BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011236
(490 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705,
mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2
SV=1
Length = 492
Score = 476 bits (1225), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/467 (51%), Positives = 326/467 (69%), Gaps = 6/467 (1%)
Query: 28 YRAVKPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKH 87
Y V + LYS+ISPLGDP S+ P L WV G+K+S EL R++ LR RKRF H
Sbjct: 16 YYYTNRVKKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLH 75
Query: 88 ALQVSEWMSGQGLA-FSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNC 146
AL+VS+WM+ G+ FS +HAV LDLIG+V G +AE YF +L ++ K DK YGALLNC
Sbjct: 76 ALEVSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNC 135
Query: 147 YVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPD 206
YVR+ V++SL +KMKEMG S+L YN IMCLYTN GQHEK+P VL +MKE V PD
Sbjct: 136 YVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPD 195
Query: 207 NFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYL 266
N+SYRICIN++GA +L + L++ME + I+MDW TY+ A +YI G ++A+ L
Sbjct: 196 NYSYRICINAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELL 255
Query: 267 KKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVK 326
K E+ + K KD GYNHLI+ YA LG K E+++ W L+K CK+++N+DY+T+L SLVK
Sbjct: 256 KMSENRLEK-KDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVK 314
Query: 327 IGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNS 386
I L EAE++L EW+ S CYDFRVPN ++ GY K M EKA+A+L+++ ++GK TP S
Sbjct: 315 IDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPES 374
Query: 387 WSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAF 446
W ++A YA+K +E AF+CMK AL V ++ WRP +LV+S+L W+GD ++EVE+F
Sbjct: 375 WELVATAYAEKGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESF 434
Query: 447 VSSLK--IKVQKRNMYHALTEAHIR-SGQEVDGLLESMKADDIDEDK 490
V+SL+ I V K+ MYHAL +A IR G+ +D LL+ MK D I+ D+
Sbjct: 435 VASLRNCIGVNKQ-MYHALVKADIREGGRNIDTLLQRMKDDKIEIDE 480
>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710,
mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2
SV=1
Length = 490
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 151/406 (37%), Positives = 239/406 (58%), Gaps = 4/406 (0%)
Query: 37 NNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMS 96
+ L R++ GDP S+ VLD W+ +G + EL +I+ LR RF HALQ+S+WMS
Sbjct: 38 DTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMS 97
Query: 97 GQGL-AFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDE 155
+ S D A++LDLI KV GL AE +F ++ E + LYGALLNCY + ++ +
Sbjct: 98 EHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHK 157
Query: 156 SLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICIN 215
+ + Q+MKE+G L YN ++ LY TG++ + +L +M++ V PD F+ ++
Sbjct: 158 AEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLH 217
Query: 216 SYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSK 275
+Y S++ ME L E+ + +DW TY+ AN YI AGL EKA+ L+K E +V+
Sbjct: 218 AYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNA 277
Query: 276 SKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEK 335
K Y L+S Y + G K+E+ + W L K + N YI+++ +L+K+ ++EE EK
Sbjct: 278 QKRKHAYEVLMSFYGAAGKKEEVYRLWSLYK-ELDGFYNTGYISVISALLKMDDIEEVEK 336
Query: 336 MLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYA 395
++EEWE +D R+P++++ GY +KGM+EKA+ V+ +V+K + ++W +A GY
Sbjct: 337 IMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYK 396
Query: 396 DKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVE 441
MEKA E K A+ V + WRP ++ S +D+L RD+E
Sbjct: 397 MAGKMEKAVEKWKRAIEVSKPG--WRPHQVVLMSCVDYLEGQRDME 440
>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770
OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1
Length = 491
Score = 265 bits (677), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 258/462 (55%), Gaps = 4/462 (0%)
Query: 29 RAVKPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHA 88
R+ K LY+R+ G +V + L+Q++ + + + E+ I++LR+R + A
Sbjct: 15 RSTKKYIEEPLYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPA 74
Query: 89 LQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYV 148
L++SE M +G+ +V D A+ LDL+ K R + + E YF L + K + YG+LLNCY
Sbjct: 75 LKLSEVMEERGMNKTVSDQAIHLDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYC 134
Query: 149 REGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNF 208
+E L +++ L+ KMKE+ S+++YN +M LYT TG+ EK+P ++ ++K V PD++
Sbjct: 135 KELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSY 194
Query: 209 SYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKK 268
+Y + + + A +++S +E V++EM ++ DW TYS +A+ Y+ AGL +KA L++
Sbjct: 195 TYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQE 254
Query: 269 CEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIG 328
E + + +D Y LI+ Y LG E+ + W ++ K N Y+ M+ LVK+
Sbjct: 255 LE-MKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLN 313
Query: 329 ELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWS 388
+L AE + +EW+ +C YD R+ N+++ Y+Q+G+I+KA+ + ++ ++G +W
Sbjct: 314 DLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWE 373
Query: 389 IIAAGYADKNNMEKAFECMKEALAVHE-ENKFWRPKPSLVSSILDWLGDNRDVEEVEAFV 447
I Y +M +A ECM +A+++ + + W P P V +++ + +DV E +
Sbjct: 374 IFMDYYVKSGDMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLL 433
Query: 448 SSLKIKVQK--RNMYHALTEAHIRSGQEVDGLLESMKADDID 487
LK ++ L + +G+ + +K ++++
Sbjct: 434 EILKNGTDNIGAEIFEPLIRTYAAAGKSHPAMRRRLKMENVE 475
>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150
OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2
Length = 524
Score = 265 bits (676), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 147/423 (34%), Positives = 247/423 (58%), Gaps = 5/423 (1%)
Query: 32 KPVAR-NNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQ 90
+P+ + N +Y +IS + P++ VL+QW G+K+++ EL RV+++LR KR AL+
Sbjct: 61 RPIVQWNAIYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALE 120
Query: 91 VSEWMSGQGLAF--SVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYV 148
V +WM+ +G F S D A+QLDLIGKVRG+ AE +F L + K ++YG+LLN YV
Sbjct: 121 VYDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYV 180
Query: 149 REGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNF 208
R +++ +L+ M++ G L +N +M LY N +++K+ ++ +MK+ + D +
Sbjct: 181 RAKSREKAEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIY 240
Query: 209 SYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKK 268
SY I ++S G+ + ME V Q+M+S I +W T+ST+A YI G EKA L+K
Sbjct: 241 SYNIWLSSCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRK 300
Query: 269 CEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIG 328
E ++ ++ + Y++L+S Y SLGNK E+ + W + K N Y ++ SLV++G
Sbjct: 301 VEARIT-GRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMG 359
Query: 329 ELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWS 388
++E AEK+ EEW YD R+PN+++ Y + +E A+ + +V+ G P+ ++W
Sbjct: 360 DIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWE 419
Query: 389 IIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVS 448
I+A G+ K + +A C++ A + E + WRPK ++S + DV EA +
Sbjct: 420 ILAVGHTRKRCISEALTCLRNAFSA-EGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLE 478
Query: 449 SLK 451
L+
Sbjct: 479 LLR 481
>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460
OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1
Length = 491
Score = 257 bits (657), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 156/459 (33%), Positives = 253/459 (55%), Gaps = 8/459 (1%)
Query: 34 VARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSE 93
VA N I P S+T +L + + G +S EL+ + ++L R+ ALQ+ E
Sbjct: 35 VANRNSLKEILRKNGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMME 94
Query: 94 WMSGQ-GLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED---KVDK-LYGALLNCYV 148
WM Q + FSV+D A++LDLI K GL+ E YF L +V K Y LL YV
Sbjct: 95 WMENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYV 154
Query: 149 REGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNF 208
+ +V E+ +LM+K+ +G + +N +M LY +GQ+EK+ V+ MK N +P +
Sbjct: 155 KNKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVL 214
Query: 209 SYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKK 268
SY + +N+ S ++++E V +EM + + W + T+AN YI +G EKA + L+
Sbjct: 215 SYNLWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLED 274
Query: 269 CEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIG 328
E ++++S + LGY LI+ YASLGNK+ +++ W + K C + +YI +L SLVK G
Sbjct: 275 AEKMLNRS-NRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTG 333
Query: 329 ELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWS 388
+LEEAE++ EWE C+ YD RV N++L Y + G I KA+++ ++++G TP +W
Sbjct: 334 DLEEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWE 393
Query: 389 IIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVS 448
I+ G+ NMEKA + M + + WRP ++V +I ++ +EE A+V
Sbjct: 394 ILMEGWVKCENMEKAIDAMHQVFVLMRRCH-WRPSHNIVMAIAEYFEKEEKIEEATAYVR 452
Query: 449 SL-KIKVQKRNMYHALTEAHIRSGQEVDGLLESMKADDI 486
L ++ + +Y L H + + + E MK D +
Sbjct: 453 DLHRLGLASLPLYRLLLRMHEHAKRPAYDIYEMMKLDKL 491
>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820,
mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2
SV=1
Length = 532
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/457 (31%), Positives = 248/457 (54%), Gaps = 8/457 (1%)
Query: 35 ARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEW 94
R+ L R+ L S + +W EG + + EL R++R+LR KR+KHAL++ EW
Sbjct: 59 GRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEW 118
Query: 95 MSGQ-GLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLV 153
M Q + D+AV LDLI K+RGL SAE +F + D+ + +LL+ YV+ L
Sbjct: 119 MVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLS 178
Query: 154 DESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRIC 213
D++ +L +KM E G S L YN ++ +Y + GQ EK+P ++ ++K PD +Y +
Sbjct: 179 DKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIR-TSPDIVTYNLW 237
Query: 214 INSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIV 273
+ ++ + +++ E V + + + ++ DW TYS + N Y EKA + LK+ E +V
Sbjct: 238 LTAFASGNDVEGAEKVYLKAKEEK-LNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLV 296
Query: 274 SKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEA 333
SK K+ + Y LIS +A+LG+KD + W K KK + +Y++M+ ++VK+GE E+A
Sbjct: 297 SK-KNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQA 355
Query: 334 EKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAG 393
+ + +EWE D R+PN+IL Y + + + + IV+KG P+ ++W I+
Sbjct: 356 KGLYDEWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWA 415
Query: 394 YADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSL-KI 452
Y + +MEK +C +A+ + K W LV L + +V+ E ++ L K
Sbjct: 416 YLKRKDMEKVLDCFGKAI---DSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKA 472
Query: 453 KVQKRNMYHALTEAHIRSGQEVDGLLESMKADDIDED 489
+Y++L + ++G+ + E M D+++ D
Sbjct: 473 GYVNTQLYNSLLRTYAKAGEMALIVEERMAKDNVELD 509
>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990,
mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2
SV=1
Length = 502
Score = 226 bits (576), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 144/468 (30%), Positives = 249/468 (53%), Gaps = 13/468 (2%)
Query: 14 RNFTKT----NLEIFTRAYRAVKPVARNN--LYSRISPLGDPDVS-LTPVLDQWVLEGQK 66
R F T EI A +V A+ + +Y ++S LG + L+Q+V+EG
Sbjct: 10 RRFCATLATATAEISGEAAASVPTKAKKHRSIYKKLSSLGTRGGGKMEETLNQFVMEGVP 69
Query: 67 ISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETY 126
+ + +L R + LR ++ + AL++ EWM + +AF+ DHA++L+LI K +GLE+AETY
Sbjct: 70 VKKHDLIRYAKDLRKFRQPQRALEIFEWMERKEIAFTGSDHAIRLNLIAKSKGLEAAETY 129
Query: 127 FNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTG 186
FNSL+D K YG+LLNCY E ++ + + M ++ ++L +N +M +Y G
Sbjct: 130 FNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLPFNNLMAMYMGLG 189
Query: 187 QHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTY 246
Q EK+P +++ MKE + P + +Y + I S G+ +L +E VL EM+++ W T+
Sbjct: 190 QPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEMKAEGEGIFSWNTF 249
Query: 247 STVANYYIIAGLKEKAIIYLKKCEDIVSKS-KDALGYNHLISHYASLGNKDEMMKFWGLQ 305
+ +A YI GL KA LK E+ ++ +D Y+ LI+ Y + N E+ + W L
Sbjct: 250 ANLAAIYIKVGLYGKAEEALKSLENNMNPDVRDC--YHFLINLYTGIANASEVYRVWDLL 307
Query: 306 KIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMI 365
K + N Y+TML +L K+ +++ +K+ EWE +C+ YD R+ N+ + Y ++ M
Sbjct: 308 KKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMANVAISSYLKQNMY 367
Query: 366 EKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPS 425
E+A+AV +KK K + ++ + + A + + AV +++K W
Sbjct: 368 EEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQADLALKHFEA--AVLDQDKNWTWSSE 425
Query: 426 LVSSILDWLGDNRDVEEVEAFVSSL-KIKVQKRNMYHALTEAHIRSGQ 472
L+SS + +DV+ E F +L K Y L + ++ +G+
Sbjct: 426 LISSFFLHFEEAKDVDGAEEFCKTLTKWSPLSSETYTLLMKTYLAAGK 473
>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370,
mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2
SV=1
Length = 537
Score = 218 bits (555), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 137/439 (31%), Positives = 235/439 (53%), Gaps = 11/439 (2%)
Query: 15 NFTKTNLEIFTRAYRAVKPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQR 74
N +T++ T A R + LY ++S L ++ L+Q+++EG + + +L R
Sbjct: 55 NGVRTSVAAPTVASR------QRELYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFR 108
Query: 75 VIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED 134
+ LR +R +HA ++ +WM + + FSV DHA+ LDLIGK +GLE+AE YFN+L+
Sbjct: 109 CAKTLRKFRRPQHAFEIFDWMEKRKMTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSA 168
Query: 135 KVDK-LYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPD 193
K + YGAL+NCY E +++ + + M E+ ++L +N +M +Y Q EK+P
Sbjct: 169 KNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPV 228
Query: 194 VLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYY 253
++ MK+ G+ P +Y I + S G+ ++L +E ++ EM S W T+S +A Y
Sbjct: 229 LVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIY 288
Query: 254 IIAGLKEKAIIYLKKCEDIVS-KSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQ 312
AGL EKA LK E+ ++ ++D+ ++ L+S YA + E+ + W K +
Sbjct: 289 TKAGLYEKADSALKSMEEKMNPNNRDS--HHFLMSLYAGISKGPEVYRVWESLKKARPEV 346
Query: 313 LNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVL 372
N Y+ ML ++ K+G+L+ +K+ EWE C+ YD R+ NI + Y + M E+A+ +L
Sbjct: 347 NNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKIL 406
Query: 373 KEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENK-FWRPKPSLVSSIL 431
+KK K P + ++ + + + A + ++ A++ ENK W LVS
Sbjct: 407 DGAMKKSKGPFSKARQLLMIHLLENDKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFF 466
Query: 432 DWLGDNRDVEEVEAFVSSL 450
+DV+ E F L
Sbjct: 467 LHFEKAKDVDGAEDFCKIL 485
>sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020
OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2
Length = 566
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/475 (28%), Positives = 236/475 (49%), Gaps = 37/475 (7%)
Query: 42 RISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLA 101
RI+ + + PVL+QW +G +++ ++ +I++LR + ALQVSEWMS + +
Sbjct: 41 RITDALHRNAQIIPVLEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKIC 100
Query: 102 FSV-HDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESL--- 157
+ D A +L LI V GLE AE +F S+ + D +Y +LLN Y R D++L
Sbjct: 101 NLIPEDFAARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARS---DKTLCKA 157
Query: 158 -SLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINS 216
+ QKM+++G + YN +M LY+ EK+ ++LL+MK+N V DN + +
Sbjct: 158 EATFQKMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKL 217
Query: 217 YGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKS 276
Y A +++ ME L + E I ++W T +A Y+ A KA+ L+ E +V +
Sbjct: 218 YSAVCDVTEMEKFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQK 277
Query: 277 KDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKM 336
Y+HL+ Y GN++E+++ W L K K ++ N Y T++ SL+K+ ++ AE++
Sbjct: 278 SLKSAYDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEI 337
Query: 337 LEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGK------TPTPNSWS-- 388
+ WE +D R+P ++ GY +GM EKA+ ++ K + TP W
Sbjct: 338 YKVWESLPLEFDHRIPTMLASGYRDRGMTEKAEKLMNSKTIKDRRMNKPVTPLLEQWGDQ 397
Query: 389 -------IIAAGYADKNNMEKAF---ECMKEALAVHEENKFWRPKPSLVSSILDWLGDNR 438
+ D KA E M E + + + + L ++L
Sbjct: 398 MKPSDLKCLIKNLRDSKQFSKALQVSEWMGEKQVCNLYLEDYAARLYLTENVL------- 450
Query: 439 DVEEVEAFVSSLKIKVQKRNMYHALTEAHIRS----GQEVDGLLESMKADDIDED 489
+EE E + ++ ++ ++Y AL ++ +S G VD +L M+ +++D D
Sbjct: 451 GLEEAEKYFENIPENMKDYSVYVALLSSYAKSDKNLGNMVDEILREMEENNVDPD 505
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 104/211 (49%), Gaps = 37/211 (17%)
Query: 53 LTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMS-GQGLAFSVHDHAVQL 111
+TP+L+QW G ++ +L+ +I+ LR K+F ALQVSEWM Q + D+A +L
Sbjct: 387 VTPLLEQW---GDQMKPSDLKCLIKNLRDSKQFSKALQVSEWMGEKQVCNLYLEDYAARL 443
Query: 112 DLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGS 171
L V GLE AE YF ++ + K +Y ALL+ Y + D++L M
Sbjct: 444 YLTENVLGLEEAEKYFENIPENMKDYSVYVALLSSYAKS---DKNLGNM----------- 489
Query: 172 ALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQ 231
+ ++L +M+EN V PD + + Y A S++ +ME ++
Sbjct: 490 -------------------VDEILREMEENNVDPDLITVNHVLKVYAAESKIQAMEMFMR 530
Query: 232 EMESQSHISMDWGTYSTVANYYIIAGLKEKA 262
++ I ++ GT +A Y+ AGL +K+
Sbjct: 531 RWGTEDGIKLERGTMIAMAKAYVKAGLTKKS 561
>sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450,
mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2
SV=1
Length = 409
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/335 (31%), Positives = 188/335 (56%), Gaps = 19/335 (5%)
Query: 24 FTRAYRAVKPVA---------RNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQR 74
F+++Y A + +++L SRI L P S T VL++W+ EG +++ EL+
Sbjct: 33 FSKSYNADAAIGNSLVEESEEKDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELRE 92
Query: 75 VIRQLRSRKRFKHALQVSEWM-SGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDE 133
+ ++LR +R+KHAL+V+EWM + S D+A ++DLI KV G+++AE YF L+ +
Sbjct: 93 ISKELRRTRRYKHALEVTEWMVQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDID 152
Query: 134 DKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGS--FGSALNYNGIMCLYTNTGQHEKI 191
K + Y +LL+ Y + + +L +++ E S FG A+ YN +M LY + GQ EK+
Sbjct: 153 SKTAETYTSLLHAYAASKQTERAEALFKRIIESDSLTFG-AITYNEMMTLYMSVGQVEKV 211
Query: 192 PDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVAN 251
P+V+ +K+ V PD F+Y + ++S A + + +L+EM + + W Y + +
Sbjct: 212 PEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTS 271
Query: 252 YYIIAGLKEKAIIYLK-KCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCK 310
YI + A L + E +S+ ++ + Y+ L+ + LGNK + + W + ++
Sbjct: 272 IYINSSRVTNAESTLPVEAEKSISQ-REWITYDFLMILHTGLGNKVMIDQIW--KSLRNT 328
Query: 311 KQL--NRDYITMLGSLVKIGELEEAEKMLEEWELS 343
Q+ +R YI +L S + +G L EAE+++ +W+ S
Sbjct: 329 NQILSSRSYICVLSSYLMLGHLREAEEIIHQWKES 363
>sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270,
mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1
SV=1
Length = 596
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/450 (28%), Positives = 224/450 (49%), Gaps = 31/450 (6%)
Query: 49 PDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWM-SGQGLAFSVHDH 107
P +S+ LD+WV EG +I+ +E+ + + QLR R+ + ALQ+SEW+ + + + + D+
Sbjct: 140 PGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTERDY 199
Query: 108 AVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMG 167
A +LDL K+RGLE E + K + LY LL V G V +S + KMK++G
Sbjct: 200 ASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDLG 259
Query: 168 SFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSME 227
S + ++ L+ +KI DVLL M++ + P +Y+I I+ GA +++S ME
Sbjct: 260 FPLSGFTCDQMLLLHKRI-DRKKIADVLLLMEKENIKPSLLTYKILIDVKGATNDISGME 318
Query: 228 NVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLIS 287
+L+ M+ + + +D+ T + A +Y AGLK+KA LK+ E S + + L+S
Sbjct: 319 QILETMKDEG-VELDFQTQALTARHYSGAGLKDKAEKVLKEMEG-ESLEANRRAFKDLLS 376
Query: 288 HYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLE-----EWEL 342
YASLG +DE+ + W KI K + + + + K+ +++EAE + E +
Sbjct: 377 IYASLGREDEVKRIW---KICESKPYFEESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRA 433
Query: 343 SCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEK 402
S Y +++L Y M+ K ++K + + G +W + Y + +EK
Sbjct: 434 SSSTY-----SVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEK 488
Query: 403 AFECMKEALAVHEENKFWRPKPSLVS--SILDWLGDNRDVEEVEAFVSSLKIK----VQK 456
A + +A +K K + S I+D DV E LK++ +
Sbjct: 489 ADSLLDKA------SKQSHTKLMMNSFMYIMDEYSKRGDVHNTEKIF--LKMREAGYTSR 540
Query: 457 RNMYHALTEAHIRSGQEVDGLLESMKADDI 486
