Query 011236
Match_columns 490
No_of_seqs 639 out of 2789
Neff 11.6
Searched_HMMs 46136
Date Thu Mar 28 23:06:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.8E-67 3.8E-72 527.8 50.2 461 20-489 425-914 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.5E-67 7.5E-72 525.7 51.2 448 32-490 369-847 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 3.1E-63 6.7E-68 506.5 44.6 451 16-489 136-588 (857)
4 PLN03081 pentatricopeptide (PP 100.0 2.9E-62 6.3E-67 487.9 46.4 439 33-488 87-561 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.2E-61 4.7E-66 493.0 47.7 464 5-489 228-725 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.9E-58 4E-63 460.6 41.5 403 65-489 83-493 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-29 4.8E-34 263.4 49.1 427 35-482 467-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-28 2.3E-33 258.3 50.3 430 37-486 435-868 (899)
9 KOG4626 O-linked N-acetylgluco 100.0 3.3E-25 7.2E-30 198.8 32.1 431 36-489 51-488 (966)
10 KOG4626 O-linked N-acetylgluco 99.9 4.1E-23 9E-28 185.5 30.9 384 65-468 112-501 (966)
11 PRK11788 tetratricopeptide rep 99.9 4.9E-23 1.1E-27 193.5 32.5 301 112-425 43-354 (389)
12 PRK11788 tetratricopeptide rep 99.9 1.6E-22 3.5E-27 190.0 34.3 299 144-456 42-350 (389)
13 TIGR00990 3a0801s09 mitochondr 99.9 6.5E-21 1.4E-25 188.4 47.1 401 71-484 129-571 (615)
14 PRK11447 cellulose synthase su 99.9 8.8E-21 1.9E-25 199.5 48.4 319 147-484 279-700 (1157)
15 PRK11447 cellulose synthase su 99.9 4.3E-21 9.3E-26 201.8 45.9 424 44-488 280-745 (1157)
16 PRK15174 Vi polysaccharide exp 99.9 1.2E-20 2.6E-25 185.8 43.6 335 70-414 43-382 (656)
17 PRK15174 Vi polysaccharide exp 99.9 1.8E-20 3.9E-25 184.5 41.4 373 80-468 16-398 (656)
18 TIGR00990 3a0801s09 mitochondr 99.9 4.5E-19 9.8E-24 175.3 46.3 402 38-456 132-574 (615)
19 PRK10049 pgaA outer membrane p 99.9 4.8E-19 1E-23 178.3 45.6 406 65-484 11-456 (765)
20 PRK10049 pgaA outer membrane p 99.9 1E-19 2.2E-24 183.1 39.4 408 32-456 14-459 (765)
21 PRK14574 hmsH outer membrane p 99.9 5.4E-17 1.2E-21 160.5 44.4 424 43-483 44-512 (822)
22 KOG4422 Uncharacterized conser 99.8 1.7E-16 3.6E-21 137.3 38.5 434 32-486 115-592 (625)
23 PRK14574 hmsH outer membrane p 99.8 1.9E-16 4.1E-21 156.7 44.3 428 15-456 48-516 (822)
24 PRK09782 bacteriophage N4 rece 99.8 4.9E-16 1.1E-20 156.9 45.3 112 363-483 590-705 (987)
25 PRK09782 bacteriophage N4 rece 99.8 1.3E-15 2.8E-20 154.0 46.7 400 66-483 178-671 (987)
26 KOG2003 TPR repeat-containing 99.8 1.6E-16 3.5E-21 138.5 31.4 388 82-482 250-720 (840)
27 KOG2002 TPR-containing nuclear 99.8 1.1E-15 2.5E-20 145.2 34.5 416 32-456 269-748 (1018)
28 KOG2002 TPR-containing nuclear 99.8 9.8E-16 2.1E-20 145.6 32.8 370 33-412 307-744 (1018)
29 KOG4422 Uncharacterized conser 99.8 3.9E-14 8.4E-19 122.9 36.5 240 65-309 203-463 (625)
30 KOG2076 RNA polymerase III tra 99.8 3.7E-14 8.1E-19 134.1 36.9 380 70-452 140-554 (895)
31 PF13429 TPR_15: Tetratricopep 99.7 4E-17 8.7E-22 145.3 14.9 263 142-412 13-276 (280)
32 KOG0495 HAT repeat protein [RN 99.7 1.3E-12 2.9E-17 119.4 41.9 433 39-483 412-879 (913)
33 PRK10747 putative protoheme IX 99.7 6.5E-14 1.4E-18 130.4 33.6 283 150-452 97-389 (398)
34 KOG0547 Translocase of outer m 99.7 1.3E-13 2.9E-18 121.6 33.0 396 72-481 118-563 (606)
35 PF13429 TPR_15: Tetratricopep 99.7 1.3E-16 2.8E-21 142.1 13.6 261 109-377 13-276 (280)
36 PRK10747 putative protoheme IX 99.7 1.3E-13 2.9E-18 128.3 32.7 283 117-412 97-389 (398)
37 KOG2076 RNA polymerase III tra 99.7 1.7E-12 3.6E-17 123.2 39.4 400 68-475 206-723 (895)
38 TIGR00540 hemY_coli hemY prote 99.7 1.8E-13 3.9E-18 128.2 32.4 293 116-412 96-398 (409)
39 TIGR00540 hemY_coli hemY prote 99.7 1.2E-13 2.6E-18 129.4 30.5 299 72-377 85-398 (409)
40 KOG1155 Anaphase-promoting com 99.7 6.8E-12 1.5E-16 110.4 37.6 298 145-453 235-536 (559)
41 KOG2003 TPR repeat-containing 99.7 6.4E-14 1.4E-18 122.5 23.9 403 69-483 201-688 (840)
42 KOG0495 HAT repeat protein [RN 99.7 1.4E-11 3.1E-16 112.8 39.7 401 32-469 494-897 (913)
43 KOG1126 DNA-binding cell divis 99.7 2.7E-14 5.9E-19 130.9 22.5 284 84-384 334-626 (638)
44 COG2956 Predicted N-acetylgluc 99.6 2.4E-12 5.1E-17 108.1 30.3 287 150-453 48-347 (389)
45 KOG1126 DNA-binding cell divis 99.6 4.6E-14 9.9E-19 129.5 21.8 285 153-456 335-623 (638)
46 COG3071 HemY Uncharacterized e 99.6 5.9E-12 1.3E-16 109.0 31.2 286 150-452 97-389 (400)
47 KOG1173 Anaphase-promoting com 99.6 2E-11 4.4E-16 110.2 35.2 414 64-489 44-521 (611)
48 COG2956 Predicted N-acetylgluc 99.6 3.1E-12 6.6E-17 107.4 27.8 285 117-412 48-346 (389)
49 COG3071 HemY Uncharacterized e 99.6 9.2E-12 2E-16 107.8 31.2 291 82-412 97-389 (400)
50 KOG1915 Cell cycle control pro 99.6 2.9E-10 6.3E-15 100.6 39.9 353 116-484 153-536 (677)
51 KOG1155 Anaphase-promoting com 99.6 1.4E-10 3E-15 102.3 34.6 321 110-452 170-494 (559)
52 KOG1915 Cell cycle control pro 99.6 6.3E-10 1.4E-14 98.5 38.0 404 66-484 70-500 (677)
53 TIGR02521 type_IV_pilW type IV 99.5 2.1E-11 4.5E-16 106.0 25.9 203 241-453 29-232 (234)
54 KOG0547 Translocase of outer m 99.5 8.9E-11 1.9E-15 104.2 28.0 385 40-453 122-566 (606)
55 PRK12370 invasion protein regu 99.5 3.2E-11 7E-16 117.5 28.0 265 206-485 255-536 (553)
56 KOG1129 TPR repeat-containing 99.5 5.2E-12 1.1E-16 106.2 19.0 232 241-483 221-457 (478)
57 PRK12370 invasion protein regu 99.5 1.8E-11 4E-16 119.2 25.6 217 152-377 276-501 (553)
58 KOG4318 Bicoid mRNA stability 99.5 3.1E-11 6.7E-16 114.4 25.0 275 55-364 11-286 (1088)
59 KOG2047 mRNA splicing factor [ 99.5 4.9E-09 1.1E-13 96.4 38.1 301 34-343 139-506 (835)
60 KOG2376 Signal recognition par 99.5 2.8E-09 6.1E-14 97.1 35.8 426 37-481 13-517 (652)
61 KOG1173 Anaphase-promoting com 99.5 2.6E-10 5.6E-15 103.2 28.7 283 138-435 245-533 (611)
62 KOG1129 TPR repeat-containing 99.5 9.7E-12 2.1E-16 104.6 18.4 233 210-456 226-461 (478)
63 TIGR02521 type_IV_pilW type IV 99.5 9E-11 2E-15 101.9 25.1 201 206-412 30-231 (234)
64 PF12569 NARP1: NMDA receptor- 99.4 1.3E-09 2.8E-14 102.7 33.9 128 283-412 198-333 (517)
65 KOG1174 Anaphase-promoting com 99.4 6.6E-09 1.4E-13 90.7 33.8 365 104-483 97-499 (564)
66 KOG1156 N-terminal acetyltrans 99.4 9E-09 1.9E-13 94.9 35.6 385 81-486 19-470 (700)
67 KOG4318 Bicoid mRNA stability 99.4 3.3E-10 7.1E-15 107.6 26.3 272 90-397 11-284 (1088)
68 KOG2047 mRNA splicing factor [ 99.4 1.6E-08 3.4E-13 93.2 35.7 428 36-481 105-612 (835)
69 KOG4162 Predicted calmodulin-b 99.4 1.2E-08 2.6E-13 96.1 35.3 374 98-483 317-782 (799)
70 PF13041 PPR_2: PPR repeat fam 99.4 1E-12 2.2E-17 82.1 5.9 49 135-183 1-49 (50)
71 KOG3785 Uncharacterized conser 99.4 2.9E-09 6.2E-14 91.0 28.2 194 285-488 291-494 (557)
72 KOG1840 Kinesin light chain [C 99.4 6.2E-10 1.3E-14 103.6 26.5 244 208-452 200-478 (508)
73 PF13041 PPR_2: PPR repeat fam 99.4 1.5E-12 3.4E-17 81.2 6.5 50 347-396 1-50 (50)
74 PF12569 NARP1: NMDA receptor- 99.4 2.7E-09 5.8E-14 100.7 30.2 294 75-377 10-333 (517)
75 KOG1156 N-terminal acetyltrans 99.3 7.5E-08 1.6E-12 89.0 36.3 374 68-456 40-471 (700)
76 KOG4162 Predicted calmodulin-b 99.3 8.2E-08 1.8E-12 90.6 35.2 388 57-456 311-786 (799)
77 PRK11189 lipoprotein NlpI; Pro 99.3 6.3E-09 1.4E-13 92.9 26.3 127 245-376 66-192 (296)
78 cd05804 StaR_like StaR_like; a 99.3 7.2E-08 1.6E-12 89.5 33.4 311 137-453 6-336 (355)
79 COG3063 PilF Tfp pilus assembl 99.3 1.4E-08 3E-13 81.9 24.0 202 245-456 37-239 (250)
80 KOG0548 Molecular co-chaperone 99.3 4.3E-08 9.3E-13 88.7 29.8 397 43-466 12-469 (539)
81 KOG1840 Kinesin light chain [C 99.3 5.4E-09 1.2E-13 97.4 25.0 241 242-482 198-477 (508)
82 KOG1174 Anaphase-promoting com 99.3 4.1E-08 8.8E-13 85.8 28.3 311 94-415 184-502 (564)
83 PRK11189 lipoprotein NlpI; Pro 99.2 8.3E-09 1.8E-13 92.2 25.1 219 83-310 40-267 (296)
84 COG3063 PilF Tfp pilus assembl 99.2 1.3E-08 2.8E-13 82.1 23.0 200 139-343 37-236 (250)
85 cd05804 StaR_like StaR_like; a 99.2 1.1E-07 2.5E-12 88.2 32.2 199 212-412 119-335 (355)
86 KOG3785 Uncharacterized conser 99.2 5.4E-08 1.2E-12 83.4 26.6 364 77-457 65-494 (557)
87 KOG4340 Uncharacterized conser 99.2 8.2E-08 1.8E-12 80.4 25.7 394 36-455 13-445 (459)
88 PF04733 Coatomer_E: Coatomer 99.1 2.5E-09 5.4E-14 94.0 14.7 253 182-456 11-268 (290)
89 PRK04841 transcriptional regul 99.1 1.3E-06 2.9E-11 91.8 36.9 343 113-456 383-763 (903)
90 KOG0624 dsRNA-activated protei 99.1 1.2E-06 2.5E-11 75.2 29.0 316 68-412 37-369 (504)
91 PRK04841 transcriptional regul 99.1 2.1E-06 4.5E-11 90.4 36.8 334 145-484 382-760 (903)
92 KOG1125 TPR repeat-containing 99.0 3.7E-08 7.9E-13 90.0 19.0 223 113-341 294-525 (579)
93 KOG2376 Signal recognition par 99.0 9.9E-06 2.1E-10 74.7 33.8 351 76-450 84-517 (652)
94 KOG1125 TPR repeat-containing 99.0 2.9E-08 6.4E-13 90.6 17.4 242 216-471 294-556 (579)
95 PF04733 Coatomer_E: Coatomer 99.0 8.6E-09 1.9E-13 90.6 13.6 81 330-412 183-264 (290)
96 KOG0985 Vesicle coat protein c 99.0 1.1E-05 2.4E-10 78.8 35.0 358 67-478 950-1335(1666)
97 PLN02789 farnesyltranstransfer 98.9 3.7E-06 8E-11 75.1 27.6 231 220-464 50-314 (320)
98 KOG0624 dsRNA-activated protei 98.9 1.3E-05 2.8E-10 69.0 29.0 312 109-456 43-373 (504)
99 KOG1070 rRNA processing protei 98.9 2.1E-06 4.5E-11 86.5 27.8 250 188-450 1441-1697(1710)
100 KOG0548 Molecular co-chaperone 98.9 4E-06 8.7E-11 76.3 26.9 373 32-435 35-470 (539)
101 KOG1914 mRNA cleavage and poly 98.9 4.8E-05 1E-09 69.6 38.2 409 64-482 15-499 (656)
102 KOG0985 Vesicle coat protein c 98.9 1.6E-05 3.5E-10 77.8 31.8 301 135-479 982-1303(1666)
103 PLN02789 farnesyltranstransfer 98.9 2.9E-06 6.4E-11 75.8 25.2 210 249-470 43-268 (320)
104 KOG4340 Uncharacterized conser 98.9 2.7E-06 5.8E-11 71.6 22.9 336 99-453 5-375 (459)
105 TIGR03302 OM_YfiO outer membra 98.9 1E-06 2.3E-11 76.4 21.1 192 241-455 31-234 (235)
106 KOG1127 TPR repeat-containing 98.8 5.7E-06 1.2E-10 80.7 27.1 368 84-463 473-890 (1238)
107 KOG1070 rRNA processing protei 98.8 6E-07 1.3E-11 90.1 20.9 218 245-471 1460-1685(1710)
108 KOG3616 Selective LIM binding 98.8 6.8E-06 1.5E-10 77.6 26.2 195 213-448 738-932 (1636)
109 KOG1128 Uncharacterized conser 98.8 3.2E-07 6.9E-12 86.3 17.4 219 238-483 393-615 (777)
110 KOG1127 TPR repeat-containing 98.8 2.7E-05 5.8E-10 76.2 29.9 161 69-234 492-657 (1238)
111 KOG1128 Uncharacterized conser 98.8 4.5E-07 9.8E-12 85.2 17.1 238 101-359 395-633 (777)
112 PF12854 PPR_1: PPR repeat 98.8 9.6E-09 2.1E-13 57.4 3.8 32 202-233 2-33 (34)
113 KOG3617 WD40 and TPR repeat-co 98.8 3E-05 6.5E-10 74.3 28.7 176 249-449 944-1170(1416)
114 PF12854 PPR_1: PPR repeat 98.8 1E-08 2.2E-13 57.3 3.5 32 344-375 2-33 (34)
115 PRK10370 formate-dependent nit 98.7 2.6E-06 5.5E-11 70.9 19.0 118 292-412 52-172 (198)
116 TIGR03302 OM_YfiO outer membra 98.7 2.1E-06 4.5E-11 74.5 18.8 162 316-485 35-233 (235)
117 KOG3617 WD40 and TPR repeat-co 98.7 2.1E-06 4.5E-11 81.9 19.1 260 103-412 725-995 (1416)
118 PRK14720 transcript cleavage f 98.7 1.1E-05 2.3E-10 80.6 25.0 238 102-395 29-268 (906)
119 KOG3616 Selective LIM binding 98.7 4.7E-05 1E-09 72.2 27.5 149 286-450 739-908 (1636)
120 COG5010 TadD Flp pilus assembl 98.7 6.7E-06 1.5E-10 68.2 19.5 159 176-340 70-228 (257)
121 PRK15359 type III secretion sy 98.7 1.6E-06 3.5E-11 68.1 15.4 107 352-466 27-135 (144)
122 KOG3081 Vesicle coat complex C 98.7 1.6E-05 3.5E-10 66.0 21.4 115 288-412 117-235 (299)
123 KOG1914 mRNA cleavage and poly 98.7 0.00027 5.9E-09 64.9 36.1 414 28-455 15-503 (656)
124 COG5010 TadD Flp pilus assembl 98.7 7.6E-06 1.7E-10 67.9 19.5 158 283-449 70-227 (257)
125 PRK15179 Vi polysaccharide bio 98.6 7.2E-06 1.6E-10 80.9 21.5 131 68-200 85-216 (694)
126 PRK15179 Vi polysaccharide bio 98.6 2.5E-05 5.4E-10 77.2 25.1 134 241-378 84-217 (694)
127 KOG3081 Vesicle coat complex C 98.6 5.2E-05 1.1E-09 63.1 22.7 245 149-412 20-270 (299)
128 PRK10370 formate-dependent nit 98.6 8.5E-06 1.8E-10 67.8 18.2 151 285-456 22-176 (198)
129 COG4783 Putative Zn-dependent 98.6 0.00015 3.3E-09 65.8 26.9 201 222-454 252-455 (484)
130 PRK14720 transcript cleavage f 98.6 2.9E-05 6.3E-10 77.6 23.7 148 171-343 30-178 (906)
131 KOG3060 Uncharacterized conser 98.6 9.5E-05 2.1E-09 61.1 22.5 187 221-412 26-219 (289)
132 PRK15359 type III secretion sy 98.6 3.5E-06 7.5E-11 66.2 14.1 94 72-166 27-121 (144)
133 COG4783 Putative Zn-dependent 98.5 0.00018 3.9E-09 65.3 25.6 197 120-343 253-454 (484)
134 KOG3060 Uncharacterized conser 98.5 9.1E-05 2E-09 61.2 19.9 192 255-456 24-223 (289)
135 TIGR02552 LcrH_SycD type III s 98.5 9.6E-06 2.1E-10 63.4 14.0 95 316-412 19-113 (135)
136 TIGR02552 LcrH_SycD type III s 98.4 2.2E-05 4.7E-10 61.4 14.1 112 336-456 5-117 (135)
137 KOG2053 Mitochondrial inherita 98.4 0.0034 7.3E-08 61.6 39.6 225 46-274 22-257 (932)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.7E-05 7.9E-10 70.3 16.0 120 284-409 174-293 (395)
139 TIGR00756 PPR pentatricopeptid 98.3 1.7E-06 3.6E-11 49.2 4.4 33 139-171 2-34 (35)
140 TIGR00756 PPR pentatricopeptid 98.2 2.8E-06 6.1E-11 48.2 4.6 33 351-383 2-34 (35)
141 PF09976 TPR_21: Tetratricopep 98.2 0.00012 2.5E-09 57.9 15.0 125 282-410 15-144 (145)
142 PF13812 PPR_3: Pentatricopept 98.2 3.1E-06 6.8E-11 47.6 4.3 33 138-170 2-34 (34)
143 PF10037 MRP-S27: Mitochondria 98.2 3.8E-05 8.1E-10 70.5 12.7 120 101-220 63-186 (429)
144 PF13812 PPR_3: Pentatricopept 98.2 4.8E-06 1E-10 46.9 4.6 32 351-382 3-34 (34)
145 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00012 2.6E-09 67.0 15.5 122 248-376 174-295 (395)
146 PF09976 TPR_21: Tetratricopep 98.1 0.00017 3.7E-09 56.9 14.7 126 316-450 14-144 (145)
147 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00016 3.5E-09 54.9 13.6 102 352-456 5-108 (119)
148 KOG2053 Mitochondrial inherita 98.1 0.013 2.7E-07 57.8 39.1 211 20-238 28-256 (932)
149 PF14938 SNAP: Soluble NSF att 98.1 0.00046 1E-08 61.4 18.3 134 322-471 102-249 (282)
150 PF10037 MRP-S27: Mitochondria 98.1 8E-05 1.7E-09 68.4 13.2 119 278-396 65-185 (429)
151 COG3898 Uncharacterized membra 98.0 0.0083 1.8E-07 53.2 27.1 120 250-378 270-392 (531)
152 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00018 3.9E-09 54.6 12.4 97 71-167 4-106 (119)
153 KOG0550 Molecular chaperone (D 98.0 0.00056 1.2E-08 60.8 16.2 87 325-412 260-349 (486)
154 cd00189 TPR Tetratricopeptide 98.0 0.00011 2.5E-09 52.9 10.8 93 354-453 5-97 (100)
155 PRK10866 outer membrane biogen 98.0 0.0079 1.7E-07 51.9 23.1 179 249-451 38-239 (243)
156 KOG0553 TPR repeat-containing 98.0 0.00016 3.6E-09 61.5 12.3 102 323-433 90-191 (304)
157 PF08579 RPM2: Mitochondrial r 98.0 0.00013 2.9E-09 52.2 9.8 79 318-396 29-116 (120)
158 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.015 3.3E-07 52.6 30.5 133 315-456 398-534 (660)
159 PF08579 RPM2: Mitochondrial r 97.9 0.00011 2.3E-09 52.7 8.5 79 141-219 29-116 (120)
160 KOG1130 Predicted G-alpha GTPa 97.9 0.00015 3.4E-09 64.1 11.3 50 145-195 25-78 (639)
161 cd00189 TPR Tetratricopeptide 97.9 0.00021 4.6E-09 51.4 10.7 94 317-412 3-96 (100)
162 PF01535 PPR: PPR repeat; Int 97.9 1.7E-05 3.8E-10 43.4 3.3 29 139-167 2-30 (31)
163 PLN03088 SGT1, suppressor of 97.9 0.00036 7.9E-09 64.1 13.8 90 321-412 9-98 (356)
164 PF06239 ECSIT: Evolutionarily 97.9 0.00024 5.2E-09 57.8 10.9 61 124-184 34-99 (228)
165 PRK15363 pathogenicity island 97.9 0.00063 1.4E-08 52.8 12.6 90 110-200 41-131 (157)
166 PRK02603 photosystem I assembl 97.9 0.00085 1.9E-08 54.7 14.4 62 281-342 37-100 (172)
167 PF01535 PPR: PPR repeat; Int 97.9 2.4E-05 5.1E-10 42.9 3.7 29 351-379 2-30 (31)
168 PLN03088 SGT1, suppressor of 97.9 0.00049 1.1E-08 63.2 14.3 92 286-379 9-100 (356)
169 PF12895 Apc3: Anaphase-promot 97.8 4.2E-05 9.1E-10 53.8 5.1 20 355-374 31-50 (84)
170 PF05843 Suf: Suppressor of fo 97.8 0.00055 1.2E-08 60.6 13.2 132 316-455 3-138 (280)
171 PRK15363 pathogenicity island 97.8 0.00065 1.4E-08 52.7 11.8 90 355-452 41-131 (157)
172 PF12895 Apc3: Anaphase-promot 97.8 0.00013 2.8E-09 51.3 7.5 80 257-338 3-82 (84)
173 KOG2041 WD40 repeat protein [G 97.8 0.02 4.4E-07 54.7 23.4 54 205-268 850-903 (1189)
174 KOG0550 Molecular chaperone (D 97.8 0.0021 4.7E-08 57.2 15.9 106 359-471 259-371 (486)
175 KOG0553 TPR repeat-containing 97.8 0.00042 9E-09 59.1 11.2 98 289-391 91-189 (304)
176 CHL00033 ycf3 photosystem I as 97.7 0.00093 2E-08 54.3 12.9 96 316-412 37-141 (168)
177 KOG1130 Predicted G-alpha GTPa 97.7 0.00028 6.1E-09 62.5 10.0 285 181-482 26-342 (639)
178 PF13525 YfiO: Outer membrane 97.7 0.012 2.7E-07 49.3 19.8 173 249-443 11-197 (203)
179 PRK10153 DNA-binding transcrip 97.7 0.0024 5.3E-08 61.4 17.3 133 277-412 335-481 (517)
180 PRK02603 photosystem I assembl 97.7 0.0025 5.3E-08 52.0 14.7 95 243-338 35-130 (172)
181 PF13525 YfiO: Outer membrane 97.7 0.017 3.6E-07 48.5 20.0 176 282-471 8-192 (203)
182 PF05843 Suf: Suppressor of fo 97.7 0.0013 2.8E-08 58.2 13.7 130 209-342 3-135 (280)
183 PF14938 SNAP: Soluble NSF att 97.7 0.0057 1.2E-07 54.4 17.6 60 393-455 205-268 (282)
184 COG4235 Cytochrome c biogenesi 97.7 0.0035 7.5E-08 53.9 15.2 99 312-412 154-255 (287)
185 CHL00033 ycf3 photosystem I as 97.7 0.0016 3.5E-08 52.9 13.0 64 245-308 37-101 (168)
186 PF14559 TPR_19: Tetratricopep 97.7 0.00025 5.4E-09 47.5 6.8 62 80-142 2-63 (68)
187 PRK10866 outer membrane biogen 97.6 0.018 4E-07 49.6 19.7 174 284-482 37-239 (243)
188 COG4700 Uncharacterized protei 97.6 0.0088 1.9E-07 47.3 15.6 101 241-342 87-188 (251)
189 KOG2796 Uncharacterized conser 97.6 0.018 3.9E-07 48.4 18.0 130 282-412 180-314 (366)
190 PF06239 ECSIT: Evolutionarily 97.6 0.001 2.2E-08 54.2 10.6 88 312-399 45-153 (228)
191 PF13432 TPR_16: Tetratricopep 97.6 0.00034 7.3E-09 46.3 6.5 56 356-412 4-59 (65)
192 PF12688 TPR_5: Tetratrico pep 97.6 0.0064 1.4E-07 45.5 13.8 91 322-412 9-103 (120)
193 PRK10153 DNA-binding transcrip 97.6 0.0069 1.5E-07 58.4 17.5 139 309-456 332-485 (517)
194 PF03704 BTAD: Bacterial trans 97.5 0.0069 1.5E-07 47.9 14.8 77 351-428 64-140 (146)
195 PF13414 TPR_11: TPR repeat; P 97.5 0.00035 7.5E-09 46.9 6.4 63 349-412 3-66 (69)
196 PF14559 TPR_19: Tetratricopep 97.5 0.00038 8.3E-09 46.5 6.6 51 361-412 3-53 (68)
197 PF13414 TPR_11: TPR repeat; P 97.5 0.00051 1.1E-08 46.1 7.2 66 383-455 2-69 (69)
198 KOG2041 WD40 repeat protein [G 97.5 0.018 3.9E-07 55.1 19.1 202 169-409 689-903 (1189)
199 PF04840 Vps16_C: Vps16, C-ter 97.5 0.077 1.7E-06 47.7 26.6 105 282-406 180-284 (319)
200 PRK10803 tol-pal system protei 97.4 0.0043 9.4E-08 53.9 13.1 102 352-456 146-249 (263)
201 PRK11906 transcriptional regul 97.4 0.01 2.2E-07 54.6 15.4 145 329-481 273-433 (458)
202 COG3898 Uncharacterized membra 97.4 0.09 1.9E-06 47.0 30.6 294 139-453 84-392 (531)
203 COG4235 Cytochrome c biogenesi 97.4 0.013 2.9E-07 50.5 14.9 121 266-392 145-268 (287)
204 COG4700 Uncharacterized protei 97.3 0.052 1.1E-06 43.2 18.1 134 203-339 85-218 (251)
205 PF12688 TPR_5: Tetratrico pep 97.3 0.022 4.8E-07 42.6 13.7 90 287-376 9-102 (120)
206 PF13432 TPR_16: Tetratricopep 97.3 0.0015 3.3E-08 43.1 6.9 56 251-308 5-60 (65)
207 KOG2796 Uncharacterized conser 97.3 0.046 1E-06 46.0 16.3 134 174-310 179-317 (366)
208 PF13371 TPR_9: Tetratricopept 97.2 0.0026 5.6E-08 43.2 7.8 55 357-412 3-57 (73)
209 PF13424 TPR_12: Tetratricopep 97.2 0.0017 3.7E-08 44.8 6.8 67 385-452 6-74 (78)
210 KOG1538 Uncharacterized conser 97.2 0.038 8.3E-07 52.5 16.9 37 194-233 622-658 (1081)
211 KOG2114 Vacuolar assembly/sort 97.2 0.08 1.7E-06 52.1 19.4 89 68-162 363-456 (933)
212 PRK10803 tol-pal system protei 97.1 0.0094 2E-07 51.9 12.1 95 72-166 146-246 (263)
213 PF04840 Vps16_C: Vps16, C-ter 97.1 0.19 4.1E-06 45.3 28.6 113 315-452 178-290 (319)
214 PF13281 DUF4071: Domain of un 97.1 0.19 4.1E-06 45.7 20.1 28 385-412 306-333 (374)
215 PF03704 BTAD: Bacterial trans 97.0 0.0034 7.3E-08 49.6 7.2 70 139-209 64-138 (146)
216 KOG2280 Vacuolar assembly/sort 97.0 0.43 9.4E-06 46.6 25.1 324 63-409 426-795 (829)
217 COG4105 ComL DNA uptake lipopr 96.9 0.21 4.6E-06 42.4 19.9 183 252-456 43-236 (254)
218 PF12921 ATP13: Mitochondrial 96.9 0.015 3.3E-07 44.0 9.6 51 418-468 46-99 (126)
219 PF12921 ATP13: Mitochondrial 96.8 0.015 3.3E-07 44.0 9.2 97 137-253 2-98 (126)
220 KOG1538 Uncharacterized conser 96.8 0.14 3E-06 48.9 17.1 261 169-456 553-849 (1081)
221 PF13371 TPR_9: Tetratricopept 96.8 0.0082 1.8E-07 40.6 7.3 57 78-135 4-60 (73)
222 PF07079 DUF1347: Protein of u 96.6 0.56 1.2E-05 43.1 30.7 138 79-219 16-179 (549)
223 KOG1258 mRNA processing protei 96.6 0.7 1.5E-05 44.1 31.9 132 32-166 44-180 (577)
224 KOG4555 TPR repeat-containing 96.6 0.055 1.2E-06 40.2 10.2 94 358-456 52-147 (175)
225 PRK15331 chaperone protein Sic 96.6 0.091 2E-06 41.3 12.0 85 115-200 48-133 (165)
226 COG4105 ComL DNA uptake lipopr 96.5 0.42 9.2E-06 40.6 20.0 53 429-481 172-230 (254)
227 KOG3941 Intermediate in Toll s 96.4 0.028 6.1E-07 47.8 9.0 99 124-222 54-173 (406)
228 PF13424 TPR_12: Tetratricopep 96.4 0.016 3.4E-07 39.9 6.6 63 244-306 6-73 (78)
229 COG3118 Thioredoxin domain-con 96.4 0.54 1.2E-05 40.8 16.6 49 116-164 146-195 (304)
230 KOG1585 Protein required for f 96.4 0.32 7E-06 40.7 14.7 209 70-303 32-251 (308)
231 KOG1920 IkappaB kinase complex 96.4 1.5 3.3E-05 45.5 27.5 329 74-451 682-1053(1265)
232 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.091 2E-06 48.5 12.5 63 314-378 75-141 (453)
233 COG3118 Thioredoxin domain-con 96.3 0.62 1.3E-05 40.4 16.6 161 57-222 122-287 (304)
234 PF08631 SPO22: Meiosis protei 96.3 0.7 1.5E-05 41.0 24.9 228 218-451 4-273 (278)
235 COG4649 Uncharacterized protei 96.3 0.35 7.6E-06 38.2 13.7 132 68-200 58-195 (221)
236 smart00299 CLH Clathrin heavy 96.3 0.36 7.8E-06 37.7 14.8 85 318-410 11-95 (140)
237 PF10300 DUF3808: Protein of u 96.3 0.33 7.3E-06 46.6 16.7 164 210-377 191-375 (468)
238 PF13281 DUF4071: Domain of un 96.3 0.89 1.9E-05 41.6 20.2 35 422-456 303-337 (374)
239 COG5107 RNA14 Pre-mRNA 3'-end 96.2 0.95 2.1E-05 41.7 30.6 405 64-483 37-530 (660)
240 PF04053 Coatomer_WDAD: Coatom 96.2 0.067 1.4E-06 50.5 11.5 28 206-233 346-373 (443)
241 COG1729 Uncharacterized protei 96.2 0.1 2.2E-06 44.6 11.3 102 351-456 144-247 (262)
242 smart00299 CLH Clathrin heavy 96.1 0.22 4.8E-06 38.8 12.5 125 141-290 11-136 (140)
243 PRK15331 chaperone protein Sic 96.1 0.098 2.1E-06 41.1 10.0 84 255-341 49-132 (165)
244 COG1729 Uncharacterized protei 96.1 0.14 3E-06 43.8 11.6 95 71-166 144-244 (262)
245 COG3629 DnrI DNA-binding trans 96.1 0.079 1.7E-06 46.0 10.2 83 351-434 155-237 (280)
246 KOG2280 Vacuolar assembly/sort 96.0 1.7 3.8E-05 42.7 27.4 100 350-471 685-784 (829)
247 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.1 2.2E-06 48.3 11.0 63 348-412 74-140 (453)
248 PF13428 TPR_14: Tetratricopep 95.9 0.025 5.3E-07 33.7 4.8 39 426-464 3-42 (44)
249 KOG0543 FKBP-type peptidyl-pro 95.9 0.24 5.1E-06 44.8 12.7 94 385-484 258-355 (397)
250 PF13170 DUF4003: Protein of u 95.9 1.2 2.7E-05 39.7 21.3 159 260-421 79-254 (297)
251 KOG0543 FKBP-type peptidyl-pro 95.8 0.17 3.7E-06 45.7 11.4 96 350-453 258-355 (397)
252 KOG2610 Uncharacterized conser 95.8 0.26 5.6E-06 43.3 11.9 154 291-449 115-272 (491)
253 COG0457 NrfG FOG: TPR repeat [ 95.7 1.1 2.4E-05 38.2 27.7 203 244-455 60-267 (291)
254 PF04184 ST7: ST7 protein; In 95.7 1 2.2E-05 42.2 15.9 65 207-271 259-323 (539)
255 PF07079 DUF1347: Protein of u 95.6 1.9 4.1E-05 39.9 35.2 119 326-452 391-523 (549)
256 PF13428 TPR_14: Tetratricopep 95.6 0.061 1.3E-06 31.9 5.6 39 351-390 3-41 (44)
257 KOG2114 Vacuolar assembly/sort 95.6 2.9 6.3E-05 41.8 23.2 179 68-269 333-516 (933)
258 KOG3941 Intermediate in Toll s 95.5 0.26 5.7E-06 42.1 10.8 70 330-399 88-173 (406)
259 KOG4555 TPR repeat-containing 95.5 0.63 1.4E-05 34.8 11.4 53 253-307 53-105 (175)
260 PF10300 DUF3808: Protein of u 95.5 1.7 3.7E-05 41.9 17.8 162 249-414 194-377 (468)
261 PF04053 Coatomer_WDAD: Coatom 95.5 0.28 6.2E-06 46.4 12.3 162 249-450 267-428 (443)
262 COG0457 NrfG FOG: TPR repeat [ 95.4 1.5 3.2E-05 37.4 26.8 63 315-378 203-265 (291)
263 COG4649 Uncharacterized protei 95.4 0.94 2E-05 35.9 12.6 23 355-377 173-195 (221)
264 PRK11906 transcriptional regul 95.3 1.7 3.7E-05 40.6 16.0 117 223-342 274-400 (458)
265 KOG2610 Uncharacterized conser 95.2 0.6 1.3E-05 41.1 12.3 156 253-412 113-275 (491)
266 PF09613 HrpB1_HrpK: Bacterial 95.1 1.3 2.8E-05 34.8 13.2 51 116-166 22-73 (160)
267 PF02259 FAT: FAT domain; Int 95.0 2.9 6.3E-05 38.7 21.9 70 312-381 144-216 (352)
268 PF13512 TPR_18: Tetratricopep 95.0 0.91 2E-05 35.0 11.4 74 111-184 17-94 (142)
269 PF04184 ST7: ST7 protein; In 94.8 3.6 7.8E-05 38.8 17.7 58 353-410 263-321 (539)
270 PF13512 TPR_18: Tetratricopep 94.7 1.3 2.8E-05 34.1 11.7 24 319-342 52-75 (142)
271 COG3629 DnrI DNA-binding trans 94.7 0.3 6.4E-06 42.6 9.2 78 138-216 154-236 (280)
272 KOG1941 Acetylcholine receptor 94.7 3.1 6.8E-05 37.3 18.3 55 320-374 128-187 (518)
273 KOG1941 Acetylcholine receptor 94.7 1.2 2.6E-05 39.8 12.7 127 249-375 128-272 (518)
274 PF00637 Clathrin: Region in C 94.5 0.0065 1.4E-07 47.8 -1.1 135 32-187 6-140 (143)
275 PF09205 DUF1955: Domain of un 94.5 1.5 3.2E-05 33.0 11.5 136 80-239 13-151 (161)
276 KOG1920 IkappaB kinase complex 94.2 8.7 0.00019 40.4 19.9 28 70-97 791-820 (1265)
277 PF09613 HrpB1_HrpK: Bacterial 94.2 2.2 4.7E-05 33.7 11.9 72 77-149 18-89 (160)
278 PF09205 DUF1955: Domain of un 93.9 2.1 4.6E-05 32.3 14.3 54 358-412 95-148 (161)
279 PF00637 Clathrin: Region in C 93.7 0.0021 4.6E-08 50.6 -5.3 53 144-196 14-66 (143)
280 PF07035 Mic1: Colon cancer-as 93.7 3 6.4E-05 33.4 14.9 134 193-342 15-148 (167)
281 PF10602 RPN7: 26S proteasome 93.5 1.4 3.1E-05 35.8 10.6 59 317-375 39-99 (177)
282 PF13176 TPR_7: Tetratricopept 93.3 0.2 4.3E-06 28.1 3.9 27 386-412 1-27 (36)
283 KOG1258 mRNA processing protei 93.3 8.3 0.00018 37.2 29.3 407 67-489 43-512 (577)
284 PRK15180 Vi polysaccharide bio 93.2 6.4 0.00014 36.8 14.8 129 249-381 295-423 (831)
285 PF13431 TPR_17: Tetratricopep 93.1 0.086 1.9E-06 29.2 2.1 30 128-157 3-33 (34)
286 PF10602 RPN7: 26S proteasome 93.0 1.7 3.7E-05 35.4 10.2 62 209-271 38-101 (177)
287 PF00515 TPR_1: Tetratricopept 92.9 0.28 6.1E-06 26.9 4.1 28 385-412 2-29 (34)
288 COG1747 Uncharacterized N-term 92.9 8.7 0.00019 36.4 20.8 167 102-273 64-235 (711)
289 PF13431 TPR_17: Tetratricopep 92.9 0.18 3.8E-06 27.9 3.1 32 372-404 2-33 (34)
290 PF02284 COX5A: Cytochrome c o 92.8 1.1 2.3E-05 32.0 7.4 61 402-467 28-89 (108)
291 PF04097 Nic96: Nup93/Nic96; 92.8 10 0.00022 38.1 17.4 83 215-303 266-351 (613)
292 KOG0890 Protein kinase of the 92.8 22 0.00047 40.7 25.3 315 110-455 1389-1733(2382)
293 KOG1550 Extracellular protein 92.6 12 0.00026 37.2 24.7 277 153-456 228-541 (552)
294 PF08631 SPO22: Meiosis protei 92.5 7.4 0.00016 34.6 26.7 16 359-374 256-271 (278)
295 PF13176 TPR_7: Tetratricopept 92.4 0.34 7.4E-06 27.1 4.0 24 246-269 2-25 (36)
296 PF07035 Mic1: Colon cancer-as 92.4 4.8 0.0001 32.2 15.1 135 157-307 14-148 (167)
297 cd00923 Cyt_c_Oxidase_Va Cytoc 92.3 1.2 2.5E-05 31.4 7.0 63 399-466 22-85 (103)
298 KOG1464 COP9 signalosome, subu 92.2 7 0.00015 33.6 17.1 211 201-412 20-259 (440)
299 PRK09687 putative lyase; Provi 92.0 8.4 0.00018 34.2 24.5 233 205-467 35-277 (280)
300 PF13929 mRNA_stabil: mRNA sta 92.0 8 0.00017 33.9 15.2 113 119-231 143-262 (292)
301 TIGR02561 HrpB1_HrpK type III 92.0 4.8 0.0001 31.3 12.1 19 148-166 55-73 (153)
302 KOG0276 Vesicle coat complex C 91.9 8.4 0.00018 37.3 14.2 26 208-233 667-692 (794)
303 KOG1585 Protein required for f 91.8 7.3 0.00016 33.1 16.6 148 282-448 94-251 (308)
304 COG4785 NlpI Lipoprotein NlpI, 91.7 6.8 0.00015 32.6 17.0 183 114-308 75-266 (297)
305 KOG4234 TPR repeat-containing 91.6 4.7 0.0001 33.0 10.7 53 359-412 144-196 (271)
306 KOG4234 TPR repeat-containing 91.5 1.4 3E-05 35.9 7.6 93 357-456 103-200 (271)
307 PF07719 TPR_2: Tetratricopept 91.4 0.55 1.2E-05 25.6 4.1 27 386-412 3-29 (34)
308 COG2976 Uncharacterized protei 91.4 2.5 5.5E-05 34.4 9.0 130 69-202 54-189 (207)
309 KOG4570 Uncharacterized conser 91.3 7.9 0.00017 34.2 12.5 97 314-412 64-163 (418)
310 COG3947 Response regulator con 91.2 9.6 0.00021 33.3 13.2 76 351-427 281-356 (361)
311 PF13929 mRNA_stabil: mRNA sta 91.2 8.7 0.00019 33.6 12.7 59 277-335 200-259 (292)
312 COG4455 ImpE Protein of avirul 91.1 2 4.4E-05 35.5 8.4 76 317-393 4-81 (273)
313 KOG4570 Uncharacterized conser 91.1 2.9 6.3E-05 36.7 9.7 99 101-201 61-164 (418)
314 KOG2063 Vacuolar assembly/sort 90.8 22 0.00049 36.8 20.6 186 282-470 507-745 (877)
315 PF06552 TOM20_plant: Plant sp 90.7 2.5 5.3E-05 34.0 8.4 49 420-468 64-124 (186)
316 PF11207 DUF2989: Protein of u 90.6 2.9 6.2E-05 34.4 8.9 82 359-444 117-198 (203)
317 PF00515 TPR_1: Tetratricopept 90.4 0.79 1.7E-05 25.0 4.1 32 425-456 2-33 (34)
318 KOG0276 Vesicle coat complex C 89.8 3.1 6.8E-05 40.0 9.6 99 218-339 648-746 (794)
319 TIGR02561 HrpB1_HrpK type III 89.8 8 0.00017 30.1 11.3 57 80-137 21-77 (153)
320 PF07719 TPR_2: Tetratricopept 89.7 0.96 2.1E-05 24.6 4.1 31 425-455 2-32 (34)
321 COG4455 ImpE Protein of avirul 89.6 2.7 5.8E-05 34.9 7.9 75 71-146 3-81 (273)
322 cd00923 Cyt_c_Oxidase_Va Cytoc 89.4 4.4 9.6E-05 28.6 7.7 46 225-271 25-70 (103)
323 PF13170 DUF4003: Protein of u 89.1 16 0.00035 32.7 19.8 129 297-432 80-225 (297)
324 PRK11619 lytic murein transgly 88.9 28 0.00061 35.2 29.4 317 113-452 42-374 (644)
325 KOG2066 Vacuolar assembly/sort 88.8 28 0.00061 35.1 25.7 152 111-271 363-533 (846)
326 PF13374 TPR_10: Tetratricopep 88.5 1.2 2.6E-05 25.6 4.2 30 385-414 3-32 (42)
327 COG4785 NlpI Lipoprotein NlpI, 88.3 14 0.0003 30.9 15.0 186 252-456 74-269 (297)
328 KOG0890 Protein kinase of the 88.2 56 0.0012 37.7 27.9 146 78-231 1392-1542(2382)
329 PF02259 FAT: FAT domain; Int 88.0 22 0.00047 32.8 23.1 66 242-307 145-212 (352)
330 PF10345 Cohesin_load: Cohesin 88.0 32 0.0007 34.7 35.5 408 71-482 61-604 (608)
331 COG1747 Uncharacterized N-term 87.8 26 0.00056 33.5 23.2 179 136-324 65-249 (711)
332 cd08819 CARD_MDA5_2 Caspase ac 87.7 5.4 0.00012 27.6 7.2 66 88-157 21-86 (88)
333 PF13181 TPR_8: Tetratricopept 87.5 1.2 2.7E-05 24.2 3.6 27 386-412 3-29 (34)
334 KOG4648 Uncharacterized conser 87.4 1.7 3.6E-05 38.6 5.8 93 356-456 104-197 (536)
335 PF02284 COX5A: Cytochrome c o 87.2 8.9 0.00019 27.5 9.6 49 225-274 28-76 (108)
336 KOG4077 Cytochrome c oxidase, 87.0 5 0.00011 29.9 7.1 60 403-467 68-128 (149)
337 COG2976 Uncharacterized protei 86.5 17 0.00036 29.9 12.5 143 298-455 38-190 (207)
338 KOG1464 COP9 signalosome, subu 86.4 21 0.00045 30.9 18.9 209 166-375 20-257 (440)
339 KOG1550 Extracellular protein 86.1 38 0.00083 33.7 25.0 273 120-412 228-537 (552)
340 PF13174 TPR_6: Tetratricopept 86.0 1.2 2.6E-05 23.9 3.0 26 430-455 6-31 (33)
341 KOG0991 Replication factor C, 85.6 15 0.00033 31.1 10.1 142 317-471 133-286 (333)
342 PF13374 TPR_10: Tetratricopep 85.4 2.4 5.1E-05 24.3 4.3 28 138-165 3-30 (42)
343 PF07163 Pex26: Pex26 protein; 85.1 13 0.00027 32.4 9.6 87 286-372 90-181 (309)
344 PF10345 Cohesin_load: Cohesin 84.9 47 0.001 33.6 31.0 373 74-452 105-605 (608)
345 COG2909 MalT ATP-dependent tra 84.5 53 0.0011 33.9 28.7 226 148-374 426-684 (894)
346 PF11207 DUF2989: Protein of u 84.5 13 0.00027 30.8 9.1 72 120-192 122-198 (203)
347 KOG4648 Uncharacterized conser 84.5 7.6 0.00016 34.7 8.3 54 288-342 106-159 (536)
348 KOG0403 Neoplastic transformat 84.4 36 0.00079 31.9 17.1 24 141-164 218-241 (645)
349 PF13174 TPR_6: Tetratricopept 84.3 1.3 2.9E-05 23.7 2.7 16 116-131 12-27 (33)
350 PF10579 Rapsyn_N: Rapsyn N-te 84.1 3.8 8.3E-05 27.7 5.0 48 396-447 18-66 (80)
351 PF09477 Type_III_YscG: Bacter 84.0 14 0.0003 26.8 8.2 82 81-167 18-99 (116)
352 PF06552 TOM20_plant: Plant sp 83.8 13 0.00029 30.0 8.7 62 366-435 52-124 (186)
353 PRK15180 Vi polysaccharide bio 83.3 42 0.00091 31.8 25.8 125 41-168 297-422 (831)
354 PRK09687 putative lyase; Provi 82.8 34 0.00074 30.4 28.1 78 68-149 36-117 (280)
355 KOG0686 COP9 signalosome, subu 82.4 42 0.0009 31.1 13.7 95 138-234 151-256 (466)
356 PF13181 TPR_8: Tetratricopept 82.3 3.1 6.8E-05 22.5 3.7 31 425-455 2-32 (34)
357 PF04097 Nic96: Nup93/Nic96; 81.5 64 0.0014 32.6 21.7 89 249-343 264-356 (613)
358 PHA02875 ankyrin repeat protei 81.4 50 0.0011 31.4 15.6 15 114-128 9-23 (413)
359 PF07575 Nucleopor_Nup85: Nup8 81.1 63 0.0014 32.3 19.0 145 220-376 310-465 (566)
360 COG5159 RPN6 26S proteasome re 80.9 38 0.00082 29.7 11.5 19 429-447 130-148 (421)
361 COG2909 MalT ATP-dependent tra 80.7 74 0.0016 32.9 29.5 223 183-409 426-684 (894)
362 PF07163 Pex26: Pex26 protein; 80.1 24 0.00053 30.8 9.5 87 74-160 88-181 (309)
363 TIGR02508 type_III_yscG type I 79.8 20 0.00043 25.7 7.5 80 83-167 19-98 (115)
364 KOG2396 HAT (Half-A-TPR) repea 79.7 59 0.0013 31.1 33.4 77 65-142 101-179 (568)
365 KOG2300 Uncharacterized conser 79.1 60 0.0013 30.9 30.2 362 82-449 60-510 (629)
366 PF07721 TPR_4: Tetratricopept 78.5 4.4 9.5E-05 20.5 3.1 18 143-160 7-24 (26)
367 TIGR03504 FimV_Cterm FimV C-te 77.8 3.5 7.7E-05 24.3 2.9 24 320-343 5-28 (44)
368 TIGR03504 FimV_Cterm FimV C-te 77.3 5.4 0.00012 23.6 3.6 26 354-379 4-29 (44)
369 KOG2063 Vacuolar assembly/sort 77.2 1E+02 0.0022 32.4 17.5 167 246-412 507-712 (877)
370 PF10579 Rapsyn_N: Rapsyn N-te 76.9 9.8 0.00021 25.8 5.1 45 291-335 18-64 (80)
371 PRK10941 hypothetical protein; 76.8 37 0.00081 29.9 10.2 78 353-435 185-262 (269)
372 KOG2471 TPR repeat-containing 75.1 80 0.0017 30.2 14.5 104 326-436 252-381 (696)
373 KOG2062 26S proteasome regulat 74.4 1E+02 0.0022 31.2 25.7 120 358-483 510-634 (929)
374 PF11817 Foie-gras_1: Foie gra 74.2 22 0.00047 31.0 8.2 64 387-450 181-244 (247)
375 KOG2034 Vacuolar sorting prote 73.3 1.2E+02 0.0026 31.5 27.1 257 76-364 365-643 (911)
376 KOG4077 Cytochrome c oxidase, 73.3 32 0.0007 25.9 7.3 48 226-274 68-115 (149)
377 PF10366 Vps39_1: Vacuolar sor 73.2 31 0.00067 25.4 7.5 26 282-307 42-67 (108)
378 PF11846 DUF3366: Domain of un 72.7 22 0.00047 29.5 7.6 36 420-455 140-175 (193)
379 PRK10941 hypothetical protein; 72.5 64 0.0014 28.5 10.5 74 247-322 185-259 (269)
380 KOG4507 Uncharacterized conser 72.3 46 0.001 32.5 10.0 85 256-342 620-704 (886)
381 COG3947 Response regulator con 72.0 71 0.0015 28.3 15.9 58 425-482 280-340 (361)
382 PF08311 Mad3_BUB1_I: Mad3/BUB 71.9 41 0.0009 25.5 9.2 38 442-479 81-123 (126)
383 PF04190 DUF410: Protein of un 71.7 70 0.0015 28.1 12.3 86 324-409 20-115 (260)
384 PF12862 Apc5: Anaphase-promot 70.9 23 0.0005 25.1 6.4 22 431-452 48-69 (94)
385 KOG1586 Protein required for f 70.8 66 0.0014 27.5 18.3 18 217-234 24-41 (288)
386 KOG4507 Uncharacterized conser 70.7 25 0.00054 34.1 8.0 87 292-379 620-706 (886)
387 smart00386 HAT HAT (Half-A-TPR 70.6 11 0.00025 19.7 3.8 28 438-465 1-29 (33)
388 PF10255 Paf67: RNA polymerase 69.8 85 0.0018 29.6 11.1 64 208-271 123-192 (404)
389 PHA02875 ankyrin repeat protei 69.7 1E+02 0.0022 29.2 13.3 16 366-381 297-312 (413)
390 smart00028 TPR Tetratricopepti 69.0 9 0.0002 19.5 3.3 27 386-412 3-29 (34)
391 PF08424 NRDE-2: NRDE-2, neces 67.0 1E+02 0.0022 28.1 17.2 116 296-413 48-183 (321)
392 KOG2471 TPR repeat-containing 66.5 1.3E+02 0.0027 29.0 14.1 112 359-471 250-383 (696)
393 PF13934 ELYS: Nuclear pore co 65.4 87 0.0019 26.8 12.6 77 116-198 90-166 (226)
394 KOG3807 Predicted membrane pro 64.4 1.1E+02 0.0024 27.6 11.0 63 211-273 279-341 (556)
395 PF14689 SPOB_a: Sensor_kinase 64.4 15 0.00032 23.7 3.8 24 142-165 28-51 (62)
396 PF08424 NRDE-2: NRDE-2, neces 63.6 1.2E+02 0.0026 27.7 17.8 124 330-455 47-185 (321)
397 KOG0292 Vesicle coat complex C 63.5 44 0.00096 34.3 8.4 132 112-272 651-782 (1202)
398 PF11846 DUF3366: Domain of un 63.5 38 0.00082 28.1 7.2 35 239-273 140-174 (193)
399 COG0735 Fur Fe2+/Zn2+ uptake r 63.2 52 0.0011 25.8 7.4 63 56-119 8-70 (145)
400 cd08819 CARD_MDA5_2 Caspase ac 62.6 50 0.0011 23.0 6.7 36 255-296 48-83 (88)
401 PF11663 Toxin_YhaV: Toxin wit 62.4 11 0.00025 28.5 3.4 32 149-182 107-138 (140)
402 KOG4642 Chaperone-dependent E3 62.0 1E+02 0.0022 26.5 11.4 83 289-375 20-104 (284)
403 PF14853 Fis1_TPR_C: Fis1 C-te 61.6 36 0.00079 21.1 5.2 23 390-412 7-29 (53)
404 PF11848 DUF3368: Domain of un 61.2 32 0.00069 20.8 4.7 34 79-112 12-45 (48)
405 PF13762 MNE1: Mitochondrial s 60.4 80 0.0017 24.7 10.3 81 352-437 42-128 (145)
406 PF11848 DUF3368: Domain of un 60.3 35 0.00077 20.6 4.7 31 184-214 14-44 (48)
407 KOG1114 Tripeptidyl peptidase 60.2 2.3E+02 0.005 29.9 14.4 84 400-488 1212-1299(1304)
408 PF04910 Tcf25: Transcriptiona 59.8 1.5E+02 0.0032 27.6 15.4 54 357-410 111-165 (360)
409 KOG2422 Uncharacterized conser 59.4 1.9E+02 0.004 28.6 12.3 76 77-152 350-431 (665)
410 PF14689 SPOB_a: Sensor_kinase 59.3 38 0.00081 21.8 5.0 31 422-452 21-51 (62)
411 KOG1586 Protein required for f 58.9 1.2E+02 0.0025 26.1 18.8 25 322-346 162-186 (288)
412 KOG0376 Serine-threonine phosp 58.8 31 0.00067 32.6 6.2 22 357-378 46-67 (476)
413 KOG0686 COP9 signalosome, subu 58.5 1.6E+02 0.0035 27.5 13.6 61 246-306 153-214 (466)
414 PF09986 DUF2225: Uncharacteri 58.4 1.1E+02 0.0025 25.8 10.0 69 386-456 120-197 (214)
415 PF04190 DUF410: Protein of un 57.6 1.3E+02 0.0029 26.4 18.2 28 241-268 88-115 (260)
416 PF14853 Fis1_TPR_C: Fis1 C-te 57.3 42 0.00091 20.8 4.7 28 429-456 6-33 (53)
417 PF11663 Toxin_YhaV: Toxin wit 56.9 11 0.00025 28.6 2.6 25 466-490 104-130 (140)
418 COG0735 Fur Fe2+/Zn2+ uptake r 56.6 95 0.0021 24.3 7.9 61 160-221 9-69 (145)
419 TIGR02508 type_III_yscG type I 56.1 75 0.0016 23.0 7.1 53 393-456 48-100 (115)
420 KOG3364 Membrane protein invol 56.0 89 0.0019 24.1 7.0 71 66-136 29-103 (149)
421 PF14669 Asp_Glu_race_2: Putat 55.5 1.2E+02 0.0025 25.1 13.1 56 318-373 136-205 (233)
422 PF12862 Apc5: Anaphase-promot 55.5 72 0.0016 22.6 7.6 24 249-272 47-70 (94)
423 PRK09857 putative transposase; 55.5 77 0.0017 28.4 8.1 62 427-488 209-273 (292)
424 KOG1498 26S proteasome regulat 54.4 1.8E+02 0.004 27.0 14.7 88 248-343 136-241 (439)
425 KOG0376 Serine-threonine phosp 53.5 35 0.00076 32.3 5.6 105 357-469 12-117 (476)
426 KOG3636 Uncharacterized conser 52.7 2.1E+02 0.0045 27.1 14.9 168 120-291 71-272 (669)
427 PRK11619 lytic murein transgly 52.7 2.7E+02 0.0059 28.4 38.0 362 104-489 99-510 (644)
428 KOG1308 Hsp70-interacting prot 52.1 21 0.00045 32.2 3.8 83 327-412 127-210 (377)
429 PF10366 Vps39_1: Vacuolar sor 51.2 97 0.0021 22.8 9.5 26 387-412 42-67 (108)
430 PF08311 Mad3_BUB1_I: Mad3/BUB 50.9 1.1E+02 0.0023 23.3 8.0 41 122-162 81-124 (126)
431 COG5108 RPO41 Mitochondrial DN 50.4 1.3E+02 0.0029 30.1 9.0 76 283-361 32-115 (1117)
432 KOG4279 Serine/threonine prote 50.3 2.8E+02 0.0061 28.4 11.2 24 433-456 375-398 (1226)
433 PF09454 Vps23_core: Vps23 cor 50.2 37 0.00079 22.2 3.8 51 346-397 5-55 (65)
434 PF00244 14-3-3: 14-3-3 protei 50.0 1.7E+02 0.0037 25.3 11.2 184 248-452 6-197 (236)
435 PRK14136 recX recombination re 49.8 1.9E+02 0.0042 25.9 11.1 11 176-186 279-289 (309)
436 PRK10564 maltose regulon perip 49.3 29 0.00063 30.7 4.3 35 135-169 254-289 (303)
437 PRK11639 zinc uptake transcrip 49.1 1.2E+02 0.0026 24.5 7.6 57 62-119 19-75 (169)
438 COG5159 RPN6 26S proteasome re 49.0 1.9E+02 0.0042 25.6 19.7 53 143-195 9-68 (421)
439 KOG1308 Hsp70-interacting prot 48.0 14 0.00031 33.1 2.3 92 116-208 126-218 (377)
440 PF07575 Nucleopor_Nup85: Nup8 48.0 46 0.001 33.3 6.1 33 219-252 507-539 (566)
441 COG2178 Predicted RNA-binding 47.4 1.6E+02 0.0035 24.3 8.5 20 435-454 132-151 (204)
442 KOG4279 Serine/threonine prote 46.9 3.4E+02 0.0074 27.9 14.4 122 227-350 183-321 (1226)
443 PRK10564 maltose regulon perip 46.8 45 0.00097 29.6 5.0 29 353-381 261-289 (303)
444 PF09670 Cas_Cas02710: CRISPR- 46.7 2.5E+02 0.0055 26.4 11.9 55 288-343 140-198 (379)
445 PF09868 DUF2095: Uncharacteri 46.1 85 0.0018 23.1 5.4 40 74-114 66-105 (128)
446 smart00843 Ftsk_gamma This dom 46.1 35 0.00076 22.1 3.2 28 459-486 20-48 (63)
447 PF10255 Paf67: RNA polymerase 45.9 2.3E+02 0.0049 26.9 9.6 58 284-341 127-191 (404)
448 PF02847 MA3: MA3 domain; Int 45.6 1.1E+02 0.0024 22.4 6.6 23 353-375 6-28 (113)
449 PF11817 Foie-gras_1: Foie gra 45.4 72 0.0016 27.7 6.3 57 177-233 183-244 (247)
450 PRK09857 putative transposase; 45.1 2.1E+02 0.0046 25.7 9.1 66 317-383 209-274 (292)
451 KOG4642 Chaperone-dependent E3 45.0 2E+02 0.0044 24.8 11.0 18 248-265 49-66 (284)
452 PHA02537 M terminase endonucle 44.7 2E+02 0.0044 24.6 10.0 29 282-310 86-114 (230)
453 KOG4567 GTPase-activating prot 44.1 2.4E+02 0.0052 25.4 10.2 43 228-271 264-306 (370)
454 KOG2659 LisH motif-containing 43.6 2.1E+02 0.0045 24.4 12.1 101 203-307 22-131 (228)
455 PRK09462 fur ferric uptake reg 43.5 1.6E+02 0.0034 23.2 7.3 61 59-120 7-68 (148)
456 PF04762 IKI3: IKI3 family; I 43.5 4.6E+02 0.0099 28.4 16.1 60 73-132 698-761 (928)
457 PF08780 NTase_sub_bind: Nucle 42.8 1.2E+02 0.0026 22.9 6.3 21 428-448 63-83 (124)
458 PF12926 MOZART2: Mitotic-spin 42.7 1.2E+02 0.0025 21.2 7.4 44 90-133 29-72 (88)
459 smart00638 LPD_N Lipoprotein N 42.6 3.7E+02 0.008 27.0 23.9 62 137-203 310-371 (574)
460 PF09454 Vps23_core: Vps23 cor 42.4 97 0.0021 20.3 5.0 50 66-116 5-54 (65)
461 COG4259 Uncharacterized protei 40.9 1.4E+02 0.0029 21.6 6.4 55 86-140 54-108 (121)
462 PF14669 Asp_Glu_race_2: Putat 40.4 2.1E+02 0.0046 23.7 16.1 56 212-268 137-206 (233)
463 KOG2066 Vacuolar assembly/sort 40.1 4.4E+02 0.0096 27.2 26.5 151 76-234 363-532 (846)
464 KOG2659 LisH motif-containing 39.4 2.4E+02 0.0053 24.0 8.5 22 285-306 70-91 (228)
465 PF03745 DUF309: Domain of unk 39.2 1.1E+02 0.0023 19.8 5.0 17 81-97 11-27 (62)
466 COG2137 OraA Uncharacterized p 38.9 2.1E+02 0.0046 23.3 11.6 90 36-129 37-126 (174)
467 PF02184 HAT: HAT (Half-A-TPR) 38.9 57 0.0012 17.7 2.8 21 120-140 3-23 (32)
468 PF04090 RNA_pol_I_TF: RNA pol 38.7 2.3E+02 0.0051 23.6 9.1 59 69-128 41-100 (199)
469 COG4003 Uncharacterized protei 38.1 1E+02 0.0023 21.0 4.5 33 75-108 37-69 (98)
470 KOG0508 Ankyrin repeat protein 37.9 2.3E+02 0.0051 27.1 8.2 142 81-231 51-204 (615)
471 PRK12798 chemotaxis protein; R 37.8 3.6E+02 0.0078 25.5 19.6 156 220-378 125-286 (421)
472 COG5108 RPO41 Mitochondrial DN 37.7 3.5E+02 0.0076 27.4 9.6 92 319-411 33-130 (1117)
473 PRK14956 DNA polymerase III su 37.6 3.6E+02 0.0078 26.3 9.8 15 67-81 133-147 (484)
474 cd07153 Fur_like Ferric uptake 37.3 94 0.002 23.0 5.1 45 75-119 6-50 (116)
475 PF13762 MNE1: Mitochondrial s 36.7 2.1E+02 0.0045 22.5 12.5 52 136-187 78-130 (145)
476 KOG2034 Vacuolar sorting prote 36.7 5.3E+02 0.011 27.2 26.6 258 111-401 365-645 (911)
477 PF10475 DUF2450: Protein of u 36.2 3.2E+02 0.0069 24.5 10.4 52 213-271 104-155 (291)
478 KOG4814 Uncharacterized conser 36.0 2.9E+02 0.0063 27.8 8.8 85 81-165 366-456 (872)
479 PF02631 RecX: RecX family; I 35.8 1.9E+02 0.0041 21.7 7.7 100 46-151 4-106 (121)
480 COG2178 Predicted RNA-binding 35.6 2.6E+02 0.0056 23.2 7.4 26 387-412 32-57 (204)
481 cd00280 TRFH Telomeric Repeat 35.5 2.5E+02 0.0055 23.1 11.5 114 72-188 16-159 (200)
482 PF01475 FUR: Ferric uptake re 35.5 95 0.0021 23.2 4.9 48 73-120 11-58 (120)
483 PHA03100 ankyrin repeat protei 35.2 4.3E+02 0.0093 25.7 14.8 166 56-231 17-197 (480)
484 PRK13800 putative oxidoreducta 35.2 6.1E+02 0.013 27.4 26.4 271 154-463 620-894 (897)
485 PF00244 14-3-3: 14-3-3 protei 35.1 3E+02 0.0064 23.8 12.6 76 212-289 6-82 (236)
486 TIGR01987 HI0074 nucleotidyltr 34.9 2E+02 0.0044 21.8 7.4 12 330-341 5-16 (123)
487 PRK00117 recX recombination re 34.9 2.3E+02 0.005 22.4 11.4 62 37-100 29-90 (157)
488 cd07153 Fur_like Ferric uptake 34.6 1.5E+02 0.0033 21.8 5.8 35 186-220 14-48 (116)
489 PF09397 Ftsk_gamma: Ftsk gamm 34.5 38 0.00082 22.1 2.1 28 459-486 21-49 (65)
490 PRK11639 zinc uptake transcrip 34.3 2.5E+02 0.0054 22.7 8.1 25 185-209 38-62 (169)
