BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011236
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EK1|A Chain A, Crystal Structure Of Electron-Spin Labeled Cytochrome
P450cam
pdb|4EK1|B Chain B, Crystal Structure Of Electron-Spin Labeled Cytochrome
P450cam
Length = 414
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 20/103 (19%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEMES----------QSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ S Q + + D+ + +
Sbjct: 105 PPEQRQFRALANQVVGMPVVDKLENRIQELASSLIESLRPQGQCNFTEDYAEPFPIRIFM 164
Query: 254 IIAGLKEKAIIYLKKCEDIVSK---------SKDALGYNHLIS 287
++AGL E+ I +LK D +++ +K+AL Y++LI
Sbjct: 165 LLAGLPEEDIPHLKYLTDQMTRPDGCMTFAEAKEAL-YDYLIP 206
>pdb|3FWI|A Chain A, Ferric Camphor Bound Cytochrome P450cam Containing A
Selenocysteine As The 5th Heme Ligand, Tetragonal
Crystal Form
pdb|3FWJ|A Chain A, Ferric Camphor Bound Cytochrome P450cam Containing A
Selenocysteine As The 5th Heme Ligand, Orthorombic
Crystal Form
Length = 405
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 96 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 155
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 156 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 184
>pdb|3FWF|A Chain A, Ferric Camphor Bound Cytochrome P450cam Containing A
Selenocysteine As The 5th Heme Ligand, Monoclinic
Crystal Form
pdb|3FWF|B Chain B, Ferric Camphor Bound Cytochrome P450cam Containing A
Selenocysteine As The 5th Heme Ligand, Monoclinic
Crystal Form
Length = 405
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 96 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 155
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 156 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 184
>pdb|2GQX|A Chain A, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FL244AV247LC334A) WITH PENTACHLOROBENZENE
pdb|2GQX|B Chain B, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FL244AV247LC334A) WITH PENTACHLOROBENZENE
pdb|2GR6|A Chain A, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FL244AV247LC334A)
pdb|2GR6|B Chain B, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FL244AV247LC334A)
Length = 405
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 96 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 155
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 156 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 184
>pdb|3FWG|A Chain A, Ferric Camphor Bound Cytochrome P450cam, Arg365leu,
Glu366gln, Monoclinic Crystal Form
pdb|3FWG|B Chain B, Ferric Camphor Bound Cytochrome P450cam, Arg365leu,
Glu366gln, Monoclinic Crystal Form
Length = 405
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 96 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 155
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 156 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 184
>pdb|2LQD|A Chain A, Reduced And Co-Bound Cytochrome P450cam (Cyp101a1)
Length = 405
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 96 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 155
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 156 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 184
>pdb|2FER|A Chain A, P450cam From Pseudomonas Putida Reconstituted With
Manganic Protoporphyrin Ix
pdb|2FEU|A Chain A, P450cam From Pseudomonas Putida Reconstituted With
Manganic Protoporphyrin Ix
pdb|2FEU|B Chain B, P450cam From Pseudomonas Putida Reconstituted With
Manganic Protoporphyrin Ix
Length = 411
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 96 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 155
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 156 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 184
>pdb|1LWL|A Chain A, Crystal Structure Of Cytochrome P450-Cam With A
Fluorescent Probe D-8-Ad (Adamantane-1-Carboxylic
Acid-5-Dimethylamino-
Naphthalene-1-Sulfonylamino-Octyl-Amide)
pdb|1RF9|A Chain A, Crystal Structure Of Cytochrome P450-Cam With A
Fluorescent Probe D-4-Ad (Adamantane-1-Carboxylic
Acid-5-Dimethylamino-
Naphthalene-1-Sulfonylamino-Butyl-Amide)
Length = 417
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 106 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 165
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 166 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 194