+ AL +A+I + G+ + +KAD+I
Sbjct: 541 LRQFQALMQAYINAKSPAYGMRDRLKADNI 570
>sp|Q9XI21|PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480,
mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2
SV=2
Length = 594
Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 118/442 (26%), Positives = 222/442 (50%), Gaps = 19/442 (4%)
Query: 51 VSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMS-GQGLAFSVHDHAV 109
+S+ LD+WV +G+ + E + + QLR R+ F ALQ++EW+ + D+A
Sbjct: 140 LSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDENKQFEMEERDYAC 199
Query: 110 QLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSF 169
+LDLI KVRG E Y ++ + + + +Y LL +V V + ++ KMK++G
Sbjct: 200 RLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGFP 259
Query: 170 GSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENV 229
S N ++ LY + +KI DVLL +++ + P+ +Y+I I++ G+ ++++ ME +
Sbjct: 260 LSTFTCNQMLILYKRVDK-KKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQI 318
Query: 230 LQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHY 289
++ M+S+ + +D + +A +Y AGLKEKA LK+ E S ++ L+S Y
Sbjct: 319 VETMKSEG-VELDLRARALIARHYASAGLKEKAEKVLKEMEG-ESLEENRHMCKDLLSVY 376
Query: 290 ASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLV---KIGELEEAEKMLEEWELSCYC 346
L +DE+ + W + C++ N Y +L +++ KI ++++AE + E+ +
Sbjct: 377 GYLQREDEVRRVWKI----CEE--NPRYNEVLAAILAFGKIDKVKDAEAVFEKVLKMSHR 430
Query: 347 YDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFEC 406
V +++L Y M+ + ++K++ G +W + Y + +EKA
Sbjct: 431 VSSNVYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKAESS 490
Query: 407 MKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLK-IKVQKRN-MYHALT 464
+ +A+ ++K +P S ++ DV E +K Q R Y L
Sbjct: 491 LSKAI----QSKQIKPLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFWAYQTLI 546
Query: 465 EAHIRSGQEVDGLLESMKADDI 486
+A++ + G+ E MKAD+I
Sbjct: 547 QAYVNAKAPAYGMKERMKADNI 568
>sp|Q9LRP6|PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590,
mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2
SV=1
Length = 610
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 117/450 (26%), Positives = 213/450 (47%), Gaps = 29/450 (6%)
Query: 52 SLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQG-LAFSVHDHAVQ 110
S+ VL++WV EG+ +S+ E+ I LR RK + LQ+ EW+ F+ ++A Q
Sbjct: 156 SVKHVLEKWVKEGKDLSQAEVTLAIHNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQ 215
Query: 111 LDLIGKVRGLESAETYFNSLNDEDKVDKLYGALL-NCYVREGLVDESLSLMQKMKEMGSF 169
LDL+ KV L+ AE + + + + + +Y LL NC ++ V+++ + KMKE+
Sbjct: 216 LDLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHH-VNKAEDIFNKMKELKFP 274
Query: 170 GSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENV 229
S N ++ LY+ +KI DVLL M+ + P +Y INS G +++ ME +
Sbjct: 275 TSVFACNQLLLLYS-MHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKI 333
Query: 230 LQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHY 289
++ ++ + I +D S +A YYI AGLKE+A +K+ E + L+ Y
Sbjct: 334 VETIKEEG-IELDPELQSILAKYYIRAGLKERAQDLMKEIEG-KGLQQTPWVCRSLLPLY 391
Query: 290 ASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELE-------EAEKMLEEWEL 342
A +G+ D ++++ N Y + ++ G+L+ E+++E++++
Sbjct: 392 ADIGDSD------NVRRLSRFVDQNPRYDNCISAIKAWGKLKEVEEAEAVFERLVEKYKI 445
Query: 343 SCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEK 402
F + I Y++ M+ K ++K + G P++W + Y + K
Sbjct: 446 FPMMPYFALMEI----YTENKMLAKGRDLVKRMGNAGIAIGPSTWHALVKLYIKAGEVGK 501
Query: 403 AFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQKRNM--Y 460
A + A ++NK RP + +IL+ DV E +K + Y
Sbjct: 502 AELILNRAT---KDNKM-RPMFTTYMAILEEYAKRGDVHNTEKVFMKMKRASYAAQLMQY 557
Query: 461 HALTEAHIRSGQEVDGLLESMKADDIDEDK 490
+ A+I + G++E MKAD++ +K
Sbjct: 558 ETVLLAYINAKTPAYGMIERMKADNVFPNK 587
>sp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590,
mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2
SV=1
Length = 534
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 95/429 (22%), Positives = 191/429 (44%), Gaps = 16/429 (3%)
Query: 51 VSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWM-SGQGLAFSVHDHAV 109
V++ L W+ +G + ++ I +LR R K AL++ EW+ + +++
Sbjct: 79 VTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIRERPYRLGELEYSY 138
Query: 110 QLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSF 169
L+ K+ G+ E F + E + + LY L+ + +G++ +L M+KM+E+G
Sbjct: 139 LLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKKMRELGYR 198
Query: 170 GSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENV 229
S L YN ++ + G+ + I L MK + P +Y I + + +
Sbjct: 199 TSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHNIDGVLKA 258
Query: 230 LQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHY 289
M+ ++ + + +Y +A + +A L A Y ++ E ++ + + L+ Y
Sbjct: 259 FDGMK-KAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSIT-GDNWSTLDILMILY 316
Query: 290 ASLGNKDEMMKFW----GLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCY 345
LG + E+ + W G ++ K Y+ + ++G L+ AE++ E +
Sbjct: 317 GRLGKEKELARTWNVIRGFHHVRSK-----SYLLATEAFARVGNLDRAEELWLEMKNVKG 371
Query: 346 CYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFE 405
+ N +L Y + G+IEKA V +E+ G P ++ +A G A M++A +
Sbjct: 372 LKETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLMKEALK 431
Query: 406 CMKEALAVHEENKFWRPKPSLVS--SILDWLGDNRDVEEVEAFVSSLKIKVQKRN--MYH 461
++ L + P L + SI++ + DVE E +K R +Y+
Sbjct: 432 NIEMGLNLKTSKSIGSSTPWLETTLSIIECFAEKGDVENSEKLFEEVKNAKYNRYAFVYN 491
Query: 462 ALTEAHIRS 470
AL +A++++
Sbjct: 492 ALFKAYVKA 500
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 115/503 (22%), Positives = 209/503 (41%), Gaps = 60/503 (11%)
Query: 27 AYRAVKPVARNNLYSRISP---LGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRK 83
+Y + P + L S I P G D L+ + + + + + S EL ++ L K
Sbjct: 91 SYHGLSPQGQQVLRSLIEPNFDSGQLDSVLSELFEPFKDKPESTSS-ELLAFLKGLGFHK 149
Query: 84 RFKHALQVSEWMSGQGLAFSVHDH---AVQLDLIGKVRGLESAETYFNSLNDEDKVDKLY 140
+F AL+ +W Q S+ D+ A+ + ++GK + SA FN L ++ +Y
Sbjct: 150 KFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVY 209
Query: 141 G--ALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQH-EKIPDVLLD 197
+L++ + G E++++ +KM+E G + + YN I+ ++ G KI ++
Sbjct: 210 SYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEK 269
Query: 198 MKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAG 257
MK +G+ PD ++Y I S V +EM++ + S D TY+ + + Y G
Sbjct: 270 MKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKA-AGFSYDKVTYNALLDVY---G 325
Query: 258 LKEKAIIYLKKCEDIV--SKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNR 315
+ +K ++V S + YN LIS YA G DE M+ K K
Sbjct: 326 KSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVF 385
Query: 316 DYITMLGSLVKIGELEEAEKMLEEWE---------------------------------- 341
Y T+L + G++E A + EE
Sbjct: 386 TYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEI 445
Query: 342 -LSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNM 400
+ D N +L + Q GM + V KE+ + G P +++ + + Y+ +
Sbjct: 446 NVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSF 505
Query: 401 EKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQKRN-- 458
E+A + L + P S +++L L E+ E ++ ++ K N
Sbjct: 506 EQAMTVYRRML-----DAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNEL 560
Query: 459 MYHALTEAHIRSGQEVDGLLESM 481
Y +L A+ +G+E+ GL+ S+
Sbjct: 561 TYCSLLHAYA-NGKEI-GLMHSL 581
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 2/160 (1%)
Query: 142 ALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKEN 201
++++ Y R +V ++ ++ MKE G S YN +M +++ + K ++L ++
Sbjct: 634 SMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAK 693
Query: 202 GVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEK 261
G+ PD SY I +Y + + + EM + S I D TY+T Y + E+
Sbjct: 694 GIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRN-SGIVPDVITYNTFIGSYAADSMFEE 752
Query: 262 AIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKF 301
AI ++ + YN ++ Y L KDE F
Sbjct: 753 AIGVVRYMIKHGCRPNQNT-YNSIVDGYCKLNRKDEAKLF 791
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 119/290 (41%), Gaps = 12/290 (4%)
Query: 120 LESAETYFNSLNDEDKVDKL--YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNG 177
E A T + + D L Y +L R G+ ++S ++ +M++ + L Y
Sbjct: 505 FEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCS 564
Query: 178 IMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQS 237
++ Y N + + + ++ + P + + L E E++ +
Sbjct: 565 LLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERG 624
Query: 238 HISMDWGTYSTVANYYIIAGLKEKA---IIYLKKCEDIVSKSK-DALGYNHLISHYASLG 293
S D T +++ + Y + KA + Y+K+ S + ++L Y H S A G
Sbjct: 625 -FSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMH--SRSADFG 681
Query: 294 NKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPN 353
+E+++ + IK Y T++ + + + +A ++ E S D N
Sbjct: 682 KSEEILREILAKGIKPDII---SYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYN 738
Query: 354 IILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKA 403
+ Y+ M E+A V++ ++K G P N+++ I GY N ++A
Sbjct: 739 TFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEA 788
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/359 (22%), Positives = 154/359 (42%), Gaps = 12/359 (3%)
Query: 88 ALQVSEWMSGQGLAFSVHDHAVQLD-LIGKVRGLESAETYFNSLNDEDKVDKL--YGALL 144
AL + G V + LD I R + AE F + + + Y L+
Sbjct: 153 ALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILI 212
Query: 145 NCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVP 204
+ G +D +L+L KM+ G + + YN ++ Y + + +L M G+
Sbjct: 213 RGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLE 272
Query: 205 PDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAG-LKEKAI 263
P+ SY + IN + + VL EM + + S+D TY+T+ Y G + +
Sbjct: 273 PNLISYNVVINGLCREGRMKEVSFVLTEMNRRGY-SLDEVTYNTLIKGYCKEGNFHQALV 331
Query: 264 IYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGS 323
++ + ++ S + Y LI GN + M+F +++ R Y T++
Sbjct: 332 MHAEMLRHGLTPS--VITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDG 389
Query: 324 LVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPT 383
+ G + EA ++L E + + N ++ G+ G +E A AVL+++ +KG +P
Sbjct: 390 FSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPD 449
Query: 384 PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEE 442
S+S + +G+ ++++A +E + K +P SS++ + R +E
Sbjct: 450 VVSYSTVLSGFCRSYDVDEALRVKREMV-----EKGIKPDTITYSSLIQGFCEQRRTKE 503
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/380 (22%), Positives = 165/380 (43%), Gaps = 37/380 (9%)
Query: 56 VLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIG 115
VL + G + E+ +I+ F AL + M GL SV + + +
Sbjct: 297 VLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMC 356
Query: 116 KVRGLESAETYFNSLNDEDKV--DKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSAL 173
K + A + + + ++ Y L++ + ++G ++E+ ++++M + G S +
Sbjct: 357 KAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVV 416
Query: 174 NYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEM 233
YN ++ + TG+ E VL DMKE G+ PD SY ++ + ++ V +EM
Sbjct: 417 TYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM 476
Query: 234 ESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDI------VSKSKDALGYNHLIS 287
+ I D TYS+ +I G E+ K+ D+ V D Y LI+
Sbjct: 477 VEKG-IKPDTITYSS-----LIQGFCEQR--RTKEACDLYEEMLRVGLPPDEFTYTALIN 528
Query: 288 HYASLGNKDEMMKFWGLQKIKCKKQLNRDYIT---MLGSLVKIGELEEAEKML-----EE 339
Y G+ ++ ++ L +K + D +T ++ L K EA+++L EE
Sbjct: 529 AYCMEGDLEKALQ---LHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEE 585
Query: 340 WELS----------CYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSI 389
S C +F+ ++ G+ KGM+ +AD V + ++ K P +++I
Sbjct: 586 SVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNI 645
Query: 390 IAAGYADKNNMEKAFECMKE 409
+ G+ ++ KA+ KE
Sbjct: 646 MIHGHCRAGDIRKAYTLYKE 665
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/372 (21%), Positives = 158/372 (42%), Gaps = 49/372 (13%)
Query: 112 DLIGKVRGLESAETYFNSLNDEDKV----DKLYGALLNCYVREGLVDESLSLMQKMKEMG 167
D+ K E A F SL + + ++ ++ Y R L+D++LS++ + G
Sbjct: 105 DVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHG 164
Query: 168 SFGSALNYNGIMCLYTNTGQHEKIP-DVLLDMKENGVPPDNFSYRICINSYGARSELSSM 226
L+YN ++ + ++ +V +M E+ V P+ F+Y I I + +
Sbjct: 165 FMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVA 224
Query: 227 ENVLQEMESQSHISMDWGTYSTVANYYI----------------IAGLKEKAIIY----- 265
+ +ME++ + + TY+T+ + Y + GL+ I Y
Sbjct: 225 LTLFDKMETKGCLP-NVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
Query: 266 -------LKKCEDIVSK------SKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQ 312
+K+ ++++ S D + YN LI Y GN + +
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTP 343
Query: 313 LNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVL 372
Y +++ S+ K G + A + L++ + C + R ++ G+SQKG + +A VL
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403
Query: 373 KEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLV--SSI 430
+E+ G +P+ +++ + G+ ME +A+AV E+ K P +V S++
Sbjct: 404 REMNDNGFSPSVVTYNALINGHCVTGKME-------DAIAVLEDMKEKGLSPDVVSYSTV 456
Query: 431 LDWLGDNRDVEE 442
L + DV+E
Sbjct: 457 LSGFCRSYDVDE 468
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 167/353 (47%), Gaps = 26/353 (7%)
Query: 70 LELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNS 129
++ R+ + K+++ L + + M +G+A S++ ++ ++ + R L A +
Sbjct: 89 IDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGK 148
Query: 130 LN----DEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGI---MCLY 182
+ + D V ++ LLN E V E+L L+ +M EMG + + N + +CL
Sbjct: 149 IMKLGYEPDTV--IFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL- 205
Query: 183 TNTGQHEKIPD--VLLD-MKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHI 239
+ K+ D VL+D M E G P+ +Y +N + + +L++ME + +I
Sbjct: 206 -----NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKME-ERNI 259
Query: 240 SMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMM 299
+D YS + + G + A + E I D + YN LI + + G D+
Sbjct: 260 KLDAVKYSIIIDGLCKDGSLDNAFNLFNEME-IKGFKADIITYNTLIGGFCNAGRWDDGA 318
Query: 300 KFWGLQKIKCKKQLNRDYIT---MLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIIL 356
K L + K++++ + +T ++ S VK G+L EA+++L+E + N ++
Sbjct: 319 K---LLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLI 375
Query: 357 LGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKE 409
G+ ++ +E+A ++ ++ KG P +++I+ GY N ++ E +E
Sbjct: 376 DGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFRE 428
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/354 (20%), Positives = 160/354 (45%), Gaps = 8/354 (2%)
Query: 56 VLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIG 115
++D+ V G K + + L ++ L + A+ + + M G + + L+++
Sbjct: 180 LVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMC 239
Query: 116 KVRGLESAETYFNSLNDED-KVDKL-YGALLNCYVREGLVDESLSLMQKMKEMGSFGSAL 173
K A + + + K+D + Y +++ ++G +D + +L +M+ G +
Sbjct: 240 KSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADII 299
Query: 174 NYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEM 233
YN ++ + N G+ + +L DM + + P+ ++ + I+S+ +L + +L+EM
Sbjct: 300 TYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEM 359
Query: 234 ESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKS--KDALGYNHLISHYAS 291
Q I+ + TY+++ + + E+AI + + ++SK D + +N LI+ Y
Sbjct: 360 -MQRGIAPNTITYNSLIDGFCKENRLEEAI---QMVDLMISKGCDPDIMTFNILINGYCK 415
Query: 292 LGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRV 351
D+ ++ + ++ Y T++ + G+LE A+K+ +E D
Sbjct: 416 ANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVS 475
Query: 352 PNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFE 405
I+L G G +EKA + +I K + II G + + ++ A++
Sbjct: 476 YKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWD 529
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/275 (20%), Positives = 132/275 (48%), Gaps = 12/275 (4%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
+ L++ +V+EG + E+ L+++M + G + + YN ++ + + E+ ++ M
Sbjct: 336 FSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMI 395
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLK 259
G PD ++ I IN Y + + + +EM + I+ + TY+T+ + +G
Sbjct: 396 SKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIA-NTVTYNTLVQGFCQSGKL 454
Query: 260 EKAIIYLKKCEDIVSKS--KDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRD- 316
E A K +++VS+ D + Y L+ G ++ ++ +G KI+ K ++ D
Sbjct: 455 EVA---KKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFG--KIE-KSKMELDI 508
Query: 317 --YITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKE 374
Y+ ++ + ++++A + L D R NI++ +K + KAD + ++
Sbjct: 509 GIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRK 568
Query: 375 IVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKE 409
+ ++G P +++I+ + ++ A E ++E
Sbjct: 569 MTEEGHAPDELTYNILIRAHLGDDDATTAAELIEE 603
>sp|Q9C545|PPR72_ARATH Putative pentatricopeptide repeat-containing protein At1g43010
OS=Arabidopsis thaliana GN=At1g43010 PE=3 SV=1
Length = 257
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 23 IFTRAYRAVKPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSR 82
+F R+Y + P A L SRI + S+ P+L+QW +G +++ L+ +I+ L
Sbjct: 23 LFRRSYETL-PAANQTLPSRIKTDINQKASIIPLLEQWRKQGYEVNPSHLRGLIKNLSDC 81
Query: 83 KRFKHALQVSEWMSGQGLAFSV-HDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYG 141
K F AL+ S+WM + + D A QL L+ V GLE AE F ++ ++ + Y
Sbjct: 82 KNFTTALEASKWMFKHSVFDNFPEDCAAQLHLVNTVLGLEEAEKMFKNIPEKMRD---YS 138
Query: 142 ALLNCYVRE-GLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKE 200
LL+ Y + VD++ + +KM+E+G +N ++CLY + + + +L +K+
Sbjct: 139 VLLSSYTKPVRTVDKAEATFKKMRELGFLLKPYLFNSMICLYGQLQRLDMVEKLLYKLKK 198
Query: 201 NGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKE 260
N + + Y + +++ME + S+ I ++ T +A Y AG E
Sbjct: 199 NNMEVGSLKVNNVSRVY---ANINAMEK-FKTWVSKEGIELERDTIVAMAKAYHRAGSIE 254
Query: 261 KA 262
KA
Sbjct: 255 KA 256
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/400 (20%), Positives = 174/400 (43%), Gaps = 44/400 (11%)
Query: 88 ALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKL--YGALLN 145
A V + +S G+ +V+ + ++ + K +E T+ + + ++ + Y L++
Sbjct: 219 AWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLIS 278
Query: 146 CYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPP 205
Y +GL++E+ LM M G YN ++ G++E+ +V +M +G+ P
Sbjct: 279 AYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSP 338
Query: 206 DNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIY 265
D+ +YR + + ++ E V +M S+ + D +S++ + + +G +KA++Y
Sbjct: 339 DSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVP-DLVCFSSMMSLFTRSGNLDKALMY 397
Query: 266 LKKCEDIVSKSKDALGYNHLISHYASLGN-------KDEMMK-------------FWGLQ 305
++ D + Y LI Y G ++EM++ GL
Sbjct: 398 FNSVKE-AGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLC 456
Query: 306 KIK------------CKKQLNRDYIT---MLGSLVKIGELEEAEKMLEEWELSCYCYDFR 350
K K ++ L D T ++ K+G L+ A ++ ++ + D
Sbjct: 457 KRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVV 516
Query: 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEA 410
N +L G+ + G I+ A + ++V K PTP S+SI+ K ++ +AF E
Sbjct: 517 TYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEM 576
Query: 411 LAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSL 450
++ K +P + +S++ + + + E+F+ +
Sbjct: 577 IS-----KNIKPTVMICNSMIKGYCRSGNASDGESFLEKM 611
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 86/412 (20%), Positives = 166/412 (40%), Gaps = 40/412 (9%)
Query: 75 VIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSL--ND 132
+I S+ + A ++ M G+G + V+ + ++ + K E A+ F + +
Sbjct: 276 LISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSG 335
Query: 133 EDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIP 192
Y +LL ++G V E+ + M+ + ++ +M L+T +G +K
Sbjct: 336 LSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL 395
Query: 193 DVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANY 252
+KE G+ PDN Y I I Y + +S N+ EM Q +MD TY+T+ +
Sbjct: 396 MYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQG-CAMDVVTYNTILHG 454
Query: 253 Y-----------IIAGLKEKAII-----------------YLKKCEDIVSKSK------D 278
+ + E+A+ L+ ++ K K D
Sbjct: 455 LCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLD 514
Query: 279 ALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLE 338
+ YN L+ + +G+ D + W K Y ++ +L G L EA ++ +
Sbjct: 515 VVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWD 574
Query: 339 EWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKN 398
E + N ++ GY + G ++ L++++ +G P S++ + G+ +
Sbjct: 575 EMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREE 634
Query: 399 NMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSL 450