491 KOG2396 HAT (Half-A-TPR) repea 33.8 4.6E+02 0.0099 25.6 24.3 241 192-452 302-558 (568)
492 KOG4567 GTPase-activating prot 33.8 3.6E+02 0.0078 24.4 10.0 71 192-268 263-343 (370)
493 PRK14956 DNA polymerase III su 33.8 4.6E+02 0.01 25.6 11.1 31 98-130 196-226 (484)
494 PF02847 MA3: MA3 domain; Int 33.1 1.9E+02 0.0042 21.1 6.2 21 249-269 8-28 (113)
495 COG4259 Uncharacterized protei 33.0 1.9E+02 0.0041 20.9 6.6 44 369-412 57-100 (121)
496 PLN03192 Voltage-dependent pot 33.0 5E+02 0.011 27.7 11.1 20 249-268 625-644 (823)
497 PF04090 RNA_pol_I_TF: RNA pol 32.9 2.5E+02 0.0054 23.5 7.0 65 385-455 42-107 (199)
498 PF10475 DUF2450: Protein of u 31.6 3.8E+02 0.0083 24.0 9.9 53 249-308 104-156 (291)
499 cd08789 CARD_IPS-1_RIG-I Caspa 31.6 1.8E+02 0.0039 20.2 5.7 41 113-156 41-81 (84)
500 KOG4814 Uncharacterized conser 31.6 4E+02 0.0086 26.9 8.9 88 254-342 365-456 (872)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-67 Score=527.75 Aligned_cols=461 Identities=16% Similarity=0.157 Sum_probs=430.8
Q ss_pred chhhhhhhhhccCCCCcccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 011236 20 NLEIFTRAYRAVKPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQG 99 (490)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 99 (490)
++..+.....| +..+|+.++.++++.|+.+.+.. ++++|.+.|..||..+|+.+|.+|++.|+++.|.++|++|.+.|
T Consensus 425 Al~lf~~M~~p-d~~Tyn~LL~a~~k~g~~e~A~~-lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G 502 (1060)
T PLN03218 425 AFRFAKLIRNP-TLSTFNMLMSVCASSQDIDGALR-VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG 502 (1060)
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHhCcCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC
Confidence 33344333333 78899999999999999888877 99999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHh--cCCCCCcchH
Q 011236 100 LAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED--KVDKLYGALLNCYVREGLVDESLSLMQKMKE--MGSFGSALNY 175 (490)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~ 175 (490)
+.|+..+|+.+|.+|++.|++++|.++|+.|...+ ||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|
T Consensus 503 v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTy 582 (1060)
T PLN03218 503 VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHH
Confidence 99999999999999999999999999999998876 8999999999999999999999999999986 6899999999
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 011236 176 NGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYII 255 (490)
Q Consensus 176 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (490)
++|+.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|. +.|+.||..+|+.++.+|++
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~-~~Gv~PD~~TynsLI~a~~k 661 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK-KKGVKPDEVFFSALVDVAGH 661 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011236 256 AGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEK 335 (490)
Q Consensus 256 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 335 (490)
.|++++|.++|++|.+.+.. ||..+|+.+|.+|++.|++++|.++|++|...+..|+..+|+.||.+|++.|++++|.+
T Consensus 662 ~G~~eeA~~l~~eM~k~G~~-pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 662 AGDLDKAFEILQDARKQGIK-LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999988 99999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----c--------------
Q 011236 336 MLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD----K-------------- 397 (490)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------- 397 (490)
+|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.+ .
T Consensus 741 lf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~ 820 (1060)
T PLN03218 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGR 820 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999876432 1
Q ss_pred -----CCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc--hhhhHHHHHHHHhc
Q 011236 398 -----NNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK--RNMYHALTEAHIRS 470 (490)
Q Consensus 398 -----~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 470 (490)
+..++|..+|++|++ .|+.||..||+.++.++++.+..+.+..+++.|...+.. ..+|++|+.++.+.
T Consensus 821 ~~~~n~w~~~Al~lf~eM~~-----~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~ 895 (1060)
T PLN03218 821 PQIENKWTSWALMVYRETIS-----AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY 895 (1060)
T ss_pred cccccchHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC
Confidence 224679999999999 999999999999998888999999999999988765544 88999999999665
Q ss_pred CCcHHHHHHHHHhCCCCCC
Q 011236 471 GQEVDGLLESMKADDIDED 489 (490)
Q Consensus 471 g~~a~~~~~~m~~~~~~pd 489 (490)
.++|..++++|.+.|+.||
T Consensus 896 ~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 896 DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred hHHHHHHHHHHHHcCCCCC
Confidence 5789999999999999997
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-67 Score=525.67 Aligned_cols=448 Identities=15% Similarity=0.159 Sum_probs=426.1
Q ss_pred CCCCcccHHHhhccCCCCCCChHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 011236 32 KPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQ-KISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQ 110 (490)
Q Consensus 32 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 110 (490)
+...+..++..+++.|+..+++. ++++|...|+ +++...++.++..|.+.|.+++|+.+|+.|.. |+..+|+.+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~-Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCID-LLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHH-HHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 45668889999999999988888 9999999985 57888889999999999999999999999875 799999999
Q ss_pred HHHHHhhcCHHHHHHHHHHccccC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCc
Q 011236 111 LDLIGKVRGLESAETYFNSLNDED--KVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQH 188 (490)
Q Consensus 111 ~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 188 (490)
+.+|++.|+++.|.++|+.|.+.+ ||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 999999999999999999999887 799999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011236 189 EKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMES-QSHISMDWGTYSTVANYYIIAGLKEKAIIYLK 267 (490)
Q Consensus 189 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 267 (490)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. ..++.||..+|+++|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999972 26789999999999999999999999999999
Q ss_pred HHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 011236 268 KCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCY 347 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 347 (490)
.|.+.+.. |+..+|+.+|.+|++.|++++|.++|++|...+..||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 604 ~M~e~gi~-p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 604 MIHEYNIK-GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHcCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999988 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhH
Q 011236 348 DFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLV 427 (490)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~ 427 (490)
|..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..||
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~-----~Gi~Pd~~Ty 757 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-----LGLCPNTITY 757 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----cCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcccc--hhhhHHHHHHHHh----c-------------------C--CcHHHHHHH
Q 011236 428 SSILDWLGDNRDVEEVEAFVSSLKIKVQK--RNMYHALTEAHIR----S-------------------G--QEVDGLLES 480 (490)
Q Consensus 428 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~l~~~~~~----~-------------------g--~~a~~~~~~ 480 (490)
+.++.+|++.|+++.|.+++++|.+.+.. ..+|++++..|.+ + + +.|..+|++
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e 837 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE 837 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence 99999999999999999999999998876 7889999876542 1 1 469999999
Q ss_pred HHhCCCCCCC
Q 011236 481 MKADDIDEDK 490 (490)
Q Consensus 481 m~~~~~~pd~ 490 (490)
|.+.|+.||.
T Consensus 838 M~~~Gi~Pd~ 847 (1060)
T PLN03218 838 TISAGTLPTM 847 (1060)
T ss_pred HHHCCCCCCH
Confidence 9999999983
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-63 Score=506.53 Aligned_cols=451 Identities=15% Similarity=0.115 Sum_probs=397.0
Q ss_pred ccccchhhhhhhhhccCCCCcccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011236 16 FTKTNLEIFTRAYRAVKPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWM 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 95 (490)
....++..+.....+ +..+|+.++.++++.|+.++++. ++++|...|+.||..+|+.++++|+..+++..+.+++..|
T Consensus 136 ~~~~A~~~f~~m~~~-d~~~~n~li~~~~~~g~~~~A~~-~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~ 213 (857)
T PLN03077 136 ELVHAWYVFGKMPER-DLFSWNVLVGGYAKAGYFDEALC-LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213 (857)
T ss_pred ChHHHHHHHhcCCCC-CeeEHHHHHHHHHhCCCHHHHHH-HHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHH
Confidence 344455556555555 88999999999999999999888 9999999999999999999999999999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchH
Q 011236 96 SGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNY 175 (490)
Q Consensus 96 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 175 (490)
.+.|+.++..+++.++.+|++.|++++|..+|++|.. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 214 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty 291 (857)
T PLN03077 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291 (857)
T ss_pred HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 9999999999999999999999999999999999986 68889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 011236 176 NGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYII 255 (490)
Q Consensus 176 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (490)
+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. . ||..+|+.+|.+|++
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~----~d~~s~n~li~~~~~ 366 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-T----KDAVSWTAMISGYEK 366 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-C----CCeeeHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999996 3 678899999999999
Q ss_pred cCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011236 256 AGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEK 335 (490)
Q Consensus 256 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 335 (490)
.|++++|+++|++|...+.. ||..||+.++.+|++.|+++.|.++++.+...+..|+..+|+.|+.+|++.|++++|.+
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~-Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVS-PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999988 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhh
Q 011236 336 MLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHE 415 (490)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 415 (490)
+|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+
T Consensus 446 vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~--- 517 (857)
T PLN03077 446 VFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR--- 517 (857)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH---
Confidence 9999854 6888999999999999999999999999986 5889999999999888888888888888888777
Q ss_pred cCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHhcC--CcHHHHHHHHHhCCCCCC
Q 011236 416 ENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQKRNMYHALTEAHIRSG--QEVDGLLESMKADDIDED 489 (490)
Q Consensus 416 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~~~~pd 489 (490)
.|+.|+..++++++.+|++.|+.++|.++|+.+ .++..+|+++|.+|++.| ++|.++|++|.+.|+.||
T Consensus 518 --~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 518 --TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred --hCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 666666655555555555555555555555554 122555555555555555 555555555555555555
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.9e-62 Score=487.92 Aligned_cols=439 Identities=15% Similarity=0.168 Sum_probs=344.4
Q ss_pred CCCcccHHHhhccCCCCCCChHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 011236 33 PVARNNLYSRISPLGDPDVSLTPVLDQWVLEG-QKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQL 111 (490)
Q Consensus 33 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 111 (490)
..+|+.++.++.+.|++.+++. +++.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.|+..+++.++
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~-~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALE-LFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHH-HHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 3479999999999999999888 888888764 78999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcH
Q 011236 112 DLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKI 191 (490)
Q Consensus 112 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 191 (490)
.+|++.|+++.|.++|++|.. ||..+||+++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|+.+.+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 999999999999999999986 789999999999999999999999999999999988888888777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 011236 192 PDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCED 271 (490)
Q Consensus 192 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 271 (490)
.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. . +|..+||.+|.+|++.|++++|.++|++|..
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-E----KTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-C----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777775 2 4666777777777777777777777777777
Q ss_pred hhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 011236 272 IVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRV 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 351 (490)
.+.. ||..||+.++.+|++.|++++|.+++..|...+..|+..+|++|+.+|++.|++++|.++|++|. .||..+
T Consensus 319 ~g~~-pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t 393 (697)
T PLN03081 319 SGVS-IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLIS 393 (697)
T ss_pred cCCC-CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeee
Confidence 6666 77777777777777777777777777777777666777777777777777777777777777663 356677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHH
Q 011236 352 PNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSIL 431 (490)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 431 (490)
||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+ ..|+.|+..+|+.++
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~----~~g~~p~~~~y~~li 469 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE----NHRIKPRAMHYACMI 469 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH----hcCCCCCccchHhHH
Confidence 7777777777777777777777777777777777777777777777777777777777764 135555555555555
Q ss_pred HHHHcCCCHHHHH--------------------------------HHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHH
Q 011236 432 DWLGDNRDVEEVE--------------------------------AFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDG 476 (490)
Q Consensus 432 ~~~~~~g~~~~a~--------------------------------~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~ 476 (490)
.+|++.|++++|. .+++++.+..|. ..+|..|++.|++.| ++|.+
T Consensus 470 ~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 5555555555554 444555555555 678888888888888 88888
Q ss_pred HHHHHHhCCCCC
Q 011236 477 LLESMKADDIDE 488 (490)
Q Consensus 477 ~~~~m~~~~~~p 488 (490)
+++.|+++|+..
T Consensus 550 v~~~m~~~g~~k 561 (697)
T PLN03081 550 VVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHcCCcc
Confidence 888898888764
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-61 Score=492.97 Aligned_cols=464 Identities=14% Similarity=0.112 Sum_probs=355.1
Q ss_pred hhhhhhcCCccccccchhhhhhhhhccCCCCcccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011236 5 LFSTIFNNKRNFTKTNLEIFTRAYRAVKPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKR 84 (490)
Q Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 84 (490)
++..+.+.+ ....+...|.....+ +..+|+.++.++++.|+.++++. ++++|...|+.||..+|+.++.+|++.|+
T Consensus 228 Li~~y~k~g--~~~~A~~lf~~m~~~-d~~s~n~li~~~~~~g~~~eAl~-lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 228 LITMYVKCG--DVVSARLVFDRMPRR-DCISWNAMISGYFENGECLEGLE-LFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred HHHHHhcCC--CHHHHHHHHhcCCCC-CcchhHHHHHHHHhCCCHHHHHH-HHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 444444433 344556666665555 88999999999999999999988 99999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011236 85 FKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMK 164 (490)
Q Consensus 85 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 164 (490)
++.|.+++..|.+.|..|+..+++.++.+|++.|++++|.++|++|.. ||..+||++|.+|++.|++++|+++|++|.
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999975 788899999999999999999999999999
Q ss_pred hcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHH
Q 011236 165 EMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWG 244 (490)
Q Consensus 165 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 244 (490)
+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|. + +|..
T Consensus 382 ~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~----~d~v 456 (857)
T PLN03077 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-E----KDVI 456 (857)
T ss_pred HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-C----CCee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 4 5667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 011236 245 TYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSL 324 (490)
Q Consensus 245 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 324 (490)
+|+.+|.+|++.|+.++|+.+|++|... .. ||..||+.++.+|++.|+++.+.+++..+...+..++..++++|+.+|
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~-pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLLT-LK-PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHhC-CC-CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 8999999999999999999999999764 44 888888888777777776666666666666655555555555555555
Q ss_pred HhcCCHHHHHH------------------------------HHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 011236 325 VKIGELEEAEK------------------------------MLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKE 374 (490)
Q Consensus 325 ~~~~~~~~a~~------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 374 (490)
++.|++++|.+ +|++|.+.|+.||..||+.++.+|++.|++++|.++|+.
T Consensus 535 ~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 535 VRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 55555555544 444444444444444444444444444444444444444
Q ss_pred HH-HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 011236 375 IV-KKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIK 453 (490)
Q Consensus 375 m~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 453 (490)
|. +.|+.|+..+|+.++.+|++.|++++|.+++++| .++||..+|.+|+.+|...|+.+.++...+++.+.
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m--------~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l 686 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM--------PITPDPAVWGALLNACRIHRHVELGELAAQHIFEL 686 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence 44 3444444444444444444444444444444443 13344444555555444444444444444444555
Q ss_pred ccc-hhhhHHHHHHHHhcC--CcHHHHHHHHHhCCCCCC
Q 011236 454 VQK-RNMYHALTEAHIRSG--QEVDGLLESMKADDIDED 489 (490)
Q Consensus 454 ~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m~~~~~~pd 489 (490)
.|. ...|..|.+.|...| ++|.++.+.|+++|+.++
T Consensus 687 ~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~ 725 (857)
T PLN03077 687 DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725 (857)
T ss_pred CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCC
Confidence 555 666667777777778 788888888988888875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-58 Score=460.61 Aligned_cols=403 Identities=15% Similarity=0.182 Sum_probs=382.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccC--CChhHHH
Q 011236 65 QKISELELQRVIRQLRSRKRFKHALQVSEWMSGQG-LAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED--KVDKLYG 141 (490)
Q Consensus 65 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~ 141 (490)
...+..+|+.+|..+.+.|++++|+++|++|...+ ..|+..+|+.++.+|++.++++.|.+++..|...+ ||..+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 44567799999999999999999999999999865 57899999999999999999999999999999876 8999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 011236 142 ALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARS 221 (490)
Q Consensus 142 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 221 (490)
.|+.+|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 999999999999999999999974 7999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHH
Q 011236 222 ELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKF 301 (490)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 301 (490)
+.+.+.+++..+. +.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|+++
T Consensus 239 ~~~~~~~l~~~~~-~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 239 SARAGQQLHCCVL-KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred cHHHHHHHHHHHH-HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999 899999999999999999999999999999999853 7999999999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011236 302 WGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKT 381 (490)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 381 (490)
|++|...+..||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|++.|++++|.++|++|.+
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---- 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---- 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhc-ccc--hh
Q 011236 382 PTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIK-VQK--RN 458 (490)
Q Consensus 382 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~--~~ 458 (490)
||..+|++||.+|++.|+.++|.++|++|.+ .|+.||..||+.++.+|.+.|+.++|.++|+.|.+. +.. ..
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~-----~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIA-----EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 6999999999999999999999999999999 899999999999999999999999999999999864 333 78
Q ss_pred hhHHHHHHHHhcC--CcHHHHHHHHHhCCCCCC
Q 011236 459 MYHALTEAHIRSG--QEVDGLLESMKADDIDED 489 (490)
Q Consensus 459 ~~~~l~~~~~~~g--~~a~~~~~~m~~~~~~pd 489 (490)
+|+.++++|++.| ++|.+++++| ++.||
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~ 493 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA---PFKPT 493 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC---CCCCC
Confidence 9999999999999 9999998876 45565
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-29 Score=263.39 Aligned_cols=427 Identities=15% Similarity=0.105 Sum_probs=253.3
Q ss_pred CcccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011236 35 ARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLI 114 (490)
Q Consensus 35 ~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (490)
.+..+...+...|+.+++.. .+++.... .+.+...+..+...+...|++++|.+.++.+.+.+ +.+...+..+...+
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~-~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 543 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKARE-AFEKALSI-EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLY 543 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHH-HHHHHHhh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 34444444444454444444 33333322 12233444444555555555555555555555443 23444445555555
Q ss_pred HhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHH
Q 011236 115 GKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPD 193 (490)
Q Consensus 115 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 193 (490)
.+.|+.++|..+|+++...+| +...+..++..+.+.|++++|..+++.+.... +.+..+|..+..++...|++++|..
T Consensus 544 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 622 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVS 622 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555544443 34445555555555555555555555555442 2244555666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 011236 194 VLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIV 273 (490)
Q Consensus 194 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 273 (490)
.|+.+.+.. +.+...+..+..++...|++++|..+|+++. +... .+..++..++..+...|++++|..+++.+....
T Consensus 623 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 699 (899)
T TIGR02917 623 SFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL-ELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699 (899)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666665532 1234455555566666666666666666655 3332 345555566666666666666666666665544
Q ss_pred ccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHH
Q 011236 274 SKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPN 353 (490)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 353 (490)
+ .+...+..+...+...|++++|...|+.+....+ +..++..+..++.+.|++++|.+.++.+.+. .+.+...+.
T Consensus 700 ~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~ 774 (899)
T TIGR02917 700 P--KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRT 774 (899)
T ss_pred c--CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHH
Confidence 3 4555566666666666666666666666655443 3355556666666666777776666666664 233555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc-hhhHHHHHH
Q 011236 354 IILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK-PSLVSSILD 432 (490)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~ 432 (490)
.+...|...|++++|...|+++.+.++. +..+++.+...+...|+ .+|+.+++++.. ..|+ ..++..+..
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~-------~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALK-------LAPNIPAILDTLGW 845 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHh-------hCCCCcHHHHHHHH
Confidence 6666677777777777777777666543 56667777777777777 667777777766 2233 355666777
Q ss_pred HHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHHH
Q 011236 433 WLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESMK 482 (490)
Q Consensus 433 ~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m~ 482 (490)
.+...|++++|..+++++.+.+|. +.++..++.++.+.| ++|.+++++|.
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777788888888888888887777 778888888888888 77888888775
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-28 Score=258.30 Aligned_cols=430 Identities=12% Similarity=0.021 Sum_probs=338.9
Q ss_pred ccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011236 37 NNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGK 116 (490)
Q Consensus 37 ~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 116 (490)
..++..+.+.|+.+++.. +++.+... .+.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+..
T Consensus 435 ~~l~~~~~~~~~~~~A~~-~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 435 LLLILSYLRSGQFDKALA-AAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQ 511 (899)
T ss_pred HHHHHHHHhcCCHHHHHH-HHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHH
Confidence 334455555666655555 55555433 44567778888888888888888888888887765 4556666777778888
Q ss_pred hcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHH
Q 011236 117 VRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVL 195 (490)
Q Consensus 117 ~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 195 (490)
.|++++|.+.|+.+....| +..++..+...+.+.|+.++|..+++++...+.. +...+..++..+...|++++|..++
T Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888888877766 5677888888888888888888888888776543 6667777888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 011236 196 LDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSK 275 (490)
Q Consensus 196 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 275 (490)
+.+.+. .+.+..+|..+..++...|++++|...|+++. +.+. .+...+..+..++...|++++|...|+++....+
T Consensus 591 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 666 (899)
T TIGR02917 591 NEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL-ALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKP- 666 (899)
T ss_pred HHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-
Confidence 888765 34567788888888888888888888888887 4443 4566777888888888888888888888877554
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHH
Q 011236 276 SKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNII 355 (490)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 355 (490)
.+..++..++..+...|++++|.++++.+....+ .+...+..+...+...|++++|...++.+...+ |+..++..+
T Consensus 667 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l 742 (899)
T TIGR02917 667 -DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKL 742 (899)
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHH
Confidence 5677888888888888888888888887777665 666778888888888999999999999888753 444677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHH
Q 011236 356 LLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLG 435 (490)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 435 (490)
...+.+.|++++|...++++.+..+. +...+..+...|...|++++|.++|+++++. .+++...+..+...+.
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKK------APDNAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH
Confidence 88888999999999999988887654 7788888888899999999999999999872 2345677888888888
Q ss_pred cCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHHHhCCC
Q 011236 436 DNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESMKADDI 486 (490)
Q Consensus 436 ~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m~~~~~ 486 (490)
..|+ .+|...++++.+..|. +..+..++..+...| ++|.++++++.+.+.
T Consensus 816 ~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 8888 7799999998888888 888888899998888 889999999988654
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=3.3e-25 Score=198.82 Aligned_cols=431 Identities=15% Similarity=0.112 Sum_probs=297.3
Q ss_pred cccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011236 36 RNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIG 115 (490)
Q Consensus 36 ~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (490)
.-.|...+-+.|+..++.+ .-.|+-..-+.+....-.+-..+.+..+.+.....-....+.. +.-.++|..+...+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~--h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEK--HCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHH--HHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 4455555666666665554 2233322223333333333344445555555544444444443 345667777777787
Q ss_pred hhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHhcCCcCcHHH
Q 011236 116 KVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSAL-NYNGIMCLYTNTGQHEKIPD 193 (490)
Q Consensus 116 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~ 193 (490)
..|++++|+.+++.+.+..| ....|..+..++...|+.+.|.+.|.+..+.+ |+.. ..+.+.......|+.++|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 88888888888888877776 47778888888888888888888887777763 3322 22334444455677888888
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 011236 194 VLLDMKENGVPPD-NFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDI 272 (490)
Q Consensus 194 ~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 272 (490)
.|.+.++. .|. ...|+.|...+-..|+...|++.|++.. +.++ --...|-.|...|...+.+++|...|.+....
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv-kldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV-KLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhh-cCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 87777764 232 3457777777777888888888888777 4443 23556777888888888888888888777665
Q ss_pred hccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhH
Q 011236 273 VSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVP 352 (490)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 352 (490)
.+ .....+..+...|...|.++.|+..|++.+...+ .-...|+.|..++-..|++.+|.+.+.+..... +......
T Consensus 282 rp--n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 282 RP--NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred CC--cchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 44 4567777777777888888888888887777665 455678888888888888888888888877752 2234566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHH
Q 011236 353 NIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSIL 431 (490)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~ 431 (490)
+.|...|...|.+++|..+|....+-.+. -...++.|...|-++|++++|+..++++++ +.|+. ..|+.+.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-------I~P~fAda~~NmG 429 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR-------IKPTFADALSNMG 429 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh-------cCchHHHHHHhcc
Confidence 77788888888888888888877764322 334677888888888888888888888876 66776 6778888
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHHHhCCCCCC
Q 011236 432 DWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESMKADDIDED 489 (490)
Q Consensus 432 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m~~~~~~pd 489 (490)
..|...|+.+.|.+.+.++....|. .+.++.|...|...| .+|+.-++...+ ++||
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 8888888888888888888888887 888888888888888 777777776665 4444
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=4.1e-23 Score=185.51 Aligned_cols=384 Identities=15% Similarity=0.117 Sum_probs=333.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhH-HHHH
Q 011236 65 QKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKL-YGAL 143 (490)
Q Consensus 65 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~l 143 (490)
.+--..+|..+...+...|+++.|+.+++.+++.. +-..+.|.-+..++...|+.+.|.+.|....+.+|+... .+.+
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~l 190 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDL 190 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcch
Confidence 34467789999999999999999999999999987 457788889999999999999999999999999986444 4445
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC
Q 011236 144 LNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPD-NFSYRICINSYGARSE 222 (490)
Q Consensus 144 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 222 (490)
...+-..|+.++|...+.+..+.... -...|+.|...+...|+...|++.|++..+. .|+ ...|-.|...|...+.
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 55566689999999999999887432 4668999999999999999999999999874 444 4578889999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHH
Q 011236 223 LSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFW 302 (490)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 302 (490)
++.|...|.+.. .... ....+|..+...|...|++|.|+..|++..+..+ .=...|+.|..++-..|++.+|.+.|
T Consensus 268 ~d~Avs~Y~rAl-~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P--~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 268 FDRAVSCYLRAL-NLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP--NFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred chHHHHHHHHHH-hcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCC--CchHHHhHHHHHHHhccchHHHHHHH
Confidence 999999999987 4433 4567788888999999999999999999988765 34578999999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011236 303 GLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYD-FRVPNIILLGYSQKGMIEKADAVLKEIVKKGKT 381 (490)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 381 (490)
.+...-.+ ......+.|...+...|.+++|..+|....+- .|. ...++.|...|-+.|++++|+..+++.+.- .
T Consensus 344 nkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~ 418 (966)
T KOG4626|consen 344 NKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--K 418 (966)
T ss_pred HHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--C
Confidence 99888776 66778899999999999999999999999884 343 456888999999999999999999999884 5
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hh
Q 011236 382 PT-PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RN 458 (490)
Q Consensus 382 p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~ 458 (490)
|+ ...|+.+...|-..|+.+.|++.+.+++. +.|.- ..++.|...|...|+..+|..-++...+..|+ +.
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~-------~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ-------INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHh-------cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 55 46899999999999999999999999998 66776 78999999999999999999999999999999 88
Q ss_pred hhHHHHHHHH
Q 011236 459 MYHALTEAHI 468 (490)
Q Consensus 459 ~~~~l~~~~~ 468 (490)
.|..++.++-
T Consensus 492 A~cNllh~lq 501 (966)
T KOG4626|consen 492 AYCNLLHCLQ 501 (966)
T ss_pred hhhHHHHHHH
Confidence 8888877653
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=4.9e-23 Score=193.52 Aligned_cols=301 Identities=14% Similarity=0.099 Sum_probs=209.6
Q ss_pred HHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCC
Q 011236 112 DLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGS---ALNYNGIMCLYTNTGQ 187 (490)
Q Consensus 112 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~ 187 (490)
..+...|++++|...|+++...+| +..++..+...+...|++++|..+++.+...+..++ ..++..+...|...|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344566777777777777777766 455677777777788888888888877776532211 2356677777777788
Q ss_pred cCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 011236 188 HEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMD----WGTYSTVANYYIIAGLKEKAI 263 (490)
Q Consensus 188 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~ 263 (490)
+++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+. +.+..+. ...+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLE-KLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 888888887777642 2456677777777888888888888888776 4333222 123455666777778888888
Q ss_pred HHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011236 264 IYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELS 343 (490)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 343 (490)
..|+++.+..+ .+...+..+...+.+.|++++|.++++++....+.....++..++.+|.+.|++++|...++.+.+.
T Consensus 201 ~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 201 ALLKKALAADP--QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHhHCc--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888776543 4556677777778888888888888887776544333456677777888888888888888877765
Q ss_pred CCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHhhhcCcCC
Q 011236 344 CYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD---KNNMEKAFECMKEALAVHEENKFW 420 (490)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 420 (490)
.|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.+++++++ .++
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~-----~~~ 349 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG-----EQL 349 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH-----HHH
Confidence 455556677777788888888888888777765 4677777777766553 4577778888887777 556
Q ss_pred Ccchh
Q 011236 421 RPKPS 425 (490)
Q Consensus 421 ~p~~~ 425 (490)
.|++.
T Consensus 350 ~~~p~ 354 (389)
T PRK11788 350 KRKPR 354 (389)
T ss_pred hCCCC
Confidence 66654
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.6e-22 Score=190.03 Aligned_cols=299 Identities=14% Similarity=0.079 Sum_probs=197.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcc
Q 011236 144 LNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPD---NFSYRICINSYGAR 220 (490)
Q Consensus 144 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~ 220 (490)
...+...|++++|+..|+++.+.+.. +..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34455677788888888888776432 555677777777777888888887777776432221 23566677777777
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCCh----hhHHHHHHHHHhcCChh
Q 011236 221 SELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDA----LGYNHLISHYASLGNKD 296 (490)
Q Consensus 221 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 296 (490)
|++++|..+|+++. +... .+..++..++..+.+.|++++|.+.++.+....+. +.. ..+..+...+...|+++
T Consensus 121 g~~~~A~~~~~~~l-~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 121 GLLDRAEELFLQLV-DEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-SLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCHHHHHHHHHHHH-cCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHhCCCHH
Confidence 77777777777776 4433 45667777777777777777777777777665443 211 23445566666777777
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011236 297 EMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIV 376 (490)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 376 (490)
+|...++++....+ .+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777666543 34456666777777777777777777777664322223456667777777777777777777776
Q ss_pred HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHc---CCCHHHHHHHHHHHHhc
Q 011236 377 KKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGD---NRDVEEVEAFVSSLKIK 453 (490)
Q Consensus 377 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 453 (490)
+.. |+...+..++..+.+.|++++|..+++++++ ..|+..++..++..+.. .|+.+++..+++++.+.
T Consensus 277 ~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-------~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 277 EEY--PGADLLLALAQLLEEQEGPEAAQALLREQLR-------RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH-------hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 653 4445556677777777777777777777766 24666666666665553 34667777777777665
Q ss_pred ccc
Q 011236 454 VQK 456 (490)
Q Consensus 454 ~~~ 456 (490)
...
T Consensus 348 ~~~ 350 (389)
T PRK11788 348 QLK 350 (389)
T ss_pred HHh
Confidence 443
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=6.5e-21 Score=188.38 Aligned_cols=401 Identities=12% Similarity=0.032 Sum_probs=289.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHh
Q 011236 71 ELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVR 149 (490)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~ 149 (490)
.+......+.+.|++++|+..|++.++.. |++..+..+..++.+.|++++|+..++...+.+| +..+|..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 35566777889999999999999998875 5778888889999999999999999999999887 57789999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHC----------------------------
Q 011236 150 EGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKEN---------------------------- 201 (490)
Q Consensus 150 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------------------------- 201 (490)
.|++++|+.-|......+...+.. ...++..+... .+........+.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 999999998887665442111111 11111111000 000000000000
Q ss_pred ---CCCCCH-HHHHHHHHH---HhccCChHHHHHHHHHHHhCCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 011236 202 ---GVPPDN-FSYRICINS---YGARSELSSMENVLQEMESQSH-ISM-DWGTYSTVANYYIIAGLKEKAIIYLKKCEDI 272 (490)
Q Consensus 202 ---~~~p~~-~~~~~li~~---~~~~g~~~~a~~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 272 (490)
...|+. ..+..+... ....+++++|.+.|++.. +.+ ..| ....+..+...+...|++++|+..|++....