>pdb|1C8J|A Chain A, Crystal Structure Of Cytochrome P450cam Mutant (F87wY96F)
pdb|1C8J|B Chain B, Crystal Structure Of Cytochrome P450cam Mutant (F87wY96F)
Length = 414
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 105 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 164
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 165 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 193
>pdb|2A1M|A Chain A, Crystal Structure Of Ferrous Dioxygen Complex Of Wild-Type
Cytochrome P450cam
pdb|2A1M|B Chain B, Crystal Structure Of Ferrous Dioxygen Complex Of Wild-Type
Cytochrome P450cam
Length = 415
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 106 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 165
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 166 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 194
>pdb|2A1O|A Chain A, Crystal Structure Of Ferrous Dioxygen Complex Of T252a
Cytochrome P450cam
pdb|2A1O|B Chain B, Crystal Structure Of Ferrous Dioxygen Complex Of T252a
Cytochrome P450cam
Length = 415
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 106 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 165
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 166 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 194
>pdb|1T85|A Chain A, Crystal Structure Of The Ferrous Co-Bound Cytochrome
P450cam Mutant (L358pC334A)
pdb|1T86|A Chain A, Crystal Structure Of The Ferrous Cytochrome P450cam Mutant
(L358pC334A)
pdb|1T86|B Chain B, Crystal Structure Of The Ferrous Cytochrome P450cam Mutant
(L358pC334A)
Length = 414
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 105 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 164
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 165 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 193
>pdb|2CP4|A Chain A, Crystal Structure Of The Cytochrome P450-Cam Active Site
Mutant Thr252ala
Length = 414
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 105 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 164
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 165 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 193
>pdb|2ZUJ|A Chain A, Crystal Structure Of Camphor-Soaked Ferric Cytochrome
P450cam Mutant(D297l)
Length = 415
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 106 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 165
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 166 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 194
>pdb|2QBL|A Chain A, Crystal Structure Of Ferric G248t Cytochrome P450cam
pdb|2QBM|A Chain A, Crystal Structure Of The P450cam G248t Mutant In The
Cyanide Bound State
Length = 421
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 106 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 165
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 166 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 194
>pdb|1QMQ|A Chain A, Optical Detection Of Cytochrome P450 By Sensitizer-Linked
Substrates
pdb|1GJM|A Chain A, Covalent Attachment Of An Electroactive Sulphydryl Reagent
In The Active Site Of Cytochrome P450cam
pdb|1K2O|A Chain A, Cytochrome P450cam With Bound
Bis(2,2'-Bipyridine)-(5-Methyl-2-2'-
Bipyridine)-C2-Adamantane Ruthenium (Ii)
pdb|1K2O|B Chain B, Cytochrome P450cam With Bound
Bis(2,2'-Bipyridine)-(5-Methyl-2-2'-
Bipyridine)-C2-Adamantane Ruthenium (Ii)
pdb|1T87|A Chain A, Crystal Structure Of The Ferrous Co-Bound Cytochrome
P450cam (C334a)
pdb|1T87|B Chain B, Crystal Structure Of The Ferrous Co-Bound Cytochrome
P450cam (C334a)
pdb|1T88|A Chain A, Crystal Structure Of The Ferrous Cytochrome P450cam
(C334a)
pdb|1T88|B Chain B, Crystal Structure Of The Ferrous Cytochrome P450cam
(C334a)
pdb|3L61|A Chain A, Crystal Structure Of Substrate-Free P450cam At 200 Mm [k+]
pdb|3L62|A Chain A, Crystal Structure Of Substrate-Free P450cam At Low [k+]
pdb|3L63|A Chain A, Crystal Structure Of Camphor-Bound P450cam At Low [k+]
pdb|3OIA|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac1-C8gluetg-Bio
pdb|3OL5|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized With
A Tethered Substrate Analog 3oh-Adac1-C8-Dans
pdb|3P6M|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac1-C8-Dans
pdb|3P6N|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac1-C8-Dans
pdb|3P6O|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac1-Etg-Dans