NM KAF +K+ + EE P +SIL ++E E + +
Sbjct: 635 NMSKAFGLVKK---MEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKM 683
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/334 (20%), Positives = 133/334 (39%), Gaps = 40/334 (11%)
Query: 142 ALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKEN 201
AL+ VR G V+ + + Q++ G + N ++ G+ EK+ L ++E
Sbjct: 205 ALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEK 264
Query: 202 GVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEK 261
GV PD +Y I++Y ++ + ++ M + S TY+TV N G E+
Sbjct: 265 GVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKG-FSPGVYTYNTVINGLCKHGKYER 323
Query: 262 A--------------------IIYLKKCE--DIVSKSK------------DALGYNHLIS 287
A + ++ C+ D+V K D + ++ ++S
Sbjct: 324 AKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMS 383
Query: 288 HYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCY 347
+ GN D+ + ++ K N Y ++ + G + A + E
Sbjct: 384 LFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAM 443
Query: 348 DFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECM 407
D N IL G ++ M+ +AD + E+ ++ P + +I+ G+ N++ A E
Sbjct: 444 DVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELF 503
Query: 408 KEALAVHEENKFWRPKPSLVSSILDWLGDNRDVE 441
++ + K R +++LD G D++
Sbjct: 504 QKM-----KEKRIRLDVVTYNTLLDGFGKVGDID 532
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/289 (19%), Positives = 120/289 (41%), Gaps = 22/289 (7%)
Query: 142 ALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLD--MK 199
A+++ VR G + ++ S + +M N + ++N G ++ + D+L+ ++
Sbjct: 118 AMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQ 177
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVA------NYY 253
+ + ++ + + S G + + ++ + + + WG Y ++ N Y
Sbjct: 178 ARKLREAHEAFTL-LRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVY 236
Query: 254 IIA---------GLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGL 304
+ G EK +L + ++ D + YN LIS Y+S G +E +
Sbjct: 237 TLNIMVNALCKDGKMEKVGTFLSQVQE-KGVYPDIVTYNTLISAYSSKGLMEEAFELMNA 295
Query: 305 QKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGM 364
K Y T++ L K G+ E A+++ E S D +L+ +KG
Sbjct: 296 MPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGD 355
Query: 365 IEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKA---FECMKEA 410
+ + + V ++ + P +S + + + N++KA F +KEA
Sbjct: 356 VVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEA 404
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKE--MGSFGSALNYNGIMCLYTNTGQHEKIPDVLLD 197
Y L+ +VRE + ++ L++KM+E G YN I+ + Q ++ VL
Sbjct: 623 YNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRK 682
Query: 198 MKENGVPPDNFSYRICINSYGARSELSSMENVLQEM 233
M E GV PD +Y IN + ++ L+ + EM
Sbjct: 683 MIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEM 718
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 109/535 (20%), Positives = 215/535 (40%), Gaps = 96/535 (17%)
Query: 17 TKTNLEIFTRAYRAVKPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVI 76
T T E F R + ++ V N+L+ D++L P+ WV RV+
Sbjct: 72 TSTYSEDFDRDW--IRKVVHNDLWDDPGLEKLFDLTLAPI---WV-----------PRVL 115
Query: 77 RQLRSRKRFKHALQVSEW-MSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSL----N 131
+L+ K A + +W M+ G SV + + ++ R A + +
Sbjct: 116 VELKEDP--KLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKA 173
Query: 132 DEDKVDKL-------------YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGI 178
D D D L + AL + + G+++E++ KMK F + NG+
Sbjct: 174 DCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGL 233
Query: 179 MCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSH 238
+ + G+ + + DM G P F+Y I I+ ++ + + +EM+ +
Sbjct: 234 LHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGL 293
Query: 239 ISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEM 298
+ D TY+++ + + G + + + ++ +D+ + D + YN LI+ + G
Sbjct: 294 VP-DTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEP-DVITYNALINCFCKFGKLPIG 351
Query: 299 MKFW------GL---------------------QKIKCKKQLNR--------DYITMLGS 323
++F+ GL Q IK + R Y +++ +
Sbjct: 352 LEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA 411
Query: 324 LVKIGELEEA----EKMLE---EWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIV 376
KIG L +A +ML+ EW + Y ++ G +++A+ + ++
Sbjct: 412 NCKIGNLSDAFRLGNEMLQVGVEWNVVTY-------TALIDGLCDAERMKEAEELFGKMD 464
Query: 377 KKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGD 436
G P S++ + G+ NM++A E + E + + +P L + + L
Sbjct: 465 TAGVIPNLASYNALIHGFVKAKNMDRALELLNEL-----KGRGIKPDLLLYGTFIWGLCS 519
Query: 437 NRDVEEVEAFVSSLKIKVQKRN--MYHALTEAHIRSGQEVDG--LLESMKADDID 487
+E + ++ +K K N +Y L +A+ +SG +G LL+ MK DI+
Sbjct: 520 LEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIE 574
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 90/472 (19%), Positives = 189/472 (40%), Gaps = 30/472 (6%)
Query: 21 LEIFTRAYR-AVKPVAR--NNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIR 77
++ F++ R V P R N L R + LG D + + G + + +I
Sbjct: 212 IQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTD-DVKRFFKDMIGAGARPTVFTYNIMID 270
Query: 78 QLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLND---ED 134
+ + A + E M +GL + +D GKV L+ +F + D E
Sbjct: 271 CMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEP 330
Query: 135 KVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDV 194
V Y AL+NC+ + G + L ++MK G + ++Y+ ++ + G ++
Sbjct: 331 DVIT-YNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKF 389
Query: 195 LLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYI 254
+DM+ G+ P+ ++Y I+ A ++ ++ + + + ++W + A +
Sbjct: 390 YVDMRRVGLVPNEYTYTSLID---ANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTA---L 443
Query: 255 IAGLKEKAIIYLKKCEDIVSKSKDA------LGYNHLISHYASLGNKDEMMKFWGLQKIK 308
I GL + +K+ E++ K A YN LI + N D ++ K +
Sbjct: 444 IDGLCDAE--RMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGR 501
Query: 309 CKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKA 368
K Y T + L + ++E A+ ++ E + + + ++ Y + G +
Sbjct: 502 GIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEG 561
Query: 369 DAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKF-WRPKPSLV 427
+L E+ + T ++ ++ G + KA + N F + ++
Sbjct: 562 LHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRI-----SNDFGLQANAAIF 616
Query: 428 SSILDWLGDNRDVEEVEAFVSSLKIK--VQKRNMYHALTEAHIRSGQEVDGL 477
++++D L + VE + K V R Y +L + + + G ++ L
Sbjct: 617 TAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEAL 668
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 8/143 (5%)
Query: 99 GLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVD--KLYGALLNCYVREGLVDES 156
GL + +D + K +E+A T F + + V Y +L++ ++G V E+
Sbjct: 608 GLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEA 667
Query: 157 LSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINS 216
L+L KM E+G L Y ++ ++ Q +K L +M G+ PD +CI+
Sbjct: 668 LALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEV---LCISV 724
Query: 217 YGARSELSSMENVLQEMESQSHI 239
EL ++ + +E QS++
Sbjct: 725 LKKHYELGCID---EAVELQSYL 744
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 150/337 (44%), Gaps = 14/337 (4%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTG-QHEKIPDVLLDM 198
+ AL++ Y R GL +E++S+ MKE G + + YN ++ G + +++ +M
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEM 330
Query: 199 KENGVPPDNFSYR--ICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIA 256
+ NGV PD ++ + + S G E + N+ EM ++ I D +Y+T+ +
Sbjct: 331 QRNGVQPDRITFNSLLAVCSRGGLWE--AARNLFDEMTNR-RIEQDVFSYNTLLDAICKG 387
Query: 257 GLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRD 316
G + A L + + + + Y+ +I +A G DE + +G +
Sbjct: 388 GQMDLAFEILAQMP-VKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVS 446
Query: 317 YITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIV 376
Y T+L K+G EEA +L E D N +L GY ++G ++ V E+
Sbjct: 447 YNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMK 506
Query: 377 KKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGD 436
++ P ++S + GY+ ++A E +E ++ R L S+++D L
Sbjct: 507 REHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREF-----KSAGLRADVVLYSALIDALCK 561
Query: 437 NRDVEEVEAFVSSLKIKVQKRNM--YHALTEAHIRSG 471
N V + + + + N+ Y+++ +A RS
Sbjct: 562 NGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSA 598
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 143/320 (44%), Gaps = 7/320 (2%)
Query: 88 ALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAET--YFNSLNDED-KVDKL-YGAL 143
A+ V M GL ++ + +D GK G+E + +F+ + + D++ + +L
Sbjct: 287 AISVFNSMKEYGLRPNLVTYNAVIDACGK-GGMEFKQVAKFFDEMQRNGVQPDRITFNSL 345
Query: 144 LNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGV 203
L R GL + + +L +M +YN ++ GQ + ++L M +
Sbjct: 346 LAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRI 405
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAI 263
P+ SY I+ + N+ EM I++D +Y+T+ + Y G E+A+
Sbjct: 406 MPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLG-IALDRVSYNTLLSIYTKVGRSEEAL 464
Query: 264 IYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGS 323
L++ + K KD + YN L+ Y G DE+ K + K + Y T++
Sbjct: 465 DILREMASVGIK-KDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDG 523
Query: 324 LVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPT 383
K G +EA ++ E++ + D + + ++ + G++ A +++ E+ K+G +P
Sbjct: 524 YSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPN 583
Query: 384 PNSWSIIAAGYADKNNMEKA 403
+++ I + M+++
Sbjct: 584 VVTYNSIIDAFGRSATMDRS 603
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 63/306 (20%), Positives = 123/306 (40%), Gaps = 33/306 (10%)
Query: 75 VIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLND-- 132
VI RF AL + M G+A + L + KV E A +
Sbjct: 415 VIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVG 474
Query: 133 --EDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEK 190
+D V Y ALL Y ++G DE + +MK + L Y+ ++ Y+ G +++
Sbjct: 475 IKKDVVT--YNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKE 532
Query: 191 IPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVA 250
++ + K G+ D Y I++ + S +++ EM ++ IS + TY+++
Sbjct: 533 AMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEM-TKEGISPNVVTYNSII 591
Query: 251 NYYIIAGLKEKAIIY-----LKKCEDIVSKSKDALGYNHLISHYASL----GNKDEMMKF 301
+ + + +++ Y L +S + G N +I + L N+
Sbjct: 592 DAFGRSATMDRSADYSNGGSLPFSSSALSALTETEG-NRVIQLFGQLTTESNNRTTKDCE 650
Query: 302 WGLQKIKCKKQLNR------------DYITMLGSLVKIGELEEAEKMLEEWELSCYCYDF 349
G+Q++ C ++ R + +L + + E+A +LEE L +D
Sbjct: 651 EGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRL----FDN 706
Query: 350 RVPNII 355
+V ++
Sbjct: 707 KVYGVV 712
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/351 (21%), Positives = 164/351 (46%), Gaps = 22/351 (6%)
Query: 70 LELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNS 129
++ R+ + K++ L + + M +G+A +++ ++ ++ + R L A F++
Sbjct: 89 IDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLA---FSA 145
Query: 130 LNDEDKVDKL--------YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCL 181
+ K+ KL + L+N EG V E+L L+ +M EMG + N ++
Sbjct: 146 MG---KIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNG 202
Query: 182 YTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISM 241
+G+ + ++ M E G P+ +Y +N + + +L++ME + +I +
Sbjct: 203 LCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKME-ERNIKL 261
Query: 242 DWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKF 301
D YS + + G + A + E + + + + YN LI + + G D+ K
Sbjct: 262 DAVKYSIIIDGLCKHGSLDNAFNLFNEME-MKGITTNIITYNILIGGFCNAGRWDDGAK- 319
Query: 302 WGLQKIKCKKQLNRDYIT---MLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLG 358
L + K+++N + +T ++ S VK G+L EAE++ +E D ++ G
Sbjct: 320 --LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDG 377
Query: 359 YSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKE 409
+ ++ ++KA+ ++ +V KG P +++I+ GY N ++ E ++
Sbjct: 378 FCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRK 428
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 129/301 (42%), Gaps = 41/301 (13%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
Y +++ + G +D + +L +M+ G + + YN ++ + N G+ + +L DM
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLK 259
+ + P+ ++ + I+S+ +L E + +EM + I+ D TY+++ + +
Sbjct: 326 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRG-IAPDTITYTSLIDGFCKENHL 384
Query: 260 EKAIIYLKKCEDIVSKSKDA--LGYNHLISHYASLGNKDEMMK----------------- 300
+KA + + +VSK D +N LI+ Y D+ ++
Sbjct: 385 DKAN---QMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTY 441
Query: 301 ------FWGLQKIKCKKQLNRDYIT------------MLGSLVKIGELEEAEKMLEEWEL 342
F L K+ K+L ++ ++ +L L GE E+A ++ E+ E
Sbjct: 442 NTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEK 501
Query: 343 SCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEK 402
S D + NII+ G ++ A + + KG P +++I+ G K + +
Sbjct: 502 SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSE 561
Query: 403 A 403
A
Sbjct: 562 A 562
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/323 (20%), Positives = 133/323 (41%), Gaps = 40/323 (12%)
Query: 84 RFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDE--DKVDKLYG 141
+ + A ++ + M +G+A + +D K L+ A + + + D + +
Sbjct: 348 KLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFN 407
Query: 142 ALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKEN 201
L+N Y + +D+ L L +KM G + YN ++ + G+ ++ +M
Sbjct: 408 ILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSR 467
Query: 202 GVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEK 261
VPP+ +Y+I ++ E + +++E +S + +D G Y+ II G+
Sbjct: 468 KVPPNIVTYKILLDGLCDNGESEKALEIFEKIE-KSKMELDIGIYNI-----IIHGM--- 518
Query: 262 AIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITML 321
C SK DA + SL +K K + Y M+
Sbjct: 519 -------CN--ASKVDDAWDL------FCSL-------------PLKGVKPGVKTYNIMI 550
Query: 322 GSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKT 381
G L K G L EAE + + E + D NI++ + G K+ +++E+ + G +
Sbjct: 551 GGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFS 610
Query: 382 PTPNSWSIIAAGYADKNNMEKAF 404
++ ++ +D ++K+F
Sbjct: 611 VDASTIKMVIDMLSD-GRLKKSF 632
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/310 (18%), Positives = 137/310 (44%), Gaps = 29/310 (9%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
+ L++ +V+EG + E+ L ++M G + Y ++ + +K ++ M
Sbjct: 336 FSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMV 395
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLK 259
G P+ ++ I IN Y + + + ++M + ++ D TY+T +I G
Sbjct: 396 SKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVA-DTVTYNT-----LIQGFC 449
Query: 260 EKAIIYLKK--CEDIVSK--SKDALGYNHLISHYASLGNKDEMMKFWGLQKI-KCKKQLN 314
E + + K +++VS+ + + Y L+ G ++ ++ + +KI K K +L+
Sbjct: 450 ELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIF--EKIEKSKMELD 507
Query: 315 RDYITMLGSLVKIGELEEAEKMLEEWELSCYCY------DFRVPNIILLGYSQKGMIEKA 368
++ I + A K+ + W+L C + NI++ G +KG + +A
Sbjct: 508 IGIYNII-----IHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA 562
Query: 369 DAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVS 428
+ + +++ + G P +++I+ + + K+ + ++E + + S +
Sbjct: 563 ELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEEL-----KRCGFSVDASTIK 617
Query: 429 SILDWLGDNR 438
++D L D R
Sbjct: 618 MVIDMLSDGR 627
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 124/269 (46%), Gaps = 10/269 (3%)
Query: 139 LYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDM 198
+Y +++ +G V+ +L +++ MK+MG + YN ++ ++G +L DM
Sbjct: 186 IYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDM 245
Query: 199 KENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGL 258
G+ PD ++ I+ YG +L + EM +S ++ + TY+++ N I GL
Sbjct: 246 MRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRS-VNPNIVTYNSLINGLCIHGL 304
Query: 259 KEKAIIYLKKCEDI-VSKS--KDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNR 315
++A KK ++ VSK +A+ YN LI+ Y D+ MK +
Sbjct: 305 LDEA----KKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTF 360
Query: 316 DYITMLGSLVKIGELEEAEKMLEEWELSCYCY-DFRVPNIILLGYSQKGMIEKADAVLKE 374
Y T+ + G+ AEK+L +SC + D NI+L G G I KA L++
Sbjct: 361 TYNTLYQGYCQAGKFSAAEKVLGRM-VSCGVHPDMYTFNILLDGLCDHGKIGKALVRLED 419
Query: 375 IVKKGKTPTPNSWSIIAAGYADKNNMEKA 403
+ K +++II G + +E A
Sbjct: 420 LQKSKTVVGIITYNIIIKGLCKADKVEDA 448
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 111/267 (41%), Gaps = 6/267 (2%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
+G+L+N + E++SL+ ++ +G + + YN I+ GQ DVL MK
Sbjct: 152 FGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMK 211
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLK 259
+ G+ PD +Y I +L +M IS D T+S + + Y G +
Sbjct: 212 KMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMG-ISPDVITFSALIDVY---GKE 267
Query: 260 EKAIIYLKKCEDIVSKS--KDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDY 317
+ + K+ +++ +S + + YN LI+ G DE K + K Y
Sbjct: 268 GQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTY 327
Query: 318 ITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVK 377
T++ K +++ K+L D N + GY Q G A+ VL +V
Sbjct: 328 NTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVS 387
Query: 378 KGKTPTPNSWSIIAAGYADKNNMEKAF 404
G P +++I+ G D + KA
Sbjct: 388 CGVHPDMYTFNILLDGLCDHGKIGKAL 414
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 59/326 (18%), Positives = 127/326 (38%), Gaps = 39/326 (11%)
Query: 84 RFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYG-- 141
+F AL + M+ S+ D + L I K+ E+ + F L LY
Sbjct: 59 KFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFT 118
Query: 142 ALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKEN 201
L++C+ R + +LS + KM ++G S + + ++ + + + + ++ +
Sbjct: 119 TLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGL 178
Query: 202 GVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEK 261
G P+ Y I+S + ++++ +VL+ M+ I D TY+++ +G
Sbjct: 179 GYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMG-IRPDVVTYNSLITRLFHSGTWGV 237
Query: 262 AIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITML 321
+ ++S +G +++ F L + K+
Sbjct: 238 S--------------------ARILSDMMRMGISPDVITFSALIDVYGKE---------- 267
Query: 322 GSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKT 381
G+L EA+K E + N ++ G G++++A VL +V KG
Sbjct: 268 ------GQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFF 321
Query: 382 PTPNSWSIIAAGYADKNNMEKAFECM 407
P +++ + GY ++ + +
Sbjct: 322 PNAVTYNTLINGYCKAKRVDDGMKIL 347
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/302 (20%), Positives = 131/302 (43%), Gaps = 38/302 (12%)
Query: 139 LYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDM 198
++G L+ + EGL +E+L + +M++ G + + YN +M Y + E++ + +M
Sbjct: 346 VFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEM 405
Query: 199 KENGVPPDNFSYRICINSYGARSELSSMENVLQEME---------SQSHISMDWG----- 244
++ G+ P +Y I +++Y R + +E +L+EME S + + +G
Sbjct: 406 RDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKM 465
Query: 245 ---------------------TYSTVANYYIIAGLKEKAIIYLKK-CEDIVSKSKDALGY 282
+Y+ + + Y ++G EKA ++ C++ + S + Y
Sbjct: 466 SDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVET--Y 523
Query: 283 NHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWEL 342
++ + G+ ++M+ W L + K Y T+L K G EA ++ E+
Sbjct: 524 TSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSK 583
Query: 343 SCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEK 402
N+++ Y++ G K +LKE+ P ++S + + + ++
Sbjct: 584 MGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKR 643
Query: 403 AF 404
AF
Sbjct: 644 AF 645
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 87 HALQVSEW----------MSGQGLAFSVHDHAVQLDLI------GKVRGLESAETYFNSL 130
HA VS W M +G+ SV + LD GK+ E + L
Sbjct: 493 HAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKL-----MEIWKLML 547
Query: 131 NDEDKVDKL-YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHE 189
++ K ++ Y LL+ + ++GL E+ ++ + +MG S + YN +M Y GQ
Sbjct: 548 REKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDA 607
Query: 190 KIPDVLLDMKENGVPPDNFSYRICINSY 217
K+P +L +M + PD+ +Y I ++
Sbjct: 608 KLPQLLKEMAALNLKPDSITYSTMIYAF 635
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 75/347 (21%), Positives = 140/347 (40%), Gaps = 29/347 (8%)
Query: 143 LLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENG 202
L RE + D L L+ + + F YN + + + +++ +V M +
Sbjct: 244 LFTLLGRERMADYILLLLSNLPDKEEFRDVRLYNAAISGLSASQRYDDAWEVYEAMDKIN 303
Query: 203 VPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWG--TYSTVANYYIIAGLKE 260
V PDN + I I + R S + V + E S + W + + + GLKE
Sbjct: 304 VYPDNVTCAILITTL--RKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKE 361