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al-~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKAL-DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHH-hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 000110 001111111 123467889999999887 433 223 4566778888888999999999999998876
Q ss_pred hccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhH
Q 011236 273 VSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVP 352 (490)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 352 (490)
.+ .+...|..+...+...|++++|...|+......+ .+...+..+...+...|++++|...|++..+.. +.+...+
T Consensus 361 ~P--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~ 436 (615)
T TIGR00990 361 DP--RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSH 436 (615)
T ss_pred CC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHH
Confidence 54 4567888888889999999999999998877755 567788888899999999999999999998863 3345667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchh-hHHHHH
Q 011236 353 NIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPS-LVSSIL 431 (490)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~l~ 431 (490)
..+...+.+.|++++|+..|++.++..+. +...|+.+...+...|++++|+..|+++++..++..+..++.. .+...+
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 77888889999999999999998876543 6778888999999999999999999999884432222222221 222222
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHHHhC
Q 011236 432 DWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESMKAD 484 (490)
Q Consensus 432 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m~~~ 484 (490)
..+...|++++|.+++++.....|. ...+..++..+.+.| ++|+.+|++..+.
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3334468999999999998888888 778899999999999 8899988887543
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=8.8e-21 Score=199.47 Aligned_cols=319 Identities=10% Similarity=0.041 Sum_probs=192.0
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCC-CHHHH------------HHH
Q 011236 147 YVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPP-DNFSY------------RIC 213 (490)
Q Consensus 147 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~------------~~l 213 (490)
+...|++++|+..|++..+..+. +...+..+..++.+.|++++|...|++..+..... ....+ ...
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 34455555555555555554322 44455555555555555555555555555432111 10001 111
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhh------------
Q 011236 214 INSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALG------------ 281 (490)
Q Consensus 214 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------ 281 (490)
...+.+.|++++|+..|+++. .... .+...+..+..++...|++++|++.|+++.+..+ .+...
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al-~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p--~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQAR-QVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP--GNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcC
Confidence 223445555555555555555 3332 3344444455555555555555555555544332 12222
Q ss_pred ------------------------------HHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH
Q 011236 282 ------------------------------YNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELE 331 (490)
Q Consensus 282 ------------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 331 (490)
+..+...+...|++++|.+.|++.....+ .+...+..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 22233445567778888888887776655 45556677777788888888
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHH--------------------------------------------HHHHhcCCHHH
Q 011236 332 EAEKMLEEWELSCYCYDFRVPNIIL--------------------------------------------LGYSQKGMIEK 367 (490)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~--------------------------------------------~~~~~~g~~~~ 367 (490)
+|...++++.+... .+...+..+. ..+...|+.++
T Consensus 513 ~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 88888887766421 1222222222 22334444444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCc-chhhHHHHHHHHHcCCCHHHHHHH
Q 011236 368 ADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRP-KPSLVSSILDWLGDNRDVEEVEAF 446 (490)
Q Consensus 368 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 446 (490)
|..+++ . .+++...+..+...+.+.|++++|+..|+++++. .| +...+..+...+...|++++|++.
T Consensus 592 A~~~l~----~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-------~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 592 AEALLR----Q-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-------EPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHH----h-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 444443 1 1235556677888888899999999999999882 34 357788888889899999999999
Q ss_pred HHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHHHhC
Q 011236 447 VSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESMKAD 484 (490)
Q Consensus 447 ~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m~~~ 484 (490)
++.+.+..|. ...+..+..++...| ++|.++++++.+.
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 9988887777 777888888888888 8899999888764
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=4.3e-21 Score=201.79 Aligned_cols=424 Identities=11% Similarity=0.001 Sum_probs=279.0
Q ss_pred ccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhH------------HHH
Q 011236 44 SPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSV-HDH------------AVQ 110 (490)
Q Consensus 44 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~------------~~l 110 (490)
...|+.+++.. .+++..+. .+-+...+..+...+.+.|++++|++.|++..+....... ..+ ...
T Consensus 280 ~~~g~~~~A~~-~l~~aL~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 280 VDSGQGGKAIP-ELQQAVRA-NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHCCCHHHHHH-HHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 34455555554 44444433 2235566666666666667777777777666655421111 100 111
Q ss_pred HHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcC
Q 011236 111 LDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHE 189 (490)
Q Consensus 111 ~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 189 (490)
...+.+.|++++|+..|+++....| +..++..+...+...|++++|++.|++..+.... +...+..+...+. .++.+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHH
Confidence 2344566667777777766666655 3555666666666677777777777666655322 3444555555443 34556
Q ss_pred cHHHHHHHHHHCCCC--------CCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011236 190 KIPDVLLDMKENGVP--------PDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEK 261 (490)
Q Consensus 190 ~a~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 261 (490)
+|..+++.+...... .....+..+...+...|++++|.+.|++.. +..+ -+...+..+...|.+.|++++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al-~~~P-~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL-ALDP-GSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 666665544221100 001223445566667788888888888877 4443 345566677778888888888
Q ss_pred HHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCCh---------hhHHHHHHHHHhcCCHHH
Q 011236 262 AIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLN---------RDYITMLGSLVKIGELEE 332 (490)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~ 332 (490)
|...++++....+ .+...+..+...+...++.++|+..++.+......+.. ..+..+...+...|+.++
T Consensus 514 A~~~l~~al~~~P--~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 514 ADALMRRLAQQKP--NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 8888888776444 34445555555566778888888877754322111111 122345667788899999
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 333 AEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 333 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
|..+++. .+.+...+..+...+.+.|++++|+..|++..+..+. +...+..++..|...|++++|++.++...+
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 9888772 3456667788999999999999999999999998655 788999999999999999999999998876
Q ss_pred hhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-h------hhhHHHHHHHHhcC--CcHHHHHHHHH
Q 011236 413 VHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-R------NMYHALTEAHIRSG--QEVDGLLESMK 482 (490)
Q Consensus 413 ~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~------~~~~~l~~~~~~~g--~~a~~~~~~m~ 482 (490)
..|+. .++..+..++...|++++|.++++++....+. + ..+..+...+...| ++|+..|++..
T Consensus 666 -------~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 666 -------TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred -------cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33443 56677888889999999999999999887654 2 46667788899999 89999998775
Q ss_pred h-CCCCC
Q 011236 483 A-DDIDE 488 (490)
Q Consensus 483 ~-~~~~p 488 (490)
. .|+.|
T Consensus 739 ~~~~~~~ 745 (1157)
T PRK11447 739 VASGITP 745 (1157)
T ss_pred hhcCCCC
Confidence 3 35554
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.2e-20 Score=185.77 Aligned_cols=335 Identities=10% Similarity=-0.051 Sum_probs=272.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHH
Q 011236 70 LELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYV 148 (490)
Q Consensus 70 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~ 148 (490)
.....++..+.+.|++++|..+++...... +-++.....++.+....|+++.|...|+.+....| +...+..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345567777889999999999999998887 34566666666777789999999999999999888 5778888999999
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 011236 149 REGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMEN 228 (490)
Q Consensus 149 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 228 (490)
+.|++++|...++++...... +...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 999999999999999887433 6778888999999999999999999988765432 23333333 34778899999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhH----HHHHHHH
Q 011236 229 VLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDE----MMKFWGL 304 (490)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~ 304 (490)
.++.+. .....++...+..+..++...|++++|+..++++....+ .+...+..+...+...|++++ |...|++
T Consensus 199 ~~~~~l-~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p--~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 199 LARALL-PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL--DGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHH-hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999987 554334455556667888999999999999999987665 577888889999999999986 8999998
Q ss_pred HHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011236 305 QKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTP 384 (490)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 384 (490)
.....+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+++.+.++. +.
T Consensus 276 Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~ 352 (656)
T PRK15174 276 ALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TS 352 (656)
T ss_pred HHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-ch
Confidence 888766 577889999999999999999999999998863 234556777889999999999999999999887543 33
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 011236 385 NSWSIIAAGYADKNNMEKAFECMKEALAVH 414 (490)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 414 (490)
..+..+..++...|+.++|...|+++++..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 445556778899999999999999998844
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.8e-20 Score=184.54 Aligned_cols=373 Identities=8% Similarity=-0.060 Sum_probs=293.6
Q ss_pred HhcCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHH
Q 011236 80 RSRKRFKHALQVSEWMSGQGL--AFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDES 156 (490)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a 156 (490)
.+..+|+...-.|....+.-- .-+......++..+.+.|+++.|..+++......| +...+..++.+....|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 345555554444443322211 12344455567778899999999999999988877 466777777888889999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 011236 157 LSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQ 236 (490)
Q Consensus 157 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 236 (490)
+..++++....+. +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+. .
T Consensus 96 ~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~-~ 172 (656)
T PRK15174 96 LQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA-Q 172 (656)
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH-H
Confidence 9999999998654 67788999999999999999999999998852 2356678889999999999999999999886 4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhh
Q 011236 237 SHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRD 316 (490)
Q Consensus 237 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 316 (490)
... .+...+..+ ..+...|++++|...++.+....+. ++...+..+..++...|++++|...++......+ .+...
T Consensus 173 ~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~-~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~ 248 (656)
T PRK15174 173 EVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFAL-ERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAAL 248 (656)
T ss_pred hCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHH
Confidence 443 233344333 3488899999999999998776554 4455566667888999999999999999887765 56778
Q ss_pred HHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011236 317 YITMLGSLVKIGELEE----AEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAA 392 (490)
Q Consensus 317 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 392 (490)
+..+...+...|++++ |...+++..+.. +.+...+..+...+.+.|++++|...+++..+..+. +...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 8889999999999986 899999998863 335678889999999999999999999999987655 6677888999
Q ss_pred HHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhh-HHHHHHHHHcCCCHHHHHHHHHHHHhcccc--hhhhHHHHHHHH
Q 011236 393 GYADKNNMEKAFECMKEALAVHEENKFWRPKPSL-VSSILDWLGDNRDVEEVEAFVSSLKIKVQK--RNMYHALTEAHI 468 (490)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~l~~~~~ 468 (490)
++.+.|++++|...++++.. ..|+... +..+..++...|+.++|...|+++.+..|. +..|...+..|.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~-------~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~ 398 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAR-------EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALD 398 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHH-------hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHH
Confidence 99999999999999999987 3365533 444567889999999999999999988777 555554444443
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=4.5e-19 Score=175.31 Aligned_cols=402 Identities=9% Similarity=-0.037 Sum_probs=295.0
Q ss_pred cHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhh
Q 011236 38 NLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKV 117 (490)
Q Consensus 38 ~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 117 (490)
..-..+.+.|+++.++. .+++.+ ...|+...|..+..++.+.|++++|++.++..++.+ +.....+..+..++...
T Consensus 132 ~~G~~~~~~~~~~~Ai~-~y~~al--~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIK-LYSKAI--ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHcCCHHHHHH-HHHHHH--hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 44456667788888888 666555 356788899999999999999999999999999887 45677888899999999
Q ss_pred cCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHH-------------HHh-c-------------CCC
Q 011236 118 RGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQK-------------MKE-M-------------GSF 169 (490)
Q Consensus 118 ~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~-------------m~~-~-------------~~~ 169 (490)
|++++|+..|..+...++ +......++..+........+...++. ... . ...
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 999999988876654432 211111111111110001111111110 000 0 000
Q ss_pred CC-cchHHHHHHHH---HhcCCcCcHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCH
Q 011236 170 GS-ALNYNGIMCLY---TNTGQHEKIPDVLLDMKENG-VPP-DNFSYRICINSYGARSELSSMENVLQEMESQSHISMDW 243 (490)
Q Consensus 170 p~-~~~~~~l~~~~---~~~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 243 (490)
|. ...+..+...+ ...+++++|.+.|+...+.+ ..| +...+..+...+...|++++|...|++.. .... -..
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal-~l~P-~~~ 365 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI-ELDP-RVT 365 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCC-CcH
Confidence 00 00111111111 12367889999999998765 233 44568888888999999999999999998 5443 446
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 011236 244 GTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGS 323 (490)
Q Consensus 244 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (490)
..|..+..++...|++++|+..|+++....+ .+...|..+...+...|++++|...|++.+...+ .+...+..+..+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~ 442 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNS--EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHH
Confidence 6888899999999999999999999988665 5788899999999999999999999998888765 566778889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHhcc
Q 011236 324 LVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPN------SWSIIAAGYADK 397 (490)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~l~~~~~~~ 397 (490)
+.+.|++++|...+++..+. .+.+...++.+...+...|++++|...|++.++.....+.. .++.....+...
T Consensus 443 ~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 99999999999999999875 34457788999999999999999999999998865431111 122223334457
Q ss_pred CCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 398 NNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 398 ~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
|++++|.+++++++. +.|+. ..+..+...+...|++++|.+.|++..+....
T Consensus 522 ~~~~eA~~~~~kAl~-------l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 522 QDFIEAENLCEKALI-------IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred hhHHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 999999999999988 33555 56888999999999999999999998877654
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=4.8e-19 Score=178.25 Aligned_cols=406 Identities=10% Similarity=0.024 Sum_probs=265.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHH
Q 011236 65 QKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGAL 143 (490)
Q Consensus 65 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~l 143 (490)
.+.+..-..-.+......|+.++|++++....... +.+...+..+...+...|++++|..+|+......| +...+..+
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34556666666677777888888888888777633 34555677777788888888888888888777766 46667777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 011236 144 LNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSEL 223 (490)
Q Consensus 144 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 223 (490)
...+...|++++|+..+++..+..+. +.. +..+..++...|+.++|...++++.+... .+...+..+..++...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCh
Confidence 77788888888888888888776332 444 77777777788888888888888877532 2444555566677777778
Q ss_pred HHHHHHHHHHHhCCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHhhhhccCCChh-hHH----H
Q 011236 224 SSMENVLQEMESQSHISMDW------GTYSTVANYYI-----IAGLK---EKAIIYLKKCEDIVSKSKDAL-GYN----H 284 (490)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~~~~~~~~~~~~~-~~~----~ 284 (490)
+.|++.++... . .|+. .....++.... ..+++ ++|+..++.+....+..|+.. .+. .
T Consensus 167 e~Al~~l~~~~-~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 167 APALGAIDDAN-L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred HHHHHHHHhCC-C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 88887777665 2 1221 11122222222 12223 667777777765422212221 111 1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchhHHHHHHHHHh
Q 011236 285 LISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCY---DFRVPNIILLGYSQ 361 (490)
Q Consensus 285 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 361 (490)
.+.++...|++++|...|+.+...+..........+..+|...|++++|...|+++.+..... .......+..++..
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 123445667888888888877665432111222334667778888888888888876542211 12334556667778
Q ss_pred cCCHHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhH
Q 011236 362 KGMIEKADAVLKEIVKKGK-----------TPT---PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLV 427 (490)
Q Consensus 362 ~g~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~ 427 (490)
.|++++|..+++.+.+..+ .|+ ...+..+...+...|+.++|+++++++.... +-+...+
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~------P~n~~l~ 396 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA------PGNQGLR 396 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHH
Confidence 8888888888888776532 122 1244566677778888888888888887722 2334667
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHHHhC
Q 011236 428 SSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESMKAD 484 (490)
Q Consensus 428 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m~~~ 484 (490)
..+...+...|+.++|++.++++....|. ...+..++..+.+.| ++|..+++++.+.
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 77777788888888888888888888887 677777777777777 7888888887763
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=1e-19 Score=183.14 Aligned_cols=408 Identities=10% Similarity=-0.007 Sum_probs=310.5
Q ss_pred CCCCcccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 011236 32 KPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQL 111 (490)
Q Consensus 32 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 111 (490)
++......+......|+.++++. ++.+... ..+.+...+..+...+...|++++|.++++...+.. +.++.....+.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~-~~~~~~~-~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVIT-VYNRYRV-HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHH-HHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45556667777778888888875 6666654 234556679999999999999999999999999886 46677788888
Q ss_pred HHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCc
Q 011236 112 DLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEK 190 (490)
Q Consensus 112 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 190 (490)
.++...|++++|+..++++....| +.. +..+..++...|+.++|+..++++.+..+. +...+..+..++...+..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 899999999999999999998887 466 888999999999999999999999998654 66666778888888899999
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHh-----ccCCh---HHHHHHHHHHHhCCCCCCCHH-HH----HHHHH
Q 011236 191 IPDVLLDMKENGVPPDN------FSYRICINSYG-----ARSEL---SSMENVLQEMESQSHISMDWG-TY----STVAN 251 (490)
Q Consensus 191 a~~~~~~m~~~~~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~~-~~----~~li~ 251 (490)
|++.++.... .|+. .....++.... ..+++ ++|++.++.+.......|+.. .+ ...+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9998886654 2332 11222233222 22234 778888888873212223321 11 11134
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcC
Q 011236 252 YYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQ---LNRDYITMLGSLVKIG 328 (490)
Q Consensus 252 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~ 328 (490)
.+...|++++|+..|+.+...++..|+. .-..+..+|...|++++|+..|+.+....+.. .......+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 5567799999999999998875421222 22335778999999999999999877654321 1245666777889999
Q ss_pred CHHHHHHHHHHHHhcCC-----------CCC---chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011236 329 ELEEAEKMLEEWELSCY-----------CYD---FRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGY 394 (490)
Q Consensus 329 ~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 394 (490)
++++|.+.++.+..... .|+ ...+..+...+...|+.++|+++++++....+. +...+..+...+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 99999999999987521 122 123456777889999999999999999988655 788899999999
Q ss_pred hccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 395 ADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
...|++++|++.+++++. +.|+. ..+......+...|++++|+.+++.+.+..|.
T Consensus 404 ~~~g~~~~A~~~l~~al~-------l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 404 QARGWPRAAENELKKAEV-------LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HhcCCHHHHHHHHHHHHh-------hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999988 44664 56667777888999999999999999999888
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=5.4e-17 Score=160.46 Aligned_cols=424 Identities=10% Similarity=0.031 Sum_probs=302.6
Q ss_pred hccCCCCCCChHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHH
Q 011236 43 ISPLGDPDVSLTPVLDQWVLEGQKISE-LELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLE 121 (490)
Q Consensus 43 l~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 121 (490)
..+.|+...++. .+++..+. .|+. .....++..+...|+.++|+..+++..... +........+...+...|+++
T Consensus 44 ~~r~Gd~~~Al~-~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLD-YLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHH-HHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 446788887777 55555433 3332 223388888888899999999999988322 233334444466888889999
Q ss_pred HHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHH
Q 011236 122 SAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKE 200 (490)
Q Consensus 122 ~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 200 (490)
.|+++|+++.+.+| +..++..++..+...++.++|++.++++... .|+...+-.++..+...++..+|++.++++.+
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999999888 5777888888999999999999999998876 34555554444444345556569999999988
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHH----HHHHHH---------HcCC---HHHHHH
Q 011236 201 NGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYST----VANYYI---------IAGL---KEKAII 264 (490)
Q Consensus 201 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----li~~~~---------~~~~---~~~a~~ 264 (490)
.. +-+...+..+..+..+.|-...|.++..+-. +. .+...+.- .+.-.+ ...+ .+.|+.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p---~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP---NL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc---cc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 64 2356677888888999998888887766543 11 11111110 011111 1122 344555
Q ss_pred HHHHHhhhhccCCCh-h----hHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011236 265 YLKKCEDIVSKSKDA-L----GYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEE 339 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 339 (490)
-++.+.......|.. . +..-.+-++...|+..++++.|+.+...+......+-..+.++|...+++++|..+++.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 556555422221321 1 12234556778899999999999888777656777889999999999999999999999
Q ss_pred HHhcCC-----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------CCCHH-HHHHHHHHHhccCCH
Q 011236 340 WELSCY-----CYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGK-------------TPTPN-SWSIIAAGYADKNNM 400 (490)
Q Consensus 340 ~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~~-~~~~l~~~~~~~~~~ 400 (490)
+..... .++......|.-+|...+++++|..+++++.+..+ .||-. .+..++..+.-.|+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 876531 22333357788999999999999999999987422 12222 345567778899999
Q ss_pred HHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHH
Q 011236 401 EKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGL 477 (490)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~ 477 (490)
.+|++.++++.. .-+-|......+...+...|...+|+..++.+....|. ..+....+.++...| ++|..+
T Consensus 433 ~~Ae~~le~l~~------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 433 PTAQKKLEDLSS------TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred HHHHHHHHHHHH------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999999999987 23345678888889999999999999999998888888 888888888888888 888888
Q ss_pred HHHHHh
Q 011236 478 LESMKA 483 (490)
Q Consensus 478 ~~~m~~ 483 (490)
.+...+
T Consensus 507 ~~~l~~ 512 (822)
T PRK14574 507 TDDVIS 512 (822)
T ss_pred HHHHHh
Confidence 877765
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=1.7e-16 Score=137.34 Aligned_cols=434 Identities=14% Similarity=0.125 Sum_probs=293.2
Q ss_pred CCCCcccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hh-HHHHHHHHHHhCCCCCChhhHH
Q 011236 32 KPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKR--FK-HALQVSEWMSGQGLAFSVHDHA 108 (490)
Q Consensus 32 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~-~a~~~~~~~~~~~~~~~~~~~~ 108 (490)
...+-+.|+..+ ..|...++.- +++.|.+.|++.+...-..|++.-+-.+. +. .-++-|-.|...|- .+..++
T Consensus 115 ~V~~E~nL~kmI-S~~EvKDs~i-lY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW- 190 (625)
T KOG4422|consen 115 QVETENNLLKMI-SSREVKDSCI-LYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW- 190 (625)
T ss_pred hhcchhHHHHHH-hhcccchhHH-HHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc-
Confidence 334445555444 3455566666 77888888877777776666655443322 11 12233333444331 222221
Q ss_pred HHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCc
Q 011236 109 VQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQH 188 (490)
Q Consensus 109 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 188 (490)
+.|.+.+ -+|+..++ +..+|.++|.++|+--+.+.|.+++++-.+...+.+..+||.+|.+-.-.
T Consensus 191 -------K~G~vAd--L~~E~~PK---T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~--- 255 (625)
T KOG4422|consen 191 -------KSGAVAD--LLFETLPK---TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS--- 255 (625)
T ss_pred -------ccccHHH--HHHhhcCC---CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh---
Confidence 2333333 34444432 67789999999999999999999999999888888999999998765432
Q ss_pred CcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH----HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHH-HH
Q 011236 189 EKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSS----MENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEK-AI 263 (490)
Q Consensus 189 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~ 263 (490)
...+++.+|.+..+.||..|+|+++.+..+.|+++. |.+++.+|+ +.|+.|+..+|..+|..+++.++..+ +.
T Consensus 256 -~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmK-eiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 -VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMK-EIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred -ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHH-HhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 238899999999999999999999999999998875 567888998 99999999999999999999888754 55
Q ss_pred HHHHHHhhhhc-------cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC----CCCh---hhHHHHHHHHHhcCC
Q 011236 264 IYLKKCEDIVS-------KSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCK----KQLN---RDYITMLGSLVKIGE 329 (490)
Q Consensus 264 ~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~---~~~~~l~~~~~~~~~ 329 (490)
.++.++..... ...|...|...+..|.+..+.+.|.++..-...... .|+. .-|..+....|+...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 55555543211 103456677778888888899999888773333221 1221 236677888888889
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-C--------H
Q 011236 330 LEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKN-N--------M 400 (490)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~--------~ 400 (490)
.+.-...|+.|.-+-+-|+..+...++++..-.|.++-.-+++..++..|..-+.....-++..+++.. . +
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 999999999998887888888889999999999999999999999988876555555555555555443 1 1
Q ss_pred HHH----HHHHHHHHHhhh-cCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc---hhhhH---HHHHHHHh
Q 011236 401 EKA----FECMKEALAVHE-ENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK---RNMYH---ALTEAHIR 469 (490)
Q Consensus 401 ~~a----~~~~~~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~---~l~~~~~~ 469 (490)
..+ ...+.+..+..+ ..+.........+.+.-.+.+.|..++|.++|..+.+.+.. ....+ -+++.-.+
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~ 573 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV 573 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh
Confidence 111 111111111000 01223345566777888889999999999999988655433 33445 44444444
Q ss_pred cC--CcHHHHHHHHHhCCC
Q 011236 470 SG--QEVDGLLESMKADDI 486 (490)
Q Consensus 470 ~g--~~a~~~~~~m~~~~~ 486 (490)
.. ..|...++-|...+.
T Consensus 574 ~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 574 SNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred cCCHHHHHHHHHHHHHcCc
Confidence 44 778888888866554
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=1.9e-16 Score=156.67 Aligned_cols=428 Identities=11% Similarity=0.016 Sum_probs=311.4
Q ss_pred cccccchhhhhhhhhcc--CCCCcccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 011236 15 NFTKTNLEIFTRAYRAV--KPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVS 92 (490)
Q Consensus 15 ~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 92 (490)
+....++..+....... .+.....++..+...|+..+++. .+++.. ............+...+...|++++|+++|
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~-~~eka~-~p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVID-VYERYQ-SSMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHH-HHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33344555555444432 21123477777777888887766 666665 212223333444456788889999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 011236 93 EWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSA 172 (490)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 172 (490)
+++.+.. +-++..+..++..+...++.++|++.++.+....|+...+..++..+...++..+|++.++++.+..+. +.
T Consensus 126 ~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~ 203 (822)
T PRK14574 126 QSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SE 203 (822)
T ss_pred HHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CH
Confidence 9999998 456788888889999999999999999999999888666755555555567776799999999998644 77
Q ss_pred chHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHH------HHHHHHHH---h--ccCC---hHHHHHHHHHHHhCCC
Q 011236 173 LNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFS------YRICINSY---G--ARSE---LSSMENVLQEMESQSH 238 (490)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~------~~~li~~~---~--~~g~---~~~a~~~~~~~~~~~~ 238 (490)
..+..++.++.+.|-...|.++..+-... +.+...- ....++.- . ...+ .+.|+.-++.+....+
T Consensus 204 e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 204 EVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 77888999999999999998777653321 1111111 11111111 0 1122 3445666666552222
Q ss_pred CCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC---
Q 011236 239 ISMDW-GTY----STVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCK--- 310 (490)
Q Consensus 239 ~~~~~-~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 310 (490)
..|.. ..| .-.+-++...|+..++++.|+.+...+.+ ....+-..+..+|...+++++|+.+|+.+....+
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~-~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~ 361 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK-MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF 361 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence 22322 222 22455788899999999999999987765 4566888999999999999999999998876542
Q ss_pred --CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------CCCc---hhHHHHHHHHHhcCCHHHHHHHHHH
Q 011236 311 --KQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCY-----------CYDF---RVPNIILLGYSQKGMIEKADAVLKE 374 (490)
Q Consensus 311 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 374 (490)
.++......|..++...+++++|..+++.+.+... .|+. ..+..++..+.-.|+..+|++.+++
T Consensus 362 ~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 362 RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12333457899999999999999999999987421 1221 1334567778899999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 011236 375 IVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIK 453 (490)
Q Consensus 375 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 453 (490)
+....+. |......+...+...|.+.+|.+.++.+.. +.|+. .+......++...|++++|..+.+.+.+.
T Consensus 442 l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~-------l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 442 LSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVES-------LAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-------hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9888765 899999999999999999999999988766 45665 66778888889999999999999999998
Q ss_pred ccc
Q 011236 454 VQK 456 (490)
Q Consensus 454 ~~~ 456 (490)
.|.
T Consensus 514 ~Pe 516 (822)
T PRK14574 514 SPE 516 (822)
T ss_pred CCC
Confidence 888
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=4.9e-16 Score=156.92 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHH
Q 011236 363 GMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVE 441 (490)
Q Consensus 363 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 441 (490)
|++++|...+++.++.. |+...|..+...+.+.|++++|+..+++++. ..|+. ..+..+..++...|+++
T Consensus 590 Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~-------l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 590 GQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALE-------LEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred CCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHCCCHH
Confidence 55555555555554432 3344555555555555555555555555555 22333 34444445555555555
Q ss_pred HHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHHHh
Q 011236 442 EVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESMKA 483 (490)
Q Consensus 442 ~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m~~ 483 (490)
+|...+++..+..|. +..+..+..++...| ++|+..+++..+
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555555555555555 555555555555555 555555555544
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=1.3e-15 Score=153.97 Aligned_cols=400 Identities=10% Similarity=-0.006 Sum_probs=195.0
Q ss_pred CCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-hcCHHHHHHHHHHccccCCChhHHHHH
Q 011236 66 KISELELQRV-IRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGK-VRGLESAETYFNSLNDEDKVDKLYGAL 143 (490)
Q Consensus 66 ~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~l 143 (490)
.|+....... ...+...++|++|++++.++.+.+ +.+......+...|.. .++ +.+..+++...+ .+..++..+
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk--~d~~l~~al 253 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF--TDPQSRITY 253 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc--cCHHHHHHH
Confidence 3345444444 777788888888888888888887 3455555556566666 355 666666553222 356677788
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCC-CCcchHH------------------------------HHHHHHHhcCCcCcHH
Q 011236 144 LNCYVREGLVDESLSLMQKMKEMGSF-GSALNYN------------------------------GIMCLYTNTGQHEKIP 192 (490)
Q Consensus 144 i~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~------------------------------~l~~~~~~~~~~~~a~ 192 (490)
...|.+.|+.++|.++++++...... |...+|- .++..+.+.++++.+.
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ 333 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 88888888888888888876554222 2222220 0122222222222222
Q ss_pred HH-----------------------------HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHh-CCCCCCC
Q 011236 193 DV-----------------------------LLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMES-QSHISMD 242 (490)
Q Consensus 193 ~~-----------------------------~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~ 242 (490)
++ +..|.+. .+-+....-.+.-.....|+.++|.++|+.... ..+...+
T Consensus 334 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 412 (987)
T PRK09782 334 KLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLS 412 (987)
T ss_pred HHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccC
Confidence 11 1111111 001222222222233455556666666555542 1111122
Q ss_pred HHHHHHHHHHHHHc-------------------------CCHHHHHHHHHHHhhhhccC-C--ChhhHHHHHHHHHhcCC
Q 011236 243 WGTYSTVANYYIIA-------------------------GLKEKAIIYLKKCEDIVSKS-K--DALGYNHLISHYASLGN 294 (490)
Q Consensus 243 ~~~~~~li~~~~~~-------------------------~~~~~a~~~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~ 294 (490)
.....-++..|.+. |+..++...++......+.. + +...|..+..++.. ++
T Consensus 413 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~ 491 (987)
T PRK09782 413 QTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TL 491 (987)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CC
Confidence 22222333333322 22222222222222211100 2 34455555555544 55
Q ss_pred hhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 011236 295 KDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKE 374 (490)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 374 (490)
.++|...+.+..... |+......+..++...|++++|...++++... +|+...+..+...+.+.|++++|...+++
T Consensus 492 ~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 492 PGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred cHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555555444433 23322223333334556666666666555432 23333344444555555666666666655
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 011236 375 IVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKV 454 (490)
Q Consensus 375 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 454 (490)
.++.++. +...+..+.......|++++|...++++++ +.|+...+..+..++.+.|++++|...+++.....
T Consensus 568 AL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~-------l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~ 639 (987)
T PRK09782 568 AEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLN-------IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE 639 (987)
T ss_pred HHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5554322 222222233333344566666666666555 33445555555555556666666666666666655
Q ss_pred cc-hhhhHHHHHHHHhcC--CcHHHHHHHHHh
Q 011236 455 QK-RNMYHALTEAHIRSG--QEVDGLLESMKA 483 (490)
Q Consensus 455 ~~-~~~~~~l~~~~~~~g--~~a~~~~~~m~~ 483 (490)
|. +..++.+..++...| ++|+..+++..+
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55 555555555565555 555555555544
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.6e-16 Score=138.55 Aligned_cols=388 Identities=12% Similarity=0.050 Sum_probs=255.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHH----HHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHH
Q 011236 82 RKRFKHALQVSEWMSGQGLAFSVHDHAVQ----LDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESL 157 (490)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 157 (490)
.+.+.+|+++|+..+.+-...+..+...+ ...+.+.|.+++|+.-|+...+..|+..+--.|+-++..-|+-++..
T Consensus 250 kr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmk 329 (840)
T KOG2003|consen 250 KREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMK 329 (840)
T ss_pred hhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHH
Confidence 34455555555554444322222222222 22345778889999999988888888665545555566678888888
Q ss_pred HHHHHHHhcCCCCCcchH--------HHHHHHHH---------hcCC--cCcHHHHHHHHHHCCCCCCHHH---------
Q 011236 158 SLMQKMKEMGSFGSALNY--------NGIMCLYT---------NTGQ--HEKIPDVLLDMKENGVPPDNFS--------- 209 (490)
Q Consensus 158 ~~~~~m~~~~~~p~~~~~--------~~l~~~~~---------~~~~--~~~a~~~~~~m~~~~~~p~~~~--------- 209 (490)
+.|.+|......||..-| ..|+.-.. +.+. .+++.-.--.++.--+.||-..
T Consensus 330 eaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~l 409 (840)
T KOG2003|consen 330 EAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESL 409 (840)
T ss_pred HHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHH
Confidence 889888765433333222 11111111 1111 1111111111111111111100
Q ss_pred ----H--------HHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHH---------------------------
Q 011236 210 ----Y--------RICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVA--------------------------- 250 (490)
Q Consensus 210 ----~--------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li--------------------------- 250 (490)
+ -.-...+.+.|+++.|.+++.-+. +.+-+.-...-+.|-
T Consensus 410 k~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~-~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry 488 (840)
T KOG2003|consen 410 KASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE-KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY 488 (840)
T ss_pred HHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH-hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc
Confidence 0 011234667888888888877766 322212111111111
Q ss_pred ---------HHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHH
Q 011236 251 ---------NYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITML 321 (490)
Q Consensus 251 ---------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 321 (490)
+.....|++++|.+.|++....... -....-.+.-.+-..|++++|++.|-++...-. .+......+.
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas--c~ealfniglt~e~~~~ldeald~f~klh~il~-nn~evl~qia 565 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS--CTEALFNIGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIA 565 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH--HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHH
Confidence 1112457889999999887664332 222222333446678999999999876655433 6777888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 011236 322 GSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNME 401 (490)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 401 (490)
..|....+..+|.+++.+.... ++.|+.+...|...|-+.|+-..|.+.+-.--.. ++-+..+...|...|....-++
T Consensus 566 niye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHH
Confidence 9999999999999999888775 6778889999999999999999999887655443 3447889999999999999999
Q ss_pred HHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHH-cCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC-CcHHHHH
Q 011236 402 KAFECMKEALAVHEENKFWRPKPSLVSSILDWLG-DNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG-QEVDGLL 478 (490)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g-~~a~~~~ 478 (490)
+++.+|+++.- ++|+..-|..++..|. +.|++..|..+++...+..|. ......|+..+...| .++.++-
T Consensus 644 kai~y~ekaal-------iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~key~ 716 (840)
T KOG2003|consen 644 KAINYFEKAAL-------IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEYA 716 (840)
T ss_pred HHHHHHHHHHh-------cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhHHHHH
Confidence 99999999865 7899999998887665 689999999999999999999 999999999999999 7777776
Q ss_pred HHHH
Q 011236 479 ESMK 482 (490)
Q Consensus 479 ~~m~ 482 (490)
+++.
T Consensus 717 ~kle 720 (840)
T KOG2003|consen 717 DKLE 720 (840)
T ss_pred HHHH
Confidence 6554
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.1e-15 Score=145.17 Aligned_cols=416 Identities=12% Similarity=0.020 Sum_probs=241.8
Q ss_pred CCCCcccHHHhhccCCCCCCChHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH
Q 011236 32 KPVARNNLYSRISPLGDPDVSLTPVLDQWVLEG--QKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAV 109 (490)
Q Consensus 32 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 109 (490)
+|...+.|.+.+.-.++...... +...+.... -..-...|-.+.+++...|++++|...|-+..+.......-.+.-
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~-la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWH-LAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 56667777777777777665555 333333221 112334577778888888888888888888777763222444455
Q ss_pred HHHHHHhhcCHHHHHHHHHHccccCCC-hhHHHHHHHHHHhcC----ChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 011236 110 QLDLIGKVRGLESAETYFNSLNDEDKV-DKLYGALLNCYVREG----LVDESLSLMQKMKEMGSFGSALNYNGIMCLYTN 184 (490)
Q Consensus 110 l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 184 (490)
+...+.+.|+++.+...|+.+....|+ ..+...|...|+..+ ..+.|..++.+..+.-+. |...|-.+...+-.
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHh
Confidence 678888888888888888888887774 566666666666664 345666666666655432 66667666666654
Q ss_pred cCCcCcHHHHHHHHH----HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCC--CCCCC------HHHHHHHHHH
Q 011236 185 TGQHEKIPDVLLDMK----ENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQS--HISMD------WGTYSTVANY 252 (490)
Q Consensus 185 ~~~~~~a~~~~~~m~----~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~------~~~~~~li~~ 252 (490)
.. ...++.+|.... ..+-.+.....|.+...+...|+++.|...|+...... ...++ ..+--.+..+
T Consensus 427 ~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 43 333366655443 34545677788888888888888888888888776220 11122 2222235555
Q ss_pred HHHcCCHHHHHHHHHHHhhhhcc--------------------------------CCChhhHHHHHHHHHhcCChhHHHH
Q 011236 253 YIIAGLKEKAIIYLKKCEDIVSK--------------------------------SKDALGYNHLISHYASLGNKDEMMK 300 (490)
Q Consensus 253 ~~~~~~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~ 300 (490)
+-..++.+.|.+.|..+....+. ..++..++.+...+.....+..|.+
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc
Confidence 55556666666666665554331 0222223333333333333333433
Q ss_pred HHHHHHHhcC-CCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHH
Q 011236 301 FWGLQKIKCK-KQLNRDYITMLGSLVK------------IGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEK 367 (490)
Q Consensus 301 ~~~~~~~~~~-~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 367 (490)
-|........ .+|.++...|.+.|.. .+..++|.++|.++++. .+-|...-|-+...++..|++.+
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchH
Confidence 3332222211 2344444444443321 23345566666666654 23355555556666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHH
Q 011236 368 ADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFV 447 (490)
Q Consensus 368 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 447 (490)
|..+|.+..+.... +..+|-.+..+|..+|++..|+++|+.... +..-.-++.+...|.+++.+.|++.+|.+.+
T Consensus 665 A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lk----kf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 665 ARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLK----KFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred HHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHH----HhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 66666666665432 445566666666666666666666666655 1223334456666666666666666666666
Q ss_pred HHHHhcccc
Q 011236 448 SSLKIKVQK 456 (490)
Q Consensus 448 ~~~~~~~~~ 456 (490)
.......|.
T Consensus 740 l~a~~~~p~ 748 (1018)
T KOG2002|consen 740 LKARHLAPS 748 (1018)
T ss_pred HHHHHhCCc
Confidence 666666665
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=9.8e-16 Score=145.62 Aligned_cols=370 Identities=13% Similarity=0.025 Sum_probs=261.0
Q ss_pred CCCcccHHHhhccCCCCCCChHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 011236 33 PVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKIS--ELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQ 110 (490)
Q Consensus 33 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 110 (490)
..+|-.+-+.+...|+.+.|.. .+-+-. +..++ +..+..|...+...|+.+.+...|+.+.+.. +-+..+...+
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~-yY~~s~--k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iL 382 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFK-YYMESL--KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKIL 382 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHH-HHHHHH--ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 3446677788888899888877 333222 33333 4456677888999999999999999999887 5667777777
Q ss_pred HHHHHhhc----CHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHH----hcCCCCCcchHHHHHHH
Q 011236 111 LDLIGKVR----GLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMK----EMGSFGSALNYNGIMCL 181 (490)
Q Consensus 111 ~~~~~~~~----~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~p~~~~~~~l~~~ 181 (490)
...|+..+ ..+.|..++.......| |...|-.+...+-...-+ .++.+|.... ..+-.+.+...|.+...
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 77777665 45677777777766655 677777777766554433 3366665543 34445667777888888
Q ss_pred HHhcCCcCcHHHHHHHHHHC---CCCCCHH-------HHHHHHHHHhcc-------------------------------
Q 011236 182 YTNTGQHEKIPDVLLDMKEN---GVPPDNF-------SYRICINSYGAR------------------------------- 220 (490)
Q Consensus 182 ~~~~~~~~~a~~~~~~m~~~---~~~p~~~-------~~~~li~~~~~~------------------------------- 220 (490)
....|++++|...|...... .-.+|.. -|| +....-..
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMA 540 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHH
Confidence 88888888888888776553 1122221 122 22222222
Q ss_pred ---CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHh------
Q 011236 221 ---SELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYAS------ 291 (490)
Q Consensus 221 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 291 (490)
+...+|...+.... +.+- .++..++.+...+.+...+..|..-|+.+.+.....+|.++.-.|...|..
T Consensus 541 ~~k~~~~ea~~~lk~~l-~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~ 618 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDAL-NIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPS 618 (1018)
T ss_pred HhccCcHHHHHHHHHHH-hccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccc
Confidence 34445555555554 2221 233344446667777777777777777666555443577777677775543
Q ss_pred ------cCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCH
Q 011236 292 ------LGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMI 365 (490)
Q Consensus 292 ------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 365 (490)
.+..++|+++|.+.+...+ .+.+.-+-+.-.++..|++..|..+|.+..+... -...+|-.+.++|..+|++
T Consensus 619 rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 619 RNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHH
Confidence 3456789999998888776 7788888899999999999999999999998744 3556788899999999999
Q ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 366 EKADAVLKEIVKK-GKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 366 ~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
..|+++|+...+. ...-++.....|..++.+.|.+.+|.+.+..+..
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999987654 4455788899999999999999999999999988
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=3.9e-14 Score=122.93 Aligned_cols=240 Identities=13% Similarity=0.135 Sum_probs=161.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccC--CChhHHHH
Q 011236 65 QKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED--KVDKLYGA 142 (490)
Q Consensus 65 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~ 142 (490)
.+.+..+|..+|.++|+.-..+.|.+++++...........+++.+|.+-.-..+ ..++.+|.... ||..++|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 4557777888888888887778888888877766667777777777765443222 56666666543 78888888
Q ss_pred HHHHHHhcCChhH----HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCc-HHHHHHHHHHC--C--CC---C-CHHH
Q 011236 143 LLNCYVREGLVDE----SLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEK-IPDVLLDMKEN--G--VP---P-DNFS 209 (490)
Q Consensus 143 li~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~~--~--~~---p-~~~~ 209 (490)
++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... | ++ | |...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 8888888887654 45677778888888888888888887777777654 33344444321 1 22 2 3345
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCC---CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHH
Q 011236 210 YRICINSYGARSELSSMENVLQEMESQSH---ISMD---WGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYN 283 (490)
Q Consensus 210 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (490)
|...+..|.+..+.+.|.++..-.....+ +.|+ ..-|..+..+.|.....+.-...|+.|...... |+..+..
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~-p~~~~m~ 437 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF-PHSQTMI 437 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec-CCchhHH
Confidence 66677777777777777777665542111 2222 233456667777777777778888887766666 7777777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhc
Q 011236 284 HLISHYASLGNKDEMMKFWGLQKIKC 309 (490)
Q Consensus 284 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 309 (490)
.++++....|+++-.-++|..+...+
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 77777777777777777777666554
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=3.7e-14 Score=134.14 Aligned_cols=380 Identities=15% Similarity=0.126 Sum_probs=286.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHH
Q 011236 70 LELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYV 148 (490)
Q Consensus 70 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~ 148 (490)
...-.....+...|++++|.+++.+++++. +..+..|..+...|-..|+.+.+...+-......| |...|..+.....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 333344444555699999999999999998 67889999999999999999999999888777776 6789999999999
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCChH
Q 011236 149 REGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFS----YRICINSYGARSELS 224 (490)
Q Consensus 149 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~li~~~~~~g~~~ 224 (490)
+.|+++.|.-+|.+..+..+. +...+-.-+..|-+.|+...|...|.++.+...+.|..- -..+++.+...++-+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999998544 555555667788999999999999999988644223222 234456677777779
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc---------------------CCChhhHH
Q 011236 225 SMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSK---------------------SKDALGYN 283 (490)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---------------------~~~~~~~~ 283 (490)
.|.+.++......+-..+...++.++..|.+...++.|......+...... .++...|.
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 999998887733333466777888999999999999999888877651111 02222221
Q ss_pred ----HHHHHHHhcCChhHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 011236 284 ----HLISHYASLGNKDEMMKFWGLQKIKC--KKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILL 357 (490)
Q Consensus 284 ----~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (490)
-+.-++.+....+....+........ +.-+...|.-+..+|...|++.+|..+|..+......-+...|-.+..
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 12223344444444444444444444 344556789999999999999999999999998755556778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh---hcCcCCCcchhhHHHHHHHH
Q 011236 358 GYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVH---EENKFWRPKPSLVSSILDWL 434 (490)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~p~~~~~~~l~~~~ 434 (490)
+|...|..++|...|+..+...+. +...--.|...+.+.|+.++|.+.++.+..-. .+..+..|+..........+
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 999999999999999999987544 66677788888999999999999999865411 01234566666666777778
Q ss_pred HcCCCHHHHHHHHHHHHh
Q 011236 435 GDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 435 ~~~g~~~~a~~~~~~~~~ 452 (490)
...|+.++-..+...|..
T Consensus 537 ~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVD 554 (895)
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 888998886666555554
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=4e-17 Score=145.32 Aligned_cols=263 Identities=15% Similarity=0.115 Sum_probs=98.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC-CCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 011236 142 ALLNCYVREGLVDESLSLMQKMKEMG-SFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGAR 220 (490)
Q Consensus 142 ~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 220 (490)
.+...+.+.|++++|++++++..... .+.|...|..+...+...++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666667777777777775544333 2224444555555666677777777777777665432 44455556655 577
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHH
Q 011236 221 SELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMK 300 (490)
Q Consensus 221 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 300 (490)
+++++|.++++..- +.. ++...+..++..+...++++++.++++.+........+...|..+...+.+.|+.++|++
T Consensus 91 ~~~~~A~~~~~~~~-~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAY-ERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccc-ccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777776654 222 344555667777777778888777777766433221466677777777778888888888
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011236 301 FWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGK 380 (490)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 380 (490)
.+++.....+ .+......++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|+..|++..+..+
T Consensus 168 ~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 168 DYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 8887777665 456667777777888888888777777777653 55666777788888888888888888888777654
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 381 TPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 381 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
. |+.....+..++...|+.++|.++.+++..
T Consensus 246 ~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 D-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T--HHHHHHHHHHHT-----------------
T ss_pred c-cccccccccccccccccccccccccccccc
Confidence 4 777777888888888888888887777654
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=1.3e-12 Score=119.43 Aligned_cols=433 Identities=9% Similarity=0.056 Sum_probs=256.1
Q ss_pred HHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCChhhHHHHHHHH
Q 011236 39 LYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWM----SGQGLAFSVHDHAVQLDLI 114 (490)
Q Consensus 39 l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~ 114 (490)
|.-+|++..-++.+-. ++...++ .++-+...|.+-...--.+|+.+....+++.- ...|+..+.+.+..=...|
T Consensus 412 LwlAlarLetYenAkk-vLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 412 LWLALARLETYENAKK-VLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3344444444444333 5554433 35556666665555555666666666665542 3345555555555555566
Q ss_pred HhhcCHHHHHHHHHHccccCC----ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCc
Q 011236 115 GKVRGLESAETYFNSLNDEDK----VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEK 190 (490)
Q Consensus 115 ~~~~~~~~A~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 190 (490)
-..|..-.+..+.......+. -..+|+.-...|.+.+.++-|..+|....+--+ -+...|......--..|..++
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHH
Confidence 666666666555555554431 234566666666666666666666666655422 244555555555555566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 011236 191 IPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCE 270 (490)
Q Consensus 191 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 270 (490)
...+|++.... ++-....|-.....+-..|+...|..++.... +.+. -+...|-.-+..-..+.+++.|..+|.+..
T Consensus 569 l~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af-~~~p-nseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 569 LEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAF-EANP-NSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHH-HhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 66666666554 22233344444455555666666666666665 4443 345555555566666666666666666655
Q ss_pred hhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 011236 271 DIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFR 350 (490)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 350 (490)
... ++...|.--+...--.++.++|.+++++.++..+ .-...|..+.+.+-+.++++.|...|..-.+. ++..+.