pdb|3P6P|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog Adac1-C6-Bio
pdb|3P6Q|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac2-Etg-Boc
pdb|3P6R|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
3oh-Adac1-Etg-Boc
pdb|3P6S|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac2-C8-Dans
pdb|3P6T|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac2-C8-Dans
pdb|3P6U|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac3-C6-Dans
pdb|3P6V|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
3et-Adac1-Etg-Boc
pdb|3P6W|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac3-Etg-Boc
pdb|3P6X|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac3-C8-Dans
pdb|4G3R|A Chain A, Crystal Structure Of Nitrosyl Cytochrome P450cam
pdb|4G3R|B Chain B, Crystal Structure Of Nitrosyl Cytochrome P450cam
Length = 414
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 105 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 164
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 165 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 193
>pdb|2A1N|A Chain A, Crystal Structure Of Ferrous Dioxygen Complex Of D251n
Cytochrome P450cam
pdb|2A1N|B Chain B, Crystal Structure Of Ferrous Dioxygen Complex Of D251n
Cytochrome P450cam
Length = 415
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 106 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 165
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 166 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 194
>pdb|2FE6|A Chain A, P450cam From Pseudomonas Putida Reconstituted With
Manganic Protoporphyrin Ix
Length = 421
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 106 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 165
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 166 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 194
>pdb|1GEK|A Chain A, Structural Characterization Of N-Butyl-Isocyanide
Complexes Of Cytochromes P450nor And P450cam
pdb|1GEM|A Chain A, Structural Characterization Of N-Butyl-Isocyanide
Complexes Of Cytochromes P450nor And P450cam
pdb|1IWI|A Chain A, Putidaredoxin-Binding Stablilizes An Active Conformer Of
Cytochrome P450cam In Its Reduced State; Crystal
Structure Of Cytochrome P450cam
pdb|2ZAW|A Chain A, Crystal Structure Of Ferric Cytochrome P450cam
Reconstituted With 6- Methyl-6-Depropionated Hemin
pdb|2ZAX|A Chain A, Crystal Structure Of Ferric Cytochrome P450cam
pdb|2Z97|A Chain A, Crystal Structure Of Ferric Cytochrome P450cam
Reconstituted With 7- Methyl-7-Depropionated Hemin
pdb|2ZWT|A Chain A, Crystal Structure Of Ferric Cytochrome P450cam
pdb|2ZWU|A Chain A, Crystal Structure Of Camphor Soaked Ferric Cytochrome
P450cam
pdb|2L8M|A Chain A, Reduced And Co-Bound Cytochrome P450cam (Cyp101a1)
Length = 415
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 106 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 165
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 166 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 194
>pdb|1P2Y|A Chain A, Crystal Structure Of Cytochrome P450cam In Complex With
(S)- (-)-Nicotine
pdb|1P7R|A Chain A, Crystal Structure Of Reduced, Co-Exposed Complex Of
Cytochrome P450cam With (S)-(-)-Nicotine
Length = 420
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 105 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 164
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 165 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 193
>pdb|2QBN|A Chain A, Crystal Structure Of Ferric G248v Cytochrome P450cam
pdb|2QBO|A Chain A, Crystal Structure Of The P450cam G248v Mutant In The
Cyanide Bound State
Length = 421
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 106 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 165
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 166 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 194
>pdb|2H7R|A Chain A, L244a Mutant Of Cytochrome P450cam Complexed With
Imidazole
pdb|2H7S|A Chain A, L244a Mutant Of Cytochrome P450cam
pdb|2H7S|C Chain C, L244a Mutant Of Cytochrome P450cam
Length = 414
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 105 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 164
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 165 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 193