Query: 261 KAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITM 320
+A++ + E +S + + YN L+ Y + +E+ + + K K Y +
Sbjct: 362 EALVIQTEMEKKGIRS-NTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNIL 420
Query: 321 LGSLVKIGELEEAEKMLEEWELSCYCYDFRV-PN-------IILLGYSQKGMIEKADAVL 372
+ + + + + E +L E E D + PN I G ++K ADA L
Sbjct: 421 MDAYARRMQPDIVETLLREME------DLGLEPNVKSYTCLISAYGRTKKMSDMAADAFL 474
Query: 373 KEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILD 432
+ + K G P+ +S++ + Y+ EKA+ +E + +P +S+LD
Sbjct: 475 R-MKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMC-----KEGIKPSVETYTSVLD 528
Query: 433 WL---GDNRDVEEVEAFVSSLKIKVQKRNMYHALTEAHIRSGQEVDG 476
GD + E+ + KIK R Y+ L + + G ++
Sbjct: 529 AFRRSGDTGKLMEIWKLMLREKIK-GTRITYNTLLDGFAKQGLYIEA 574
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/372 (21%), Positives = 160/372 (43%), Gaps = 17/372 (4%)
Query: 83 KRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKV--DKLY 140
K F ++++E+ G + +V + +D K +E A+ F + V ++ Y
Sbjct: 181 KSFDLLIELTEF----GFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTY 236
Query: 141 GALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKE 200
L+N + G+ + + +KM+E G F + YN +M G+ + V +M+E
Sbjct: 237 TVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRE 296
Query: 201 NGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKE 260
GV + +Y I +L+ V+ +M+S I+ + TY+T+ + + G
Sbjct: 297 RGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDG-INPNLITYNTLIDGFCGVGKLG 355
Query: 261 KAIIYLKKCEDIVSK--SKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYI 318
KA L C D+ S+ S + YN L+S + G+ K + + K Y
Sbjct: 356 KA---LSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYT 412
Query: 319 TMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKK 378
++ + + +E+A ++ E D ++++ G+ KG + +A + K +V+K
Sbjct: 413 ILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEK 472
Query: 379 GKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNR 438
P ++ + GY + + +A + +KE E K P + +++ L R
Sbjct: 473 NCEPNEVIYNTMILGYCKEGSSYRALKLLKEM-----EEKELAPNVASYRYMIEVLCKER 527
Query: 439 DVEEVEAFVSSL 450
+E E V +
Sbjct: 528 KSKEAERLVEKM 539
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/343 (18%), Positives = 148/343 (43%), Gaps = 49/343 (14%)
Query: 138 KLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNT------------ 185
+LY ++N YV+ ++ S+S +M + G + +N ++ +
Sbjct: 95 RLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNE 154
Query: 186 ----------------------GQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSEL 223
G+ EK D+L+++ E G P+ Y I+ + E+
Sbjct: 155 NKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEI 214
Query: 224 SSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAI-IYLKKCEDIVSKSKDALGY 282
+++ EM ++ + TY+ + N G+K++ +Y K ED V + Y
Sbjct: 215 EKAKDLFFEMGKLGLVANER-TYTVLINGLFKNGVKKQGFEMYEKMQEDGV--FPNLYTY 271
Query: 283 NHLISHYASLG-NKDEMMKFWGLQK--IKCKKQLNRDYITMLGSLVKIGELEEAEKMLEE 339
N +++ G KD F +++ + C Y T++G L + +L EA K++++
Sbjct: 272 NCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIV---TYNTLIGGLCREMKLNEANKVVDQ 328
Query: 340 WELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNN 399
+ + N ++ G+ G + KA ++ +++ +G +P+ +++I+ +G+ K +
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGD 388
Query: 400 MEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEE 442
A + +KE E + +P + ++D + ++E+
Sbjct: 389 TSGAAKMVKEM-----EERGIKPSKVTYTILIDTFARSDNMEK 426
>sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230
OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1
Length = 757
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 84/408 (20%), Positives = 171/408 (41%), Gaps = 24/408 (5%)
Query: 79 LRSRKRFKHALQVSEWMSGQGLAFSVHD-HAVQLDLIGKVRGLESAETYFNSLN------ 131
L K+ +HALQ W GL D H + ++G+V L A +
Sbjct: 124 LHGAKKLEHALQFFRWTERSGLIRHDRDTHMKMIKMLGEVSKLNHARCILLDMPEKGVPW 183
Query: 132 DEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKI 191
DED ++ L+ Y + G+V ES+ + QKMK++G + +YN + + G++
Sbjct: 184 DED----MFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMMA 239
Query: 192 PDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVAN 251
M GV P +Y + + + L + ++M+++ IS D T++T+ N
Sbjct: 240 KRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTRG-ISPDDATFNTMIN 298
Query: 252 YYI-IAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCK 310
+ + E ++++ + + S + Y +I Y ++ D+ ++ + +
Sbjct: 299 GFCRFKKMDEAEKLFVEMKGNKIGPS--VVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGI 356
Query: 311 KQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYC-YDFRVPNIILLGYSQKGMIEKAD 369
+ Y T+L L G++ EA+ +L+ D + +L+ S+ G + A
Sbjct: 357 EPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPKDNSIFLKLLVSQSKAGDMAAAT 416
Query: 370 AVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECM-----KEALAVHEENKFWRPKP 424
VLK + + ++ + +A + + KE + H++ +P
Sbjct: 417 EVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLLDTLIEKEIILRHQDT--LEMEP 474
Query: 425 SLVSSILDWLGDNRDVEEVEA-FVSSLKIKVQKRNMYHALTEAHIRSG 471
S + I+++L +N + E F +K VQ ++ + L H + G
Sbjct: 475 SAYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQDQDALNNLIRGHAKEG 522
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 83/371 (22%), Positives = 163/371 (43%), Gaps = 20/371 (5%)
Query: 51 VSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSV-HDHAV 109
VS + D+ EG + + +I R + AL+ + M GL SV H H +
Sbjct: 356 VSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTI 415
Query: 110 QLDLIGKVRGLESAETYFNSLNDEDKVDKLYG-----ALLNCYVREGLVDESLSLMQKMK 164
+ G ++G + E L DE L +L+ ++G DE+ L+ KM+
Sbjct: 416 ---IQGWLKGQKHEEAL--KLFDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKME 470
Query: 165 EMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINS-YGARSEL 223
G + ++YN +M + + V ++ E G+ P+N++Y I I+ + E
Sbjct: 471 SRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQ 530
Query: 224 SSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYN 283
+++E V+ M S S+I ++ Y T+ N G KA L + + YN
Sbjct: 531 NALE-VVNHMTS-SNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYN 588
Query: 284 HLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYIT---MLGSLVKIGELEEAEKMLEEW 340
+I + G D + + + C ++ + IT ++ L K +++A +M +E
Sbjct: 589 SIIDGFFKEGEMDSAVAAY---EEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEM 645
Query: 341 ELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNM 400
+ D ++ G+ ++ +E A A+ E++++G P+ ++ + +G+ + NM
Sbjct: 646 KNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNM 705
Query: 401 EKAFECMKEAL 411
A + K+ L
Sbjct: 706 VAALDLYKKML 716
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 127/278 (45%), Gaps = 11/278 (3%)
Query: 139 LYGALLNCYVREGLVDESLSLMQKMKEMGSFG-SALNYNGIMCLYTNTGQHEKIPDVLLD 197
+Y ++N + G ++ L+ M E S ++YN I+ + G+ + +
Sbjct: 550 VYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEE 609
Query: 198 MKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYI-IA 256
M NG+ P+ +Y +N + + + EM+++ + +D Y + + + +
Sbjct: 610 MCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKG-VKLDIPAYGALIDGFCKRS 668
Query: 257 GLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRD 316
++ + ++ + E+ ++ S+ YN LIS + +LGN M+ L K K L D
Sbjct: 669 NMESASALFSELLEEGLNPSQPI--YNSLISGFRNLGN---MVAALDLYKKMLKDGLRCD 723
Query: 317 ---YITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLK 373
Y T++ L+K G L A ++ E + D + +I+ G S+KG K + +
Sbjct: 724 LGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFE 783
Query: 374 EIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEAL 411
E+ K TP ++ + AG+ + N+++AF E L
Sbjct: 784 EMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEML 821
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/389 (20%), Positives = 159/389 (40%), Gaps = 41/389 (10%)
Query: 58 DQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKV 117
DQ +G + S +I+ L R A + + M +G +VH + V +D + +
Sbjct: 290 DQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRD 349
Query: 118 RGLESAETYFNSLNDEDKVDKL--YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNY 175
+E A + + + Y AL+N Y ++G V + L+ M++ + +
Sbjct: 350 GKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTF 409
Query: 176 NGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMES 235
N +M G+ K +L M +NG+ PD SY + I+ +++ +L M
Sbjct: 410 NELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNC 469
Query: 236 QSHISMDWGTYSTVANYYIIAGLKEKAIIYL--------------------KKCEDIVSK 275
I D T++ + N + G + A +L C+ V K
Sbjct: 470 -FDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCK--VGK 526
Query: 276 SKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCK--------KQLNR--------DYIT 319
++DAL + L + + CK ++N+ Y T
Sbjct: 527 TRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTT 586
Query: 320 MLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKG 379
++ L++ G++ + ++LE +LS + II+ G Q G +E+A+ +L + G
Sbjct: 587 LVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSG 646
Query: 380 KTPTPNSWSIIAAGYADKNNMEKAFECMK 408
+P +++++ GY + +++A E ++
Sbjct: 647 VSPNHVTYTVMVKGYVNNGKLDRALETVR 675
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/372 (19%), Positives = 155/372 (41%), Gaps = 31/372 (8%)
Query: 47 GDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHD 106
G DV+ + L + +G + E+ +I + + + AL + E + + + H
Sbjct: 490 GKADVA-SAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHS 548
Query: 107 HAVQLDLIGKVRGLESAETYFNSLNDEDKVDKL--YGALLNCYVREGLVDESLSLMQKMK 164
V LD++ K ++ +N V + Y L++ +R G + S +++ MK
Sbjct: 549 LNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMK 608
Query: 165 EMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELS 224
G + Y I+ G+ E+ +L M+++GV P++ +Y + + Y +L
Sbjct: 609 LSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLD 668
Query: 225 SMENVLQEMESQSHISMDWGTYSTVANYYIIA--GL--KEKAIIYLKKCEDIVSKSKDAL 280
++ M + + ++ YS++ ++++ G+ E++ + DI + D
Sbjct: 669 RALETVRAMVERGY-ELNDRIYSSLLQGFVLSQKGIDNSEESTV-----SDIALRETDPE 722
Query: 281 GYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEW 340
N LIS LG C L I ++ L K G +E+ +++
Sbjct: 723 CINELISVVEQLGG--------------CISGL---CIFLVTRLCKEGRTDESNDLVQNV 765
Query: 341 ELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNM 400
L + + +II+ Y K K ++ ++K G P+ S+ ++ G + +
Sbjct: 766 -LERGVFLEKAMDIIMESYCSKKKHTKCMELITLVLKSGFVPSFKSFCLVIQGLKKEGDA 824
Query: 401 EKAFECMKEALA 412
E+A E + E L
Sbjct: 825 ERARELVMELLT 836
Score = 36.2 bits (82), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/127 (19%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 353 NIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412
+I++ G + G +E+A + ++ +KG P+ +++++ D+ ++KAF E +
Sbjct: 270 SILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIP 329
Query: 413 VHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQKRNM-----YHALTEAH 467
+ +P + ++D L + +EE + V+ R Y+AL +
Sbjct: 330 -----RGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKM---VKDRIFPSVITYNALINGY 381
Query: 468 IRSGQEV 474
+ G+ V
Sbjct: 382 CKDGRVV 388
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/357 (22%), Positives = 159/357 (44%), Gaps = 34/357 (9%)
Query: 70 LELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNS 129
++ R+ + K++ L + + M +G+A +++ ++ ++ + R L A F++
Sbjct: 73 IDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLA---FSA 129
Query: 130 LNDEDKVDKL--------YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGI--- 178
+ K+ KL + L+N EG V E+L L+ +M EMG + + N +
Sbjct: 130 MG---KIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNG 186
Query: 179 MCLYTNTGQHEKIPDVLL---DMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMES 235
+CL + K+ D +L M E G P+ +Y + + + +L++ME
Sbjct: 187 LCL------NGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKME- 239
Query: 236 QSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNK 295
+ I +D YS + + G + A + E I D + Y LI + G
Sbjct: 240 ERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEME-IKGFKADIIIYTTLIRGFCYAGRW 298
Query: 296 DEMMKFWGLQKIKCKKQLNRDYI---TMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVP 352
D+ K L + K+++ D + ++ VK G+L EAE++ +E D
Sbjct: 299 DDGAK---LLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTY 355
Query: 353 NIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKE 409
++ G+ ++ ++KA+ +L +V KG P +++I+ GY N ++ E ++
Sbjct: 356 TSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRK 412
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 138/308 (44%), Gaps = 21/308 (6%)
Query: 142 ALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKEN 201
AL+N G V +++ L+ +M E G + + Y ++ + +GQ ++L M+E
Sbjct: 182 ALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEER 241
Query: 202 GVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEK 261
+ D Y I I+ L + N+ EME + D Y+T+ + AG +
Sbjct: 242 KIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG-FKADIIIYTTLIRGFCYAGRWDD 300
Query: 262 AIIYLKKCEDIVSK--SKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRD--- 316
L+ D++ + + D + ++ LI + G E + L K ++ ++ D
Sbjct: 301 GAKLLR---DMIKRKITPDVVAFSALIDCFVKEGKLREAEE---LHKEMIQRGISPDTVT 354
Query: 317 YITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIV 376
Y +++ K +L++A ML+ + R NI++ GY + +I+ + +++
Sbjct: 355 YTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMS 414
Query: 377 KKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVS--SILDWL 434
+G +++ + G+ + +E A E +E ++ R +P +VS +LD L
Sbjct: 415 LRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVS-------RRVRPDIVSYKILLDGL 467
Query: 435 GDNRDVEE 442
DN + E+
Sbjct: 468 CDNGEPEK 475
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 142/308 (46%), Gaps = 25/308 (8%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
+ AL++C+V+EG + E+ L ++M + G + Y ++ + Q +K +L M
Sbjct: 320 FSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMV 379
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLK 259
G P+ ++ I IN Y + + + ++M + ++ D TY+T+ + G
Sbjct: 380 SKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVA-DTVTYNTLIQGFCELGKL 438
Query: 260 EKAIIYLKKCEDIVSK--SKDALGYNHLISHYASLGNKDEMMKFWGLQKI-KCKKQLNRD 316
E A +++VS+ D + Y L+ G ++ ++ + +KI K K +L+
Sbjct: 439 EVAKELF---QEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIF--EKIEKSKMELDIG 493
Query: 317 YITMLGSLVKIGELEEAEKMLEEWELSCYC------YDFRVPNIILLGYSQKGMIEKADA 370
++ I + A K+ + W+L C D + NI++ G +KG + +AD
Sbjct: 494 IYNII-----IHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADL 548
Query: 371 VLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSI 430
+ +++ + G +P +++I+ + + + K+ + ++E + + S V +
Sbjct: 549 LFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEI-----KRCGFSVDASTVKMV 603
Query: 431 LDWLGDNR 438
+D L D R
Sbjct: 604 VDMLSDGR 611
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 113/267 (42%), Gaps = 38/267 (14%)
Query: 138 KLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLD 197
+ + L+N Y + L+D+ L L +KM G + YN ++ + G+ E ++ +
Sbjct: 388 RTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQE 447
Query: 198 MKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAG 257
M V PD SY+I ++ E + +++E +S + +D G Y+ II G
Sbjct: 448 MVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIE-KSKMELDIGIYNI-----IIHG 501
Query: 258 LKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDY 317
+ C SK DA + SL +K K + Y
Sbjct: 502 M----------CN--ASKVDDAWDL------FCSL-------------PLKGVKPDVKTY 530
Query: 318 ITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVK 377
M+G L K G L EA+ + + E + + NI++ + +G K+ +++EI +
Sbjct: 531 NIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKR 590
Query: 378 KGKTPTPNSWSIIAAGYADKNNMEKAF 404
G + ++ ++ +D ++K+F
Sbjct: 591 CGFSVDASTVKMVVDMLSD-GRLKKSF 616
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/266 (19%), Positives = 105/266 (39%), Gaps = 37/266 (13%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
Y +++ ++G +D + +L +M+ G + Y ++ + G+ + +L DM
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLK 259
+ + PD ++ I+ + +L E + +EM Q IS D TY+++ + +
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEM-IQRGISPDTVTYTSLIDGFCKENQL 368
Query: 260 EKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYIT 319
+KA NH++ S G + F L CK L
Sbjct: 369 DKA--------------------NHMLDLMVSKGCGPNIRTFNILINGYCKANL------ 402
Query: 320 MLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKG 379
+++ ++ + L D N ++ G+ + G +E A + +E+V +
Sbjct: 403 ----------IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRR 452
Query: 380 KTPTPNSWSIIAAGYADKNNMEKAFE 405
P S+ I+ G D EKA E
Sbjct: 453 VRPDIVSYKILLDGLCDNGEPEKALE 478
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/333 (21%), Positives = 144/333 (43%), Gaps = 44/333 (13%)
Query: 139 LYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDM 198
+Y L+ +++ +++ ++++MKE G YN ++ + + ++ L++M
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEM 513
Query: 199 KENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGL 258
ENG+ P+ F+Y I+ Y SE +S + ++EM + N + GL
Sbjct: 514 VENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE----------CGVLPNKVLCTGL 563
Query: 259 KEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYI 318
+ Y KK + I + S Y ++ LG+ + Y
Sbjct: 564 INE---YCKKGKVIEACS----AYRSMVDQ-GILGDA-------------------KTYT 596
Query: 319 TMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKK 378
++ L K ++++AE++ E D +++ G+S+ G ++KA ++ E+V++
Sbjct: 597 VLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE 656
Query: 379 GKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNR 438
G TP ++++ G+ +EKA E + E ++V K P +I+D +
Sbjct: 657 GLTPNVIIYNMLLGGFCRSGEIEKAKELLDE-MSV----KGLHPNAVTYCTIIDGYCKSG 711
Query: 439 DVEEVEAFVSSLKIK--VQKRNMYHALTEAHIR 469
D+ E +K+K V +Y L + R
Sbjct: 712 DLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/394 (19%), Positives = 163/394 (41%), Gaps = 18/394 (4%)
Query: 95 MSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKL--YGALLNCYVREGL 152
M QG+ + V ++ + K ++ AE F + + + YG L+N + + G
Sbjct: 583 MVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGN 642
Query: 153 VDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRI 212
+ ++ S+ +M E G + + YN ++ + +G+ EK ++L +M G+ P+ +Y
Sbjct: 643 MQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCT 702
Query: 213 CINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDI 272
I+ Y +L+ + EM+ + + D Y+T+ + E+AI +
Sbjct: 703 IIDGYCKSGDLAEAFRLFDEMKLKGLVP-DSFVYTTLVDGCCRLNDVERAITIFGTNKKG 761
Query: 273 VSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKI------KCKKQLNRDYITMLGSLVK 326
+ S +N LI+ G + +K L ++ + K + Y M+ L K
Sbjct: 762 CASSTAP--FNALINWVFKFGKTE--LKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCK 817
Query: 327 IGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNS 386
G LE A+++ + + + +L GY + G + V E + G P
Sbjct: 818 EGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIM 877
Query: 387 WSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAF 446
+S+I + + KA + + A + + + S ++L ++E E
Sbjct: 878 YSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKV 937
Query: 447 VSSLKIKVQ----KRNMYHALTEAHIRSGQEVDG 476
+ ++ +++Q + + E+ I S Q V+
Sbjct: 938 MENM-VRLQYIPDSATVIELINESCISSNQRVEA 970
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/346 (18%), Positives = 144/346 (41%), Gaps = 7/346 (2%)
Query: 30 AVKPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHAL 89
+ P + + GD D + ++ + + G + + + +I+ RF A+
Sbjct: 414 VISPYTYGTVVKGMCSSGDLDGAYN-IVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAM 472
Query: 90 QVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSL--NDEDKVDKLYGALLNCY 147
+V + M QG+A + + + + K + ++ A ++ + N YGA ++ Y
Sbjct: 473 RVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGY 532
Query: 148 VREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDN 207
+ + +++M+E G + + G++ Y G+ + M + G+ D
Sbjct: 533 IEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDA 592
Query: 208 FSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKA-IIYL 266
+Y + +N ++ E + +EM + I+ D +Y + N + G +KA I+
Sbjct: 593 KTYTVLMNGLFKNDKVDDAEEIFREMRGKG-IAPDVFSYGVLINGFSKLGNMQKASSIFD 651
Query: 267 KKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVK 326
+ E+ + + + YN L+ + G ++ + +K Y T++ K
Sbjct: 652 EMVEE--GLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCK 709
Query: 327 IGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVL 372
G+L EA ++ +E +L D V ++ G + +E+A +
Sbjct: 710 SGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF 755
