31 (186)
97 2cvh_A DNA repair and recombin 91.0 0.077 2.6E-06 47.8 1.8 21 332-352 18-38 (220)
98 1z47_A CYSA, putative ABC-tran 91.0 0.068 2.3E-06 54.6 1.6 21 332-352 39-59 (355)
99 2vli_A Antibiotic resistance p 91.0 0.068 2.3E-06 47.0 1.4 19 334-352 5-23 (183)
100 2jaq_A Deoxyguanosine kinase; 91.0 0.059 2E-06 47.8 1.0 17 336-352 2-18 (205)
101 1ex7_A Guanylate kinase; subst 91.0 0.059 2E-06 50.1 1.0 18 335-352 2-19 (186)
102 1g29_1 MALK, maltose transport 90.9 0.07 2.4E-06 54.7 1.6 21 332-352 27-47 (372)
103 1rz3_A Hypothetical protein rb 90.9 0.072 2.5E-06 48.6 1.5 20 333-352 21-40 (201)
104 1n0w_A DNA repair protein RAD5 90.8 0.074 2.5E-06 48.6 1.5 21 332-352 22-42 (243)
105 1ye8_A Protein THEP1, hypothet 90.8 0.068 2.3E-06 48.7 1.2 17 336-352 2-18 (178)
106 2v54_A DTMP kinase, thymidylat 90.8 0.076 2.6E-06 47.5 1.5 19 334-352 4-22 (204)
107 2i3b_A HCR-ntpase, human cance 90.8 0.065 2.2E-06 49.5 1.1 19 334-352 1-19 (189)
108 2ze6_A Isopentenyl transferase 90.8 0.068 2.3E-06 51.1 1.3 29 336-364 3-36 (253)
109 2p65_A Hypothetical protein PF 90.8 0.068 2.3E-06 46.1 1.1 19 334-352 43-61 (187)
110 2c95_A Adenylate kinase 1; tra 90.7 0.088 3E-06 46.6 1.8 20 333-352 8-27 (196)
111 2bbs_A Cystic fibrosis transme 90.7 0.09 3.1E-06 51.9 2.1 21 332-352 62-82 (290)
112 2v9p_A Replication protein E1; 90.7 0.089 3E-06 52.7 2.1 21 332-352 124-144 (305)
113 3d31_A Sulfate/molybdate ABC t 90.7 0.064 2.2E-06 54.6 1.0 21 332-352 24-44 (348)
114 2pjz_A Hypothetical protein ST 90.6 0.086 3E-06 51.3 1.8 19 334-352 30-48 (263)
115 4e22_A Cytidylate kinase; P-lo 90.5 0.086 2.9E-06 50.1 1.7 21 332-352 25-45 (252)
116 1y63_A LMAJ004144AAA protein; 90.4 0.092 3.1E-06 47.1 1.7 20 333-352 9-28 (184)
117 3fb4_A Adenylate kinase; psych 90.4 0.073 2.5E-06 48.4 1.0 17 336-352 2-18 (216)
118 1ixz_A ATP-dependent metallopr 90.3 0.073 2.5E-06 49.8 1.0 16 337-352 52-67 (254)
119 2vp4_A Deoxynucleoside kinase; 90.3 0.084 2.9E-06 49.3 1.4 21 332-352 18-38 (230)
120 1via_A Shikimate kinase; struc 90.3 0.075 2.6E-06 46.9 1.0 17 336-352 6-22 (175)
121 3b9q_A Chloroplast SRP recepto 90.3 0.076 2.6E-06 52.6 1.2 47 303-352 71-118 (302)
122 1oxx_K GLCV, glucose, ABC tran 90.3 0.06 2.1E-06 54.8 0.4 21 332-352 29-49 (353)
123 2p5t_B PEZT; postsegregational 90.3 0.072 2.5E-06 50.5 0.9 20 333-352 31-50 (253)
124 1gtv_A TMK, thymidylate kinase 90.3 0.045 1.5E-06 49.4 -0.5 17 336-352 2-18 (214)
125 3tui_C Methionine import ATP-b 90.2 0.098 3.3E-06 53.8 1.9 21 332-352 52-72 (366)
126 1tev_A UMP-CMP kinase; ploop, 90.2 0.081 2.8E-06 46.5 1.1 19 334-352 3-21 (196)
127 2z0h_A DTMP kinase, thymidylat 90.2 0.078 2.7E-06 47.0 1.0 17 336-352 2-18 (197)
128 3b9p_A CG5977-PA, isoform A; A 90.1 0.11 3.6E-06 49.6 2.0 20 333-352 53-72 (297)
129 2w58_A DNAI, primosome compone 90.1 0.095 3.2E-06 47.1 1.5 18 335-352 55-72 (202)
130 3dl0_A Adenylate kinase; phosp 90.1 0.08 2.7E-06 48.2 1.0 17 336-352 2-18 (216)
131 1m7g_A Adenylylsulfate kinase; 90.1 0.091 3.1E-06 48.1 1.4 21 332-352 23-43 (211)
132 2bwj_A Adenylate kinase 5; pho 90.0 0.1 3.4E-06 46.4 1.6 19 334-352 12-30 (199)
133 3cf0_A Transitional endoplasmi 90.0 0.098 3.3E-06 50.9 1.6 20 333-352 48-67 (301)
134 1sq5_A Pantothenate kinase; P- 89.9 0.099 3.4E-06 51.4 1.6 21 332-352 78-98 (308)
135 1e6c_A Shikimate kinase; phosp 89.8 0.085 2.9E-06 45.9 1.0 17 336-352 4-20 (173)
136 2pbr_A DTMP kinase, thymidylat 89.8 0.086 3E-06 46.4 1.0 17 336-352 2-18 (195)
137 1jjv_A Dephospho-COA kinase; P 89.8 0.093 3.2E-06 47.4 1.3 17 336-352 4-20 (206)
138 3nh6_A ATP-binding cassette SU 89.8 0.083 2.8E-06 52.8 1.0 21 332-352 78-98 (306)
139 3syl_A Protein CBBX; photosynt 89.8 0.13 4.4E-06 49.1 2.2 21 332-352 65-85 (309)
140 1pui_A ENGB, probable GTP-bind 89.8 0.11 3.8E-06 46.3 1.7 21 332-352 24-44 (210)
141 3gd7_A Fusion complex of cysti 89.7 0.12 4.1E-06 53.4 2.1 21 332-352 45-65 (390)
142 2onk_A Molybdate/tungstate ABC 89.7 0.11 3.9E-06 49.7 1.8 18 335-352 25-42 (240)
143 3h4m_A Proteasome-activating n 89.7 0.11 3.6E-06 49.2 1.6 20 333-352 50-69 (285)
144 2lkc_A Translation initiation 89.7 0.14 4.7E-06 44.0 2.2 24 329-352 3-26 (178)
145 1nlf_A Regulatory protein REPA 89.4 0.12 4E-06 49.5 1.7 21 332-352 28-48 (279)
146 2pt5_A Shikimate kinase, SK; a 89.4 0.11 3.6E-06 45.2 1.2 17 336-352 2-18 (168)
147 3e70_C DPA, signal recognition 89.3 0.099 3.4E-06 52.6 1.1 21 332-352 127-147 (328)
148 2iyv_A Shikimate kinase, SK; t 89.3 0.1 3.5E-06 46.2 1.0 17 336-352 4-20 (184)
149 3n70_A Transport activator; si 89.2 0.11 3.8E-06 44.9 1.2 20 333-352 23-42 (145)
150 2if2_A Dephospho-COA kinase; a 89.2 0.12 4E-06 46.5 1.4 17 336-352 3-19 (204)
151 1zak_A Adenylate kinase; ATP:A 89.1 0.11 3.8E-06 47.7 1.2 18 335-352 6-23 (222)
152 2x8a_A Nuclear valosin-contain 89.1 0.1 3.5E-06 50.6 1.0 16 337-352 47-62 (274)
153 1aky_A Adenylate kinase; ATP:A 89.1 0.13 4.5E-06 47.1 1.7 20 333-352 3-22 (220)
154 1iy2_A ATP-dependent metallopr 88.9 0.11 3.7E-06 49.6 1.0 16 337-352 76-91 (278)
155 2dr3_A UPF0273 protein PH0284; 88.9 0.14 4.6E-06 46.9 1.6 21 332-352 21-41 (247)
156 1qf9_A UMP/CMP kinase, protein 88.9 0.12 4.1E-06 45.3 1.2 18 335-352 7-24 (194)
157 1uf9_A TT1252 protein; P-loop, 88.8 0.14 4.6E-06 45.6 1.5 19 334-352 8-26 (203)
158 3nwj_A ATSK2; P loop, shikimat 88.7 0.11 3.7E-06 50.3 0.9 19 334-352 48-66 (250)
159 1in4_A RUVB, holliday junction 88.7 0.11 3.8E-06 51.3 1.0 18 335-352 52-69 (334)
160 3uk6_A RUVB-like 2; hexameric 88.6 0.14 4.9E-06 50.1 1.7 19 334-352 70-88 (368)
161 3sop_A Neuronal-specific septi 88.6 0.14 4.9E-06 49.7 1.7 17 336-352 4-20 (270)
162 1cr0_A DNA primase/helicase; R 88.5 0.16 5.4E-06 48.8 1.9 21 332-352 33-53 (296)
163 1zd8_A GTP:AMP phosphotransfer 88.5 0.15 5.2E-06 47.0 1.7 19 334-352 7-25 (227)
164 1ukz_A Uridylate kinase; trans 88.5 0.12 4.2E-06 46.4 1.0 19 334-352 15-33 (203)
165 3co5_A Putative two-component 88.5 0.12 4.2E-06 44.7 1.0 19 334-352 27-45 (143)
166 2og2_A Putative signal recogni 88.3 0.13 4.3E-06 52.6 1.1 46 303-352 128-175 (359)
167 1njg_A DNA polymerase III subu 88.2 0.16 5.5E-06 44.9 1.5 18 335-352 46-63 (250)
168 2gj8_A MNME, tRNA modification 88.1 0.16 5.5E-06 44.6 1.5 20 333-352 3-22 (172)
169 2f1r_A Molybdopterin-guanine d 87.9 0.097 3.3E-06 47.7 -0.0 18 335-352 3-20 (171)
170 2dpy_A FLII, flagellum-specifi 87.9 0.18 6.2E-06 52.6 2.0 20 333-352 156-175 (438)
171 2obl_A ESCN; ATPase, hydrolase 87.8 0.18 6.1E-06 51.0 1.8 20 333-352 70-89 (347)
172 3kta_A Chromosome segregation 87.8 0.22 7.4E-06 43.9 2.2 17 336-352 28-44 (182)
173 2chg_A Replication factor C sm 87.8 0.15 5E-06 44.8 1.0 17 336-352 40-56 (226)
174 1d2n_A N-ethylmaleimide-sensit 87.7 0.16 5.3E-06 48.1 1.3 18 335-352 65-82 (272)
175 2gza_A Type IV secretion syste 87.7 0.16 5.3E-06 51.4 1.3 21 332-352 173-193 (361)
176 1ltq_A Polynucleotide kinase; 87.6 0.16 5.5E-06 48.6 1.3 17 336-352 4-20 (301)
177 3a4m_A L-seryl-tRNA(SEC) kinas 87.6 0.15 5.1E-06 48.6 1.0 18 335-352 5-22 (260)
178 1lw7_A Transcriptional regulat 87.5 0.13 4.6E-06 51.4 0.7 19 334-352 170-188 (365)
179 3eie_A Vacuolar protein sortin 87.5 0.18 6.2E-06 49.4 1.6 19 334-352 51-69 (322)
180 4eaq_A DTMP kinase, thymidylat 87.4 0.17 6E-06 47.6 1.4 20 333-352 25-44 (229)
181 1vht_A Dephospho-COA kinase; s 87.4 0.18 6.1E-06 46.0 1.4 19 334-352 4-22 (218)
182 3tlx_A Adenylate kinase 2; str 87.4 0.17 5.8E-06 47.8 1.3 19 334-352 29-47 (243)
183 1u0l_A Probable GTPase ENGC; p 87.3 0.2 6.7E-06 49.1 1.7 20 333-352 168-187 (301)
184 1odf_A YGR205W, hypothetical 3 87.2 0.18 6.1E-06 49.7 1.4 20 333-352 30-49 (290)
185 1oix_A RAS-related protein RAB 87.2 0.2 6.8E-06 44.7 1.6 17 336-352 31-47 (191)
186 1l8q_A Chromosomal replication 87.2 0.15 5.1E-06 49.5 0.8 19 334-352 37-55 (324)
187 1e4v_A Adenylate kinase; trans 87.2 0.17 5.9E-06 46.2 1.2 17 336-352 2-18 (214)
188 1zuh_A Shikimate kinase; alpha 87.2 0.19 6.4E-06 43.9 1.3 18 335-352 8-25 (168)
189 2px0_A Flagellar biosynthesis 87.1 0.2 7E-06 49.3 1.7 21 332-352 103-123 (296)
190 2yv5_A YJEQ protein; hydrolase 87.1 0.21 7E-06 49.2 1.7 20 333-352 164-183 (302)
191 1a7j_A Phosphoribulokinase; tr 86.9 0.21 7.3E-06 48.9 1.7 19 334-352 5-23 (290)
192 1xwi_A SKD1 protein; VPS4B, AA 86.9 0.2 6.9E-06 49.5 1.5 19 334-352 45-63 (322)
193 1ofh_A ATP-dependent HSL prote 86.9 0.17 5.9E-06 47.8 1.0 20 333-352 49-68 (310)
194 4fcw_A Chaperone protein CLPB; 86.7 0.19 6.5E-06 47.9 1.2 18 335-352 48-65 (311)
195 2f9l_A RAB11B, member RAS onco 86.7 0.21 7.1E-06 44.6 1.4 17 336-352 7-23 (199)
196 2xb4_A Adenylate kinase; ATP-b 86.6 0.18 6.2E-06 46.8 1.0 17 336-352 2-18 (223)
197 2yl4_A ATP-binding cassette SU 86.6 0.25 8.5E-06 53.0 2.2 21 332-352 368-388 (595)
198 3b60_A Lipid A export ATP-bind 86.6 0.24 8.3E-06 52.9 2.1 21 332-352 367-387 (582)
199 2zej_A Dardarin, leucine-rich 86.6 0.2 6.8E-06 44.2 1.2 17 336-352 4-20 (184)
200 2pt7_A CAG-ALFA; ATPase, prote 86.5 0.2 6.7E-06 50.1 1.3 21 332-352 169-189 (330)
201 3cr8_A Sulfate adenylyltranfer 86.5 0.15 5.1E-06 55.0 0.4 21 332-352 367-387 (552)
202 1nrj_B SR-beta, signal recogni 86.5 0.27 9.1E-06 44.2 2.0 19 334-352 12-30 (218)
203 2ewv_A Twitching motility prot 86.4 0.22 7.6E-06 50.6 1.6 21 332-352 134-154 (372)
204 2ce2_X GTPase HRAS; signaling 86.4 0.25 8.4E-06 41.3 1.6 17 336-352 5-21 (166)
205 2qby_A CDC6 homolog 1, cell di 86.3 0.21 7.3E-06 48.3 1.3 20 333-352 44-63 (386)
206 3t15_A Ribulose bisphosphate c 86.2 0.23 7.8E-06 48.3 1.5 19 334-352 36-54 (293)
207 2r62_A Cell division protease 86.1 0.096 3.3E-06 49.2 -1.2 18 335-352 45-62 (268)
208 4a82_A Cystic fibrosis transme 86.1 0.26 8.7E-06 52.8 2.0 21 332-352 365-385 (578)
209 2yhs_A FTSY, cell division pro 86.1 0.23 7.8E-06 53.3 1.6 21 332-352 291-311 (503)
210 3be4_A Adenylate kinase; malar 86.1 0.25 8.6E-06 45.4 1.7 19 334-352 5-23 (217)
211 2wji_A Ferrous iron transport 86.1 0.24 8.4E-06 42.8 1.5 17 336-352 5-21 (165)
212 3tqc_A Pantothenate kinase; bi 86.1 0.21 7.3E-06 50.2 1.3 17 336-352 94-110 (321)
213 3hws_A ATP-dependent CLP prote 86.0 0.23 7.8E-06 49.3 1.4 20 333-352 50-69 (363)
214 1np6_A Molybdopterin-guanine d 85.9 0.26 8.7E-06 45.1 1.5 18 335-352 7-24 (174)
215 1uj2_A Uridine-cytidine kinase 85.8 0.23 7.9E-06 46.8 1.3 18 335-352 23-40 (252)
216 3b5x_A Lipid A export ATP-bind 85.7 0.26 8.9E-06 52.7 1.8 21 332-352 367-387 (582)
217 1vma_A Cell division protein F 85.7 0.22 7.6E-06 49.5 1.2 43 304-352 79-122 (306)
218 1pzn_A RAD51, DNA repair and r 85.7 0.23 7.8E-06 50.0 1.3 21 332-352 129-149 (349)
219 3jvv_A Twitching mobility prot 85.7 0.25 8.5E-06 50.2 1.5 19 334-352 123-141 (356)
220 1tf7_A KAIC; homohexamer, hexa 85.6 0.26 8.9E-06 51.9 1.7 21 332-352 37-57 (525)
221 2rcn_A Probable GTPase ENGC; Y 85.6 0.27 9.2E-06 50.3 1.7 20 333-352 214-233 (358)
222 3lda_A DNA repair protein RAD5 85.6 0.26 9E-06 50.9 1.7 21 332-352 176-196 (400)
223 3ux8_A Excinuclease ABC, A sub 85.5 0.26 8.8E-06 53.6 1.6 20 332-351 42-61 (670)
224 2qgz_A Helicase loader, putati 85.5 0.25 8.4E-06 48.8 1.3 19 334-352 152-170 (308)
225 3ake_A Cytidylate kinase; CMP 85.5 0.25 8.6E-06 44.1 1.3 17 336-352 4-20 (208)
226 1xjc_A MOBB protein homolog; s 85.4 0.26 8.8E-06 45.3 1.4 18 335-352 5-22 (169)
227 1yqt_A RNAse L inhibitor; ATP- 85.4 0.29 1E-05 52.2 2.0 21 332-352 45-65 (538)
228 3qf4_B Uncharacterized ABC tra 85.4 0.31 1.1E-05 52.4 2.2 21 332-352 379-399 (598)
229 1kao_A RAP2A; GTP-binding prot 85.4 0.28 9.5E-06 41.1 1.5 17 336-352 5-21 (167)
230 3r20_A Cytidylate kinase; stru 85.4 0.25 8.4E-06 47.6 1.3 18 335-352 10-27 (233)
231 3zvl_A Bifunctional polynucleo 85.4 0.28 9.5E-06 50.4 1.7 19 334-352 258-276 (416)
232 1ak2_A Adenylate kinase isoenz 85.4 0.3 1E-05 45.4 1.8 20 333-352 15-34 (233)
233 3ux8_A Excinuclease ABC, A sub 85.4 0.27 9.3E-06 53.4 1.7 20 332-351 346-365 (670)
234 1svm_A Large T antigen; AAA+ f 85.3 0.29 9.8E-06 50.3 1.8 21 332-352 167-187 (377)
235 2wjg_A FEOB, ferrous iron tran 85.3 0.28 9.6E-06 42.7 1.5 17 336-352 9-25 (188)
236 2v1u_A Cell division control p 85.3 0.21 7.2E-06 48.4 0.7 20 333-352 43-62 (387)
237 1g8f_A Sulfate adenylyltransfe 85.2 0.19 6.6E-06 53.7 0.5 21 332-352 393-413 (511)
238 1sxj_C Activator 1 40 kDa subu 85.2 0.24 8.2E-06 48.6 1.1 16 337-352 49-64 (340)
239 1sxj_E Activator 1 40 kDa subu 85.1 0.24 8.1E-06 48.2 1.0 16 337-352 39-54 (354)
240 1z2a_A RAS-related protein RAB 85.1 0.27 9.2E-06 41.5 1.2 17 336-352 7-23 (168)
241 1u8z_A RAS-related protein RAL 85.1 0.3 1E-05 41.0 1.5 17 336-352 6-22 (168)
242 1fnn_A CDC6P, cell division co 85.0 0.32 1.1E-05 47.4 1.9 17 336-352 46-62 (389)
243 2dyk_A GTP-binding protein; GT 85.0 0.3 1E-05 41.0 1.5 17 336-352 3-19 (161)
244 2npi_A Protein CLP1; CLP1-PCF1 84.9 0.28 9.6E-06 51.6 1.5 21 332-352 136-156 (460)
245 1ek0_A Protein (GTP-binding pr 84.9 0.28 9.5E-06 41.4 1.2 17 336-352 5-21 (170)
246 3q72_A GTP-binding protein RAD 84.9 0.29 1E-05 41.4 1.4 17 336-352 4-20 (166)
247 1t9h_A YLOQ, probable GTPase E 84.8 0.16 5.6E-06 50.7 -0.3 20 333-352 172-191 (307)
248 1p5z_B DCK, deoxycytidine kina 84.8 0.28 9.7E-06 46.4 1.4 21 332-352 22-42 (263)
249 1nij_A Hypothetical protein YJ 84.8 0.31 1.1E-05 48.0 1.7 17 336-352 6-22 (318)
250 3pfi_A Holliday junction ATP-d 84.8 0.25 8.6E-06 47.9 1.0 18 335-352 56-73 (338)
251 3m6a_A ATP-dependent protease 84.7 0.28 9.7E-06 52.2 1.5 20 333-352 107-126 (543)
252 3d8b_A Fidgetin-like protein 1 84.6 0.35 1.2E-05 48.3 2.0 21 332-352 115-135 (357)
253 1c1y_A RAS-related protein RAP 84.6 0.32 1.1E-05 41.0 1.5 17 336-352 5-21 (167)
254 1g16_A RAS-related protein SEC 84.5 0.34 1.2E-05 41.0 1.6 17 336-352 5-21 (170)
255 1ky3_A GTP-binding protein YPT 84.5 0.32 1.1E-05 41.6 1.5 17 336-352 10-26 (182)
256 3j16_B RLI1P; ribosome recycli 84.5 0.34 1.2E-05 52.8 2.0 21 332-352 101-121 (608)
257 2ged_A SR-beta, signal recogni 84.5 0.32 1.1E-05 42.6 1.5 19 334-352 48-66 (193)
258 3q85_A GTP-binding protein REM 84.5 0.3 1E-05 41.5 1.2 17 336-352 4-20 (169)
259 1z08_A RAS-related protein RAB 84.3 0.33 1.1E-05 41.2 1.4 17 336-352 8-24 (170)
260 2fn4_A P23, RAS-related protei 84.2 0.35 1.2E-05 41.3 1.6 18 335-352 10-27 (181)
261 3qf4_A ABC transporter, ATP-bi 84.2 0.36 1.2E-05 51.9 2.0 21 332-352 367-387 (587)
262 2f6r_A COA synthase, bifunctio 84.2 0.31 1.1E-05 47.2 1.4 18 335-352 76-93 (281)
263 2nzj_A GTP-binding protein REM 84.1 0.34 1.2E-05 41.3 1.5 17 336-352 6-22 (175)
264 2bjv_A PSP operon transcriptio 84.1 0.28 9.5E-06 46.1 1.0 19 334-352 29-47 (265)
265 1g8p_A Magnesium-chelatase 38 84.1 0.26 8.8E-06 47.7 0.7 16 337-352 48-63 (350)
266 2qby_B CDC6 homolog 3, cell di 84.0 0.39 1.3E-05 46.9 2.0 19 334-352 45-63 (384)
267 2qag_B Septin-6, protein NEDD5 84.0 0.37 1.3E-05 50.5 1.9 21 332-352 38-60 (427)
268 2c9o_A RUVB-like 1; hexameric 83.9 0.33 1.1E-05 50.2 1.5 19 334-352 63-81 (456)
269 4b4t_M 26S protease regulatory 83.9 0.31 1.1E-05 51.1 1.3 19 334-352 215-233 (434)
270 3pqc_A Probable GTP-binding pr 83.8 0.36 1.2E-05 41.8 1.5 18 335-352 24-41 (195)
271 2erx_A GTP-binding protein DI- 83.8 0.33 1.1E-05 41.0 1.2 17 336-352 5-21 (172)
272 1r8s_A ADP-ribosylation factor 83.6 0.34 1.2E-05 40.9 1.2 17 336-352 2-18 (164)
273 1wms_A RAB-9, RAB9, RAS-relate 83.6 0.34 1.2E-05 41.5 1.2 17 336-352 9-25 (177)
274 3pih_A Uvrabc system protein A 83.6 0.39 1.3E-05 54.9 2.0 22 332-353 22-43 (916)
275 1r2q_A RAS-related protein RAB 83.5 0.38 1.3E-05 40.5 1.5 17 336-352 8-24 (170)
276 1um8_A ATP-dependent CLP prote 83.5 0.3 1E-05 48.5 1.0 20 333-352 71-90 (376)
277 3ozx_A RNAse L inhibitor; ATP 83.5 0.35 1.2E-05 51.7 1.6 30 322-352 14-43 (538)
278 1upt_A ARL1, ADP-ribosylation 83.3 0.39 1.3E-05 40.8 1.5 18 335-352 8-25 (171)
279 3ozx_A RNAse L inhibitor; ATP 83.3 0.36 1.2E-05 51.6 1.6 21 332-352 292-312 (538)
280 2y8e_A RAB-protein 6, GH09086P 83.3 0.41 1.4E-05 40.8 1.6 17 336-352 16-32 (179)
281 1hqc_A RUVB; extended AAA-ATPa 83.2 0.27 9.2E-06 47.1 0.5 19 334-352 38-56 (324)
282 3bc1_A RAS-related protein RAB 83.1 0.37 1.3E-05 41.6 1.2 17 336-352 13-29 (195)
283 1z0j_A RAB-22, RAS-related pro 83.1 0.4 1.4E-05 40.5 1.5 17 336-352 8-24 (170)
284 3bk7_A ABC transporter ATP-bin 83.0 0.43 1.5E-05 51.9 2.0 21 332-352 115-135 (607)
285 4b4t_L 26S protease subunit RP 82.9 0.36 1.2E-05 50.7 1.3 19 334-352 215-233 (437)
286 2zts_A Putative uncharacterize 82.9 0.4 1.4E-05 43.7 1.5 20 333-352 29-48 (251)
287 1q3t_A Cytidylate kinase; nucl 82.9 0.45 1.5E-05 44.3 1.8 20 333-352 15-34 (236)
288 3tw8_B RAS-related protein RAB 82.9 0.37 1.3E-05 41.1 1.2 17 336-352 11-27 (181)
289 2qp9_X Vacuolar protein sortin 82.8 0.33 1.1E-05 48.5 1.0 19 334-352 84-102 (355)
290 4b4t_K 26S protease regulatory 82.7 0.36 1.2E-05 50.5 1.3 45 303-352 179-224 (428)
291 1moz_A ARL1, ADP-ribosylation 82.7 0.4 1.4E-05 41.4 1.3 19 334-352 18-36 (183)
292 2cxx_A Probable GTP-binding pr 82.7 0.43 1.5E-05 41.3 1.5 17 336-352 3-19 (190)
293 3vfd_A Spastin; ATPase, microt 82.7 0.4 1.4E-05 48.2 1.5 20 333-352 147-166 (389)
294 3con_A GTPase NRAS; structural 82.6 0.42 1.4E-05 41.7 1.5 17 336-352 23-39 (190)
295 4dsu_A GTPase KRAS, isoform 2B 82.6 0.39 1.3E-05 41.5 1.2 17 336-352 6-22 (189)
296 1sxj_D Activator 1 41 kDa subu 82.6 0.35 1.2E-05 46.7 1.0 16 337-352 61-76 (353)
297 2ygr_A Uvrabc system protein A 82.6 0.39 1.3E-05 55.4 1.5 22 332-353 44-65 (993)
298 2a9k_A RAS-related protein RAL 82.5 0.43 1.5E-05 41.0 1.5 17 336-352 20-36 (187)
299 3umf_A Adenylate kinase; rossm 82.5 0.39 1.3E-05 45.6 1.3 21 332-352 27-47 (217)
300 2ocp_A DGK, deoxyguanosine kin 82.5 0.39 1.3E-05 44.7 1.3 19 334-352 2-20 (241)
301 2r6f_A Excinuclease ABC subuni 82.5 0.4 1.4E-05 55.2 1.6 21 333-353 43-63 (972)