>pdb|1RE9|A Chain A, Crystal Structure Of Cytochrome P450-cam With A
Fluorescent Probe D-8-ad (adamantane-1-carboxylic
Acid-5-dimethylamino-
Naphthalene-1-sulfonylamino-octyl-amide)
pdb|1YRC|A Chain A, X-ray Crystal Structure Of Hydrogenated Cytochrome P450cam
pdb|1YRD|A Chain A, X-Ray Crystal Structure Of Perdeuterated Cytochrome
P450cam
pdb|2H7Q|A Chain A, Cytochrome P450cam Complexed With Imidazole
pdb|1CP4|A Chain A, Formation, Crystal Structure, And Rearrangement Of A
Cytochrome P450-Cam Iron-Phenyl Complex
pdb|1NOO|A Chain A, Cytochrome P450-Cam Complexed With 5-Exo-Hydroxycamphor
pdb|1PHA|A Chain A, Inhibitor-Induced Conformational Change In Cytochrome
P450- Cam
pdb|1PHB|A Chain A, Inhibitor-Induced Conformational Change In Cytochrome
P450- Cam
pdb|1PHC|A Chain A, Crystal Structure Of Substrate-free Pseudomonas Putida
Cytochrome P450
pdb|1PHD|A Chain A, Crystal Structures Of Metyrapone-And
Phenylimidazole-Inhibited Complexes Of Cytochrome
P450-Cam
pdb|1PHE|A Chain A, Crystal Structures Of Metyrapone-And
Phenylimidazole-Inhibited Complexes Of Cytochrome
P450-Cam
pdb|1PHF|A Chain A, Crystal Structures Of Metyrapone-And Phenylimidazole-
Inhibited Complexes Of Cytochrome P450-Cam
pdb|1PHG|A Chain A, Crystal Structures Of Metyrapone-And Phenylimidazole-
Inhibited Complexes Of Cytochrome P450-Cam
pdb|2CPP|A Chain A, High-Resolution Crystal Structure Of Cytochrome P450-Cam
pdb|3CP4|A Chain A, Crystal Structure Of The Cytochrome P450-Cam Active Site
Mutant Thr252ala
pdb|3CPP|A Chain A, Crystal Structure Of The Carbon
Monoxy-Substrate-Cytochrome P450-Cam Ternary Complex
pdb|4CP4|A Chain A, Crystal Structure Of The Cytochrome P450-Cam Active Site
Mutant Thr252ala
pdb|4CPP|A Chain A, Crystal Structures Of Cytochrome P450-Cam Complexed With
Camphane, Thiocamphor, And Adamantane: Factors
Controlling P450 Substrate Hydroxylation
pdb|5CP4|A Chain A, Cryogenic Structure Of P450cam
pdb|5CPP|A Chain A, The Structural Basis For Substrate-Induced Changes In
Redox Potential And Spin Equilibrium In Cytochrome
P-450(Cam)
pdb|6CPP|A Chain A, Crystal Structures Of Cytochrome P450-Cam Complexed With
Camphane, Thiocamphor, And Adamantane: Factors
Controlling P450 Substrate Hydroxylation
pdb|7CPP|A Chain A, The Structural Basis For Substrate-Induced Changes In
Redox Potential And Spin Equilibrium In Cytochrome
P450(Cam)
pdb|8CPP|A Chain A, Crystal Structures Of Cytochrome P450-Cam Complexed With
Camphane, Thiocamphor, And Adamantane: Factors
Controlling P450 Substrate Hydroxylation
Length = 414
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 105 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 164
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 165 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 193
>pdb|2ZUH|A Chain A, Crystal Structure Of Camphor-Soaked Ferric Cytochrome
P450cam Mutant (D297a)
Length = 415
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 106 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 165
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 166 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 194
>pdb|1J51|A Chain A, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FV247LC334A) WITH 1,3,5-Trichlorobenzene
pdb|1J51|B Chain B, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FV247LC334A) WITH 1,3,5-Trichlorobenzene
pdb|1J51|C Chain C, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FV247LC334A) WITH 1,3,5-Trichlorobenzene
pdb|1J51|D Chain D, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FV247LC334A) WITH 1,3,5-Trichlorobenzene
pdb|1MPW|A Chain A, Molecular Recognition In (+)-a-pinene Oxidation By
Cytochrome P450cam
pdb|1MPW|B Chain B, Molecular Recognition In (+)-a-pinene Oxidation By
Cytochrome P450cam
pdb|2FRZ|A Chain A, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FV247LC334A)
pdb|2FRZ|B Chain B, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FV247LC334A)
Length = 414
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 105 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 164
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 165 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 193
>pdb|1DZ8|A Chain A, Oxygen Complex Of P450cam From Pseudomonas Putida
pdb|1DZ8|B Chain B, Oxygen Complex Of P450cam From Pseudomonas Putida
pdb|1DZ6|A Chain A, Ferrous P450cam From Pseudomonas Putida