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 96/422 (22%), Positives = 185/422 (43%), Gaps = 31/422 (7%)
Query: 81 SRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKV--DK 138
S ++ + AL V E G+ + + ++ L+ + K +E AE + V +
Sbjct: 331 SNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEV 390
Query: 139 LYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDM 198
+Y +++ Y R+G + + ++ M++ G L YN ++ + G+ E + M
Sbjct: 391 IYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKM 450
Query: 199 KENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGL 258
K GV P +Y I I YG + E ++L+EME + + +Y T+ N
Sbjct: 451 KLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMP-NVVSYGTLINCLCKGSK 509
Query: 259 KEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNR-DY 317
+A I + ED K + YN LI S G ++ +F + +K +LN Y
Sbjct: 510 LLEAQIVKRDMEDRGVSPKVRI-YNMLIDGCCSKGKIEDAFRFSK-EMLKKGIELNLVTY 567
Query: 318 ITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVK 377
T++ L G+L EAE +L E D N ++ GY G +++ A+ +E+ +
Sbjct: 568 NTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKR 627
Query: 378 KGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEE---NKFWRPKPSLVSSILDWL 434
G PT ++ ++ + C KE + + E +P + + +L
Sbjct: 628 SGIKPTLKTYHLLIS------------LCTKEGIELTERLFGEMSLKPDLLVYNGVLHCY 675
Query: 435 GDNRDVEEVEAFVSSLKIKVQK-----RNMYHALTEAHIRSGQ--EVDGLLESMKADDID 487
+ D+E +AF + K ++K + Y++L ++ G+ EV L++ M A +++
Sbjct: 676 AVHGDME--KAF-NLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREME 732
Query: 488 ED 489
+
Sbjct: 733 PE 734
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 130/297 (43%), Gaps = 18/297 (6%)
Query: 103 SVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKL--YGALLNCYVREGLVDESLSLM 160
SV + V +D + K + + AE F+ + + L Y L++ Y + G ++S +
Sbjct: 213 SVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVR 272
Query: 161 QKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGAR 220
++MK S + +N ++ G E +VL +MK+ G PD F++ I + Y +
Sbjct: 273 ERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSN 332
Query: 221 SELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKS---- 276
+ + V E S + M+ T S + N G EKA E+I+ +
Sbjct: 333 EKAEAALGV-YETAVDSGVKMNAYTCSILLNALCKEGKIEKA-------EEILGREMAKG 384
Query: 277 --KDALGYNHLISHYASLGN-KDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEA 333
+ + YN +I Y G+ MK ++K K + Y ++ ++GE+E A
Sbjct: 385 LVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPD-HLAYNCLIRRFCELGEMENA 443
Query: 334 EKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSII 390
EK + + +L NI++ GY +K +K +LKE+ G P S+ +
Sbjct: 444 EKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTL 500
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 78/371 (21%), Positives = 147/371 (39%), Gaps = 45/371 (12%)
Query: 79 LRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLE-SAETYFNSLNDEDKVD 137
L K A + + +G+ S + LD + K + + + N L + +
Sbjct: 119 LNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPS 178
Query: 138 K-LYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGI---MCLYTNTGQHEKIPD 193
K +YG + V+ V + L L +MK + S YN + +C E++ D
Sbjct: 179 KFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFD 238
Query: 194 VLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYY 253
+L + + P +Y I+ Y V + M++ HI T++T+
Sbjct: 239 EMLARR---LLPSLITYNTLIDGYCKAGNPEKSFKVRERMKAD-HIEPSLITFNTLLKGL 294
Query: 254 IIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFW------GLQ-- 305
AG+ E A LK+ +D+ DA ++ L Y+S + + + G++
Sbjct: 295 FKAGMVEDAENVLKEMKDL-GFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMN 353
Query: 306 ---------------KI-KCKKQLNRD-----------YITMLGSLVKIGELEEAEKMLE 338
KI K ++ L R+ Y TM+ + G+L A +E
Sbjct: 354 AYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIE 413
Query: 339 EWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKN 398
E D N ++ + + G +E A+ + ++ KG +P+ +++I+ GY K
Sbjct: 414 AMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKY 473
Query: 399 NMEKAFECMKE 409
+K F+ +KE
Sbjct: 474 EFDKCFDILKE 484
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 125/281 (44%), Gaps = 26/281 (9%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
Y AL+N + REGL +++ + ++++E G YN +M Y+ G ++ M+
Sbjct: 302 YTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQ 361
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLK 259
G PD SY I +++YG S E V +EM+ G T+ ++ ++
Sbjct: 362 HMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKR-------LGIAPTMKSHMLLLSAY 414
Query: 260 EKAIIYLKKCEDIVSK------SKDALGYNHLISHYASLGNKDEMMKFWG-LQKIKCKKQ 312
KA + KCE IV + D N +++ Y LG +M K ++ C
Sbjct: 415 SKARD-VTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTAD 473
Query: 313 LNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNII-----LLGYSQKGMIEK 367
++ Y ++ K G LE E++ E + +FR P+++ + YS+K + K
Sbjct: 474 IS-TYNILINIYGKAGFLERIEELFVELKEK----NFR-PDVVTWTSRIGAYSRKKLYVK 527
Query: 368 ADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMK 408
V +E++ G P + ++ + + + +E+ ++
Sbjct: 528 CLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLR 568
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 69/179 (38%), Gaps = 40/179 (22%)
Query: 121 ESAETYFNSLNDEDKVDK---LYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNG 177
E AE F L ED ++ +Y AL+ Y R G + + M+ MG +YN
Sbjct: 316 EKAEEIFEQLQ-EDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNI 374
Query: 178 IMCLYTNTGQHE-----------------------------------KIPDVLLDMKENG 202
++ Y G H K ++ +M ENG
Sbjct: 375 MVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENG 434
Query: 203 VPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEK 261
V PD F +N YG + + ME +L EME+ + D TY+ + N Y AG E+
Sbjct: 435 VEPDTFVLNSMLNLYGRLGQFTKMEKILAEMEN-GPCTADISTYNILINIYGKAGFLER 492
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 72/377 (19%), Positives = 142/377 (37%), Gaps = 58/377 (15%)
Query: 120 LESAETYFNSLNDEDKVDKLYGALL-NCYV-----REGLVDESLSLMQKMKEMGSFGSAL 173
+E AE + + K G + N Y+ R+G +E++ + Q+MK +
Sbjct: 206 IERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTE 265
Query: 174 NYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEM 233
YN ++ LY + + +M+ + P+ +Y +N++ E + +++
Sbjct: 266 TYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQL 325
Query: 234 ESQSHISMDWGTYSTVANYYIIAGLKEKA--IIYLKK---CEDIVSKSKDALGYNHLISH 288
+ + + D Y+ + Y AG A I L + CE D YN ++
Sbjct: 326 Q-EDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCE------PDRASYNIMVDA 378
Query: 289 YASLGNKD------EMMKFWGLQK------------------IKCK---KQLNRDYI--- 318
Y G E MK G+ KC+ K+++ + +
Sbjct: 379 YGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPD 438
Query: 319 -----TMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLK 373
+ML ++G+ + EK+L E E D NI++ Y + G +E+ + +
Sbjct: 439 TFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFV 498
Query: 374 EIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDW 433
E+ +K P +W+ Y+ K K E +E + + P +L
Sbjct: 499 ELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMI-----DSGCAPDGGTAKVLLSA 553
Query: 434 LGDNRDVEEVEAFVSSL 450
VE+V + + ++
Sbjct: 554 CSSEEQVEQVTSVLRTM 570
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 119/295 (40%), Gaps = 52/295 (17%)
Query: 198 MKENGVPPDNFSYRICINSYGARSELSSMENV-LQEMESQSHISMDWGTYSTVANYYIIA 256
++++ PD + + I++YG + + E++ +Q +ES+ + D TY+ + Y +A
Sbjct: 146 LRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTED--TYALLIKAYCMA 203
Query: 257 GLKEKAIIYLKKCED--IVSKSKDALGYNHLISHYASL-GNKDE---------------- 297
GL E+A + L + ++ + K+ YN I GN +E
Sbjct: 204 GLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPT 263
Query: 298 ------MMKFWG--------------LQKIKCKKQLNRDYITMLGSLVKIGELEEAEKML 337
M+ +G ++ +CK + Y ++ + + G E+AE++
Sbjct: 264 TETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNIC-TYTALVNAFAREGLCEKAEEIF 322
Query: 338 EEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADK 397
E+ + D V N ++ YS+ G A + + G P S++I+ Y
Sbjct: 323 EQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRA 382
Query: 398 NNMEKAFECMKEALAVHEENKFWRPKPSLVSS--ILDWLGDNRDVEEVEAFVSSL 450
+A AV EE K P++ S +L RDV + EA V +
Sbjct: 383 G-------LHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEM 430
Score = 32.7 bits (73), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/101 (18%), Positives = 47/101 (46%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
Y L+N Y + G ++ L ++KE + + + Y+ + K +V +M
Sbjct: 477 YNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMI 536
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHIS 240
++G PD + ++ +++ + ++ + +VL+ M +S
Sbjct: 537 DSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKGVTVS 577
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 142/320 (44%), Gaps = 23/320 (7%)
Query: 176 NGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMES 235
N ++ + G E++ V MKENG+ P ++Y +N + + S E V + MES
Sbjct: 191 NALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMES 250
Query: 236 QSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNK 295
I D TY+T+ Y AG +KA ++K D+ ++ +A ++ A +
Sbjct: 251 -GRIKPDIVTYNTMIKGYCKAGQTQKA---MEKLRDMETRGHEADKITYMTMIQACYADS 306
Query: 296 D--EMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPN 353
D + + K + + ++G L K G+L E + E + +
Sbjct: 307 DFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYT 366
Query: 354 IILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFE----CMKE 409
+++ GY++ G +E A +L ++ +G P ++S++ G +E+A + C +
Sbjct: 367 VLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFD 426
Query: 410 ALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQKRN--MYHALTEAH 467
LA++ + F+ SS++D LG V+E E + K R+ Y+AL +A
Sbjct: 427 GLAIN--SMFY-------SSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAF 477
Query: 468 I--RSGQEVDGLLESMKADD 485
R E L + M+ ++
Sbjct: 478 TKHRKVDEAIALFKRMEEEE 497
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 127/306 (41%), Gaps = 46/306 (15%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
Y L+N V VD + + + M+ + YN ++ Y GQ +K + L DM+
Sbjct: 225 YNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDME 284
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQS------HISMDWG--------- 244
G D +Y I + A S+ S + QEM+ + S+ G
Sbjct: 285 TRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLN 344
Query: 245 -------------------TYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHL 285
Y+ + + Y +G E AI L + D K D + Y+ +
Sbjct: 345 EGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP-DVVTYSVV 403
Query: 286 ISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEW-ELSC 344
++ G +E + ++ + + Y +++ L K G ++EAE++ EE E C
Sbjct: 404 VNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGC 463
Query: 345 ----YCYDFRVPNIILLGYSQKGMIEKADAVLKEI-VKKGKTPTPNSWSIIAAGYADKNN 399
YCY N ++ +++ +++A A+ K + ++G T +++I+ +G ++
Sbjct: 464 TRDSYCY-----NALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHR 518
Query: 400 MEKAFE 405
E+A +
Sbjct: 519 NEEALK 524
Score = 39.7 bits (91), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 88/191 (46%), Gaps = 19/191 (9%)
Query: 56 VLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIG 115
+L + + EG K + V+ L R + AL GLA + ++ +D +G
Sbjct: 384 LLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLG 443
Query: 116 KVRGLESAETYFNSLNDE--DKVDKLYGALLNCYVREGLVDESLSLMQKM-KEMGSFGSA 172
K ++ AE F ++++ + Y AL++ + + VDE+++L ++M +E G +
Sbjct: 444 KAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTV 503
Query: 173 LNYNGIMCLYTNTGQHE---KIPDVLLDMKENGVPPDNFSYR-----ICINSYGARS--- 221
Y ++ ++E K+ D+++D G+ P +R +C++ AR+
Sbjct: 504 YTYTILLSGMFKEHRNEEALKLWDMMID---KGITPTAACFRALSTGLCLSGKVARACKI 560
Query: 222 --ELSSMENVL 230
EL+ M +L
Sbjct: 561 LDELAPMGVIL 571
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 78/362 (21%), Positives = 156/362 (43%), Gaps = 19/362 (5%)
Query: 56 VLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIG 115
+L++ L G VI L R A ++ M +G A + ++ +
Sbjct: 274 LLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLC 333
Query: 116 KVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKM-KEMGSFGSALN 174
K+ +++A+ F + + V ++ L++ +V G +D++ +++ M G
Sbjct: 334 KIGRVDAAKDLFYRIPKPEIV--IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCT 391
Query: 175 YNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEME 234
YN ++ Y G +VL DM+ G P+ +SY I ++ + ++ NVL EM
Sbjct: 392 YNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMS 451
Query: 235 SQSHISMDWGTYSTVANYYIIAGLKEKAIIYL----KKCEDIVSKSKDALGYNHLISHYA 290
+ G ++ + + E I+ K C+ D +N LIS
Sbjct: 452 ADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCK------PDVYTFNSLIS--- 502
Query: 291 SLGNKDEM-MKFWGLQKIKCKKQL--NRDYITMLGSLVKIGELEEAEKMLEEWELSCYCY 347
L DE+ W L+ + + + Y T++ + ++ GE++EA K++ E
Sbjct: 503 GLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPL 562
Query: 348 DFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECM 407
D N ++ G + G ++KA ++ +++++ G P+ S +I+ G +E+A E
Sbjct: 563 DEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQ 622
Query: 408 KE 409
KE
Sbjct: 623 KE 624
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 139/309 (44%), Gaps = 35/309 (11%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
Y +L+ Y +EGLV +L ++ M+ G + +Y ++ + G+ ++ +VL +M
Sbjct: 392 YNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMS 451
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLK 259
+G+ P+ + I+++ + + +EM + D T+++ +I+GL
Sbjct: 452 ADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG-CKPDVYTFNS-----LISGLC 505
Query: 260 E----KAIIYLKKCEDIVSKS--KDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQL 313
E K ++L + D++S+ + + YN LI+ + G E K +
Sbjct: 506 EVDEIKHALWLLR--DMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLD 563
Query: 314 NRDYITMLGSLVKIGELEEA----EKMLEEWE----LSCYCYDFRVPNIILLGYSQKGMI 365
Y +++ L + GE+++A EKML + +SC NI++ G + GM+
Sbjct: 564 EITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISC--------NILINGLCRSGMV 615
Query: 366 EKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPS 425
E+A KE+V +G TP +++ + G +E ++ A + P
Sbjct: 616 EEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQA-----EGIPPDTV 670
Query: 426 LVSSILDWL 434
++++ WL
Sbjct: 671 TFNTLMSWL 679
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/334 (19%), Positives = 143/334 (42%), Gaps = 25/334 (7%)
Query: 88 ALQVSEWMSGQ-GLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDK--LYGALL 144
++++ W Q G S + V + +G ++ + + DE V K L+ +++
Sbjct: 94 SMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIM 153
Query: 145 NCYVREGLVDESLSLMQKMKEMGSFGSAL-NYNGIMCLYTNTGQHEKIPDVLLDMKENGV 203
Y + G ++ LM +M+ + S +YN ++ + + H+ +V DM +
Sbjct: 154 RDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKI 213
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAI 263
PP F++ + + ++ A +E+ S ++L++M + + Y T+ + +A+
Sbjct: 214 PPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVP-NSVIYQTLIHSLSKCNRVNEAL 272
Query: 264 IYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGS 323
L++ ++ DA +N +I +E K I+ + Y ++
Sbjct: 273 QLLEE-MFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNG 331
Query: 324 LVKIGELEEAEKMLEEWELSCYCYDFRVP-------NIILLGYSQKGMIEKADAVLKEIV 376
L KIG ++ A+ + +R+P N ++ G+ G ++ A AVL ++V
Sbjct: 332 LCKIGRVDAAKDLF-----------YRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMV 380
Query: 377 KK-GKTPTPNSWSIIAAGYADKNNMEKAFECMKE 409
G P +++ + GY + + A E + +
Sbjct: 381 TSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHD 414
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 87/206 (42%), Gaps = 3/206 (1%)
Query: 63 EGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLES 122
+G K +I L KHAL + M +G+ + + ++ + ++
Sbjct: 488 KGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKE 547
Query: 123 AETYFNSLNDE-DKVDKL-YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMC 180
A N + + +D++ Y +L+ R G VD++ SL +KM G S ++ N ++
Sbjct: 548 ARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILIN 607
Query: 181 LYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHIS 240
+G E+ + +M G PD ++ IN + + ++++++ I
Sbjct: 608 GLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEG-IP 666
Query: 241 MDWGTYSTVANYYIIAGLKEKAIIYL 266
D T++T+ ++ G A + L
Sbjct: 667 PDTVTFNTLMSWLCKGGFVYDACLLL 692
>sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020
OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1
Length = 842
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 81/381 (21%), Positives = 155/381 (40%), Gaps = 45/381 (11%)
Query: 70 LELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNS 129
L++ + R+ + + F E + + S + + +D GK ++ A F
Sbjct: 264 LQMYKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKR 323
Query: 130 LNDEDKVDKL--YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQ 187
+ +E V + +++ Y G + E SLM+ MK + YN ++ L+T
Sbjct: 324 MLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMK-LHCAPDTRTYNILISLHTKNND 382
Query: 188 HEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYS 247
E+ +MK++G+ PD SYR + ++ R + E ++ EM+ ++ +D T S
Sbjct: 383 IERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAEMD-DDNVEIDEYTQS 441
Query: 248 TVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDE---------- 297
+ Y+ A + EK+ + K+ V+ + + GY+ I Y G E
Sbjct: 442 ALTRMYVEAEMLEKSWSWFKRFH--VAGNMSSEGYSANIDAYGERGYLSEAERVFICCQE 499
Query: 298 -----------MMKFWGLQKIKCKKQLNR--------------DYITMLGSLVKIGELEE 332
M+K +G+ K C+K Y T++ L +
Sbjct: 500 VNKRTVIEYNVMIKAYGISK-SCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPHK 558
Query: 333 AEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAA 392
LE+ + Y D ++ + + G + A+ V KE+V+ P + ++
Sbjct: 559 GRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLIN 618
Query: 393 GYADKNNMEKAF---ECMKEA 410
+AD N+++A E MKEA
Sbjct: 619 AFADTGNVQQAMSYVEAMKEA 639
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 8/205 (3%)
Query: 139 LYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTG---QHEKIPDVL 195
+YG L+N + G V +++S ++ MKE G G+++ YN ++ LYT G + E I L
Sbjct: 612 VYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKL 671
Query: 196 LDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYII 255
L PD ++ IN Y RS + E + M+ + + T++ + Y
Sbjct: 672 LQSCNKTQYPDVYTSNCMINLYSERSMVRKAEAIFDSMKQRGE--ANEFTFAMMLCMYKK 729
Query: 256 AGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNR 315
G E+A K+ ++ + D L YN ++ +A G E ++ + + + Q +
Sbjct: 730 NGRFEEATQIAKQMREMKILT-DPLSYNSVLGLFALDGRFKEAVETFK-EMVSSGIQPDD 787
Query: 316 DYITMLGS-LVKIGELEEAEKMLEE 339
LG+ L+K+G ++A + +EE
Sbjct: 788 STFKSLGTILMKLGMSKKAVRKIEE 812
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 129/311 (41%), Gaps = 13/311 (4%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
Y A ++ Y G + E+ + +E+ + + YN ++ Y + EK ++ M
Sbjct: 474 YSANIDAYGERGYLSEAERVFICCQEVNK-RTVIEYNVMIKAYGISKSCEKACELFESMM 532
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAG-L 258
GV PD +Y + + L++M ++S D Y V + ++ G L
Sbjct: 533 SYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVS-DCIPYCAVISSFVKLGQL 591
Query: 259 KEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYI 318
+Y + E + D + Y LI+ +A GN + M + K + Y
Sbjct: 592 NMAEEVYKEMVEYNIEP--DVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYN 649
Query: 319 TMLGSLVKIGELEEAEKMLEEWELSC---YCYDFRVPNIILLGYSQKGMIEKADAVLKEI 375
+++ K+G L+EAE + + SC D N ++ YS++ M+ KA+A+ +
Sbjct: 650 SLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSNCMINLYSERSMVRKAEAIFDSM 709
Query: 376 VKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLG 435
++G+ +++++ Y E+A + K+ E K S S + +
Sbjct: 710 KQRGEA-NEFTFAMMLCMYKKNGRFEEATQIAKQM----REMKILTDPLSYNSVLGLFAL 764
Query: 436 DNRDVEEVEAF 446
D R E VE F
Sbjct: 765 DGRFKEAVETF 775
Score = 39.3 bits (90), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 98/258 (37%), Gaps = 56/258 (21%)
Query: 245 TYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGL 304
TY T+ + Y GLK A+ +L K I + DE+ L
Sbjct: 224 TYGTLIDVYSKGGLKVHALCWLGKMSKIGMQP-------------------DEVTTGIVL 264
Query: 305 QKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWEL------SCYCYDFRVPNIILLG 358
Q K K E ++AE+ ++W S C N ++
Sbjct: 265 QMYK-----------------KAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDT 307
Query: 359 YSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENK 418
Y + G I++A K ++++G PT +++ + Y + + + MK + +H
Sbjct: 308 YGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMK-TMKLH---- 362
Query: 419 FWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLK------IKVQKRNMYHALTEAHIRSGQ 472
P + ++ N D+E A+ +K V R + +A + H+ +