T Consensus 646 ~~s---gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ip 720 (913)
T KOG0495|consen 646 SIS---GTERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIP 720 (913)
T ss_pred ccC---CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCch
Confidence 432 3444444444444445566666666665555543 33345555666666666666666666555443 333444
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcC-------------
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEEN------------- 417 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------- 417 (490)
.|-.|...=-+.|.+-+|..++++..-+++. +...|-..|+.-.+.|+.+.|..++.++++..|..
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccC
Confidence 5555555555566666666666666665554 55666666666666666666666655555522100
Q ss_pred -----------cCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHHHh
Q 011236 418 -----------KFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESMKA 483 (490)
Q Consensus 418 -----------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m~~ 483 (490)
....-|++....+...|....+++.|.+.|.+..+.+|+ -++|.-+...+.++| ++-.+++++-..
T Consensus 800 ~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 800 PQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred cccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 123456777788888888999999999999999999999 999999999999999 666667666543
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=6.5e-14 Score=130.42 Aligned_cols=283 Identities=16% Similarity=0.150 Sum_probs=196.7
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcch-HHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCChHHH
Q 011236 150 EGLVDESLSLMQKMKEMGSFGSALN-YNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYR--ICINSYGARSELSSM 226 (490)
Q Consensus 150 ~g~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a 226 (490)
.|+++.|.+.+....+..- ++.. |.....+..+.|+++.+.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 5888888877776555421 2222 333344446778888888888888763 34443322 335667778888888
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCCh-------hhHHHHHHHHHhcCChhHHH
Q 011236 227 ENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDA-------LGYNHLISHYASLGNKDEMM 299 (490)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~ 299 (490)
...++++. +.++ -+...+..+...|.+.|++++|.+++..+.+.... ++. .+|..++.......+.+...
T Consensus 173 l~~l~~~~-~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 173 RHGVDKLL-EVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG-DEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHH-hcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88888887 5553 55677777888888888888888888888776553 211 12333344344445556666
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011236 300 KFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKG 379 (490)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 379 (490)
++|+...... +.++.....+..++...|+.++|..++++..+. +|+... .++.+....++.+++++..+...+..
T Consensus 250 ~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC
Confidence 6666544333 256777888888888889999998888888774 344322 23444455688888888888888876
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 380 KTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 380 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
+. |+..+..+...|.+.+++++|.+.|+.+.+ ..|+..++..+...+.+.|+.++|.+++++...
T Consensus 325 P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~-------~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GD-TPLLWSTLGQLLMKHGEWQEASLAFRAALK-------QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55 677788888888889999999999988887 568888888888888889999999888887644
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.3e-13 Score=121.63 Aligned_cols=396 Identities=13% Similarity=0.022 Sum_probs=268.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhhcCHHHHHHHHHHccccCCC-hhHHHHHHHHHHh
Q 011236 72 LQRVIRQLRSRKRFKHALQVSEWMSGQGLAFS-VHDHAVQLDLIGKVRGLESAETYFNSLNDEDKV-DKLYGALLNCYVR 149 (490)
Q Consensus 72 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~ 149 (490)
+....+-|-++|++++|++.|.+.+... |+ +.-|.....+|...|+|+...+.-....+.+|+ +.++..-..++-+
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 4455566788999999999999999986 45 778888888999999999999998888888886 6677777888888
Q ss_pred cCChhHHHHHHHHHHhc-CCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHH-CC--CCCCHHHHHHHHHHHh-------
Q 011236 150 EGLVDESLSLMQKMKEM-GSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKE-NG--VPPDNFSYRICINSYG------- 218 (490)
Q Consensus 150 ~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~--~~p~~~~~~~li~~~~------- 218 (490)
.|++++|+.=+.-..-. |+. |..+--.+=+.+-+. +..-.++-.+ .+ +-|.....++....+-
T Consensus 196 lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~-----a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQ-----AMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHH-----HHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccc
Confidence 89988876433222111 111 111111111111110 1111111111 11 2233322222222211
Q ss_pred ----------------c--cC---ChHHHHHHHHHHHhCCCCCC-----CH------HHHHHHHHHHHHcCCHHHHHHHH
Q 011236 219 ----------------A--RS---ELSSMENVLQEMESQSHISM-----DW------GTYSTVANYYIIAGLKEKAIIYL 266 (490)
Q Consensus 219 ----------------~--~g---~~~~a~~~~~~~~~~~~~~~-----~~------~~~~~li~~~~~~~~~~~a~~~~ 266 (490)
. .+ .+..|...+.+-.......+ |. .+......-+.-.|+.-.|..-|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 0 01 22223222222110111111 11 11111112234467888899999
Q ss_pred HHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 011236 267 KKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYC 346 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 346 (490)
+..+...+. +...|.-+..+|....+.++....|.+....++ .++.+|..-.+...-.+++++|..=|++..... +
T Consensus 350 ~~~I~l~~~--~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-p 425 (606)
T KOG0547|consen 350 DAAIKLDPA--FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-P 425 (606)
T ss_pred HHHHhcCcc--cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-h
Confidence 998887664 334477788889999999999999998777766 677788888888888899999999999998852 2
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhh
Q 011236 347 YDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSL 426 (490)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~ 426 (490)
-+...|..+..+..+.+++++++..|++.+++=+. .+..|+.....+..+++++.|.+.|+.++++.+...++..+...
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 25556777777778889999999999999987433 67889999999999999999999999999977665555555433
Q ss_pred --HHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHH
Q 011236 427 --VSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESM 481 (490)
Q Consensus 427 --~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m 481 (490)
...++..-.+ +++..|..+++++.+.+|. ...|..|...-.+.| ++|+++|++-
T Consensus 505 lV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 505 LVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 2333333333 8999999999999999999 999999999999999 9999999864
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=1.3e-16 Score=142.05 Aligned_cols=261 Identities=15% Similarity=0.096 Sum_probs=106.3
Q ss_pred HHHHHHHhhcCHHHHHHHHHH-cccc-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 011236 109 VQLDLIGKVRGLESAETYFNS-LNDE-DK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNT 185 (490)
Q Consensus 109 ~l~~~~~~~~~~~~A~~~~~~-~~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 185 (490)
.+...+.+.|+++.|.++++. +... +| +...|..+.......++++.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 456777788888888888854 3343 34 4566677777777788888888888888877654 66667777776 688
Q ss_pred CCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011236 186 GQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIY 265 (490)
Q Consensus 186 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 265 (490)
+++++|.+++....+.. ++...+..++..+...++++++..+++.+......+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887765542 4566677788888888899998888888764444556777888888888889999999999
Q ss_pred HHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 011236 266 LKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCY 345 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 345 (490)
+++..+..| .|......++..+...|+.+++.++++......+ .++..+..+..++...|+.++|...+++..+. .
T Consensus 169 ~~~al~~~P--~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~-~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~ 244 (280)
T PF13429_consen 169 YRKALELDP--DDPDARNALAWLLIDMGDYDEAREALKRLLKAAP-DDPDLWDALAAAYLQLGRYEEALEYLEKALKL-N 244 (280)
T ss_dssp HHHHHHH-T--T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H-TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-S
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc-CHHHHHHHHHHHhccccccccccccccccccc-c
Confidence 998888766 4677788888888888888888888887666653 56667788888888899999999999988875 3
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011236 346 CYDFRVPNIILLGYSQKGMIEKADAVLKEIVK 377 (490)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 377 (490)
+.|......+.+++...|+.++|..+.++...
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 44777778888888889999999888776643
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=1.3e-13 Score=128.34 Aligned_cols=283 Identities=11% Similarity=0.054 Sum_probs=191.8
Q ss_pred hcCHHHHHHHHHHccccCCChhHHHHH-HHHHHhcCChhHHHHHHHHHHhcCCCCCcchHH--HHHHHHHhcCCcCcHHH
Q 011236 117 VRGLESAETYFNSLNDEDKVDKLYGAL-LNCYVREGLVDESLSLMQKMKEMGSFGSALNYN--GIMCLYTNTGQHEKIPD 193 (490)
Q Consensus 117 ~~~~~~A~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~ 193 (490)
.|+++.|.+.+.......+++..+..+ .....+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 578888887777665544333333333 34446778888888888887765 33433222 33556777788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHH
Q 011236 194 VLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDW-------GTYSTVANYYIIAGLKEKAIIYL 266 (490)
Q Consensus 194 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~ 266 (490)
.++++.+... -+...+..+...|.+.|++++|.+++..+. +.+..++. .+|..++.......+.+...+++
T Consensus 175 ~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~-k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMA-KAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888877542 355667777788888888888888888887 44442222 12223333333444556666666
Q ss_pred HHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 011236 267 KKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYC 346 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 346 (490)
+.+....+ .++.....+...+...|+.++|.+++++..... ++.. ..++.+....++.+++.+..+...+. .+
T Consensus 253 ~~lp~~~~--~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~-~P 325 (398)
T PRK10747 253 KNQSRKTR--HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ-HG 325 (398)
T ss_pred HhCCHHHh--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHH--HHHHHhhccCCChHHHHHHHHHHHhh-CC
Confidence 66544333 567777888888888888888888888776632 4442 22334444568888888888888876 33
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 347 YDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
-|......+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566778888888888888888888888875 57788888888888888888888888888765
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=1.7e-12 Score=123.21 Aligned_cols=400 Identities=15% Similarity=0.074 Sum_probs=225.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCCh--h----HHH
Q 011236 68 SELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVD--K----LYG 141 (490)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~----~~~ 141 (490)
|...|..+.....+.|.+++|.-.|.+.++.. |++....---+..|-+.|+...|...|.++.+..|.+ . .--
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~ 284 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR 284 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH
Confidence 33444444444444444444444444444443 2222222333344444444444444444444433310 0 111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc-CCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCC------------------
Q 011236 142 ALLNCYVREGLVDESLSLMQKMKEM-GSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENG------------------ 202 (490)
Q Consensus 142 ~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~------------------ 202 (490)
..++.+...++-+.|++.++..... +-.-+...+++++..+.+...++.+......+....
T Consensus 285 ~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 285 RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 1233333344444444444444331 111234455666666666666666666666555411
Q ss_pred ---------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 011236 203 ---------VPPDNFSYRICINSYGARSELSSMENVLQEMESQSH--ISMDWGTYSTVANYYIIAGLKEKAIIYLKKCED 271 (490)
Q Consensus 203 ---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 271 (490)
+.++..++ -+.-++.+....+....+..... ..+ +.-++..|.-+..+|...|.+.+|+.+|..+..
T Consensus 365 ~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred cccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 11222221 11122223333333333333333 333 334566777788899999999999999999888
Q ss_pred hhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh--------c
Q 011236 272 IVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWEL--------S 343 (490)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~ 343 (490)
.... .+...|-.+..+|...|..++|.+.|+..+...+ .+...-..|...+-+.|+.++|.+.+..+.. .
T Consensus 443 ~~~~-~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~ 520 (895)
T KOG2076|consen 443 REGY-QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEAC 520 (895)
T ss_pred Cccc-cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhc
Confidence 7666 6778899999999999999999999998877665 5555666777778889999999999888542 2
Q ss_pred CCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------------------------------------
Q 011236 344 CYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKG-------------------------------------------- 379 (490)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-------------------------------------------- 379 (490)
+..|+........+.+.+.|+.++=..+...|+...
T Consensus 521 a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 600 (895)
T KOG2076|consen 521 AWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDN 600 (895)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchH
Confidence 234444444555566666776655433332222110
Q ss_pred -----C-CC-----------CH----HHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch---hhHHHHHHHHH
Q 011236 380 -----K-TP-----------TP----NSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP---SLVSSILDWLG 435 (490)
Q Consensus 380 -----~-~p-----------~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~---~~~~~l~~~~~ 435 (490)
. .+ +. ..+.-++..+++.+++++|+.+...+.... .-..++. ..-...+.+..
T Consensus 601 ~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~---~f~~~~~~~k~l~~~~l~~s~ 677 (895)
T KOG2076|consen 601 VMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAY---IFFQDSEIRKELQFLGLKASL 677 (895)
T ss_pred HhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh---hhhccHHHHHHHHHHHHHHHH
Confidence 0 00 00 123455667778888888888888887722 1122222 12234455667
Q ss_pred cCCCHHHHHHHHHHHHhc-----ccc-hhhhHHHHHHHHhcCCcHH
Q 011236 436 DNRDVEEVEAFVSSLKIK-----VQK-RNMYHALTEAHIRSGQEVD 475 (490)
Q Consensus 436 ~~g~~~~a~~~~~~~~~~-----~~~-~~~~~~l~~~~~~~g~~a~ 475 (490)
..+++..|...++.+... .+- ...|+...+.+.+.|+++.
T Consensus 678 ~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~ 723 (895)
T KOG2076|consen 678 YARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVC 723 (895)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999888888777 555 7777777777777774443
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.69 E-value=1.8e-13 Score=128.23 Aligned_cols=293 Identities=10% Similarity=0.043 Sum_probs=136.8
Q ss_pred hhcCHHHHHHHHHHccccCCChhH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHH
Q 011236 116 KVRGLESAETYFNSLNDEDKVDKL-YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDV 194 (490)
Q Consensus 116 ~~~~~~~A~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 194 (490)
..|+++.|.+.+....+..|+... +-....++.+.|+.+.|.+.+.+..+....+.....-.....+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 456666666666665555454222 2333455555666666666666655442221112222235555556666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHH---HHcCCHHHHHHHHHHHh
Q 011236 195 LLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYS-TVANYY---IIAGLKEKAIIYLKKCE 270 (490)
Q Consensus 195 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~---~~~~~~~~a~~~~~~~~ 270 (490)
++.+.+... -+...+..+...+...|++++|.+.+..+. +.++ ++...+. ....++ ...+..+++.+.+..+.
T Consensus 176 l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~-k~~~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 176 VDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMA-KAGL-FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HcCC-CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 666665432 244455566666666666666666666665 4443 2222221 111111 22222222223333333
Q ss_pred hhhccC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 011236 271 DIVSKS--KDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDY-ITMLGSLVKIGELEEAEKMLEEWELSCYCY 347 (490)
Q Consensus 271 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 347 (490)
...+.. .+...+..+...+...|+.++|.+++++.....+......+ ..........++.+.+.+.++...+. .+-
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~ 331 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDD 331 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCC
Confidence 222210 24455555555666666666666666655554431111110 11111112234455555555554443 111
Q ss_pred Cc--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 348 DF--RVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 348 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.+.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 333445555555555555555555333322344555555555555555555555555555443
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=1.2e-13 Score=129.38 Aligned_cols=299 Identities=11% Similarity=0.006 Sum_probs=219.8
Q ss_pred HHHHHHHH--HhcCChhHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhhcCHHHHHHHHHHccccCCChh--HHHHHHHH
Q 011236 72 LQRVIRQL--RSRKRFKHALQVSEWMSGQGLAFSVHD-HAVQLDLIGKVRGLESAETYFNSLNDEDKVDK--LYGALLNC 146 (490)
Q Consensus 72 ~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~li~~ 146 (490)
...+.+++ ...|+++.|.+.+....+.. |++.. +..........|+.+.|.+.+....+..|+.. +.-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 33444444 35799999999999887764 34333 34456778889999999999999877666543 44446888
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHH-HHHHHH---hccCC
Q 011236 147 YVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYR-ICINSY---GARSE 222 (490)
Q Consensus 147 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~---~~~g~ 222 (490)
+...|+++.|...++.+.+..+. +...+..+...+...|++++|.+.+..+.+.++. +...+. .-..++ ...+.
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998755 7778899999999999999999999999998764 333332 111221 22233
Q ss_pred hHHHHHHHHHHHhCCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhh-HHHHHHHHHhcCChhHH
Q 011236 223 LSSMENVLQEMESQSH---ISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALG-YNHLISHYASLGNKDEM 298 (490)
Q Consensus 223 ~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a 298 (490)
.+++.+.+..+. +.. .+.+...+..+...+...|+.++|.+++++..+..+. ..... ...........++.+.+
T Consensus 241 ~~~~~~~L~~~~-~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd-~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 241 ADEGIDGLLNWW-KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD-DRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HhcCHHHHHHHH-HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-cccchhHHHHHhhhcCCCChHHH
Confidence 333334555544 222 1237788888999999999999999999999886653 21111 12222223345788889
Q ss_pred HHHHHHHHHhcCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011236 299 MKFWGLQKIKCKKQLN--RDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIV 376 (490)
Q Consensus 299 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 376 (490)
.+.++...+..+ .++ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 319 ~~~~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 319 EKLIEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999987777655 344 56778999999999999999999964444457888888999999999999999999999865
Q ss_pred H
Q 011236 377 K 377 (490)
Q Consensus 377 ~ 377 (490)
.
T Consensus 398 ~ 398 (409)
T TIGR00540 398 G 398 (409)
T ss_pred H
Confidence 4
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.8e-12 Score=110.36 Aligned_cols=298 Identities=15% Similarity=0.126 Sum_probs=220.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCC
Q 011236 145 NCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGV--PPDNFSYRICINSYGARSE 222 (490)
Q Consensus 145 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~ 222 (490)
.++-...+.+++..-.+.....|++-+...-+....+.-...++++|+.+|+++.+.+. --|..+|+.++-.--....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 44555567777777777777777764444444445555567789999999999887632 1255677776654333222
Q ss_pred hH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHH
Q 011236 223 LS-SMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKF 301 (490)
Q Consensus 223 ~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 301 (490)
+. .|..+++-= . --+.|...+.+-|+-.++.++|..+|++..+.++ .....|+.+..-|....+...|.+-
T Consensus 315 Ls~LA~~v~~id----K--yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp--~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 315 LSYLAQNVSNID----K--YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP--KYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHhc----c--CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc--chhHHHHHhhHHHHHhcccHHHHHH
Confidence 22 233332211 1 3345666788888999999999999999988776 5778899999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011236 302 WGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKT 381 (490)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 381 (490)
|+..+.-++ .|-..|-.+.++|.-.+...-|.-.|++..+. -+.|...|.+|..+|.+.++.++|++.|......|-.
T Consensus 387 YRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 387 YRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 998888776 78889999999999999999999999999886 3457889999999999999999999999999987754
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 011236 382 PTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIK 453 (490)
Q Consensus 382 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 453 (490)
+...+..|...|-+.++.++|.+.|++-++.......+.|.. ....-|...+.+.+++++|..........
T Consensus 465 -e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 465 -EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred -chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 668899999999999999999999988877331111233322 23334556677788888887665554443
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=6.4e-14 Score=122.53 Aligned_cols=403 Identities=14% Similarity=0.101 Sum_probs=269.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhhcCHHHHHHHHHHccccCCC------hhHHH
Q 011236 69 ELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDH-AVQLDLIGKVRGLESAETYFNSLNDEDKV------DKLYG 141 (490)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~ 141 (490)
...+..|...|..+..+.+|+..|+-+.+...-|+.-.. ..+...+.+.+.+..|+.+++.....-|+ ....+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 334455556666667788889888888877654443332 22445677888899999998876655432 23455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCC------------CHHH
Q 011236 142 ALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPP------------DNFS 209 (490)
Q Consensus 142 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p------------~~~~ 209 (490)
.+.-.+.+.|+++.|+.-|+...+. .|+..+--.|+-++..-|+.++..+.|..|+.-...| +...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 5666788999999999999998776 4676655455555666789999999999998643333 3333
Q ss_pred HHHHHH-----HHhccC--ChHHHHHHHHHHHhCCCCCCCHH---------------------HHHHHHHHHHHcCCHHH
Q 011236 210 YRICIN-----SYGARS--ELSSMENVLQEMESQSHISMDWG---------------------TYSTVANYYIIAGLKEK 261 (490)
Q Consensus 210 ~~~li~-----~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~---------------------~~~~li~~~~~~~~~~~ 261 (490)
.+..|. -.-+.+ +.++++-.--++. ..-+.|+-. .--.-..-|.+.|+++.
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kii-apvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKII-APVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHh-ccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 332221 111111 2222222222222 222222210 00112356899999999
Q ss_pred HHHHHHHHhhhhccCCChhhHHHHH-H----------------------------------HHHhcCChhHHHHHHHHHH
Q 011236 262 AIIYLKKCEDIVSKSKDALGYNHLI-S----------------------------------HYASLGNKDEMMKFWGLQK 306 (490)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~~l~-~----------------------------------~~~~~~~~~~a~~~~~~~~ 306 (490)
|+++++-..+......+...-|..+ . .....|++++|.+.|++.+
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 9999988765433211111111100 0 0113678888888888776
Q ss_pred HhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 011236 307 IKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNS 386 (490)
Q Consensus 307 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 386 (490)
.... .-......+.-.+...|++++|.+.|-++... +..+..+...+...|-...+...|++++-+.... ++.|+..
T Consensus 518 ~nda-sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 518 NNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred cCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 6543 22333334444567788999999988877654 4446667777888888888999999988777665 3448889
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccchhhhHHHHHH
Q 011236 387 WSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQKRNMYHALTEA 466 (490)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 466 (490)
...|...|-+.|+-..|.++.-+-.+ -++-|..+...|...|....-++.+..+|++..-..|...-|..++..
T Consensus 595 lskl~dlydqegdksqafq~~ydsyr------yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmias 668 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYR------YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhccc------ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 99999999999999999988766544 466778999999999999999999999999998888887888888777
Q ss_pred HHh-cC--CcHHHHHHHHHh
Q 011236 467 HIR-SG--QEVDGLLESMKA 483 (490)
Q Consensus 467 ~~~-~g--~~a~~~~~~m~~ 483 (490)
|.+ .| ++|+++++....
T Consensus 669 c~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHhcccHHHHHHHHHHHHH
Confidence 655 55 999999988754
No 42
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=1.4e-11 Score=112.83 Aligned_cols=401 Identities=10% Similarity=-0.001 Sum_probs=318.6
Q ss_pred CCCCcccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 011236 32 KPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQL 111 (490)
Q Consensus 32 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 111 (490)
++.++.+++..+...|.-++. -..+|..-...|.+.+.++-|..+|...++-. +-....+....
T Consensus 494 sv~TcQAIi~avigigvEeed---------------~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~ 557 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEED---------------RKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAA 557 (913)
T ss_pred ChhhHHHHHHHHHhhccccch---------------hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHH
Confidence 555566666665555442222 23466677788888899999999999988875 45667777777
Q ss_pred HHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCc
Q 011236 112 DLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEK 190 (490)
Q Consensus 112 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 190 (490)
..--..|..++-..+|++....-| ....|-.....+...|++..|..++....+.... +...|-..+..-..+..++.
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~er 636 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELER 636 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHH
Confidence 777788999999999999887766 4566777788888899999999999999888655 77788888888889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 011236 191 IPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCE 270 (490)
Q Consensus 191 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 270 (490)
|..+|.+... ..|+...|..-++..--.++.++|.+++++.. + .++.-...|-.+...+-+.++++.|...|..=.
T Consensus 637 aR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~l-k-~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~ 712 (913)
T KOG0495|consen 637 ARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEAL-K-SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT 712 (913)
T ss_pred HHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHH-H-hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 9999998876 45777777777777777899999999999887 2 231334567778888899999999999998866
Q ss_pred hhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 011236 271 DIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFR 350 (490)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 350 (490)
+..+ ..+..|..+...--+.|.+-.|..++++....++ .+...|...|+.=.+.|..++|..++.+.++. ++.+..
T Consensus 713 k~cP--~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~ 788 (913)
T KOG0495|consen 713 KKCP--NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGL 788 (913)
T ss_pred ccCC--CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccch
Confidence 6554 4667788888888889999999999998888776 78889999999999999999999999999887 566777
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHH
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSS 429 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~ 429 (490)
.|..-|....+.++-.+....+++ +.-|+.+.-.+...|....++++|.+.|.+++. +.||. .+|..
T Consensus 789 LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk-------~d~d~GD~wa~ 856 (913)
T KOG0495|consen 789 LWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK-------KDPDNGDAWAW 856 (913)
T ss_pred hHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-------cCCccchHHHH
Confidence 888888777777774444443333 334788888889999999999999999999998 44665 78999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHh
Q 011236 430 ILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIR 469 (490)
Q Consensus 430 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~ 469 (490)
+...+...|.-++-.+++.+.....|. -..|.++-..-..
T Consensus 857 fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i~n 897 (913)
T KOG0495|consen 857 FYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDIKN 897 (913)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhHHh
Confidence 999999999999999999999888888 7777666554433
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=2.7e-14 Score=130.93 Aligned_cols=284 Identities=14% Similarity=0.069 Sum_probs=200.4
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC----ChhHHHHHHHHHHhcCChhHHHHH
Q 011236 84 RFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK----VDKLYGALLNCYVREGLVDESLSL 159 (490)
Q Consensus 84 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~ 159 (490)
+..+|+..|.++...- .-+......+..+|...+++++|..+|+.+.+..| +...|.+.+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 4677888888854443 44557777778888888888888888888887764 566777776554321 12222
Q ss_pred -HHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCC
Q 011236 160 -MQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPP-DNFSYRICINSYGARSELSSMENVLQEMESQS 237 (490)
Q Consensus 160 -~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 237 (490)
-+++.... +-.+.+|-++.++|.-+++.+.|++.|++.++. .| ..++|+.+.+-+.....+|.|...|+... .
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-~- 483 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-G- 483 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh-c-
Confidence 22233332 226778888888888888888888888888774 34 66778877777888888888888887776 3
Q ss_pred CCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCCh
Q 011236 238 HISMDWGTYS---TVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLN 314 (490)
Q Consensus 238 ~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 314 (490)
.+...|+ -+...|.+.++++.|+-.|++..+..+ .+.+....+...+-+.|+.++|++++++.....+ .++
T Consensus 484 ---~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP--~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~ 557 (638)
T KOG1126|consen 484 ---VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP--SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNP 557 (638)
T ss_pred ---CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc--cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCc
Confidence 3334444 466678888888888888888877666 5667777777777888888888888887776665 444
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011236 315 RDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTP 384 (490)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 384 (490)
..-...+..+...+++++|.+.++++++. ++-+..++..+...|.+.|+.+.|+.-|.-+.+.++++..
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 44445556666778888888888888775 4445566777778888888888888888777776655433
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=2.4e-12 Score=108.06 Aligned_cols=287 Identities=14% Similarity=0.119 Sum_probs=163.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCCh
Q 011236 150 EGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDN------FSYRICINSYGARSEL 223 (490)
Q Consensus 150 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~ 223 (490)
..+.++|.++|-+|.+.... +..+.-+|.+.|.+.|..+.|+++.+.+.++ ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 35667777777777765322 4444556666777777777777777776654 332 1233445556666777
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCCh----hhHHHHHHHHHhcCChhHHH
Q 011236 224 SSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDA----LGYNHLISHYASLGNKDEMM 299 (490)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~ 299 (490)
|.|+.+|..+. +.+. .-......|+..|-...+|++|+++-+++.+.+.. +.. ..|-.+...+....+.+.|.
T Consensus 124 DRAE~~f~~L~-de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 124 DRAEDIFNQLV-DEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ-TYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hHHHHHHHHHh-cchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-cchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 77777777666 3222 33445555677777777777777776666655543 221 22334444444556666666
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011236 300 KFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKG 379 (490)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 379 (490)
.++.+.....+ ..+..-..+.+.....|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++....+..+.+..
T Consensus 201 ~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 66666666554 44444455566666667777777777666666544444556666666666777766666666666543
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHc---CCCHHHHHHHHHHHHhc
Q 011236 380 KTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGD---NRDVEEVEAFVSSLKIK 453 (490)
Q Consensus 380 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 453 (490)
. ....-..+...-....-.+.|..++.+-+. -+|+...+..++..-.. .|...+....++.|...
T Consensus 280 ~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~-------r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 T--GADAELMLADLIELQEGIDAAQAYLTRQLR-------RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred C--CccHHHHHHHHHHHhhChHHHHHHHHHHHh-------hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 2 222233333333334444555555555444 34666666666665432 23344444455555443
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4.6e-14 Score=129.46 Aligned_cols=285 Identities=12% Similarity=0.014 Sum_probs=166.0
Q ss_pred hhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHHHH
Q 011236 153 VDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENG--VPPDNFSYRICINSYGARSELSSMENVL 230 (490)
Q Consensus 153 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~ 230 (490)
..+|+..|..+.+.- .-+......+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+-.+-+.- ++..+
T Consensus 335 ~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHHH
Confidence 456666666644442 2233455566666777777777777777665532 0124455655554432211 11111
Q ss_pred -HHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011236 231 -QEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKC 309 (490)
Q Consensus 231 -~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 309 (490)
+.+. +.+. -.+++|-++.++|.-.++.+.|++.|++..+..+ ...++|+.+..-+.....+|.|...|+..+...
T Consensus 410 aq~Li-~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp--~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 410 AQDLI-DTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP--RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHH-hhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC--ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 1122 2221 4456666677777777777777777777666444 356666666666666667777777776554432
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011236 310 KKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSI 389 (490)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 389 (490)
+ .+-..|.-+...|.+.++++.|+-.|+++.+-++. +.+....+...+.+.|+.|+|+.+++++...+++ |+..--.
T Consensus 486 ~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 P-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred c-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 2 22233444566666777777777777766664222 4444555556666667777777777777666555 5555555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 390 IAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 390 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
.+..+...+++++|++.+++.++ +.|+. ..|..+...|.+.|+.+.|..-|.-+.+.+|.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~-------~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE-------LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH-------hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 55566666677777777777665 44544 45556666677777777777777666666665
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=5.9e-12 Score=108.99 Aligned_cols=286 Identities=16% Similarity=0.127 Sum_probs=207.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 011236 150 EGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENV 229 (490)
Q Consensus 150 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 229 (490)
.|+|.+|+++..+-.+.+-. ....|..-..+.-..|+.+.+-.++.+..+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 67788888888777766544 23345555566667778888888887777653344555566666677777888888877
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCCh-------hhHHHHHHHHHhcCChhHHHHHH
Q 011236 230 LQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDA-------LGYNHLISHYASLGNKDEMMKFW 302 (490)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 302 (490)
++++. +.+. -..........+|.+.|++.....++.++.+.+.. .+. .+|..+++-....+..+.-...|
T Consensus 176 v~~ll-~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l-~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLL-EMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL-SDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHH-HhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC-ChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 77776 5554 45666777778888888888888888888776654 332 45777777776666666666666
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011236 303 GLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTP 382 (490)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 382 (490)
+..-.. .+.++..-.+++.-+.+.|+.++|.++..+..+.+..|+. ...-.+.+-++.+.-++..++-.+..+.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~- 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE- 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC-
Confidence 644333 3466677778888888899999999999888888776651 2223455667777777777777665443
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 383 TPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
++..+.+|...|.+.+.|.+|...|+.++. ..|+..+|..+..++.+.|+.+.|.++.++...
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~-------~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK-------LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh-------cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 567888889999999999999999998877 668889999999999999999999888887653
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2e-11 Score=110.16 Aligned_cols=414 Identities=10% Similarity=0.019 Sum_probs=283.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHc----cccC--C-C
Q 011236 64 GQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSL----NDED--K-V 136 (490)
Q Consensus 64 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~--p-~ 136 (490)
++..|+...--+...+.-.|++..|..+...-.-.+ .+.........++.+..++++|..++... .... + +
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~--~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~ 121 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEK--RDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKD 121 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchh
Confidence 444566666667777777777777777766553333 36667777777888888888888887722 1100 0 1
Q ss_pred h-------hHH-----HHH-------HHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC-----------
Q 011236 137 D-------KLY-----GAL-------LNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTG----------- 186 (490)
Q Consensus 137 ~-------~~~-----~~l-------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------- 186 (490)
. ..+ +.- ...|....+.++|...|.+.....+. .-..+..++....-.-
T Consensus 122 ~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~ 200 (611)
T KOG1173|consen 122 AANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLTAQEEFELLESLD 200 (611)
T ss_pred hhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcchhHHHHHHhccc
Confidence 0 001 000 12344556677777777777665322 2222222222221111
Q ss_pred -------CcCcHHHHHHHH----HH------------CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCH
Q 011236 187 -------QHEKIPDVLLDM----KE------------NGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDW 243 (490)
Q Consensus 187 -------~~~~a~~~~~~m----~~------------~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 243 (490)
+.+....+|+-- .. .+..-+.........-|...+++.+..++++... +..+ +..
T Consensus 201 ~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~ll-e~dp-fh~ 278 (611)
T KOG1173|consen 201 LAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELL-EKDP-FHL 278 (611)
T ss_pred HHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHH-hhCC-CCc
Confidence 001111111100 00 0122334444455566677889999999999988 5544 555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 011236 244 GTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGS 323 (490)
Q Consensus 244 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (490)
..+..-|.++...|+..+-..+=.++.+..| ....+|-++...|...|+..+|.++|.+.....+ .-...|..+..+
T Consensus 279 ~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP--~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghs 355 (611)
T KOG1173|consen 279 PCLPLHIACLYELGKSNKLFLLSHKLVDLYP--SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHS 355 (611)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHHhCC--CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHH
Confidence 6666677799999998888877788887676 5778999999999999999999999997766554 555789999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 011236 324 LVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKA 403 (490)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 403 (490)
|+-.|.-++|...+...-+. ++-...-+--+..-|.+.+.++.|.+.|.+.....+. |+..++-+.-.....+.+.+|
T Consensus 356 fa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 356 FAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred hhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHH
Confidence 99999999999998887664 1111111223445588899999999999998887544 888888888888889999999
Q ss_pred HHHHHHHHHhhhcCcCCC-cchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHH
Q 011236 404 FECMKEALAVHEENKFWR-PKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLE 479 (490)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~ 479 (490)
..+|+..+..-.....-. -...+++.|..+|.+.+.+++|...+++.....|. ..++.+++-.|...| +.|++.|.
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 999999985222111111 24567889999999999999999999999999999 999999999999999 99999998
Q ss_pred HHHhCCCCCC
Q 011236 480 SMKADDIDED 489 (490)
Q Consensus 480 ~m~~~~~~pd 489 (490)
+-.. +.||
T Consensus 514 KaL~--l~p~ 521 (611)
T KOG1173|consen 514 KALA--LKPD 521 (611)
T ss_pred HHHh--cCCc
Confidence 7664 4454
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=3.1e-12 Score=107.40 Aligned_cols=285 Identities=14% Similarity=0.093 Sum_probs=170.5
Q ss_pred hcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc------hHHHHHHHHHhcCCcC
Q 011236 117 VRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSAL------NYNGIMCLYTNTGQHE 189 (490)
Q Consensus 117 ~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~~~l~~~~~~~~~~~ 189 (490)
..+.+.|..+|-+|.+.+| +..+--+|.+.|-+.|.++.|+++-+.+.++ ||.. ..-.|..-|...|-++
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4566777777777776655 4555566667777777777777777776665 3321 2234555566677777
Q ss_pred cHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 011236 190 KIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMD----WGTYSTVANYYIIAGLKEKAIIY 265 (490)
Q Consensus 190 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~ 265 (490)
.|+.+|..+.+.|. .-......|+..|-...+|++|+++-+++. +.+..+. ...|--+...+....+++.|...
T Consensus 125 RAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~-k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 125 RAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLV-KLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 77777777766432 234456666777777777777777766665 3333222 22334444455556667777777
Q ss_pred HHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 011236 266 LKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCY 345 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 345 (490)
+.+..+..+ ..+..-..+.+.+...|+++.|.+.|+...+.++..-..+...|..+|.+.|+.++....+..+.+...
T Consensus 203 l~kAlqa~~--~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 203 LKKALQADK--KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHhhCc--cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 777666554 355555566666677777777777777666666555555666777777777777777777776666422
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHH
Q 011236 346 CYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD---KNNMEKAFECMKEALA 412 (490)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 412 (490)
....-..+...-....-.+.|...+.+-+.. +|+...+..++..-.. .|...+.+.+++.|+.
T Consensus 281 --g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 --GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred --CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3333333334333344455555555444443 4666666666665432 2345555666666665
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=9.2e-12 Score=107.79 Aligned_cols=291 Identities=14% Similarity=0.092 Sum_probs=137.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHcccc--CCChhHHHHHHHHHHhcCChhHHHHH
Q 011236 82 RKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDE--DKVDKLYGALLNCYVREGLVDESLSL 159 (490)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~ 159 (490)
.|+|.+|.++..+-.+.+ +-..-.|....++.-..|+.+.+-.++.+..+. +++..++-+........|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 366666666666555554 222333334445555556666666666665555 23444555555555666666666666
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC
Q 011236 160 MQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHI 239 (490)
Q Consensus 160 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 239 (490)
++++.+.+.. ++.......++|.+.|++..+..++..+.+.|.-.|...-..
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 6665555443 455555556666666666666666666655554333211000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHH
Q 011236 240 SMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYIT 319 (490)
Q Consensus 240 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 319 (490)
...+|+.+++-....+..+.-...++.....-. .++..-.+++.-+.+.|+.++|.++..+..+....|. -.
T Consensus 228 --e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr--~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~ 299 (400)
T COG3071 228 --EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLR--NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LC 299 (400)
T ss_pred --HHHHHHHHHHHHhccccchHHHHHHHhccHHhh--cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HH
Confidence 012233333333333333332233333222211 2333334444444455555555555444444433222 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 011236 320 MLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNN 399 (490)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 399 (490)
..-.+.+.++.+.-.+..++..+. .+-++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGE 376 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCC
Confidence 111233344444444444443332 2223344455555555555555555555544443 3455555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 011236 400 MEKAFECMKEALA 412 (490)
Q Consensus 400 ~~~a~~~~~~~~~ 412 (490)
..+|.+..++.+.
T Consensus 377 ~~~A~~~r~e~L~ 389 (400)
T COG3071 377 PEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555543
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=2.9e-10 Score=100.60 Aligned_cols=353 Identities=12% Similarity=0.083 Sum_probs=182.3
Q ss_pred hhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHH
Q 011236 116 KVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVL 195 (490)
Q Consensus 116 ~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 195 (490)
..|++..|.++|+.-..-.|+..+|.+.|+.=.+.+.++.|..++++..-. .|++.+|--....=.+.|+...+..+|
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 345555555555555555555555555555555555555555555554432 245555555555555555555555555
Q ss_pred HHHHHC-CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHHcCC---HHHHHH----
Q 011236 196 LDMKEN-GV-PPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMD--WGTYSTVANYYIIAGL---KEKAII---- 264 (490)
Q Consensus 196 ~~m~~~-~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~---~~~a~~---- 264 (490)
....+. |- .-+...+.+....-.++..++.|.-+|+-.. +. ++.+ ...|.....-=-+-|+ +++++-
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl-d~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYAL-DH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 554432 00 0011122222222223344444444444443 11 1111 1222222222122233 222221
Q ss_pred -HHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCCh------hhHHHHHHHH---HhcCCHHHHH
Q 011236 265 -YLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLN------RDYITMLGSL---VKIGELEEAE 334 (490)
Q Consensus 265 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~---~~~~~~~~a~ 334 (490)
-|+.+...++ .|-.+|--.+..-...|+.+...++|++.+...++... ..|.-+=.+| ....+.+.+.
T Consensus 309 ~qYE~~v~~np--~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSKNP--YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hHHHHHHHhCC--CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 1222233233 35556666666666677777777777776665542111 1111111111 2356777777
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011236 335 KMLEEWELSCYCYDFRVPNIILLGY----SQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEA 410 (490)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 410 (490)
++++..++. ++....||..+--.| .++.++..|.+++...+. .-|-..+|...|..-.+.++++....++++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777664 444555555444443 345666777777666554 3455666666666666777777777777777
Q ss_pred HHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc---hhhhHHHHHHHHhcC--CcHHHHHHHHHhC
Q 011236 411 LAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK---RNMYHALTEAHIRSG--QEVDGLLESMKAD 484 (490)
Q Consensus 411 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~l~~~~~~~g--~~a~~~~~~m~~~ 484 (490)
++ ..|.. .+|......-...|+++.|..+|+-+.+.... ...|-+.|+.=...| +.|..+++++.+.
T Consensus 464 le-------~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 464 LE-------FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred Hh-------cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 66 33443 56666666666667777777777766665432 455666666666666 6777777766653
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.4e-10 Score=102.30 Aligned_cols=321 Identities=13% Similarity=0.072 Sum_probs=229.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchH--HHHHHHHHhcCC
Q 011236 110 QLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNY--NGIMCLYTNTGQ 187 (490)
Q Consensus 110 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~ 187 (490)
....+.+.|....|+..|......-| ..|.+.+....-.-+.+.+. ..... ...|..-. -.+..++.....
T Consensus 170 ~Gvv~k~~~~~s~A~~sfv~~v~~~P--~~W~AWleL~~lit~~e~~~----~l~~~-l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 170 YGVVLKELGLLSLAIDSFVEVVNRYP--WFWSAWLELSELITDIEILS----ILVVG-LPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred HHHHHHhhchHHHHHHHHHHHHhcCC--cchHHHHHHHHhhchHHHHH----HHHhc-CcccchHHHHHHHHHHHHHHHH
Confidence 33445567777788888777766544 22333333222222222222 22111 11121111 123344555567
Q ss_pred cCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011236 188 HEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHI--SMDWGTYSTVANYYIIAGLKEKAIIY 265 (490)
Q Consensus 188 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~ 265 (490)
.+++.+-.......|++-+...-+....+.-...|+++|+.+|+++. +.++ --|..+|+.++-. +..+- .+.+
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~-knDPYRl~dmdlySN~LYv--~~~~s--kLs~ 317 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIR-KNDPYRLDDMDLYSNVLYV--KNDKS--KLSY 317 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH-hcCCCcchhHHHHhHHHHH--HhhhH--HHHH
Confidence 77888888888888886666555555666667889999999999998 4432 1356777766533 32221 1222
Q ss_pred HHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 011236 266 LKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCY 345 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 345 (490)
+-+-...... --+.|+..+.+-|.-.++.++|..+|++....++ .....|+.+..-|....+...|.+-++..++- .
T Consensus 318 LA~~v~~idK-yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~ 394 (559)
T KOG1155|consen 318 LAQNVSNIDK-YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-N 394 (559)
T ss_pred HHHHHHHhcc-CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-C
Confidence 2221111222 5667888899999999999999999998888776 66778999999999999999999999999987 4
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchh
Q 011236 346 CYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPS 425 (490)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~ 425 (490)
+.|-..|-.|.++|.-.+...-|+-.|++..+..+. |...|.+|..+|.+.++.++|+..|+.+.. .-..+..
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~------~~dte~~ 467 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAIL------LGDTEGS 467 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHh------ccccchH
Confidence 458889999999999999999999999999997655 889999999999999999999999999988 2234668
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 426 LVSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 426 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
.+..|...+.+.++.++|.+.+++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999999999998887666
No 52
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=6.3e-10 Score=98.51 Aligned_cols=404 Identities=10% Similarity=0.025 Sum_probs=308.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCC-hhHHHHHH
Q 011236 66 KISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKV-DKLYGALL 144 (490)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~li 144 (490)
..+...|..-...=..++++..|..+|+..+... ..+...+...+.+-.+...+..|..+++.....-|- ...|-..+
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3455555555555567788899999999999877 456677777888888999999999999998877663 45677777
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 011236 145 NCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELS 224 (490)
Q Consensus 145 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 224 (490)
.+=-..|++..|.++|++-.+. .|+...|++.|+.=.+-+.++.|..+|+..+- +.|++.+|-.....--+.|+..
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHH
Confidence 7777789999999999998775 79999999999999999999999999999976 5699999999999989999999
Q ss_pred HHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHH--
Q 011236 225 SMENVLQEMESQSHIS-MDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKF-- 301 (490)
Q Consensus 225 ~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-- 301 (490)
.|..+|+......|-. .+...+.+...-=..+..++.|.-+|+-..+..+.......|..+...--+-|+.....+.
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 9999999887333321 2233344444444567789999999999888776422345565555555555665444433
Q ss_pred ------HHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch--hHHHHHHH--------HHhcCCH
Q 011236 302 ------WGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFR--VPNIILLG--------YSQKGMI 365 (490)
Q Consensus 302 ------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~--------~~~~g~~ 365 (490)
|+.....++ .|-.+|-..++.-...|+.+...++++..... ++|-.. .|.-.|-. =....++
T Consensus 305 ~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344445444 66678888888888899999999999999886 555321 12222211 1346889
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHH----HHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHH
Q 011236 366 EKADAVLKEIVKKGKTPTPNSWSII----AAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVE 441 (490)
Q Consensus 366 ~~A~~~~~~m~~~~~~p~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 441 (490)
+.+.++++..++. ++-...||.-+ ...-.++.+...|.+++..++ |..|-..+|...|..-.+.+.++
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-------G~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-------GKCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh-------ccCCchhHHHHHHHHHHHHhhHH
Confidence 9999999999984 22244454433 344457889999999999986 46799999999999999999999
Q ss_pred HHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHHHhC
Q 011236 442 EVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESMKAD 484 (490)
Q Consensus 442 ~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m~~~ 484 (490)
.+.+++++..+-+|. ..+|.-....=...| +.|..+|+-....
T Consensus 455 RcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 455 RCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 999999999999999 888988888888888 8888888766543
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.51 E-value=2.1e-11 Score=105.99 Aligned_cols=203 Identities=16% Similarity=0.059 Sum_probs=145.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHH
Q 011236 241 MDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITM 320 (490)
Q Consensus 241 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (490)
.....+..+...+...|++++|...+++.....+ .+...+..+...+...|++++|.+.+++.....+ .+...+..+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~ 105 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP--DDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNY 105 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHH
Confidence 3355666677778888888888888887766544 4566777777778888888888888887776654 455666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 011236 321 LGSLVKIGELEEAEKMLEEWELSCYC-YDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNN 399 (490)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 399 (490)
...+...|++++|.+.+++....... .....+..+...+...|++++|...+++..+..+. +...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCC
Confidence 77777888888888888887764222 22345666777788888888888888888776443 55677778888888888
Q ss_pred HHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 011236 400 MEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIK 453 (490)
Q Consensus 400 ~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 453 (490)
+++|...++++.. . ...+...+..+...+...|+.+.|..+.+.+...
T Consensus 185 ~~~A~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 185 YKDARAYLERYQQ-----T-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHH-----h-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8888888888877 2 2234456666677777788888888887776654
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=8.9e-11 Score=104.18 Aligned_cols=385 Identities=11% Similarity=0.016 Sum_probs=255.7
Q ss_pred HHhhccCCCCCCChHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhc
Q 011236 40 YSRISPLGDPDVSLTPVLDQWVLEGQKIS-ELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVR 118 (490)
Q Consensus 40 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 118 (490)
-+.+.+.+++++++. .+..-+ ...|+ +.-|.....+|...|+|++..+-.-+.++.+ +.-...+..-..++-..|
T Consensus 122 GN~~f~~kkY~eAIk-yY~~AI--~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIK-YYTQAI--ELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhcccHHHHHH-HHHHHH--hcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhhc
Confidence 345666778888887 555544 34567 7788999999999999999999888888876 223344444556666778
Q ss_pred CHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHH---------HHhcC--CCCCcchHH-----------
Q 011236 119 GLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQK---------MKEMG--SFGSALNYN----------- 176 (490)
Q Consensus 119 ~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~---------m~~~~--~~p~~~~~~----------- 176 (490)
++++|+.=..- .++..++....-.--+.+++++ +.+.+ +-|+....+
T Consensus 198 ~~~eal~D~tv-----------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 198 KFDEALFDVTV-----------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred cHHHHHHhhhH-----------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 88777642221 1111111111111111122111 11111 112222111
Q ss_pred ------------HHHHHHH--hcC---CcCcHHHHHHHHHHCC-CCCC-----------HHHHHHHHHHHhccCChHHHH
Q 011236 177 ------------GIMCLYT--NTG---QHEKIPDVLLDMKENG-VPPD-----------NFSYRICINSYGARSELSSME 227 (490)
Q Consensus 177 ------------~l~~~~~--~~~---~~~~a~~~~~~m~~~~-~~p~-----------~~~~~~li~~~~~~g~~~~a~ 227 (490)
.+..++. ..+ .+.++...+.+-.... ..++ ..+.......+.-.|+...|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 1111111 011 1222222222211100 1111 112222223345578999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011236 228 NVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKI 307 (490)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (490)
.-|+..+ .....+ ...|--+..+|....+.++.+..|....+..+ .|+.+|..-.+.+.-.+++++|..=|++.+.
T Consensus 347 ~d~~~~I-~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp--~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 347 EDFDAAI-KLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDP--ENPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred hhHHHHH-hcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCC--CCCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998 655533 33377788899999999999999999998777 5777888888888889999999999998887
Q ss_pred hcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----C
Q 011236 308 KCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKT-----P 382 (490)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-----p 382 (490)
..+ -+...|..+..+.-+.+.++++...|++.++. ++..+..|+.....+...++++.|.+.|+..++.... .