302 1p9r_A General secretion pathw 82.5 0.41 1.4E-05 49.8 1.5 20 333-352 166-185 (418)
303 3a8t_A Adenylate isopentenyltr 82.5 0.4 1.4E-05 48.9 1.4 20 333-352 39-58 (339)
304 2vf7_A UVRA2, excinuclease ABC 82.5 0.41 1.4E-05 54.2 1.6 34 320-353 14-55 (842)
305 1zu4_A FTSY; GTPase, signal re 82.5 0.37 1.3E-05 48.1 1.1 21 332-352 103-123 (320)
306 1svi_A GTP-binding protein YSX 82.3 0.46 1.6E-05 41.6 1.5 19 334-352 23-41 (195)
307 3pvs_A Replication-associated 82.2 0.39 1.3E-05 50.1 1.3 18 335-352 51-68 (447)
308 2r44_A Uncharacterized protein 82.2 0.26 8.8E-06 47.9 -0.1 19 334-352 46-64 (331)
309 2g6b_A RAS-related protein RAB 82.1 0.46 1.6E-05 40.8 1.5 17 336-352 12-28 (180)
310 3ihw_A Centg3; RAS, centaurin, 82.0 0.45 1.5E-05 42.2 1.4 17 336-352 22-38 (184)
311 3sr0_A Adenylate kinase; phosp 82.0 0.42 1.4E-05 44.7 1.3 17 336-352 2-18 (206)
312 1mh1_A RAC1; GTP-binding, GTPa 82.0 0.42 1.5E-05 41.1 1.2 17 336-352 7-23 (186)
313 2zan_A Vacuolar protein sortin 82.0 0.42 1.4E-05 49.4 1.4 19 334-352 167-185 (444)
314 2bov_A RAla, RAS-related prote 82.0 0.46 1.6E-05 41.8 1.5 17 336-352 16-32 (206)
315 2hxs_A RAB-26, RAS-related pro 82.0 0.42 1.4E-05 40.9 1.2 17 336-352 8-24 (178)
316 1z0f_A RAB14, member RAS oncog 82.0 0.47 1.6E-05 40.4 1.5 17 336-352 17-33 (179)
317 3t5g_A GTP-binding protein RHE 81.9 0.49 1.7E-05 40.8 1.6 17 336-352 8-24 (181)
318 2grj_A Dephospho-COA kinase; T 81.9 0.43 1.5E-05 44.1 1.3 18 335-352 13-30 (192)
319 1fzq_A ADP-ribosylation factor 81.8 0.49 1.7E-05 41.6 1.6 18 335-352 17-34 (181)
320 4edh_A DTMP kinase, thymidylat 81.8 0.42 1.4E-05 44.9 1.2 19 334-352 6-24 (213)
321 2efe_B Small GTP-binding prote 81.8 0.47 1.6E-05 40.7 1.4 17 336-352 14-30 (181)
322 2fu5_C RAS-related protein RAB 81.7 0.52 1.8E-05 40.8 1.7 17 336-352 10-26 (183)
323 2bme_A RAB4A, RAS-related prot 81.6 0.51 1.8E-05 40.8 1.6 17 336-352 12-28 (186)
324 3k1j_A LON protease, ATP-depen 81.5 0.4 1.4E-05 51.5 1.0 19 334-352 60-78 (604)
325 2oil_A CATX-8, RAS-related pro 81.4 0.49 1.7E-05 41.5 1.4 17 336-352 27-43 (193)
326 4tmk_A Protein (thymidylate ki 81.4 0.51 1.7E-05 44.4 1.6 19 334-352 3-21 (213)
327 3t1o_A Gliding protein MGLA; G 81.4 0.46 1.6E-05 41.2 1.2 17 336-352 16-32 (198)
328 3kkq_A RAS-related protein M-R 81.3 0.5 1.7E-05 40.8 1.5 17 336-352 20-36 (183)
329 3crm_A TRNA delta(2)-isopenten 81.3 0.44 1.5E-05 48.1 1.2 18 335-352 6-23 (323)
330 1yqt_A RNAse L inhibitor; ATP- 81.3 0.5 1.7E-05 50.4 1.7 21 332-352 310-330 (538)
331 3j16_B RLI1P; ribosome recycli 81.2 0.51 1.7E-05 51.4 1.8 21 332-352 376-396 (608)
332 4b4t_J 26S protease regulatory 81.2 0.39 1.3E-05 50.1 0.8 18 335-352 183-200 (405)
333 3lv8_A DTMP kinase, thymidylat 81.2 0.53 1.8E-05 45.2 1.7 19 334-352 27-45 (236)
334 3bwd_D RAC-like GTP-binding pr 81.1 0.52 1.8E-05 40.5 1.5 18 335-352 9-26 (182)
335 3v9p_A DTMP kinase, thymidylat 81.1 0.46 1.6E-05 45.3 1.2 20 333-352 24-43 (227)
336 2oap_1 GSPE-2, type II secreti 81.1 0.47 1.6E-05 50.5 1.4 20 333-352 259-278 (511)
337 1tf7_A KAIC; homohexamer, hexa 81.0 0.5 1.7E-05 49.8 1.6 21 332-352 279-299 (525)
338 4bas_A ADP-ribosylation factor 81.0 0.52 1.8E-05 41.2 1.4 18 335-352 18-35 (199)
339 1m8p_A Sulfate adenylyltransfe 80.9 0.5 1.7E-05 51.0 1.5 20 333-352 395-414 (573)
340 3exa_A TRNA delta(2)-isopenten 80.9 0.45 1.5E-05 48.3 1.1 19 334-352 3-21 (322)
341 3clv_A RAB5 protein, putative; 80.9 0.49 1.7E-05 40.9 1.2 17 336-352 9-25 (208)
342 3lxx_A GTPase IMAP family memb 80.9 0.52 1.8E-05 43.6 1.5 17 336-352 31-47 (239)
343 2qnr_A Septin-2, protein NEDD5 80.9 0.48 1.6E-05 46.5 1.3 17 336-352 20-36 (301)
344 2z4s_A Chromosomal replication 80.8 0.44 1.5E-05 49.3 1.1 19 334-352 130-148 (440)
345 2qm8_A GTPase/ATPase; G protei 80.8 0.52 1.8E-05 47.1 1.5 21 332-352 53-73 (337)
346 1f6b_A SAR1; gtpases, N-termin 80.8 0.46 1.6E-05 42.6 1.1 18 335-352 26-43 (198)
347 3cbq_A GTP-binding protein REM 80.7 0.5 1.7E-05 42.4 1.2 17 336-352 25-41 (195)
348 2wsm_A Hydrogenase expression/ 80.6 0.49 1.7E-05 42.7 1.2 18 335-352 31-48 (221)
349 3tkl_A RAS-related protein RAB 80.5 0.56 1.9E-05 40.9 1.5 17 336-352 18-34 (196)
350 1z06_A RAS-related protein RAB 80.5 0.55 1.9E-05 41.1 1.5 17 336-352 22-38 (189)
351 1m7b_A RND3/RHOE small GTP-bin 80.4 0.54 1.9E-05 41.1 1.4 17 336-352 9-25 (184)
352 2h57_A ADP-ribosylation factor 80.4 0.59 2E-05 41.0 1.6 18 335-352 22-39 (190)
353 3d3q_A TRNA delta(2)-isopenten 80.4 0.5 1.7E-05 48.1 1.3 18 335-352 8-25 (340)
354 2zr9_A Protein RECA, recombina 80.3 0.58 2E-05 47.2 1.7 20 333-352 60-79 (349)
355 3bk7_A ABC transporter ATP-bin 80.2 0.57 1.9E-05 50.9 1.7 21 332-352 380-400 (607)
356 3tmk_A Thymidylate kinase; pho 80.1 0.67 2.3E-05 43.9 2.0 20 333-352 4-23 (216)
357 3l0i_B RAS-related protein RAB 80.1 0.72 2.4E-05 41.0 2.1 17 336-352 35-51 (199)
358 3dz8_A RAS-related protein RAB 80.1 0.57 1.9E-05 41.2 1.4 17 336-352 25-41 (191)
359 2gf0_A GTP-binding protein DI- 80.1 0.56 1.9E-05 41.0 1.3 18 335-352 9-26 (199)
360 3hr8_A Protein RECA; alpha and 80.1 0.52 1.8E-05 48.1 1.3 19 334-352 61-79 (356)
361 1iqp_A RFCS; clamp loader, ext 79.9 0.49 1.7E-05 44.9 1.0 17 336-352 48-64 (327)
362 1ksh_A ARF-like protein 2; sma 79.9 0.61 2.1E-05 40.5 1.5 19 334-352 18-36 (186)
363 2z43_A DNA repair and recombin 79.8 0.62 2.1E-05 45.9 1.7 21 332-352 105-125 (324)
364 2hf9_A Probable hydrogenase ni 79.8 0.63 2.2E-05 42.1 1.6 18 335-352 39-56 (226)
365 2chq_A Replication factor C sm 79.8 0.51 1.7E-05 44.6 1.0 17 336-352 40-56 (319)
366 1sky_E F1-ATPase, F1-ATP synth 79.7 0.54 1.9E-05 50.0 1.3 19 334-352 151-169 (473)
367 2gf9_A RAS-related protein RAB 79.7 0.61 2.1E-05 40.8 1.5 17 336-352 24-40 (189)
368 4f4c_A Multidrug resistance pr 79.7 0.79 2.7E-05 54.0 2.8 21 332-352 1103-1123(1321)
369 1m2o_B GTP-binding protein SAR 79.7 0.67 2.3E-05 41.1 1.7 21 332-352 21-41 (190)
370 3c5c_A RAS-like protein 12; GD 79.7 0.56 1.9E-05 41.4 1.2 17 336-352 23-39 (187)
371 2axn_A 6-phosphofructo-2-kinas 79.6 0.81 2.8E-05 48.7 2.6 18 335-352 36-53 (520)
372 2fh5_B SR-beta, signal recogni 79.5 0.62 2.1E-05 41.6 1.5 18 335-352 8-25 (214)
373 2iwr_A Centaurin gamma 1; ANK 79.4 0.48 1.6E-05 40.8 0.7 17 336-352 9-25 (178)
374 3llu_A RAS-related GTP-binding 79.4 0.66 2.3E-05 41.2 1.6 18 335-352 21-38 (196)
375 1zj6_A ADP-ribosylation factor 79.3 0.67 2.3E-05 40.5 1.6 18 335-352 17-34 (187)
376 3ld9_A DTMP kinase, thymidylat 79.3 0.62 2.1E-05 44.4 1.4 21 332-352 19-39 (223)
377 3qf7_A RAD50; ABC-ATPase, ATPa 79.2 0.59 2E-05 47.2 1.3 16 336-351 25-40 (365)
378 2fg5_A RAB-22B, RAS-related pr 79.1 0.68 2.3E-05 40.9 1.6 17 336-352 25-41 (192)
379 3euj_A Chromosome partition pr 79.1 0.63 2.2E-05 49.5 1.6 18 335-352 30-47 (483)
380 1zbd_A Rabphilin-3A; G protein 79.1 0.65 2.2E-05 41.0 1.5 17 336-352 10-26 (203)
381 1vg8_A RAS-related protein RAB 79.1 0.65 2.2E-05 41.0 1.5 17 336-352 10-26 (207)
382 3oes_A GTPase rhebl1; small GT 79.1 0.69 2.3E-05 41.1 1.6 17 336-352 26-42 (201)
383 2h17_A ADP-ribosylation factor 79.1 0.62 2.1E-05 40.6 1.3 18 335-352 22-39 (181)
384 2a5j_A RAS-related protein RAB 79.0 0.65 2.2E-05 40.8 1.4 17 336-352 23-39 (191)
385 1ypw_A Transitional endoplasmi 79.0 0.55 1.9E-05 52.5 1.2 21 332-352 236-256 (806)
386 4b4t_I 26S protease regulatory 79.0 0.59 2E-05 49.3 1.3 45 303-352 189-234 (437)
387 2bcg_Y Protein YP2, GTP-bindin 78.9 0.7 2.4E-05 41.0 1.6 17 336-352 10-26 (206)
388 1tq4_A IIGP1, interferon-induc 78.9 0.7 2.4E-05 48.1 1.8 17 336-352 71-87 (413)
389 1x3s_A RAS-related protein RAB 78.9 0.68 2.3E-05 40.2 1.5 17 336-352 17-33 (195)
390 3reg_A RHO-like small GTPase; 78.8 0.62 2.1E-05 41.0 1.2 17 336-352 25-41 (194)
391 1jr3_A DNA polymerase III subu 78.8 0.65 2.2E-05 45.1 1.5 18 335-352 39-56 (373)
392 2il1_A RAB12; G-protein, GDP, 78.8 0.68 2.3E-05 41.0 1.5 17 336-352 28-44 (192)
393 1v5w_A DMC1, meiotic recombina 78.6 0.61 2.1E-05 46.5 1.3 21 332-352 120-140 (343)
394 3llm_A ATP-dependent RNA helic 78.6 0.74 2.5E-05 42.7 1.7 19 332-350 74-92 (235)
395 2atv_A RERG, RAS-like estrogen 78.6 0.69 2.4E-05 40.9 1.5 18 335-352 29-46 (196)
396 1x6v_B Bifunctional 3'-phospho 78.6 0.66 2.3E-05 51.0 1.6 20 333-352 51-70 (630)
397 3foz_A TRNA delta(2)-isopenten 78.5 0.61 2.1E-05 47.2 1.2 18 335-352 11-28 (316)
398 2q3h_A RAS homolog gene family 78.4 0.65 2.2E-05 41.0 1.2 18 335-352 21-38 (201)
399 2o52_A RAS-related protein RAB 78.4 0.74 2.5E-05 41.1 1.6 17 336-352 27-43 (200)
400 4b4t_H 26S protease regulatory 78.4 0.53 1.8E-05 50.0 0.8 19 334-352 243-261 (467)
401 1f2t_A RAD50 ABC-ATPase; DNA d 78.2 0.77 2.6E-05 40.4 1.7 18 334-351 23-40 (149)
402 2ew1_A RAS-related protein RAB 78.2 0.75 2.6E-05 41.6 1.6 17 336-352 28-44 (201)
403 2i1q_A DNA repair and recombin 78.1 0.66 2.3E-05 45.3 1.3 20 333-352 97-116 (322)
404 2fv8_A H6, RHO-related GTP-bin 78.1 0.76 2.6E-05 41.2 1.6 17 336-352 27-43 (207)
405 2ce7_A Cell division protein F 78.1 0.67 2.3E-05 49.0 1.4 18 335-352 50-67 (476)
406 1ojl_A Transcriptional regulat 78.1 0.63 2.2E-05 45.6 1.1 19 334-352 25-43 (304)
407 4gzl_A RAS-related C3 botulinu 78.0 0.77 2.6E-05 41.2 1.6 18 335-352 31-48 (204)
408 2dhr_A FTSH; AAA+ protein, hex 78.0 0.61 2.1E-05 49.6 1.1 17 336-352 66-82 (499)
409 2yc2_C IFT27, small RAB-relate 78.0 0.5 1.7E-05 41.5 0.4 17 336-352 22-38 (208)
410 3cph_A RAS-related protein SEC 77.9 0.69 2.4E-05 41.0 1.2 18 335-352 21-38 (213)
411 3hu3_A Transitional endoplasmi 77.9 0.71 2.4E-05 48.8 1.5 19 334-352 238-256 (489)
412 2p5s_A RAS and EF-hand domain 77.8 0.74 2.5E-05 40.8 1.4 18 335-352 29-46 (199)
413 1zd9_A ADP-ribosylation factor 77.8 0.76 2.6E-05 40.4 1.5 18 335-352 23-40 (188)
414 1sxj_B Activator 1 37 kDa subu 77.8 0.64 2.2E-05 44.0 1.0 16 337-352 45-60 (323)
415 4djt_A GTP-binding nuclear pro 77.7 0.75 2.6E-05 41.2 1.5 17 336-352 13-29 (218)
416 2qu8_A Putative nucleolar GTP- 77.6 0.76 2.6E-05 42.0 1.5 18 335-352 30-47 (228)
417 3k53_A Ferrous iron transport 77.5 0.8 2.7E-05 43.5 1.6 17 336-352 5-21 (271)
418 2x77_A ADP-ribosylation factor 77.5 0.74 2.5E-05 40.2 1.3 19 334-352 22-40 (189)
419 1sxj_A Activator 1 95 kDa subu 77.5 0.72 2.5E-05 48.5 1.4 18 335-352 78-95 (516)
420 3gj0_A GTP-binding nuclear pro 77.4 0.81 2.8E-05 41.3 1.6 17 336-352 17-33 (221)
421 2f7s_A C25KG, RAS-related prot 77.3 0.71 2.4E-05 41.3 1.2 17 336-352 27-43 (217)
422 1bif_A 6-phosphofructo-2-kinas 77.2 0.7 2.4E-05 47.9 1.3 19 334-352 39-57 (469)
423 2b6h_A ADP-ribosylation factor 77.2 0.78 2.7E-05 40.8 1.4 19 334-352 29-47 (192)
424 4aby_A DNA repair protein RECN 77.1 0.45 1.6E-05 47.7 -0.2 19 332-351 59-77 (415)
425 2atx_A Small GTP binding prote 77.1 0.85 2.9E-05 40.0 1.6 17 336-352 20-36 (194)
426 3kl4_A SRP54, signal recogniti 77.1 0.53 1.8E-05 49.3 0.3 20 333-352 96-115 (433)
427 2j1l_A RHO-related GTP-binding 77.0 0.85 2.9E-05 41.2 1.6 17 336-352 36-52 (214)
428 1ls1_A Signal recognition part 76.9 0.65 2.2E-05 45.6 0.8 20 333-352 97-116 (295)
429 2xtp_A GTPase IMAP family memb 76.9 0.84 2.9E-05 42.7 1.6 18 335-352 23-40 (260)
430 2j0v_A RAC-like GTP-binding pr 76.8 0.81 2.8E-05 40.8 1.4 17 336-352 11-27 (212)
431 3nbx_X ATPase RAVA; AAA+ ATPas 76.7 0.8 2.7E-05 48.7 1.5 19 334-352 41-59 (500)
432 2gco_A H9, RHO-related GTP-bin 76.4 0.92 3.1E-05 40.4 1.6 17 336-352 27-43 (201)
433 2vhj_A Ntpase P4, P4; non- hyd 76.3 0.75 2.6E-05 46.9 1.1 19 334-352 123-141 (331)
434 2cjw_A GTP-binding protein GEM 76.3 0.81 2.8E-05 40.9 1.2 17 336-352 8-24 (192)
435 4dhe_A Probable GTP-binding pr 76.3 0.54 1.8E-05 42.2 0.1 19 334-352 29-47 (223)
436 3t5d_A Septin-7; GTP-binding p 76.3 0.89 3E-05 43.4 1.6 17 336-352 10-26 (274)
437 3eph_A TRNA isopentenyltransfe 76.3 0.82 2.8E-05 47.8 1.4 17 336-352 4-20 (409)
438 3ice_A Transcription terminati 76.2 0.81 2.8E-05 48.1 1.3 20 333-352 173-192 (422)
439 1gwn_A RHO-related GTP-binding 75.8 0.88 3E-05 41.2 1.4 17 336-352 30-46 (205)
440 2ffh_A Protein (FFH); SRP54, s 75.7 1.7 6E-05 45.3 3.7 44 303-352 73-116 (425)
441 2qen_A Walker-type ATPase; unk 75.6 0.94 3.2E-05 43.2 1.5 18 335-352 32-49 (350)
442 1w1w_A Structural maintenance 75.5 0.98 3.3E-05 46.1 1.8 20 333-352 25-44 (430)
443 3te6_A Regulatory protein SIR3 75.5 0.77 2.6E-05 46.1 0.9 21 332-352 43-63 (318)
444 2qag_C Septin-7; cell cycle, c 75.3 0.9 3.1E-05 47.2 1.5 17 336-352 33-49 (418)
445 1tue_A Replication protein E1; 75.3 0.75 2.6E-05 44.2 0.8 19 334-352 58-76 (212)
446 2hup_A RAS-related protein RAB 75.2 1 3.5E-05 40.3 1.6 17 336-352 31-47 (201)
447 3pxg_A Negative regulator of g 75.1 1 3.4E-05 46.9 1.7 18 335-352 202-219 (468)
448 2orw_A Thymidine kinase; TMTK, 75.0 1.1 3.6E-05 40.9 1.7 19 334-352 3-21 (184)
449 3lxw_A GTPase IMAP family memb 74.5 1 3.4E-05 42.6 1.4 17 336-352 23-39 (247)
450 2h92_A Cytidylate kinase; ross 74.5 0.89 3E-05 41.2 1.0 18 335-352 4-21 (219)
451 2iw3_A Elongation factor 3A; a 74.2 1.1 3.7E-05 51.7 1.8 21 332-352 459-479 (986)
452 3bh0_A DNAB-like replicative h 74.1 1.1 3.9E-05 44.0 1.7 21 332-352 66-86 (315)
453 4f4c_A Multidrug resistance pr 74.0 1.2 4E-05 52.6 2.1 21 332-352 442-462 (1321)
454 3th5_A RAS-related C3 botulinu 76.2 0.66 2.2E-05 41.3 0.0 18 335-352 31-48 (204)
455 3q3j_B RHO-related GTP-binding 73.9 1 3.4E-05 40.9 1.2 17 336-352 29-45 (214)
456 3g5u_A MCG1178, multidrug resi 73.8 1.2 3.9E-05 52.5 2.0 21 332-352 414-434 (1284)
457 1j8m_F SRP54, signal recogniti 73.7 0.99 3.4E-05 44.5 1.2 19 334-352 98-116 (297)
458 2vf7_A UVRA2, excinuclease ABC 73.2 1.2 4E-05 50.6 1.8 21 332-352 521-541 (842)
459 2www_A Methylmalonic aciduria 73.0 1.2 4E-05 44.7 1.6 20 333-352 73-92 (349)
460 2fna_A Conserved hypothetical 72.9 1.1 3.9E-05 42.6 1.4 18 335-352 31-48 (357)
461 3io5_A Recombination and repai 72.9 1 3.5E-05 46.0 1.1 18 334-352 29-46 (333)
462 1e69_A Chromosome segregation 72.8 1.4 4.6E-05 43.3 1.9 17 336-352 26-42 (322)
463 3cpj_B GTP-binding protein YPT 72.7 1.1 3.7E-05 40.7 1.2 17 336-352 15-31 (223)
464 3qks_A DNA double-strand break 72.5 1.3 4.5E-05 40.7 1.7 20 333-352 22-41 (203)
465 3qkt_A DNA double-strand break 72.5 1.1 3.9E-05 44.3 1.3 23 330-352 19-41 (339)
466 1u94_A RECA protein, recombina 72.4 1.2 4.2E-05 45.1 1.5 20 333-352 62-81 (356)
467 3def_A T7I23.11 protein; chlor 71.8 1.3 4.6E-05 41.8 1.6 18 335-352 37-54 (262)
468 1h65_A Chloroplast outer envel 71.8 1.3 4.6E-05 41.9 1.6 17 336-352 41-57 (270)
469 1g41_A Heat shock protein HSLU 71.7 1.1 3.7E-05 47.2 1.0 18 335-352 51-68 (444)
470 2v3c_C SRP54, signal recogniti 71.3 1.1 3.7E-05 46.7 0.9 19 334-352 99-117 (432)
471 3dm5_A SRP54, signal recogniti 71.3 1.1 3.7E-05 47.2 0.9 19 334-352 100-118 (443)
472 2gks_A Bifunctional SAT/APS ki 71.2 1.2 4.1E-05 47.7 1.3 20 333-352 371-390 (546)
473 3g5u_A MCG1178, multidrug resi 70.8 1.5 5E-05 51.6 1.9 21 332-352 1057-1077(1284)
474 3cf2_A TER ATPase, transitiona 70.8 1.3 4.4E-05 50.0 1.3 19 334-352 238-256 (806)
475 2g3y_A GTP-binding protein GEM 70.5 1.3 4.6E-05 40.9 1.2 17 336-352 39-55 (211)
476 2r6a_A DNAB helicase, replicat 70.1 1.5 5.3E-05 45.2 1.7 21 332-352 201-221 (454)
477 3pih_A Uvrabc system protein A 70.1 1.5 5.1E-05 50.2 1.7 20 332-351 608-627 (916)
478 1wb9_A DNA mismatch repair pro 69.8 1.6 5.5E-05 49.0 1.9 21 332-352 605-625 (800)
479 3iby_A Ferrous iron transport 69.8 1.6 5.6E-05 41.6 1.7 17 336-352 3-19 (256)
480 2ga8_A Hypothetical 39.9 kDa p 69.6 1.4 4.7E-05 45.3 1.2 17 336-352 26-42 (359)
481 2iw3_A Elongation factor 3A; a 69.4 0.99 3.4E-05 52.0 0.1 21 332-352 697-717 (986)
482 3pxi_A Negative regulator of g 69.4 1.4 4.7E-05 48.4 1.2 17 336-352 523-539 (758)
483 1w5s_A Origin recognition comp 69.4 1 3.6E-05 44.2 0.2 19 334-352 50-70 (412)
484 3b1v_A Ferrous iron uptake tra 69.2 1.6 5.3E-05 42.3 1.5 17 336-352 5-21 (272)
485 3i8s_A Ferrous iron transport 69.0 1.7 5.7E-05 41.8 1.6 17 336-352 5-21 (274)
486 3szr_A Interferon-induced GTP- 68.7 1 3.5E-05 48.7 0.0 16 337-352 48-63 (608)
487 4ag6_A VIRB4 ATPase, type IV s 68.7 1.5 5.1E-05 43.9 1.2 19 334-352 35-53 (392)
488 3u61_B DNA polymerase accessor 68.7 1.3 4.5E-05 42.6 0.8 18 335-352 49-66 (324)
489 3pxi_A Negative regulator of g 68.6 1.7 5.7E-05 47.7 1.7 18 335-352 202-219 (758)
490 1ni3_A YCHF GTPase, YCHF GTP-b 68.5 2 6.8E-05 44.3 2.1 21 332-352 18-38 (392)
491 1qhl_A Protein (cell division 68.4 0.5 1.7E-05 45.1 -2.2 17 336-352 29-45 (227)
492 1c9k_A COBU, adenosylcobinamid 68.2 1.6 5.3E-05 40.6 1.1 16 337-352 2-17 (180)
493 2b8t_A Thymidine kinase; deoxy 68.1 1.6 5.3E-05 41.6 1.1 20 333-352 11-30 (223)
494 2o5v_A DNA replication and rep 68.0 1.6 5.5E-05 44.4 1.3 17 336-352 28-44 (359)
495 1ewq_A DNA mismatch repair pro 67.9 1.7 6E-05 48.5 1.7 19 334-352 576-594 (765)
496 3hjn_A DTMP kinase, thymidylat 67.7 1.6 5.3E-05 40.2 1.0 16 337-352 3-18 (197)
497 4hlc_A DTMP kinase, thymidylat 67.5 1.6 5.3E-05 40.6 1.0 17 336-352 4-20 (205)
498 2qag_A Septin-2, protein NEDD5 67.4 1.4 4.6E-05 44.4 0.6 17 336-352 39-55 (361)
499 2xxa_A Signal recognition part 67.3 1.6 5.5E-05 45.5 1.2 19 334-352 100-118 (433)
500 4dkx_A RAS-related protein RAB 67.3 1.7 5.8E-05 40.5 1.2 17 336-352 15-31 (216)
No 1
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=100.00 E-value=2.2e-109 Score=883.69 Aligned_cols=348 Identities=51% Similarity=0.848 Sum_probs=337.7
Q ss_pred ceeEEcCCHHHHHHHHHhhcCCeEEecCCceEEecCCeecCCCCCeeeecCCCccccccccC----cCccc---------
Q 011235 142 THVLYNLSPAELYEQAIKYEQGSFIASSGALATLSGAKTGRSPRDKRVVKDETTEHELWWGK----MKNHD--------- 208 (490)
Q Consensus 142 ~~v~~Nls~~eL~e~A~~~~~g~~~t~~GaL~~~tG~~TGRSpkdk~iV~~~~t~~~i~wg~----~~e~~--------- 208 (490)
.+|+||++++||||+|+++++|+.++++|+|++.||++|||||+|||||+++.++++|||++ ++++.