Sbjct: 363 -CAPDTRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMV--E 419
Query: 473 EVDGLLESMKADDIDEDK 490
E +GL+ M D+++ D+
Sbjct: 420 EAEGLIAEMDDDNVEIDE 437
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/332 (19%), Positives = 146/332 (43%), Gaps = 4/332 (1%)
Query: 86 KHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKL--YGAL 143
KHA+++ + M +G V+ + + + K+ ++ A + + D Y L
Sbjct: 312 KHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTL 371
Query: 144 LNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGV 203
++ +E V+E+ L + + G +N ++ T H ++ +M+ G
Sbjct: 372 ISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGC 431
Query: 204 PPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAI 263
PD F+Y + I+S ++ +L N+L++ME S + TY+T+ + + A +A
Sbjct: 432 EPDEFTYNMLIDSLCSKGKLDEALNMLKQME-LSGCARSVITYNTLIDGFCKANKTREAE 490
Query: 264 IYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGS 323
+ E + S++++ YN LI ++ + ++ +K Y ++L
Sbjct: 491 EIFDEME-VHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTH 549
Query: 324 LVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPT 383
+ G++++A +++ + D ++ G + G +E A +L+ I KG T
Sbjct: 550 FCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLT 609
Query: 384 PNSWSIIAAGYADKNNMEKAFECMKEALAVHE 415
P++++ + G K +A +E L +E
Sbjct: 610 PHAYNPVIQGLFRKRKTTEAINLFREMLEQNE 641
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/324 (19%), Positives = 133/324 (41%), Gaps = 15/324 (4%)
Query: 88 ALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKV---DKLYGALL 144
AL++ E M G ++S V + K +E A + ++++D + L+
Sbjct: 243 ALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLV 302
Query: 145 NCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVP 204
N + G V ++ +M M + G YN ++ G+ ++ +VL M
Sbjct: 303 NGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCS 362
Query: 205 PDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANY-YIIAG--LKEK 261
P+ +Y I++ EN ++E + + G V + +I G L
Sbjct: 363 PNTVTYNTLISTL-------CKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRN 415
Query: 262 AIIYLKKCEDIVSKS--KDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYIT 319
+ ++ E++ SK D YN LI S G DE + ++ + Y T
Sbjct: 416 HRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNT 475
Query: 320 MLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKG 379
++ K + EAE++ +E E+ + N ++ G + +E A ++ +++ +G
Sbjct: 476 LIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEG 535
Query: 380 KTPTPNSWSIIAAGYADKNNMEKA 403
+ P +++ + + +++KA
Sbjct: 536 QKPDKYTYNSLLTHFCRGGDIKKA 559
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/363 (19%), Positives = 166/363 (45%), Gaps = 22/363 (6%)
Query: 137 DKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLL 196
+K + ++ Y+ EG +D +L + ++M E G S ++ N I+ + G+ E + +
Sbjct: 224 EKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQ 283
Query: 197 DMK-ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYII 255
+M ++G PD +++ +N + ++ M + + D TY++V +
Sbjct: 284 EMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGY-DPDVYTYNSVISGLCK 342
Query: 256 AGLKEKAIIYLKKCEDIVSK--SKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQL 313
G ++A+ L + ++++ S + + YN LIS +L ++++ + L ++ K +
Sbjct: 343 LGEVKEAVEVL---DQMITRDCSPNTVTYNTLIS---TLCKENQVEEATELARVLTSKGI 396
Query: 314 NRDYIT---MLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADA 370
D T ++ L A ++ EE D N+++ KG +++A
Sbjct: 397 LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456
Query: 371 VLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSI 430
+LK++ G + +++ + G+ N +A E E + VH ++ +++
Sbjct: 457 MLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDE-MEVHGVSR----NSVTYNTL 511
Query: 431 LDWLGDNRDVEEVEAFVSSLKIKVQKRN--MYHALTEAHIRSG--QEVDGLLESMKADDI 486
+D L +R VE+ + + ++ QK + Y++L R G ++ ++++M ++
Sbjct: 512 IDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGC 571
Query: 487 DED 489
+ D
Sbjct: 572 EPD 574
Score = 32.3 bits (72), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 43/221 (19%), Positives = 92/221 (41%), Gaps = 15/221 (6%)
Query: 196 LDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYII 255
L K+ P+ Y + G M+ +L++M+S S M T+ + Y
Sbjct: 72 LASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKS-SRCEMGTSTFLILIESYAQ 130
Query: 256 AGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEM-------MKFWGLQKIK 308
L+++ + + D D YN +++ GN ++ M WG+
Sbjct: 131 FELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVD-GNSLKLVEISHAKMSVWGI---- 185
Query: 309 CKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKA 368
K + ++ +L + +L A MLE+ D + ++ GY ++G ++ A
Sbjct: 186 --KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGA 243
Query: 369 DAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKE 409
+ +++V+ G + + S ++I G+ + +E A ++E
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQE 284
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 97/468 (20%), Positives = 196/468 (41%), Gaps = 31/468 (6%)
Query: 29 RAVKPVARNNLYSRISPLGDPDVSLTPVLDQW---VLEGQKISELELQRVIRQLRSRKRF 85
RA V+ +L R+S D+ L +D + V S ++ R++ + K++
Sbjct: 42 RASSSVSGGDLRERLSKTRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKY 101
Query: 86 KHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSL----NDEDKVDKLYG 141
+ + + M G+ ++ + ++ + A + + + D+V G
Sbjct: 102 DVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVT--IG 159
Query: 142 ALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKEN 201
+L+N + R V +++SL+ KM E+G + YN I+ T + D +++
Sbjct: 160 SLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK 219
Query: 202 GVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAG--LK 259
G+ P+ +Y +N S S +L +M + I+ + TYS + + ++ G L+
Sbjct: 220 GIRPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKKITPNVITYSALLDAFVKNGKVLE 278
Query: 260 EKAIIYLKKCEDIVSKS--KDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDY 317
K + E++V S D + Y+ LI+ DE + + L K Y
Sbjct: 279 AKELF-----EEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSY 333
Query: 318 ITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVK 377
T++ K +E+ K+ E + N ++ G+ Q G ++KA ++
Sbjct: 334 NTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF 393
Query: 378 KGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLV--SSILDWLG 435
G +P +++I+ G D +EK AL + E+ + +V ++++ +
Sbjct: 394 FGISPDIWTYNILLGGLCDNGELEK-------ALVIFEDMQKREMDLDIVTYTTVIRGMC 446
Query: 436 DNRDVEEVEAFVSSLKIKVQKRNMYHALTEAHIRSGQEVDGLLESMKA 483
VEE + SL +K K ++ +T + SG GLL ++A
Sbjct: 447 KTGKVEEAWSLFCSLSLKGLKPDI---VTYTTMMSGLCTKGLLHEVEA 491
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 112/247 (45%), Gaps = 16/247 (6%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGI---MCLYTNTGQHEKIPDVLL 196
Y ALL+ +V+ G V E+ L ++M M + Y+ + +CL+ + ++ D+
Sbjct: 263 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDL-- 320
Query: 197 DMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIA 256
M G D SY IN + + + +EM + +S + TY+T+ + A
Sbjct: 321 -MVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVS-NTVTYNTLIQGFFQA 378
Query: 257 GLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDE-MMKFWGLQKIKCKKQLNR 315
G +KA + + D S D YN L+ G ++ ++ F +QK ++++
Sbjct: 379 GDVDKAQEFFSQ-MDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQK----REMDL 433
Query: 316 D---YITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVL 372
D Y T++ + K G++EEA + L D ++ G KG++ + +A+
Sbjct: 434 DIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALY 493
Query: 373 KEIVKKG 379
++ ++G
Sbjct: 494 TKMKQEG 500
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 79/371 (21%), Positives = 155/371 (41%), Gaps = 37/371 (9%)
Query: 75 VIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED 134
++R L + K A++V + M + V + + ++ + G+ A + + D
Sbjct: 210 ILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRG 269
Query: 135 KVDKL--YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIP 192
+ Y L+N +EG +DE++ + M G + + +N I+ +TG+
Sbjct: 270 CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAE 329
Query: 193 DVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANY 252
+L DM G P ++ I IN + L ++L++M Q + +Y+ + +
Sbjct: 330 KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKM-PQHGCQPNSLSYNPLLHG 388
Query: 253 YIIAGLKEKAIIYLKK-----C-EDIVS------------KSKDA--------------- 279
+ ++AI YL++ C DIV+ K +DA
Sbjct: 389 FCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV 448
Query: 280 -LGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLE 338
+ YN +I A G + +K + K K Y +++G L + G+++EA K
Sbjct: 449 LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFH 508
Query: 339 EWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKN 398
E+E + N I+LG + ++A L ++ +G P S++I+ G A +
Sbjct: 509 EFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEG 568
Query: 399 NMEKAFECMKE 409
++A E + E
Sbjct: 569 MAKEALELLNE 579
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/381 (19%), Positives = 161/381 (42%), Gaps = 49/381 (12%)
Query: 148 VREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDN 207
VR G ++E ++ M G+ + ++ + G+ K +L ++ +G PD
Sbjct: 113 VRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDV 172
Query: 208 FSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLK 267
+Y + I+ Y E+++ +VL M +S D TY+T+ +G ++A+ L
Sbjct: 173 ITYNVMISGYCKAGEINNALSVLDRMS----VSPDVVTYNTILRSLCDSGKLKQAMEVLD 228
Query: 268 K-----C-EDIVS----------------------------KSKDALGYNHLISHYASLG 293
+ C D+++ + D + YN L++ G
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEG 288
Query: 294 NKDEMMKFWG-LQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVP 352
DE +KF + C+ + I +L S+ G +AEK+L + +
Sbjct: 289 RLDEAIKFLNDMPSSGCQPNVITHNI-ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTF 347
Query: 353 NIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412
NI++ +KG++ +A +L+++ + G P S++ + G+ + M++A E ++ ++
Sbjct: 348 NILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVS 407
Query: 413 VHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQKRNM--YHALTEAHIRS 470
+ P +++L L + VE+ ++ L K + Y+ + + ++
Sbjct: 408 -----RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKA 462
Query: 471 GQEVDG--LLESMKADDIDED 489
G+ LL+ M+A D+ D
Sbjct: 463 GKTGKAIKLLDEMRAKDLKPD 483
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 108/510 (21%), Positives = 191/510 (37%), Gaps = 94/510 (18%)
Query: 23 IFTRAYRAVKPVARNNLYSRISP---------LGDPDVSLTPVLDQWVLEGQKI--SELE 71
++ YR ++ V RN Y +SP LG + + + +G+K +
Sbjct: 141 LYGEMYRTIQEVVRNT-YVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSST 199
Query: 72 LQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGL---ESAETYFN 128
VI L + + +V M +G F D LI L +SA F+
Sbjct: 200 YNSVILMLMQEGQHEKVHEVYTEMCNEGDCFP--DTITYSALISSYEKLGRNDSAIRLFD 257
Query: 129 SLNDE--DKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTG 186
+ D +K+Y LL Y + G V+++L L ++MK G + Y ++ G
Sbjct: 258 EMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAG 317
Query: 187 QHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEM------------- 233
+ ++ DM +G+ PD +N G + + NV EM
Sbjct: 318 RVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYN 377
Query: 234 -------ESQSHIS--MDWG-------------TYSTVANYYIIAGLKEKAIIYLKK--- 268
ES++H+S W TYS + + Y EKA++ L++
Sbjct: 378 TVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDE 437
Query: 269 -----CEDIVSKSKDALG--------------------------YNHLISHYASLGNKDE 297
C +ALG Y +I H+ G E
Sbjct: 438 KGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSE 497
Query: 298 MMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILL 357
+ + K + Y ++ +VK G + EA +L + E + D NIIL
Sbjct: 498 AVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILN 557
Query: 358 GYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEEN 417
G+++ G+ +A + + I G P +++ + +A E+A M+E ++
Sbjct: 558 GFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREM-----KD 612
Query: 418 KFWRPKPSLVSSILDWLGD-NRDVEEVEAF 446
K + SSILD +G+ + + ++V +F
Sbjct: 613 KGFEYDAITYSSILDAVGNVDHEKDDVSSF 642
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 10/177 (5%)
Query: 278 DALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKML 337
D + Y+ LIS Y LG D ++ + K C + + Y T+LG K+G++E+A +
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLF 291
Query: 338 EEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADK 397
EE + + ++ G + G +++A K++++ G TP +
Sbjct: 292 EEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPD-------VVFLNNL 344
Query: 398 NNMEKAFECMKEALAVHEENKFWRPKPSLVS--SILDWLGDNR-DVEEVEAFVSSLK 451
N+ ++E V E WR P++VS +++ L +++ V EV ++ +K
Sbjct: 345 MNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMK 401
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 146/325 (44%), Gaps = 16/325 (4%)
Query: 83 KRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLND--EDKVDKLY 140
+ ++ L V + M +GL F + L + L A+ +F L + Y
Sbjct: 260 RSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTY 319
Query: 141 GALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKE 200
ALL + + G+ E+LS++++M+E ++ YN ++ Y G ++ V+ M +
Sbjct: 320 NALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTK 379
Query: 201 NGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKE 260
GV P+ +Y I++YG + + M+ + + TY+ V + + G K
Sbjct: 380 KGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVP-NTCTYNAVLS---LLGKKS 435
Query: 261 KAIIYLKKCEDIVSK--SKDALGYNHLISHYASLGNKDEMMKFWG--LQKIK-CKKQLNR 315
++ +K D+ S S + +N ++ A GNK M KF +++K C + +R
Sbjct: 436 RSNEMIKMLCDMKSNGCSPNRATWNTML---ALCGNKG-MDKFVNRVFREMKSCGFEPDR 491
Query: 316 D-YITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKE 374
D + T++ + + G +A KM E + + N +L ++KG + V+ +
Sbjct: 492 DTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISD 551
Query: 375 IVKKGKTPTPNSWSIIAAGYADKNN 399
+ KG PT S+S++ YA N
Sbjct: 552 MKSKGFKPTETSYSLMLQCYAKGGN 576
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 156/342 (45%), Gaps = 25/342 (7%)
Query: 71 ELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLD-----LIGKVRGLESAET 125
+L +++ L ++ A+ + EW L S + A++LD + ++ G ES +
Sbjct: 138 DLVSLVKGLDDSGHWERAVFLFEW-----LVLSSNSGALKLDHQVIEIFVRILGRESQYS 192
Query: 126 YFNSLNDEDKVD------KLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIM 179
L D+ + + Y +L+ Y R G ++++ L ++MKEMG + + YN I+
Sbjct: 193 VAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVIL 252
Query: 180 CLYTNTGQH-EKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSH 238
++ G+ KI VL +M+ G+ D F+ +++ L + E++S +
Sbjct: 253 DVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGY 312
Query: 239 ISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEM 298
TY+ + + AG+ +A+ LK+ E+ S D++ YN L++ Y G E
Sbjct: 313 -EPGTVTYNALLQVFGKAGVYTEALSVLKEMEE-NSCPADSVTYNELVAAYVRAGFSKEA 370
Query: 299 MKFWGLQKIKCKKQLNRD---YITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNII 355
G+ ++ KK + + Y T++ + K G+ +EA K+ + + + N +
Sbjct: 371 A---GVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAV 427
Query: 356 LLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADK 397
L +K + +L ++ G +P +W+ + A +K
Sbjct: 428 LSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNK 469
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 69/329 (20%), Positives = 136/329 (41%), Gaps = 54/329 (16%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
Y +++ Y + G DE+L L MKE G + YN ++ L + ++ +L DMK
Sbjct: 389 YTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMK 448
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYY------ 253
NG P+ ++ + G + + V +EM+S D T++T+ + Y
Sbjct: 449 SNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKS-CGFEPDRDTFNTLISAYGRCGSE 507
Query: 254 ----------IIAGLKEKAIIY------------LKKCEDIVSKSKDA------LGYNHL 285
AG Y + E+++S K Y+ +
Sbjct: 508 VDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLM 567
Query: 286 ISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYI------TMLGSLVKIGELEEAEKMLEE 339
+ YA GN + G+++I+ + + + + T+L + K L +E+
Sbjct: 568 LQCYAKGGN------YLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTL 621
Query: 340 WELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNN 399
++ Y D + N +L +++ M ++A+ +L+ I + G +P +++ + Y +
Sbjct: 622 FKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGE 681
Query: 400 MEKAFECMKEALAVHEENKFWRPKPSLVS 428
KA +E L E+++ KP LVS
Sbjct: 682 CWKA----EEILKTLEKSQL---KPDLVS 703
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 18/201 (8%)
Query: 116 KVRGLESAETYFNSLNDED-KVDK-LYGALLNCYVREGLVDESLSLMQKMKEMGSFGSAL 173
K R L +E F K D ++ ++L+ + R + D++ +++ ++E G +
Sbjct: 608 KCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLV 667
Query: 174 NYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEM 233
YN +M +Y G+ K ++L ++++ + PD SY I + R + +L EM
Sbjct: 668 TYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEM 727
Query: 234 ESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIV------SKSKDALGYNHLIS 287
++ I TY+T + Y G+ + ED++ + L + ++
Sbjct: 728 -TERGIRPCIFTYNTFVSGYTAMGM-------FAEIEDVIECMAKNDCRPNELTFKMVVD 779
Query: 288 HYASLGNKDEMMKFWGLQKIK 308
Y G E M F + KIK
Sbjct: 780 GYCRAGKYSEAMDF--VSKIK 798
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 112/277 (40%), Gaps = 52/277 (18%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
Y ALLN R+ G + S N V+ DMK
Sbjct: 529 YNALLNALARK----------------GDWRSGEN-------------------VISDMK 553
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLK 259
G P SY + + Y +E + ++ + I W T+ ++A K
Sbjct: 554 SKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIK-EGQIFPSWMLLRTL----LLANFK 608
Query: 260 EKAIIYLKKCEDIVSK---SKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRD 316
+A+ ++ + K D + +N ++S + D+ L+ I+ + L+ D
Sbjct: 609 CRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGI--LESIR-EDGLSPD 665
Query: 317 YIT---MLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLK 373
+T ++ V+ GE +AE++L+ E S D N ++ G+ ++G++++A +L
Sbjct: 666 LVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLS 725
Query: 374 EIVKKGKTPTPNSWSIIAAGYADKN---NMEKAFECM 407
E+ ++G P +++ +GY +E ECM
Sbjct: 726 EMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECM 762
>sp|Q9LMY5|PPR41_ARATH Putative pentatricopeptide repeat-containing protein At1g13630
OS=Arabidopsis thaliana GN=At1g13630 PE=2 SV=3
Length = 826
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/391 (20%), Positives = 170/391 (43%), Gaps = 18/391 (4%)
Query: 105 HDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKL--YGALLNCYVREGLVDESLSLMQK 162
H ++ +D + + + LE A + + +D + + ++++ Y + G VD + S
Sbjct: 230 HTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCT 289
Query: 163 MKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSE 222
+ + G S ++N ++ G + ++ DM ++GV PD+ +Y I +
Sbjct: 290 VLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGM 349
Query: 223 LSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKS---KDA 279
+S V+++M + +S D TY+ + G + ++ LK D++S+
Sbjct: 350 ISGAWEVIRDMLDKG-LSPDVITYTILLCGQCQLGNIDMGLVLLK---DMLSRGFELNSI 405
Query: 280 LGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEE 339
+ + ++S G DE + + K Y ++ L K+G+ + A + +E
Sbjct: 406 IPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDE 465
Query: 340 WELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNN 399
+ R +LLG QKGM+ +A ++L ++ G+T ++I+ GYA
Sbjct: 466 MCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGC 525
Query: 400 MEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQKRNM 459
+E+A E K + P + +S++ +++ E + +K+ ++
Sbjct: 526 IEEALELFKVVIETG-----ITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSV 580
Query: 460 --YHALTEAHIRSG--QEVDGLLESMKADDI 486
Y L +A+ G + +D L MKA+ I
Sbjct: 581 VSYTTLMDAYANCGNTKSIDELRREMKAEGI 611
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/344 (21%), Positives = 142/344 (41%), Gaps = 58/344 (16%)
Query: 76 IRQLRSRKRFKHA----LQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLN 131
++LR F+H+ L VS ++GQ + V L+ + + G E NS
Sbjct: 105 FKELRDIYAFRHSSFSTLLVSHVLAGQR---RFKELQVILEQLLQEEG-TLCELLSNSFR 160
Query: 132 DEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKI 191
+ ++ LL R +VD+SL +++KMK+ S +YN ++
Sbjct: 161 KWESTGLVWDMLLFLSSRLRMVDDSLYILKKMKDQNLNVSTQSYNSVL------------ 208
Query: 192 PDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVAN 251
+ +R E M +V +E++ ++ TYSTV +
Sbjct: 209 ----------------YHFR----------ETDKMWDVYKEIKDKNE-----HTYSTVVD 237
Query: 252 YYIIAGLKEKAIIYLKKCE--DIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKC 309
E A+++L+ E DI + +N ++S Y LG D M K + +KC
Sbjct: 238 GLCRQQKLEDAVLFLRTSEWKDI---GPSVVSFNSIMSGYCKLGFVD-MAKSFFCTVLKC 293