T Consensus 423 L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v 500 (606)
T KOG0547|consen 423 LDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV 500 (606)
T ss_pred cCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc
Confidence 765 67778888888888999999999999999887 7778899999999999999999999999999875322 1
Q ss_pred C--HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 011236 383 T--PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIK 453 (490)
Q Consensus 383 ~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 453 (490)
+ +.+.-.++..-. .+++..|..++.++++ +.|.. ..|..|...-...|+.++|.++|++....
T Consensus 501 ~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e-------~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQW-KEDINQAENLLRKAIE-------LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred cchhhhhhhHhhhch-hhhHHHHHHHHHHHHc-------cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1 122223332222 3899999999999998 44555 67889999999999999999999976543
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=3.2e-11 Score=117.46 Aligned_cols=265 Identities=14% Similarity=-0.013 Sum_probs=177.4
Q ss_pred CHHHHHHHHHHHh-----ccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHhh
Q 011236 206 DNFSYRICINSYG-----ARSELSSMENVLQEMESQSHISMDWGTYSTVANYYII---------AGLKEKAIIYLKKCED 271 (490)
Q Consensus 206 ~~~~~~~li~~~~-----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~ 271 (490)
+...|...+.+-. ..+++++|...|++.. +.++ -+...|..+..++.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al-~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCV-NMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHH-hcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 3444555555431 1234678888998887 5554 345566666655542 2347889999998888
Q ss_pred hhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh
Q 011236 272 IVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRV 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 351 (490)
..+ .+..++..+...+...|++++|...|++.....+ .+...+..+..++...|++++|...+++..+.... +...
T Consensus 333 ldP--~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 333 LDH--NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred cCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 766 5778888888888889999999999998888765 55667888888889999999999999998886332 2223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchh-hHHHH
Q 011236 352 PNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPS-LVSSI 430 (490)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~l 430 (490)
+..++..+...|++++|...++++.+...+-++..+..+..++...|+.++|...++++.. ..|+.. ....+
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~-------~~~~~~~~~~~l 481 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST-------QEITGLIAVNLL 481 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh-------ccchhHHHHHHH
Confidence 3344555666888999999998887664322455677788888889999999999888765 234443 34455
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC-CcHHHHHHHHHhCC
Q 011236 431 LDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG-QEVDGLLESMKADD 485 (490)
Q Consensus 431 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g-~~a~~~~~~m~~~~ 485 (490)
...+...| +.|...++.+.+.... ...+..+-..|.-.| .+...+++++.+.|
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 536 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMWNKFKNED 536 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHHHHhhccc
Confidence 55666666 4777777776654433 211222333444445 33444447776654
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=5.2e-12 Score=106.17 Aligned_cols=232 Identities=13% Similarity=0.087 Sum_probs=185.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHH
Q 011236 241 MDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITM 320 (490)
Q Consensus 241 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (490)
.|+.--+.+..+|.+.|.+.+|.+.|+.-.... |-+.||..|-++|.+..++..|+.++.+-....+ .++....-+
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~---~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ 296 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF---PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQ 296 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC---CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhh
Confidence 455666778889999999999998888766544 5566788888889999999999999887766543 444444567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 011236 321 LGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNM 400 (490)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 400 (490)
.+.+...++.++|.++++...+. .+.++....++..+|.-.++++-|+..++++.+.|+. ++..|+.+.-+|.-.+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 77788888899999999988876 4556777777778888888999999999999998887 888888888888888999
Q ss_pred HHHHHHHHHHHHhhhcCcCCCcch--hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHH
Q 011236 401 EKAFECMKEALAVHEENKFWRPKP--SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVD 475 (490)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~ 475 (490)
+-++..|++++. .--.|+. .+|..+.......||+..|.+.|+-....++. ...++.|.-.-.+.| +.|.
T Consensus 375 D~~L~sf~RAls-----tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 375 DLVLPSFQRALS-----TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred hhhHHHHHHHHh-----hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHH
Confidence 999998888887 3333444 57888888888889999999999988888888 888888888888888 8888
Q ss_pred HHHHHHHh
Q 011236 476 GLLESMKA 483 (490)
Q Consensus 476 ~~~~~m~~ 483 (490)
.+++....
T Consensus 450 sll~~A~s 457 (478)
T KOG1129|consen 450 SLLNAAKS 457 (478)
T ss_pred HHHHHhhh
Confidence 88876654
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=1.8e-11 Score=119.17 Aligned_cols=217 Identities=13% Similarity=0.063 Sum_probs=109.3
Q ss_pred ChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHh---------cCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 011236 152 LVDESLSLMQKMKEMGSFGSALNYNGIMCLYTN---------TGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSE 222 (490)
Q Consensus 152 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 222 (490)
+.++|..+|++..+..+. +...|..+..++.. .+++++|...+++..+.+. -+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC
Confidence 355556666555554322 23334333333221 1234556666666655432 244455555555566666
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHH
Q 011236 223 LSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFW 302 (490)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 302 (490)
+++|...|++.. +.++ .+...+..+..++...|++++|+..+++..+..+. +...+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al-~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~--~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQAN-LLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT--RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 666666666665 4433 33445555666666666666666666666554442 2222223333344456666666666
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011236 303 GLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVK 377 (490)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 377 (490)
++.....+..+...+..+..++...|+.++|...+.++... .+.+....+.+...|+..| ++|...++.+.+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 65554433123334455555556666666666666665443 1112223344444455555 355555555443
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.48 E-value=3.1e-11 Score=114.39 Aligned_cols=275 Identities=12% Similarity=0.077 Sum_probs=174.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccC
Q 011236 55 PVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED 134 (490)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 134 (490)
.++-.+...|+.|+..+|..+|..||..|+.+.|- +|..|.-...+.+...++.++......++.+.+. .
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------C
Confidence 36677778899999999999999999999998887 8888888877888888888888877878777665 3
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHH-HCCCCCCHHHHHHH
Q 011236 135 KVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMK-ENGVPPDNFSYRIC 213 (490)
Q Consensus 135 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~l 213 (490)
|.+.+|+.|..+|.+.|+..- ++..++ -.-.+...+...|.......++..+. ..+.-||..+ +
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~ 145 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---A 145 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---H
Confidence 667788888888888888765 222222 11223344555565555555554432 1223344433 3
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcC
Q 011236 214 INSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLG 293 (490)
Q Consensus 214 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 293 (490)
+......|-++.+++++..+.......|... +++-+... .....++.......... +++.+|..++.+-...|
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~-~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEA-PTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcC-CChHHHHHHHHHHHhcC
Confidence 3444455677777777766641111112111 12222221 22223333332222222 67777777777777777
Q ss_pred ChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCC
Q 011236 294 NKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGM 364 (490)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (490)
+.+.|..++.+|...+...+..-|-.|+-+ .++...++.+++-|...|+.|+..|+...+..+..+|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777777777777777775555555555544 66777777777777777777777777766666666554
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.48 E-value=4.9e-09 Score=96.43 Aligned_cols=301 Identities=13% Similarity=0.085 Sum_probs=159.8
Q ss_pred CCcccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC------CCChhhH
Q 011236 34 VARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGL------AFSVHDH 107 (490)
Q Consensus 34 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~ 107 (490)
.-|...+.-+...+-|+-++. ++++.. +.++..-+.-|..+++.+++++|.+.+...+.... +-+...+
T Consensus 139 rIW~lyl~Fv~~~~lPets~r-vyrRYL----k~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw 213 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIR-VYRRYL----KVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLW 213 (835)
T ss_pred cchHHHHHHHHhCCChHHHHH-HHHHHH----hcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHH
Confidence 347777777777777766666 777774 34566678888889999999999999988775432 3344455
Q ss_pred HHHHHHHHhhcCHH---HHHHHHHHccccCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 011236 108 AVQLDLIGKVRGLE---SAETYFNSLNDEDKV--DKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLY 182 (490)
Q Consensus 108 ~~l~~~~~~~~~~~---~A~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 182 (490)
..+.....+.-+.- ....+++.+...-+| ...|.+|.+-|.+.|.+++|.++|++....- .++.-|..+.++|
T Consensus 214 ~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Y 291 (835)
T KOG2047|consen 214 LELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAY 291 (835)
T ss_pred HHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHH
Confidence 55555555443322 344455555555555 4568899999999999999999998876641 1333444444443
Q ss_pred Hhc----------------CC------cCcHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHhccCChHHHHHH
Q 011236 183 TNT----------------GQ------HEKIPDVLLDMKENGV-----------PPDNFSYRICINSYGARSELSSMENV 229 (490)
Q Consensus 183 ~~~----------------~~------~~~a~~~~~~m~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~ 229 (490)
+.- ++ ++-.+.-|+.+..... +.++.+|..-+.. ..|+..+-...
T Consensus 292 a~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~t 369 (835)
T KOG2047|consen 292 AQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINT 369 (835)
T ss_pred HHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHH
Confidence 321 11 1112223333332210 1122222222222 23445555555
Q ss_pred HHHHHhCCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCC--hhhHHHHHHHHHhcCChhHHHHHHH
Q 011236 230 LQEMESQSHIS----MDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKD--ALGYNHLISHYASLGNKDEMMKFWG 303 (490)
Q Consensus 230 ~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~ 303 (490)
|.+....-++. .-...|..+.+.|-..|+++.|..+|++......+..+ ..+|..-..+-.+..+++.|+++.+
T Consensus 370 yteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 370 YTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred HHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 55554211111 01233445566666666666666666665543331000 1344444455555556666666555
Q ss_pred HHHHhcCCC-----------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011236 304 LQKIKCKKQ-----------------LNRDYITMLGSLVKIGELEEAEKMLEEWELS 343 (490)
Q Consensus 304 ~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 343 (490)
........| +...|...++.--..|-++....+++.+.+.
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 332211110 1123444445445555666666666665554
No 60
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2.8e-09 Score=97.10 Aligned_cols=426 Identities=13% Similarity=0.064 Sum_probs=238.8
Q ss_pred ccHHHhhccCC---CCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011236 37 NNLYSRISPLG---DPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDL 113 (490)
Q Consensus 37 ~~l~~~l~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 113 (490)
..++..+.+.+ ++++++. ....+... .+-+...+..=+-++.+.++|++|+.+.+.-.... ....-+..-.-+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k-~~~Kil~~-~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVK-TANKILSI-VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHH-HHHHHHhc-CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHH
Confidence 35555554443 4444555 44444433 34555666666667778888888885554422111 011111122233
Q ss_pred HHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-CCcCcHH
Q 011236 114 IGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNT-GQHEKIP 192 (490)
Q Consensus 114 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~ 192 (490)
..+.+..++|+..++..... +..+...-.+.+.+.|++++|+.+|+.+.+.+ ...+...+++-+.. +....+.
T Consensus 89 ~Yrlnk~Dealk~~~~~~~~--~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~----~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDRL--DDKLLELRAQVLYRLERYDEALDIYQHLAKNN----SDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHcccHHHHHHHHhccccc--chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHhhhHH
Confidence 34778888888888733322 23344445567778888888888888887763 33333333221111 1111111
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH---HHhccCChHHHHHHHHHHH----h---CCCC-----CCCHHH-HHHHHHHHHHc
Q 011236 193 DVLLDMKENGVPPDNFSYRICIN---SYGARSELSSMENVLQEME----S---QSHI-----SMDWGT-YSTVANYYIIA 256 (490)
Q Consensus 193 ~~~~~m~~~~~~p~~~~~~~li~---~~~~~g~~~~a~~~~~~~~----~---~~~~-----~~~~~~-~~~li~~~~~~ 256 (490)
.+......| ..+|..+.+ .+...|++.+|+++++... + +.+. .....+ -..+...+-..
T Consensus 163 ----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 163 ----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred ----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 122222233 234444433 4556889999999988872 0 1111 111111 12355567788
Q ss_pred CCHHHHHHHHHHHhhhhccCCChhh----HHHHHHHHHhcCChh----------------HHHH----------------
Q 011236 257 GLKEKAIIYLKKCEDIVSKSKDALG----YNHLISHYASLGNKD----------------EMMK---------------- 300 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~----------------~a~~---------------- 300 (490)
|+.++|..+|.......+ +|... -|.++..-....-++ .++.
T Consensus 238 Gqt~ea~~iy~~~i~~~~--~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNP--ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred cchHHHHHHHHHHHHhcC--CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988887665 34321 122221111100000 0000
Q ss_pred --HH-------HHHHHhcC-CCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHH
Q 011236 301 --FW-------GLQKIKCK-KQLNRDYITMLGSLVK--IGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKA 368 (490)
Q Consensus 301 --~~-------~~~~~~~~-~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 368 (490)
+| ++.....+ ......+.+++..+.+ ......+.+++....+....-...+.-..+......|+++.|
T Consensus 316 L~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 316 LALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 00 00001111 1122344455554433 224666777777766542222234455566777889999999
Q ss_pred HHHHH--------HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCC
Q 011236 369 DAVLK--------EIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRD 439 (490)
Q Consensus 369 ~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 439 (490)
.+++. .+.+.+-.|- +-..+...+.+.++.+.|.+++.+++..+.....-.+.. .++..+...-.+.|+
T Consensus 396 ~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 99999 5555554444 445566777888888889999998888663222222222 233344444457799
Q ss_pred HHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC-CcHHHHHHHH
Q 011236 440 VEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG-QEVDGLLESM 481 (490)
Q Consensus 440 ~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g-~~a~~~~~~m 481 (490)
-++|..+++++.+..|+ ..+...++.+|++.. +.|..+-+.+
T Consensus 474 ~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~k~L 517 (652)
T KOG2376|consen 474 EEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLSKKL 517 (652)
T ss_pred hHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHhhcC
Confidence 99999999999998888 999999999999999 8888876554
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.6e-10 Score=103.16 Aligned_cols=283 Identities=13% Similarity=0.028 Sum_probs=223.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011236 138 KLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSY 217 (490)
Q Consensus 138 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 217 (490)
........-+...+++.+..++++...+.. +++...+..-|.++...|+..+-..+=.++.+. .+-...+|-++.--|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHH
Confidence 334445566777899999999999998874 346777777777888999999888888888875 444667899999888
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhH
Q 011236 218 GARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDE 297 (490)
Q Consensus 218 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (490)
...|+..+|.+.|.+.. ..+. .-...|-.+...|.-.|.-|+|+..+...-+..+. ....+--+..-|.+.++.+.
T Consensus 323 l~i~k~seARry~SKat-~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G--~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKAT-TLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG--CHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHhcCcHHHHHHHHHHh-hcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC--CcchHHHHHHHHHHhccHHH
Confidence 88999999999999886 4443 22345666888999999999999998887765442 33334445566888999999
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC----CCchhHHHHHHHHHhcCCHHHHHHH
Q 011236 298 MMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSC--YC----YDFRVPNIILLGYSQKGMIEKADAV 371 (490)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (490)
|.++|.......+ .|+...+-+.-.....+.+.+|..+|+..+..- .. .-..+++.|.++|.+.+++++|+..
T Consensus 399 Ae~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 9999998887766 777788888877788899999999998876321 11 1234578899999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHH
Q 011236 372 LKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLG 435 (490)
Q Consensus 372 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 435 (490)
+++.+...++ |..++.++.-.|...|+++.|.+.|.+++. +.|+..+-..++..+.
T Consensus 478 ~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~-------l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 478 YQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA-------LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh-------cCCccHHHHHHHHHHH
Confidence 9999988766 899999999999999999999999999987 7788877777766443
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=9.7e-12 Score=104.55 Aligned_cols=233 Identities=10% Similarity=0.021 Sum_probs=198.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHH
Q 011236 210 YRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHY 289 (490)
Q Consensus 210 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (490)
-+.+.++|.+.|.+.+|++.|+... +.. |-+.||-.|-..|.+..+.+.|+.++.+-.+..+ .|+.....+.+.+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL-~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP--~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSL-TQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP--FDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHh-hcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC--chhhhhhhhHHHH
Confidence 3678899999999999999999887 332 5556777799999999999999999999877665 4555556677888
Q ss_pred HhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHH
Q 011236 290 ASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKAD 369 (490)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 369 (490)
-..++.++|.++|+...+..+ .++....++...|.-.++.+-|..+++.+.+.|+. +...|+.+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 889999999999998887766 78888888888999999999999999999999876 7788999999999999999999
Q ss_pred HHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc-hhhHHHHHHHHHcCCCHHHHHHH
Q 011236 370 AVLKEIVKKGKTPTP--NSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK-PSLVSSILDWLGDNRDVEEVEAF 446 (490)
Q Consensus 370 ~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 446 (490)
.-|++....--.|+. ..|-.+.......|++..|.+.|+-++. -.|+ ...++.|.-.-.+.|+.++|..+
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~-------~d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT-------SDAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc-------cCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 999998876444544 5798999999999999999999999987 2244 47899888888899999999999
Q ss_pred HHHHHhcccc
Q 011236 447 VSSLKIKVQK 456 (490)
Q Consensus 447 ~~~~~~~~~~ 456 (490)
+....+..|.
T Consensus 452 l~~A~s~~P~ 461 (478)
T KOG1129|consen 452 LNAAKSVMPD 461 (478)
T ss_pred HHHhhhhCcc
Confidence 9999998887
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=9e-11 Score=101.92 Aligned_cols=201 Identities=15% Similarity=0.032 Sum_probs=144.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHH
Q 011236 206 DNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHL 285 (490)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 285 (490)
....+..+...+...|++++|...+++.. +... .+...+..+...+...|++++|.+.+++.....+ .+...+..+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l-~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~ 105 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKAL-EHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNP--NNGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHH
Confidence 34556667777777888888888887776 4332 4456667777778888888888888887776554 455667777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCC
Q 011236 286 ISHYASLGNKDEMMKFWGLQKIKCKK-QLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGM 364 (490)
Q Consensus 286 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (490)
...+...|++++|.+.++........ .....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC
Confidence 77788888888888888877654321 233456667777788888888888888877752 2345567777788888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 365 IEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 365 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
+++|...+++..+.. +.+...+..+...+...|+.++|..+++.+..
T Consensus 185 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 185 YKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 888888888887763 33566667777777888888888888777654
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.45 E-value=1.3e-09 Score=102.72 Aligned_cols=128 Identities=20% Similarity=0.265 Sum_probs=73.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhc
Q 011236 283 NHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQK 362 (490)
Q Consensus 283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 362 (490)
..+.+.|-..|++++|++++++.+...+ ..+..|..-.+.+-+.|++.+|.+.++....... -|..+-+..+..+.++
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHC
Confidence 4445556666666666666666665543 3345566666666666666666666666665422 2444445555556666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH------HH--HHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 363 GMIEKADAVLKEIVKKGKTPTPN------SW--SIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 363 g~~~~A~~~~~~m~~~~~~p~~~------~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
|++++|.+++......+..|-.. .| .....+|.+.|++..|+..|....+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666666666665544322211 11 2334556666776666666655554
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=6.6e-09 Score=90.65 Aligned_cols=365 Identities=9% Similarity=0.007 Sum_probs=242.2
Q ss_pred hhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhc-CCh-hH-------------HHHHHHHHHhcC-
Q 011236 104 VHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVRE-GLV-DE-------------SLSLMQKMKEMG- 167 (490)
Q Consensus 104 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~-~~-------------a~~~~~~m~~~~- 167 (490)
.+.....+.+|...++-+.|...+...+.....+ --|.++..+-+. ++- ++ |+..+.-..+.+
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p-~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSP-RINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccch-hHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 3444556777777888888888877776543222 122222222222 221 11 112222222222
Q ss_pred --------------CCCCcchHHHHHHHHHh--cCCcCcHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 011236 168 --------------SFGSALNYNGIMCLYTN--TGQHEKIPDVLLDMKEN-GVPPDNFSYRICINSYGARSELSSMENVL 230 (490)
Q Consensus 168 --------------~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 230 (490)
+.|+..+....+.+++. .++...+...+-.+... -++-|+.....+.+++...|+.++|+..|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 23333444444554443 34444444444333322 25667788899999999999999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC
Q 011236 231 QEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCK 310 (490)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 310 (490)
++.. -.++ -+........-.+...|+.+....+...+..... .....|-.-........++..|+.+-++.+...+
T Consensus 256 e~~~-~~dp-y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~ 331 (564)
T KOG1174|consen 256 SSTL-CANP-DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP 331 (564)
T ss_pred HHHh-hCCh-hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh--cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc
Confidence 9887 4333 2233333334456678888888887777665432 2344455556666678889999999887777655
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011236 311 KQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSII 390 (490)
Q Consensus 311 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 390 (490)
.+...|..-...+...|+.++|.-.|+..... -+-+..+|.-|+..|...|++.+|..+-+...+. ..-+..+...+
T Consensus 332 -r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~ 408 (564)
T KOG1174|consen 332 -RNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLF 408 (564)
T ss_pred -ccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhh
Confidence 56667777778888999999999999998875 2347889999999999999999998887766554 12255555555
Q ss_pred H-HHHhc-cCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccchhhhHHHHHHH
Q 011236 391 A-AGYAD-KNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQKRNMYHALTEAH 467 (490)
Q Consensus 391 ~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 467 (490)
. ..+.. ..--++|..++++.+. +.|+. .....+...|...|..+++..++++.....++....+.|++.+
T Consensus 409 g~~V~~~dp~~rEKAKkf~ek~L~-------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 409 GTLVLFPDPRMREKAKKFAEKSLK-------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIM 481 (564)
T ss_pred cceeeccCchhHHHHHHHHHhhhc-------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHH
Confidence 3 33333 2335789999998877 56776 5677788889999999999999999998888888888888888
Q ss_pred HhcC--CcHHHHHHHHHh
Q 011236 468 IRSG--QEVDGLLESMKA 483 (490)
Q Consensus 468 ~~~g--~~a~~~~~~m~~ 483 (490)
...+ ++|++.|.....
T Consensus 482 ~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhhhHHHHHHHHHHHHh
Confidence 8877 777777766554
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.42 E-value=9e-09 Score=94.94 Aligned_cols=385 Identities=16% Similarity=0.115 Sum_probs=187.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHH
Q 011236 81 SRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSL 159 (490)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~ 159 (490)
..+++...+.+.+.+++. .+-.+++.....-.+...|+-++|..........++ +.+.|..+.-.+-...++++|+..
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 445555566666655552 233444444444444455666666666655555443 455565555555555666666666
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC
Q 011236 160 MQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHI 239 (490)
Q Consensus 160 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 239 (490)
|......+.. |...|.-|.-.-.+.|+++.....-.+..+.. +.....|..+..++--.|+...|..++++......-
T Consensus 98 y~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6666555433 44444444444445555555555555554431 112334445555555556666666666555522222
Q ss_pred CCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCC
Q 011236 240 SMDWGTYSTVA------NYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQL 313 (490)
Q Consensus 240 ~~~~~~~~~li------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 313 (490)
.|+...|.-.. ....+.|..++|.+.+..-..... .....-..-...+.+.+++++|..+|..++... ||
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~--Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pd 251 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV--DKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PD 251 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH--HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--ch
Confidence 34444443221 223344555555555544333221 111112223344455556666666665554443 33
Q ss_pred hhhHH-HHHHHHHhcCCHHHHH-HHHH----------------------------------HHHhcCCCCCchhHHHHHH
Q 011236 314 NRDYI-TMLGSLVKIGELEEAE-KMLE----------------------------------EWELSCYCYDFRVPNIILL 357 (490)
Q Consensus 314 ~~~~~-~l~~~~~~~~~~~~a~-~~~~----------------------------------~~~~~~~~~~~~~~~~l~~ 357 (490)
...|. .+..++.+..+.-++. .+|. .+.+.|+++ ++..+..
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~S 328 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRS 328 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHH
Confidence 33332 2222222222222222 3333 333333322 2233333
Q ss_pred HHHhcCCHHHHHHHHHHHHH---c---CC------------CCCHHHH--HHHHHHHhccCCHHHHHHHHHHHHHhhhcC
Q 011236 358 GYSQKGMIEKADAVLKEIVK---K---GK------------TPTPNSW--SIIAAGYADKNNMEKAFECMKEALAVHEEN 417 (490)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~---~---~~------------~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 417 (490)
.|-.-...+ +++++.. . |- +|....| -.++..|-+.|+++.|..+++.+++
T Consensus 329 Lyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId----- 399 (700)
T KOG1156|consen 329 LYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID----- 399 (700)
T ss_pred HHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-----
Confidence 332222111 2222211 1 11 2333333 3455667777778888887777776
Q ss_pred cCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccchhhhH-HHHHHHHhcC--CcHHHHHHHHHhCCC
Q 011236 418 KFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQKRNMYH-ALTEAHIRSG--QEVDGLLESMKADDI 486 (490)
Q Consensus 418 ~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~l~~~~~~~g--~~a~~~~~~m~~~~~ 486 (490)
-.|+. ..|..=.+.+...|+.++|..++++..+.+......| --..-..+++ ++|.+++....+.|.
T Consensus 400 --HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 400 --HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred --cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 33554 3444445667777788888877777777665533333 4455555666 777777766665553
No 67
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=3.3e-10 Score=107.62 Aligned_cols=272 Identities=12% Similarity=0.091 Sum_probs=173.9
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccC-C-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011236 90 QVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED-K-VDKLYGALLNCYVREGLVDESLSLMQKMKEMG 167 (490)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 167 (490)
.++-.+...|+.|+..+|..+|..||..|+++.|- +|.-|.-.+ | +..+++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35556677777777788888888888888888777 776665554 3 5667888888777777776665
Q ss_pred CCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHH
Q 011236 168 SFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYS 247 (490)
Q Consensus 168 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 247 (490)
.|...||..|..+|...||... |+...+ -.-.+...+...|....-..++..+.-..+.-||...
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n-- 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN-- 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH--
Confidence 5677788888888888887655 222221 1122334455555555555555554324444466555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Q 011236 248 TVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKI 327 (490)
Q Consensus 248 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 327 (490)
.+......|-++.+++++..+...... .+ +..+++-+... +.-..++..........|++.+|..++.+-.-.
T Consensus 145 -~illlv~eglwaqllkll~~~Pvsa~~--~p--~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 145 -AILLLVLEGLWAQLLKLLAKVPVSAWN--AP--FQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAA 217 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHhhCCccccc--ch--HHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhc
Confidence 566666677777777777665332221 11 11123333322 233334444232222247788888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 011236 328 GELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADK 397 (490)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 397 (490)
|+.+.|..++.+|.+.|++.+..-|-.|+-+ .+...-+..+++-|.+.|+.|+..|+...+..+...
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N 284 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSN 284 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcc
Confidence 8888888888888888887777766666655 677777778888888888888888777666655553
No 68
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.40 E-value=1.6e-08 Score=93.21 Aligned_cols=428 Identities=11% Similarity=0.085 Sum_probs=257.7
Q ss_pred cccHHHhhccCCCCCCChHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011236 36 RNNLYSRISPLGDPDVSLTPVLDQWVL-EGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLI 114 (490)
Q Consensus 36 ~~~l~~~l~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (490)
|-..+..+.+.|+....- ..++.-.. ..+.-....|...+......+-++-++.+++..++. +|....-.+..+
T Consensus 105 wl~Ylq~l~~Q~~iT~tR-~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTR-RTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHhcchHHHHH-HHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 555555555555533221 13333222 234445556777777777888888888888888876 455577778888
Q ss_pred HhhcCHHHHHHHHHHccccC-------C-ChhHHHHHHHHHHhcCChhH---HHHHHHHHHhcCCCCC--cchHHHHHHH
Q 011236 115 GKVRGLESAETYFNSLNDED-------K-VDKLYGALLNCYVREGLVDE---SLSLMQKMKEMGSFGS--ALNYNGIMCL 181 (490)
Q Consensus 115 ~~~~~~~~A~~~~~~~~~~~-------p-~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p~--~~~~~~l~~~ 181 (490)
++.+++++|.+.+......+ + +...|.-+-+..++.-+.-. ...+++.+..+ -+| ...|.+|.+.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHH
Confidence 99999999999888876542 3 45677777777666544332 33344444433 223 3468999999
Q ss_pred HHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----------------C------ChHHHHHHHHHHHhCCCC
Q 011236 182 YTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGAR----------------S------ELSSMENVLQEMESQSHI 239 (490)
Q Consensus 182 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------g------~~~~a~~~~~~~~~~~~~ 239 (490)
|.+.|.+++|..+|++..+.- .++.-|..+.++|+.- + +++-...-|+.+.....+
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 999999999999999987742 2333444444444321 1 122333444444422111
Q ss_pred C----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccC----CChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011236 240 S----------MDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKS----KDALGYNHLISHYASLGNKDEMMKFWGLQ 305 (490)
Q Consensus 240 ~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (490)
- .++..|.. ..-+..|+..+-...|.+..+...+. .-...|..+...|-..|+++.|..+|++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 1 11222211 12233566777777787776543321 22356888999999999999999999977
Q ss_pred HHhcCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------CC------CCchhHHHHHHHHHhcCC
Q 011236 306 KIKCKKQLN----RDYITMLGSLVKIGELEEAEKMLEEWELSC-----------YC------YDFRVPNIILLGYSQKGM 364 (490)
Q Consensus 306 ~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~------~~~~~~~~l~~~~~~~g~ 364 (490)
..... +.. .+|..-...=.+..+++.|.++++.....- .+ -+...|...++.--..|-
T Consensus 414 ~~V~y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 414 TKVPY-KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hcCCc-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 65443 222 344444555556778888888887765321 11 123455566666667788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHc---CCCH
Q 011236 365 IEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGD---NRDV 440 (490)
Q Consensus 365 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~ 440 (490)
++....+++++++..+. ++.........+-.+.-++++.+.+++-+.+. -.|+. ..|+..+.-+.+ ....
T Consensus 493 festk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LF-----k~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLF-----KWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC-----CCccHHHHHHHHHHHHHHHhcCCCH
Confidence 99999999999887665 44443334444555666777777777766522 22444 455555544432 2357
Q ss_pred HHHHHHHHHHHhcccc--h-hhhHHHHHHHHhcC--CcHHHHHHHH
Q 011236 441 EEVEAFVSSLKIKVQK--R-NMYHALTEAHIRSG--QEVDGLLESM 481 (490)
Q Consensus 441 ~~a~~~~~~~~~~~~~--~-~~~~~l~~~~~~~g--~~a~~~~~~m 481 (490)
+.|..+|++..+..|+ . ..|-.....=-+.| ..|++++++.
T Consensus 567 EraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 567 ERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7788888887776665 1 22222222223345 6677777664
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.39 E-value=1.2e-08 Score=96.06 Aligned_cols=374 Identities=13% Similarity=0.011 Sum_probs=246.7
Q ss_pred CCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcch-H
Q 011236 98 QGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED-KVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALN-Y 175 (490)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~ 175 (490)
..+..++..|..+.-++...|+++.+.+.|++....- .....|+.+...|...|.-..|+.++++-......|+..+ +
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 3345678888888888888899999999998876543 3466788888888888988888888887665543343333 3
Q ss_pred HHHHHHHH-hcCCcCcHHHHHHHHHHC--CC--CCCHHHHHHHHHHHhcc----C-------ChHHHHHHHHHHHhCCCC
Q 011236 176 NGIMCLYT-NTGQHEKIPDVLLDMKEN--GV--PPDNFSYRICINSYGAR----S-------ELSSMENVLQEMESQSHI 239 (490)
Q Consensus 176 ~~l~~~~~-~~~~~~~a~~~~~~m~~~--~~--~p~~~~~~~li~~~~~~----g-------~~~~a~~~~~~~~~~~~~ 239 (490)
-..-..|. +.+..+++.++-.+.... +. ......|..+.-+|... . ...++.+.+++.. +.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av-~~d~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV-QFDP 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH-hcCC
Confidence 33333333 346677777766666551 11 11233444444444321 1 1235677777776 4333
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC------
Q 011236 240 -SMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQ------ 312 (490)
Q Consensus 240 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------ 312 (490)
.|++..| +.--|+..++++.|.+..++....+.. .+...|..+.-.+...+++.+|+.+.+......+..
T Consensus 476 ~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~-~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~ 552 (799)
T KOG4162|consen 476 TDPLVIFY--LALQYAEQRQLTSALDYAREALALNRG-DSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG 552 (799)
T ss_pred CCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh
Confidence 3444444 555677788899999988888887555 788888888888888889999998888666654320
Q ss_pred ---------C----hhhHHHHHHHHHh------cC-----------------CHHHHHHHHHHH----H----hcC----
Q 011236 313 ---------L----NRDYITMLGSLVK------IG-----------------ELEEAEKMLEEW----E----LSC---- 344 (490)
Q Consensus 313 ---------~----~~~~~~l~~~~~~------~~-----------------~~~~a~~~~~~~----~----~~~---- 344 (490)
+ ..|...++..+-. .+ +..++......+ . ..|
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 0 0111111111110 00 111111111100 0 001
Q ss_pred -----C--CCCc------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011236 345 -----Y--CYDF------RVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEAL 411 (490)
Q Consensus 345 -----~--~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (490)
. .|+. ..|......+.+.+..++|...+.+.....+. ....|......+...|.+++|.+.|..++
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 0 1111 13344556677788888888888777765432 55677777788889999999999999998
Q ss_pred HhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHH--HHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHHHh
Q 011236 412 AVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEA--FVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESMKA 483 (490)
Q Consensus 412 ~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m~~ 483 (490)
. +.|+. ....++...+.+.|+..-|.. ++..+.+.+|. +..|..++..+.+.| ++|.+.|+.-.+
T Consensus 712 ~-------ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 712 A-------LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred h-------cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 8 56776 688899999999999888888 99999999999 999999999999999 888888876543
No 70
>PF13041 PPR_2: PPR repeat family
Probab=99.38 E-value=1e-12 Score=82.09 Aligned_cols=49 Identities=24% Similarity=0.373 Sum_probs=25.9
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 011236 135 KVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYT 183 (490)
Q Consensus 135 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 183 (490)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4445555555555555555555555555555555555555555555544
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=2.9e-09 Score=90.98 Aligned_cols=194 Identities=9% Similarity=-0.043 Sum_probs=94.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcC-CCChhhHHHHHHHH-----HhcCCHHHHHHHHHHHHhcCCCCCchh-HHHHHH
Q 011236 285 LISHYASLGNKDEMMKFWGLQKIKCK-KQLNRDYITMLGSL-----VKIGELEEAEKMLEEWELSCYCYDFRV-PNIILL 357 (490)
Q Consensus 285 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~ 357 (490)
|+-.|.+.+++.+|..+.+.. .+ .|.......++.+. .......-|.+.|+..-.++..-|+.. -.++..
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl---~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDL---DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred heeeecccccHHHHHHHHhhc---CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 444456677777777665532 22 12222222222211 111234445555555544444333221 233444
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHH-HHHHHHHc
Q 011236 358 GYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVS-SILDWLGD 436 (490)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~ 436 (490)
.+.-..++++.+..++.+...=...|... -.+.++++..|++.+|.++|-.... ..+ -|..+|. .|.++|.+
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~-----~~i-kn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISG-----PEI-KNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcC-----hhh-hhhHHHHHHHHHHHHh
Confidence 44555566666666666655433323333 3456667777777777777766543 222 2234444 34456667
Q ss_pred CCCHHHHHHHHHHHHhcccchhhhHHHHHHHHhcC--CcHHHHHHHHHhCCCCC
Q 011236 437 NRDVEEVEAFVSSLKIKVQKRNMYHALTEAHIRSG--QEVDGLLESMKADDIDE 488 (490)
Q Consensus 437 ~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~~~~p 488 (490)
.|..+.|+.++-++...+..-.....+.+-|.+++ =-|...|+.+...+..|
T Consensus 441 nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred cCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 77777776655443322211333444555566666 34444555554444444
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.38 E-value=6.2e-10 Score=103.60 Aligned_cols=244 Identities=15% Similarity=0.108 Sum_probs=172.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhC----CCC-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhhhhc-----cC
Q 011236 208 FSYRICINSYGARSELSSMENVLQEMESQ----SHI-SMDWGT-YSTVANYYIIAGLKEKAIIYLKKCEDIVS-----KS 276 (490)
Q Consensus 208 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~ 276 (490)
.+...+...|...|+++.|+.+++..... .|. .|...+ .+.+...|...+++++|..+|+++..... ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777777788888777777766521 121 133333 33477788888999999888888764321 11
Q ss_pred CC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC------CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC
Q 011236 277 KD-ALGYNHLISHYASLGNKDEMMKFWGLQKIKCK------KQLN-RDYITMLGSLVKIGELEEAEKMLEEWELS---CY 345 (490)
Q Consensus 277 ~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 345 (490)
|. ..+++.|..+|.+.|++++|..+++....-.. .|.. ..++.+...|+..+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 21 25677778889999999888888776554321 1222 23667778888999999999998876543 12
Q ss_pred CCC----chhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C--CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 011236 346 CYD----FRVPNIILLGYSQKGMIEKADAVLKEIVKKG----K--TP-TPNSWSIIAAGYADKNNMEKAFECMKEALAVH 414 (490)
Q Consensus 346 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~----~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 414 (490)
.++ ..+++.|...|...|++++|.+++++.+... - .+ ....++.|...|.+.+++++|.++|.+...+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 3478899999999999999999999887531 1 11 23468889999999999999999999988866
Q ss_pred hcCcC-CCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 415 EENKF-WRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 415 ~~~~~-~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
...| -.|+. .+|..|...|...|+++.|.++.+....
T Consensus 440 -~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 -KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred -HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2233 33444 6889999999999999999999887653
No 73
>PF13041 PPR_2: PPR repeat family
Probab=99.38 E-value=1.5e-12 Score=81.24 Aligned_cols=50 Identities=28% Similarity=0.509 Sum_probs=35.9
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 011236 347 YDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD 396 (490)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 396 (490)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777777653
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.37 E-value=2.7e-09 Score=100.66 Aligned_cols=294 Identities=17% Similarity=0.076 Sum_probs=209.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHH-HHHHHHHHhc---
Q 011236 75 VIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLY-GALLNCYVRE--- 150 (490)
Q Consensus 75 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~li~~~~~~--- 150 (490)
....+...|++++|++.++.-...- .............+.+.|+.++|..++..+...+|+...| ..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I-~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQI-LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 3455678899999999998765553 4556677778899999999999999999999999965555 4455554222
Q ss_pred --CChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCc-CcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 011236 151 --GLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQH-EKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSME 227 (490)
Q Consensus 151 --g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 227 (490)
.+.+...++++++...- |.......+.-.+.....+ ..+...+..+...|++ .+|+.|-..|....+..-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 25677788898887764 3333333332222222233 2345566777788874 34566666666555555555
Q ss_pred HHHHHHHhC---C----------CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhc
Q 011236 228 NVLQEMESQ---S----------HISMDW--GTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASL 292 (490)
Q Consensus 228 ~~~~~~~~~---~----------~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 292 (490)
+++...... . .-+|+. .++..+...|...|++++|++++++.....+ ..+..|..-...+-+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP--t~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP--TLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHC
Confidence 555554311 1 112443 3456678889999999999999999988765 4578899999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhH--------HHHHHHHHhcCC
Q 011236 293 GNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVP--------NIILLGYSQKGM 364 (490)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~ 364 (490)
|++.+|.+.++.....+. -|...-+-.+..+.+.|++++|.+++....+.+..|-...+ .-...+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998777665 77778888889999999999999999999887654433222 345567889999
Q ss_pred HHHHHHHHHHHHH
Q 011236 365 IEKADAVLKEIVK 377 (490)
Q Consensus 365 ~~~A~~~~~~m~~ 377 (490)
+..|++.|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887766554
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.34 E-value=7.5e-08 Score=89.04 Aligned_cols=374 Identities=13% Similarity=0.080 Sum_probs=202.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHH
Q 011236 68 SELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNC 146 (490)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~ 146 (490)
...+.....-.+...|+-++|......-.+.+ .-+...+..+.-.+....++++|+..|......+| |...|.-+.-.
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslL 118 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLL 118 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 33344444444455566666666666655544 24455555555555556666777777766666665 45556555555
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCC-CCCCHHHHHHHH------HHHhc
Q 011236 147 YVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENG-VPPDNFSYRICI------NSYGA 219 (490)
Q Consensus 147 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li------~~~~~ 219 (490)
-++.|+++........+.+..+. ....|..+..++.-.|+...|..+.++..+.. -.|+...|.-.. ....+
T Consensus 119 Q~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E 197 (700)
T KOG1156|consen 119 QIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE 197 (700)
T ss_pred HHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 55666666666665555554222 34455666666666666666666666665543 234444433221 22344
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHH
Q 011236 220 RSELSSMENVLQEMESQSHISMDWGTY-STVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEM 298 (490)
Q Consensus 220 ~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 298 (490)
.|.++.|.+.+..-+ ..+ .|-..+ -.-...+.+.+++++|..++..+....+ .+...|-.+..++.+-.+.-++
T Consensus 198 ~g~~q~ale~L~~~e--~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP--dn~~Yy~~l~~~lgk~~d~~~~ 272 (700)
T KOG1156|consen 198 AGSLQKALEHLLDNE--KQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP--DNLDYYEGLEKALGKIKDMLEA 272 (700)
T ss_pred cccHHHHHHHHHhhh--hHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc--hhHHHHHHHHHHHHHHhhhHHH
Confidence 556666665555442 222 222222 2344556666666777666666665443 2223233333333222222222
Q ss_pred H-HHHHHHHHhcC-------------------------------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Q 011236 299 M-KFWGLQKIKCK-------------------------------KQLNRDYITMLGSLVKIGELEEAEKMLEEWELS--C 344 (490)
Q Consensus 299 ~-~~~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~ 344 (490)
+ .+|.......+ ..-+.++..+...|-.....+-.+++.-.+... |
T Consensus 273 lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~ 352 (700)
T KOG1156|consen 273 LKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSG 352 (700)
T ss_pred HHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhccc
Confidence 2 33332222111 011122333333332222222112222222211 1
Q ss_pred C------------CCCchhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHH
Q 011236 345 Y------------CYDFRVP--NIILLGYSQKGMIEKADAVLKEIVKKGKTPTPN-SWSIIAAGYADKNNMEKAFECMKE 409 (490)
Q Consensus 345 ~------------~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 409 (490)
. +|....| -.++..|-+.|+++.|..+++..++ -.|+.. .|..=.+.+...|++++|..++++
T Consensus 353 ~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~e 430 (700)
T KOG1156|consen 353 TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDE 430 (700)
T ss_pred ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 1 3444444 4567778899999999999998875 555543 344445788999999999999999
Q ss_pred HHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 410 ALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 410 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
+.++. .||...=.--.....++...++|.++.....+.+..
T Consensus 431 a~elD------~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~ 471 (700)
T KOG1156|consen 431 AQELD------TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFG 471 (700)
T ss_pred HHhcc------chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccc
Confidence 98822 244433335556667889999999999998887754
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=8.2e-08 Score=90.56 Aligned_cols=388 Identities=12% Similarity=0.005 Sum_probs=265.1
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccC--
Q 011236 57 LDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED-- 134 (490)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 134 (490)
++++.......+...|..+.-++...|+++.+.+.|++....-+ -..+.+..+...+...|.-..|..+++......
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 44444556777899999999999999999999999999877653 456777888888889999999999999876665
Q ss_pred C-ChhHHHHHHHHHH-hcCChhHHHHHHHHHHhc--CC--CCCcchHHHHHHHHHhcC-----------CcCcHHHHHHH
Q 011236 135 K-VDKLYGALLNCYV-REGLVDESLSLMQKMKEM--GS--FGSALNYNGIMCLYTNTG-----------QHEKIPDVLLD 197 (490)
Q Consensus 135 p-~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~--~~--~p~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~ 197 (490)
| +...+-..-..|. +.+.+++++++-.+.... +. ......|..+.-+|...- ...++.+.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 4 3334433334443 356677777766666551 11 113445555555554321 13466777888
Q ss_pred HHHCCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccC
Q 011236 198 MKENGV-PPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKS 276 (490)
Q Consensus 198 m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 276 (490)
..+.+. .|++..| +.--|+..++++.|.+..++.. ..+...+...|..+.-.+...+++.+|+.+.+......+..
T Consensus 470 av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL-~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREAL-ALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred HHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHH-HhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 877543 3433333 3444667789999999999998 77666888899999999999999999999998876543310
Q ss_pred ------------------CChhhHHHHHHHHHh-----------------------cCChhHHHHHHHHH--------HH
Q 011236 277 ------------------KDALGYNHLISHYAS-----------------------LGNKDEMMKFWGLQ--------KI 307 (490)
Q Consensus 277 ------------------~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~--------~~ 307 (490)
.-..|...++...-. ..+..++....+.. ..
T Consensus 547 ~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 547 HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence 001122222222210 00111111111100 00
Q ss_pred hc-----C------CCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 011236 308 KC-----K------KQLN------RDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADA 370 (490)
Q Consensus 308 ~~-----~------~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 370 (490)
.+ + .|+. ..|......+.+.+..++|...+.+..+. .+.....|......+...|..++|.+
T Consensus 627 ~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 627 AGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred cccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 00 0 1111 12445666777888888888888887765 45566677777788888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH--HHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHH
Q 011236 371 VLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFE--CMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVS 448 (490)
Q Consensus 371 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 448 (490)
.|......++. ++....++...+.+.|+...|.. ++.++++..| -++..|..+...+.+.|+.++|...|.
T Consensus 706 af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp------~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 706 AFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP------LNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 99999887655 67788999999999999888877 9999998332 455899999999999999999999999
Q ss_pred HHHhcccc
Q 011236 449 SLKIKVQK 456 (490)
Q Consensus 449 ~~~~~~~~ 456 (490)
......+.
T Consensus 779 aa~qLe~S 786 (799)
T KOG4162|consen 779 AALQLEES 786 (799)
T ss_pred HHHhhccC
Confidence 87766544
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=6.3e-09 Score=92.92 Aligned_cols=127 Identities=18% Similarity=-0.001 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 011236 245 TYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSL 324 (490)
Q Consensus 245 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 324 (490)
.|..+...|...|+.++|...|++..+..+ .+...|+.+...+...|++++|...|+......+ .+..++..+..++
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l 142 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRP--DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 344455555555555555555555555443 3455555555555555666666555555554433 3344455555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011236 325 VKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIV 376 (490)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 376 (490)
...|++++|.+.++...+. .|+..........+...++.++|...|++..
T Consensus 143 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 5555666666555555553 2222111111112233445556655554433
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.26 E-value=7.2e-08 Score=89.54 Aligned_cols=311 Identities=10% Similarity=-0.033 Sum_probs=155.5
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcch---HHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHH-
Q 011236 137 DKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALN---YNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRI- 212 (490)
Q Consensus 137 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~- 212 (490)
...|..+...+...|+.+.+...+........ ++... .......+...|++++|.+++++..+.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALA-ARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 33455555555556666665555555443321 12111 1122233445667777777776666542 123223331
Q ss_pred --HHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHH
Q 011236 213 --CINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYA 290 (490)
Q Consensus 213 --li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (490)
........+..+.+.+.++.. ....+........+...+...|++++|...+++.....+ .+...+..+...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p--~~~~~~~~la~i~~ 159 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP--DDAWAVHAVAHVLE 159 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHH
Confidence 111111234444444444432 222223334444556667777777777777777776554 45566677777777
Q ss_pred hcCChhHHHHHHHHHHHhcCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchhH-H--HHHHHHHhcC
Q 011236 291 SLGNKDEMMKFWGLQKIKCKK-QLN--RDYITMLGSLVKIGELEEAEKMLEEWELSCYC-YDFRVP-N--IILLGYSQKG 363 (490)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~-~--~l~~~~~~~g 363 (490)
..|++++|...+++.....+. ++. ..|..+...+...|++++|..++++....... +..... + .++.-+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 777777777777766654431 221 23445666777778888887777776543211 111111 1 2223333344
Q ss_pred CHHHHHHH--H-HHHHHcCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcC--cCCC-cchhhHHHHHHHHHc
Q 011236 364 MIEKADAV--L-KEIVKKGK-TPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEEN--KFWR-PKPSLVSSILDWLGD 436 (490)
Q Consensus 364 ~~~~A~~~--~-~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~-p~~~~~~~l~~~~~~ 436 (490)
..+.+.+. + ........ ............++...|+.+.|..+++.+....... .+.. ...........++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 33322222 1 11111100 0111222245566777888888888888776622110 0000 011122222234567
Q ss_pred CCCHHHHHHHHHHHHhc
Q 011236 437 NRDVEEVEAFVSSLKIK 453 (490)
Q Consensus 437 ~g~~~~a~~~~~~~~~~ 453 (490)
.|++++|.+.+......
T Consensus 320 ~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 320 EGNYATALELLGPVRDD 336 (355)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888888776654
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=1.4e-08 Score=81.90 Aligned_cols=202 Identities=13% Similarity=-0.022 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 011236 245 TYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSL 324 (490)
Q Consensus 245 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 324 (490)
+...|.-.|...|+...|..-+++..+..+ .+..+|..+...|.+.|+.+.|.+.|++.++..+ .+....|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP--s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP--SYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHH
Confidence 344566778888888888888888887665 5677788888888888888888888887777765 5667777777778
Q ss_pred HhcCCHHHHHHHHHHHHhcCC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 011236 325 VKIGELEEAEKMLEEWELSCY-CYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKA 403 (490)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 403 (490)
|..|++++|.+.|++....-. ..-..+|..+.-+..+.|+.+.|...|++.++..+. ...+...+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 888888888888888776522 122346777777777888888888888888887654 455677777888888888888
Q ss_pred HHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 404 FECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
..+++.... +..++..+....|+.-.+.|+.+.+-++=..+.+..|.