T Consensus 2 ~~v~~n~~~~eL~e~A~~~~eg~~lt~~Gal~~~tg~~tgRsp~dk~iv~~~~~~~~i~w~~~n~~~~~e~f~~l~~~~~ 81 (524)
T 1ii2_A 2 PTIHRNLLSPELVQWALKIEKDSRLTARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDWGKVNMKLSEESFARVRKIAK 81 (524)
T ss_dssp CEEEESCCHHHHHHHHHHHCTTCEECTTSCEEECCTTCSSBCGGGEEEECCHHHHTTSCBTTTBCEECHHHHHHHHHHHH
T ss_pred CeeEeCCCHHHHHHHHHHhCCCcEEcCCCCEEEecCcccCCCcCceEEeCCCCCccccccCcCcccCCHHHHHHHHHHHH
Confidence 57999999999999999999997799999999999999999999999999999999999997 44331
Q ss_pred -----cc-EEEEEeeecCCCCCeEEEEEEecccchHHHHhhcccCCChHhhccCCCCCEEEEEcCCCCCCccCCCCCccc
Q 011235 209 -----VQ-VFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSST 282 (490)
Q Consensus 209 -----~~-lyv~D~~vG~d~~~~i~vRvit~~a~~alf~~NLf~rp~~~e~~~~~~pD~tI~~ap~f~~~~~~~g~~s~~ 282 (490)
++ |||+|+++|+||+|+++||+|++++||+||++|||+||.++|+++|++|||+||++|+|.++++.+|++|++
T Consensus 82 ~~l~~k~~l~v~d~~~G~d~~~~~~vrvit~~a~~~lf~~nl~~rp~~~e~~~fg~pd~~i~~~p~f~~~~~~~G~~s~~ 161 (524)
T 1ii2_A 82 EFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMRDMLIVPTPEELATFGEPDYVIYNAGECKADPSIPGLTSTT 161 (524)
T ss_dssp HHHHTSSEEEEEEEEECSSTTTCEEEEEEESSHHHHHHHHHHSBCCCHHHHHTCCSCSEEEEEETTSCCCTTSTTCCSSC
T ss_pred HHHcCCCcEEEEeeeeecChhhcccEEEEECHHHHHHHHHHhhccCCHHHhcccCCCCEEEEeCCCccCCcccCCcCccc
Confidence 54 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEcccchhhhHHHHHHHHHHhcccCCeeeeccccccCCCCCEEEEEeCCCCCcccccccCCCceeecC
Q 011235 283 SIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTDHNRYLIGDD 362 (490)
Q Consensus 283 ~i~id~~~~~~~I~Gt~Y~GEmKK~iltl~~~~l~~~G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~~~~~~lI~DD 362 (490)
+|++|+++++++|+||+|+|||||++||+||++++++|+||||||+|++++|++++||||||||||||+++++|.||+||
T Consensus 162 ~v~~~~~~~~~~I~Gt~Y~GemKK~~ftl~n~~~~~~g~L~~H~san~g~~g~~~~ffGlSGtGKTTLs~d~~r~lIgDD 241 (524)
T 1ii2_A 162 CVALNFKTREQVILGTEYAGEMKKGILTVMFELMPQMNHLCMHASANVGKQGDVTVFFGLSGTGKTTLSADPHRNLIGDD 241 (524)
T ss_dssp EEEEETTTTEEEEESCCCTHHHHHHHHHHHHHHHHHTTCEEESEEEEECTTCCEEEEECCTTSSHHHHHCCTTSEEEESS
T ss_pred EEEEECCCCeEEEECCcchHHHHHHHHHHHHHHHHHCCcEeecceeeeCCCCCEEEEEccCCcchhhhhhccCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCccccCcceEEeecCCCCCCCcchhhcccccceeeeeEEcCCCCeeecCCCCccccceEEEecccccCCCCCC
Q 011235 363 EHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPC 442 (490)
Q Consensus 363 ~~~wsd~Gvfn~EgGcYaK~~dLs~e~eP~I~~Ai~f~ailENV~lD~~~~~vdf~d~s~T~NtRa~yPi~~i~N~~~~~ 442 (490)
+|+|+++|+||+|+|||+||+||++|.||+||+|++|++|+|||+||++++.|||+|+++|+|+|++|||++|+|+..++
T Consensus 242 e~~w~~~Gvfn~E~G~y~K~idl~~e~eP~I~~ai~~~~ilENV~~d~~g~~vd~~d~s~t~NtR~~~P~~~i~n~~~~~ 321 (524)
T 1ii2_A 242 EHVWTDRGVFNIEGGCYAKAIGLNPKTEKDIYDAVRFGAVAENCVLDKRTGEIDFYDESICKNTRVAYPLSHIEGALSKA 321 (524)
T ss_dssp CEEECSSCEEESCSEEEEECTTCCTTTCHHHHHTCSTTCEEESCCBCTTTCSBCTTCCSSCSCCEEEEEGGGSTTCCSSC
T ss_pred hhhccCCCccccccceEEEecCCCcccChhHHHhcCcCceEEEEEECCCCCcccCCCCcccCCceEEEEHHHCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCccEEEEEEeecCCCCCCccccCHHHHHHHHHhccccccccccc
Q 011235 443 VGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVCAMSL 489 (490)
Q Consensus 443 ~~g~P~~IIfLt~DafgvLPPVskLt~eQA~y~FlsGytakvagte~ 489 (490)
+++||++||||+||+|||||||+|||++||||||++|||||+||||.
T Consensus 322 ~~g~P~~Iifl~~Da~gvlPPVskLt~eqa~y~F~sG~Tak~agtE~ 368 (524)
T 1ii2_A 322 IAGHPKNVIFLTNDAFGVMPPVARLTSAQAMFWFVMGYTANVPGVEA 368 (524)
T ss_dssp EECCEEEEEEEECCTTSCSCSEEEECHHHHHHHHHHCEEEECSSSBT
T ss_pred cCCCCceEEEEEcCCcCCCCCcEecCHHHHHHHHhcCcccccccccc
Confidence 89999999999999999999999999999999999999999999994
No 2
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=100.00 E-value=1.3e-107 Score=870.98 Aligned_cols=357 Identities=46% Similarity=0.752 Sum_probs=341.3
Q ss_pred CcccchhccCccc-ceeEEcCCHHHHHHHHHh---hc--CCeEEecCCceEEecCCeecCCCCCeeeecCCCccccccc-
Q 011235 129 TPTISVSDSSLKF-THVLYNLSPAELYEQAIK---YE--QGSFIASSGALATLSGAKTGRSPRDKRVVKDETTEHELWW- 201 (490)
Q Consensus 129 s~~~~l~~~gl~~-~~v~~Nls~~eL~e~A~~---~~--~g~~~t~~GaL~~~tG~~TGRSpkdk~iV~~~~t~~~i~w- 201 (490)
|-...|..+||.+ .+|+||++.+||||+|++ ++ +| .++++|+|++.||++|||||+|||||+++.+++ |||
T Consensus 2 ~~~~~~~~~g~~~~~~i~~n~~~~~L~e~a~~~~~~~~~eg-~l~~~Gal~~~tg~~tgRsp~dk~iv~~~~~~~-i~w~ 79 (532)
T 1ytm_A 2 SLSESLAKYGITGATNIVHNPSHEELFAAETQASLEGFEKG-TVTEMGAVNVMTGVYTGRSPKDKFIVKNEASKE-IWWT 79 (532)
T ss_dssp CHHHHHHHHTCCCCSEEEESCCHHHHHHHHTCTTCCGGGCE-EECTTSSEEECCTTCCSBCGGGEEEECSGGGTT-SCCC
T ss_pred ccccchHhcCCCCCCeEEECCCHHHHHHHHHhhccCCcccc-eecCCCCEEEcCCCcccCCCCceEEeCCCCccc-cccc
Confidence 3345789999986 799999999999999998 76 77 599999999999999999999999999999999 999
Q ss_pred ----cC----cCcc--------------cccEEEEEeeecCCCCCeEEEEEEecccchHHHHhhcccCCChHhhccCCCC
Q 011235 202 ----GK----MKNH--------------DVQVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTP 259 (490)
Q Consensus 202 ----g~----~~e~--------------~~~lyv~D~~vG~d~~~~i~vRvit~~a~~alf~~NLf~rp~~~e~~~~~~p 259 (490)
++ ++++ .++|||+|+++|+|++|+++||+|++++||+||++|||+||..+|+++| +|
T Consensus 80 ~~~~~~~n~~~~~e~f~~l~~~~~~~l~~k~l~v~d~~~G~d~~~~~~vr~it~~a~~~lf~~nLf~rp~~ee~~~f-~p 158 (532)
T 1ytm_A 80 SDEFKNDNKPVTEEAWAQLKALAGKELSNKPLYVVDLFCGANENTRLKIRFVMEVAWQAHFVTNMFIRPTEEELKGF-EP 158 (532)
T ss_dssp CSSSCCSCEEECHHHHHHHHHHHHHHHSSSEEEEEEEEESSCTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHTTC-CC
T ss_pred ccccCcccCCCCHHHHHHHHHHHHHHHcCCCEEEEEEEeeCChhhceeEEEEeCHHHHHHHHHHhccCCChHHhccC-CC
Confidence 55 3332 2789999999999999999999999999999999999999999999999 99
Q ss_pred CEEEEEcCC-CCCCccCCCCCcccEEEEecCCCeEEEEcccchhhhHHHHHHHHHHhcccCCeeeeccccccCCCC-CEE
Q 011235 260 DFTIYNAGQ-FPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDG-DVA 337 (490)
Q Consensus 260 D~tI~~ap~-f~~~~~~~g~~s~~~i~id~~~~~~~I~Gt~Y~GEmKK~iltl~~~~l~~~G~L~~H~sani~~~g-~~~ 337 (490)
||+||++|+ |.++++.+|++|+++|++|+++++++|+||+|+|||||++||+||++++++|+||||||||++++| +++
T Consensus 159 d~~i~~~p~~f~~~~~~~G~~s~~~v~~n~~~~~~~I~gt~Y~GemKK~~ftl~n~~~~~~G~L~~H~sanv~~~g~~~~ 238 (532)
T 1ytm_A 159 DFVVLNASKAKVENFKELGLNSETAVVFNLAEKMQIILNTWYGGEMKKGMFSMMNFYLPLQGIAAMHCSANTDLEGKNTA 238 (532)
T ss_dssp SEEEEEETTCCCTTTTTTTCSSSCEEEEETTTTEEEEESCCCTTHHHHHHHHHHHHHTGGGTCEEEEEEEEEETTSCSEE
T ss_pred CEEEEECCccccCCcccCCCCCceEEEEECCCCEEEEeCCccCchhhHhHHHHHHHHHHHCCcEeecCeeeeCCCCCeEE
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999888 999
Q ss_pred EEEeCCCCCcccccccCCCceeecCceeecCCCccccCcceEEeecCCCCCCCcchhhcccccceeeeeEEcCCCCeeec
Q 011235 338 LFFGLSGTGKTTLSTDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDY 417 (490)
Q Consensus 338 lffGlSGtGKTTLs~~~~~~lI~DD~~~wsd~Gvfn~EgGcYaK~~dLs~e~eP~I~~Ai~f~ailENV~lD~~~~~vdf 417 (490)
+||||||||||||+++++|.||+||+|+|+++||||+|+|||+||+||+++.||+||++++|++|+|||++|+++ +|||
T Consensus 239 ~ffGlSGtGKTTLs~d~~r~lIgDDe~~w~~~Gvfn~EgGcyak~i~Ls~~~EP~i~~ai~~~ailENV~~d~~g-~vd~ 317 (532)
T 1ytm_A 239 IFFGLSGTGKTTLSTDPKRLLIGDDEHGWDDDGVFNFEGGCYAKVINLSKENEPDIWGAIKRNALLENVTVDANG-KVDF 317 (532)
T ss_dssp EEECCTTSSHHHHHCCTTEEEEESSEEEECSSCEEESCSEEEEECTTCCTTTCHHHHHHCSTTCEEESCEECTTC-CEET
T ss_pred EEEecCCCCHHHHhhCcCCCEEECCeeeeccCCceeccceEEEEeccCCCccChhHHHhcCcCceeeeeEECCCC-cccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 9999
Q ss_pred CCCCccccceEEEecccccCCC-CCCCCCCccEEEEEEeecCCCCCCccccCHHHHHHHHHhccccccccccc
Q 011235 418 SDKSVTENTRAAYPIEYIPNAK-IPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVCAMSL 489 (490)
Q Consensus 418 ~d~s~T~NtRa~yPi~~i~N~~-~~~~~g~P~~IIfLt~DafgvLPPVskLt~eQA~y~FlsGytakvagte~ 489 (490)
+|+++|+|+|++|||++|+|+. .+++++||++||||+||+|||||||+|||++||||||++|||||+||||.
T Consensus 318 ~d~s~t~NtR~~~P~~~i~n~~~~~~~~g~P~~IifL~~DafgvlPPvsklt~~qa~y~FlsG~tak~aGtE~ 390 (532)
T 1ytm_A 318 ADKSVTENTRVSYPIFHIKNIVKPVSKAPAAKRVIFLSADAFGVLPPVSILSKEQTKYYFLSGFTAKLAGTER 390 (532)
T ss_dssp TCCSSCSCCEEEEEGGGSSSBCCSSSEESCEEEEEEEECCTTSCSCSEEECCHHHHHHHHHHCEEEECTTSBT
T ss_pred CCCcccccceEEEEHHHCCCcccCCCcCCCCceEEEEecCCCCCCCCceecCHHHHHHHHHcCCccccccccc
Confidence 9999999999999999999998 78888999999999999999999999999999999999999999999984
No 3
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=100.00 E-value=2.5e-107 Score=867.68 Aligned_cols=352 Identities=47% Similarity=0.786 Sum_probs=337.1
Q ss_pred ccchhccCccc-ceeEEcCCHHHHHHHHHhhc-----CCeEEecCCceEEecCCeecCCCCCeeeecCCCccccccccC-
Q 011235 131 TISVSDSSLKF-THVLYNLSPAELYEQAIKYE-----QGSFIASSGALATLSGAKTGRSPRDKRVVKDETTEHELWWGK- 203 (490)
Q Consensus 131 ~~~l~~~gl~~-~~v~~Nls~~eL~e~A~~~~-----~g~~~t~~GaL~~~tG~~TGRSpkdk~iV~~~~t~~~i~wg~- 203 (490)
...|..+||.. .+|+||+++++|+|+|++++ +| .++++|+|++.||++|||||+|||||+++.+++.|||++
T Consensus 9 ~~~~~~~gi~~~~~v~~n~~~~~L~e~al~~~~~~~eeg-~l~~~Gal~~~tg~~tgRsp~dk~Iv~~~~~~~~i~w~~~ 87 (540)
T 2olr_A 9 PQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERG-VLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADK 87 (540)
T ss_dssp HHHHHHTTCCCCCCEEESCCHHHHHHHHHCTTCCGGGCE-EECTTSCEEECCCSCSSCCGGGEEEECSTTTTTTSCCTTS
T ss_pred ccchhhcCCCCCCeEEeCCCHHHHHHHHHhcCCCccccc-eecCCCCEEEcCCCcccCCCCceEEeCCCCCccccccccc
Confidence 44789999986 79999999999999999988 77 599999999999999999999999999999999999976
Q ss_pred ---------cCccc--------------ccEEEEEeeecCCCCCeEEEEEEecccchHHHHhhcccCCChHhhccCCCCC
Q 011235 204 ---------MKNHD--------------VQVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPD 260 (490)
Q Consensus 204 ---------~~e~~--------------~~lyv~D~~vG~d~~~~i~vRvit~~a~~alf~~NLf~rp~~~e~~~~~~pD 260 (490)
++++. ++|||+|+++|+|++|+++||+|++++||+||++|||+||+.+|+++| +||
T Consensus 88 ~~~~~~N~~~~~e~f~~l~~~~~~~l~~k~lyv~d~~~G~d~~~~~~vr~ite~a~~alf~~nLf~rp~~ee~~~~-~pd 166 (540)
T 2olr_A 88 GKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGF-KPD 166 (540)
T ss_dssp SSSCCSCEEECHHHHHHHHHHHHHHHTTSCEEEEEEEESSSTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHHTC-CCS
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHcCCCEEEEeeeeeCChhhceeEEEEeCHHHHHHHHHHhhcCCChHHhcCC-CCC
Confidence 44332 789999999999999999999999999999999999999999999999 999
Q ss_pred EEEEEc-----CCCCCCccCCCCCcccEEEEecCCCeEEEEcccchhhhHHHHHHHHHHhcccCCeeeeccccccCCCCC
Q 011235 261 FTIYNA-----GQFPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGD 335 (490)
Q Consensus 261 ~tI~~a-----p~f~~~~~~~g~~s~~~i~id~~~~~~~I~Gt~Y~GEmKK~iltl~~~~l~~~G~L~~H~sani~~~g~ 335 (490)
|+||++ |+|.++ |++++++|++|+++++++|+||+|+|||||++||+|||+++++|+||||||||++++|+
T Consensus 167 ~~i~~~~~~~~p~f~~~----G~~s~~~v~~~~~~~~~~I~Gt~Y~GemKK~~ftl~n~~l~~~G~L~mH~sanvg~~g~ 242 (540)
T 2olr_A 167 FIVMNGAKCTNPQWKEQ----GLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGD 242 (540)
T ss_dssp EEEEEETTCCCTTTTTT----TCSSSCEEEEETTTTEEEEESCCCTHHHHHHHHHHHHHHTGGGTCEEECEEEEECTTSC
T ss_pred EEEEEeccCCCCCcccC----CccCccEEEEEccCCeEEEeCCcCchHhhhhHHHHhHHHHHHCCcEeecceeeeCCCCC
Confidence 999999 999887 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCcccccccCCCceeecCceeecCCCccccCcceEEeecCCCCCCCcchhhcccccceeeeeEEcCCCCee
Q 011235 336 VALFFGLSGTGKTTLSTDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGAVLENVVFDEHTREV 415 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~~~~~~lI~DD~~~wsd~Gvfn~EgGcYaK~~dLs~e~eP~I~~Ai~f~ailENV~lD~~~~~v 415 (490)
+++||||||||||||+++++|.||+||+|+|+++||||+|+|||+||+||++|.||+||+|++|++|+|||++|++++.
T Consensus 243 ~~lffGlSGtGKTTLs~d~~r~lIgDDe~~w~~~Gvfn~EgGcyak~i~Ls~e~EP~i~~ai~~~aileNV~~d~~g~~- 321 (540)
T 2olr_A 243 VAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDGTI- 321 (540)
T ss_dssp EEEEECSTTSSHHHHHCCTTSEEEESSCEEEETTEEEESCSEEEEECTTCCTTTSHHHHHTCSTTCEEESCEECTTSCE-
T ss_pred EEEEEccCCCCHHHHhcCcCCcEEecCceeecCCCcccccCceEEEeccCCcccChhHHHhcCccceeeeeeEcCCCCe-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred ecCCCCccccceEEEecccccCCCCC-CCCCCccEEEEEEeecCCCCCCccccCHHHHHHHHHhccccccccccc
Q 011235 416 DYSDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVCAMSL 489 (490)
Q Consensus 416 df~d~s~T~NtRa~yPi~~i~N~~~~-~~~g~P~~IIfLt~DafgvLPPVskLt~eQA~y~FlsGytakvagte~ 489 (490)
||+|.++|+|||++||+++|+|+..+ ++++||++||||+||+||+||||+|||++||||||+||||||+||||.
T Consensus 322 df~d~s~t~NtR~~yPi~~i~n~~~~~~~~g~P~~IifLt~Da~gvlPPVskLt~eqA~y~FlsG~tak~aGtE~ 396 (540)
T 2olr_A 322 DFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHFLSGFTAKLAGTER 396 (540)
T ss_dssp ETTCCSSCSCCEEEEEGGGSSSBCCSSSEESCEEEEEEEECCTTSCSCSEEECCHHHHHHHHHHCEEEEETTGGG
T ss_pred ecCCCCccccceEEEEHHHCCCcCCccccCCCCCEEEEEecCCcCCCCCceeCCHHHHHHHHHhcchhhhhcccc
Confidence 99999999999999999999999877 788999999999999999999999999999999999999999999985
No 4
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=100.00 E-value=3.5e-99 Score=805.65 Aligned_cols=355 Identities=44% Similarity=0.770 Sum_probs=332.4
Q ss_pred chhccCccc-ceeEEcCCHHHHHHHHHhhcCCeEEecCCceEEecCCeecCCCCCeeeecCCCccccccccC----cCcc
Q 011235 133 SVSDSSLKF-THVLYNLSPAELYEQAIKYEQGSFIASSGALATLSGAKTGRSPRDKRVVKDETTEHELWWGK----MKNH 207 (490)
Q Consensus 133 ~l~~~gl~~-~~v~~Nls~~eL~e~A~~~~~g~~~t~~GaL~~~tG~~TGRSpkdk~iV~~~~t~~~i~wg~----~~e~ 207 (490)
.|..+||.. .+|+||++.+||+|+|+++++|. +++.|+|++.||++|||||+|||||+++.+++.+|||+ +.++
T Consensus 3 ~~~~~~l~~~~~v~~n~~~~~l~e~a~~~g~g~-~~~~g~~~~~tg~~tgRsp~~~fIv~~~~~~~~~~w~~~n~~~~~e 81 (529)
T 1j3b_A 3 RLEALGIHPKKRVFWNTVSPVLVEHTLLRGEGL-LAHHGPLVVDTTPYTGRSPKDKFVVREPEVEGEIWWGEVNQPFAPE 81 (529)
T ss_dssp CCGGGTCCCSSCEEESCCHHHHHHHHHHTTSCE-ECTTSCEEECCTTCCSCCGGGEEEECCTTTTTTSCBTTTBEEECHH
T ss_pred chhhccCCCCCeEEECCChHHHHHHHHHcCCCE-ECCCCCEEeCCCCcccCCCCceEEeCCCCcCCccccccccCcCCHH
Confidence 478899985 79999999999999999999995 89999999999999999999999999999999999988 2322
Q ss_pred --------------cccEEEEEeeecCCCCCeEEEEEEecccchHHHHhhcccCCC----hHhhccCCCCCEEEEEcCCC
Q 011235 208 --------------DVQVFVNDQFLNWDPQNRVKVRIVSARAYHSLFMHNMCIRPT----PEELENFGTPDFTIYNAGQF 269 (490)
Q Consensus 208 --------------~~~lyv~D~~vG~d~~~~i~vRvit~~a~~alf~~NLf~rp~----~~e~~~~~~pD~tI~~ap~f 269 (490)
.++|||+|+++|+|+++++++|+||+++||+||++|||+||. .+|+++| +|||+||++|+|
T Consensus 82 ~f~~l~~~~~~~m~gr~lyV~~~~~G~~~~~~~~~~~itd~a~~~lf~~~m~~rp~~~~~~~el~~~-~pd~~i~~~p~f 160 (529)
T 1j3b_A 82 AFEALYQRVVQYLSERDLYVQDLYAGADRRYRLAVRVVTESPWHALFARNMFILPRRFGNDDEVEAF-VPGFTVVHAPYF 160 (529)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEEEEECSSTTTCEEEEEEESCHHHHHHHHHHSBCGGGGC------CC-CCSEEEEEETTC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEeeeCCcccCeeEEEEcChHHHHHHHHHHhcccCcccchhhhccC-CCCEEEEeCCCc
Confidence 178999999999999999999999999999999999999998 7888999 999999999999
Q ss_pred CCCccCCCCCcccEEEEecCCCeEEEEcccchhhhHHHHHHHHHHhcccCCeeeeccccccCCCCCEEEEEeCCCCCccc
Q 011235 270 PCNRYTHYMTSSTSIDLNLARREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTT 349 (490)
Q Consensus 270 ~~~~~~~g~~s~~~i~id~~~~~~~I~Gt~Y~GEmKK~iltl~~~~l~~~G~L~~H~sani~~~g~~~lffGlSGtGKTT 349 (490)
.++++.+|++++++|++|+++++++|+|++|+|||||++||+||++++++|+|+|||++|++.+|++++|||||||||||
T Consensus 161 ~~~~~~~G~~s~~~i~~~~~~~~i~i~Gt~Y~Ge~KK~~l~i~~~~~~~~G~L~~H~sa~~~~~g~~~~ffGlSGtGKTt 240 (529)
T 1j3b_A 161 QAVPERDGTRSEVFVGISFQRRLVLIVGTKYAGEIKKSIFTVMNYLMPKRGVFPMHASANVGKEGDVAVFFGLSGTGKTT 240 (529)
T ss_dssp CCCHHHHCCSSSCEEEEETTTTEEEEESCCCTHHHHHHHHHHHHHHGGGGTCEEEECEEEECTTCCEEEEEECTTSCHHH
T ss_pred ccCcccCCCCCceEEEEECccCEEEEeCCccCcchHHHHHHHHHHHHHHCCeEeccceeeeCCCCcEEEEEccccCChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeecCceeecCCCccccCcceEEeecCCCCCCCcchhhcc-cccceeeeeEEcCCCCeeecCCCCccccceE
Q 011235 350 LSTDHNRYLIGDDEHCWGDNGVSNIEGGCYAKCIDLSREKEPDIWNAI-KFGAVLENVVFDEHTREVDYSDKSVTENTRA 428 (490)
Q Consensus 350 Ls~~~~~~lI~DD~~~wsd~Gvfn~EgGcYaK~~dLs~e~eP~I~~Ai-~f~ailENV~lD~~~~~vdf~d~s~T~NtRa 428 (490)
|++++++.+|+||+|+|+++|+||+|+|||+||+||+++.||+||+++ +|++|+|||++|++++.|+|++.++|+|+|+
T Consensus 241 Ls~~p~r~lIgDD~~~w~~~Gv~n~E~G~y~k~~~ls~~~eP~i~~ai~~~~~ileNV~~d~dg~~v~~~~~~~t~N~R~ 320 (529)
T 1j3b_A 241 LSTDPERPLIGDDEHGWSEDGVFNFEGGCYAKVIRLSPEHEPLIYKASNQFEAILENVVVNPESRRVQWDDDSKTENTRS 320 (529)
T ss_dssp HTCBTTBCEEESSEEEECSSCEEESCSEEEEECTTCCTTTCHHHHHHHSSTTCEEESCEECTTTCCEETTCCSSCSCCEE
T ss_pred HhhccCcceEECchhhhccCceecccCceEEEecCCCCcchHHHHHHhCcCCceeEEeEECCCCCcccCCCCCCCCCccE
Confidence 999999999999999999999999999999999999999999999999 9999999999999888999999999999999
Q ss_pred EEecccccCCCCCCCCCCccEEEEEEeecCCCCCCccccCHHHHHHHHHhccccccccccc
Q 011235 429 AYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVCAMSL 489 (490)
Q Consensus 429 ~yPi~~i~N~~~~~~~g~P~~IIfLt~DafgvLPPVskLt~eQA~y~FlsGytakvagte~ 489 (490)
+||++++||+..++.+++|++||||+||+||+||||++||++||||||+||||||+||||.