Query: 310 KKQLN-RDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKA 368
+ + ++ L +G + EA ++ + D NI+ G+ GMI A
Sbjct: 294 GLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGA 353
Query: 369 DAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412
V+++++ KG +P +++I+ G N++ +K+ L+
Sbjct: 354 WEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLS 397
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 31/189 (16%)
Query: 119 GLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGI 178
G+ + FNSL +YG Y + + E+ ++ +K G S ++Y +
Sbjct: 540 GITPSVATFNSL--------IYG-----YCKTQNIAEARKILDVIKLYGLAPSVVSYTTL 586
Query: 179 MCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQE------ 232
M Y N G + I ++ +MK G+PP N +Y + + + +VL+E
Sbjct: 587 MDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKC 646
Query: 233 ------MESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDA--LGYNH 284
MES+ I D TY+T+ Y A ++L E + S++ DA YN
Sbjct: 647 KQGLRDMESEG-IPPDQITYNTIIQYLCRVKHLSGAFVFL---EIMKSRNLDASSATYNI 702
Query: 285 LISHYASLG 293
LI G
Sbjct: 703 LIDSLCVYG 711
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 58/288 (20%), Positives = 123/288 (42%), Gaps = 25/288 (8%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMG-SFGSALNYNGIMCLYTNTGQHEKIPDVLLDM 198
Y LL + G +D L L++ M G S + + ++ TG+ ++ + M
Sbjct: 372 YTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQM 431
Query: 199 KENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGL 258
K +G+ PD +Y I I+ + + EM + + ++ + ++ GL
Sbjct: 432 KADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILP------NSRTHGALLLGL 485
Query: 259 KEKAIIYLKK--CEDIVSKSK--DALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLN 314
+K ++ + + ++S + D + YN +I YA G +E ++ + K+ + +
Sbjct: 486 CQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELF---KVVIETGIT 542
Query: 315 RDYIT---MLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAV 371
T ++ K + EA K+L+ +L ++ Y+ G + D +
Sbjct: 543 PSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDEL 602
Query: 372 LKEIVKKGKTPTPNSWSIIAAG------YADKNNM--EKAFECMKEAL 411
+E+ +G PT ++S+I G + + N++ E+ FE K+ L
Sbjct: 603 RREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGL 650
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 134/309 (43%), Gaps = 55/309 (17%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIM---CLYTNTGQHEKIPDVLL 196
+ ++N + G ++++ +M+ MK G + ++YN ++ C G+ K VL
Sbjct: 226 FNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLK 285
Query: 197 DMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVAN----- 251
+M EN V P+ ++ I I+ + L V +EM Q + + +Y+++ N
Sbjct: 286 EMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQD-VKPNVISYNSLINGLCNG 344
Query: 252 -----------YYIIAGLKEKAIIYLKK----CE-DIVSKSKDALG-------------Y 282
+ AG++ I Y C+ D++ ++ D G Y
Sbjct: 345 GKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMY 404
Query: 283 NHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRD--------YITMLGSLVKIGELEEAE 334
N LI Y LG D+ K+++ R+ Y ++ L + G +E A+
Sbjct: 405 NMLIDAYCKLGKIDDGFAL--------KEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAK 456
Query: 335 KMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGY 394
K+ ++ S D +I++ GY +KG KA +LKE+ K G P +++I+ GY
Sbjct: 457 KLFDQLT-SKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGY 515
Query: 395 ADKNNMEKA 403
+ N++ A
Sbjct: 516 CKEGNLKAA 524
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 121/268 (45%), Gaps = 22/268 (8%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
Y +L+N G + E++S+ KM G + + YN ++ + ++ D+ +K
Sbjct: 334 YNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVK 393
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLK 259
G P Y + I++Y ++ + +EME + I D GTY+ +IAGL
Sbjct: 394 GQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREG-IVPDVGTYNC-----LIAGLC 447
Query: 260 EKAIIYLKK--CEDIVSKS-KDALGYNHLISHYASLG-NKDEMMKFWGLQKIKCKKQLNR 315
I K + + SK D + ++ L+ Y G ++ M + K+ K + +
Sbjct: 448 RNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPR-HL 506
Query: 316 DYITMLGSLVKIGELEEAEKMLEEWE------LSCYCYDFRVPNIILLGYSQKGMIEKAD 369
Y ++ K G L+ A M + E ++ Y N++L GYSQKG +E A+
Sbjct: 507 TYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASY-----NVLLQGYSQKGKLEDAN 561
Query: 370 AVLKEIVKKGKTPTPNSWSIIAAGYADK 397
+L E+++KG P ++ I+ D+
Sbjct: 562 MLLNEMLEKGLVPNRITYEIVKEEMVDQ 589
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 111/276 (40%), Gaps = 39/276 (14%)
Query: 171 SALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSY---GARSELSSME 227
+ +N ++ TG+ K DV+ DMK G P+ SY I+ Y G ++ +
Sbjct: 222 NVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKAD 281
Query: 228 NVLQEMESQSHISMDWGTYSTVANYY----------------IIAGLKEKAIIY------ 265
VL+EM ++ +S + T++ + + + + +K I Y
Sbjct: 282 AVLKEM-VENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLING 340
Query: 266 ----LKKCEDIVSKSK--------DALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQL 313
K E I + K + + YN LI+ + E + +G K +
Sbjct: 341 LCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPT 400
Query: 314 NRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLK 373
R Y ++ + K+G++++ + EE E D N ++ G + G IE A +
Sbjct: 401 TRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFD 460
Query: 374 EIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKE 409
++ KG P ++ I+ GY K KA +KE
Sbjct: 461 QLTSKG-LPDLVTFHILMEGYCRKGESRKAAMLLKE 495
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 86/211 (40%), Gaps = 3/211 (1%)
Query: 58 DQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKV 117
D+ V G + + + +I K AL + + GQG + + + +D K+
Sbjct: 355 DKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKL 414
Query: 118 RGLESAETYFNSLNDEDKVDKL--YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNY 175
++ + E V + Y L+ R G ++ + L ++ G + +
Sbjct: 415 GKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG-LPDLVTF 473
Query: 176 NGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMES 235
+ +M Y G+ K +L +M + G+ P + +Y I + Y L + N+ +ME
Sbjct: 474 HILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEK 533
Query: 236 QSHISMDWGTYSTVANYYIIAGLKEKAIIYL 266
+ + M+ +Y+ + Y G E A + L
Sbjct: 534 ERRLRMNVASYNVLLQGYSQKGKLEDANMLL 564
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 95/208 (45%), Gaps = 37/208 (17%)
Query: 319 TMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQ---KGMIEKADAVLKEI 375
++ +L K G++ +A ++E+ ++ + N ++ GY + G + KADAVLKE+
Sbjct: 228 VVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEM 287
Query: 376 VKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEAL------------------------ 411
V+ +P +++I+ G+ +N+ + + KE L
Sbjct: 288 VENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKI 347
Query: 412 --AVHEENKFWRP--KPSLVS--SILDWLGDNRDVEEVEAFVSSLKIK--VQKRNMYHAL 463
A+ +K +P+L++ ++++ N ++E S+K + V MY+ L
Sbjct: 348 SEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNML 407
Query: 464 TEAHIRSGQEVDG--LLESMKADDIDED 489
+A+ + G+ DG L E M+ + I D
Sbjct: 408 IDAYCKLGKIDDGFALKEEMEREGIVPD 435
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/350 (22%), Positives = 150/350 (42%), Gaps = 22/350 (6%)
Query: 83 KRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLN--DEDKVDKLY 140
K A + M +GL + +++ +D K + ++A N +N + + + +Y
Sbjct: 498 KNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIY 557
Query: 141 GALLNCYVREGLVDESLSLMQKM-KEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
++N + G ++ ++Q + KE S +YN I+ + G + + +M
Sbjct: 558 NTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMS 617
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLK 259
ENG P+ ++ IN + + + + EM+S + +D Y + + +
Sbjct: 618 ENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSM-ELKLDLPAYGALIDGFCKKNDM 676
Query: 260 EKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNR---- 315
+ A + ++ ++ YN LIS + +LG D + + KK +N
Sbjct: 677 KTAYTLFSELPELGLMPNVSV-YNSLISGFRNLGKMDAAIDLY-------KKMVNDGISC 728
Query: 316 ---DYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVL 372
Y TM+ L+K G + A + E D + +++ G S+KG KA +L
Sbjct: 729 DLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKML 788
Query: 373 KEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEAL---AVHEENKF 419
+E+ KK TP +S + AG+ + N+ +AF E L VH++ F
Sbjct: 789 EEMKKKDVTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTVF 838
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 125/293 (42%), Gaps = 5/293 (1%)
Query: 121 ESAETYFNSLNDEDKVDKLYGALLN----CYVREGLVDESLSLMQKMKEMGSFGSALNYN 176
ES E ND + +G + N + ++G VD + S ++ M++ G + + YN
Sbjct: 429 ESPEAALEIFNDSFESWIAHGFMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYN 488
Query: 177 GIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQ 236
+M + + + +M E G+ P+NF+Y I I+ + + + +V+ +M +
Sbjct: 489 NMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNA- 547
Query: 237 SHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKD 296
S+ + Y+T+ N G KA L+ S YN +I + +G+ D
Sbjct: 548 SNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTD 607
Query: 297 EMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIIL 356
++ + K + +++ K ++ A +M E + D ++
Sbjct: 608 SAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALI 667
Query: 357 LGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKE 409
G+ +K ++ A + E+ + G P + ++ + +G+ + M+ A + K+
Sbjct: 668 DGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKK 720
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 93/439 (21%), Positives = 176/439 (40%), Gaps = 99/439 (22%)
Query: 56 VLDQWVLEGQKISELELQRVIR-QLRSRKRFKHALQV-----SEWMSGQGLAFSVH---- 105
+ ++ VL G + Q ++R LR RK + A+++ S GL FS+
Sbjct: 226 IYNKMVLIGVAGDNVTTQLLMRASLRERKP-EEAVKIFRRVMSRGAEPDGLLFSLAVQAA 284
Query: 106 ----DHAVQLDLIGKVRG----LESAETYFNSL-------NDEDKV---DKLYG------ 141
D + LDL+ ++RG S ETY + + N E+ V D++ G
Sbjct: 285 CKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMS 344
Query: 142 -----ALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLL 196
+L+N Y + + ++L L +M+E G + ++ ++ + + EK + +
Sbjct: 345 VIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYM 404
Query: 197 DMKENGVPPDNFSYRICINS-YGARSELSSMENVLQEMESQSHISMDWGTYSTVAN---- 251
MK + P + I A S +++E ES W + + N
Sbjct: 405 RMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFES-------WIAHGFMCNKIFL 457
Query: 252 YYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKD-------EMMK---- 300
+ G + A +LK E + + YN+++ + + N D EM++
Sbjct: 458 LFCKQGKVDAATSFLKMMEQ-KGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLE 516
Query: 301 ---------FWGLQKIKCKK-------QLNRD--------YITMLGSLVKIGELEEAEKM 336
G K K ++ Q+N Y T++ L K+G+ +A++M
Sbjct: 517 PNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEM 576
Query: 337 LE------EWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSII 390
L+ + +SC Y N I+ G+ + G + A +E+ + GK+P +++ +
Sbjct: 577 LQNLIKEKRYSMSCTSY-----NSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSL 631
Query: 391 AAGYADKNNMEKAFECMKE 409
G+ N M+ A E E
Sbjct: 632 INGFCKSNRMDLALEMTHE 650
Score = 36.2 bits (82), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 53/121 (43%)
Query: 143 LLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENG 202
+L+ VR L+DE+ + KM +G G + +M + E+ + + G
Sbjct: 210 VLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAVKIFRRVMSRG 269
Query: 203 VPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKA 262
PD + + + + +L ++L+EM + + TY++V ++ G E+A
Sbjct: 270 AEPDGLLFSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEA 329
Query: 263 I 263
+
Sbjct: 330 V 330
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 84/384 (21%), Positives = 156/384 (40%), Gaps = 55/384 (14%)
Query: 141 GALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKE 200
GA+ N Y R+G V E++++ ++M + +YN IM + ++G ++ V + M++
Sbjct: 81 GAMKN-YGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRD 139
Query: 201 NGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTV----------A 250
G+ PD +S+ I + S+ S + +L M SQ M+ Y TV A
Sbjct: 140 RGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQG-CEMNVVAYCTVVGGFYEENFKA 198
Query: 251 NYYIIAGLKEKAIIYL------------------KKCEDIVSKS------KDALGYNHLI 286
Y + G + + L K+CE ++ K + YN I
Sbjct: 199 EGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFI 258
Query: 287 SHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAE----KMLEE-WE 341
G D ++ G + K Y ++ L K + +EAE KM+ E E
Sbjct: 259 QGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLE 318
Query: 342 LSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNME 401
Y Y N ++ GY + GM++ A+ ++ + V G P ++ + G +
Sbjct: 319 PDSYTY-----NTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETN 373
Query: 402 KAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIK--VQKRNM 459
+A EAL K +P L ++++ L + + E + + K + +
Sbjct: 374 RALALFNEALG-----KGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQT 428
Query: 460 YHALTEAHIRSG--QEVDGLLESM 481
++ L + G + DGL++ M
Sbjct: 429 FNILVNGLCKMGCVSDADGLVKVM 452
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 148/365 (40%), Gaps = 33/365 (9%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
+ LL ++G V E L+ K+ + G + YN + G+ + ++ +
Sbjct: 219 FNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLI 278
Query: 200 ENGVPPD-----NFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYI 254
E G PD N Y +C NS +E+ + V + +E S+ TY+T+ Y
Sbjct: 279 EQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSY------TYNTLIAGYC 332
Query: 255 IAGLKEKAIIYLKKCEDIVSKS------KDALGYNHLISHYASLGNKDEMMKFWGLQKIK 308
G+ + A E IV + D Y LI G + + + K
Sbjct: 333 KGGMVQLA-------ERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGK 385
Query: 309 CKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKA 368
K Y T++ L G + EA ++ E + + NI++ G + G + A
Sbjct: 386 GIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDA 445
Query: 369 DAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVS 428
D ++K ++ KG P +++I+ GY+ + ME A E + L + P +
Sbjct: 446 DGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVML-----DNGVDPDVYTYN 500
Query: 429 SILDWLGDNRDVEEVEAFVSSLKIKVQKRNM--YHALTEAHIRSGQ--EVDGLLESMKAD 484
S+L+ L E+V ++ K N+ ++ L E+ R + E GLLE MK
Sbjct: 501 SLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNK 560
Query: 485 DIDED 489
++ D
Sbjct: 561 SVNPD 565
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 143/335 (42%), Gaps = 43/335 (12%)
Query: 139 LYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDM 198
LY L+ +G++ E+ L +M E G +N ++ G ++ M
Sbjct: 393 LYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVM 452
Query: 199 KENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQ--SHISMDWGTYSTVANYYIIA 256
G PD F++ I I+ Y + + MEN L+ ++ + + D TY+++ N
Sbjct: 453 ISKGYFPDIFTFNILIHGYSTQLK---MENALEILDVMLDNGVDPDVYTYNSLLN----- 504
Query: 257 GLKEKAIIYLKKCEDIVSKSK---------DALGYNHLISHYASLGNKDEMMKFWGLQKI 307
GL + + K ED++ K + +N L+ DE + L+++
Sbjct: 505 GLCKTS-----KFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGL--LEEM 557
Query: 308 KCKKQLNRDYITMLGSLV----KIGELEEAEKMLEEWELSCYCYDFRVP--NIILLGYSQ 361
K K +N D +T G+L+ K G+L+ A + + E Y P NII+ +++
Sbjct: 558 K-NKSVNPDAVT-FGTLIDGFCKNGDLDGAYTLFRKME-EAYKVSSSTPTYNIIIHAFTE 614
Query: 362 KGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWR 421
K + A+ + +E+V + P ++ ++ G+ N+ ++ + E + EN F
Sbjct: 615 KLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMM----ENGFI- 669
Query: 422 PKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456
P + + +++ L V E + + VQK
Sbjct: 670 PSLTTLGRVINCLCVEDRVYEAAGIIHRM---VQK 701
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 54/281 (19%), Positives = 113/281 (40%), Gaps = 37/281 (13%)
Query: 104 VHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKM 163
+H ++ QL + LE + ++ D D Y +LLN + ++ + + M
Sbjct: 468 IHGYSTQLKM---ENALEILDVMLDNGVDPDVYT--YNSLLNGLCKTSKFEDVMETYKTM 522
Query: 164 KEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSEL 223
E G + +N ++ + ++ +L +MK V PD ++ I+ + +L
Sbjct: 523 VEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDL 582
Query: 224 SSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYL--KKCEDIVSKSKDALG 281
+ ++ME +S TY+ II EK + + K +++V + G
Sbjct: 583 DGAYTLFRKMEEAYKVSSSTPTYNI-----IIHAFTEKLNVTMAEKLFQEMVDRCLGPDG 637
Query: 282 YNH--LISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEE 339
Y + ++ + GN + KF + + +I L +L ++
Sbjct: 638 YTYRLMVDGFCKTGNVNLGYKFL-------LEMMENGFIPSLTTLGRV------------ 678
Query: 340 WELSCYCYDFRVPNI--ILLGYSQKGMIEKADAVLKEIVKK 378
++C C + RV I+ QKG++ +A + ++ KK
Sbjct: 679 --INCLCVEDRVYEAAGIIHRMVQKGLVPEAVNTICDVDKK 717
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/357 (22%), Positives = 157/357 (43%), Gaps = 15/357 (4%)
Query: 139 LYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDM 198
++ L+ Y ++G VD+++ + KM++ G +A+ Y ++ + +G+ E M
Sbjct: 373 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432
Query: 199 KENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGL 258
+ G+ P N Y I+ ++ E ++ EM + I ++ ++++ + +
Sbjct: 433 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG-ICLNTIFFNSIIDSHC---- 487
Query: 259 KEKAIIYLKKCEDIVSK---SKDALGYNHLISHYASLGNKDEMMKFW-GLQKIKCKKQLN 314
KE +I +K +++ + + + YN LI+ Y G DE MK G+ + K
Sbjct: 488 KEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPN-T 546
Query: 315 RDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKE 374
Y T++ KI +E+A + +E E S D NIIL G Q A +
Sbjct: 547 VTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVR 606
Query: 375 IVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWL 434
I + G ++++II G + A + M + L + + R ++ ++L +
Sbjct: 607 ITESGTQIELSTYNIILHGLCKNKLTDDALQ-MFQNLCLMDLKLEARTFNIMIDALLK-V 664
Query: 435 GDNRDVEEVEAFVSSLKIKVQKRNMYHALTEAHIRSG--QEVDGLLESMKADDIDED 489
G N + +++ SS + V Y + E I G +E+D L SM+ + D
Sbjct: 665 GRNDEAKDLFVAFSSNGL-VPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVD 720
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 123/312 (39%), Gaps = 57/312 (18%)
Query: 140 YGALLNCYVREGLVDESLS------------------------------------LMQKM 163
YG L+ C R G +D + ++++M
Sbjct: 90 YGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 149
Query: 164 KEMGSFGSALNYNGI---MCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGAR 220
E+G + +YN + +C + + ++ ++ D + G PPD SY IN +
Sbjct: 150 TELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKE 209
Query: 221 SELSSMENVLQEMESQSHISMDWGTYSTVANY-YIIAGL-KEKAIIYLKKCEDIVSKS-- 276
+ + EM +D G V Y IIA L K +A+ + + + K+
Sbjct: 210 GDSDKAYSTYHEM-------LDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGV 262
Query: 277 -KDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYIT---MLGSLVKIGELEE 332
D + YN ++ Y S G E + F L+K++ + D +T ++ L K G E
Sbjct: 263 MPDCMTYNSILHGYCSSGQPKEAIGF--LKKMR-SDGVEPDVVTYSLLMDYLCKNGRCME 319
Query: 333 AEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAA 392
A K+ + + +L GY+ KG + + +L +V+ G P +SI+
Sbjct: 320 ARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILIC 379
Query: 393 GYADKNNMEKAF 404
YA + +++A
Sbjct: 380 AYAKQGKVDQAM 391
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 121/283 (42%), Gaps = 24/283 (8%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
Y ++N + +EG D++ S +M + G + YN I+ +K +VL M
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV 258
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLK 259
+NGV PD +Y ++ Y + + L++M S + D TYS + +Y G
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDG-VEPDVVTYSLLMDYLCKNGRC 317
Query: 260 EKAIIYLKKCEDIVSK---SKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRD 316
+A +K D ++K + Y L+ YA+ G EM GL + + ++ D
Sbjct: 318 MEA----RKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEM---HGLLDLMVRNGIHPD 370
Query: 317 YIT---MLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLG-----YSQKGMIEKA 368
+ ++ + K G++++A + + PN + G + G +E A
Sbjct: 371 HYVFSILICAYAKQGKVDQAMLVFSKMR-----QQGLNPNAVTYGAVIGILCKSGRVEDA 425
Query: 369 DAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEAL 411
++++ +G +P ++ + G N E+A E + E L
Sbjct: 426 MLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 124/280 (44%), Gaps = 32/280 (11%)
Query: 139 LYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDM 198
+ ++++ + +EG V ES L + M +G + + YN ++ Y G+ ++ +L M
Sbjct: 478 FFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGM 537
Query: 199 KENGVPPDNFSYRICINSYGARSELSSMENVL---QEMESQSHISMDWGTYSTVANYYI- 254
G+ P+ +Y IN Y ++S ME+ L +EMES S +S D TY+ +
Sbjct: 538 VSVGLKPNTVTYSTLINGY---CKISRMEDALVLFKEMES-SGVSPDIITYNIILQGLFQ 593