T Consensus 193 r~~~~~~~~------~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 193 RLYLERYQQ------RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHHHHh------cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 888888766 33377777777777777888888888777777777766
No 80
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4.3e-08 Score=88.72 Aligned_cols=397 Identities=12% Similarity=0.058 Sum_probs=206.9
Q ss_pred hccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHH
Q 011236 43 ISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLES 122 (490)
Q Consensus 43 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 122 (490)
....|+.+.++....+.+ .-. ++|-..|..=..++.+.|++++|++=-.+-.+.. |.-+..|.....++...|++++
T Consensus 12 a~s~~d~~~ai~~~t~ai-~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAI-MLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hcccccHHHHHHHHHHHH-ccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHH
Confidence 344566666666333332 121 2255556666666777777777766666655555 3455666666666667777777
Q ss_pred HHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHH---HHHHHHHHhc---CCCCCcchHHHHHHHHHhcC-------Cc
Q 011236 123 AETYFNSLNDEDK-VDKLYGALLNCYVREGLVDES---LSLMQKMKEM---GSFGSALNYNGIMCLYTNTG-------QH 188 (490)
Q Consensus 123 A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a---~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~-------~~ 188 (490)
|+.-|.+-.+.+| |...++-+..++.......+. -.++...... ........|..++..+-+.- +.
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 7777777666666 455566666655111000000 0000000000 00000111222221111100 00
Q ss_pred CcHHHHHHHHH--------HCC-------CCC------------C----------HHHHHHHHHHHhccCChHHHHHHHH
Q 011236 189 EKIPDVLLDMK--------ENG-------VPP------------D----------NFSYRICINSYGARSELSSMENVLQ 231 (490)
Q Consensus 189 ~~a~~~~~~m~--------~~~-------~~p------------~----------~~~~~~li~~~~~~g~~~~a~~~~~ 231 (490)
+...+..-.+. ..| ..| | ..-...+.++..+..+++.|++-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 00000000000 000 001 0 0113345555556666777777766
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHH-------HHHHHhcCChhHHHHHHHH
Q 011236 232 EMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHL-------ISHYASLGNKDEMMKFWGL 304 (490)
Q Consensus 232 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~ 304 (490)
... +.. .+..-++....+|...|.+.++...-+...+.|. ....-|+.+ ..+|.+.++++.+...|.+
T Consensus 249 ~a~-el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 249 KAL-ELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHH-hHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 665 333 4444555566667777776666665555444443 122223222 2344445666677777766
Q ss_pred HHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011236 305 QKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFR-VPNIILLGYSQKGMIEKADAVLKEIVKKGKTPT 383 (490)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 383 (490)
.......|+.. .+....+++........-. .|... -...-...+.+.|++..|...|.++++..+. |
T Consensus 324 aLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-D 391 (539)
T KOG0548|consen 324 ALTEHRTPDLL---------SKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-D 391 (539)
T ss_pred HhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-h
Confidence 55554443321 1223333333333332222 22211 1112245577888999999999999888755 8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhH
Q 011236 384 PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYH 461 (490)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~ 461 (490)
...|....-+|.+.|.+..|+.-.+..+++ .|+. ..|.-=..++....+++.|.+.|.+..+..|. ...-.
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL-------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~ 464 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIEL-------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAID 464 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 888999999999999999999888888872 3443 44544455566667888999999998888887 43333
Q ss_pred HHHHH
Q 011236 462 ALTEA 466 (490)
Q Consensus 462 ~l~~~ 466 (490)
.+.++
T Consensus 465 ~~~rc 469 (539)
T KOG0548|consen 465 GYRRC 469 (539)
T ss_pred HHHHH
Confidence 33333
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=5.4e-09 Score=97.43 Aligned_cols=241 Identities=18% Similarity=0.115 Sum_probs=179.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh-----ccCCChhh-HHHHHHHHHhcCChhHHHHHHHHHHHhcC-----
Q 011236 242 DWGTYSTVANYYIIAGLKEKAIIYLKKCEDIV-----SKSKDALG-YNHLISHYASLGNKDEMMKFWGLQKIKCK----- 310 (490)
Q Consensus 242 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 310 (490)
-..+...+...|...|++++|+.+++...+.. ...|...+ .+.+...|...+++++|..+|+++.....
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 35666679999999999999999999877651 11134333 34477788999999999999998875422
Q ss_pred -CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCCch-hHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 011236 311 -KQL-NRDYITMLGSLVKIGELEEAEKMLEEWELS-----C-YCYDFR-VPNIILLGYSQKGMIEKADAVLKEIVKK--- 378 (490)
Q Consensus 311 -~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~--- 378 (490)
.|. ..+++.|..+|.+.|++++|...++...+- | ..|.+. .++.+...|+..+++++|..++++..+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 222 245778888999999999999988876542 1 122222 3566777789999999999999877542
Q ss_pred CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCC-Ccc-hhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 379 GKTPT----PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFW-RPK-PSLVSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 379 ~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
-+.++ ..+++.|...|...|++++|.+++++++....+..|- .+. ...++.+...|.+.++.++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12222 3579999999999999999999999999865433332 233 35678888899999999999988875433
Q ss_pred ----cccc----hhhhHHHHHHHHhcC--CcHHHHHHHHH
Q 011236 453 ----KVQK----RNMYHALTEAHIRSG--QEVDGLLESMK 482 (490)
Q Consensus 453 ----~~~~----~~~~~~l~~~~~~~g--~~a~~~~~~m~ 482 (490)
.||. ..+|..|...|.+.| +.|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444 678999999999999 88888877664
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.1e-08 Score=85.84 Aligned_cols=311 Identities=13% Similarity=0.011 Sum_probs=216.8
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhh--cCHHHHHHHHH--HccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 011236 94 WMSGQGLAFSVHDHAVQLDLIGKV--RGLESAETYFN--SLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGS 168 (490)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~--~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 168 (490)
.|-....++...+....+.+++.+ ++...|...+- +....-| |+.....+...+...|+.++|+..|+.....++
T Consensus 184 ~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp 263 (564)
T KOG1174|consen 184 VMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP 263 (564)
T ss_pred hhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh
Confidence 344444455555555555555543 44444444443 3333335 688888999999999999999999998877632
Q ss_pred CCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHH
Q 011236 169 FGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYST 248 (490)
Q Consensus 169 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 248 (490)
- ++.....-.-.+.+.|+.+....+...+.... .-+...|-.-+......+++..|+.+-++.+ +.+. -+...|-.
T Consensus 264 y-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I-~~~~-r~~~alil 339 (564)
T KOG1174|consen 264 D-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCI-DSEP-RNHEALIL 339 (564)
T ss_pred h-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHh-ccCc-ccchHHHh
Confidence 1 22222222333457788888888877776532 1223333333444556788999999988887 6554 55666655
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHH-HHHH-h
Q 011236 249 VANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITML-GSLV-K 326 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~ 326 (490)
-...+...++.++|.=.|+......+ .+...|..|+.+|...|++.+|.-.-+.....-+ .+..+...+. ..|. .
T Consensus 340 KG~lL~~~~R~~~A~IaFR~Aq~Lap--~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~-~sA~~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 340 KGRLLIALERHTQAVIAFRTAQMLAP--YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ-NSARSLTLFGTLVLFPD 416 (564)
T ss_pred ccHHHHhccchHHHHHHHHHHHhcch--hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh-cchhhhhhhcceeeccC
Confidence 66778889999999999998877665 5788899999999999999999888776666544 5566666553 3333 2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 011236 327 IGELEEAEKMLEEWELSCYCYD-FRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFE 405 (490)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 405 (490)
..--++|..+++...+. .|+ ....+.+...+...|+.+.+..++++-... .||....+.|.+.+...+.+++|++
T Consensus 417 p~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred chhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHH
Confidence 33457788888887764 444 335567777888899999999999888764 5789999999999999999999999
Q ss_pred HHHHHHHhhh
Q 011236 406 CMKEALAVHE 415 (490)
Q Consensus 406 ~~~~~~~~~~ 415 (490)
.|..++..+|
T Consensus 493 ~y~~ALr~dP 502 (564)
T KOG1174|consen 493 YYYKALRQDP 502 (564)
T ss_pred HHHHHHhcCc
Confidence 9988888665
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=8.3e-09 Score=92.17 Aligned_cols=219 Identities=13% Similarity=0.050 Sum_probs=116.6
Q ss_pred CChhHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHH
Q 011236 83 KRFKHALQVSEWMSGQGL---AFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLS 158 (490)
Q Consensus 83 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~ 158 (490)
+..+.++.-+.+++.... ......+......+...|+.++|...|+......| +..+|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 344555666666654331 11123355555566666777777777777666666 46667777777777777777777
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCC
Q 011236 159 LMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSH 238 (490)
Q Consensus 159 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 238 (490)
.|++..+..+. +..+|..+..++...|++++|.+.|+...+.. |+..........+...+++++|...|++.. ...
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~-~~~ 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY-EKL 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH-hhC
Confidence 77777665433 45566666666666777777777777766542 332211112222334556777777775543 221
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC
Q 011236 239 ISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKS-----KDALGYNHLISHYASLGNKDEMMKFWGLQKIKCK 310 (490)
Q Consensus 239 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 310 (490)
. ++...+ .......|+.+.+ ..+..+....... ....+|..+...+.+.|++++|...|++.....+
T Consensus 196 ~-~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 D-KEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred C-ccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1 221111 1222234444333 2333332211000 1234566666666677777777777766665543
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=1.3e-08 Score=82.08 Aligned_cols=200 Identities=10% Similarity=0.010 Sum_probs=154.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 011236 139 LYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYG 218 (490)
Q Consensus 139 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 218 (490)
+..-|.-.|.+.|+...|..-+++..+..+. +..+|..+...|.+.|+.+.|.+-|+...+... -+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 3556677788888888888888888887554 666788888888888888888888888877532 25567777777788
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHH
Q 011236 219 ARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEM 298 (490)
Q Consensus 219 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 298 (490)
..|++++|...|++.........-..+|..+.-|..+.|+.+.|...|++..+..+ ....+...+.....+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp--~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP--QFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc--CCChHHHHHHHHHHhcccchHH
Confidence 88888888888888775555545566777788888888888888888888877665 4556677888888888888888
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011236 299 MKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELS 343 (490)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 343 (490)
..+++.....++ ++..+.-..|+.-...|+.+.+.+.=..+.+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888887777666 77788877888888888888777776666654
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.22 E-value=1.1e-07 Score=88.20 Aligned_cols=199 Identities=13% Similarity=0.080 Sum_probs=95.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCCh--hhHHHHHHHH
Q 011236 212 ICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDA--LGYNHLISHY 289 (490)
Q Consensus 212 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~ 289 (490)
.+...+...|++++|...+++.. +... .+...+..+..++...|++++|...+++.....+..++. ..|..+...+
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al-~~~p-~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRAL-ELNP-DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-hhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 34445555666666666666665 4332 334455555666666666666666666555433210111 2233455556
Q ss_pred HhcCChhHHHHHHHHHHHhcCC-CChhhH-H--HHHHHHHhcCCHHHHHHH--HHHHHhcCCCCCchhH--HHHHHHHHh
Q 011236 290 ASLGNKDEMMKFWGLQKIKCKK-QLNRDY-I--TMLGSLVKIGELEEAEKM--LEEWELSCYCYDFRVP--NIILLGYSQ 361 (490)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~-~--~l~~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~--~~l~~~~~~ 361 (490)
...|++++|..++++.....+. +..... + .++.-+...|....+.+. +........+.....+ .....++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 6666666666666654322210 111111 1 122222223322222222 1111111011111112 245556677
Q ss_pred cCCHHHHHHHHHHHHHcCCCC--------CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 362 KGMIEKADAVLKEIVKKGKTP--------TPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 362 ~g~~~~A~~~~~~m~~~~~~p--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
.|+.+.|..+++.+......+ .....-....++...|+.++|.+.+..++.
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788888888887776532110 111222223345678899999998888877
No 86
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=5.4e-08 Score=83.40 Aligned_cols=364 Identities=11% Similarity=0.006 Sum_probs=211.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccC-------------CChhH----
Q 011236 77 RQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED-------------KVDKL---- 139 (490)
Q Consensus 77 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------p~~~~---- 139 (490)
..+-..|++++|+..+..+.... .++......+..+..-.|.+.+|..+-...++.. -|..-
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHH
Confidence 44457799999999999888765 4555666666666667788888888766654321 01110
Q ss_pred ----------HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHH-HHHHhcCCcCcHHHHHHHHHHCCCCCCHH
Q 011236 140 ----------YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIM-CLYTNTGQHEKIPDVLLDMKENGVPPDNF 208 (490)
Q Consensus 140 ----------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 208 (490)
--+|.....-.-.+.+|++++.+....+ |+-...|.-+ -+|.+..-++-+.+++.-..+. ++.++.
T Consensus 144 h~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdSti 220 (557)
T KOG3785|consen 144 HSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTI 220 (557)
T ss_pred HHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHH
Confidence 1112222222334667777777776653 3444444433 3456667777777777776653 333334
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHh-------------CCCC------------CCC-----HHHHHHHHHHHHHcCC
Q 011236 209 SYRICINSYGARSELSSMENVLQEMES-------------QSHI------------SMD-----WGTYSTVANYYIIAGL 258 (490)
Q Consensus 209 ~~~~li~~~~~~g~~~~a~~~~~~~~~-------------~~~~------------~~~-----~~~~~~li~~~~~~~~ 258 (490)
..|.......+.=+-..|+.-...+.. +.++ -|. +.+--.|+-.|.+.++
T Consensus 221 A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~d 300 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQND 300 (557)
T ss_pred HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccccc
Confidence 444433332221111111111111110 1110 011 1222235566888999
Q ss_pred HHHHHHHHHHHhhhhccCCChhhHHHH-----HHHHHhcCChhHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhcCCHHH
Q 011236 259 KEKAIIYLKKCEDIVSKSKDALGYNHL-----ISHYASLGNKDEMMKFWGLQKIKCK-KQLNRDYITMLGSLVKIGELEE 332 (490)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 332 (490)
+.+|..+.+++.. ..|-......+ .+-........-|.+.|...-.... ..+...-.++..++.-..++++
T Consensus 301 VqeA~~L~Kdl~P---ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFdd 377 (557)
T KOG3785|consen 301 VQEAISLCKDLDP---TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDD 377 (557)
T ss_pred HHHHHHHHhhcCC---CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHH
Confidence 9999998887532 11222222222 2212222345567777763322222 2222334566677777788899
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhccCCHHHHHHHHHHHH
Q 011236 333 AEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSI-IAAGYADKNNMEKAFECMKEAL 411 (490)
Q Consensus 333 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~ 411 (490)
+...+..+..-=...|...+| +..+++..|.+.+|.++|-.+....++ |..+|.+ |.++|.+.+.++.|+.++-++-
T Consensus 378 Vl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 378 VLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 998888887763344444444 789999999999999999887766555 6666654 5578889999999988776643
Q ss_pred HhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccch
Q 011236 412 AVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQKR 457 (490)
Q Consensus 412 ~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 457 (490)
. ..+. .....+...|.+.+.+=-|-+.|+.+...+|.+
T Consensus 456 t--------~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 456 T--------PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred C--------chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 3 1222 334455567888888888888888888777663
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=8.2e-08 Score=80.37 Aligned_cols=394 Identities=14% Similarity=0.030 Sum_probs=213.7
Q ss_pred cccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHH
Q 011236 36 RNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAV-QLDLI 114 (490)
Q Consensus 36 ~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 114 (490)
+.+.+-.+.+..+..+++. ++....++ .+.+...++.|...|-...++..|-+.++++...- |...-|.. -...+
T Consensus 13 ftaviy~lI~d~ry~DaI~-~l~s~~Er-~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQ-LLGSELER-SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHH-HHHHHHhc-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 4455555555555555444 33222222 12255555666666666666666666666665543 22222222 23445
Q ss_pred HhhcCHHHHHHHHHHccccCCChhHHHHH--HH--HHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCc
Q 011236 115 GKVRGLESAETYFNSLNDEDKVDKLYGAL--LN--CYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEK 190 (490)
Q Consensus 115 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~l--i~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 190 (490)
.+.+.+.+|+++...|... ++ ..+.. +. .....+++..+..++++....| +..+.+.......+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~-~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN-PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC-HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 5566666666666655542 11 11111 11 1223555666666666555322 44455555555568889999
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCC-------------CCH-------------
Q 011236 191 IPDVLLDMKEN-GVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHIS-------------MDW------------- 243 (490)
Q Consensus 191 a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~~------------- 243 (490)
|.+-|+...+- |.. ....|+..+ ++.+.|+.+.|++...++. ++|++ ||+
T Consensus 163 AvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIi-eRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEII-ERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHH-HhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 99999988774 454 445676544 4556788999998888887 44432 121
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHH
Q 011236 244 --GTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITML 321 (490)
Q Consensus 244 --~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 321 (490)
..+|.-...+.+.++++.|.+.+..|........|++|...+.-.- ..+++.+..+-+.-+....+ -...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHH
Confidence 1222223345677889999988888865444336777776654432 24555566666665666555 5667888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-CCchhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 011236 322 GSLVKIGELEEAEKMLEEWELSCYC-YDFRVPNIILLGYS-QKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNN 399 (490)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 399 (490)
-.||+..-++.|-.++.+-...... .+...|+ |++++. ..-..++|.+-++.+...- .-......+-++--...++
T Consensus 318 llyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l-~~kLRklAi~vQe~r~~~d 395 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML-TEKLRKLAIQVQEARHNRD 395 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccc
Confidence 9999998888888887763322111 1233343 334433 3445677776665554320 0000111111111111222
Q ss_pred ---HHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 011236 400 ---MEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQ 455 (490)
Q Consensus 400 ---~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 455 (490)
...+++-+++.++ .-..+...-.+.+++..|+..++++|+.-.+-..
T Consensus 396 d~a~R~ai~~Yd~~LE---------~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 396 DEAIRKAVNEYDETLE---------KYLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 2223333333333 1112233334566788899999999987665443
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.11 E-value=2.5e-09 Score=94.00 Aligned_cols=253 Identities=18% Similarity=0.102 Sum_probs=135.1
Q ss_pred HHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011236 182 YTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEK 261 (490)
Q Consensus 182 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 261 (490)
+.-.|++..++.-.+ ........+......+.+++...|+.+. ++.++. ... .|.......+...+...++-+.
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~---vl~ei~-~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDS---VLSEIK-KSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHH---HHHHS--TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhH---HHHHhc-cCC-ChhHHHHHHHHHHHhCccchHH
Confidence 334566666664444 2221111223344455666777776654 334443 222 4555555444444433344455
Q ss_pred HHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011236 262 AIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWE 341 (490)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (490)
++.-+++.........+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555443332221022222233334455667777777776521 344556666777777777777777777776
Q ss_pred hcCCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcC
Q 011236 342 LSCYCYDFRVPNIILLGYSQ----KGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEEN 417 (490)
Q Consensus 342 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 417 (490)
+. ..| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++++++...
T Consensus 159 ~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--- 231 (290)
T PF04733_consen 159 QI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--- 231 (290)
T ss_dssp CC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----
T ss_pred hc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---
Confidence 64 223 233334444332 23577777777776654 34567777777777777777777777777776511
Q ss_pred cCCCcchhhHHHHHHHHHcCCCH-HHHHHHHHHHHhcccc
Q 011236 418 KFWRPKPSLVSSILDWLGDNRDV-EEVEAFVSSLKIKVQK 456 (490)
Q Consensus 418 ~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~ 456 (490)
.-++.+...++-+....|+. +.+.+++.++....|.
T Consensus 232 ---~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 232 ---PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp ---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred ---cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 12345666666666666666 5666777777766654
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.09 E-value=1.3e-06 Score=91.80 Aligned_cols=343 Identities=11% Similarity=-0.023 Sum_probs=218.1
Q ss_pred HHHhhcCHHHHHHHHHHccccC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC------CCCc--chHHHHHHHH
Q 011236 113 LIGKVRGLESAETYFNSLNDED--KVDKLYGALLNCYVREGLVDESLSLMQKMKEMGS------FGSA--LNYNGIMCLY 182 (490)
Q Consensus 113 ~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------~p~~--~~~~~l~~~~ 182 (490)
.....|+++.+..+++.++... .+..........+...|++++|..++......-- .|.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677787778877764321 1222233445555678999999999988754311 1111 1122233455
Q ss_pred HhcCCcCcHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHh---CCCC-CCCHHHHHHHHHHHH
Q 011236 183 TNTGQHEKIPDVLLDMKENGVPPDN----FSYRICINSYGARSELSSMENVLQEMES---QSHI-SMDWGTYSTVANYYI 254 (490)
Q Consensus 183 ~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~-~~~~~~~~~li~~~~ 254 (490)
...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++... ..+. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999988763111121 2345566677889999999999888762 1121 111234556777889
Q ss_pred HcCCHHHHHHHHHHHhhhhccC--C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC--CC--ChhhHHHHHHHH
Q 011236 255 IAGLKEKAIIYLKKCEDIVSKS--K----DALGYNHLISHYASLGNKDEMMKFWGLQKIKCK--KQ--LNRDYITMLGSL 324 (490)
Q Consensus 255 ~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~--~~~~~~~l~~~~ 324 (490)
..|++++|...+++........ + ....+..+...+...|++++|...+.+...... .+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 9999999999988865532110 1 123344556667778999999999887655322 11 223445566777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC-chhH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHh
Q 011236 325 VKIGELEEAEKMLEEWELSCYCYD-FRVP-----NIILLGYSQKGMIEKADAVLKEIVKKGKTPTP---NSWSIIAAGYA 395 (490)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~ 395 (490)
...|+.++|.+.+........... ...+ ...+..+...|+.+.|...+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 889999999999988755311111 1111 11224455689999999988775542211111 12456677888
Q ss_pred ccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 396 DKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 396 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
..|++++|...++++..... ..|..++. .+...+..++.+.|+.++|...+.++.+....
T Consensus 703 ~~g~~~~A~~~l~~al~~~~-~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 703 LLGQFDEAEIILEELNENAR-SLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 99999999999999887432 12333322 45667777889999999999999998876544
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.09 E-value=1.2e-06 Score=75.16 Aligned_cols=316 Identities=10% Similarity=0.022 Sum_probs=184.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhH-HHHHHHH
Q 011236 68 SELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKL-YGALLNC 146 (490)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~li~~ 146 (490)
++.-.-.+-+.+...|.+..|+.-|...++.+ +.+-.++..-...|...|+-.-|+.=|+...+..||-.. --.-...
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 33334445555666666666666666665543 112222222234555556666666666666655555211 1112234
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 011236 147 YVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSM 226 (490)
Q Consensus 147 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 226 (490)
+.+.|.+++|..=|+....... +..+ ...+..+.- ..+++ ......+..+...|+...|
T Consensus 116 llK~Gele~A~~DF~~vl~~~~--s~~~---~~eaqskl~-------~~~e~---------~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEP--SNGL---VLEAQSKLA-------LIQEH---------WVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCC--Ccch---hHHHHHHHH-------hHHHH---------HHHHHHHHHHhcCCchhhH
Confidence 5566666666666666655422 1111 000100000 00000 1112233445567777788
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011236 227 ENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQK 306 (490)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 306 (490)
+.....+. +..+ -|...|..-..+|...|++..|+.=++...+... .+..++--+-..+...|+.+.++...++.+
T Consensus 175 i~~i~~ll-Ei~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~--DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 175 IEMITHLL-EIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ--DNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred HHHHHHHH-hcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc--cchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 88777777 4444 5666777777788888888888777766655443 456666666777777787777777777666
Q ss_pred HhcCCCChhh----HHH---H------HHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHhcCCHHHHHH
Q 011236 307 IKCKKQLNRD----YIT---M------LGSLVKIGELEEAEKMLEEWELSCYCYDF---RVPNIILLGYSQKGMIEKADA 370 (490)
Q Consensus 307 ~~~~~~~~~~----~~~---l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~ 370 (490)
...+ +... |.. + +......++|.++.+-.+...+....... ..+..+..+|...|++.+|++
T Consensus 251 Kldp--dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KLDP--DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred ccCc--chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 5443 3221 111 1 12234456777777777777765433222 234456677778899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 371 VLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 371 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
...+.++..+. |+.++.--..+|.-...++.|+.-|+.+.+
T Consensus 329 qC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 329 QCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 99998886433 578888888899989999999999999988
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.06 E-value=2.1e-06 Score=90.38 Aligned_cols=334 Identities=9% Similarity=-0.049 Sum_probs=210.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCC--C----CCCH--HHHHHHHHH
Q 011236 145 NCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENG--V----PPDN--FSYRICINS 216 (490)
Q Consensus 145 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~----~p~~--~~~~~li~~ 216 (490)
......|+++.+..+++.+.......+..........+...|+++++..++......- . .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3445567777777777665322112233333444555667899999999988775431 1 1111 122233345
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccC--C--ChhhHHHHHHH
Q 011236 217 YGARSELSSMENVLQEMESQSHISMD----WGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKS--K--DALGYNHLISH 288 (490)
Q Consensus 217 ~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~--~~~~~~~l~~~ 288 (490)
+...|++++|...+++.. ......+ ....+.+...+...|++++|...+++........ + ...++..+...
T Consensus 462 ~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELAL-AELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHH-hcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 667999999999999876 3211122 1344566777888999999999998876432210 1 12345566777
Q ss_pred HHhcCChhHHHHHHHHHHHhcC---CC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC--CchhHHHHHH
Q 011236 289 YASLGNKDEMMKFWGLQKIKCK---KQ----LNRDYITMLGSLVKIGELEEAEKMLEEWELSC--YCY--DFRVPNIILL 357 (490)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~---~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~ 357 (490)
+...|++++|...+++...... .+ ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 8889999999999887655321 11 12234455666777899999999998876531 112 1233445666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc---hhhHH
Q 011236 358 GYSQKGMIEKADAVLKEIVKKGKTP-TPNSW-----SIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK---PSLVS 428 (490)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~---~~~~~ 428 (490)
.+...|+.+.|...+.......... ....+ ...+..+...|+.+.|.+++..... ...... ...+.
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~-----~~~~~~~~~~~~~~ 695 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK-----PEFANNHFLQGQWR 695 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC-----CCCccchhHHHHHH
Confidence 7788999999999998885531111 11111 1122444568899999998877544 111111 11234
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcc----cc---hhhhHHHHHHHHhcC--CcHHHHHHHHHhC
Q 011236 429 SILDWLGDNRDVEEVEAFVSSLKIKV----QK---RNMYHALTEAHIRSG--QEVDGLLESMKAD 484 (490)
Q Consensus 429 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~---~~~~~~l~~~~~~~g--~~a~~~~~~m~~~ 484 (490)
.+..++...|++++|...+++..... .. ..++..+..++.+.| ++|...+.+..+.
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56677888999999999999876642 21 456778888889999 7888888877653
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=3.7e-08 Score=89.95 Aligned_cols=223 Identities=17% Similarity=0.128 Sum_probs=152.8
Q ss_pred HHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcH
Q 011236 113 LIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKI 191 (490)
Q Consensus 113 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 191 (490)
-+.+.|++.+|.-.|+.....+| +..+|-.|.......++-..|+..+.+..+..+. |....-.|.-.|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 34567778888888888888777 5778888888888888888888888888887554 666666777777777877788
Q ss_pred HHHHHHHHHCCCC--------CCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011236 192 PDVLLDMKENGVP--------PDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAI 263 (490)
Q Consensus 192 ~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 263 (490)
++.++.-+...++ ++...-.. ..+.....+....++|-++....+..+|..++..|.-.|...|++++|+
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8877776553211 00000000 1122223344555666666535554567777777877888888888888
Q ss_pred HHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011236 264 IYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWE 341 (490)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (490)
+.|+......| .|...||-|...++...+..+|+..|.+.++..+ .-++....|.-+|...|.+.+|...|-..+
T Consensus 451 Dcf~~AL~v~P--nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP-~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVKP--NDYLLWNRLGATLANGNRSEEAISAYNRALQLQP-GYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcCC--chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC-CeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 88888777665 5777888888888888888888888887777665 344455556666777888888777776554
No 93
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=9.9e-06 Score=74.67 Aligned_cols=351 Identities=10% Similarity=0.042 Sum_probs=204.2
Q ss_pred HHHHH--hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-C--hhHHHHHHHHHHhc
Q 011236 76 IRQLR--SRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-V--DKLYGALLNCYVRE 150 (490)
Q Consensus 76 l~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~--~~~~~~li~~~~~~ 150 (490)
=.+|| +.++.++|+..++... +.+..+...-...+.+.|++++|..+|+.+.+.+. + ...-..++.+-..
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~- 158 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA- 158 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-
Confidence 34444 6788999999888222 23455777778889999999999999999977652 2 1112222211110
Q ss_pred CChhHHHHHHHHHHhcCCCCCcchHHHHHH---HHHhcCCcCcHHHHHHHHHHCC-------------CCCCHHH-HHHH
Q 011236 151 GLVDESLSLMQKMKEMGSFGSALNYNGIMC---LYTNTGQHEKIPDVLLDMKENG-------------VPPDNFS-YRIC 213 (490)
Q Consensus 151 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~---~~~~~~~~~~a~~~~~~m~~~~-------------~~p~~~~-~~~l 213 (490)
-.+ .+. ......| ..+|..+.+ .+...|++.+|+++++...+.+ +.-+..+ -..+
T Consensus 159 ---l~~-~~~---q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl 230 (652)
T KOG2376|consen 159 ---LQV-QLL---QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL 230 (652)
T ss_pred ---hhH-HHH---HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 111 122 2222222 345554443 4557799999999988873211 1111111 1234
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHcCCHH----------------HHHHHH-------
Q 011236 214 INSYGARSELSSMENVLQEMESQSHISMDWGTY----STVANYYIIAGLKE----------------KAIIYL------- 266 (490)
Q Consensus 214 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~----------------~a~~~~------- 266 (490)
.-++-..|+.++|..+|.... ..+. +|.... |.|+..-....-++ .+...|
T Consensus 231 ayVlQ~~Gqt~ea~~iy~~~i-~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 231 AYVLQLQGQTAEASSIYVDII-KRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHHHhcchHHHHHHHHHHH-HhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455667899999999998887 5554 443221 22221110000000 000000
Q ss_pred ------------------HHHhhhhccCCChhhHHHHHHHHHh--cCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Q 011236 267 ------------------KKCEDIVSKSKDALGYNHLISHYAS--LGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVK 326 (490)
Q Consensus 267 ------------------~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 326 (490)
++.....+.......+.+++..+.+ ......+..++.......+.........++.....
T Consensus 309 i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 309 IYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 0000111110112334444444332 22456666666655555443334566677788889
Q ss_pred cCCHHHHHHHHH--------HHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHH----HHHHHHH
Q 011236 327 IGELEEAEKMLE--------EWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKK--GKTPTPN----SWSIIAA 392 (490)
Q Consensus 327 ~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~----~~~~l~~ 392 (490)
.|+++.|.+++. .+.+.+..|. +...+...|.+.++-+.|..++.+.+.. .-.+... ++..+..
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 999999999999 5555444444 4556777788888877788888776542 1111222 3444444
Q ss_pred HHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 011236 393 GYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSL 450 (490)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 450 (490)
.-.+.|+-++|..++++.++ -..+|..+...++.+|++. +.+.|..+-+.+
T Consensus 467 f~lr~G~~~ea~s~leel~k------~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVK------FNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhcCchHHHHHHHHHHHH------hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 55678999999999999998 3346778999999999886 688888776654
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=2.9e-08 Score=90.56 Aligned_cols=242 Identities=14% Similarity=0.093 Sum_probs=187.3
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCCh
Q 011236 216 SYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNK 295 (490)
Q Consensus 216 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 295 (490)
-+.+.|++.+|.-.|+... ..++ -+...|-.|.......++-..|+..+.+..+..+ .|......|.-.|...|.-
T Consensus 294 ~lm~nG~L~~A~LafEAAV-kqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP--~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAV-KQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDP--TNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHhcCCchHHHHHHHHHH-hhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC--ccHHHHHHHHHHHhhhhhH
Confidence 3567899999999999988 6665 6788898899999999999999999999988776 6888899999999999999
Q ss_pred hHHHHHHHHHHHhcCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCchhHHHHHHHHHhcCCHH
Q 011236 296 DEMMKFWGLQKIKCKK--------QLNRDYITMLGSLVKIGELEEAEKMLEEWE-LSCYCYDFRVPNIILLGYSQKGMIE 366 (490)
Q Consensus 296 ~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~ 366 (490)
..|+..++.-+...++ ++...-.. ..+..........++|-++. ..+..+|..+...|.-.|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999887665531 01100000 12222233445555555554 4444578888888998999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHH
Q 011236 367 KADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEA 445 (490)
Q Consensus 367 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~ 445 (490)
+|...|+.++...+. |..+||.|...++...+.++|+..|+++++ ++|+. .....|.-.|...|.+++|.+
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq-------LqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ-------LQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh-------cCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 999999999997665 888999999999999999999999999998 66877 677788889999999999998
Q ss_pred HHHHHHhcccc-----------hhhhHHHHHHHHhcC
Q 011236 446 FVSSLKIKVQK-----------RNMYHALTEAHIRSG 471 (490)
Q Consensus 446 ~~~~~~~~~~~-----------~~~~~~l~~~~~~~g 471 (490)
.|-.+...... ..+|.+|=.++.-.+
T Consensus 520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMN 556 (579)
T ss_pred HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcC
Confidence 88765443211 247777776666666
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=8.6e-09 Score=90.64 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH-HHHHHHHH
Q 011236 330 LEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNM-EKAFECMK 408 (490)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~ 408 (490)
+.+|.-+|+++.+. ..+++.+.+.+..++...|++++|..++.+..+.+.. |+.+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44555555554333 3344444555555555555555555555555444333 444444455444444444 34444555
Q ss_pred HHHH
Q 011236 409 EALA 412 (490)
Q Consensus 409 ~~~~ 412 (490)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 5444
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.1e-05 Score=78.81 Aligned_cols=358 Identities=11% Similarity=0.104 Sum_probs=164.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhhcCHHHHHHHHHHccccC-C---ChhHH
Q 011236 67 ISELELQRVIRQLRSRKRFKHALQVSEWMSGQGL--AFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED-K---VDKLY 140 (490)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p---~~~~~ 140 (490)
.|...|..++.-- -.--.++.++..+.++ .-+|......+.++...+-..+-+++++++.-.. + +...-
T Consensus 950 ~D~~LW~~VL~e~-----n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQ 1024 (1666)
T KOG0985|consen 950 SDPDLWAKVLNEE-----NPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQ 1024 (1666)
T ss_pred cChHHHHHHHhcc-----ChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhh
Confidence 3555666555311 1112345555555444 3455566666666666666666666666654432 1 12223
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 011236 141 GALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGAR 220 (490)
Q Consensus 141 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 220 (490)
|.|+-...+. +.....+..+++-..+. |+ +...+..++-+++|+.+|+... .+....+.|+.- .
T Consensus 1025 nLLiLtAika-d~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i 1088 (1666)
T KOG0985|consen 1025 NLLILTAIKA-DRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---I 1088 (1666)
T ss_pred hhHHHHHhhc-ChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---h
Confidence 3333333332 33344444444433311 11 2233334455555665555432 233334444432 2
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHH
Q 011236 221 SELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMK 300 (490)
Q Consensus 221 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 300 (490)
+.++.|.++-++.. .+..|+.+..+-.+.|.+.+|++-|-+. .|+..|..++....+.|.|++-.+
T Consensus 1089 ~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred hhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 44555555444442 1233555555555555555555544331 344455555555555555555555
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Q 011236 301 FWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKK-- 378 (490)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-- 378 (490)
++....+....|. .=+.|+-+|++.++..+.++++ ..|+......+.+-|...|.++.|.-+|.....-
T Consensus 1155 yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~ 1225 (1666)
T KOG0985|consen 1155 YLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAK 1225 (1666)
T ss_pred HHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHH
Confidence 5553333322222 2234555555555554443332 1233333333444444444444443333221100
Q ss_pred ------------------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCH
Q 011236 379 ------------------GKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDV 440 (490)
Q Consensus 379 ------------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 440 (490)
.-..+..||..+-.+|...+.+..|. |.. ..+-....-...++..|...|-+
T Consensus 1226 La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQ-----iCG-----L~iivhadeLeeli~~Yq~rGyF 1295 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQ-----ICG-----LNIIVHADELEELIEYYQDRGYF 1295 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHH-----hcC-----ceEEEehHhHHHHHHHHHhcCcH
Confidence 00013344555555554444433321 211 12233334456667777777777
Q ss_pred HHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC-CcHHHHH
Q 011236 441 EEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG-QEVDGLL 478 (490)
Q Consensus 441 ~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g-~~a~~~~ 478 (490)
++...+++........ ...|+-|.-.|.+-. ++-.+.+
T Consensus 1296 eElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl 1335 (1666)
T KOG0985|consen 1296 EELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHL 1335 (1666)
T ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777776665443333 556666666666665 4444433
No 97
>PLN02789 farnesyltranstransferase
Probab=98.93 E-value=3.7e-06 Score=75.15 Aligned_cols=231 Identities=11% Similarity=0.038 Sum_probs=109.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCCh--h
Q 011236 220 RSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAG-LKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNK--D 296 (490)
Q Consensus 220 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 296 (490)
.+..++|+.+++++. +.++ -+..+|+....++...| ++++++..++++....+ .+..+|+.-...+.+.|+. +
T Consensus 50 ~e~serAL~lt~~aI-~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np--knyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 50 DERSPRALDLTADVI-RLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP--KNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred CCCCHHHHHHHHHHH-HHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC--cchHHhHHHHHHHHHcCchhhH
Confidence 344445555555544 3222 22233333333344444 34555555555554443 3444444443333333332 3
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhc---CC----HHHHH
Q 011236 297 EMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQK---GM----IEKAD 369 (490)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~ 369 (490)
+++.+++.+....+ -+..+|+....++...|+++++.+.++++++.++. |...|+.....+.+. |. .++++
T Consensus 126 ~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 44555554544443 44455555555555555555555555555554322 333444433333322 11 23455
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHhhhcCcCCCc-chhhHHHHHHHHHcCC------
Q 011236 370 AVLKEIVKKGKTPTPNSWSIIAAGYADK----NNMEKAFECMKEALAVHEENKFWRP-KPSLVSSILDWLGDNR------ 438 (490)
Q Consensus 370 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g------ 438 (490)
....+++...+. |...|+.+...+... +...+|.+.+.+... ..| +...+..|+..|+...
T Consensus 204 ~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~-------~~~~s~~al~~l~d~~~~~~~~~~~~ 275 (320)
T PLN02789 204 KYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS-------KDSNHVFALSDLLDLLCEGLQPTAEF 275 (320)
T ss_pred HHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc-------ccCCcHHHHHHHHHHHHhhhccchhh
Confidence 555555555444 555666666655552 223445555555444 123 3345555555555421
Q ss_pred ------------CHHHHHHHHHHHHhcccc-hhhhHHHH
Q 011236 439 ------------DVEEVEAFVSSLKIKVQK-RNMYHALT 464 (490)
Q Consensus 439 ------------~~~~a~~~~~~~~~~~~~-~~~~~~l~ 464 (490)
..+.|.++++.+.+.+|. ..-|+...
T Consensus 276 ~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~~~ 314 (320)
T PLN02789 276 RDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAWRK 314 (320)
T ss_pred hhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 346677777777555555 44444333
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.93 E-value=1.3e-05 Score=68.96 Aligned_cols=312 Identities=11% Similarity=0.027 Sum_probs=198.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHccccCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchH-HHHHHHHHhcC
Q 011236 109 VQLDLIGKVRGLESAETYFNSLNDEDKV-DKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNY-NGIMCLYTNTG 186 (490)
Q Consensus 109 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~ 186 (490)
-+...+...|++.+|+.-|....+.+|+ -.++-.-...|...|+...|+.=|.+..+. +||...- -.-...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3445555556666666666666665553 223333344555566666666555555554 3332211 11122344555
Q ss_pred CcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011236 187 QHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYL 266 (490)
Q Consensus 187 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 266 (490)
.++.|..=|+..++.. |+..+ ...++.+.-..++ + ......+..+...|+...|+...
T Consensus 121 ele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e-------~----------~~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQE-------H----------WVLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred cHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHH-------H----------HHHHHHHHHHhcCCchhhHHHHH
Confidence 5555555555555432 21110 1111111101111 1 11223455667789999999999
Q ss_pred HHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 011236 267 KKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYC 346 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 346 (490)
..+.+..+ .|...|..-..+|...|++..|+.=++...... ..+..++.-+-..+-..|+.+.+....++-++ +.
T Consensus 179 ~~llEi~~--Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ld 253 (504)
T KOG0624|consen 179 THLLEIQP--WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LD 253 (504)
T ss_pred HHHHhcCc--chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cC
Confidence 99998766 799999999999999999999998887544433 36666777777778889999998888888776 45
Q ss_pred CCchhH----HHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHH
Q 011236 347 YDFRVP----NII---------LLGYSQKGMIEKADAVLKEIVKKGKTPTPN---SWSIIAAGYADKNNMEKAFECMKEA 410 (490)
Q Consensus 347 ~~~~~~----~~l---------~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~ 410 (490)
||...+ -.| +....+.+++.+++.-.+...+..+..... .+..+-.++...+++.+|++...+.
T Consensus 254 pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 554321 111 112345677888888888887775542233 3556667788889999999999999
Q ss_pred HHhhhcCcCCCcc-hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 411 LAVHEENKFWRPK-PSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 411 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
++ +.|+ ..++.--..+|.-...++.|..-|+.+.+.++.
T Consensus 334 L~-------~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 334 LD-------IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred Hh-------cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 88 5576 578888888888888999999999888877655
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.92 E-value=2.1e-06 Score=86.48 Aligned_cols=250 Identities=12% Similarity=0.087 Sum_probs=185.1
Q ss_pred cCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHcCCHHHHHH
Q 011236 188 HEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMD---WGTYSTVANYYIIAGLKEKAII 264 (490)
Q Consensus 188 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~ 264 (490)
.+.|.++-+..+.. +-....|-..|..+...++.++|.+++++....-++.-. ...|.++++.-...|.-+...+
T Consensus 1441 pesaeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred CcCHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 33444444444432 223456778888888899999999999988744444333 3456667777777788888888
Q ss_pred HHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011236 265 YLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSC 344 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 344 (490)
+|+++.+... ....|..|...|.+.+..++|.++++.|..... .....|...+..+.+.++-+.|..++.+..+.
T Consensus 1519 VFeRAcqycd---~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~- 1593 (1710)
T KOG1070|consen 1519 VFERACQYCD---AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS- 1593 (1710)
T ss_pred HHHHHHHhcc---hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-
Confidence 9988876443 245678888899999999999999998888776 67788899999999999999999999988875
Q ss_pred CCC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCc
Q 011236 345 YCY--DFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRP 422 (490)
Q Consensus 345 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p 422 (490)
++- ........+..-.+.|+.+++..+|+......++ -...|+..++.-.++|+.+.+..+|++++. .++.|
T Consensus 1594 lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~-----l~l~~ 1667 (1710)
T KOG1070|consen 1594 LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIE-----LKLSI 1667 (1710)
T ss_pred cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHh-----cCCCh
Confidence 222 2334555666677889999999999998887665 677899999999999999999999999988 66666
Q ss_pred ch--hhHHHHHHHHHcCCCHHHHHHHHHHH
Q 011236 423 KP--SLVSSILDWLGDNRDVEEVEAFVSSL 450 (490)
Q Consensus 423 ~~--~~~~~l~~~~~~~g~~~~a~~~~~~~ 450 (490)
-. ..|.-.+..-...|+-+.++.+=.++
T Consensus 1668 kkmKfffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1668 KKMKFFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred hHhHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 54 56667776666667766665554443
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4e-06 Score=76.35 Aligned_cols=373 Identities=14% Similarity=0.029 Sum_probs=226.4
Q ss_pred CCCCcccHHHhhccCCCCCCChHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 011236 32 KPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKIS-ELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQ 110 (490)
Q Consensus 32 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 110 (490)
+...|..=...+++.|++.+++..--... ...|+ ...|+....++.-.|++++|+..|.+-++.. +-+...+.-+
T Consensus 35 nhvlySnrsaa~a~~~~~~~al~da~k~~---~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl 110 (539)
T KOG0548|consen 35 NHVLYSNRSAAYASLGSYEKALKDATKTR---RLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGL 110 (539)
T ss_pred ccchhcchHHHHHHHhhHHHHHHHHHHHH---hcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhH
Confidence 44555566677888888777766433322 34444 4589999999999999999999999998887 4566666666
Q ss_pred HHHHHhhcCHHHHHHHH------HHccccC-----CChhHHHHHHHHHHhc----------CChhHHHHHHHHH-----H
Q 011236 111 LDLIGKVRGLESAETYF------NSLNDED-----KVDKLYGALLNCYVRE----------GLVDESLSLMQKM-----K 164 (490)
Q Consensus 111 ~~~~~~~~~~~~A~~~~------~~~~~~~-----p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m-----~ 164 (490)
..++.... .+.+.| ..+.... .....|..++..+-+. .++..|.-.+... .
T Consensus 111 ~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~ 187 (539)
T KOG0548|consen 111 AQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFY 187 (539)
T ss_pred HHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccccc
Confidence 66662110 011111 1111100 0112233333322110 1111121111110 0
Q ss_pred hcC-------CCCC----------------------cchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011236 165 EMG-------SFGS----------------------ALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICIN 215 (490)
Q Consensus 165 ~~~-------~~p~----------------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 215 (490)
..| ..|. ..-...+.++..+..+++.+.+-+....... -+..-++....
T Consensus 188 ~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA 265 (539)
T KOG0548|consen 188 ASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAA 265 (539)
T ss_pred ccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHH
Confidence 001 1110 0123567777778888899999998888754 35555666777
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHH
Q 011236 216 SYGARSELSSMENVLQEMESQSHISMDWGTYSTV-------ANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISH 288 (490)
Q Consensus 216 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 288 (490)
+|...|.+.+....-+... +.|- -...-|+.+ ..+|.+.++++.|+..|.+....... |+..
T Consensus 266 ~~~e~~~~~~c~~~c~~a~-E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-~~~l-------- 334 (539)
T KOG0548|consen 266 VYLERGKYAECIELCEKAV-EVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-PDLL-------- 334 (539)
T ss_pred HHHhccHHHHhhcchHHHH-HHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-HHHH--------
Confidence 8888888888777766665 4443 233334333 34666778899999999986554433 3322
Q ss_pred HHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHH
Q 011236 289 YASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKA 368 (490)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 368 (490)
.+....+++........-.++.. ..-...-...+.+.|++..|...|.++++.. +-|...|..-.-+|.+.|.+..|
T Consensus 335 -s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~a 411 (539)
T KOG0548|consen 335 -SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEA 411 (539)
T ss_pred -HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHH
Confidence 12233344444444333222211 1222333677888999999999999999884 55788899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHH
Q 011236 369 DAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLG 435 (490)
Q Consensus 369 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 435 (490)
++-.+..++.++. ....|..=..++....++++|++.|++.++ ..|+..-+..-+.-|.
T Consensus 412 L~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale-------~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 412 LKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALE-------LDPSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCchhHHHHHHHHHHH
Confidence 9998888887533 445566666677777889999999999988 3366544444443333
No 101
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.91 E-value=4.8e-05 Score=69.56 Aligned_cols=409 Identities=11% Similarity=0.058 Sum_probs=221.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHH
Q 011236 64 GQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGAL 143 (490)
Q Consensus 64 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l 143 (490)
..+-|+.+|+.||+-+... ..+++.+.++++...- +.++..+..-+..-.+..+++....+|.+....--+...|...