pdb|1DZ6|B Chain B, Ferrous P450cam From Pseudomonas Putida
pdb|1DZ9|A Chain A, Putative Oxo Complex Of P450cam From Pseudomonas Putida
pdb|1DZ9|B Chain B, Putative Oxo Complex Of P450cam From Pseudomonas Putida
pdb|1DZ4|A Chain A, Ferric P450cam From Pseudomonas Putida
pdb|1DZ4|B Chain B, Ferric P450cam From Pseudomonas Putida
pdb|1O76|A Chain A, Cyanide Complex Of P450cam From Pseudomonas Putida
pdb|1O76|B Chain B, Cyanide Complex Of P450cam From Pseudomonas Putida
pdb|1UYU|A Chain A, Xenon Complex Of Wildtype P450cam From Pseudomonas Putida
pdb|1UYU|B Chain B, Xenon Complex Of Wildtype P450cam From Pseudomonas Putida
pdb|1AKD|A Chain A, Cytochrome P450cam From Pseudomonas Putida, Complexed With
1s-Camphor
Length = 414
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 105 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 164
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 165 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 193
>pdb|1GEB|A Chain A, X-Ray Crystal Structure And Catalytic Properties Of
Thr252ile Mutant Of Cytochrome P450cam
Length = 415
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 106 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 165
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 166 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 194
>pdb|6CP4|A Chain A, P450cam D251n Mutant
Length = 414
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 105 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 164
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 165 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 193
>pdb|2ZUI|A Chain A, Crystal Structure Of Camphor-Soaked Ferric Cytochrome
P450cam Mutant (D297n)
Length = 415
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 106 PPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 165
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 166 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 194
>pdb|1IWJ|A Chain A, Putidaredoxin-Binding Stablilizes An Active Conformer Of
Cytochrome P450cam In Its Reduced State; Crystal
Structure Of Mutant(109k) Cytochrome P450cam
Length = 415
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ +R N + +EN +QE+ + Q + + D+ + +
Sbjct: 106 PPEQKQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 165
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 166 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 194
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 382 PTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEE 416
PTPNS+ +A ADK N ++ F+ ++A+ ++ E
Sbjct: 270 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE 304
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 382 PTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEE 416
PTPNS+ +A ADK N ++ F+ ++A+ ++ E
Sbjct: 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE 308
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 175 YNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSE-LSSMENVLQEM 233
YN +M + G +++ VL +K+ G+ PD SY + G + + ++E L++M
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM 227
Query: 234 ESQ 236
+
Sbjct: 228 SQE 230
>pdb|2PP3|A Chain A, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
MUTANT K197A Liganded With Mg And L-Glucarate
pdb|2PP3|B Chain B, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
MUTANT K197A Liganded With Mg And L-Glucarate
pdb|2PP3|C Chain C, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
MUTANT K197A Liganded With Mg And L-Glucarate
Length = 398
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 34/167 (20%)
Query: 54 TPVLDQWVLEGQKISELELQRVIRQLRSRKRFKH-ALQVSEWMSGQGLAFSVHDHAVQLD 112
TPV D VL G++ E+ +I ++RSR F+ S+ GQG+ H + +
Sbjct: 42 TPVSDAKVLTGRQKPLTEVAIIIAEIRSRDGFEGVGFSYSKRAGGQGI--YAHAKEIADN 99
Query: 113 LIGKVRGLESAETYFNSLNDEDKVDKLYGALL---NCYVREGLVDESLSLMQ------KM 163
L+G+ D + +DK+Y LL R G+ +++S + K
Sbjct: 100 LLGE---------------DPNDIDKIYTKLLWAGASVGRSGMAVQAISPIDIALWDMKA 144
Query: 164 KEMGSFGSAL---NYNGIMCLYTNTG-QHEKIPDVLLDM---KENGV 203
K G + L + + + C T+ G H + VL ++ +ENG+
Sbjct: 145 KRAGLPLAKLLGAHRDSVQCYNTSGGFLHTPLDQVLKNVVISRENGI 191
>pdb|2PP0|A Chain A, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
FROM Salmonella Typhimurium Lt2
pdb|2PP0|B Chain B, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
FROM Salmonella Typhimurium Lt2