Query: 255 ---IAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNK---DEMMKFWGLQKIK 308
A KE +Y++ E S ++ L ++I H NK D + F L +
Sbjct: 594 TRRTAAAKE---LYVRITE---SGTQIELSTYNIILH-GLCKNKLTDDALQMFQNLCLMD 646
Query: 309 CKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSC-----YCYDFRVPNIILLGYSQKG 363
K + R + M+ +L+K+G +EA+ + + + + Y NII +G
Sbjct: 647 LKLE-ARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENII-----GQG 700
Query: 364 MIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKA 403
++E+ D + + G T + I + + +A
Sbjct: 701 LLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRA 740
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 104/241 (43%), Gaps = 6/241 (2%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
Y L+N Y G +DE++ L+ M +G + + Y+ ++ Y + E + +M+
Sbjct: 514 YNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEME 573
Query: 200 ENGVPPDNFSYRICINS-YGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGL 258
+GV PD +Y I + + R ++ E ++ ES + I + TY+ + + L
Sbjct: 574 SSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELS--TYNIILHGLCKNKL 631
Query: 259 KEKAI-IYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDY 317
+ A+ ++ C ++ +A +N +I +G DE + Y
Sbjct: 632 TDDALQMFQNLC--LMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 689
Query: 318 ITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVK 377
M +++ G LEE +++ E + D + N I+ Q+G I +A L I +
Sbjct: 690 RLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDE 749
Query: 378 K 378
K
Sbjct: 750 K 750
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 104/482 (21%), Positives = 187/482 (38%), Gaps = 96/482 (19%)
Query: 68 SELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLD-------------LI 114
S ++ R + K+F L + + G+A +++ + ++ ++
Sbjct: 87 SLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVL 146
Query: 115 GKVR--GLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSA 172
GKV G E T FN+L + G L EG V E++ L+ +M E G
Sbjct: 147 GKVMKLGYEPDTTTFNTL--------IKGLFL-----EGKVSEAVVLVDRMVENGCQPDV 193
Query: 173 LNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQE 232
+ YN I+ +G D+L M+E V D F+Y I+S + + ++ +E
Sbjct: 194 VTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKE 253
Query: 233 MESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKS--KDALGYNHLISHYA 290
ME++ I TY+++ AG + LK D+VS+ + + +N L+ +
Sbjct: 254 METKG-IKSSVVTYNSLVRGLCKAGKWNDGALLLK---DMVSREIVPNVITFNVLLDVFV 309
Query: 291 SLGNKDEMMKFWGLQKIKCKKQLNR-------DYITMLGSLVKIGELEEAEKMLEEWE-- 341
G E + + K+ + R Y T++ L EA ML+
Sbjct: 310 KEGKLQEANELY-------KEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN 362
Query: 342 ------------LSCYCYDFRVPN---------------------IILLGYSQKGMIEKA 368
+ YC RV + I++ G+ Q G I+ A
Sbjct: 363 KCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 422
Query: 369 DAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLV- 427
+ + +E+V G P ++ I+ G D +EKA E + E+ + + +V
Sbjct: 423 EELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALE-------IFEDLQKSKMDLGIVM 475
Query: 428 -SSILDWLGDNRDVEEVEAFVSSLKIKVQKRNM--YHALTEAHIRSG--QEVDGLLESMK 482
++I++ + VE+ SL K K N+ Y + + G E + LL M+
Sbjct: 476 YTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKME 535
Query: 483 AD 484
D
Sbjct: 536 ED 537
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 71/155 (45%), Gaps = 4/155 (2%)
Query: 84 RFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVD---KLY 140
+ K A ++ + M G+ V + + LD + LE A F L + K+D +Y
Sbjct: 418 KIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQ-KSKMDLGIVMY 476
Query: 141 GALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKE 200
++ + G V+++ +L + G + + Y ++ G + +L M+E
Sbjct: 477 TTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 536
Query: 201 NGVPPDNFSYRICINSYGARSELSSMENVLQEMES 235
+G P++ +Y I ++ +L++ +++EM+S
Sbjct: 537 DGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKS 571
>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630
OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
Length = 574
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 150/311 (48%), Gaps = 17/311 (5%)
Query: 139 LYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDM 198
+ A++N + G +++++ + KMKE+G + YN ++ Y G+ E+ ++L M
Sbjct: 117 FFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLM 176
Query: 199 KENG---VPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYII 255
E G V P+ ++ + + ++ + ++ V+++ME + + D TY+T+A Y+
Sbjct: 177 LEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKME-ECGVRPDTVTYNTIATCYVQ 235
Query: 256 AGLKEKAIIYLKKCEDIVSKSK---DALGYNHLISHYASLGNKDEMMKFWG-LQKIKCKK 311
G +A + E +V K K + ++ Y G + ++F +++++ +
Sbjct: 236 KGETVRA--ESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEA 293
Query: 312 QLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAV 371
L + +++ V++ + + +++L + D + ++ +S G +EKA V
Sbjct: 294 NL-VVFNSLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQV 352
Query: 372 LKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSIL 431
KE+VK G P +++SI+A GY +KA E + E L V RP + ++++
Sbjct: 353 FKEMVKAGVKPDAHAYSILAKGYVRAKEPKKAEELL-ETLIVES-----RPNVVIFTTVI 406
Query: 432 DWLGDNRDVEE 442
N +++
Sbjct: 407 SGWCSNGSMDD 417
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 3/162 (1%)
Query: 141 GALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKE 200
G ++ Y REG V + L +++MKEM + + +N ++ + + I +VL MKE
Sbjct: 264 GIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKE 323
Query: 201 NGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKE 260
V D +Y +N++ + + V +EM ++ + D YS +A Y+ A +
Sbjct: 324 CNVKADVITYSTVMNAWSSAGYMEKAAQVFKEM-VKAGVKPDAHAYSILAKGYVRAKEPK 382
Query: 261 KAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFW 302
KA L+ IV + + + +IS + S G+ D+ M+ +
Sbjct: 383 KAEELLETL--IVESRPNVVIFTTVISGWCSNGSMDDAMRVF 422
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%)
Query: 178 IMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQS 237
+M + G+ + V + E G P SY + + + + S+ +++ E+E QS
Sbjct: 51 LMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVE-QS 109
Query: 238 HISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDE 297
+D ++ V N + +G E A+ L K +++ + YN LI Y G +
Sbjct: 110 GTKLDSIFFNAVINAFSESGNMEDAVQALLKMKEL-GLNPTTSTYNTLIKGYGIAGKPER 168
Query: 298 MMKFWGLQKIKCKKQLN---RDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNI 354
+ L + + R + ++ + K ++EEA +++++ E D N
Sbjct: 169 SSELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNT 228
Query: 355 ILLGYSQKGMIEKADA--VLKEIVKKGKTPTPNSWSIIAAGYA 395
I Y QKG +A++ V K ++K+ P + I+ GY
Sbjct: 229 IATCYVQKGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYC 271
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 132/302 (43%), Gaps = 16/302 (5%)
Query: 84 RFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKL--YG 141
+F AL V M A + + +D+ G++ ++ A+ F SL D + Y
Sbjct: 310 KFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYN 369
Query: 142 ALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKEN 201
+L Y L E++ L + M+ + + YN ++ +Y T +HEK +++ +M+
Sbjct: 370 TILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSR 429
Query: 202 GVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEK 261
G+ P+ +Y I+ +G +L + Q++ S S + +D Y T+ Y GL
Sbjct: 430 GIEPNAITYSTIISIWGKAGKLDRAATLFQKLRS-SGVEIDQVLYQTMIVAYERVGLMGH 488
Query: 262 AIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITML 321
A L + K D + I+ A G +E W ++ ++ I++
Sbjct: 489 AKRLLHEL-----KLPDNIPRETAITILAKAGRTEEAT--WVFRQAFESGEVKD--ISVF 539
Query: 322 GSLVKIGELEE----AEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVK 377
G ++ + + ++ E+ + Y D V ++L Y ++ EKAD V +E+ +
Sbjct: 540 GCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQE 599
Query: 378 KG 379
+G
Sbjct: 600 EG 601
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/350 (20%), Positives = 156/350 (44%), Gaps = 13/350 (3%)
Query: 61 VLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQG-LAFSVHDHAVQLDLIGKVRG 119
+L K +L ++ ++ L ++ +L + +W+ + SV + V L + + +
Sbjct: 111 LLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQ 170
Query: 120 LESAETYFNSLNDEDKVDK--LYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNG 177
+ A F+ + Y L+ + +EG+ D +LS +QKM++ G + Y+
Sbjct: 171 FDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSN 230
Query: 178 IMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQS 237
++ L + K + +K +G+ PD +Y IN YG +++EM +++
Sbjct: 231 LIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEM-NEA 289
Query: 238 HISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDE 297
+ + +YST+ + Y+ +A+ + ++ V+ + D N +I Y L E
Sbjct: 290 GVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKE-VNCALDLTTCNIMIDVYGQLDMVKE 348
Query: 298 MMK-FWGLQKIKCKKQLNRDYITML---GSLVKIGELEEAEKMLEEWELSCYCYDFRVPN 353
+ FW L+K+ + + Y T+L G GE ++++ ++ + N
Sbjct: 349 ADRLFWSLRKMDIEPNVV-SYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTY---N 404
Query: 354 IILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKA 403
++ Y + EKA +++E+ +G P ++S I + + +++A
Sbjct: 405 TMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRA 454
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/198 (18%), Positives = 79/198 (39%), Gaps = 33/198 (16%)
Query: 88 ALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED-KVDK-LYGALLN 145
A + + M +G+ + ++ + + GK L+ A T F L ++D+ LY ++
Sbjct: 419 ATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIV 478
Query: 146 CYVREGLVDESLSLMQKMK-------------------------------EMGSFGSALN 174
Y R GL+ + L+ ++K E G
Sbjct: 479 AYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISV 538
Query: 175 YNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEME 234
+ ++ LY+ ++ + +V M+ G PD+ + +N+YG + E + V +EM+
Sbjct: 539 FGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQ 598
Query: 235 SQSHISMDWGTYSTVANY 252
+ + D + ++ Y
Sbjct: 599 EEGCVFPDEVHFQMLSLY 616
>sp|Q0WVV0|PPR31_ARATH Pentatricopeptide repeat-containing protein At1g10910,
chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2
SV=1
Length = 664
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 86/433 (19%), Positives = 180/433 (41%), Gaps = 49/433 (11%)
Query: 71 ELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSL 130
+L ++R R++ +Q+ EWM G SV ++ + +G + + A + S+
Sbjct: 100 DLNVILRDFGISGRWQDLIQLFEWMQQHG-KISVSTYSSCIKFVG-AKNVSKALEIYQSI 157
Query: 131 NDEDKVDKLY--GALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNG----------- 177
DE +Y ++L+C V+ G +D + L +MK G + YN
Sbjct: 158 PDESTKINVYICNSILSCLVKNGKLDSCIKLFDQMKRDGLKPDVVTYNTLLAGCIKVKNG 217
Query: 178 -------------------------IMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRI 212
++ + + G+ E+ + + MK G P+ + Y
Sbjct: 218 YPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYHYSS 277
Query: 213 CINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDI 272
+NSY + + + ++ EM+S + + +T+ YI GL +++ L + E
Sbjct: 278 LLNSYSWKGDYKKADELMTEMKSIGLVP-NKVMMTTLLKVYIKGGLFDRSRELLSELES- 335
Query: 273 VSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEE 332
+++ + Y L+ + G +E + K K + M+ +L + +E
Sbjct: 336 AGYAENEMPYCMLMDGLSKAGKLEEARSIFDDMKGKGVRSDGYANSIMISALCRSKRFKE 395
Query: 333 AEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAA 392
A+++ + E + D + N +L Y + G +E ++K++ ++ +P N++ I+
Sbjct: 396 AKELSRDSETTYEKCDLVMLNTMLCAYCRAGEMESVMRMMKKMDEQAVSPDYNTFHILIK 455
Query: 393 GYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKI 452
+ + A++ L +H +K R + L SS++ LG R + EAF +
Sbjct: 456 YFIKEKLHLLAYQ---TTLDMH--SKGHRLEEELCSSLIYHLGKIR--AQAEAFSVYNML 508
Query: 453 KVQKRNMYHALTE 465
+ KR + L E
Sbjct: 509 RYSKRTICKELHE 521
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 152/338 (44%), Gaps = 24/338 (7%)
Query: 85 FKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGL------ESAETYFNSLNDEDKVDK 138
++ AL+V EW++ + H H+ ++ + G+ ES + + D+
Sbjct: 171 WQRALEVFEWLNLR------HWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDR 224
Query: 139 L--YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIM-CLYTNTGQHEKIPDVL 195
+ Y A++ Y R G ++ L+ M++ G +++N ++ + G + L
Sbjct: 225 VQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVEL 284
Query: 196 LDMKEN-GVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYI 254
LDM N G+ PD +Y +++ S L V ++ME+ D TY+ + + Y
Sbjct: 285 LDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAH-RCQPDLWTYNAMISVYG 343
Query: 255 IAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFW-GLQKIKCKKQL 313
GL +A + E + DA+ YN L+ +A N +++ + + +QK+ K
Sbjct: 344 RCGLAAEAERLFMELE-LKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKD- 401
Query: 314 NRDYITMLGSLVKIGELEEAEKMLEEWE-LSCYCYDFRVPNIILLGYSQKGMIEKADAVL 372
Y T++ K G+L+ A ++ ++ + LS D +++ + +A A++
Sbjct: 402 EMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALM 461
Query: 373 KEIVKKGKTPTPNSWSIIAAGYADKNNMEKA---FECM 407
E++ G PT ++S + GYA E+A F CM
Sbjct: 462 SEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCM 499
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 1/194 (0%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
Y A+++ Y R GL E+ L +++ G F A+ YN ++ + EK+ +V M+
Sbjct: 335 YNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQ 394
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLK 259
+ G D +Y I+ YG + +L + ++M+ S + D TY+ + + A
Sbjct: 395 KMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRT 454
Query: 260 EKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYIT 319
+A + + D+ K Y+ LI YA G ++E + K N Y
Sbjct: 455 VEAAALMSEMLDVGIKPT-LQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSV 513
Query: 320 MLGSLVKIGELEEA 333
ML L++ E +A
Sbjct: 514 MLDVLLRGNETRKA 527
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 124/301 (41%), Gaps = 43/301 (14%)
Query: 175 YNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEME 234
YN +M +Y+ +G+ K +++ M++ G PD S+ IN+ L+ N+ E+
Sbjct: 228 YNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTP--NLAVEL- 284
Query: 235 SQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGN 294
V N +GL+ DA+ YN L+S + N
Sbjct: 285 -----------LDMVRN----SGLR-----------------PDAITYNTLLSACSRDSN 312
Query: 295 KDEMMK-FWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPN 353
D +K F ++ +C+ L Y M+ + G EAE++ E EL + D N
Sbjct: 313 LDGAVKVFEDMEAHRCQPDL-WTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYN 371
Query: 354 IILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAV 413
+L ++++ EK V +++ K G +++ I Y + ++ A + K+ +
Sbjct: 372 SLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGL 431
Query: 414 HEENKFWRPKPSLVSSILDWLGD-NRDVEEVEAFVSSLKIKVQKR-NMYHALTEAHIRSG 471
N P + ++D LG NR VE L + ++ Y AL + ++G
Sbjct: 432 SGRN----PDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAG 487
Query: 472 Q 472
+
Sbjct: 488 K 488
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 116/273 (42%), Gaps = 15/273 (5%)
Query: 140 YGALLNCYVREGLVDESLS--LMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLD 197
+ L+N ++ G + +L+ L+ ++ G A+ YN ++ + + V D
Sbjct: 263 FNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFED 322
Query: 198 MKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAG 257
M+ + PD ++Y I+ YG + E + E+E + D TY N + A
Sbjct: 323 MEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFP-DAVTY----NSLLYAF 377
Query: 258 LKEKAIIYLKKCEDIVSK---SKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLN 314
+E+ +K+ + K KD + YN +I Y G D ++ + + +K N
Sbjct: 378 ARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLY--KDMKGLSGRN 435
Query: 315 RDYIT---MLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAV 371
D IT ++ SL K EA ++ E + + ++ GY++ G E+A+
Sbjct: 436 PDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDT 495
Query: 372 LKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAF 404
+++ G P ++S++ N KA+
Sbjct: 496 FSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAW 528
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 119/282 (42%), Gaps = 22/282 (7%)
Query: 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK 199
Y LL+ R+ +D ++ + + M+ YN ++ +Y G + + ++++
Sbjct: 300 YNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELE 359
Query: 200 ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLK 259
G PD +Y + ++ ++ V Q+M+ D TY+T+ + Y G
Sbjct: 360 LKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMG-FGKDEMTYNTIIHMYGKQGQL 418
Query: 260 EKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQK----IKCKKQLNR 315
+ A+ K + + ++ DA+ Y LI SLG + ++ L + K L +
Sbjct: 419 DLALQLYKDMKGLSGRNPDAITYTVLID---SLGKANRTVEAAALMSEMLDVGIKPTL-Q 474
Query: 316 DYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPN----IILLGYSQKG-MIEKADA 370
Y ++ K G+ EEAE SC P+ ++L +G KA
Sbjct: 475 TYSALICGYAKAGKREEAEDT-----FSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWG 529
Query: 371 VLKEIVKKGKTPTPNSWSIIAAGYADKN---NMEKAFECMKE 409
+ ++++ G TP+ + ++ G +N +++K M+E
Sbjct: 530 LYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEE 571
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 98/209 (46%), Gaps = 6/209 (2%)
Query: 95 MSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED-KVD-KLYGALLNCYVREGL 152
M G ++ + + ++L+ K + + AE + + + + KV+ ++ ++L Y
Sbjct: 883 MKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIED 942
Query: 153 VDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRI 212
+++ + Q++KE G YN ++ +Y + E+ ++ M+ G+ P +Y+
Sbjct: 943 YKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKS 1002
Query: 213 CINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDI 272
I+++G + L E + +E+ S+ + +D Y T+ +G KA L+ ++
Sbjct: 1003 LISAFGKQKCLEQAEQLFEELLSKG-LKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKN- 1060
Query: 273 VSKSKDALGYNHLI-SHYASLGNKDEMMK 300
+ + L HL+ Y+S GN E K
Sbjct: 1061 -AGIEPTLATMHLLMVSYSSSGNPQEAEK 1088
Score = 36.6 bits (83), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 355 ILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVH 414
I+ Y ++ + +KA++V+ + + G+TP +W+ + + YA C + A A+
Sbjct: 758 IIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCG-------CYERARAIF 810
Query: 415 EENKFWRPKPSL--VSSILDWLGDNRDVEEVEAFVSSLK---IKVQKRNMYHALTEAHIR 469
P P++ ++ +L L + +EE+ V L+ K+ K ++ L +A R
Sbjct: 811 NTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLML-DAFAR 869
Query: 470 SGQ--EVDGLLESMKA 483
+G EV + SMKA
Sbjct: 870 AGNIFEVKKIYSSMKA 885
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 331 EEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSII 390
++AE ++ S D + N ++ Y+Q G E+A A+ +++ G +PT S +I+
Sbjct: 769 QKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINIL 828
Query: 391 AAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSL 450
+E+ + ++E ++ ++ S + +LD ++ EV+ SS+
Sbjct: 829 LHALCVDGRLEELYVVVEEL-----QDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSM 883
Query: 451 K 451
K
Sbjct: 884 K 884
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 55/287 (19%), Positives = 120/287 (41%), Gaps = 8/287 (2%)
Query: 121 ESAETYFNSLNDEDKVDKL--YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGI 178
E A FN++ + + LL+ +G ++E +++++++MG S + +
Sbjct: 804 ERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLM 863
Query: 179 MCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSH 238
+ + G ++ + MK G P YR+ I + E ++ EME +++
Sbjct: 864 LDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEME-EAN 922
Query: 239 ISMDWGTYSTVANYYI-IAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDE 297
++ ++++ Y I K+ +Y + E D YN LI Y +E
Sbjct: 923 FKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKE--TGLEPDETTYNTLIIMYCRDRRPEE 980
Query: 298 -MMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIIL 356
+ ++ + +L+ Y +++ + K LE+AE++ EE D + ++
Sbjct: 981 GYLLMQQMRNLGLDPKLD-TYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMM 1039
Query: 357 LGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKA 403
G KA+ +L+ + G PT + ++ Y+ N ++A
Sbjct: 1040 KISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEA 1086
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,556,009
Number of Sequences: 539616
Number of extensions: 7761005
Number of successful extensions: 25482
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 171
Number of HSP's that attempted gapping in prelim test: 22733
Number of HSP's gapped (non-prelim): 1581
length of query: 490
length of database: 191,569,459
effective HSP length: 122
effective length of query: 368
effective length of database: 125,736,307
effective search space: 46270960976
effective search space used: 46270960976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)