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 4577999999999988666 8999999999998875 6788889999999999999999999999988766677788877
Q ss_pred HHHHHh-cCChhH----HHHHHHHH-HhcCCCCC-cchHHHHHHHH---------HhcCCcCcHHHHHHHHHHCCCCCCH
Q 011236 144 LNCYVR-EGLVDE----SLSLMQKM-KEMGSFGS-ALNYNGIMCLY---------TNTGQHEKIPDVLLDMKENGVPPDN 207 (490)
Q Consensus 144 i~~~~~-~g~~~~----a~~~~~~m-~~~~~~p~-~~~~~~l~~~~---------~~~~~~~~a~~~~~~m~~~~~~p~~ 207 (490)
+.---+ .|+... ..+.|+-. .+.|+.+- ...|+.-+..+ ....+.+.+.++|+++....+.-=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 764433 233222 22333332 33353322 22344444432 2333455667778877764321111
Q ss_pred HHHH------HHHHHH-------hccCChHHHHHHHHHHHh-CCCCC------CCHH---------HHHHHHHHHHHcCC
Q 011236 208 FSYR------ICINSY-------GARSELSSMENVLQEMES-QSHIS------MDWG---------TYSTVANYYIIAGL 258 (490)
Q Consensus 208 ~~~~------~li~~~-------~~~g~~~~a~~~~~~~~~-~~~~~------~~~~---------~~~~li~~~~~~~~ 258 (490)
..|+ .=|+.. -+...+..|.++++++.. ..|+. |... .|-.+|.- -+.+-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNp 251 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCC
Confidence 1221 112111 123345566777666641 11211 1111 11112211 11110
Q ss_pred H---------HHHHHHHHHHhhhhccCCChhhH-----HHHHHHHHhcCC-------hhHHHHHHHHHHHhcCCCChhhH
Q 011236 259 K---------EKAIIYLKKCEDIVSKSKDALGY-----NHLISHYASLGN-------KDEMMKFWGLQKIKCKKQLNRDY 317 (490)
Q Consensus 259 ~---------~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 317 (490)
. ....-.+++........|+..-. ...-+.+...|+ .+++..+++.........+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11112222222211110221100 001112222333 34455555554444333333444
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 011236 318 ITMLGSLVKIG---ELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTP-TPNSWSIIAAG 393 (490)
Q Consensus 318 ~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~ 393 (490)
..+...=-..- ..+....+++++...-..--..+|..++..-.+..-+..|..+|.+..+.+..+ ++..+++++..
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 44333211111 245555566655543222223356667777777777777888888887776665 66667777775
Q ss_pred HhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcc--cc--hhhhHHHHHHHHh
Q 011236 394 YADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKV--QK--RNMYHALTEAHIR 469 (490)
Q Consensus 394 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~--~~~~~~l~~~~~~ 469 (490)
|| .++..-|.++|+--+. .+.-++.-....+..+...++-..+..+|++..... ++ ..+|..++..=..
T Consensus 412 ~c-skD~~~AfrIFeLGLk------kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLK------KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred Hh-cCChhHHHHHHHHHHH------hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 55 4566777777777766 222333444566666777777777888888777762 22 5777777777777
Q ss_pred cC--CcHHHHHHHHH
Q 011236 470 SG--QEVDGLLESMK 482 (490)
Q Consensus 470 ~g--~~a~~~~~~m~ 482 (490)
-| ..+.++-+++.
T Consensus 485 vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 485 VGDLNSILKLEKRRF 499 (656)
T ss_pred cccHHHHHHHHHHHH
Confidence 77 55555555443
No 102
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.6e-05 Score=77.78 Aligned_cols=301 Identities=10% Similarity=0.095 Sum_probs=196.7
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHH
Q 011236 135 KVDKLYGALLNCYVREGLVDESLSLMQKMKEMG--SFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRI 212 (490)
Q Consensus 135 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 212 (490)
.|+..-+..+.++...+-..+-+++++++.-.+ +.-+...-|.|+-...+ -+...+.+..+++-..+. |+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh------
Confidence 456667778899999999999999999986542 11122234555544444 455677777777765432 33
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhc
Q 011236 213 CINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASL 292 (490)
Q Consensus 213 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 292 (490)
+...+...+-+++|..+|++.. .+..+.+.||. ..+..|.|.++-++. ..+..|+.+..+-.+.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~------~n~~A~~VLie---~i~~ldRA~efAe~~-------n~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD------MNVSAIQVLIE---NIGSLDRAYEFAERC-------NEPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHHH---HhhhHHHHHHHHHhh-------CChHHHHHHHHHHHhc
Confidence 4456667788999999999885 44455555554 456788888887764 3456799999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 011236 293 GNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVL 372 (490)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 372 (490)
|...+|.+-|-+ ..|+..|..+++.+.+.|.+++-.+.+...++..-.|.+. +.||-+|++.++..+...++
T Consensus 1118 ~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 999999988752 2677889999999999999999999999888876666554 57999999999988766554
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh---------------hcCcCCCcchhhHHHHHHHHHcC
Q 011236 373 KEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVH---------------EENKFWRPKPSLVSSILDWLGDN 437 (490)
Q Consensus 373 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------~~~~~~~p~~~~~~~l~~~~~~~ 437 (490)
. -||..-...+.+-|...+.++.|.-+|....... .+...-..+..||..+.-+|...
T Consensus 1190 ~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1190 A-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDK 1262 (1666)
T ss_pred c-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhch
Confidence 1 2455555555555555555555544433221100 00000113346677776676665
Q ss_pred CCHHHHHHHHHHHHhcccc--hhhhHHHHHHHHhcC--CcHHHHHH
Q 011236 438 RDVEEVEAFVSSLKIKVQK--RNMYHALTEAHIRSG--QEVDGLLE 479 (490)
Q Consensus 438 g~~~~a~~~~~~~~~~~~~--~~~~~~l~~~~~~~g--~~a~~~~~ 479 (490)
+.+.-|. |...+.. .+-..-|+..|-..| ++-+.+++
T Consensus 1263 ~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1263 EEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred hhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 5544432 2222222 455566666666666 55555544
No 103
>PLN02789 farnesyltranstransferase
Probab=98.88 E-value=2.9e-06 Score=75.78 Aligned_cols=210 Identities=9% Similarity=-0.008 Sum_probs=160.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Q 011236 249 VANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLG-NKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKI 327 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 327 (490)
+-..+...+..++|+..+.++....+ .+..+|+.-..++...| ++++++..++++....+ .+..+|+.....+.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP--~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNP--GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHc
Confidence 44445556788999999999988776 46677777777777777 67999999998888776 5556677665556666
Q ss_pred CCH--HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---CC---
Q 011236 328 GEL--EEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADK---NN--- 399 (490)
Q Consensus 328 ~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---~~--- 399 (490)
|+. +++..+++++.+.. +-+..+|+.....+...|+++++++.++++++.++. |...|+.....+.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccc
Confidence 653 67888898888763 347778988888899999999999999999999877 788888877766554 22
Q ss_pred -HHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcC----CCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhc
Q 011236 400 -MEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDN----RDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRS 470 (490)
Q Consensus 400 -~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 470 (490)
.++.+++..+++. ..|+. ..|+.+...+... +...+|..++.+....++. ......|++.|+..
T Consensus 198 ~~e~el~y~~~aI~-------~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 198 MRDSELKYTIDAIL-------ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cHHHHHHHHHHHHH-------hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 3567888888887 33444 6777777777663 4456788888888887777 88899999999863
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=2.7e-06 Score=71.55 Aligned_cols=336 Identities=12% Similarity=0.054 Sum_probs=212.9
Q ss_pred CCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHH
Q 011236 99 GLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNG 177 (490)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 177 (490)
|.....-.+...+..+.+..++++|++++..-.+..| +....+.|..+|....++..|...++++...- |...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrl 82 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRL 82 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHH
Confidence 3333444567777778899999999999998888887 67778888899999999999999999987763 34333322
Q ss_pred -HHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 011236 178 -IMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICIN--SYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYI 254 (490)
Q Consensus 178 -l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (490)
-...+-+.+.+..|+++...|... |+...-..-+. .....+++..+..++++.. .. -+..+.+.......
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp-~e---n~Ad~~in~gClly 155 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP-SE---NEADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhcc-CC---Cccchhccchheee
Confidence 233455778899999999888653 33322222222 2345788888888888775 22 23344444556677
Q ss_pred HcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCC--C-----------Chh------
Q 011236 255 IAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKK--Q-----------LNR------ 315 (490)
Q Consensus 255 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~-----------~~~------ 315 (490)
+.|+++.|.+-|+...+-+.. .....|+..+. +.+.|+.+.|+++..+++..+.+ | |..
T Consensus 156 kegqyEaAvqkFqaAlqvsGy-qpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGY-QPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCC-CchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 899999999999998887765 56677776654 55778999999999988888762 1 111
Q ss_pred --hHHHHHHH-------HHhcCCHHHHHHHHHHHHhcC-CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 011236 316 --DYITMLGS-------LVKIGELEEAEKMLEEWELSC-YCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPN 385 (490)
Q Consensus 316 --~~~~l~~~-------~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 385 (490)
.-+.++.+ +.+.|+++.|.+.+..|.... ...|+.|...+.-.- ..+++-+..+-+.-+.+.++- ...
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~E 311 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPE 311 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChH
Confidence 12233333 345677777777776664321 233555544332221 134455555555555555543 456
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCC-CcchhhHHHHHHHHH-cCCCHHHHHHHHHHHHhc
Q 011236 386 SWSIIAAGYADKNNMEKAFECMKEALAVHEENKFW-RPKPSLVSSILDWLG-DNRDVEEVEAFVSSLKIK 453 (490)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~ 453 (490)
||..++-.||+..-++.|..++.+-.. ... -.+...|+ ++.++. ..-..++|.+-++.+.+.
T Consensus 312 TFANlLllyCKNeyf~lAADvLAEn~~-----lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~ 375 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAENAH-----LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGM 375 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhhCcc-----hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 777777778888777777777765322 111 12223333 333333 345566666666655443
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.85 E-value=1e-06 Score=76.36 Aligned_cols=192 Identities=11% Similarity=-0.048 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCCh--hhH
Q 011236 241 MDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKD-ALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLN--RDY 317 (490)
Q Consensus 241 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 317 (490)
.....+..+...+...|++++|...|+++....+..+. ..++..+..++...|++++|...++......+.... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45666777888888999999999999988776553121 246677888888899999999999988877652222 134
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011236 318 ITMLGSLVKI--------GELEEAEKMLEEWELSCYCYDF-RVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWS 388 (490)
Q Consensus 318 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 388 (490)
..+..++... |+.++|.+.++.+.+. .|+. ..+..+... +..... . .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~~------~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRNR------L--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHHH------H--------HHHHH
Confidence 4455555543 6677777777777764 2332 122111111 000000 0 00122
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 011236 389 IIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQ 455 (490)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 455 (490)
.+...+.+.|++++|...++++++..| +-......+..+..++.+.|++++|..+++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYP---DTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCC---CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455678888999999999998887332 1112346778888888899999999988888877655
No 106
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.85 E-value=5.7e-06 Score=80.71 Aligned_cols=368 Identities=12% Similarity=-0.012 Sum_probs=223.1
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHH
Q 011236 84 RFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQK 162 (490)
Q Consensus 84 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 162 (490)
+...|+..|-+..+... .-...|..+...|+...+...|.+.|+...+.++ +...+......|++..+++.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 35666666666666653 3456788888888888899999999999998886 678899999999999999999988443
Q ss_pred HHhcCCC-CCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC
Q 011236 163 MKEMGSF-GSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISM 241 (490)
Q Consensus 163 m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 241 (490)
..+.... .-...|....-.|.+.++...+..-|+...+..+ -|...|..+..+|..+|.+..|.++|.+.. ..++ .
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs-~LrP-~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKAS-LLRP-L 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhH-hcCc-H
Confidence 3332110 0122233455567788889999999988887544 377789999999999999999999998887 4443 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHH-------Hhc
Q 011236 242 DWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKS-----KDALGYNHLISHYASLGNKDEMMKFWGLQK-------IKC 309 (490)
Q Consensus 242 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~ 309 (490)
+...---..-.-+..|.+.+|...+..+....... .-..++..+...+...|-...+.++++.-+ .+.
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 22222223445677888888888887765432210 111223223333333333333333333222 222
Q ss_pred CCCChhhHHHHHHHHHhcCCHH------HHHHHH-HHHHhcC--------------------CCCCchhHHHHHHHHHh-
Q 011236 310 KKQLNRDYITMLGSLVKIGELE------EAEKML-EEWELSC--------------------YCYDFRVPNIILLGYSQ- 361 (490)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~~~~~------~a~~~~-~~~~~~~--------------------~~~~~~~~~~l~~~~~~- 361 (490)
...+...|..+.++|.---..+ ....++ .+....+ ...+..+|..|+..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 1122222322222221100000 000011 1111111 11223444445444433
Q ss_pred ---c----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHH
Q 011236 362 ---K----GMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWL 434 (490)
Q Consensus 362 ---~----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 434 (490)
. .+...|...+.+.++..-. +..+|+.|.-. ...|++.-|...|-+.+.. .+-+..+|..+.-.+
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~s------ep~~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFS------EPTCHCQWLNLGVLV 860 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhc------cccchhheeccceeE
Confidence 1 2334677777777765433 66777777665 6668888888888777662 223446788888888
Q ss_pred HcCCCHHHHHHHHHHHHhcccc-hhhhHHH
Q 011236 435 GDNRDVEEVEAFVSSLKIKVQK-RNMYHAL 463 (490)
Q Consensus 435 ~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l 463 (490)
....+++.|...|.+.+...|. ...|-..
T Consensus 861 l~n~d~E~A~~af~~~qSLdP~nl~~WlG~ 890 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQSLDPLNLVQWLGE 890 (1238)
T ss_pred EecccHHHhhHHHHhhhhcCchhhHHHHHH
Confidence 8899999999999999888887 5445433
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.84 E-value=6e-07 Score=90.15 Aligned_cols=218 Identities=13% Similarity=0.067 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHH
Q 011236 245 TYSTVANYYIIAGLKEKAIIYLKKCEDIVSKS---KDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITML 321 (490)
Q Consensus 245 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 321 (490)
.|-..|......++.++|.+++++........ .-...|.++++.-..-|.-+...++|+++.+... .-..|..|.
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYTVHLKLL 1537 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHHHHHHHH
Confidence 33334444445555555555555544332110 0112344444444444444445555554433321 123344555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCCH
Q 011236 322 GSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKT-PTPNSWSIIAAGYADKNNM 400 (490)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~ 400 (490)
..|.+.+..++|.++++.|.+. +.-...+|...+..+.+.++-+.|..++.+..+.=++ -......-.++.-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 5555555555555555555544 3333444555555555555555555555554443111 0122233333334445555
Q ss_pred HHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc----hhhhHHHHHHHHhcC
Q 011236 401 EKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK----RNMYHALTEAHIRSG 471 (490)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~l~~~~~~~g 471 (490)
+++..+|+..+.-+ +-....|+.+++.-.+.|+.+.++.+|+++...+.. -..|.-++..=...|
T Consensus 1617 eRGRtlfEgll~ay------PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAY------PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred hhhHHHHHHHHhhC------ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 55555555554411 112244555555555555555555555555554433 333444444444444
No 108
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.83 E-value=6.8e-06 Score=77.60 Aligned_cols=195 Identities=15% Similarity=0.153 Sum_probs=139.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhc
Q 011236 213 CINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASL 292 (490)
Q Consensus 213 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 292 (490)
.+.+......|.+|+.+++.++ +.+. ...-|..+.+.|...|+++.|.++|.+ +. .++-.|.+|.+.
T Consensus 738 aieaai~akew~kai~ildniq-dqk~--~s~yy~~iadhyan~~dfe~ae~lf~e----~~------~~~dai~my~k~ 804 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQ-DQKT--ASGYYGEIADHYANKGDFEIAEELFTE----AD------LFKDAIDMYGKA 804 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhh-hhcc--ccccchHHHHHhccchhHHHHHHHHHh----cc------hhHHHHHHHhcc
Confidence 3455667788999999999887 4433 334567788899999999999999876 22 266678889999
Q ss_pred CChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 011236 293 GNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVL 372 (490)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 372 (490)
|+|..|.++-.+. .++......|.+-..-+-+.|++.+|++++-.+- .|+ .-|..|-+.|..+..+++.
T Consensus 805 ~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 805 GKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred ccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHH
Confidence 9999998876533 3334455566666677778899999888876542 233 3577888999988888877
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHH
Q 011236 373 KEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVS 448 (490)
Q Consensus 373 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 448 (490)
.+--.. .-..|...+..-|-..|+...|...|-++-+ |.+.++.|...+-|++|-++-+
T Consensus 874 ~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 874 EKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------------HHHHHHHhhhhhhHHHHHHHHh
Confidence 654221 1234667777888888999999888877655 5566667777777777766543
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=3.2e-07 Score=86.26 Aligned_cols=219 Identities=11% Similarity=0.104 Sum_probs=171.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhH
Q 011236 238 HISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDY 317 (490)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 317 (490)
+.+|-+..-..+...+...|-...|..+|+++. .|...+.+|+..|+..+|..+.....+ ..|++..|
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~ly 460 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLY 460 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhH
Confidence 345666777778889999999999999998743 366788899999999999998886665 34888999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 011236 318 ITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADK 397 (490)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 397 (490)
..+.+......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.++- -..+|-.+..+..+.
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQL 532 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHH
Confidence 99988877777788888888765432 1122222234478889999988887776543 567888888888888
Q ss_pred CCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--Cc
Q 011236 398 NNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QE 473 (490)
Q Consensus 398 ~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~ 473 (490)
++++.|.+.|...+. ..|+. ..|+.+-.+|.+.|+-.+|...+.+..+.+.. ..+|...+-...+.| ++
T Consensus 533 ek~q~av~aF~rcvt-------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVT-------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred hhhHHHHHHHHHHhh-------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHH
Confidence 999999999988887 45666 78899999999999999999999988887765 788888888888888 88
Q ss_pred HHHHHHHHHh
Q 011236 474 VDGLLESMKA 483 (490)
Q Consensus 474 a~~~~~~m~~ 483 (490)
|++.+.+|..
T Consensus 606 a~~A~~rll~ 615 (777)
T KOG1128|consen 606 AIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 110
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.80 E-value=2.7e-05 Score=76.25 Aligned_cols=161 Identities=11% Similarity=-0.010 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-Chh--HHHHHHH
Q 011236 69 ELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDK--LYGALLN 145 (490)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~--~~~~li~ 145 (490)
...|..|...|+...+...|.+.|++.-+.+ +.+..........|+...+++.|..+.-...+..| -.. .|-.+.-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 3467788888888888888999999988876 45677778888999999999999988554444443 122 2333445
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHH--HHHHHhccCCh
Q 011236 146 CYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRI--CINSYGARSEL 223 (490)
Q Consensus 146 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~~ 223 (490)
.|.+.++...|+.-|+...+..+. |...|..++.+|...|.+..|.++|.+... +.|+.. |.. ..-..+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~-y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK-YGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH-HHHHHHHHHHHHhhhH
Confidence 577889999999999999888766 888999999999999999999999988876 345432 222 22234567888
Q ss_pred HHHHHHHHHHH
Q 011236 224 SSMENVLQEME 234 (490)
Q Consensus 224 ~~a~~~~~~~~ 234 (490)
.+|...+....
T Consensus 647 keald~l~~ii 657 (1238)
T KOG1127|consen 647 KEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHH
Confidence 88887777664
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=4.5e-07 Score=85.25 Aligned_cols=238 Identities=15% Similarity=0.098 Sum_probs=185.1
Q ss_pred CCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHH
Q 011236 101 AFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMC 180 (490)
Q Consensus 101 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 180 (490)
+|-......+...+...|-...|..+|+++. .|.-+|.+|+..|+..+|..+...-.++ +||...|..+.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 5556666777888899999999999998753 5888899999999999999998888773 678889999988
Q ss_pred HHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHH
Q 011236 181 LYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKE 260 (490)
Q Consensus 181 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 260 (490)
......-+++|.++++....+ .-..+.....+.+++.++.+.|+.-. +.+. ....+|-.+..+..+.++++
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl-~~np-lq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL-EINP-LQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh-hcCc-cchhHHHhccHHHHHHhhhH
Confidence 887777788888888775432 22223333445789999999998876 5554 56677877888889999999
Q ss_pred HHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011236 261 KAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEW 340 (490)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 340 (490)
.|.+.|.......+ .+...||.+-.+|.+.++-.+|...+.+..+-. ..+...|...+....+.|.+++|.+.+.++
T Consensus 537 ~av~aF~rcvtL~P--d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEP--DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhhcCC--CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999999887555 577899999999999999999999999888776 466677777888888999999999999887
Q ss_pred HhcCC-CCCchhHHHHHHHH
Q 011236 341 ELSCY-CYDFRVPNIILLGY 359 (490)
Q Consensus 341 ~~~~~-~~~~~~~~~l~~~~ 359 (490)
..... ..|..+...++...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHhhhhcccchhhHHHHHHH
Confidence 65321 11444444444443
No 112
>PF12854 PPR_1: PPR repeat
Probab=98.78 E-value=9.6e-09 Score=57.36 Aligned_cols=32 Identities=25% Similarity=0.495 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 011236 202 GVPPDNFSYRICINSYGARSELSSMENVLQEM 233 (490)
Q Consensus 202 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 233 (490)
|+.||..||++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 113
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=3e-05 Score=74.34 Aligned_cols=176 Identities=16% Similarity=0.175 Sum_probs=96.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHh--
Q 011236 249 VANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVK-- 326 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 326 (490)
+++..|-.|+.++|-++-++ . .|....-.+.+.|-..|++.+|..+|.+... |...|+.|-.
T Consensus 944 ~VrI~C~qGk~~kAa~iA~e------s-gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEE------S-GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKEND 1007 (1416)
T ss_pred heeeEeeccCchHHHHHHHh------c-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcC
Confidence 33344444444444444333 1 4555666777777777777777777764432 2223332211
Q ss_pred -------------cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHH--------HHHH--cCCCCC
Q 011236 327 -------------IGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLK--------EIVK--KGKTPT 383 (490)
Q Consensus 327 -------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~m~~--~~~~p~ 383 (490)
..+.-.|-++|++. |. -+..-+..|.+.|.+.+|+++-- +++. .....|
T Consensus 1008 ~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sD 1079 (1416)
T KOG3617|consen 1008 MKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSD 1079 (1416)
T ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCC
Confidence 11222333333332 11 11234456888888888876532 1222 233446
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhh----------------------hcCcCCCcch----hhHHHHHHHHHcC
Q 011236 384 PNSWSIIAAGYADKNNMEKAFECMKEALAVH----------------------EENKFWRPKP----SLVSSILDWLGDN 437 (490)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------~~~~~~~p~~----~~~~~l~~~~~~~ 437 (490)
+...+.-.+.|+...++++|..++..+.+.. |.+.+. |+. .....+...|.++
T Consensus 1080 p~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~-~~e~~R~~vLeqvae~c~qQ 1158 (1416)
T KOG3617|consen 1080 PKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDM-PNEQERKQVLEQVAELCLQQ 1158 (1416)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCC-ccHHHHHHHHHHHHHHHHhc
Confidence 7778888888888888998888775554411 222222 332 3456667788888
Q ss_pred CCHHHHHHHHHH
Q 011236 438 RDVEEVEAFVSS 449 (490)
Q Consensus 438 g~~~~a~~~~~~ 449 (490)
|.+..|.+-|.+
T Consensus 1159 G~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1159 GAYHAATKKFTQ 1170 (1416)
T ss_pred cchHHHHHHHhh
Confidence 888877665543
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.76 E-value=1e-08 Score=57.27 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=17.4
Q ss_pred CCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011236 344 CYCYDFRVPNIILLGYSQKGMIEKADAVLKEI 375 (490)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 375 (490)
|+.||..+|++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.74 E-value=2.6e-06 Score=70.87 Aligned_cols=118 Identities=8% Similarity=0.010 Sum_probs=81.4
Q ss_pred cCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHH-HHhcCC--HHHH
Q 011236 292 LGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLG-YSQKGM--IEKA 368 (490)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~A 368 (490)
.++.+++...++......+ .+...|..+...|...|++++|...+++..+.. +.+...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4555666666666666655 666777777777777777777777777777753 2255566666665 355565 4777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 369 DAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 369 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
.+++++..+.++. +...+..+...+.+.|++++|+..|+++++
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777655 666777777777777777777777777776
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=2.1e-06 Score=74.47 Aligned_cols=162 Identities=12% Similarity=0.118 Sum_probs=96.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 011236 316 DYITMLGSLVKIGELEEAEKMLEEWELSCYCYDF---RVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTP--NSWSII 390 (490)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l 390 (490)
.+..+...+...|++++|...++++..... .+. ..+..+..+|.+.|++++|...++++.+..+.... .++..+
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 344444455555555555555555544311 111 23344445555555555555555555554322111 123333
Q ss_pred HHHHhcc--------CCHHHHHHHHHHHHHhhhcCcCCCcchh-h-----------------HHHHHHHHHcCCCHHHHH
Q 011236 391 AAGYADK--------NNMEKAFECMKEALAVHEENKFWRPKPS-L-----------------VSSILDWLGDNRDVEEVE 444 (490)
Q Consensus 391 ~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~-----------------~~~l~~~~~~~g~~~~a~ 444 (490)
..++... |++++|.+.+++++..+ |+.. . ...+...+.+.|++++|.
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-------PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 3333332 56677777777776633 3221 1 124556778899999999
Q ss_pred HHHHHHHhcccc----hhhhHHHHHHHHhcC--CcHHHHHHHHHhCC
Q 011236 445 AFVSSLKIKVQK----RNMYHALTEAHIRSG--QEVDGLLESMKADD 485 (490)
Q Consensus 445 ~~~~~~~~~~~~----~~~~~~l~~~~~~~g--~~a~~~~~~m~~~~ 485 (490)
..++.+.+..|. ...+..++.++.+.| ++|..+++.+..+.
T Consensus 187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 187 NRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999988664 688999999999999 89999988887653
No 117
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=2.1e-06 Score=81.92 Aligned_cols=260 Identities=15% Similarity=0.140 Sum_probs=141.3
Q ss_pred ChhhHHHHHH--HHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhc-C--------CCCC
Q 011236 103 SVHDHAVQLD--LIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEM-G--------SFGS 171 (490)
Q Consensus 103 ~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~--------~~p~ 171 (490)
++.+-..+++ .|...|+.+.|.+-.+.+. +..+|..+.+.|.+.++.+-|.-.+-.|... | -.|+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 4444444433 4556677777766665554 3456777777777777777777666666432 1 1111
Q ss_pred cchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 011236 172 ALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVAN 251 (490)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 251 (490)
.+-..+.-.....|..++|..+|++..+. ..|=..|-..|.+++|.++-+.-. +- .-..||.....
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~D-Ri---HLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKD-RI---HLRNTYYNYAK 866 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcc-ce---ehhhhHHHHHH
Confidence 22222222233455566666666555442 123334445566666655543322 11 22234444555
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH
Q 011236 252 YYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELE 331 (490)
Q Consensus 252 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 331 (490)
-+-..++.+.|++.|++. +...++.. +.+ ..++.....+.++ ..|...|.--...+...|+.+
T Consensus 867 ~Lear~Di~~AleyyEK~--------~~hafev~-rmL--~e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKA--------GVHAFEVF-RML--KEYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHhhccHHHHHHHHHhc--------CChHHHHH-HHH--HhChHHHHHHHHh------ccchHHHHHHHHHHhcccchH
Confidence 555556666666666552 11111110 000 0111111111111 234455666666667788888
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011236 332 EAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEAL 411 (490)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (490)
.|..+|..... |-++++..|-.|+.++|-++-++-- |......|.+.|-..|++.+|..+|.++.
T Consensus 930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888877654 3456667777888888877765422 55566677888888888888888887765
Q ss_pred H
Q 011236 412 A 412 (490)
Q Consensus 412 ~ 412 (490)
.
T Consensus 995 a 995 (1416)
T KOG3617|consen 995 A 995 (1416)
T ss_pred H
Confidence 4
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.71 E-value=1.1e-05 Score=80.64 Aligned_cols=238 Identities=12% Similarity=0.058 Sum_probs=117.2
Q ss_pred CChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHH
Q 011236 102 FSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKV-DKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMC 180 (490)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 180 (490)
.....+..++..+...+++++|.++.+......|+ ...|-.+...+.+.++.+.+..+ .++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 34444555555555555555555555554444443 22333333344444443333322 1222
Q ss_pred HHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHH
Q 011236 181 LYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKE 260 (490)
Q Consensus 181 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 260 (490)
......++..+..++..|...+ -+...+..+..+|-+.|+.+++..+++++. +.++ -+..+.|.+...|... +++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L-~~D~-~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLV-KADR-DNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCc-ccHHHHHHHHHHHHHh-hHH
Confidence 2222333333333333333321 233355556666666666666666666666 5553 5556666666666666 666
Q ss_pred HHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011236 261 KAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEW 340 (490)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 340 (490)
+|.+++.+.... +...+++..+.++|.++....+ .+.+.-.++.+.+
T Consensus 167 KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~-----------------~d~d~f~~i~~ki 213 (906)
T PRK14720 167 KAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNS-----------------DDFDFFLRIERKV 213 (906)
T ss_pred HHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCc-----------------ccchHHHHHHHHH
Confidence 666665554332 3333444455555554443322 1222223333333
Q ss_pred Hhc-CCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 011236 341 ELS-CYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYA 395 (490)
Q Consensus 341 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 395 (490)
..+ |..--..++-.+-..|...++++++..+++.+.+.... |.....-++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 322 22222334445556677777777888888887776655 5566666666665
No 119
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.70 E-value=4.7e-05 Score=72.20 Aligned_cols=149 Identities=13% Similarity=0.097 Sum_probs=81.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCH
Q 011236 286 ISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMI 365 (490)
Q Consensus 286 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 365 (490)
+.+......|.+|+.+++.+.... .-..-|..+.+.|...|+++.|+++|.+.- .++--|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 344445666777777776554432 233446666777777777777777776531 234556777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH-------------H------HHHHhhhcCcCCCcch--
Q 011236 366 EKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECM-------------K------EALAVHEENKFWRPKP-- 424 (490)
Q Consensus 366 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~-------------~------~~~~~~~~~~~~~p~~-- 424 (490)
+.|.++-.+. .|+......|-.-..-+-++|++.+|.+++ + .|+++. ....|+.
T Consensus 808 ~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv---~k~h~d~l~ 882 (1636)
T KOG3616|consen 808 EDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLV---EKHHGDHLH 882 (1636)
T ss_pred HHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHH---HHhChhhhh
Confidence 7777665433 333334444544444444455444444433 1 122111 1122333
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHH
Q 011236 425 SLVSSILDWLGDNRDVEEVEAFVSSL 450 (490)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 450 (490)
.|...+..-+...|+...|+.-|-+.
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhh
Confidence 45566666677777777777655443
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.70 E-value=6.7e-06 Score=68.23 Aligned_cols=159 Identities=12% Similarity=0.047 Sum_probs=106.1
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 011236 176 NGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYII 255 (490)
Q Consensus 176 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (490)
..+-..+...|+-+....+....... .+-|....+.++....+.|++..|...|++.. .... +|+.+|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~l~p-~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-RLAP-TDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHh-ccCC-CChhhhhHHHHHHHH
Confidence 44445555666666666666554332 22344455557777777777777777777776 5555 777777777777777
Q ss_pred cCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011236 256 AGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEK 335 (490)
Q Consensus 256 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 335 (490)
.|+++.|..-|.+..+..+ .+....+.+...+.-.|+.+.|..++........ -+...-..+..+....|++++|+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~--~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 147 LGRFDEARRAYRQALELAP--NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred ccChhHHHHHHHHHHHhcc--CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHh
Confidence 7777777777777776555 4566677777777777777777777775555443 456666667777777777777777
Q ss_pred HHHHH
Q 011236 336 MLEEW 340 (490)
Q Consensus 336 ~~~~~ 340 (490)
+...-
T Consensus 224 i~~~e 228 (257)
T COG5010 224 IAVQE 228 (257)
T ss_pred hcccc
Confidence 65543
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.69 E-value=1.6e-06 Score=68.12 Aligned_cols=107 Identities=11% Similarity=-0.074 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCc-chhhHHHH
Q 011236 352 PNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRP-KPSLVSSI 430 (490)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l 430 (490)
+..+...+...|++++|...|+......+. +...|..+..++...|++++|...|+++.. ..| +...+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-------l~p~~~~a~~~l 98 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALM-------LDASHPEPVYQT 98 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------cCCCCcHHHHHH
Confidence 334455556666666666666666655433 555666666666666666666666666665 223 33555566
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHH
Q 011236 431 LDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEA 466 (490)
Q Consensus 431 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~ 466 (490)
..++...|+.++|...|+...+..|. +..|.....+
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 66666666666666666666666665 5555444433
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=1.6e-05 Score=65.98 Aligned_cols=115 Identities=22% Similarity=0.171 Sum_probs=53.2
Q ss_pred HHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh----cC
Q 011236 288 HYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQ----KG 363 (490)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 363 (490)
.|++.|++++|++.... + .+......=+..+.+..+.+-|.+.+++|.+. . +..+.+.|..++.+ .+
T Consensus 117 i~~~~~~~deAl~~~~~----~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--d-ed~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHL----G--ENLEAAALNVQILLKMHRFDLAEKELKKMQQI--D-EDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred HhhcCCChHHHHHHHhc----c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--c-hHHHHHHHHHHHHHHhccch
Confidence 34555555555555442 0 11122222233334445555555555555442 1 22333444444432 23
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 364 MIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 364 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
.+.+|.-+|++|-++ ..|+..+.+-...++...|++++|..++++++.
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 455555555555443 234555555555555555555555555555555
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.69 E-value=0.00027 Score=64.88 Aligned_cols=414 Identities=10% Similarity=0.049 Sum_probs=255.0
Q ss_pred hhccCCCCcccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 011236 28 YRAVKPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDH 107 (490)
Q Consensus 28 ~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 107 (490)
..|.+..+|..|++.+-.. +-+.+....+++... .+.++..|..-|.......+++....+|...+..- .+.+.+
T Consensus 15 ~nP~di~sw~~lire~qt~--~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW 89 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ--PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLW 89 (656)
T ss_pred cCCccHHHHHHHHHHHccC--CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHH
Confidence 3455778899999988765 555566678887643 45567788999999999999999999999988775 467777
Q ss_pred HHHHHHHHhh-cCHHH----HHHHHHHccc-cC--C-ChhHHHHHHHH---------HHhcCChhHHHHHHHHHHhcCCC
Q 011236 108 AVQLDLIGKV-RGLES----AETYFNSLND-ED--K-VDKLYGALLNC---------YVREGLVDESLSLMQKMKEMGSF 169 (490)
Q Consensus 108 ~~l~~~~~~~-~~~~~----A~~~~~~~~~-~~--p-~~~~~~~li~~---------~~~~g~~~~a~~~~~~m~~~~~~ 169 (490)
...+..-.+. |+... ..+.|+-... .+ + +...|+..+.. |....+.+...++++++....+.
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 7777655432 33322 2222332222 22 2 34456655543 33444566777788887765222
Q ss_pred C------CcchHHHHHHHH-------HhcCCcCcHHHHHHHHHH--CCCCCCHHH---------------HHHHHHHHhc
Q 011236 170 G------SALNYNGIMCLY-------TNTGQHEKIPDVLLDMKE--NGVPPDNFS---------------YRICINSYGA 219 (490)
Q Consensus 170 p------~~~~~~~l~~~~-------~~~~~~~~a~~~~~~m~~--~~~~p~~~~---------------~~~li~~~~~ 219 (490)
- |-.+|..=|+-. -+...+..|.+++++... +|+.....+ |-.+|.-- +
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-k 248 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-K 248 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-h
Confidence 1 111221111111 123346677777777643 343222211 22222211 1
Q ss_pred cCChH---------HHHHHHHHHHhCCCCCCCHHH-HHH----HHHHHHHcCC-------HHHHHHHHHHHhhhhccCCC
Q 011236 220 RSELS---------SMENVLQEMESQSHISMDWGT-YST----VANYYIIAGL-------KEKAIIYLKKCEDIVSKSKD 278 (490)
Q Consensus 220 ~g~~~---------~a~~~~~~~~~~~~~~~~~~~-~~~----li~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~ 278 (490)
.+-+. ...-++++...-.+..|++.. |.. .-+.+...|+ -+++..+++........ .+
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~-~~ 327 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK-EN 327 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH-HH
Confidence 11111 111222322212222233211 111 1122333343 45666777766554443 44
Q ss_pred hhhHHHHHHHHHhc---CChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CchhHHH
Q 011236 279 ALGYNHLISHYASL---GNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCY-DFRVPNI 354 (490)
Q Consensus 279 ~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 354 (490)
..+|..+...--.. +..+.....+++...........+|...++.-.+..-+..|..+|.+..+.+..+ ++.++++
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 44554444322211 2356667777777766555556788999999899999999999999999988776 7788889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch--hhHHHHHH
Q 011236 355 ILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP--SLVSSILD 432 (490)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~ 432 (490)
++.-||. ++.+-|.++|+-=.+.- .-++.--...+..+...++-..+..+|++.+. .++.|+. ..|..++.
T Consensus 408 ~mEy~cs-kD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~-----s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 408 LMEYYCS-KDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLT-----SVLSADKSKEIWDRMLE 480 (656)
T ss_pred HHHHHhc-CChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHh-----ccCChhhhHHHHHHHHH
Confidence 9988885 67889999998765542 11334445677888889999999999999998 5666665 79999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhccc
Q 011236 433 WLGDNRDVEEVEAFVSSLKIKVQ 455 (490)
Q Consensus 433 ~~~~~g~~~~a~~~~~~~~~~~~ 455 (490)
.-+.-|+...+.++-+++....+
T Consensus 481 yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 481 YESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHhcccHHHHHHHHHHHHHhcc
Confidence 99999999999999888776655
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.68 E-value=7.6e-06 Score=67.90 Aligned_cols=158 Identities=13% Similarity=0.098 Sum_probs=95.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhc
Q 011236 283 NHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQK 362 (490)
Q Consensus 283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 362 (490)
..+-..+...|+-+....+........+ .+.......+....+.|++..|...+.+.... -++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 4455555556666666666554333322 34444555666666677777777777666654 345666677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHH
Q 011236 363 GMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEE 442 (490)
Q Consensus 363 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 442 (490)
|+++.|..-|.+..+..+. +...++.+...+.-.|+.+.|..++..+.. .-.-|...-..+..+....|++++
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l------~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYL------SPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHh------CCCCchHHHHHHHHHHhhcCChHH
Confidence 7777777777666665443 455566666666666777777777666655 112244555566666666677777
Q ss_pred HHHHHHH
Q 011236 443 VEAFVSS 449 (490)
Q Consensus 443 a~~~~~~ 449 (490)
|+++...
T Consensus 221 A~~i~~~ 227 (257)
T COG5010 221 AEDIAVQ 227 (257)
T ss_pred HHhhccc
Confidence 7665543
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.63 E-value=7.2e-06 Score=80.93 Aligned_cols=131 Identities=15% Similarity=0.083 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHH
Q 011236 68 SELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNC 146 (490)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~ 146 (490)
+...+..|.....+.|++++|..+++...+.. |-+......+...+.+.+++++|+..+++....+| +......+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 34444444444445555555555555544443 23334444444444455555555555555444444 23334444444
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHH
Q 011236 147 YVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKE 200 (490)
Q Consensus 147 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 200 (490)
+.+.|++++|..+|+++...+.. +..++..+..++...|+.++|...|+...+
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555554442221 244444444444445555555555544443
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.63 E-value=2.5e-05 Score=77.23 Aligned_cols=134 Identities=11% Similarity=-0.041 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHH
Q 011236 241 MDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITM 320 (490)
Q Consensus 241 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (490)
.+...+..|.......|.+++|..+++...+..+ .+......+...+.+.+++++|+..+++.....+ -+......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P--d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP--DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 4566666677777777777777777777666554 4556666666777777777777777776666554 445556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011236 321 LGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKK 378 (490)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 378 (490)
..++.+.|++++|..+|+++... .+-+..++..+...+...|+.++|...|++..+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666777777777777777663 2223556666666677777777777777776664
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=5.2e-05 Score=63.06 Aligned_cols=245 Identities=13% Similarity=0.026 Sum_probs=135.8
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH-
Q 011236 149 REGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSME- 227 (490)
Q Consensus 149 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~- 227 (490)
-.|++..++..-....... -++..-..+-++|...|.+..... ++... -.|.......+......-++.+.-.
T Consensus 20 Y~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchhHHHHH
Confidence 3455555554443332221 233334444555666665544332 22221 1334444444444444444444333
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011236 228 NVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKI 307 (490)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (490)
++.+.+. ......+......-...|++.|++++|++..+.. .+......=+..+.+..+.+-|...++.|.+
T Consensus 94 ~l~E~~a-~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 94 SLYELVA-DSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHH-hhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334443 4444334333333445677777888877777651 2333333334445566677777777777665
Q ss_pred hcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011236 308 KCKKQLNRDYITMLGSLVK----IGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPT 383 (490)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 383 (490)
. .+..|.+.|..++.+ .+.+..|.-+|++|-+. .+|+..+.+....++...|++++|..+++....+... +
T Consensus 166 i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-d 240 (299)
T KOG3081|consen 166 I---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-D 240 (299)
T ss_pred c---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-C
Confidence 4 344555555555543 34577788888888765 6777777777777778888888888888888877655 6
Q ss_pred HHHHHHHHHHHhccCCHHH-HHHHHHHHHH
Q 011236 384 PNSWSIIAAGYADKNNMEK-AFECMKEALA 412 (490)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 412 (490)
+.+...++.+-...|...+ ..+.+...+.
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 6666666655555554433 3455555544
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.61 E-value=8.5e-06 Score=67.78 Aligned_cols=151 Identities=8% Similarity=-0.041 Sum_probs=116.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCC
Q 011236 285 LISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGM 364 (490)
Q Consensus 285 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (490)
.+..|...|+++.+....+.... |. . .+...++.+++...++...+. -+.|...|..+...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCC
Confidence 34567889998886544322111 11 0 122366778888888887776 34577889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCC--HHHHHHHHHHHHHhhhcCcCCCcc-hhhHHHHHHHHHcCCCH
Q 011236 365 IEKADAVLKEIVKKGKTPTPNSWSIIAAGY-ADKNN--MEKAFECMKEALAVHEENKFWRPK-PSLVSSILDWLGDNRDV 440 (490)
Q Consensus 365 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 440 (490)
+++|...|++..+..+. +...+..+..++ ...|+ .++|.++++++++ ..|+ ...+..+...+...|++
T Consensus 89 ~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~-------~dP~~~~al~~LA~~~~~~g~~ 160 (198)
T PRK10370 89 YDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALA-------LDANEVTALMLLASDAFMQADY 160 (198)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-------hCCCChhHHHHHHHHHHHcCCH
Confidence 99999999999998765 788888888864 67777 5999999999998 3354 47788888899999999
Q ss_pred HHHHHHHHHHHhcccc
Q 011236 441 EEVEAFVSSLKIKVQK 456 (490)
Q Consensus 441 ~~a~~~~~~~~~~~~~ 456 (490)
++|...|+++.+..|+
T Consensus 161 ~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 161 AQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHHHhhCCC
Confidence 9999999999998888
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=0.00015 Score=65.76 Aligned_cols=201 Identities=15% Similarity=0.063 Sum_probs=132.2
Q ss_pred ChHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHH
Q 011236 222 ELSSMENVLQEMESQSH--ISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMM 299 (490)
Q Consensus 222 ~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 299 (490)
++..+...-+.+. ..+ -.|+...+...+.+......-..+-.++..-.+ + ......-.....+...|++++|+
T Consensus 252 RIa~lr~ra~q~p-~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~--~~~aa~YG~A~~~~~~~~~d~A~ 326 (484)
T COG4783 252 RIADLRNRAEQSP-PYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--R--GGLAAQYGRALQTYLAGQYDEAL 326 (484)
T ss_pred HHHHHHHHHHhCC-CCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--c--cchHHHHHHHHHHHHhcccchHH
Confidence 4445555555554 222 124455555555544444333333333333222 1 12222333333455778888999
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011236 300 KFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYD-FRVPNIILLGYSQKGMIEKADAVLKEIVKK 378 (490)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 378 (490)
..++.+....+ .|+.........+.+.++..+|.+.++.+... .|+ ....-.+..+|.+.|++.+|..+++.....
T Consensus 327 ~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~ 403 (484)
T COG4783 327 KLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN 403 (484)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 98888777655 66666777788888889999999999988885 444 556667888888899999999888888877
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 011236 379 GKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKV 454 (490)
Q Consensus 379 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 454 (490)
.+. |+..|..|.++|...|+..++.....++ +...|+++.|...+....+..
T Consensus 404 ~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~-----------------------~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 404 DPE-DPNGWDLLAQAYAELGNRAEALLARAEG-----------------------YALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCC-CchHHHHHHHHHHHhCchHHHHHHHHHH-----------------------HHhCCCHHHHHHHHHHHHHhc
Confidence 655 8888999999999888888777665554 344577777777777666654
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.57 E-value=2.9e-05 Score=77.60 Aligned_cols=148 Identities=11% Similarity=0.038 Sum_probs=79.0
Q ss_pred CcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 011236 171 SALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNF-SYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTV 249 (490)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 249 (490)
+...+..|+..+...+++++|.++.+...+. .|+.. .|-.+...+...++.+.+..+ . +
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~----------------~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N----------------L 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h----------------h
Confidence 3445666777777777777777777755553 23332 222233344455554443333 1 2
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 011236 250 ANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGE 329 (490)
Q Consensus 250 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 329 (490)
+.......++.-...+...|...+ .+..++..+..+|-+.|+.+++..+|++.....+ -++...+.+...|... +
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~---~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG---ENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh---hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-h
Confidence 222222333322233333333322 2344566666666666777777777766666653 5566666666666666 6
Q ss_pred HHHHHHHHHHHHhc
Q 011236 330 LEEAEKMLEEWELS 343 (490)
Q Consensus 330 ~~~a~~~~~~~~~~ 343 (490)
.++|.+++.+....
T Consensus 165 L~KA~~m~~KAV~~ 178 (906)
T PRK14720 165 KEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665543
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=9.5e-05 Score=61.11 Aligned_cols=187 Identities=18% Similarity=0.113 Sum_probs=119.4
Q ss_pred CChHHHHHHHHHHHh--CCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChh
Q 011236 221 SELSSMENVLQEMES--QSH-ISMD-WGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKD 296 (490)
Q Consensus 221 g~~~~a~~~~~~~~~--~~~-~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 296 (490)
.+.++..+++.++.. ..+ ..++ +..|-.++-+....|+.+.|...++++....+. +...-..-...+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~--S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG--SKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhchh
Confidence 355566666655542 122 3333 334555666667777777777777777766543 2222222222344567788
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011236 297 EMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIV 376 (490)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 376 (490)
+|.++|+.....++ .|..++.--+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 88888887776664 56666666566666667766777777777766 66788888888888888888888888888887
Q ss_pred HcCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHHHH
Q 011236 377 KKGKTPTPNSWSIIAAGYADK---NNMEKAFECMKEALA 412 (490)
Q Consensus 377 ~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 412 (490)
-..+. ++..+..+...+.-. .+.+.+..+|.++++
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 76543 555555555554433 346677788888877
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.56 E-value=3.5e-06 Score=66.24 Aligned_cols=94 Identities=11% Similarity=0.014 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhc
Q 011236 72 LQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVRE 150 (490)
Q Consensus 72 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~ 150 (490)
+......+...|++++|...|+...... +.+...+..+..++...|++++|...|+.....+| +..++..+..++.+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4444555556666666666666665554 34555555555566666666666666666655554 455555556666666
Q ss_pred CChhHHHHHHHHHHhc
Q 011236 151 GLVDESLSLMQKMKEM 166 (490)
Q Consensus 151 g~~~~a~~~~~~m~~~ 166 (490)
|+.++|+..|+.....
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666665554
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=0.00018 Score=65.32 Aligned_cols=197 Identities=16% Similarity=0.094 Sum_probs=111.8
Q ss_pred HHHHHHHHHHccccC----CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHH
Q 011236 120 LESAETYFNSLNDED----KVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVL 195 (490)
Q Consensus 120 ~~~A~~~~~~~~~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 195 (490)
+.++...-+.++..+ |+...+...+.+......-..+..++.+-.+. .-...-|..-+. +...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHHH
Confidence 344444445554432 44555555555444433333333333222221 112223333333 33567777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 011236 196 LDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMD-WGTYSTVANYYIIAGLKEKAIIYLKKCEDIVS 274 (490)
Q Consensus 196 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 274 (490)
+.+... .+-|..........+.+.++.++|.+.++++. ... |+ ....-.+..+|.+.|++.+|+.+++......+
T Consensus 330 ~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal-~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 330 QPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKAL-ALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 776664 22344444555567777777777777777776 333 33 33444566777777777777777777666555
Q ss_pred cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011236 275 KSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELS 343 (490)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 343 (490)
.|+..|..|.++|...|+..++.....+. +...|++++|...+....+.