T Consensus 321 ~~P~~~~pn~~~~~~~g~P~~Iifl~~da~gvlPpV~~l~~~qa~~~f~sG~Tak~agtE~ 381 (529)
T 1j3b_A 321 SYPIAHLENVVESGVAGHPRAIFFLSADAYGVLPPIARLSPEEAMYYFLSGYTARVAGTER 381 (529)
T ss_dssp EEEGGGCSSBCTTSEECCEEEEEEEECCTTSCSCSEEEECHHHHHHHHHHCEEEEC-----
T ss_pred EEEHHHCCCCCCCCcCCCCCEEEEEEccCCCCCCCeecCCHHHHHHHHHcccccccccccc
Confidence 9999999999888888999999999999999999999999999999999999999999973
No 5
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A*
Probab=99.92 E-value=3.2e-23 Score=221.15 Aligned_cols=330 Identities=19% Similarity=0.213 Sum_probs=238.5
Q ss_pred ccceeEEcC-CHHH---HHHHHHhhcCCeEEecC----CceEEecC-CeecCCCCCeeeecCCCccc--cc---------
Q 011235 140 KFTHVLYNL-SPAE---LYEQAIKYEQGSFIASS----GALATLSG-AKTGRSPRDKRVVKDETTEH--EL--------- 199 (490)
Q Consensus 140 ~~~~v~~Nl-s~~e---L~e~A~~~~~g~~~t~~----GaL~~~tG-~~TGRSpkdk~iV~~~~t~~--~i--------- 199 (490)
.|..||+.- |.+| |.+++++. |+ +... +...+.|. .=.+|.-..+||+-+...+. ..
T Consensus 24 ~Pd~I~icdGS~eE~~~l~~~~v~~--G~-~~~L~k~~n~~l~~sdp~DvARve~rTfI~t~~~~dagp~n~~~g~~~~~ 100 (608)
T 2faf_A 24 RPREVLLCDGSEEEGKELLRGLQDD--GV-LHPLPKYDNCWLARTDPRDVARVESKTVLVTPEQSDAVPPPPPSGGPPQL 100 (608)
T ss_dssp CCSEEEECCCCHHHHHHHHHHHHHT--TS-EEECTTSBSCEEECCCTTCSSCCGGGEEEECSSGGGTSCCCCTTCCCCCS
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHhC--CC-eeecCCCCCceeccCChhhcceeccceEEecCchhhcCCCCccccccccc
Confidence 378898855 5554 55566654 54 3222 23333333 33566666778887544332 22
Q ss_pred -cccC---cCcc----------cccEEEEEeeecC-CCCCeEEEEEEecccchHHHHhhcccCCChHhhccCCCCCEE--
Q 011235 200 -WWGK---MKNH----------DVQVFVNDQFLNW-DPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFT-- 262 (490)
Q Consensus 200 -~wg~---~~e~----------~~~lyv~D~~vG~-d~~~~i~vRvit~~a~~alf~~NLf~rp~~~e~~~~~~pD~t-- 262 (490)
.|-. |..+ -|.|||+-=.+|- ...+....-.||+++|..+.|+-|. |-..+.++..+. +|+
T Consensus 101 ~nw~~p~e~~~~l~~~f~G~M~GRTMYViPFsMGP~gsp~s~~GVeiTDS~YVv~smriMt-R~g~~v~~~lg~-~Fv~~ 178 (608)
T 2faf_A 101 GNWMSPNAFQAAVQERFPGCMAGRPLYVIPFSMGPPTSPLAKLGVQVTDSPYVVLSMRIMT-RVGPAVLQRLDD-DFVRC 178 (608)
T ss_dssp CCEECHHHHHHHHHHHSTTTTTTSEEEEEEEEESCTTCTTCEEEEEEESCHHHHHHHHHHS-EESHHHHTTCCS-CCEEE
T ss_pred cccCCHHHHHHHHHHhCCcccCCCEEEEEeeecCCCCCCcccceeEeeCCHHHHHHHHHHH-hcCHHHHHHhhC-cccee
Confidence 3533 2211 2899998777776 7788888889999999999887654 555566665555 775
Q ss_pred EEEcCC-----------CCCCccCCCCCcccEEEEecCCCeEEEEcccchhh---hHHH-HHHHHHHhcccCCeeeeccc
Q 011235 263 IYNAGQ-----------FPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGE---MKKG-LFSVMHYLMPKRQILSLHSG 327 (490)
Q Consensus 263 I~~ap~-----------f~~~~~~~g~~s~~~i~id~~~~~~~I~Gt~Y~GE---mKK~-iltl~~~~l~~~G~L~~H~s 327 (490)
|++... |+||+ .++.|+.+++.++|+..|+.|.|+ -||. .|+++.++..++|+|+.|+-
T Consensus 179 vHSvG~pl~~~~~~~~~WPcn~------~~~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALRiAs~~ar~EGWLAEHMl 252 (608)
T 2faf_A 179 LHSVGRPLPLTEPLVSSWPCDP------SRVLVAHIPSERRIVSFGSGYGGNSLLGKKCFALRIASRMAQQQGWLAEHML 252 (608)
T ss_dssp EEECSCCSSCSSCCSTTCCCCG------GGCEEEEEGGGTEEEEESCCSHHHHCTCCCCCTTHHHHHHHHHHTCEEESCE
T ss_pred ecccCCcCCcccccCCCCccCC------CccEEEEECCCCeEEEecCCcCcchhhhhHHHHHHHHHHHhhhcChHHHHHH
Confidence 444432 33321 238999999999999999999999 5655 58999999999999999997
Q ss_pred cccC---CCCCEEEEE--eCCCCCcccccc-c---CCCc--eeecCceeec--CCCcc---ccCcceEEeecCCCCCCCc
Q 011235 328 CNMG---KDGDVALFF--GLSGTGKTTLST-D---HNRY--LIGDDEHCWG--DNGVS---NIEGGCYAKCIDLSREKEP 391 (490)
Q Consensus 328 ani~---~~g~~~lff--GlSGtGKTTLs~-~---~~~~--lI~DD~~~ws--d~Gvf---n~EgGcYaK~~dLs~e~eP 391 (490)
. ++ .+|+...|. ++|+||||+|++ . ++-+ .|+||+.-+- .||.. |.|.|+|.++.+.+.+..|
T Consensus 253 I-lgvt~p~g~~~yiaaAfPSacGKTnlAMl~p~~~gwkve~vGDDIawm~~~~dG~l~AiNPE~GfFGvapGt~~~tnP 331 (608)
T 2faf_A 253 I-LGVTSPSGEKRYMAAAFPSACGKTNLAMMTPSLPGWRIHCVGDDIAWMKFDDEGRLRAINPERGFFGVAPGTSSRTNP 331 (608)
T ss_dssp E-EEEECTTSCEEEEEEECSSCTTSCCGGGCCCSSTTCEEEEEESSCEEEEECTTSBEEEECCCSEEEEECTTCCTTTCH
T ss_pred H-heecCCCCcEEEEEEecccccchhhHhhcCCCCCCceeEEeecceeeeEECCCCcEEEecCCCCeeEecCCCCCCcCH
Confidence 4 43 567764444 599999999999 2 2333 7999996543 78953 7899999999999999999
Q ss_pred chhhcccccceeeeeEEcCCCCeeecCCCCcc-------------------------ccceEEEecccccCCC--CCCCC
Q 011235 392 DIWNAIKFGAVLENVVFDEHTREVDYSDKSVT-------------------------ENTRAAYPIEYIPNAK--IPCVG 444 (490)
Q Consensus 392 ~I~~Ai~f~ailENV~lD~~~~~vdf~d~s~T-------------------------~NtRa~yPi~~i~N~~--~~~~~ 444 (490)
.++++++-.+|++||.++++ +.|.|++...+ .|+|.+.|+...|++. .++..
T Consensus 332 ~am~tl~~n~IFTNVa~t~d-G~v~WeG~~~~~~p~~~~~dw~G~~w~~~~g~paaHpNsRft~p~~qcp~id~~we~p~ 410 (608)
T 2faf_A 332 NAMATIARNTIFTNVGLRSD-GGVYWDGLDEPTEPGVTYTSWLGKPWKHGDPEPCAHPNSRFCAPADQCPIMDPRWDDPE 410 (608)
T ss_dssp HHHHHTSBSCEEESCEEETT-SCEECTTCCCCCCTTCCEECTTSSEECTTCSSCSSCTTCEEEEEGGGCTTBCTTTTCTT
T ss_pred HHHHHhccCceeeeeEEcCC-CceecCCCCCCCCCCccccccCCCccCCCCCCcCcCCccceEeEHhhCCccCccccCCC
Confidence 99999988999999999986 47888866543 8999999999999985 44555
Q ss_pred CCccEEEEEEeecCCCCCCccccCHHHHHHHHHhcccccc
Q 011235 445 PHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALV 484 (490)
Q Consensus 445 g~P~~IIfLt~DafgvLPPVskLt~eQA~y~FlsGytakv 484 (490)
|.|++.|++.-++...+|+|......|.--+ .|-|-..
T Consensus 411 GVpIsaiiFggRR~~~vPlV~ea~~W~hGV~--~Gasm~S 448 (608)
T 2faf_A 411 GVPIDAIIFGGRRPRGVPLVVEAFGWRHGVF--MGSAMRS 448 (608)
T ss_dssp CEEEEEEEEEECCSSSSCSEEECSSHHHHHH--HHHTCBC
T ss_pred CceEEEEEEcccCCCCCCcEEEccCchhhhh--hhchhcc
Confidence 7787666666344667899999987777655 5555443
No 6
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum}
Probab=99.91 E-value=5.6e-23 Score=219.61 Aligned_cols=335 Identities=16% Similarity=0.183 Sum_probs=239.2
Q ss_pred ccceeEEcC-CHHH---HHHHHHhhcCCeEEecC------CceEEecC-CeecCCCCCeeeecCCCcc--ccccccC---
Q 011235 140 KFTHVLYNL-SPAE---LYEQAIKYEQGSFIASS------GALATLSG-AKTGRSPRDKRVVKDETTE--HELWWGK--- 203 (490)
Q Consensus 140 ~~~~v~~Nl-s~~e---L~e~A~~~~~g~~~t~~------GaL~~~tG-~~TGRSpkdk~iV~~~~t~--~~i~wg~--- 203 (490)
.|..||+.- |.+| |.+++++. |+ +... +...+.|. .=.+|.-..+||+-+...+ ....|-.
T Consensus 32 ~Pd~I~icdGS~eE~~~l~~~~v~~--G~-~~~L~~~k~~n~~l~~sdp~DvARve~rTfI~t~~~~dagptnnw~~p~e 108 (610)
T 2zci_A 32 QPEAVVFVDGSQAEWDRMAEDLVEA--GT-LIKLNEEKRPNSYLARSNPSDVARVESRTFICSEKEEDAGPTNNWAPPQA 108 (610)
T ss_dssp CCSEEEECCCCHHHHHHHHHHHHHT--TS-EEECCTTTSTTCEEECCCGGGSSCCGGGEEECCSSTTTTCTTSCCCCHHH
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHhC--CC-eeecCCCCCCceeecCCChhhcceeccceEEecCchhhcCCCcCccCHHH
Confidence 478998865 5554 55566654 54 3332 44455554 4466777778998754333 3334644
Q ss_pred cCcc----------cccEEEEEeeecC-CCCCeEEEEEEecccchHHHHhhcccCCChHhhccCCC-CCEE--EEEcCCC
Q 011235 204 MKNH----------DVQVFVNDQFLNW-DPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGT-PDFT--IYNAGQF 269 (490)
Q Consensus 204 ~~e~----------~~~lyv~D~~vG~-d~~~~i~vRvit~~a~~alf~~NLf~rp~~~e~~~~~~-pD~t--I~~ap~f 269 (490)
|..+ -|.|||+-=.+|- ...+....-.||+++|..+.|+-|. |-..+.++..+. .+|+ |.+...-
T Consensus 109 ~~~~l~~~f~G~M~GRTMYViPfsMGP~gsp~s~~GVeiTDS~YVv~smrIMt-R~g~~v~~~lg~~~~Fv~~vHSvG~p 187 (610)
T 2zci_A 109 MKDEMSKHYAGSMKGRTMYVVPFCMGPISDPDPKLGVQLTDSEYVVMSMRIMT-RMGIEALDKIGANGSFVRCLHSVGAP 187 (610)
T ss_dssp HHHHHHHHHTTTTTTSEEEEEEEEESCTTCSSCEEEEEEESCHHHHHHHHHHS-EESHHHHHHHTTTCCCEEEEEECSCC
T ss_pred HHHHHHHhCCcccCCCEEEEEeeecCCCCCCcccceeEeeCCHHHHHHHHHHH-hcCHHHHHHhCCCCCeeeeecccCCc
Confidence 2221 2899998777776 7788888889999999999888655 434444433332 4665 4444421
Q ss_pred CCCccCC---CCCcccEEEEecCCCeEEEEcccchhh---hHHH-HHHHHHHhcccCCeeeeccccccC---CCCCEEEE
Q 011235 270 PCNRYTH---YMTSSTSIDLNLARREMVILGTQYAGE---MKKG-LFSVMHYLMPKRQILSLHSGCNMG---KDGDVALF 339 (490)
Q Consensus 270 ~~~~~~~---g~~s~~~i~id~~~~~~~I~Gt~Y~GE---mKK~-iltl~~~~l~~~G~L~~H~sani~---~~g~~~lf 339 (490)
......+ ..+.++.|+.+++.++|+..|+.|.|+ -||. .|+++.++..++|+|+.|+-. ++ .+|+...|
T Consensus 188 l~~~~~dv~wPc~~~~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALRiAs~~ar~EGWLAEHMlI-lgvt~P~g~~~yv 266 (610)
T 2zci_A 188 LEPGQEDVAWPCNDTKYITQFPETKEIWSYGSGYGGNAILAKKCYALRIASVMAREEGWMAEHMLI-LKLINPEGKAYHI 266 (610)
T ss_dssp CCSSCCCCSSCCCSSCEEEEETTTTEEEEESCCSHHHHCTCCCCCTTHHHHHHHHHHTCEEECCEE-EEEECSSSCEEEE
T ss_pred CCCCCcCCCCCCCCceEEEEecCcCeEEEecCCcCcchhhhhHHHHHHHHHHHhhhcChHHHHHHH-heecCCCCcEEEE
Confidence 1110111 123468999999999999999999999 5655 589999999999999999974 43 56776444
Q ss_pred E--eCCCCCcccccc-c---CCCc--eeecCceeec--CCCcc--ccCcceEEeecCCCCCCCcchhhcc-cccceeeee
Q 011235 340 F--GLSGTGKTTLST-D---HNRY--LIGDDEHCWG--DNGVS--NIEGGCYAKCIDLSREKEPDIWNAI-KFGAVLENV 406 (490)
Q Consensus 340 f--GlSGtGKTTLs~-~---~~~~--lI~DD~~~ws--d~Gvf--n~EgGcYaK~~dLs~e~eP~I~~Ai-~f~ailENV 406 (490)
. ++||||||+|++ . ++-+ +|+||+.-+- .||++ |.|.|+|.++.+++.+..|.+++++ +-.+|++||
T Consensus 267 aaAfPSacGKTnlAMl~p~~~gwkve~vGDDIawm~~~~dGl~AiNPE~GfFGvapGt~~~tnP~am~~~~~~n~IFtNV 346 (610)
T 2zci_A 267 AAAFPSACGKTNLAMITPTIPGWTAQVVGDDIAWLKLREDGLYAVNPENGFFGVAPGTNYASNPIAMKTMEPGNTLFTNV 346 (610)
T ss_dssp EEECSSSHHHHHHHTCCCSSTTCEEEEEESSCEEEEECSSSEEEECCCSEEEEECTTCCTTTCHHHHHHHTTCCCEEESC
T ss_pred EEecccccchhhHhhcCCCCCCceeEEeecceeeEeeCCCceeEecCCCceeEecCCCCCCcCHHHHHHhccCCceEeee
Confidence 4 599999999999 2 2333 7999996543 78865 7799999999999999999999999 889999999
Q ss_pred EEcCCCCeeecCCCCc-----------------------cccceEEEecccccCCC--CCCCCCCccEEEEEEeecCCCC
Q 011235 407 VFDEHTREVDYSDKSV-----------------------TENTRAAYPIEYIPNAK--IPCVGPHPKNVILLACDAFGVL 461 (490)
Q Consensus 407 ~lD~~~~~vdf~d~s~-----------------------T~NtRa~yPi~~i~N~~--~~~~~g~P~~IIfLt~DafgvL 461 (490)
.++++ +.|.|++... +.|+|.+.|+...|++. .++..|.|++.|++.-++...+
T Consensus 347 a~t~d-G~v~WeG~~~~~p~~~~dw~G~~w~~~~~~paaHpNsRft~p~~qcp~i~~~we~p~GVpIsaiiFggRR~~~v 425 (610)
T 2zci_A 347 ALTDD-GDIWWEGMDGDAPAHLIDWMGNDWTPESDENAAHPNSRYCVAIDQSPAAAPEFNDWEGVKIDAILFGGRRADTV 425 (610)
T ss_dssp EEETT-SCEECTTCSSCCCSCEECTTSCEECTTCSSCSSCTTCEEEEEGGGCTTBCGGGGCTTCEECSEEEEECCCSSSS
T ss_pred EEcCC-CcccCCCCCCCCCCcccccCCCccCCCCCCcCcCCccceEeEHhhCCccCccccCCCCceEEEEEEcccCCCCC
Confidence 99986 4788887665 29999999999999985 3455677876666663336678
Q ss_pred CCccccCHHHHHHHHHhcccc
Q 011235 462 PPVSKLNLAQTMYHFISGYTA 482 (490)
Q Consensus 462 PPVskLt~eQA~y~FlsGyta 482 (490)
|+|.+....|.--+ .|-|-
T Consensus 426 PlV~ea~~W~hGV~--~Gasm 444 (610)
T 2zci_A 426 PLVTQTYDWEHGTM--VGALL 444 (610)
T ss_dssp CSEEECSSHHHHHH--HHHTC
T ss_pred CcEEEccCchhhhh--hhchh
Confidence 99999987777655 55543
No 7
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Probab=99.85 E-value=3.5e-20 Score=198.08 Aligned_cols=326 Identities=18% Similarity=0.211 Sum_probs=229.7
Q ss_pred ccceeEEcC-CH---HHHHHHHHhhcCCeEEec-CCceEEecCC-eecCCCCCeeeecCCCcc----------ccccccC
Q 011235 140 KFTHVLYNL-SP---AELYEQAIKYEQGSFIAS-SGALATLSGA-KTGRSPRDKRVVKDETTE----------HELWWGK 203 (490)
Q Consensus 140 ~~~~v~~Nl-s~---~eL~e~A~~~~~g~~~t~-~GaL~~~tG~-~TGRSpkdk~iV~~~~t~----------~~i~wg~ 203 (490)
.|..||+.- |. ..|.+++++.+.-..+.+ -+..++.|.. =..|.-..+||+-+...+ ....|-.
T Consensus 41 ~Pd~I~icdGS~eE~~~l~~~~ve~G~~~~L~k~pn~~l~~sdP~DvARve~rTfI~t~~~~da~p~~~~g~~~~nnwm~ 120 (624)
T 3moe_A 41 QPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNCWLALTDPRDVARIESKTVIITQEQRDTVPIPKSGQSQLGRWMS 120 (624)
T ss_dssp CCSEEEECCCCHHHHHHHHHHHHHTTSCEECTTSBSCEEECCCTTCCSCCGGGEEEECSSHHHHSCCCSSSCCSSCCEEC
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHcCCcccccCCCCCEEEeCChhhccccccceEEecCchhhcCCcccCCcCcccccCC
Confidence 478999865 55 346666665433222210 1333333332 345555556888654433 1234533
Q ss_pred ---cCcc----------cccEEEEEeeecC-CCCCeEEEEEEecccchHHHHhhcccCCChHhhccCCCCCEE--EEEcC
Q 011235 204 ---MKNH----------DVQVFVNDQFLNW-DPQNRVKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFT--IYNAG 267 (490)
Q Consensus 204 ---~~e~----------~~~lyv~D~~vG~-d~~~~i~vRvit~~a~~alf~~NLf~rp~~~e~~~~~~pD~t--I~~ap 267 (490)
|..+ -|.|||+-=.+|- ...+..-.-.||+++|..+.|+-|. |-..+.++..+..+|+ |+++.
T Consensus 121 p~e~~~~l~~~f~G~M~GRTMYViPFsMGP~GSp~s~~GVeiTDS~YVv~smrIMt-R~g~~vld~lg~~~Fv~clHSvG 199 (624)
T 3moe_A 121 EEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRIMT-RMGTSVLEALGDGEFIKCLHSVG 199 (624)
T ss_dssp HHHHHHHHHTTSTTTTTTSEEEEEEEEESCSSCTTCEEEEEEESCHHHHHHHHHHS-EESHHHHHHHTTCCCEEEEEECS
T ss_pred HHHHHHHHHhhCcccccCCeEEEEeeecCCCCCCccceeEEccCcHHHHHhHHHHh-hCCHHHHHhhcCCCeeeeecccC
Confidence 2111 2899998777776 6777777889999999999888655 4444444433344675 44443
Q ss_pred C-----------CCCCccCCCCCcccEEEEecCCCeEEEEcccchhh---hHHH-HHHHHHHhcccCCeeeecccc-cc-
Q 011235 268 Q-----------FPCNRYTHYMTSSTSIDLNLARREMVILGTQYAGE---MKKG-LFSVMHYLMPKRQILSLHSGC-NM- 330 (490)
Q Consensus 268 ~-----------f~~~~~~~g~~s~~~i~id~~~~~~~I~Gt~Y~GE---mKK~-iltl~~~~l~~~G~L~~H~sa-ni- 330 (490)
. |+||+ .++.|+.+++.++|+..|+.|.|+ -||. .|+++.++..++|||+.|+-. .|
T Consensus 200 ~pl~~~~~~v~~Wpcnp------~k~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALRiAS~~Ar~EGWLAEHMlIlgit 273 (624)
T 3moe_A 200 CPLPLKKPLVNNWACNP------ELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRIASRLAKEEGWLAEHMLILGIT 273 (624)
T ss_dssp CCSSCSSCCBTTBCCCG------GGCEEEEEGGGTEEEEESCCSHHHHCTCCCCCTTHHHHHHHHHHTCEEESCEEEEEE
T ss_pred CCCCCCCccCCCCCCCC------CceEEEEecccCeEEEecCCcCcchhhhHHHHHHHHHHHHhhhcccHHHhHHHheec
Confidence 2 22222 247899999999999999999999 7888 999999999999999999974 22
Q ss_pred CCCCCEEEEEe--CCCCCccccccc-C---CC--ceeecCceee--cCCCcc---ccCcceEEeecCCCCCCCcchhhcc
Q 011235 331 GKDGDVALFFG--LSGTGKTTLSTD-H---NR--YLIGDDEHCW--GDNGVS---NIEGGCYAKCIDLSREKEPDIWNAI 397 (490)
Q Consensus 331 ~~~g~~~lffG--lSGtGKTTLs~~-~---~~--~lI~DD~~~w--sd~Gvf---n~EgGcYaK~~dLs~e~eP~I~~Ai 397 (490)
+.+|++..|.| +|+||||.|++. | +- ..|+||+.-+ ++||.. |.|.|+|..+.|.+.+..|.+++++
T Consensus 274 ~P~G~~~yiaaAFPSaCGKTnlAMl~p~~~Gwkve~vGDDIAwm~~~~dG~l~AiNPE~GfFGvapGt~~~tnp~am~~l 353 (624)
T 3moe_A 274 NPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDAQGNLRAINPENGFFGVAPGTSVKTNPNAIKTI 353 (624)
T ss_dssp CTTSCEEEEEEECCTTSSHHHHHTCCCSSTTCEEEEEESSCEEEEECTTSBEEEECCCSEEEEECTTCSTTTCHHHHHHT
T ss_pred CCCCcEEEEEEEcccccccccHhhcCCCCCCceeEEecccEEEEEECCCccEEeecCCCCeeeecCCCCCccCHHHHHhh
Confidence 36788766655 999999999992 3 43 3799998643 679953 8999999999999999999999999
Q ss_pred cccceeeeeEEcCCCCee----------------ecCCC---------CccccceEEEecccccCCC--CCCCCCCccEE
Q 011235 398 KFGAVLENVVFDEHTREV----------------DYSDK---------SVTENTRAAYPIEYIPNAK--IPCVGPHPKNV 450 (490)
Q Consensus 398 ~f~ailENV~lD~~~~~v----------------df~d~---------s~T~NtRa~yPi~~i~N~~--~~~~~g~P~~I 450 (490)
+-.+|+.||.+++++ .| ||.+. .-+.|+|.+.|+...|++. -....|.|++.