pdb|2PP0|C Chain C, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
FROM Salmonella Typhimurium Lt2
pdb|2PP1|A Chain A, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|B Chain B, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|C Chain C, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|D Chain D, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|E Chain E, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|F Chain F, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
Length = 398
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 34/167 (20%)
Query: 54 TPVLDQWVLEGQKISELELQRVIRQLRSRKRFKH-ALQVSEWMSGQGLAFSVHDHAVQLD 112
TPV D VL G++ E+ +I ++RSR F+ S+ GQG+ H + +
Sbjct: 42 TPVSDAKVLTGRQKPLTEVAIIIAEIRSRDGFEGVGFSYSKRAGGQGI--YAHAKEIADN 99
Query: 113 LIGKVRGLESAETYFNSLNDEDKVDKLYGALL---NCYVREGLVDESLSLMQ------KM 163
L+G+ D + +DK+Y LL R G+ +++S + K
Sbjct: 100 LLGE---------------DPNDIDKIYTKLLWAGASVGRSGMAVQAISPIDIALWDMKA 144
Query: 164 KEMGSFGSAL---NYNGIMCLYTNTG-QHEKIPDVLLDM---KENGV 203
K G + L + + + C T+ G H + VL ++ +ENG+
Sbjct: 145 KRAGLPLAKLLGAHRDSVQCYNTSGGFLHTPLDQVLKNVVISRENGI 191
>pdb|1IWK|A Chain A, Putidaredoxin-Binding Stablilizes An Active Conformer Of
Cytochrome P450cam In Its Reduced State; Crystal
Structure Of Mutant(112k) Cytochrome P450cam
Length = 415
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/89 (19%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEM----------ESQSHISMDWGTYSTVANYY 253
PP+ ++ N + +EN +QE+ + Q + + D+ + +
Sbjct: 106 PPEQRQFKALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFM 165
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGY 282
++AGL E+ I +LK D +++ ++ +
Sbjct: 166 LLAGLPEEDIPHLKYLTDQMTRPDGSMTF 194
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 233 MESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASL 292
+ES DW Y T AN AGLK II KC V + L S +S
Sbjct: 47 VESAGDNQFDWSYYKTYANAVKEAGLKWVPIISTHKCGGNVGDDCNI----PLPSWLSSK 102
Query: 293 GNKDEM 298
G+ DEM
Sbjct: 103 GSADEM 108
>pdb|4A3T|A Chain A, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3
pdb|4A3T|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3
Length = 485
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 12/81 (14%)
Query: 233 MESQSHISM-DWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYA- 290
ME+ S + + D+ T + I+G + K II+ E+I+ +D L + L+++Y
Sbjct: 193 METVSFVRLIDFLT----IEFQFISGPEFKDIIFCFTKEEILKSVEDILVFIELVNYYTK 248
Query: 291 ---SLGNKDEMMKFWGLQKIK 308
+ N+D K+W L+ +K
Sbjct: 249 FLLEIRNQD---KYWALRHVK 266
>pdb|3VLE|A Chain A, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLE|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 500
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 12/81 (14%)
Query: 233 MESQSHISM-DWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYA- 290
ME+ S + + D+ T + I+G + K II+ E+I+ +D L + L+++Y
Sbjct: 208 METVSFVRLIDFLT----IEFQFISGPEFKDIIFCFTKEEILKSVEDILVFIELVNYYTK 263
Query: 291 ---SLGNKDEMMKFWGLQKIK 308
+ N+D K+W L+ +K
Sbjct: 264 FLLEIRNQD---KYWALRHVK 281
>pdb|4A3V|A Chain A, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|C Chain C, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 496
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 12/81 (14%)
Query: 233 MESQSHISM-DWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYA- 290
ME+ S + + D+ T + I+G + K II+ E+I+ +D L + L+++Y
Sbjct: 193 METVSFVRLIDFLT----IEFQFISGPEFKDIIFCFTKEEILKSVEDILVFIELVNYYTK 248
Query: 291 ---SLGNKDEMMKFWGLQKIK 308
+ N+D K+W L+ +K
Sbjct: 249 FLLEIRNQD---KYWALRHVK 266
>pdb|3VLD|A Chain A, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLD|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|A Chain A, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|C Chain C, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 500
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 252 YYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYA----SLGNKDEMMKFWGLQKI 307
+ I+G + K II+ E+I+ +D L + L+++Y + N+D K+W L+ +
Sbjct: 224 FQFISGPEFKDIIFCFTKEEILKSVEDILVFIELVNYYTKFLLEIRNQD---KYWALRHV 280
Query: 308 K 308
K
Sbjct: 281 K 281
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,152,704
Number of Sequences: 62578
Number of extensions: 579196
Number of successful extensions: 1557
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1517
Number of HSP's gapped (non-prelim): 53
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)