T Consensus 354 ~~n~IFTNVa~t~dG-~v~WeG~~~~~p~~~~~~dw~G~~w~~~~~~p~aHPNsRft~p~~qcp~~~p~we~p~GVpIsa 432 (624)
T 3moe_A 354 QKNTIFTNVAETSDG-GVYWEGIDEPLAPGVTITSWKNKEWRPQDEEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIEG 432 (624)
T ss_dssp TBSCEEESCEEETTS-CEECTTCCCCCCTTCCEECTTSSEECTTSSSCSSCTTCEEEEEGGGCTTBCTTTTCTTCEEEEE
T ss_pred cCCceEeeeEECCCC-CeecCCCCCCCCCCcceeeCCCCCCCCCCCCcCCCCcccccccHhhCCCCCccccCCCCceEEE
Confidence 889999999998763 33 22222 3459999999999999985 33566889987
Q ss_pred EEEE-eecCCCCCCccc-cCHHHHHH
Q 011235 451 ILLA-CDAFGVLPPVSK-LNLAQTMY 474 (490)
Q Consensus 451 IfLt-~DafgvLPPVsk-Lt~eQA~y 474 (490)
|++. +| ...+|+|.. ++-+...+
T Consensus 433 iiFGGRr-~~~vPlV~ea~~W~hGV~ 457 (624)
T 3moe_A 433 IIFGGRR-PAGVPLVYEALSWQHGVF 457 (624)
T ss_dssp EEEECCC-SSSCCSEEECSSHHHHHH
T ss_pred EEEcccC-CCCCCcEEEecCcchhhh
Confidence 7777 55 456788874 46666655
No 8
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=98.03 E-value=1.5e-06 Score=81.97 Aligned_cols=46 Identities=26% Similarity=0.235 Sum_probs=40.6
Q ss_pred eeeeccccccCCCCCEEEEEeCCCCCcccccc---cCCCceeecCceeec
Q 011235 321 ILSLHSGCNMGKDGDVALFFGLSGTGKTTLST---DHNRYLIGDDEHCWG 367 (490)
Q Consensus 321 ~L~~H~sani~~~g~~~lffGlSGtGKTTLs~---~~~~~lI~DD~~~ws 367 (490)
.+.+||++ +..+|..++|.|.||+|||||+. ..+..||+||...+.
T Consensus 4 ~~~lHas~-v~v~G~gvli~G~SGaGKStlal~L~~rG~~lvaDD~v~i~ 52 (181)
T 3tqf_A 4 KQTWHANF-LVIDKMGVLITGEANIGKSELSLALIDRGHQLVCDDVIDLK 52 (181)
T ss_dssp CEEEESEE-EEETTEEEEEEESSSSSHHHHHHHHHHTTCEEEESSEEEEE
T ss_pred cEEEEEEE-EEECCEEEEEEcCCCCCHHHHHHHHHHcCCeEecCCEEEEE
Confidence 47899999 88999999999999999999887 467889999987655
No 9
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=97.87 E-value=5.1e-06 Score=84.01 Aligned_cols=47 Identities=26% Similarity=0.328 Sum_probs=41.4
Q ss_pred CeeeeccccccCCCCCEEEEEeCCCCCcccccc---cCCCceeecCceeec
Q 011235 320 QILSLHSGCNMGKDGDVALFFGLSGTGKTTLST---DHNRYLIGDDEHCWG 367 (490)
Q Consensus 320 G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~---~~~~~lI~DD~~~ws 367 (490)
..+.+||++ +..+|..++|.|.||+|||||+. ..+..||+||.+.+.
T Consensus 134 ~~~~~H~~~-v~~~g~gvli~G~sG~GKStlal~l~~~G~~lv~DD~v~i~ 183 (312)
T 1knx_A 134 TVAQIHGVL-LEVFGVGVLLTGRSGIGKSECALDLINKNHLFVGDDAIEIY 183 (312)
T ss_dssp CCEEEEEEE-EEETTEEEEEEESSSSSHHHHHHHHHTTTCEEEEEEEEEEE
T ss_pred hcceeEEEE-EEECCEEEEEEcCCCCCHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 459999998 88899999999999999999877 567889999987765
No 10
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.82 E-value=8.5e-06 Score=82.42 Aligned_cols=49 Identities=27% Similarity=0.247 Sum_probs=41.9
Q ss_pred cCCeeeeccccccCCCCCEEEEEeCCCCCcccccc---cCCCceeecCceeec
Q 011235 318 KRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST---DHNRYLIGDDEHCWG 367 (490)
Q Consensus 318 ~~G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~---~~~~~lI~DD~~~ws 367 (490)
-...+++||++ +..+|..++|.|.||+|||||+. ..+..||+||...+.
T Consensus 129 ~~~~~~~H~~~-v~~~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~ 180 (314)
T 1ko7_A 129 LARTTSLHGVL-VDVYGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIR 180 (314)
T ss_dssp TCEEEEEESEE-EEETTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEE
T ss_pred hccceeeeEEE-EEECCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEE
Confidence 34579999998 77799999999999999999877 457889999987655
No 11
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.55 E-value=2.4e-05 Score=74.97 Aligned_cols=49 Identities=27% Similarity=0.194 Sum_probs=40.1
Q ss_pred cCCeeeeccccccCCCCCEEEEEeCCCCCcccccc---cCCCceeecCceeec
Q 011235 318 KRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST---DHNRYLIGDDEHCWG 367 (490)
Q Consensus 318 ~~G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~---~~~~~lI~DD~~~ws 367 (490)
..+.+.+||++ +..+|..++|.|+||+|||||+. .....+|+||...+-
T Consensus 19 ~a~~~~lHa~~-v~~~g~~ilI~GpsGsGKStLA~~La~~g~~iIsdDs~~v~ 70 (205)
T 2qmh_A 19 LAERRSMHGVL-VDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVY 70 (205)
T ss_dssp --CCCCEESEE-EEETTEEEEEECCCTTTTHHHHHHHHTTTCEEEESSEEEEE
T ss_pred cCcceeeeEEE-EEECCEEEEEECCCCCCHHHHHHHHHHhCCeEEecchhhee
Confidence 56788999998 88889999999999999999887 334589999986655
No 12
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.74 E-value=0.008 Score=53.83 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||||||||..
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 357889999999999999877
No 13
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.73 E-value=0.0098 Score=53.37 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=17.9
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|.|+||||||||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 47789999999999999766
No 14
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.71 E-value=0.0092 Score=53.63 Aligned_cols=20 Identities=15% Similarity=0.419 Sum_probs=17.8
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|.|+||+|||||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999999876
No 15
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.64 E-value=0.0098 Score=52.92 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=18.4
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|||||||..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 457789999999999999876
No 16
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.43 E-value=0.012 Score=51.78 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..+++.|+|||||||++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4579999999999999876
No 17
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.43 E-value=0.011 Score=53.70 Aligned_cols=21 Identities=48% Similarity=0.707 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|+||||||||+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 457889999999999999866
No 18
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.38 E-value=0.014 Score=53.55 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|+||||||||..
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 457899999999999999766
No 19
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.29 E-value=0.012 Score=54.90 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=18.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|+||+|||||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIK 41 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 20
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.16 E-value=0.016 Score=51.93 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=17.8
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|.|+||||||||+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999999876
No 21
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.09 E-value=0.016 Score=53.29 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|+||+|||||..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHH
Confidence 467899999999999999776
No 22
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.06 E-value=0.014 Score=52.66 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=16.2
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|+.++|.|+||+|||||..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~ 19 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCCEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568999999999999755
No 23
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.06 E-value=0.013 Score=53.39 Aligned_cols=20 Identities=35% Similarity=0.321 Sum_probs=17.7
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|.|+||+|||||+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 46789999999999999876
No 24
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.99 E-value=0.013 Score=51.19 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=16.7
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..+++.|++|||||||+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999999876
No 25
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.93 E-value=0.017 Score=53.05 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.4
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+||+|||||+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSN 40 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 457789999999999999876
No 26
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.90 E-value=0.014 Score=53.47 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=16.4
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|.|+||+|||||..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36789999999999999766
No 27
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.87 E-value=0.019 Score=54.21 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 28
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.66 E-value=0.017 Score=51.30 Aligned_cols=19 Identities=42% Similarity=0.650 Sum_probs=17.4
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..++|+|++|||||||+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp CCEEEECCSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 6789999999999999875
No 29
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.61 E-value=0.022 Score=51.79 Aligned_cols=20 Identities=35% Similarity=0.610 Sum_probs=18.0
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..+++.|++|||||||+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 47789999999999999876
No 30
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.54 E-value=0.021 Score=50.27 Aligned_cols=20 Identities=30% Similarity=0.750 Sum_probs=17.6
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..+++.|++|||||||+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 36789999999999999876
No 31
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.53 E-value=0.021 Score=52.96 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=14.4
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|+||||||||..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp ECCCEEEEECSCC----CHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 457899999999999999765
No 32
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.38 E-value=0.024 Score=51.46 Aligned_cols=20 Identities=35% Similarity=0.283 Sum_probs=17.8
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..+.+.|+||||||||+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHH
Confidence 46789999999999999876
No 33
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.30 E-value=0.019 Score=51.31 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=16.3
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..++|.|++|||||||..
T Consensus 2 g~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3468999999999999766
No 34
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.26 E-value=0.029 Score=53.36 Aligned_cols=21 Identities=38% Similarity=0.722 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||||||||..
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~ 49 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLN 49 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 568999999999999999765
No 35
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.19 E-value=0.026 Score=48.86 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++||||||++.
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999999877
No 36
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.18 E-value=0.025 Score=51.88 Aligned_cols=21 Identities=43% Similarity=0.697 Sum_probs=18.3
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|||||||..
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHH
Confidence 457899999999999999765
No 37
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.11 E-value=0.026 Score=48.28 Aligned_cols=17 Identities=35% Similarity=0.739 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++||||||++.
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999999876
No 38
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.08 E-value=0.03 Score=52.87 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+||||||||..
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~ 48 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLY 48 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 39
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.07 E-value=0.03 Score=50.47 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=18.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|++|||||||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr 51 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTR 51 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 457889999999999999766
No 40
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.06 E-value=0.03 Score=50.83 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=18.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..+..++|.|+|||||||++.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 347789999999999999876
No 41
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.95 E-value=0.028 Score=50.95 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.1
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|+||||||||..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 357789999999999999765
No 42
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.85 E-value=0.033 Score=49.03 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|.|++||||||++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4579999999999999876
No 43
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.71 E-value=0.039 Score=53.45 Aligned_cols=21 Identities=43% Similarity=0.707 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||||||||..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk 50 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLR 50 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 44
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.64 E-value=0.037 Score=48.93 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=16.7
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|.|++||||||++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4579999999999999876
No 45
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.64 E-value=0.033 Score=48.49 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++|+||||++.
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 58999999999999876
No 46
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.61 E-value=0.041 Score=51.78 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=18.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.++|.|+||+|||||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHH
Confidence 357899999999999999866
No 47
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.60 E-value=0.037 Score=48.97 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=17.0
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|.|++||||||++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4579999999999999877
No 48
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.59 E-value=0.042 Score=48.59 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=17.9
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|+|++|+|||||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999999876
No 49
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.44 E-value=0.045 Score=52.16 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||||||||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~ 49 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLS 49 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 50
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.39 E-value=0.038 Score=49.01 Aligned_cols=20 Identities=50% Similarity=0.675 Sum_probs=17.6
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|.|++||||||++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46789999999999999766
No 51
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.39 E-value=0.036 Score=48.72 Aligned_cols=17 Identities=29% Similarity=0.683 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++||||||++.
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999876
No 52
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.27 E-value=0.049 Score=51.09 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|||||||..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 357889999999999999765
No 53
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.19 E-value=0.037 Score=50.01 Aligned_cols=19 Identities=26% Similarity=0.594 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|.|++||||||++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SSCEEEECSTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3579999999999999876
No 54
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.18 E-value=0.037 Score=49.00 Aligned_cols=20 Identities=40% Similarity=0.390 Sum_probs=17.3
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|+||+||||++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 35679999999999999877
No 55
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.16 E-value=0.045 Score=52.70 Aligned_cols=21 Identities=48% Similarity=0.831 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||||||||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk 51 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLIN 51 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred eCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 56
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.10 E-value=0.051 Score=52.91 Aligned_cols=21 Identities=38% Similarity=0.781 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||||||||..
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk 68 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLR 68 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCCcHHHHHH
Confidence 568899999999999999766
No 57
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.07 E-value=0.046 Score=49.87 Aligned_cols=19 Identities=42% Similarity=0.469 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|.|+|||||||++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3579999999999999877
No 58
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.04 E-value=0.054 Score=55.53 Aligned_cols=21 Identities=43% Similarity=0.718 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.++|+||||||||..
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr 48 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLR 48 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHHH
Confidence 568999999999999999765
No 59
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.04 E-value=0.047 Score=52.41 Aligned_cols=21 Identities=48% Similarity=0.743 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||||||||..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~ 53 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTK 53 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 60
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.03 E-value=0.047 Score=51.65 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||||||||..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~ 52 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLM 52 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 61
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.02 E-value=0.048 Score=51.99 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~ 50 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLS 50 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 62
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.99 E-value=0.047 Score=53.11 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+||||||||..
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~ 55 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLR 55 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 568899999999999999765
No 63
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.95 E-value=0.049 Score=52.22 Aligned_cols=21 Identities=38% Similarity=0.713 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk 47 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGK 47 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 64
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.95 E-value=0.1 Score=48.29 Aligned_cols=44 Identities=34% Similarity=0.486 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHhcccCCeeeeccccccC-CCCCEEEEEeCCCCCcccccc
Q 011235 303 EMKKGLFSVMHYLMPKRQILSLHSGCNMG-KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 303 EmKK~iltl~~~~l~~~G~L~~H~sani~-~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|+.+..+..++...+-+.. .+ .....++|+|++|||||+|+.
T Consensus 13 ~~~~~l~~~~~~~~~~~~~~~------~g~~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 13 EAKLEVREFVDYLKSPERFLQ------LGAKVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp HHHHHHHHHHHHHHCCC------------CCCCCEEEEESCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHH------cCCCCCceEEEECCCCCCHHHHHH
Confidence 467777666655333222111 12 234579999999999999876
No 65
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.94 E-value=0.049 Score=53.46 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||||||||..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~ 52 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQ 52 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999766
No 66
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.93 E-value=0.049 Score=51.91 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~ 46 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFS 46 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 67
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.86 E-value=0.057 Score=52.60 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk 63 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAA 63 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 68
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.82 E-value=0.058 Score=52.27 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||||||||..
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk 59 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLR 59 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 69
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.78 E-value=0.059 Score=52.19 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~ 51 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQ 51 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 568899999999999999765
No 70
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.77 E-value=0.059 Score=52.09 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~ 64 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAK 64 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 71
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.72 E-value=0.06 Score=52.25 Aligned_cols=21 Identities=43% Similarity=0.748 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||||||||..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk 64 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSA 64 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 72
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.68 E-value=0.061 Score=48.39 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=17.9
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|.|.+||||||++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 46789999999999999877
No 73
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.61 E-value=0.054 Score=52.98 Aligned_cols=20 Identities=35% Similarity=0.502 Sum_probs=17.5
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|+||||||||+.
T Consensus 32 ~~~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35679999999999999877
No 74
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.56 E-value=0.066 Score=48.33 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=17.3
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|++||||||++.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34579999999999999876
No 75
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.56 E-value=0.059 Score=50.49 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=17.0
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|+|++|||||||+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5689999999999999876
No 76
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.53 E-value=0.048 Score=51.55 Aligned_cols=21 Identities=48% Similarity=0.729 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk 53 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLK 53 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 77
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.50 E-value=0.057 Score=53.67 Aligned_cols=20 Identities=45% Similarity=0.712 Sum_probs=17.9
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|.|+||+|||||..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 47899999999999999776
No 78
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.41 E-value=0.066 Score=54.72 Aligned_cols=21 Identities=48% Similarity=0.681 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.++|+||||||||..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr 47 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLL 47 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHH
Confidence 568899999999999999765
No 79
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.40 E-value=0.06 Score=52.79 Aligned_cols=21 Identities=48% Similarity=0.824 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||||||||..
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk 65 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLN 65 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 468899999999999999765
No 80
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.39 E-value=0.061 Score=48.43 Aligned_cols=20 Identities=40% Similarity=0.481 Sum_probs=17.8
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..+++.|++|+|||||..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 47789999999999999766
No 81
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.39 E-value=0.066 Score=55.32 Aligned_cols=21 Identities=43% Similarity=0.790 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.++|+||||||||..
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr 47 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLR 47 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEEcCCCchHHHHHH
Confidence 568999999999999999765
No 82
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.39 E-value=0.045 Score=48.35 Aligned_cols=19 Identities=37% Similarity=0.765 Sum_probs=16.6
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..++|.|++||||||++.
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4469999999999999876
No 83
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.31 E-value=0.069 Score=48.42 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=18.3
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..+..+++.|.||+|||||+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 346789999999999999877
No 84
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.31 E-value=0.063 Score=51.75 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~ 49 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLD 49 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 85
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.30 E-value=0.058 Score=53.70 Aligned_cols=21 Identities=19% Similarity=0.058 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+||+|||||+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~ 108 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTAR 108 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHH
Confidence 567889999999999999876
No 86
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.28 E-value=0.069 Score=45.83 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=16.6
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|.|++|||||||+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4578999999999999876
No 87
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.28 E-value=0.06 Score=50.64 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=18.4
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|++|||||||+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 457789999999999999877
No 88
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.28 E-value=0.097 Score=49.05 Aligned_cols=18 Identities=44% Similarity=0.612 Sum_probs=16.1
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|++|||||||+.
T Consensus 46 ~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 459999999999999876
No 89
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.27 E-value=0.074 Score=47.80 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=17.7
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|.+||||||++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45689999999999999876
No 90
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.25 E-value=0.07 Score=54.61 Aligned_cols=21 Identities=48% Similarity=0.759 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.++|+||||||||..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr 47 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLY 47 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCchHHHHHH
Confidence 568899999999999999765
No 91
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.24 E-value=0.057 Score=48.24 Aligned_cols=19 Identities=37% Similarity=0.691 Sum_probs=16.7
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|.|++||||||++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4579999999999999876
No 92
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.20 E-value=0.071 Score=54.75 Aligned_cols=21 Identities=48% Similarity=0.726 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.++|+||||||||..
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr 55 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLR 55 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 568899999999999999765
No 93
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.15 E-value=0.07 Score=48.12 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=17.1
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|.|++|||||||+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5689999999999999876
No 94
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.13 E-value=0.065 Score=51.90 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|+||+|||||..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHH
Confidence 457789999999999999765
No 95
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.10 E-value=0.07 Score=51.46 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk 44 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLA 44 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 468899999999999999766
No 96
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.09 E-value=0.067 Score=47.68 Aligned_cols=20 Identities=50% Similarity=0.770 Sum_probs=17.5
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|.|++|+||||++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46679999999999999776
No 97
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.02 E-value=0.077 Score=47.76 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHH
Confidence 357899999999999999876
No 98
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.02 E-value=0.068 Score=54.60 Aligned_cols=21 Identities=38% Similarity=0.729 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.++|+||||||||..
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr 59 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILR 59 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHH
Confidence 468899999999999999765
No 99
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.00 E-value=0.068 Score=46.95 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=12.7
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|.|++||||||++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4579999999999999876
No 100
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.99 E-value=0.059 Score=47.84 Aligned_cols=17 Identities=41% Similarity=0.690 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|.+||||||++.
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47899999999999876
No 101
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.95 E-value=0.059 Score=50.09 Aligned_cols=18 Identities=44% Similarity=0.529 Sum_probs=15.6
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
+.++|.|+||+|||||..
T Consensus 2 RpIVi~GPSG~GK~Tl~~ 19 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 458999999999999865
No 102
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.94 E-value=0.07 Score=54.71 Aligned_cols=21 Identities=48% Similarity=0.749 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.++|+||||||||..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr 47 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLR 47 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHH
Confidence 568899999999999999765
No 103
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.87 E-value=0.072 Score=48.57 Aligned_cols=20 Identities=45% Similarity=0.386 Sum_probs=17.5
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..+.+.|.||+|||||+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45689999999999999876
No 104
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.84 E-value=0.074 Score=48.63 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|++|+|||||+.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHH
Confidence 357899999999999999765
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.81 E-value=0.068 Score=48.73 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=14.9
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++|||||||..
T Consensus 2 ~i~l~G~nGsGKTTLl~ 18 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVK 18 (178)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999865
No 106
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.81 E-value=0.076 Score=47.46 Aligned_cols=19 Identities=42% Similarity=0.639 Sum_probs=17.1
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..++|.|.+||||||++.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 5679999999999999876
No 107
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.80 E-value=0.065 Score=49.54 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=16.6
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..++|.|++|+|||||..
T Consensus 1 G~~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CCCEEEESCCSSCHHHHHH
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 5678999999999999766
No 108
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.78 E-value=0.068 Score=51.06 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCccccccc----CCCceee-cCce
Q 011235 336 VALFFGLSGTGKTTLSTD----HNRYLIG-DDEH 364 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~~----~~~~lI~-DD~~ 364 (490)
.++++|++|||||||+.. .+..+|. |+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 578999999999998772 2444554 5543
No 109
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.78 E-value=0.068 Score=46.12 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=16.5
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|.|++|||||||+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4568999999999999876
No 110
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.72 E-value=0.088 Score=46.61 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=17.4
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|++||||||++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45689999999999999876
No 111
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.71 E-value=0.09 Score=51.93 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk 82 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLM 82 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 578899999999999999765
No 112
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.69 E-value=0.089 Score=52.66 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..++|.|+||||||||..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~ 144 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCN 144 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 568899999999999999876
No 113
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.65 E-value=0.064 Score=54.58 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.++|+||||||||..
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr 44 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLE 44 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHHH
Confidence 578899999999999999765
No 114
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.59 E-value=0.086 Score=51.29 Aligned_cols=19 Identities=42% Similarity=0.760 Sum_probs=17.7
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..+++.|+||+|||||..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk 48 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLR 48 (263)
T ss_dssp SSEEEEECCTTSSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 8999999999999999766
No 115
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.54 E-value=0.086 Score=50.15 Aligned_cols=21 Identities=38% Similarity=0.344 Sum_probs=18.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+||||||||+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 457799999999999999876
No 116
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.40 E-value=0.092 Score=47.10 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=17.6
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..+++.|.+||||||++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45689999999999999876
No 117
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.40 E-value=0.073 Score=48.36 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++||||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999876
No 118
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.34 E-value=0.073 Score=49.81 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=15.0
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|+|++|||||||+.
T Consensus 52 ~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLAR 67 (254)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 9999999999999876
No 119
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.33 E-value=0.084 Score=49.26 Aligned_cols=21 Identities=33% Similarity=0.306 Sum_probs=18.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.|.|.+|+|||||..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~ 38 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLN 38 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHH
Confidence 457789999999999999766
No 120
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.30 E-value=0.075 Score=46.89 Aligned_cols=17 Identities=41% Similarity=0.800 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++||||||++.
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 48899999999999876
No 121
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.29 E-value=0.076 Score=52.62 Aligned_cols=47 Identities=26% Similarity=0.407 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHhcccCCeeeeccccccC-CCCCEEEEEeCCCCCcccccc
Q 011235 303 EMKKGLFSVMHYLMPKRQILSLHSGCNMG-KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 303 EmKK~iltl~~~~l~~~G~L~~H~sani~-~~g~~~lffGlSGtGKTTLs~ 352 (490)
++++.+...+.-++.....+ -..+.. ..|.+++|.|++|+|||||..
T Consensus 71 ~~~~~~~~~l~~~l~~~~~~---~~l~~~~~~g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 71 EIKDALKESVLEMLAKKNSK---TELQLGFRKPAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp HHHHHHHHHHHHHHCC--CC---CSCCCCSSSCEEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccc---cccccccCCCcEEEEEcCCCCCHHHHHH
Confidence 46666666665544322100 011222 457899999999999999776
No 122
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.27 E-value=0.06 Score=54.75 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.++|+||||||||..
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr 49 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMR 49 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHH
Confidence 568899999999999999765
No 123
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.26 E-value=0.072 Score=50.53 Aligned_cols=20 Identities=40% Similarity=0.454 Sum_probs=17.4
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|++||||||++.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34579999999999999877
No 124
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.26 E-value=0.045 Score=49.36 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|+|||||||++.
T Consensus 2 ~I~i~G~~GsGKsTl~~ 18 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVE 18 (214)
T ss_dssp EEEEEEEEEEEHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 57899999999999876
No 125
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.25 E-value=0.098 Score=53.81 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+||||||||..
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr 72 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIR 72 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHH
Confidence 578999999999999999765
No 126
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.21 E-value=0.081 Score=46.48 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=16.5
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|.|.+||||||++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3468999999999999876
No 127
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.19 E-value=0.078 Score=46.99 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++||||||++.
T Consensus 2 ~I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999999877
No 128
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.13 E-value=0.11 Score=49.62 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=17.7
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|+|++|||||||+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 45789999999999999876
No 129
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.12 E-value=0.095 Score=47.09 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=16.4
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|++|||||||+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 689999999999999876
No 130
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.08 E-value=0.08 Score=48.19 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++||||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999999876
No 131
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.07 E-value=0.091 Score=48.06 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=18.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|++|+||||++.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 346689999999999999876
No 132
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.04 E-value=0.1 Score=46.36 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=16.9
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|.|++||||||++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4579999999999999876
No 133
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.98 E-value=0.098 Score=50.88 Aligned_cols=20 Identities=40% Similarity=0.669 Sum_probs=17.7
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|+|++|||||||+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHH
Confidence 46789999999999999876
No 134
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.85 E-value=0.099 Score=51.36 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=18.1
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+||||||||+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~ 98 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTAR 98 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 346789999999999999876
No 135
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.85 E-value=0.085 Score=45.87 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++||||||++.
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CEEEESCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999999876
No 136
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.84 E-value=0.086 Score=46.39 Aligned_cols=17 Identities=41% Similarity=0.692 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|.+||||||++.
T Consensus 2 ~I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999876
No 137
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.83 E-value=0.093 Score=47.39 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.+++.|++||||||++.
T Consensus 4 ~i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999776
No 138
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.80 E-value=0.083 Score=52.75 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||+|||||..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ 98 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILR 98 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHHH
Confidence 568999999999999999766
No 139
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.79 E-value=0.13 Score=49.14 Aligned_cols=21 Identities=38% Similarity=0.379 Sum_probs=17.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..+..++|+|++|||||+|+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 345679999999999999875
No 140
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.77 E-value=0.11 Score=46.32 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~ 44 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALN 44 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 456789999999999999876
No 141
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.73 E-value=0.12 Score=53.40 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+||||||||..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr 65 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLS 65 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEECCCCChHHHHHH
Confidence 578999999999999999765
No 142
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.73 E-value=0.11 Score=49.66 Aligned_cols=18 Identities=28% Similarity=0.630 Sum_probs=16.5
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..+++.|+||||||||..
T Consensus 25 e~~~liG~nGsGKSTLl~ 42 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLE 42 (240)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 789999999999999765
No 143
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.68 E-value=0.11 Score=49.21 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=17.3
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|+|++|||||||+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 35679999999999999876
No 144
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.67 E-value=0.14 Score=44.01 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=19.5
Q ss_pred ccCCCCCEEEEEeCCCCCcccccc
Q 011235 329 NMGKDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 329 ni~~~g~~~lffGlSGtGKTTLs~ 352 (490)
++......++|+|++|+|||||..
T Consensus 3 ~~~~~~~~i~v~G~~~~GKssl~~ 26 (178)
T 2lkc_A 3 HMVERPPVVTIMGHVDHGKTTLLD 26 (178)
T ss_dssp TTCCCCCEEEEESCTTTTHHHHHH
T ss_pred CcCCCCCEEEEECCCCCCHHHHHH
Confidence 344556689999999999999766
No 145
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.41 E-value=0.12 Score=49.46 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||+.
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHH
Confidence 468899999999999999866
No 146
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.36 E-value=0.11 Score=45.16 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|.+||||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999999876
No 147
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.31 E-value=0.099 Score=52.57 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=18.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|.+++|.|++|+|||||..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~ 147 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIA 147 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 457899999999999999766
No 148
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.28 E-value=0.1 Score=46.19 Aligned_cols=17 Identities=41% Similarity=0.794 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++||||||++.
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp SEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48899999999999876
No 149
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.17 E-value=0.11 Score=44.92 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=17.2
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|+|++|||||+++.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 34569999999999999876
No 150
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.16 E-value=0.12 Score=46.53 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.+++.|.+||||||++.
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 58899999999999876
No 151
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.11 E-value=0.11 Score=47.69 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=16.0
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|++||||||++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999999776
No 152
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.09 E-value=0.1 Score=50.59 Aligned_cols=16 Identities=44% Similarity=0.642 Sum_probs=15.0
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|+|++|||||||+.
T Consensus 47 vlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAK 62 (274)
T ss_dssp EEEESSTTSCHHHHHH
T ss_pred EEEECCCCCcHHHHHH
Confidence 9999999999999876
No 153
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.09 E-value=0.13 Score=47.10 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=17.2
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|++||||||++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35579999999999999876
No 154
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.92 E-value=0.11 Score=49.61 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=15.0
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|+|++|||||||+.
T Consensus 76 vll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLAR 91 (278)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCcChHHHHHH
Confidence 9999999999999876
No 155
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.92 E-value=0.14 Score=46.86 Aligned_cols=21 Identities=43% Similarity=0.597 Sum_probs=18.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~ 41 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQ 41 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 357889999999999999855
No 156
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.88 E-value=0.12 Score=45.33 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=16.1
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|++||||||++.
T Consensus 7 ~~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468999999999999876
No 157
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.84 E-value=0.14 Score=45.65 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=16.6
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...+++.|.+||||||++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAA 26 (203)
T ss_dssp CEEEEEEECTTSCHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3569999999999999876
No 158
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.75 E-value=0.11 Score=50.27 Aligned_cols=19 Identities=37% Similarity=0.700 Sum_probs=17.3
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..++|.|+|||||||++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TCCEEEECSTTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 6789999999999999866
No 159
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.73 E-value=0.11 Score=51.31 Aligned_cols=18 Identities=50% Similarity=0.669 Sum_probs=16.1
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|++|||||||+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 468999999999999876
No 160
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=88.63 E-value=0.14 Score=50.07 Aligned_cols=19 Identities=42% Similarity=0.700 Sum_probs=17.1
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|+|++|||||+|+.
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4689999999999999876
No 161
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.59 E-value=0.14 Score=49.70 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.+++.|+||+|||||..
T Consensus 4 ~v~lvG~nGaGKSTLln 20 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVN 20 (270)
T ss_dssp EEEEEESSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999766
No 162
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.53 E-value=0.16 Score=48.79 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHH
Confidence 568899999999999999766
No 163
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.51 E-value=0.15 Score=47.02 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|.|++||||||++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4579999999999999876
No 164
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.50 E-value=0.12 Score=46.37 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=16.5
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|.|++||||||++.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~ 33 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCE 33 (203)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3469999999999999875
No 165
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.49 E-value=0.12 Score=44.65 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=16.6
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|+|++|||||+++.
T Consensus 27 ~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp SSCEEEEEETTCCHHHHHG
T ss_pred CCcEEEECCCCccHHHHHH
Confidence 3469999999999999876
No 166
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.34 E-value=0.13 Score=52.64 Aligned_cols=46 Identities=26% Similarity=0.416 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHhcccCC-eeeeccccccC-CCCCEEEEEeCCCCCcccccc
Q 011235 303 EMKKGLFSVMHYLMPKRQ-ILSLHSGCNMG-KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 303 EmKK~iltl~~~~l~~~G-~L~~H~sani~-~~g~~~lffGlSGtGKTTLs~ 352 (490)
++++.+...+.-++.... .-+ .++. ..|.+++|.|++|+|||||..
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~----l~l~~~~g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTE----LQLGFRKPAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CS----CCCCSSSSEEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCC----cceecCCCeEEEEEcCCCChHHHHHH
Confidence 466666655544443211 001 1222 457899999999999999776
No 167
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.15 E-value=0.16 Score=44.92 Aligned_cols=18 Identities=39% Similarity=0.661 Sum_probs=16.1
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|++|+|||||+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478999999999999876
No 168
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.08 E-value=0.16 Score=44.57 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=16.9
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|++|+|||||..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~ 22 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLN 22 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45679999999999999766
No 169
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.93 E-value=0.097 Score=47.74 Aligned_cols=18 Identities=44% Similarity=0.473 Sum_probs=15.8
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..+.|.|.||+|||||..
T Consensus 3 ~~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp CEEEEEESCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368899999999999776
No 170
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=87.90 E-value=0.18 Score=52.60 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=17.5
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..+.++|+||||||||..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~ 175 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLG 175 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999999765
No 171
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.84 E-value=0.18 Score=51.04 Aligned_cols=20 Identities=40% Similarity=0.401 Sum_probs=17.5
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..+.++|++|||||||..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~ 89 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLG 89 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999999755
No 172
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.81 E-value=0.22 Score=43.95 Aligned_cols=17 Identities=24% Similarity=0.589 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
..+|+|++|||||||..
T Consensus 28 ~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 89999999999999644
No 173
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.76 E-value=0.15 Score=44.83 Aligned_cols=17 Identities=47% Similarity=0.606 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++|+|||||+.
T Consensus 40 ~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAI 56 (226)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 39999999999999876
No 174
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=87.74 E-value=0.16 Score=48.13 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=16.1
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|++|||||+|+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999999876
No 175
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.69 E-value=0.16 Score=51.36 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=18.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..++|.|+||+|||||..
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMK 193 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHH
T ss_pred hcCCEEEEECCCCCCHHHHHH
Confidence 457789999999999999766
No 176
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.60 E-value=0.16 Score=48.59 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++||||||++.
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999876
No 177
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=87.57 E-value=0.15 Score=48.62 Aligned_cols=18 Identities=39% Similarity=0.672 Sum_probs=16.2
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|++||||||++.
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 468999999999999876
No 178
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.46 E-value=0.13 Score=51.36 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=17.3
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|.|+||||||||..
T Consensus 170 g~k~~IvG~nGsGKSTLlk 188 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVN 188 (365)
T ss_dssp CEEEEEECCTTSHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHH
Confidence 6789999999999999876
No 179
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=87.46 E-value=0.18 Score=49.38 Aligned_cols=19 Identities=37% Similarity=0.611 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|+|++|||||+|+.
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4579999999999999876
No 180
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.43 E-value=0.17 Score=47.64 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=17.6
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|.|++||||||++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~ 44 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVIN 44 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 46779999999999999776
No 181
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.37 E-value=0.18 Score=46.02 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.4
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|.|.+||||||++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3468999999999999766
No 182
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.37 E-value=0.17 Score=47.84 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|+|++|+||||++.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4479999999999999877
No 183
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=87.29 E-value=0.2 Score=49.14 Aligned_cols=20 Identities=40% Similarity=0.740 Sum_probs=17.9
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|.|+||+|||||..
T Consensus 168 ~geiv~l~G~sG~GKSTll~ 187 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLN 187 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHH
T ss_pred cCCeEEEECCCCCcHHHHHH
Confidence 47899999999999999766
No 184
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.24 E-value=0.18 Score=49.71 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=17.3
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..+.+.|.||+|||||+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35579999999999999876
No 185
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.23 E-value=0.2 Score=44.75 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++|+|||||..
T Consensus 31 kv~lvG~~g~GKSTLl~ 47 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLS 47 (191)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 58999999999999865
No 186
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=87.17 E-value=0.15 Score=49.52 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|+|++|||||||+.
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4579999999999999876
No 187
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.17 E-value=0.17 Score=46.19 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++||||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999999776
No 188
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.17 E-value=0.19 Score=43.90 Aligned_cols=18 Identities=28% Similarity=0.661 Sum_probs=16.0
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..+++.|.+||||||++.
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368999999999999876
No 189
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.09 E-value=0.2 Score=49.33 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|.+++|.|++|+||||++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 457899999999999999766
No 190
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.06 E-value=0.21 Score=49.17 Aligned_cols=20 Identities=30% Similarity=0.650 Sum_probs=18.0
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|.|+||+|||||..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln 183 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILS 183 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHH
Confidence 47899999999999999766
No 191
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.91 E-value=0.21 Score=48.91 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=13.9
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...+.+.|.|||||||++.
T Consensus 5 ~~iIgItG~sGSGKSTva~ 23 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKH 23 (290)
T ss_dssp SCEEEEESCC---CCTHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4579999999999999887
No 192
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.90 E-value=0.2 Score=49.47 Aligned_cols=19 Identities=42% Similarity=0.579 Sum_probs=17.0
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|+|++|||||+|+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4689999999999999876
No 193
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.86 E-value=0.17 Score=47.79 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.3
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|+|++|||||+|+.
T Consensus 49 ~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34579999999999999876
No 194
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=86.74 E-value=0.19 Score=47.85 Aligned_cols=18 Identities=44% Similarity=0.733 Sum_probs=16.1
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|++|||||||+.
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 369999999999999876
No 195
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.73 E-value=0.21 Score=44.59 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 7 kv~lvG~~g~GKSTLl~ 23 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLS 23 (199)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 58999999999999865
No 196
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=86.65 E-value=0.18 Score=46.75 Aligned_cols=17 Identities=41% Similarity=0.643 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++||||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999876
No 197
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=86.59 E-value=0.25 Score=52.99 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|+||+|||||..
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~ 388 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLS 388 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 678999999999999999766
No 198
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=86.59 E-value=0.24 Score=52.93 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|+||+|||||..
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~ 387 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIAS 387 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 199
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.55 E-value=0.2 Score=44.17 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++|+|||||..
T Consensus 4 kv~ivG~~gvGKStLl~ 20 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQ 20 (184)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999866
No 200
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=86.51 E-value=0.2 Score=50.13 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=17.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~ 189 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIK 189 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 346689999999999999766
No 201
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=86.49 E-value=0.15 Score=54.96 Aligned_cols=21 Identities=48% Similarity=0.814 Sum_probs=18.4
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|+|+||||||||+.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar 387 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLAR 387 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHH
Confidence 357789999999999999776
No 202
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.48 E-value=0.27 Score=44.21 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.6
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|+|++|+|||||..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~ 30 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLT 30 (218)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999999776
No 203
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=86.40 E-value=0.22 Score=50.56 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|++|+|||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 456789999999999999765
No 204
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.39 E-value=0.25 Score=41.29 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++++|.+|+|||||..
T Consensus 5 ~i~v~G~~~~GKssl~~ 21 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTI 21 (166)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999766
No 205
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.33 E-value=0.21 Score=48.25 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=17.4
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|++|+|||||+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45679999999999999876
No 206
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.21 E-value=0.23 Score=48.32 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=16.6
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|+|++|||||+|+.
T Consensus 36 p~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp CSEEEEEECTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3578999999999999877
No 207
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=86.13 E-value=0.096 Score=49.16 Aligned_cols=18 Identities=44% Similarity=0.619 Sum_probs=15.8
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|++|||||+|+.
T Consensus 45 ~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp SCCCCBCSSCSSHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 348999999999999876
No 208
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=86.13 E-value=0.26 Score=52.77 Aligned_cols=21 Identities=43% Similarity=0.803 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|+||+|||||..
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~ 385 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLIN 385 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 568999999999999999766
No 209
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.13 E-value=0.23 Score=53.27 Aligned_cols=21 Identities=43% Similarity=0.502 Sum_probs=18.4
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|.+++|.|++|+|||||..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIG 311 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHH
Confidence 457899999999999999766
No 210
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.10 E-value=0.25 Score=45.38 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=16.4
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|.|++||||||++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3468999999999999776
No 211
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.07 E-value=0.24 Score=42.79 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++|+|||||..
T Consensus 5 ~v~lvG~~gvGKStL~~ 21 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFN 21 (165)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999876
No 212
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.06 E-value=0.21 Score=50.20 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=15.6
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.+.|.|+||||||||+.
T Consensus 94 iigI~GpsGSGKSTl~~ 110 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSR 110 (321)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999999876
No 213
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=86.02 E-value=0.23 Score=49.31 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=17.4
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|++|||||+++.
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45679999999999999876
No 214
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=85.85 E-value=0.26 Score=45.13 Aligned_cols=18 Identities=50% Similarity=0.580 Sum_probs=15.8
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|.||+|||||..
T Consensus 7 ~~i~i~G~sGsGKTTl~~ 24 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLK 24 (174)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHH
Confidence 468999999999999766
No 215
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=85.80 E-value=0.23 Score=46.79 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=16.2
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..+++.|.+||||||++.
T Consensus 23 ~iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 369999999999999877
No 216
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=85.75 E-value=0.26 Score=52.67 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|+||+|||||..
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~ 387 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999766
No 217
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.75 E-value=0.22 Score=49.54 Aligned_cols=43 Identities=26% Similarity=0.310 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHhcccCCeeeecccccc-CCCCCEEEEEeCCCCCcccccc
Q 011235 304 MKKGLFSVMHYLMPKRQILSLHSGCNM-GKDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 304 mKK~iltl~~~~l~~~G~L~~H~sani-~~~g~~~lffGlSGtGKTTLs~ 352 (490)
+++.+...+.-++.... ++ ++ ...+.+++|.|++|+||||++.
T Consensus 79 ~~~~~~~~l~~~l~~~~--~~----~~~~~~~~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 79 ALESLKEIILEILNFDT--KL----NVPPEPPFVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp HHHHHHHHHHHHTCSCC--CC----CCCSSSCEEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC--CC----cccCCCCeEEEEEcCCCChHHHHHH
Confidence 66666666655554322 22 22 2356789999999999999776
No 218
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=85.72 E-value=0.23 Score=49.99 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.3
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.++|++|||||||..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 457789999999999999766
No 219
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.69 E-value=0.25 Score=50.23 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=16.3
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|.|++|||||||..
T Consensus 123 ~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3479999999999999765
No 220
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=85.59 E-value=0.26 Score=51.94 Aligned_cols=21 Identities=48% Similarity=0.540 Sum_probs=18.4
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|||||||..
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~ 57 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSI 57 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHH
Confidence 357899999999999999765
No 221
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=85.59 E-value=0.27 Score=50.34 Aligned_cols=20 Identities=40% Similarity=0.783 Sum_probs=18.1
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|.|+||+|||||..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln 233 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLN 233 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 57899999999999999876
No 222
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=85.57 E-value=0.26 Score=50.89 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.3
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|+|+||+|||||..
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHH
Confidence 347899999999999999765
No 223
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=85.50 E-value=0.26 Score=53.58 Aligned_cols=20 Identities=40% Similarity=0.808 Sum_probs=18.2
Q ss_pred CCCCEEEEEeCCCCCccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLS 351 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs 351 (490)
..|..+.+.|+||||||||.
T Consensus 42 ~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 42 PRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHh
Confidence 46889999999999999994
No 224
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.49 E-value=0.25 Score=48.75 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=17.0
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|+|++|||||+|+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999999875
No 225
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=85.46 E-value=0.25 Score=44.06 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=15.6
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.+.+.|.+||||||++.
T Consensus 4 ~i~i~G~~GsGKst~~~ 20 (208)
T 3ake_A 4 IVTIDGPSASGKSSVAR 20 (208)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999999876
No 226
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.43 E-value=0.26 Score=45.30 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=15.8
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
.++.|.|.||+|||||..
T Consensus 5 ~~i~i~G~sGsGKTTl~~ 22 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLME 22 (169)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 368999999999999776
No 227
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.42 E-value=0.29 Score=52.23 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||||||||..
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk 65 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVK 65 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 578999999999999999765
No 228
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=85.40 E-value=0.31 Score=52.39 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|+||+|||||..
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~ 399 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVN 399 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 568999999999999999765
No 229
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=85.38 E-value=0.28 Score=41.13 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 5 ~i~v~G~~~~GKSsli~ 21 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTV 21 (167)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999865
No 230
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.38 E-value=0.25 Score=47.58 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=16.3
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.++|.|+|||||||++.
T Consensus 10 ~~i~i~G~~GsGKsTla~ 27 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSR 27 (233)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 479999999999999876
No 231
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=85.38 E-value=0.28 Score=50.41 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=17.1
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...+++.|+|||||||++.
T Consensus 258 ~~lIil~G~pGSGKSTla~ 276 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQ 276 (416)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4679999999999999877
No 232
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=85.38 E-value=0.3 Score=45.39 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=17.2
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|.+||||||++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34579999999999999776
No 233
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=85.37 E-value=0.27 Score=53.38 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=18.1
Q ss_pred CCCCEEEEEeCCCCCccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLS 351 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs 351 (490)
..|..++|.|+||||||||.
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl 365 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLV 365 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEEeeCCCCHHHHH
Confidence 46889999999999999986
No 234
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=85.31 E-value=0.29 Score=50.28 Aligned_cols=21 Identities=38% Similarity=0.415 Sum_probs=18.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|++|||||||+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~ 187 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAA 187 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 457799999999999999876
No 235
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=85.27 E-value=0.28 Score=42.67 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=15.6
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 9 ~i~lvG~~gvGKStL~~ 25 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFN 25 (188)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999999876
No 236
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=85.27 E-value=0.21 Score=48.43 Aligned_cols=20 Identities=45% Similarity=0.791 Sum_probs=17.2
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|++|||||||+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 34579999999999999876
No 237
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=85.21 E-value=0.19 Score=53.74 Aligned_cols=21 Identities=19% Similarity=0.109 Sum_probs=18.4
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.+.+++|+|+|||||||++.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~ 413 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSI 413 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHH
T ss_pred ccceEEEecccCCCCHHHHHH
Confidence 456789999999999999877
No 238
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.21 E-value=0.24 Score=48.60 Aligned_cols=16 Identities=50% Similarity=0.821 Sum_probs=14.8
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|.|++||||||++.
T Consensus 49 ~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIV 64 (340)
T ss_dssp EEEECSSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999999876
No 239
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.15 E-value=0.24 Score=48.21 Aligned_cols=16 Identities=44% Similarity=0.706 Sum_probs=14.8
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|.|++|||||||+.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999999765
No 240
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.10 E-value=0.27 Score=41.51 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 7 ~i~v~G~~~~GKssl~~ 23 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQ 23 (168)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 48999999999999766
No 241
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=85.07 E-value=0.3 Score=41.00 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 6 ~i~v~G~~~~GKssl~~ 22 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTL 22 (168)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999765
No 242
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=85.03 E-value=0.32 Score=47.42 Aligned_cols=17 Identities=41% Similarity=0.505 Sum_probs=15.8
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++|||||||+.
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999999876
No 243
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=84.95 E-value=0.3 Score=41.03 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++++|++|+|||||..
T Consensus 3 ki~v~G~~~~GKSsli~ 19 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFN 19 (161)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999766
No 244
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=84.94 E-value=0.28 Score=51.55 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|+||||||||..
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr 156 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSR 156 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 245
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.87 E-value=0.28 Score=41.37 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 5 ~i~v~G~~~~GKssli~ 21 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVL 21 (170)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999865
No 246
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=84.86 E-value=0.29 Score=41.42 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 4 ki~~vG~~~~GKSsli~ 20 (166)
T 3q72_A 4 KVLLLGAPGVGKSALAR 20 (166)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999866
No 247
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=84.83 E-value=0.16 Score=50.72 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=18.4
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|.|+||+|||||..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln 191 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLN 191 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 58899999999999999876
No 248
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=84.82 E-value=0.28 Score=46.37 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=17.4
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.+..++|.|.+||||||++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~ 42 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVN 42 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHH
Confidence 345679999999999999876
No 249
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=84.78 E-value=0.31 Score=48.04 Aligned_cols=17 Identities=53% Similarity=0.745 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
++++.|.+|+|||||..
T Consensus 6 v~~i~G~~GaGKTTll~ 22 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLR 22 (318)
T ss_dssp EEEEEESSSSSCHHHHH
T ss_pred EEEEEecCCCCHHHHHH
Confidence 58999999999999765
No 250
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=84.78 E-value=0.25 Score=47.90 Aligned_cols=18 Identities=56% Similarity=0.763 Sum_probs=15.9
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|++|||||+|+.
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 358999999999999876
No 251
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=84.71 E-value=0.28 Score=52.19 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=17.9
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|+|++|||||||+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47789999999999999876
No 252
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=84.63 E-value=0.35 Score=48.29 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=18.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
.....++|+|++|||||+|+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 345689999999999999876
No 253
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=84.61 E-value=0.32 Score=41.00 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 5 ki~v~G~~~~GKssli~ 21 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTV 21 (167)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999765
No 254
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=84.54 E-value=0.34 Score=40.96 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 5 ~i~v~G~~~~GKssli~ 21 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLV 21 (170)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 48999999999999765
No 255
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=84.52 E-value=0.32 Score=41.61 Aligned_cols=17 Identities=41% Similarity=0.622 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 10 ~i~v~G~~~~GKSsli~ 26 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMH 26 (182)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 256
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.51 E-value=0.34 Score=52.79 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+||+|||||..
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLk 121 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALK 121 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 578999999999999999765
No 257
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=84.45 E-value=0.32 Score=42.62 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.6
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|+|++|+|||||..
T Consensus 48 ~~~i~vvG~~g~GKSsll~ 66 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLT 66 (193)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3479999999999999766
No 258
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=84.45 E-value=0.3 Score=41.50 Aligned_cols=17 Identities=41% Similarity=0.661 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 4 ki~ivG~~~~GKSsli~ 20 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAG 20 (169)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999766
No 259
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=84.31 E-value=0.33 Score=41.16 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 8 ~i~v~G~~~~GKssli~ 24 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVL 24 (170)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 48999999999999765
No 260
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=84.23 E-value=0.35 Score=41.31 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.8
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.++|+|.+|+|||||..
T Consensus 10 ~~i~v~G~~~~GKssli~ 27 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTI 27 (181)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 359999999999999765
No 261
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=84.22 E-value=0.36 Score=51.86 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|+||+|||||..
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~ 387 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMN 387 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999766
No 262
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=84.15 E-value=0.31 Score=47.24 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=16.2
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|.+||||||++.
T Consensus 76 ~iI~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQ 93 (281)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 469999999999999876
No 263
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=84.15 E-value=0.34 Score=41.28 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 6 ki~i~G~~~vGKSsl~~ 22 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLAS 22 (175)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCccHHHHHH
Confidence 58999999999999866
No 264
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=84.15 E-value=0.28 Score=46.11 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=16.6
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|+|++|||||+|+.
T Consensus 29 ~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp CSCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHH
Confidence 3578999999999999876
No 265
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=84.06 E-value=0.26 Score=47.66 Aligned_cols=16 Identities=50% Similarity=0.711 Sum_probs=14.9
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|+|++|||||+|+.
T Consensus 48 vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVR 63 (350)
T ss_dssp EEEECCGGGCTTHHHH
T ss_pred EEEECCCCccHHHHHH
Confidence 8999999999999876
No 266
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.01 E-value=0.39 Score=46.88 Aligned_cols=19 Identities=53% Similarity=0.728 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|.|++|||||||+.
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4579999999999999876
No 267
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=83.95 E-value=0.37 Score=50.50 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=17.7
Q ss_pred CCCCE--EEEEeCCCCCcccccc
Q 011235 332 KDGDV--ALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~--~lffGlSGtGKTTLs~ 352 (490)
+.|.. ++|.|.||+|||||..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln 60 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMD 60 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHH
T ss_pred cCCCeeEEEEECCCCCCHHHHHH
Confidence 45777 9999999999999876
No 268
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=83.92 E-value=0.33 Score=50.18 Aligned_cols=19 Identities=47% Similarity=0.714 Sum_probs=16.7
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|+|++|||||+|+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4579999999999999876
No 269
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.92 E-value=0.31 Score=51.14 Aligned_cols=19 Identities=47% Similarity=0.674 Sum_probs=16.9
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
.+.++|+|++|||||+|+.
T Consensus 215 prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHH
Confidence 4679999999999999876
No 270
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=83.83 E-value=0.36 Score=41.84 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=16.1
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|++|+|||||..
T Consensus 24 ~~i~v~G~~~~GKSsli~ 41 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLN 41 (195)
T ss_dssp CEEEEEEBTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999875
No 271
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=83.80 E-value=0.33 Score=41.00 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 5 ~i~v~G~~~~GKssli~ 21 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVL 21 (172)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999875
No 272
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=83.62 E-value=0.34 Score=40.93 Aligned_cols=17 Identities=41% Similarity=0.563 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 2 ki~~~G~~~~GKssl~~ 18 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILY 18 (164)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999999766
No 273
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=83.58 E-value=0.34 Score=41.49 Aligned_cols=17 Identities=29% Similarity=0.602 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 9 ~i~v~G~~~~GKSsli~ 25 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMN 25 (177)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999766
No 274
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=83.57 E-value=0.39 Score=54.86 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=19.2
Q ss_pred CCCCEEEEEeCCCCCccccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLSTD 353 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~~ 353 (490)
..++-++|.|+||+|||+|+.|
T Consensus 22 p~~~l~v~tG~SGSGKSsLafd 43 (916)
T 3pih_A 22 PKNRLVVITGVSGSGKSSLAMD 43 (916)
T ss_dssp ETTSEEEEEESTTSSSHHHHTT
T ss_pred CCCcEEEEECCCCCcHHHHHHH
Confidence 3477899999999999999985
No 275
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=83.54 E-value=0.38 Score=40.55 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 8 ~i~v~G~~~~GKssli~ 24 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVL 24 (170)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999765
No 276
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=83.52 E-value=0.3 Score=48.55 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.1
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
....++|+|++|||||||+.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 34569999999999999876
No 277
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=83.49 E-value=0.35 Score=51.74 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=22.8
Q ss_pred eeeccccccCCCCCEEEEEeCCCCCcccccc
Q 011235 322 LSLHSGCNMGKDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 322 L~~H~sani~~~g~~~lffGlSGtGKTTLs~ 352 (490)
+-+|+ ..+-..|..+.++|++|+|||||..
T Consensus 14 f~l~~-l~~~~~Gei~gLiGpNGaGKSTLlk 43 (538)
T 3ozx_A 14 FKLFG-LPTPKNNTILGVLGKNGVGKTTVLK 43 (538)
T ss_dssp CEEEC-CCCCCTTEEEEEECCTTSSHHHHHH
T ss_pred eeecC-CCCCCCCCEEEEECCCCCcHHHHHH
Confidence 34444 2344678999999999999999765
No 278
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=83.35 E-value=0.39 Score=40.76 Aligned_cols=18 Identities=44% Similarity=0.613 Sum_probs=16.0
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.++|+|++|+|||||..
T Consensus 8 ~~i~v~G~~~~GKssl~~ 25 (171)
T 1upt_A 8 MRILILGLDGAGKTTILY 25 (171)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 469999999999999866
No 279
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=83.29 E-value=0.36 Score=51.64 Aligned_cols=21 Identities=38% Similarity=0.714 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+||||||||..
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~ 312 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFAR 312 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999765
No 280
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=83.26 E-value=0.41 Score=40.79 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 16 ~i~v~G~~~~GKssli~ 32 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLIT 32 (179)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999766
No 281
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=83.19 E-value=0.27 Score=47.08 Aligned_cols=19 Identities=47% Similarity=0.662 Sum_probs=16.6
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|.|++|||||||+.
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3569999999999999876
No 282
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=83.08 E-value=0.37 Score=41.59 Aligned_cols=17 Identities=41% Similarity=0.446 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 13 ki~v~G~~~~GKSsli~ 29 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLY 29 (195)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 283
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=83.07 E-value=0.4 Score=40.50 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 8 ~i~v~G~~~~GKSsli~ 24 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMW 24 (170)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 48999999999999765
No 284
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=82.97 E-value=0.43 Score=51.90 Aligned_cols=21 Identities=52% Similarity=0.615 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+||+|||||..
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlk 135 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVK 135 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 578999999999999999765
No 285
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.91 E-value=0.36 Score=50.69 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
-+.++|+|++|||||+|+.
T Consensus 215 prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4679999999999999876
No 286
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=82.91 E-value=0.4 Score=43.68 Aligned_cols=20 Identities=45% Similarity=0.742 Sum_probs=17.7
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..+++.|.+|+|||+|+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l 48 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHH
Confidence 46789999999999999765
No 287
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=82.90 E-value=0.45 Score=44.28 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=17.6
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|.+||||||++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~ 34 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAK 34 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46689999999999999876
No 288
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=82.89 E-value=0.37 Score=41.15 Aligned_cols=17 Identities=41% Similarity=0.548 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 11 ~i~v~G~~~~GKssl~~ 27 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLL 27 (181)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999766
No 289
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=82.85 E-value=0.33 Score=48.52 Aligned_cols=19 Identities=37% Similarity=0.611 Sum_probs=16.5
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|+|++|||||+|+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3469999999999999876
No 290
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.69 E-value=0.36 Score=50.49 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHhcccCCeeeeccccccC-CCCCEEEEEeCCCCCcccccc
Q 011235 303 EMKKGLFSVMHYLMPKRQILSLHSGCNMG-KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 303 EmKK~iltl~~~~l~~~G~L~~H~sani~-~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|+.+.....+.+....++. .++ .-.+.++|+|++|||||+|+.
T Consensus 179 ~~k~~l~e~v~~pl~~p~~~~-----~~g~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 179 MQKQEIREAVELPLVQADLYE-----QIGIDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp HHHHHHHHHHHHHHHCHHHHH-----HHCCCCCCEEEEESCTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHH-----hCCCCCCceEEEECCCCCCHHHHHH
Confidence 567766655544332222221 122 224679999999999999876
No 291
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.69 E-value=0.4 Score=41.40 Aligned_cols=19 Identities=42% Similarity=0.550 Sum_probs=16.6
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|+|++|+|||||..
T Consensus 18 ~~~i~v~G~~~~GKssli~ 36 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILY 36 (183)
T ss_dssp CEEEEEEEETTSSHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHH
Confidence 3469999999999999876
No 292
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=82.69 E-value=0.43 Score=41.31 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++++|++|+|||||..
T Consensus 3 ki~v~G~~~~GKSsli~ 19 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIY 19 (190)
T ss_dssp EEEEEEBTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999999766
No 293
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=82.65 E-value=0.4 Score=48.16 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=17.7
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
....++|+|++|||||+|+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45789999999999999876
No 294
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=82.64 E-value=0.42 Score=41.71 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 23 ki~vvG~~~~GKSsli~ 39 (190)
T 3con_A 23 KLVVVGAGGVGKSALTI 39 (190)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999866
No 295
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=82.64 E-value=0.39 Score=41.46 Aligned_cols=17 Identities=29% Similarity=0.558 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 6 ki~v~G~~~~GKSsli~ 22 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTI 22 (189)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999865
No 296
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.62 E-value=0.35 Score=46.65 Aligned_cols=16 Identities=50% Similarity=0.804 Sum_probs=14.9
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|.|++|||||||+.
T Consensus 61 ~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTIL 76 (353)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999999876
No 297
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=82.58 E-value=0.39 Score=55.39 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=19.2
Q ss_pred CCCCEEEEEeCCCCCccccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLSTD 353 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~~ 353 (490)
..++-++|.|+||+|||+|+.|
T Consensus 44 P~~~lvv~tG~SGSGKSSLafd 65 (993)
T 2ygr_A 44 PRDALIVFTGLSGSGKSSLAFD 65 (993)
T ss_dssp ESSSEEEEEESTTSSHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHH
Confidence 3467899999999999999885
No 298
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=82.53 E-value=0.43 Score=40.96 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 20 ki~v~G~~~~GKSsli~ 36 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTL 36 (187)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999865
No 299
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=82.52 E-value=0.39 Score=45.55 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=17.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+..++++|+|+.|+||+|++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 345679999999999999776
No 300
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=82.52 E-value=0.39 Score=44.71 Aligned_cols=19 Identities=21% Similarity=0.127 Sum_probs=16.4
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|.|.+|+||||++.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~ 20 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVK 20 (241)
T ss_dssp CEEEEEEECTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 3468999999999999876
No 301
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=82.52 E-value=0.4 Score=55.18 Aligned_cols=21 Identities=43% Similarity=0.819 Sum_probs=18.9
Q ss_pred CCCEEEEEeCCCCCccccccc
Q 011235 333 DGDVALFFGLSGTGKTTLSTD 353 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~~ 353 (490)
.++-++|.|+||+|||+|+.|
T Consensus 43 ~~~lvv~tG~SGSGKSSLafd 63 (972)
T 2r6f_A 43 RGKLVVLTGLSGSGKSSLAFD 63 (972)
T ss_dssp TTSEEEEEESTTSSHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467899999999999999985
No 302
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=82.50 E-value=0.41 Score=49.75 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.6
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|.|++|+|||||..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHH
Confidence 34578899999999999665
No 303
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=82.48 E-value=0.4 Score=48.90 Aligned_cols=20 Identities=35% Similarity=0.649 Sum_probs=17.5
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..+++.|++|+|||||+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34589999999999999877
No 304
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=82.46 E-value=0.41 Score=54.23 Aligned_cols=34 Identities=21% Similarity=0.492 Sum_probs=24.9
Q ss_pred Ceeeecccc-----ccC---CCCCEEEEEeCCCCCccccccc
Q 011235 320 QILSLHSGC-----NMG---KDGDVALFFGLSGTGKTTLSTD 353 (490)
Q Consensus 320 G~L~~H~sa-----ni~---~~g~~~lffGlSGtGKTTLs~~ 353 (490)
..+-++|+- ||+ .-+.-++|.|+||+|||||+.|
T Consensus 14 ~~I~i~gar~hNLkni~v~iP~~~l~viTGvSGSGKSSLafd 55 (842)
T 2vf7_A 14 GFVQVRGARQHNLKDISVKVPRDALVVFTGVSGSGKSSLAFG 55 (842)
T ss_dssp TEEEEEEECSTTCCSEEEEEESSSEEEEESSTTSSHHHHHTT
T ss_pred CeEEEeeccccCCCCeeEEecCCCEEEEECCCCCCHHHHHHH
Confidence 456666652 222 3477899999999999999884
No 305
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=82.45 E-value=0.37 Score=48.13 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.3
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..+.+++|.|++|+||||++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 457789999999999999776
No 306
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=82.25 E-value=0.46 Score=41.56 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=16.5
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
--.++++|.+|+|||||..
T Consensus 23 ~~~i~v~G~~~~GKSsli~ 41 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFIN 41 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3569999999999999766
No 307
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=82.24 E-value=0.39 Score=50.07 Aligned_cols=18 Identities=44% Similarity=0.754 Sum_probs=16.2
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|++|||||||+.
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 468999999999999876
No 308
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=82.20 E-value=0.26 Score=47.89 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.6
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|+|++|||||+|+.
T Consensus 46 ~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp TCCEEEESCCCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4579999999999999875
No 309
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=82.08 E-value=0.46 Score=40.75 Aligned_cols=17 Identities=41% Similarity=0.558 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 12 ~i~v~G~~~~GKssli~ 28 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLV 28 (180)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999765
No 310
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=82.05 E-value=0.45 Score=42.16 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 22 ki~ivG~~~vGKSsL~~ 38 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVH 38 (184)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999875
No 311
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=82.03 E-value=0.42 Score=44.72 Aligned_cols=17 Identities=35% Similarity=0.694 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|+.|+||+|++.
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999766
No 312
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=82.02 E-value=0.42 Score=41.09 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 7 ~i~~~G~~~~GKssl~~ 23 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLI 23 (186)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999864
No 313
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=82.01 E-value=0.42 Score=49.40 Aligned_cols=19 Identities=42% Similarity=0.579 Sum_probs=17.0
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|+|++|||||+|+.
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999999876
No 314
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=82.00 E-value=0.46 Score=41.81 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 16 ki~v~G~~~~GKSsli~ 32 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTL 32 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 315
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=81.99 E-value=0.42 Score=40.90 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 8 ki~v~G~~~~GKssl~~ 24 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTT 24 (178)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999766
No 316
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=81.98 E-value=0.47 Score=40.43 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 17 ~i~v~G~~~~GKSsli~ 33 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLH 33 (179)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999766
No 317
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=81.87 E-value=0.49 Score=40.81 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 8 ki~~~G~~~~GKSsli~ 24 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTI 24 (181)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 58999999999999865
No 318
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=81.87 E-value=0.43 Score=44.10 Aligned_cols=18 Identities=39% Similarity=0.381 Sum_probs=16.0
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..+.+.|.+||||||++.
T Consensus 13 ~iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368999999999999877
No 319
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=81.82 E-value=0.49 Score=41.56 Aligned_cols=18 Identities=44% Similarity=0.578 Sum_probs=16.1
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.++|+|++|+|||||..
T Consensus 17 ~ki~ivG~~~vGKSsL~~ 34 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLK 34 (181)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999866
No 320
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=81.78 E-value=0.42 Score=44.89 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=16.9
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|.-++|.|++|+||||++.
T Consensus 6 g~~i~~eG~~gsGKsT~~~ 24 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRD 24 (213)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHH
Confidence 5679999999999999776
No 321
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=81.76 E-value=0.47 Score=40.72 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 14 ki~v~G~~~~GKSsli~ 30 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVL 30 (181)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999865
No 322
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=81.66 E-value=0.52 Score=40.75 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=9.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 10 ki~v~G~~~~GKssl~~ 26 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLF 26 (183)
T ss_dssp EEEEECCCCC-------
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999866
No 323
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=81.56 E-value=0.51 Score=40.78 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 12 ki~v~G~~~~GKSsli~ 28 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLH 28 (186)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999776
No 324
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=81.48 E-value=0.4 Score=51.49 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=16.9
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..++|+|++|||||||+.
T Consensus 60 g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp TCCEEEECCTTSSHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHH
Confidence 4589999999999999876
No 325
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=81.42 E-value=0.49 Score=41.51 Aligned_cols=17 Identities=41% Similarity=0.628 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 27 ki~v~G~~~~GKSsLi~ 43 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLS 43 (193)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 49999999999999766
No 326
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=81.39 E-value=0.51 Score=44.41 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=16.9
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|.-++|.|++|+||||++.
T Consensus 3 g~~i~~eG~~gsGKsT~~~ 21 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARN 21 (213)
T ss_dssp CCEEEEEECTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 6679999999999999766
No 327
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=81.39 E-value=0.46 Score=41.18 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 16 ki~vvG~~~~GKssL~~ 32 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLK 32 (198)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 328
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=81.34 E-value=0.5 Score=40.83 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 20 ki~v~G~~~~GKSsl~~ 36 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTI 36 (183)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999866
No 329
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=81.26 E-value=0.44 Score=48.14 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=16.1
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++++|++|+|||||+.
T Consensus 6 ~~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 368999999999999876
No 330
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=81.26 E-value=0.5 Score=50.42 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|++|+|||||..
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk 330 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVK 330 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 331
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=81.22 E-value=0.51 Score=51.37 Aligned_cols=21 Identities=43% Similarity=0.726 Sum_probs=18.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|+||+|||||..
T Consensus 376 ~~GEiv~iiG~NGsGKSTLlk 396 (608)
T 3j16_B 376 SDSEILVMMGENGTGKTTLIK 396 (608)
T ss_dssp CTTCEEEEESCTTSSHHHHHH
T ss_pred ccceEEEEECCCCCcHHHHHH
Confidence 357899999999999999765
No 332
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.19 E-value=0.39 Score=50.13 Aligned_cols=18 Identities=39% Similarity=0.684 Sum_probs=16.2
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
+.++|+|++|||||.|+.
T Consensus 183 rGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCEEEESCSSSSHHHHHH
T ss_pred CceEEeCCCCCCHHHHHH
Confidence 569999999999999876
No 333
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=81.17 E-value=0.53 Score=45.19 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=17.0
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..++|.|++|+||||++.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~ 45 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQ 45 (236)
T ss_dssp CCEEEEEESTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5679999999999999776
No 334
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=81.11 E-value=0.52 Score=40.48 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=15.9
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.++|+|.+|+|||||..
T Consensus 9 ~ki~v~G~~~~GKssl~~ 26 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLI 26 (182)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 469999999999999765
No 335
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=81.09 E-value=0.46 Score=45.33 Aligned_cols=20 Identities=40% Similarity=0.597 Sum_probs=14.8
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|.-++|.|++|+||||++.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~ 43 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQ 43 (227)
T ss_dssp CCCEEEEECCC---CHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46789999999999999776
No 336
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=81.07 E-value=0.47 Score=50.51 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=17.0
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|.|++|||||||..
T Consensus 259 ~g~~i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLN 278 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45679999999999999655
No 337
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.04 E-value=0.5 Score=49.76 Aligned_cols=21 Identities=38% Similarity=0.494 Sum_probs=18.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++++|++|+|||||..
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~ 299 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVS 299 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHH
Confidence 347799999999999999766
No 338
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=80.98 E-value=0.52 Score=41.23 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=16.1
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|++|+|||||..
T Consensus 18 ~ki~v~G~~~~GKSsl~~ 35 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIIN 35 (199)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 369999999999999876
No 339
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=80.92 E-value=0.5 Score=51.03 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=17.5
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|+|||||||++.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~ 414 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIAR 414 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHH
Confidence 45679999999999999877
No 340
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=80.88 E-value=0.45 Score=48.32 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=16.5
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..+++.|+||+|||||+.
T Consensus 3 ~~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHH
Confidence 3468999999999999877
No 341
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=80.87 E-value=0.49 Score=40.87 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 9 ki~v~G~~~~GKSsli~ 25 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVL 25 (208)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999865
No 342
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=80.87 E-value=0.52 Score=43.64 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 31 ~i~lvG~~g~GKStlin 47 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGN 47 (239)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999776
No 343
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=80.85 E-value=0.48 Score=46.49 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.+++.|+||+|||||..
T Consensus 20 ~I~lvG~nG~GKSTLl~ 36 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLIN 36 (301)
T ss_dssp EEEEEEETTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999999766
No 344
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=80.84 E-value=0.44 Score=49.25 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=16.7
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|+|++|+|||||+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4578999999999999876
No 345
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=80.80 E-value=0.52 Score=47.14 Aligned_cols=21 Identities=24% Similarity=0.223 Sum_probs=18.3
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.|.|.+|+|||||..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~ 73 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTID 73 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 457789999999999999766
No 346
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=80.77 E-value=0.46 Score=42.57 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=15.9
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++++|++|+|||||..
T Consensus 26 ~ki~lvG~~~vGKSsLi~ 43 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLH 43 (198)
T ss_dssp EEEEEEEETTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468999999999999766
No 347
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=80.67 E-value=0.5 Score=42.35 Aligned_cols=17 Identities=41% Similarity=0.661 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++|+|||||..
T Consensus 25 ki~vvG~~~vGKSsLi~ 41 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAG 41 (195)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999866
No 348
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=80.64 E-value=0.49 Score=42.67 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=15.9
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|.+|+|||||..
T Consensus 31 ~~i~i~G~~g~GKTTl~~ 48 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIE 48 (221)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 469999999999999866
No 349
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=80.54 E-value=0.56 Score=40.92 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 18 ki~v~G~~~~GKSsli~ 34 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLL 34 (196)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999766
No 350
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=80.50 E-value=0.55 Score=41.12 Aligned_cols=17 Identities=35% Similarity=0.432 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 22 ki~v~G~~~~GKSsli~ 38 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTY 38 (189)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 351
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=80.42 E-value=0.54 Score=41.10 Aligned_cols=17 Identities=35% Similarity=0.341 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 9 ki~v~G~~~vGKSsli~ 25 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLH 25 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999866
No 352
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=80.37 E-value=0.59 Score=40.98 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=16.0
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.++|+|.+|+|||||..
T Consensus 22 ~ki~v~G~~~~GKSsli~ 39 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIIN 39 (190)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 469999999999999766
No 353
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=80.36 E-value=0.5 Score=48.10 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=16.2
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..+++.|+||+|||||+.
T Consensus 8 ~lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCcCcHHHHHH
Confidence 378999999999999886
No 354
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=80.29 E-value=0.58 Score=47.22 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=17.7
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++++|++|+|||||+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal 79 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVAL 79 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46789999999999999865
No 355
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=80.21 E-value=0.57 Score=50.93 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|++|+|||||..
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk 400 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVK 400 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999999766
No 356
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=80.15 E-value=0.67 Score=43.89 Aligned_cols=20 Identities=45% Similarity=0.589 Sum_probs=17.7
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|.-++|.|++|+||||++.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~ 23 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCN 23 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46789999999999999776
No 357
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=80.11 E-value=0.72 Score=40.95 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 35 ki~vvG~~~~GKSsli~ 51 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLL 51 (199)
T ss_dssp EEEEECCTTSCCTTTTT
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999999876
No 358
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=80.07 E-value=0.57 Score=41.24 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 25 ki~v~G~~~~GKSsli~ 41 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLF 41 (191)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 49999999999999866
No 359
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=80.06 E-value=0.56 Score=40.99 Aligned_cols=18 Identities=33% Similarity=0.577 Sum_probs=15.8
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.++|+|++|+|||||..
T Consensus 9 ~ki~vvG~~~~GKSsli~ 26 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVL 26 (199)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 369999999999999865
No 360
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=80.05 E-value=0.52 Score=48.08 Aligned_cols=19 Identities=42% Similarity=0.709 Sum_probs=17.0
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..++|+|++|+|||||+.
T Consensus 61 G~i~~I~GppGsGKSTLal 79 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLAL 79 (356)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5689999999999999865
No 361
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=79.90 E-value=0.49 Score=44.89 Aligned_cols=17 Identities=47% Similarity=0.593 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+||||++.
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 48999999999999876
No 362
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=79.86 E-value=0.61 Score=40.55 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=16.5
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
.-.++++|++|+|||||..
T Consensus 18 ~~~i~v~G~~~~GKssl~~ 36 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILK 36 (186)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHH
Confidence 3469999999999999876
No 363
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=79.78 E-value=0.62 Score=45.91 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=18.3
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|+|++|+|||||+.
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~ 125 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCH 125 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHH
Confidence 347889999999999999766
No 364
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=79.76 E-value=0.63 Score=42.07 Aligned_cols=18 Identities=39% Similarity=0.451 Sum_probs=15.8
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|.+|+|||||..
T Consensus 39 ~~i~ivG~~gvGKTtl~~ 56 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIE 56 (226)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 468999999999999876
No 365
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=79.76 E-value=0.51 Score=44.60 Aligned_cols=17 Identities=47% Similarity=0.606 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++||||||++.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 38999999999999876
No 366
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=79.70 E-value=0.54 Score=50.00 Aligned_cols=19 Identities=42% Similarity=0.583 Sum_probs=17.1
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..++|||+||+|||||..
T Consensus 151 Gq~~~i~G~sGvGKTtL~~ 169 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQ 169 (473)
T ss_dssp TCEEEEECCSSSCHHHHHH
T ss_pred CCEEEEECCCCCCccHHHH
Confidence 5679999999999999877
No 367
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=79.69 E-value=0.61 Score=40.83 Aligned_cols=17 Identities=35% Similarity=0.428 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 24 ki~vvG~~~~GKSsli~ 40 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLF 40 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999766
No 368
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=79.66 E-value=0.79 Score=53.98 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.5
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+.+.|.||+|||||..
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~ 1123 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVA 1123 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHH
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 457889999999999999766
No 369
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=79.65 E-value=0.67 Score=41.12 Aligned_cols=21 Identities=43% Similarity=0.613 Sum_probs=16.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
.....++|+|++|+|||||..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~ 41 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLH 41 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHH
Confidence 334579999999999999766
No 370
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=79.65 E-value=0.56 Score=41.43 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 23 ki~vvG~~~vGKTsLi~ 39 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTV 39 (187)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 59999999999999865
No 371
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=79.64 E-value=0.81 Score=48.67 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=16.2
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..+++.|++|+||||++.
T Consensus 36 ~lIvlvGlpGSGKSTia~ 53 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISK 53 (520)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999876
No 372
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=79.48 E-value=0.62 Score=41.63 Aligned_cols=18 Identities=44% Similarity=0.658 Sum_probs=16.0
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|++|+|||||..
T Consensus 8 ~ki~vvG~~~~GKTsli~ 25 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFV 25 (214)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 469999999999999876
No 373
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=79.44 E-value=0.48 Score=40.78 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 9 ki~~vG~~~vGKTsli~ 25 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIH 25 (178)
T ss_dssp EEEEECCGGGCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999876
No 374
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=79.39 E-value=0.66 Score=41.16 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=15.7
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.++|+|++|+|||||..
T Consensus 21 ~ki~~vG~~~vGKTsLi~ 38 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQK 38 (196)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999854
No 375
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=79.33 E-value=0.67 Score=40.49 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=16.1
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.++|+|++|+|||||..
T Consensus 17 ~~i~v~G~~~~GKssl~~ 34 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILY 34 (187)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 469999999999999876
No 376
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=79.25 E-value=0.62 Score=44.43 Aligned_cols=21 Identities=38% Similarity=0.494 Sum_probs=18.1
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|++|+||||++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~ 39 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSH 39 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 346779999999999999776
No 377
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=79.24 E-value=0.59 Score=47.21 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=14.4
Q ss_pred EEEEEeCCCCCccccc
Q 011235 336 VALFFGLSGTGKTTLS 351 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs 351 (490)
..+++|++|+|||||-
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7889999999999964
No 378
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=79.14 E-value=0.68 Score=40.85 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 25 ki~vvG~~~~GKSsli~ 41 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVC 41 (192)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999765
No 379
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=79.14 E-value=0.63 Score=49.49 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=16.4
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|+||||||||..
T Consensus 30 e~~~liG~nGsGKSTLl~ 47 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMA 47 (483)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 889999999999999755
No 380
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=79.13 E-value=0.65 Score=41.03 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 10 ki~v~G~~~~GKSsli~ 26 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLF 26 (203)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 381
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=79.13 E-value=0.65 Score=40.96 Aligned_cols=17 Identities=41% Similarity=0.638 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 10 ki~v~G~~~~GKSsli~ 26 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMN 26 (207)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999766
No 382
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=79.09 E-value=0.69 Score=41.14 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 26 ki~vvG~~~~GKSsli~ 42 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAH 42 (201)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 59999999999999876
No 383
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=79.09 E-value=0.62 Score=40.60 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=16.0
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.++|+|++|+|||||..
T Consensus 22 ~~i~v~G~~~~GKSsli~ 39 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILY 39 (181)
T ss_dssp EEEEEEEETTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999866
No 384
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=79.01 E-value=0.65 Score=40.83 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 23 ki~v~G~~~~GKSsli~ 39 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLL 39 (191)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 49999999999999875
No 385
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=78.98 E-value=0.55 Score=52.47 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=18.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..+..++|+|++|||||||+.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHH
Confidence 346789999999999999876
No 386
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.96 E-value=0.59 Score=49.30 Aligned_cols=45 Identities=22% Similarity=0.405 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHhcccCCeeeeccccccC-CCCCEEEEEeCCCCCcccccc
Q 011235 303 EMKKGLFSVMHYLMPKRQILSLHSGCNMG-KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 303 EmKK~iltl~~~~l~~~G~L~~H~sani~-~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|+.+--...+-+....++. ..+ .-.+.++|+|++|||||.|+.
T Consensus 189 ~~k~~L~e~v~~Pl~~pe~f~-----~~Gi~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 189 SQIQEIKESVELPLTHPELYE-----EMGIKPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp HHHHHHHHHHHHHHHCCHHHH-----HHTCCCCSEEEEESSTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHH-----hCCCCCCCCCceECCCCchHHHHHH
Confidence 566666555544332222221 122 224679999999999999876
No 387
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=78.95 E-value=0.7 Score=41.05 Aligned_cols=17 Identities=41% Similarity=0.548 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 10 ki~v~G~~~~GKSsli~ 26 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLL 26 (206)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 388
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=78.93 E-value=0.7 Score=48.06 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=15.6
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++|+|||||..
T Consensus 71 ~valvG~nGaGKSTLln 87 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFIN 87 (413)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 79999999999999766
No 389
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=78.90 E-value=0.68 Score=40.22 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 17 ~i~v~G~~~~GKssli~ 33 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLL 33 (195)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999766
No 390
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=78.85 E-value=0.62 Score=40.97 Aligned_cols=17 Identities=29% Similarity=0.304 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 25 ki~~vG~~~~GKSsl~~ 41 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLL 41 (194)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999876
No 391
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=78.83 E-value=0.65 Score=45.10 Aligned_cols=18 Identities=39% Similarity=0.661 Sum_probs=15.9
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|++|+|||||+.
T Consensus 39 ~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp SEEEEESCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999999876
No 392
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=78.79 E-value=0.68 Score=40.96 Aligned_cols=17 Identities=35% Similarity=0.601 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 28 ki~vvG~~~~GKSsLi~ 44 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLME 44 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999999766
No 393
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=78.65 E-value=0.61 Score=46.53 Aligned_cols=21 Identities=38% Similarity=0.385 Sum_probs=18.2
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|+|++|+|||||+.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 356789999999999999766
No 394
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=78.61 E-value=0.74 Score=42.72 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=16.6
Q ss_pred CCCCEEEEEeCCCCCcccc
Q 011235 332 KDGDVALFFGLSGTGKTTL 350 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTL 350 (490)
..|+.+++.|++||||||+
T Consensus 74 ~~g~~~~i~g~TGsGKTt~ 92 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQ 92 (235)
T ss_dssp HHCSEEEEECCTTSSHHHH
T ss_pred hcCCEEEEEeCCCCCcHHh
Confidence 3578999999999999984
No 395
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=78.58 E-value=0.69 Score=40.85 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.9
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.++|+|++|+|||||..
T Consensus 29 ~ki~v~G~~~vGKSsli~ 46 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVV 46 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 359999999999999766
No 396
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=78.56 E-value=0.66 Score=50.95 Aligned_cols=20 Identities=50% Similarity=0.675 Sum_probs=17.4
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|+|||||||++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr 70 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSM 70 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHH
Confidence 45579999999999999876
No 397
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=78.54 E-value=0.61 Score=47.20 Aligned_cols=18 Identities=28% Similarity=0.567 Sum_probs=16.3
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..+++.|++|+|||||+.
T Consensus 11 ~~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCccCHHHHHH
Confidence 468999999999999887
No 398
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=78.45 E-value=0.65 Score=40.98 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.9
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.++|+|++|+|||||..
T Consensus 21 ~ki~~~G~~~~GKssl~~ 38 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVV 38 (201)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 359999999999999865
No 399
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=78.43 E-value=0.74 Score=41.10 Aligned_cols=17 Identities=41% Similarity=0.554 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 27 ki~v~G~~~~GKSsLi~ 43 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLH 43 (200)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999876
No 400
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.43 E-value=0.53 Score=50.02 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=16.9
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
-+.++|+|++|||||+|+.
T Consensus 243 prGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CSEEEECSCTTSSHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHH
Confidence 4679999999999999876
No 401
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=78.21 E-value=0.77 Score=40.37 Aligned_cols=18 Identities=33% Similarity=0.682 Sum_probs=15.3
Q ss_pred CCEEEEEeCCCCCccccc
Q 011235 334 GDVALFFGLSGTGKTTLS 351 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs 351 (490)
....+|.|+.|+|||||.
T Consensus 23 ~g~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLL 40 (149)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 447899999999999953
No 402
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=78.20 E-value=0.75 Score=41.64 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 28 ki~lvG~~~vGKSsLi~ 44 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVR 44 (201)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999766
No 403
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=78.12 E-value=0.66 Score=45.26 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=17.7
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|+|.+|+|||||+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46789999999999999876
No 404
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=78.10 E-value=0.76 Score=41.15 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 27 ki~vvG~~~~GKSsli~ 43 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLI 43 (207)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999866
No 405
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=78.10 E-value=0.67 Score=49.04 Aligned_cols=18 Identities=44% Similarity=0.597 Sum_probs=16.0
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|++|||||||+.
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999999876
No 406
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=78.06 E-value=0.63 Score=45.56 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=16.7
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|.|++|||||+++.
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TSCEEEESCTTSCHHHHHH
T ss_pred CCcEEEECCCCchHHHHHH
Confidence 4579999999999999876
No 407
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=78.03 E-value=0.77 Score=41.21 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=15.9
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.++|+|++|+|||||..
T Consensus 31 ~ki~vvG~~~~GKSsLi~ 48 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLI 48 (204)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred EEEEEECcCCCCHHHHHH
Confidence 469999999999999874
No 408
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=78.03 E-value=0.61 Score=49.63 Aligned_cols=17 Identities=41% Similarity=0.610 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|||||||+.
T Consensus 66 GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 49999999999999876
No 409
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=78.02 E-value=0.5 Score=41.49 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=4.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 22 ~i~v~G~~~~GKssli~ 38 (208)
T 2yc2_C 22 KVAVVGEATVGKSALIS 38 (208)
T ss_dssp EEEEC------------
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999876
No 410
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=77.89 E-value=0.69 Score=40.99 Aligned_cols=18 Identities=39% Similarity=0.475 Sum_probs=15.9
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.++|+|++|+|||||..
T Consensus 21 ~~i~v~G~~~~GKSsli~ 38 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLV 38 (213)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999765
No 411
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=77.88 E-value=0.71 Score=48.76 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|+|++|||||+|+.
T Consensus 238 ~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHH
Confidence 4579999999999999876
No 412
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=77.78 E-value=0.74 Score=40.84 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=16.0
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.++|+|++|+|||||..
T Consensus 29 ~ki~v~G~~~~GKSsli~ 46 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLM 46 (199)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 359999999999999776
No 413
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=77.77 E-value=0.76 Score=40.40 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.9
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.++|+|++|+|||||..
T Consensus 23 ~ki~v~G~~~~GKSsli~ 40 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVN 40 (188)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 359999999999999766
No 414
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.76 E-value=0.64 Score=44.01 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=14.9
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|+|++|+||||++.
T Consensus 45 ~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVH 60 (323)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECcCCCCHHHHHH
Confidence 8999999999999876
No 415
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=77.74 E-value=0.75 Score=41.22 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 13 ki~vvG~~~~GKSsli~ 29 (218)
T 4djt_A 13 KICLIGDGGVGKTTYIN 29 (218)
T ss_dssp EEEEECCTTSSHHHHHC
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999776
No 416
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=77.61 E-value=0.76 Score=41.99 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=16.2
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|.+|+|||||..
T Consensus 30 ~kI~vvG~~~vGKSsLin 47 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMN 47 (228)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 469999999999999876
No 417
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=77.50 E-value=0.8 Score=43.54 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 5 ~i~lvG~~g~GKTTL~n 21 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFN 21 (271)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999866
No 418
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=77.48 E-value=0.74 Score=40.19 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=16.4
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
.-.++++|++|+|||||..
T Consensus 22 ~~~i~v~G~~~~GKssli~ 40 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILY 40 (189)
T ss_dssp CEEEEEEEETTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3469999999999999766
No 419
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.46 E-value=0.72 Score=48.47 Aligned_cols=18 Identities=39% Similarity=0.689 Sum_probs=16.5
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|++|||||||+.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 689999999999999876
No 420
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=77.44 E-value=0.81 Score=41.30 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 17 ki~v~G~~~~GKSsli~ 33 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVK 33 (221)
T ss_dssp EEEEEECTTSSHHHHHT
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999766
No 421
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=77.31 E-value=0.71 Score=41.34 Aligned_cols=17 Identities=47% Similarity=0.491 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 27 ki~vvG~~~~GKSsLi~ 43 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLY 43 (217)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 49999999999999766
No 422
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=77.21 E-value=0.7 Score=47.93 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=16.5
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...+++.|++|+||||++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~ 57 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISK 57 (469)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 3469999999999999876
No 423
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=77.19 E-value=0.78 Score=40.78 Aligned_cols=19 Identities=37% Similarity=0.434 Sum_probs=16.6
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
.-.++|+|++|+|||||..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~ 47 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILY 47 (192)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHH
Confidence 3469999999999999876
No 424
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=77.11 E-value=0.45 Score=47.66 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=16.7
Q ss_pred CCCCEEEEEeCCCCCccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLS 351 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs 351 (490)
..| ..+|.|++|+|||||.
T Consensus 59 ~~G-~~~lvG~NGaGKStLl 77 (415)
T 4aby_A 59 GGG-FCAFTGETGAGKSIIV 77 (415)
T ss_dssp CSS-EEEEEESHHHHHHHHT
T ss_pred CCC-cEEEECCCCCCHHHHH
Confidence 456 9999999999999976
No 425
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=77.09 E-value=0.85 Score=39.97 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 20 ki~v~G~~~~GKssli~ 36 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLM 36 (194)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 426
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=77.09 E-value=0.53 Score=49.32 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=17.6
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+.+++|.|++|+||||+++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46789999999999999776
No 427
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=76.98 E-value=0.85 Score=41.24 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 36 ki~vvG~~~vGKSsli~ 52 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLM 52 (214)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999866
No 428
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=76.92 E-value=0.65 Score=45.59 Aligned_cols=20 Identities=40% Similarity=0.705 Sum_probs=17.7
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|.+++|.|.+|+||||++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 67789999999999999776
No 429
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=76.87 E-value=0.84 Score=42.66 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=16.0
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|.+|+|||||..
T Consensus 23 ~~I~lvG~~g~GKStl~n 40 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGN 40 (260)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 369999999999999876
No 430
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=76.76 E-value=0.81 Score=40.81 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 11 ki~i~G~~~~GKTsli~ 27 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLI 27 (212)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 431
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=76.70 E-value=0.8 Score=48.68 Aligned_cols=19 Identities=21% Similarity=0.574 Sum_probs=17.0
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++|+|++|||||+|+.
T Consensus 41 ~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp TCEEEEECCSSSSHHHHHH
T ss_pred CCeeEeecCchHHHHHHHH
Confidence 4589999999999999876
No 432
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=76.37 E-value=0.92 Score=40.41 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 27 ki~vvG~~~~GKSsli~ 43 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLI 43 (201)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999765
No 433
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=76.33 E-value=0.75 Score=46.87 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..++|+|++|||||||+.
T Consensus 123 gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp SEEEEEECSCSSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568999999999999877
No 434
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=76.31 E-value=0.81 Score=40.86 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.+++.|++|+|||||..
T Consensus 8 kv~lvG~~~vGKSsL~~ 24 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLAN 24 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999876
No 435
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=76.30 E-value=0.54 Score=42.24 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=16.6
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|+|.+|+|||||..
T Consensus 29 ~~~i~v~G~~~~GKSslin 47 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAIN 47 (223)
T ss_dssp SCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 3479999999999999876
No 436
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=76.29 E-value=0.89 Score=43.37 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++++|.+|+|||||..
T Consensus 10 ~I~vvG~~g~GKSTLin 26 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLIN 26 (274)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999875
No 437
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=76.28 E-value=0.82 Score=47.81 Aligned_cols=17 Identities=41% Similarity=0.655 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|+||+|||||+.
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 58899999999999877
No 438
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=76.17 E-value=0.81 Score=48.12 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.6
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..+++||+||+|||||..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHH
Confidence 36789999999999999875
No 439
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=75.84 E-value=0.88 Score=41.22 Aligned_cols=17 Identities=35% Similarity=0.341 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 30 ki~vvG~~~vGKSsLi~ 46 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLH 46 (205)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999866
No 440
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=75.72 E-value=1.7 Score=45.28 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHhcccCCeeeeccccccCCCCCEEEEEeCCCCCcccccc
Q 011235 303 EMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 303 EmKK~iltl~~~~l~~~G~L~~H~sani~~~g~~~lffGlSGtGKTTLs~ 352 (490)
+++|.+..-+..++.... -..+.. .+.+++|.|++|+||||++.
T Consensus 73 ~~~~~v~~~L~~~~~~~~-----~~i~l~-~~~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 73 VILATVYEALKEALGGEA-----RLPVLK-DRNLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp HHHHHHHHHHHHHTTSSC-----CCCCCC-SSEEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc-----ccccCC-CCeEEEEECCCCCCHHHHHH
Confidence 456666655544443211 112233 56789999999999999776
No 441
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=75.59 E-value=0.94 Score=43.15 Aligned_cols=18 Identities=28% Similarity=0.600 Sum_probs=16.3
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..+++.|+.|+|||||..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 589999999999999876
No 442
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=75.55 E-value=0.98 Score=46.10 Aligned_cols=20 Identities=20% Similarity=0.541 Sum_probs=17.0
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+...+|.|++|+|||||..
T Consensus 25 ~~~~~~i~G~nG~GKstll~ 44 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMD 44 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36789999999999999544
No 443
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=75.48 E-value=0.77 Score=46.14 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=17.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..+..++|+|++|||||++..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHH
Confidence 346689999999999999765
No 444
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=75.33 E-value=0.9 Score=47.21 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|+||+|||||..
T Consensus 33 ~I~lvG~sGaGKSTLln 49 (418)
T 2qag_C 33 TLMVVGESGLGKSTLIN 49 (418)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 47999999999999766
No 445
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=75.32 E-value=0.75 Score=44.19 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=16.4
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
...++|.|+.||||||++.
T Consensus 58 kn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp CSEEEEESCGGGCHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHH
Confidence 4569999999999999765
No 446
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=75.18 E-value=1 Score=40.30 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 31 ki~vvG~~~vGKSsli~ 47 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQ 47 (201)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 49999999999999776
No 447
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=75.07 E-value=1 Score=46.92 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=15.8
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|++|||||+|+.
T Consensus 202 ~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CEEEEESCTTTTTHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 357999999999999876
No 448
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=75.00 E-value=1.1 Score=40.87 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=16.7
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|...+++|+-|+||||++.
T Consensus 3 g~i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELL 21 (184)
T ss_dssp CCEEEEEESTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 6688999999999999764
No 449
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=74.53 E-value=1 Score=42.57 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 23 ~I~lvG~~g~GKSSlin 39 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGN 39 (247)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 59999999999999776
No 450
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=74.48 E-value=0.89 Score=41.17 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.8
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..+++.|.+||||||++.
T Consensus 4 ~~i~i~G~~gsGkst~~~ 21 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAK 21 (219)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999999876
No 451
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=74.23 E-value=1.1 Score=51.71 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.7
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+.+.|++|+|||||..
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk 479 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMR 479 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999765
No 452
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=74.10 E-value=1.1 Score=43.98 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+++.|.+|+|||||+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l 86 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFAL 86 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHH
Confidence 568899999999999999876
No 453
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=74.00 E-value=1.2 Score=52.58 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=18.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|+||+|||||..
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ 462 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIIS 462 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHH
T ss_pred cCCcEEEEEecCCCcHHHHHH
Confidence 568899999999999999766
No 454
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=76.17 E-value=0.66 Score=41.26 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=15.9
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.++|+|++|+|||||..
T Consensus 31 ~ki~v~G~~~~GKSsli~ 48 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLI 48 (204)
Confidence 459999999999999875
No 455
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=73.92 E-value=1 Score=40.94 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 29 ki~vvG~~~vGKSsL~~ 45 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQ 45 (214)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 49999999999999876
No 456
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=73.80 E-value=1.2 Score=52.47 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+++.|+||||||||..
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ 434 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQ 434 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 568999999999999999765
No 457
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=73.65 E-value=0.99 Score=44.49 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=17.2
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+.+++|.|.+|+||||++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp SEEEEEECSSCSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 7789999999999999776
No 458
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=73.21 E-value=1.2 Score=50.55 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.0
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..++|.|+||+|||||..
T Consensus 521 ~~Geiv~I~G~nGSGKSTLl~ 541 (842)
T 2vf7_A 521 PLGVMTSVTGVSGSGKSTLVS 541 (842)
T ss_dssp ESSSEEEEECCTTSSHHHHCC
T ss_pred cCCCEEEEEcCCCcCHHHHHH
Confidence 468899999999999999876
No 459
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=73.03 E-value=1.2 Score=44.72 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=17.5
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
++..++|.|.+|+|||||..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln 92 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIE 92 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHH
Confidence 45689999999999999766
No 460
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=72.92 E-value=1.1 Score=42.56 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=16.1
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..+++.|+.|+|||||..
T Consensus 31 ~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 489999999999999876
No 461
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=72.90 E-value=1 Score=46.00 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=16.2
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
| .++++|++|+|||||+.
T Consensus 29 G-iteI~G~pGsGKTtL~L 46 (333)
T 3io5_A 29 G-LLILAGPSKSFKSNFGL 46 (333)
T ss_dssp E-EEEEEESSSSSHHHHHH
T ss_pred C-eEEEECCCCCCHHHHHH
Confidence 5 79999999999999866
No 462
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=72.80 E-value=1.4 Score=43.33 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
..+|.|++|+|||||.-
T Consensus 26 ~~~i~G~NGsGKS~ll~ 42 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIID 42 (322)
T ss_dssp EEEEECCTTTCSTHHHH
T ss_pred cEEEECCCCCcHHHHHH
Confidence 89999999999999543
No 463
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=72.74 E-value=1.1 Score=40.68 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+|||||..
T Consensus 15 ki~v~G~~~vGKSsli~ 31 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLS 31 (223)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 59999999999999766
No 464
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=72.53 E-value=1.3 Score=40.75 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=16.1
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.....+|+|+.|+|||||..
T Consensus 22 ~~~~~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLD 41 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHH
Confidence 34578999999999999543
No 465
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=72.52 E-value=1.1 Score=44.26 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=17.5
Q ss_pred cCCCCCEEEEEeCCCCCcccccc
Q 011235 330 MGKDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 330 i~~~g~~~lffGlSGtGKTTLs~ 352 (490)
+..+....+|+|+.|+|||||.-
T Consensus 19 i~f~~~~~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 19 VEFKEGINLIIGQNGSGKSSLLD 41 (339)
T ss_dssp EECCSEEEEEECCTTSSHHHHHH
T ss_pred EcCCCCeEEEECCCCCCHHHHHH
Confidence 33444578999999999999543
No 466
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=72.35 E-value=1.2 Score=45.10 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=17.7
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..++|+|.+|+|||||+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal 81 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTL 81 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46789999999999999876
No 467
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=71.81 E-value=1.3 Score=41.83 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=16.0
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
-.++|+|.+|+|||||..
T Consensus 37 ~~I~lvG~~g~GKSSLin 54 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVN 54 (262)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 369999999999999876
No 468
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=71.80 E-value=1.3 Score=41.92 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=15.6
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++++|.+|+|||||..
T Consensus 41 ~I~vvG~~g~GKSSLin 57 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVN 57 (270)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999999866
No 469
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=71.72 E-value=1.1 Score=47.20 Aligned_cols=18 Identities=33% Similarity=0.601 Sum_probs=16.0
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|+|++||||||++.
T Consensus 51 ~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 459999999999999766
No 470
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=71.33 E-value=1.1 Score=46.73 Aligned_cols=19 Identities=42% Similarity=0.751 Sum_probs=16.9
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
..+++|.|++|+|||||++
T Consensus 99 ~~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCCEEEECCSSSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3579999999999999877
No 471
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=71.26 E-value=1.1 Score=47.20 Aligned_cols=19 Identities=37% Similarity=0.646 Sum_probs=17.1
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
..+++|.|++|+||||+++
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 5689999999999999776
No 472
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=71.22 E-value=1.2 Score=47.70 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=17.4
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.+..++|.|++|+||||++.
T Consensus 371 ~~~~I~l~G~~GsGKSTia~ 390 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAE 390 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHH
Confidence 45679999999999999876
No 473
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=70.79 E-value=1.5 Score=51.62 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
+.|..+.+.|+||+|||||..
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~ 1077 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQ 1077 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 458899999999999999766
No 474
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=70.76 E-value=1.3 Score=50.03 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=16.9
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
-+.++|+|++|||||+|+.
T Consensus 238 p~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999999876
No 475
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=70.47 E-value=1.3 Score=40.94 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.+++.|++|+|||||..
T Consensus 39 kVvlvG~~~vGKSSLl~ 55 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLAN 55 (211)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999999876
No 476
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=70.10 E-value=1.5 Score=45.17 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=18.8
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|.+|+|||||+.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l 221 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFAL 221 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 568899999999999999876
No 477
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=70.07 E-value=1.5 Score=50.15 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=17.9
Q ss_pred CCCCEEEEEeCCCCCccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLS 351 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs 351 (490)
..|..+++.|+||+|||||.
T Consensus 608 ~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 608 PLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp ESSSEEEEECSTTSSHHHHH
T ss_pred cCCcEEEEEccCCCChhhhH
Confidence 45889999999999999985
No 478
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=69.78 E-value=1.6 Score=49.01 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=18.3
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|+.+++.|++|+|||||..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr 625 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMR 625 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHH
Confidence 467899999999999999655
No 479
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=69.78 E-value=1.6 Score=41.59 Aligned_cols=17 Identities=47% Similarity=0.546 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 3 kI~lvG~~n~GKSTL~n 19 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFN 19 (256)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999876
No 480
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=69.63 E-value=1.4 Score=45.34 Aligned_cols=17 Identities=29% Similarity=0.698 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|+||||++.
T Consensus 26 ~i~l~G~~G~GKTTl~~ 42 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAE 42 (359)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 48999999999999874
No 481
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=69.41 E-value=0.99 Score=52.03 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=18.4
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.+.|++|+|||||..
T Consensus 697 ~~GeivaIiGpNGSGKSTLLk 717 (986)
T 2iw3_A 697 SLSSRIAVIGPNGAGKSTLIN 717 (986)
T ss_dssp ETTCEEEECSCCCHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 357889999999999999766
No 482
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=69.41 E-value=1.4 Score=48.41 Aligned_cols=17 Identities=41% Similarity=0.745 Sum_probs=15.7
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|++|||||+|+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999999876
No 483
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=69.41 E-value=1 Score=44.20 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=16.0
Q ss_pred CCEEEE--EeCCCCCcccccc
Q 011235 334 GDVALF--FGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lf--fGlSGtGKTTLs~ 352 (490)
+..+++ .|++|+|||||+.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHH
Confidence 446778 9999999999876
No 484
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=69.25 E-value=1.6 Score=42.33 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|.+|+|||||..
T Consensus 5 kI~lvG~~nvGKSTL~n 21 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFN 21 (272)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999766
No 485
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=69.04 E-value=1.7 Score=41.76 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|+|.+|+|||||..
T Consensus 5 ~I~lvG~~n~GKSTLin 21 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFN 21 (274)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999876
No 486
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=68.71 E-value=1 Score=48.69 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=14.6
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
+++.|+||+|||||..
T Consensus 48 iaIvG~nGsGKSTLL~ 63 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLE 63 (608)
T ss_dssp EECCCCTTSCHHHHHH
T ss_pred EEEECCCCChHHHHHH
Confidence 8999999999999755
No 487
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=68.69 E-value=1.5 Score=43.94 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=16.1
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
+..++++|.||+|||||..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHH
Confidence 4458999999999999766
No 488
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=68.68 E-value=1.3 Score=42.62 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=14.7
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|++||||||++.
T Consensus 49 ~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp SEEEECSSTTSSHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHH
Confidence 356777889999999876
No 489
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=68.62 E-value=1.7 Score=47.71 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=15.9
Q ss_pred CEEEEEeCCCCCcccccc
Q 011235 335 DVALFFGLSGTGKTTLST 352 (490)
Q Consensus 335 ~~~lffGlSGtGKTTLs~ 352 (490)
..++|.|++|||||+++.
T Consensus 202 ~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CEEEEESCTTTTTHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 458999999999999876
No 490
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=68.50 E-value=2 Score=44.33 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=17.9
Q ss_pred CCCCEEEEEeCCCCCcccccc
Q 011235 332 KDGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 332 ~~g~~~lffGlSGtGKTTLs~ 352 (490)
..|..+.|.|++|+|||||-.
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n 38 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFR 38 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 347789999999999999755
No 491
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=68.39 E-value=0.5 Score=45.12 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=14.0
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|+||||||||..
T Consensus 29 ~~~i~GpnGsGKSTll~ 45 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMA 45 (227)
T ss_dssp HHHHHSCCSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45788999999999654
No 492
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=68.20 E-value=1.6 Score=40.59 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=14.6
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
+++.|.+|+||||++.
T Consensus 2 ilV~Gg~~SGKS~~A~ 17 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE 17 (180)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEECCCCCcHHHHHH
Confidence 6899999999999876
No 493
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=68.12 E-value=1.6 Score=41.65 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=16.9
Q ss_pred CCCEEEEEeCCCCCcccccc
Q 011235 333 DGDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 333 ~g~~~lffGlSGtGKTTLs~ 352 (490)
.|..+++.|+.|+||||++.
T Consensus 11 ~G~i~litG~mGsGKTT~ll 30 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELI 30 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHH
Confidence 46679999999999999655
No 494
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=67.96 E-value=1.6 Score=44.37 Aligned_cols=17 Identities=41% Similarity=0.632 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
..+|+|++|+|||||..
T Consensus 28 ~~~i~G~nG~GKttll~ 44 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLE 44 (359)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCChhHHHH
Confidence 89999999999999544
No 495
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=67.92 E-value=1.7 Score=48.54 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=17.3
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
|..+++.|++|+|||||..
T Consensus 576 g~i~~I~GpNGsGKSTlLr 594 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLR 594 (765)
T ss_dssp SCEEEEESCSSSSHHHHHH
T ss_pred CcEEEEECCCCCChHHHHH
Confidence 8899999999999999654
No 496
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=67.66 E-value=1.6 Score=40.24 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=13.8
Q ss_pred EEEEeCCCCCcccccc
Q 011235 337 ALFFGLSGTGKTTLST 352 (490)
Q Consensus 337 ~lffGlSGtGKTTLs~ 352 (490)
++|-|..||||||++.
T Consensus 3 I~~EG~DGsGKsTq~~ 18 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5788999999999655
No 497
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=67.48 E-value=1.6 Score=40.64 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=14.6
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
=++|-|+.||||||++.
T Consensus 4 FI~~EG~dGsGKsTq~~ 20 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVIN 20 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 37889999999999665
No 498
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=67.40 E-value=1.4 Score=44.45 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++++|.+|+|||||..
T Consensus 39 ~I~vvG~~g~GKSTLln 55 (361)
T 2qag_A 39 TLMVVGESGLGKSTLIN 55 (361)
T ss_dssp CEEECCCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 37999999999999766
No 499
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=67.33 E-value=1.6 Score=45.45 Aligned_cols=19 Identities=47% Similarity=0.588 Sum_probs=16.7
Q ss_pred CCEEEEEeCCCCCcccccc
Q 011235 334 GDVALFFGLSGTGKTTLST 352 (490)
Q Consensus 334 g~~~lffGlSGtGKTTLs~ 352 (490)
..+++|.|+.|+||||+++
T Consensus 100 ~~vI~ivG~~GvGKTT~a~ 118 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVG 118 (433)
T ss_dssp SEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4679999999999999777
No 500
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=67.28 E-value=1.7 Score=40.49 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=15.6
Q ss_pred EEEEEeCCCCCcccccc
Q 011235 336 VALFFGLSGTGKTTLST 352 (490)
Q Consensus 336 ~~lffGlSGtGKTTLs~ 352 (490)
.++|.|++|+|||+|..
T Consensus 15 KivlvGd~~VGKTsLi~ 31 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLIT 31 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCcCHHHHHH
Confidence 59999999999999876
Done!