T Consensus 406 --~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 406 --EDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred --CCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHh
Confidence 56677777777777777766666555432 34456777777776666655
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=9.1e-05 Score=61.20 Aligned_cols=192 Identities=16% Similarity=0.092 Sum_probs=138.6
Q ss_pred HcCCHHHHHHHHHHHhhhhccC---CCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 011236 255 IAGLKEKAIIYLKKCEDIVSKS---KDA-LGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGEL 330 (490)
Q Consensus 255 ~~~~~~~a~~~~~~~~~~~~~~---~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 330 (490)
...+.++..+++.++......+ ++. ..|..++-+....|+.+.|...++.+....+ .+...-..-..-+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp-~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP-GSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhch
Confidence 3457888888888887543321 333 3455566677788999999999998777764 3333333333334567899
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011236 331 EEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEA 410 (490)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 410 (490)
++|.++++.+.+.. +.|..++--=+-..-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-+++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999998874 446666666666666778888888888888776 3449999999999999999999999999999
Q ss_pred HHhhhcCcCCCcch-hhHHHHHHHHHcCC---CHHHHHHHHHHHHhcccc
Q 011236 411 LAVHEENKFWRPKP-SLVSSILDWLGDNR---DVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 411 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~ 456 (490)
+- +.|-. ..+..+...+.-.| +.+.+.+++.+..+..+.
T Consensus 181 ll-------~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 181 LL-------IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HH-------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 87 44544 44556666554444 456788899998888774
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.45 E-value=9.6e-06 Score=63.38 Aligned_cols=95 Identities=15% Similarity=0.053 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 011236 316 DYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYA 395 (490)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 395 (490)
....+...+...|++++|.+.++.+...+ +.+...+..+...|...|++++|...++...+.++. +...+..+...+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 34444455555555555555555555532 224445555555555555566665555555554322 4445555555555
Q ss_pred ccCCHHHHHHHHHHHHH
Q 011236 396 DKNNMEKAFECMKEALA 412 (490)
Q Consensus 396 ~~~~~~~a~~~~~~~~~ 412 (490)
..|++++|...|+.+++
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55666666666655555
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.37 E-value=2.2e-05 Score=61.35 Aligned_cols=112 Identities=13% Similarity=0.011 Sum_probs=91.8
Q ss_pred HHHHHHhcCCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 011236 336 MLEEWELSCYCY-DFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVH 414 (490)
Q Consensus 336 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 414 (490)
.++..... .| +......+...+...|++++|...|+.+...++. +...|..+...+...|++++|..+++.+...
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAAL- 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 44555553 33 3445667778889999999999999999887654 7888999999999999999999999999871
Q ss_pred hcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 415 EENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 415 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
...+...+..+...+...|++++|...|+...+..|.
T Consensus 81 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 81 -----DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred -----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 2234577888888999999999999999999998887
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.36 E-value=0.0034 Score=61.56 Aligned_cols=225 Identities=9% Similarity=-0.001 Sum_probs=135.5
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHH
Q 011236 46 LGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAET 125 (490)
Q Consensus 46 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 125 (490)
.++...|+..+-.-+.+.+..+....+..+. +.+.|+.++|..+++.....+. .+..+...+-.+|...++.++|..
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHH
Confidence 3455556653333333333333333333332 3477888888888887776663 477788888888888999999999
Q ss_pred HHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC-Cc---------CcHHHHH
Q 011236 126 YFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTG-QH---------EKIPDVL 195 (490)
Q Consensus 126 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~---------~~a~~~~ 195 (490)
+|++..+..|+......+..+|++.+++.+-.++=-+|... .+-+...+=++++.....- .. .-|.+.+
T Consensus 99 ~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 99999888888777777888888888776544433333332 2224444444444444332 11 2244556
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 011236 196 LDMKENG-VPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVS 274 (490)
Q Consensus 196 ~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 274 (490)
+.+.+.+ .--+..-.......+...|++++|..++..=..+.-...+...-+.-+..+...+++.+..++-.++...+.
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 6665543 111222233334455567888888888843321333333444445567778888888888888888877665
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.31 E-value=3.7e-05 Score=70.28 Aligned_cols=120 Identities=17% Similarity=0.117 Sum_probs=53.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcC
Q 011236 284 HLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKG 363 (490)
Q Consensus 284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 363 (490)
.|+..+...++++.|.++++++.... |+ ....+++.+...++-.+|.+++.+..+. .+-+..........+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 33334444445555555555444432 22 2223444444444444555555544433 1223333333334444555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 011236 364 MIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKE 409 (490)
Q Consensus 364 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 409 (490)
+++.|+.+.+++.+..+. +..+|..|..+|.+.|+++.|+..++.
T Consensus 249 ~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 555555555555544222 333455555555555555555544443
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.27 E-value=1.7e-06 Score=49.22 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 011236 139 LYGALLNCYVREGLVDESLSLMQKMKEMGSFGS 171 (490)
Q Consensus 139 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 171 (490)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777776665
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=2.8e-06 Score=48.24 Aligned_cols=33 Identities=27% Similarity=0.521 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKTPT 383 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 383 (490)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.21 E-value=0.00012 Score=57.87 Aligned_cols=125 Identities=13% Similarity=0.094 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc--hhHHHHH
Q 011236 282 YNHLISHYASLGNKDEMMKFWGLQKIKCKKQL---NRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDF--RVPNIIL 356 (490)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 356 (490)
|..++..+ ..++...+...++.+....+ .+ ......+...+...|++++|...|+.+......|+. ...-.|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344333 25555555555555555443 11 122233445555566666666666666554322221 1222344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011236 357 LGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEA 410 (490)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 410 (490)
..+...|++++|+..++...... .....+......|.+.|+.++|...|+.+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 55555666666666664432221 22334455555666666666666665543
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.20 E-value=3.1e-06 Score=47.65 Aligned_cols=33 Identities=36% Similarity=0.509 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 011236 138 KLYGALLNCYVREGLVDESLSLMQKMKEMGSFG 170 (490)
Q Consensus 138 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 170 (490)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
No 143
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.16 E-value=3.8e-05 Score=70.52 Aligned_cols=120 Identities=16% Similarity=0.176 Sum_probs=82.3
Q ss_pred CCChhhHHHHHHHHHhhcCHHHHHHHHHHccccC----CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHH
Q 011236 101 AFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED----KVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYN 176 (490)
Q Consensus 101 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 176 (490)
+.++.....+++.+....+++.+..++-...... .-..+..++++.|.+.|..++++.+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4455556666666666666666666666555432 112344577777888888888888887777778888888888
Q ss_pred HHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 011236 177 GIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGAR 220 (490)
Q Consensus 177 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 220 (490)
.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888777776666656666776666666655
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=4.8e-06 Score=46.87 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKTP 382 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 382 (490)
+|+.++.+|++.|+++.|..+|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=0.00012 Score=67.00 Aligned_cols=122 Identities=16% Similarity=0.040 Sum_probs=79.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Q 011236 248 TVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKI 327 (490)
Q Consensus 248 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 327 (490)
.|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++.+.....+ .+......-...|.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 45555556677777777777766533 22 344466666666677777777776665544 4455555556667777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011236 328 GELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIV 376 (490)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 376 (490)
++++.|..+.+++.+. .+-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777777775 23344577777777888888887777776654
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.14 E-value=0.00017 Score=56.88 Aligned_cols=126 Identities=15% Similarity=0.101 Sum_probs=92.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 011236 316 DYITMLGSLVKIGELEEAEKMLEEWELSCYCYD---FRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTP--NSWSII 390 (490)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l 390 (490)
.|..++..+ ..++...+...++.+.+... .+ ....-.+...+...|++++|...|+.+.+....|+. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 455555555 47888999999999988632 22 122333556788899999999999999997643332 245567
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 011236 391 AAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSL 450 (490)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 450 (490)
...+...|++++|+..++.... .. .....+......+.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~-----~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPD-----EA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccC-----cc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7888999999999999976433 22 34456777888999999999999999864
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.11 E-value=0.00016 Score=54.91 Aligned_cols=102 Identities=14% Similarity=0.050 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHH
Q 011236 352 PNIILLGYSQKGMIEKADAVLKEIVKKGKT--PTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSS 429 (490)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 429 (490)
+..+...+.+.|++++|...|+.+.+..+. .....+..+...+.+.|+++.|...|+.+....| +.......+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~~ 81 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---KSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC---CCCcccHHHHH
Confidence 334445555555555555555555543221 0123344455555555666666666655554221 11111234444
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 430 ILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 430 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
+..++.+.|+.++|.+.++.+.+..|.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 555555556666666666655555554
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.10 E-value=0.013 Score=57.76 Aligned_cols=211 Identities=10% Similarity=0.065 Sum_probs=131.1
Q ss_pred chhhhhhhhhccCCCCcccHHHhh--ccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011236 20 NLEIFTRAYRAVKPVARNNLYSRI--SPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSG 97 (490)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 97 (490)
++......-+..+...+..++.++ .+.|+.+++.. +++.....+.. |..+...+-..|...++.++|..+|++...
T Consensus 28 al~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~-~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 28 ALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALK-LLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHH-HHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 333333444444555566666664 46889999985 88877665555 888999999999999999999999999998
Q ss_pred CCCCCChhhHHHHHHHHHhhcCHHH----HHHHHHHccccCCChhHHHHHHHHHHhcC-C---------hhHHHHHHHHH
Q 011236 98 QGLAFSVHDHAVQLDLIGKVRGLES----AETYFNSLNDEDKVDKLYGALLNCYVREG-L---------VDESLSLMQKM 163 (490)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~p~~~~~~~li~~~~~~g-~---------~~~a~~~~~~m 163 (490)
.. |+......+..+|.+.+++.. |.+++...++ +...+=++++...+.- . ..-|.+.++.+
T Consensus 106 ~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk---~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~ 180 (932)
T KOG2053|consen 106 KY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK---RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKL 180 (932)
T ss_pred hC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHH
Confidence 86 568888888899999888764 5566654433 2322223333333321 1 12355566666
Q ss_pred HhcC-CCCCcchHHHHHHHHHhcCCcCcHHHHHH-HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCC
Q 011236 164 KEMG-SFGSALNYNGIMCLYTNTGQHEKIPDVLL-DMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSH 238 (490)
Q Consensus 164 ~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 238 (490)
.+.+ ..-+..-...-...+-..|++++|++++. ...+.-..-+...-+.-+..+...+++.+..++-.++. ..+
T Consensus 181 l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll-~k~ 256 (932)
T KOG2053|consen 181 LEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL-EKG 256 (932)
T ss_pred hccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH-HhC
Confidence 6553 11111111222233446678888888873 33333233344444556666777777777777666666 444
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.10 E-value=0.00046 Score=61.36 Aligned_cols=134 Identities=19% Similarity=0.129 Sum_probs=67.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHH
Q 011236 322 GSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQK-GMIEKADAVLKEIVKK----GKTPT--PNSWSIIAAGY 394 (490)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~ 394 (490)
..|...|++..|-+.+..+ ...|... |++++|++.|++..+. | .+. ..++..+...+
T Consensus 102 ~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHH
Confidence 3445555555555444443 2334444 6666666666665442 1 111 22455666667
Q ss_pred hccCCHHHHHHHHHHHHHhhhcCcCCCcchh-hHHHHHHHHHcCCCHHHHHHHHHHHHhcccc------hhhhHHHHHHH
Q 011236 395 ADKNNMEKAFECMKEALAVHEENKFWRPKPS-LVSSILDWLGDNRDVEEVEAFVSSLKIKVQK------RNMYHALTEAH 467 (490)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~l~~~~ 467 (490)
.+.|++++|.++|++......+....+.+.. .+...+-.+...||...|.+.+++.....|. ......|+.++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 7777777777777776652211112223332 2233333455567777777777777766543 34455566666
Q ss_pred HhcC
Q 011236 468 IRSG 471 (490)
Q Consensus 468 ~~~g 471 (490)
-...
T Consensus 246 ~~~D 249 (282)
T PF14938_consen 246 EEGD 249 (282)
T ss_dssp HTT-
T ss_pred HhCC
Confidence 6555
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.08 E-value=8e-05 Score=68.41 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=64.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHH
Q 011236 278 DALGYNHLISHYASLGNKDEMMKFWGLQKIKCK--KQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNII 355 (490)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 355 (490)
+......++..+....+.+.+..++-+...... ..-+.|..++++.|.+.|..+.+..+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 444455555555555555555555554443321 122334456666666666666666666655555666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 011236 356 LLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD 396 (490)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 396 (490)
++.+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666555555444455554444444443
No 151
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.04 E-value=0.0083 Score=53.24 Aligned_cols=120 Identities=16% Similarity=0.024 Sum_probs=53.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhc
Q 011236 250 ANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIK--CKKQLNRDYITMLGSLVKI 327 (490)
Q Consensus 250 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 327 (490)
..++.+.|+..++-.+++.+.+..+. |++. .+..+.+.|+ .++.-+++.... -...+..+...+..+....
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePH-P~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPH-PDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCC-hHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 34555556666666666655554443 4321 1111222332 222222222111 1112334444555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh-cCCHHHHHHHHHHHHHc
Q 011236 328 GELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQ-KGMIEKADAVLKEIVKK 378 (490)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~ 378 (490)
|++..|..--+.... ..|....|-.|.+.-.. .|+-.++...+.+..+.
T Consensus 343 ~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 343 GEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 655555554444443 24444455444444322 35666666555555543
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.02 E-value=0.00018 Score=54.63 Aligned_cols=97 Identities=8% Similarity=-0.058 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCC----hhHHHHHH
Q 011236 71 ELQRVIRQLRSRKRFKHALQVSEWMSGQGL--AFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKV----DKLYGALL 144 (490)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~li 144 (490)
++..+...+.+.|++++|.+.|+.+.+... +..+.....+..++.+.|+++.|...|+.+....|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 444555556666666666666666665432 111334445556666666666666666665554332 33455555
Q ss_pred HHHHhcCChhHHHHHHHHHHhcC
Q 011236 145 NCYVREGLVDESLSLMQKMKEMG 167 (490)
Q Consensus 145 ~~~~~~g~~~~a~~~~~~m~~~~ 167 (490)
.++.+.|+.++|...++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 56666666666666666666553
No 153
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.00056 Score=60.78 Aligned_cols=87 Identities=16% Similarity=-0.010 Sum_probs=46.9
Q ss_pred HhcCCHHHHHHHHHHHHhcC---CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 011236 325 VKIGELEEAEKMLEEWELSC---YCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNME 401 (490)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 401 (490)
.+.|++..|.+.+.+.+... ..|+...|........+.|+.++|+.-.+...+.+.. -...|..-..++...++|+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWE 338 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHH
Confidence 45666777777776666532 2333344444555556667777777666666554211 1112222233444556666
Q ss_pred HHHHHHHHHHH
Q 011236 402 KAFECMKEALA 412 (490)
Q Consensus 402 ~a~~~~~~~~~ 412 (490)
+|.+-++.+.+
T Consensus 339 ~AV~d~~~a~q 349 (486)
T KOG0550|consen 339 EAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHh
Confidence 66666666665
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.01 E-value=0.00011 Score=52.94 Aligned_cols=93 Identities=14% Similarity=0.034 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHH
Q 011236 354 IILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDW 433 (490)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 433 (490)
.+...+...|++++|...++++.+.... +...+..+...+...+++++|.+.++...... ..+..++..+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~~~ 77 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD------PDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CcchhHHHHHHHH
Confidence 3444445555555555555555444322 23444445555555555555555555554411 1122344444455
Q ss_pred HHcCCCHHHHHHHHHHHHhc
Q 011236 434 LGDNRDVEEVEAFVSSLKIK 453 (490)
Q Consensus 434 ~~~~g~~~~a~~~~~~~~~~ 453 (490)
+...|+++.|...+....+.
T Consensus 78 ~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 78 YYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHhHHHHHHHHHHHHcc
Confidence 55555555555555554443
No 155
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.99 E-value=0.0079 Score=51.88 Aligned_cols=179 Identities=11% Similarity=0.024 Sum_probs=98.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhH---HHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 011236 249 VANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGY---NHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLV 325 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 325 (490)
....+...|++++|.+.|+++....+. +.... -.++.++.+.+++++|...+++.....+.-....+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~--s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF--GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 444455566777777777776665443 22222 3345556667777777777776666655333333333333332
Q ss_pred h--c---------------CC---HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 011236 326 K--I---------------GE---LEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPN 385 (490)
Q Consensus 326 ~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 385 (490)
. . .| ...|...|+.+++. |-...-..+|...+..+.+. =..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HHH
Confidence 1 1 11 12333444444443 22223344454444443321 001
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011236 386 SWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLK 451 (490)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 451 (490)
---.+..-|.+.|.+..|..-++.+++.+ .+..........++.+|...|..++|..+...+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y---p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDY---PDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11244566788888888888888888855 2444445667777788888888888887766553
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.00016 Score=61.46 Aligned_cols=102 Identities=20% Similarity=0.107 Sum_probs=80.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 011236 323 SLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEK 402 (490)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (490)
-+.+.+++++|...|.+.++. .+-|.+.|..=..+|++.|.++.|++-.+..+..++. -..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 456778899999999998886 3346677777888899999999999888888886544 45688899999999999999
Q ss_pred HHHHHHHHHHhhhcCcCCCcchhhHHHHHHH
Q 011236 403 AFECMKEALAVHEENKFWRPKPSLVSSILDW 433 (490)
Q Consensus 403 a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 433 (490)
|++.|+++++ +.|+-.+|..=+..
T Consensus 168 A~~aykKaLe-------ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALE-------LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhc-------cCCCcHHHHHHHHH
Confidence 9999999887 66877777655443
No 157
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.98 E-value=0.00013 Score=52.20 Aligned_cols=79 Identities=10% Similarity=0.173 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCchhHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 011236 318 ITMLGSLVKIGELEEAEKMLEEWELSCY-CYDFRVPNIILLGYSQKG--------MIEKADAVLKEIVKKGKTPTPNSWS 388 (490)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~ 388 (490)
...|..|...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. ++-..+.+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455556666788888888888888887 778888888877766542 2445667777787777888888888
Q ss_pred HHHHHHhc
Q 011236 389 IIAAGYAD 396 (490)
Q Consensus 389 ~l~~~~~~ 396 (490)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 87776654
No 158
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.93 E-value=0.015 Score=52.64 Aligned_cols=133 Identities=11% Similarity=0.081 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHH
Q 011236 315 RDYITMLGSLVKIGELEEAEKMLEEWELSC-YCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSW-SIIAA 392 (490)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~ 392 (490)
..|...+.+-.+..-++.|..+|-+..+.| +.+++.++++++..++. |+..-|..+|+--... -||...| +-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456777888788888999999999999988 67888899999988774 6777888888765544 2455443 45566
Q ss_pred HHhccCCHHHHHHHHHHHHHhhhcCcCCCcc--hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 393 GYADKNNMEKAFECMKEALAVHEENKFWRPK--PSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
.+...++-..|..+|+..+. .+..+ ...|..+|..-..-|+...+..+-+++....|.
T Consensus 475 fLi~inde~naraLFetsv~------r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 475 FLIRINDEENARALFETSVE------RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHH------HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 67788999999999998876 33344 478999999989999999999888888888776
No 159
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.92 E-value=0.00011 Score=52.73 Aligned_cols=79 Identities=19% Similarity=0.186 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCcchHHHHHHHHHhcCC--------cCcHHHHHHHHHHCCCCCCHHHHH
Q 011236 141 GALLNCYVREGLVDESLSLMQKMKEMGS-FGSALNYNGIMCLYTNTGQ--------HEKIPDVLLDMKENGVPPDNFSYR 211 (490)
Q Consensus 141 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~--------~~~a~~~~~~m~~~~~~p~~~~~~ 211 (490)
...|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++..- .-..+.+|++|+..+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666888888888888888888 8888888888887765432 234566777777777888888888
Q ss_pred HHHHHHhc
Q 011236 212 ICINSYGA 219 (490)
Q Consensus 212 ~li~~~~~ 219 (490)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77776543
No 160
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.92 E-value=0.00015 Score=64.10 Aligned_cols=50 Identities=12% Similarity=0.095 Sum_probs=32.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcc----hHHHHHHHHHhcCCcCcHHHHH
Q 011236 145 NCYVREGLVDESLSLMQKMKEMGSFGSAL----NYNGIMCLYTNTGQHEKIPDVL 195 (490)
Q Consensus 145 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~ 195 (490)
.-+|+.|+....+.+|+...+.|.. |.. .|..|.++|.-.+++++|+++.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 3467778888888888888777654 433 3555566666666777776653
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.91 E-value=0.00021 Score=51.45 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 011236 317 YITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD 396 (490)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 396 (490)
+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++...+.... +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 3445555566666666766666666542 222345555666666667777777777766665433 44566666666777
Q ss_pred cCCHHHHHHHHHHHHH
Q 011236 397 KNNMEKAFECMKEALA 412 (490)
Q Consensus 397 ~~~~~~a~~~~~~~~~ 412 (490)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777766654
No 162
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.88 E-value=1.7e-05 Score=43.40 Aligned_cols=29 Identities=31% Similarity=0.689 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011236 139 LYGALLNCYVREGLVDESLSLMQKMKEMG 167 (490)
Q Consensus 139 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 167 (490)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666654
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.88 E-value=0.00036 Score=64.09 Aligned_cols=90 Identities=6% Similarity=-0.073 Sum_probs=53.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 011236 321 LGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNM 400 (490)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 400 (490)
...+...|++++|.+.|+++++.. +.+...|..+..+|.+.|++++|+..++++++..+. +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 344455566666666666666542 223445555566666666666666666666665433 455566666666666666
Q ss_pred HHHHHHHHHHHH
Q 011236 401 EKAFECMKEALA 412 (490)
Q Consensus 401 ~~a~~~~~~~~~ 412 (490)
++|+..|+++++
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 666666666665
No 164
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.88 E-value=0.00024 Score=57.77 Aligned_cols=61 Identities=16% Similarity=0.297 Sum_probs=43.5
Q ss_pred HHHHHHccccCCChhHHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 011236 124 ETYFNSLNDEDKVDKLYGALLNCYVR-----EGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTN 184 (490)
Q Consensus 124 ~~~~~~~~~~~p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 184 (490)
...|+.......+-.+|..++..|.+ .|.++=....+..|.+-|+.-|..+|+.|++.+=+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 34455554444566777777777765 36677777788888888888888888888887654
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.87 E-value=0.00063 Score=52.79 Aligned_cols=90 Identities=11% Similarity=-0.008 Sum_probs=63.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCc
Q 011236 110 QLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQH 188 (490)
Q Consensus 110 l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 188 (490)
+...+...|++++|..+|+.+...+| +..-|-.|.-++-..|++++|+..|......++. |+..+-.+..++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCH
Confidence 34445567777777777777777776 4555666777777777777777777777777654 667777777777777777
Q ss_pred CcHHHHHHHHHH
Q 011236 189 EKIPDVLLDMKE 200 (490)
Q Consensus 189 ~~a~~~~~~m~~ 200 (490)
+.|.+.|+..+.
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 777777776655
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.86 E-value=0.00085 Score=54.73 Aligned_cols=62 Identities=11% Similarity=-0.113 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011236 281 GYNHLISHYASLGNKDEMMKFWGLQKIKCKKQL--NRDYITMLGSLVKIGELEEAEKMLEEWEL 342 (490)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (490)
.+..+...+...|++++|...|++.....+.+. ...+..+...+.+.|++++|...+++..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444445555555555554443322111 12344444444444444444444444443
No 167
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.86 E-value=2.4e-05 Score=42.85 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=15.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKG 379 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 379 (490)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.86 E-value=0.00049 Score=63.21 Aligned_cols=92 Identities=9% Similarity=-0.153 Sum_probs=61.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCH
Q 011236 286 ISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMI 365 (490)
Q Consensus 286 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 365 (490)
...+...|++++|+..|++.+...+ .+...|..+..+|.+.|++++|...++.+.+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 3445566777777777777766655 455666667777777777777777777776642 22445566666677777777
Q ss_pred HHHHHHHHHHHHcC
Q 011236 366 EKADAVLKEIVKKG 379 (490)
Q Consensus 366 ~~A~~~~~~m~~~~ 379 (490)
++|...|++.++.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777654
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.81 E-value=4.2e-05 Score=53.81 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=9.0
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 011236 355 ILLGYSQKGMIEKADAVLKE 374 (490)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~ 374 (490)
+..+|.+.|++++|..++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444444
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.81 E-value=0.00055 Score=60.60 Aligned_cols=132 Identities=14% Similarity=0.143 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011236 316 DYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLG-YSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGY 394 (490)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 394 (490)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|-..... |...++.+.|.++|+...+.- ..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 34445555555555555555555555321 1122233333333 222344444555555555442 22444555555555
Q ss_pred hccCCHHHHHHHHHHHHHhhhcCcCCCcch---hhHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 011236 395 ADKNNMEKAFECMKEALAVHEENKFWRPKP---SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQ 455 (490)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 455 (490)
.+.++.+.|..+|++++. .+.++. ..|...+..-.+.|+.+.+.++.+++.+..+
T Consensus 81 ~~~~d~~~aR~lfer~i~------~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 81 IKLNDINNARALFERAIS------SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHTT-HHHHHHHHHHHCC------TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHhCcHHHHHHHHHHHHH------hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 555555555555555554 121211 3555555555555555555555555554433
No 171
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.80 E-value=0.00065 Score=52.72 Aligned_cols=90 Identities=7% Similarity=-0.015 Sum_probs=49.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc-hhhHHHHHHH
Q 011236 355 ILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK-PSLVSSILDW 433 (490)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~ 433 (490)
+...+...|++++|.++|+.+...++. +..-|-.|..++-..|++++|+..|..+.. +.|| +..+-.+..+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-------L~~ddp~~~~~ag~c 112 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-------IKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------cCCCCchHHHHHHHH
Confidence 334445556666666666665554433 445555555556666666666666666655 2232 2455555555
Q ss_pred HHcCCCHHHHHHHHHHHHh
Q 011236 434 LGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 434 ~~~~g~~~~a~~~~~~~~~ 452 (490)
+...|+.+.|++.|+....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666655544
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.80 E-value=0.00013 Score=51.27 Aligned_cols=80 Identities=24% Similarity=0.225 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011236 257 GLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKM 336 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 336 (490)
|+++.|+.+++++....+..++...+..+..+|.+.|++++|..+++. ....+ .+......+..+|.+.|++++|.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 444444444444444333101222333344444444444444444443 11111 1122222334444444444444444
Q ss_pred HH
Q 011236 337 LE 338 (490)
Q Consensus 337 ~~ 338 (490)
++
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 173
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.79 E-value=0.02 Score=54.73 Aligned_cols=54 Identities=4% Similarity=-0.010 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011236 205 PDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKK 268 (490)
Q Consensus 205 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 268 (490)
-|....-.+..++.+.|.-++|.+.|-+.. . |- ..+..|...++|.+|.++-+.
T Consensus 850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~-pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 850 EDSELLPVMADMFTSVGMCDQAVEAYLRRS----L-PK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHhcc----C-cH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 344455566667777777777766654432 1 11 144556666777777766655
No 174
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.0021 Score=57.23 Aligned_cols=106 Identities=14% Similarity=-0.013 Sum_probs=75.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHH
Q 011236 359 YSQKGMIEKADAVLKEIVKKG---KTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWL 434 (490)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~ 434 (490)
..+.|++.+|.+.+.+.+..+ ..|+...|.....+..+.|+.++|+.-.++++. +.|.. ..+..-..++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~-------iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK-------IDSSYIKALLRRANCH 331 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh-------cCHHHHHHHHHHHHHH
Confidence 567899999999999998754 456777888888889999999999999999987 22322 2233333455
Q ss_pred HcCCCHHHHHHHHHHHHhcccc---hhhhHHHHHHHHhcC
Q 011236 435 GDNRDVEEVEAFVSSLKIKVQK---RNMYHALTEAHIRSG 471 (490)
Q Consensus 435 ~~~g~~~~a~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 471 (490)
...++|++|.+-+++..+.... ..++.-...++.+..
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSK 371 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhh
Confidence 6678999999999887765544 444544444554444
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.00042 Score=59.09 Aligned_cols=98 Identities=17% Similarity=0.044 Sum_probs=82.0
Q ss_pred HHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CchhHHHHHHHHHhcCCHHH
Q 011236 289 YASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCY-DFRVPNIILLGYSQKGMIEK 367 (490)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 367 (490)
+.+.+++.+|+..|.+.+...+ .|...|..-..+|++.|.++.|.+-.+..+.. .| ...+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 6778999999999999988776 78888899999999999999999988888774 33 35689999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH
Q 011236 368 ADAVLKEIVKKGKTPTPNSWSIIA 391 (490)
Q Consensus 368 A~~~~~~m~~~~~~p~~~~~~~l~ 391 (490)
|.+.|++.++. .|+-.+|..=+
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHH
Confidence 99999999886 45555554333
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.75 E-value=0.00093 Score=54.31 Aligned_cols=96 Identities=18% Similarity=-0.013 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011236 316 DYITMLGSLVKIGELEEAEKMLEEWELSCYCY--DFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAG 393 (490)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 393 (490)
.+..+...+...|++++|...++........+ ...++..+...|...|++++|+..+++....... ...++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 34455555555666666666666665442221 1235556666666667777777776666654322 33445555555
Q ss_pred Hh-------ccCCHHHHHHHHHHHHH
Q 011236 394 YA-------DKNNMEKAFECMKEALA 412 (490)
Q Consensus 394 ~~-------~~~~~~~a~~~~~~~~~ 412 (490)
+. ..|+++.|...++++..
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 54 66777766555555544
No 177
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.74 E-value=0.00028 Score=62.54 Aligned_cols=285 Identities=14% Similarity=0.001 Sum_probs=130.3
Q ss_pred HHHhcCCcCcHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHH---h--CCCCCCCHHHHHHHHH
Q 011236 181 LYTNTGQHEKIPDVLLDMKENGVPPDN----FSYRICINSYGARSELSSMENVLQEME---S--QSHISMDWGTYSTVAN 251 (490)
Q Consensus 181 ~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~---~--~~~~~~~~~~~~~li~ 251 (490)
-+++.|+......+|+..++-|.. |. .+|..|.++|.-.+++++|+++...=. . .... -.......|.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl-GEAKssgNLGN 103 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL-GEAKSSGNLGN 103 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh-ccccccccccc
Confidence 367777888888888877776642 32 345666667777777777776532111 0 0001 11222333455
Q ss_pred HHHHcCCHHHHHHHHHH----HhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Q 011236 252 YYIIAGLKEKAIIYLKK----CEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKI 327 (490)
Q Consensus 252 ~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 327 (490)
.+--.|.+++|+-.-.+ ..+.+........+-.+...|...|+.-....- ...+..+...+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g~f~~ev~----------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKGAFNAEVT----------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcccccHHHH-----------
Confidence 55555666665543322 222222212223444444555443321100000 00000000000
Q ss_pred CCHHHHHHHHHHHH----hcCCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHhcc
Q 011236 328 GELEEAEKMLEEWE----LSCYC-YDFRVPNIILLGYSQKGMIEKADAVLKEIV----KKGKT-PTPNSWSIIAAGYADK 397 (490)
Q Consensus 328 ~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~~~~~l~~~~~~~ 397 (490)
..++.|.++|.+-. +.|-. .--..|..|...|.-.|+++.|+...+.-. +.|-+ .....+..+..++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 01122222222211 11100 011234445555555666766665443321 22211 1223566666777777
Q ss_pred CCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHh----ccc--c-hhhhHHHHHHHHhc
Q 011236 398 NNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKI----KVQ--K-RNMYHALTEAHIRS 470 (490)
Q Consensus 398 ~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~--~-~~~~~~l~~~~~~~ 470 (490)
|+++.|.+.|+..+.+..+-..-.....+..+|...|.-..+++.|+.++.+-.. .+- . ...+.+|..+|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 7777777777665442221111222334455666666666666666665543222 111 1 56666777777776
Q ss_pred C--CcHHHHHHHHH
Q 011236 471 G--QEVDGLLESMK 482 (490)
Q Consensus 471 g--~~a~~~~~~m~ 482 (490)
| ++|+.+.+.-.
T Consensus 329 g~h~kAl~fae~hl 342 (639)
T KOG1130|consen 329 GEHRKALYFAELHL 342 (639)
T ss_pred hhHHHHHHHHHHHH
Confidence 6 66665555443
No 178
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.74 E-value=0.012 Score=49.31 Aligned_cols=173 Identities=14% Similarity=0.051 Sum_probs=76.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Q 011236 249 VANYYIIAGLKEKAIIYLKKCEDIVSKSK-DALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKI 327 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 327 (490)
....+...|++++|...|+.+....+.++ -....-.++.++.+.|+++.|...++..+...+......+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 44455566666666666666665544211 12334455566666666666666666666655522222222222222211
Q ss_pred C-------------CHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011236 328 G-------------ELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGY 394 (490)
Q Consensus 328 ~-------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 394 (490)
. ...+|...| ..++.-|-...-..+|...+..+.+. =..---.+...|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~---------------~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEF---------------EELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHH---------------HHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHH---------------HHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 1 111222222 22333333334444444444433321 001112234556
Q ss_pred hccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHH
Q 011236 395 ADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEV 443 (490)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 443 (490)
.+.|.+..|..-++.+++.+| +..........++.++.+.|..+.+
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp---~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYP---DTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHcccHHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHhCChHHH
Confidence 666666666666666666331 1111223445556666666665533
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.74 E-value=0.0024 Score=61.40 Aligned_cols=133 Identities=9% Similarity=-0.003 Sum_probs=68.7
Q ss_pred CChhhHHHHHHHHHhcC-----ChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHHHhc
Q 011236 277 KDALGYNHLISHYASLG-----NKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKI--------GELEEAEKMLEEWELS 343 (490)
Q Consensus 277 ~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~ 343 (490)
.|...|...+++..... +...|..+|++.....+ .....+..+..++... .++..+.+...+....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP-~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP-DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 45566666665543321 24466666666666554 3333343333322211 1122233333332221
Q ss_pred -CCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 344 -CYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 344 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
....+...|..+.-.+...|++++|...+++.++.+ |+...|..+...+...|+.++|.+.++++..
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 122233455555555555667777777777766654 4566666666667777777777777776665
No 180
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.70 E-value=0.0025 Score=52.03 Aligned_cols=95 Identities=14% Similarity=0.042 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHH
Q 011236 243 WGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKD-ALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITML 321 (490)
Q Consensus 243 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 321 (490)
...+..+...+...|++++|...|++.....+..++ ...+..+...+.+.|++++|...+.+.....+ .+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 455677778888889999999999888765443122 46788888888889999999999888877654 4456666777
Q ss_pred HHHHhcCCHHHHHHHHH
Q 011236 322 GSLVKIGELEEAEKMLE 338 (490)
Q Consensus 322 ~~~~~~~~~~~a~~~~~ 338 (490)
..+...|+...+..-++
T Consensus 114 ~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHcCChHhHhhCHH
Confidence 77777777655544333
No 181
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.70 E-value=0.017 Score=48.53 Aligned_cols=176 Identities=13% Similarity=0.047 Sum_probs=104.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 011236 282 YNHLISHYASLGNKDEMMKFWGLQKIKCKK--QLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGY 359 (490)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 359 (490)
.-.....+...|++.+|...|+.+....+. --......++.++.+.|+++.|...++.+.+.-+.....-+...+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 334455667788999999999988877652 222445677788888999999999999888752222222233333333
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHc
Q 011236 360 SQKGMIEKADAVLKEIVKKGKTP---TPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGD 436 (490)
Q Consensus 360 ~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 436 (490)
+......... ....+... -...+..++.-|=......+|...+..+.+.. ...-..+...|.+
T Consensus 88 ~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l---------a~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 88 SYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL---------AEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH---------HHHHHHHHHHHHC
T ss_pred HHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 2211111110 00000000 01235555555666666666666555554411 1112246678999
Q ss_pred CCCHHHHHHHHHHHHhcccc----hhhhHHHHHHHHhcC
Q 011236 437 NRDVEEVEAFVSSLKIKVQK----RNMYHALTEAHIRSG 471 (490)
Q Consensus 437 ~g~~~~a~~~~~~~~~~~~~----~~~~~~l~~~~~~~g 471 (490)
.|.+..|..-++.+.+..|. ......++.+|.+.|
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLG 192 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhC
Confidence 99999999999999999887 678889999999999
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.69 E-value=0.0013 Score=58.23 Aligned_cols=130 Identities=10% Similarity=0.077 Sum_probs=60.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhhccCCChhhHHHHHH
Q 011236 209 SYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYII-AGLKEKAIIYLKKCEDIVSKSKDALGYNHLIS 287 (490)
Q Consensus 209 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 287 (490)
+|..+++..-+.+..+.|..+|.+.. +.+. .+...|......-.. .++.+.|..+|+...+..+ .+...|...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~-~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRAR-KDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHH-cCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 45555555555555555555555555 3222 233334333333222 3444445555555555443 34455555555
Q ss_pred HHHhcCChhHHHHHHHHHHHhcCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011236 288 HYASLGNKDEMMKFWGLQKIKCKK-Q-LNRDYITMLGSLVKIGELEEAEKMLEEWEL 342 (490)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (490)
.+...|+.+.|..+|++....-.. . ....|...+.-=.+.|+++.+..+.+.+.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555544443210 0 112445555544555555555555555544
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.67 E-value=0.0057 Score=54.45 Aligned_cols=60 Identities=8% Similarity=0.003 Sum_probs=24.6
Q ss_pred HHhccCCHHHHHHHHHHHHHhhhcCcCCCcc--hhhHHHHHHHHHc--CCCHHHHHHHHHHHHhccc
Q 011236 393 GYADKNNMEKAFECMKEALAVHEENKFWRPK--PSLVSSILDWLGD--NRDVEEVEAFVSSLKIKVQ 455 (490)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~ 455 (490)
++...||...|...+++..... .++..+ ......|+.++-. ...+..+..-|+.+.+..+
T Consensus 205 ~~L~~~D~v~A~~~~~~~~~~~---~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 205 CHLAMGDYVAARKALERYCSQD---PSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHGTTS---TTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHcCCHHHHHHHHHHHHhhC---CCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 3334455555555555544422 122222 2344455555543 3445555555554444433
No 184
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0035 Score=53.94 Aligned_cols=99 Identities=11% Similarity=0.028 Sum_probs=55.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHH
Q 011236 312 QLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKG---MIEKADAVLKEIVKKGKTPTPNSWS 388 (490)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~ 388 (490)
.|...|..|..+|...|+.+.|..-|.+..+. .+++...+..+..++.... ...++..+|+++...+.. |+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 55556666666666666666666666665554 2334444444444433221 234556666666665544 555555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 011236 389 IIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
.|...+...|++.+|...|+.|++
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 556666666666666666666665
No 185
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.66 E-value=0.0016 Score=52.90 Aligned_cols=64 Identities=9% Similarity=-0.017 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 011236 245 TYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSK-DALGYNHLISHYASLGNKDEMMKFWGLQKIK 308 (490)
Q Consensus 245 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (490)
.|..+...+...|++++|+..|++.....+..+ ...++..+...+...|++++|...++.....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444445555555555555555443322101 1234455555555555555555555544443
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.65 E-value=0.00025 Score=47.48 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=40.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHH
Q 011236 80 RSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGA 142 (490)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 142 (490)
.+.|++++|+++|+.+.... |-+......+..++.+.|++++|..+++.+....|+...|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 35677777777777776665 346666666777777777777777777777776666434433
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.64 E-value=0.018 Score=49.64 Aligned_cols=174 Identities=10% Similarity=0.021 Sum_probs=103.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 011236 284 HLISHYASLGNKDEMMKFWGLQKIKCKKQLNRD---YITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYS 360 (490)
Q Consensus 284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (490)
.....+...|++++|.+.|+......+.+ ... .-.++.++.+.+++++|...+++..+.-+.....-+...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 34445566788888888888777766522 222 23556677778888888888888777532222223333333332
Q ss_pred h--cC---------------C---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCC
Q 011236 361 Q--KG---------------M---IEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFW 420 (490)
Q Consensus 361 ~--~g---------------~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 420 (490)
. .+ + ..+|...|+.+++ -|=...-..+|...+..+....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~l------ 174 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDRL------ 174 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHHH------
Confidence 1 10 1 1223333333333 3333333444444333332200
Q ss_pred CcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc----hhhhHHHHHHHHhcC--CcHHHHHHHHH
Q 011236 421 RPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK----RNMYHALTEAHIRSG--QEVDGLLESMK 482 (490)
Q Consensus 421 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~l~~~~~~~g--~~a~~~~~~m~ 482 (490)
...-..+.+-|.+.|.+..|..=++.+.+.-|. ......++.+|.+.| ++|......+.
T Consensus 175 ---a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 ---AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 011125567788999999999999999998887 778889999999999 77777665543
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.64 E-value=0.0088 Score=47.34 Aligned_cols=101 Identities=12% Similarity=-0.062 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC-CCChhhHHH
Q 011236 241 MDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCK-KQLNRDYIT 319 (490)
Q Consensus 241 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 319 (490)
|++..-..|..+....|+..+|...|.+....... .|......+.++....+++..|...++.+.+..+ ..++.+...
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA-~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFA-HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccC-CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 44444444555555555555555555554443222 4444444455555555555555555554444332 112223334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 011236 320 MLGSLVKIGELEEAEKMLEEWEL 342 (490)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~~ 342 (490)
+.+.+...|..++|+.-|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 44445555555555555555544
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.018 Score=48.37 Aligned_cols=130 Identities=12% Similarity=0.038 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHH----
Q 011236 282 YNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILL---- 357 (490)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---- 357 (490)
.+.++.++...|.+.-....+.+.+...+..++.....+++.-.+.||.+.|...|+...+..-..|..+++.++.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3444444444555555555555555554444445555555555555555555555555444332333333332222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 358 -GYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 358 -~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
.|.-.+++.+|...+.+....+.. |+..-|.-.-+..-.|+..+|++.++.|++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 233345555555555555554433 333333333333334555556666655555
No 190
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.60 E-value=0.001 Score=54.20 Aligned_cols=88 Identities=14% Similarity=0.157 Sum_probs=60.2
Q ss_pred CChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhc----------------CCHHHHHH
Q 011236 312 QLNRDYITMLGSLVK-----IGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQK----------------GMIEKADA 370 (490)
Q Consensus 312 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~A~~ 370 (490)
.+..+|..+++.+.+ .|.++=....+..|.+-|+.-|..+|+.|++.+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 444455555555543 345555555566666666666666666666664331 24577899
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 011236 371 VLKEIVKKGKTPTPNSWSIIAAGYADKNN 399 (490)
Q Consensus 371 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 399 (490)
++++|...|+.||..++..+++.|.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999999987765
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.58 E-value=0.00034 Score=46.29 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=35.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 356 LLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
...+.+.|++++|...|+++++..+. +...+..+..++...|++++|...|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566666666666666666666533 555666666666666666666666666665
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.57 E-value=0.0064 Score=45.50 Aligned_cols=91 Identities=19% Similarity=0.092 Sum_probs=41.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC--chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcc
Q 011236 322 GSLVKIGELEEAEKMLEEWELSCYCYD--FRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTP--TPNSWSIIAAGYADK 397 (490)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~ 397 (490)
.++-..|+.++|..+|++....|.... ...+-.+...|...|++++|..+|++.....+.+ +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 334445555555555555555544332 1233334444555555555555555555432110 111122223344555
Q ss_pred CCHHHHHHHHHHHHH
Q 011236 398 NNMEKAFECMKEALA 412 (490)
Q Consensus 398 ~~~~~a~~~~~~~~~ 412 (490)
|+.++|++.+-..+.
T Consensus 89 gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 89 GRPKEALEWLLEALA 103 (120)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555544443
No 193
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.56 E-value=0.0069 Score=58.40 Aligned_cols=139 Identities=14% Similarity=0.030 Sum_probs=101.2
Q ss_pred cCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHhc--------CCHHHHHHHHHH
Q 011236 309 CKKQLNRDYITMLGSLVKI-----GELEEAEKMLEEWELSCYCYDF-RVPNIILLGYSQK--------GMIEKADAVLKE 374 (490)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~ 374 (490)
....+...|...+++.... ++.+.|..+|++..+. .|+- ..|..+..+|... ++...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3446778888888876542 2377899999999985 4553 4455444444332 123344444444
Q ss_pred HHHc-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 011236 375 IVKK-GKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIK 453 (490)
Q Consensus 375 m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 453 (490)
.... ....+...|..+.......|++++|...++++++ +.|+...|..+...+...|+.++|...++++...
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-------L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID-------LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4342 1233567788887777788999999999999998 5588889999999999999999999999999999
Q ss_pred ccc
Q 011236 454 VQK 456 (490)
Q Consensus 454 ~~~ 456 (490)
.|.
T Consensus 483 ~P~ 485 (517)
T PRK10153 483 RPG 485 (517)
T ss_pred CCC
Confidence 888
No 194
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.55 E-value=0.0069 Score=47.87 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=57.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHH
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVS 428 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~ 428 (490)
+...++..+...|++++|..+++.+....+- |...|..+|.+|...|+...|.+.|+++.....+..|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 3455677788889999999999999888655 7888999999999999999999999888777666678888886643
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.55 E-value=0.00035 Score=46.91 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=40.2
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHH
Q 011236 349 FRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKN-NMEKAFECMKEALA 412 (490)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 412 (490)
..+|..+...+...|++++|+..|++.++.++. +...|..+..+|...| ++++|++.++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345556666666666666666666666666543 5556666666666666 56666666666665
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.54 E-value=0.00038 Score=46.53 Aligned_cols=51 Identities=18% Similarity=0.358 Sum_probs=26.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 361 QKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
..|++++|..+|+++.+..+. +...+..+..+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555554433 444455555555555555555555555544
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.54 E-value=0.00051 Score=46.09 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCC-CHHHHHHHHHHHHhccc
Q 011236 383 TPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNR-DVEEVEAFVSSLKIKVQ 455 (490)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 455 (490)
++.+|..+...+...|++++|+..|+++++ +.|+. ..|..+..++...| ++++|.+.+++..+..|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~-------~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE-------LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH-------HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 567899999999999999999999999998 33544 78888889999999 79999999999887665
No 198
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.53 E-value=0.018 Score=55.07 Aligned_cols=202 Identities=10% Similarity=0.085 Sum_probs=114.4
Q ss_pred CCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHC-CCCC--------CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC
Q 011236 169 FGSALNYNGIMCLYTNTGQHEKIPDVLLDMKEN-GVPP--------DNFSYRICINSYGARSELSSMENVLQEMESQSHI 239 (490)
Q Consensus 169 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p--------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 239 (490)
.|.+..|..|.......-.++-|...|-+.... |++. +...-.+=+.+| -|.+++|+++|-+|. +.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~d-rrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDAD-RRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccc-hhhh
Confidence 356666666666555555555555555444321 2210 111111122222 478888888888886 5554
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChh
Q 011236 240 SMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSK----DALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNR 315 (490)
Q Consensus 240 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 315 (490)
.|..+.+.|++-...++++. |.... -..+|+.+...++....|++|.++|..-..
T Consensus 766 ---------Aielr~klgDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-------- 824 (1189)
T KOG2041|consen 766 ---------AIELRKKLGDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-------- 824 (1189)
T ss_pred ---------hHHHHHhhhhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 67778888888887777765 22101 125678888888888888888887763211
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 011236 316 DYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYA 395 (490)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 395 (490)
....+.++-+..++++-+.+... ++-+....-.+.+++.+.|.-++|.+.+-+-. . | ...+..|.
T Consensus 825 -~e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv 889 (1189)
T KOG2041|consen 825 -TENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCV 889 (1189)
T ss_pred -hHhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHH
Confidence 12244455555555554444333 34455566667777777777777766553321 1 1 12345566
Q ss_pred ccCCHHHHHHHHHH
Q 011236 396 DKNNMEKAFECMKE 409 (490)
Q Consensus 396 ~~~~~~~a~~~~~~ 409 (490)
..++|.+|.++-++
T Consensus 890 ~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666554
No 199
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.46 E-value=0.077 Score=47.72 Aligned_cols=105 Identities=13% Similarity=0.056 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh
Q 011236 282 YNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQ 361 (490)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (490)
.+..+.-+...|+...|.++-. ....|+...|-..+.+++..++|++-.++-.. +-++.-|-.++.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k----~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKK----EFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH----HcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3333444445555544444422 22235555555556666666665554443221 1133445555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 011236 362 KGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFEC 406 (490)
Q Consensus 362 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 406 (490)
.|+..+|..+..+ ++ +..-+..|.+.|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHH
Confidence 6655555555544 11 23334455555555555443
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.43 E-value=0.0043 Score=53.94 Aligned_cols=102 Identities=15% Similarity=0.045 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHH
Q 011236 352 PNIILLGYSQKGMIEKADAVLKEIVKKGKTPT--PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSS 429 (490)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 429 (490)
|..-+..+.+.|++++|...|+.+++..+... ...+..+...|...|++++|...|+.++..+| +-......+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcchhHHHHH
Confidence 33333334455667777777777766543211 23556666667777777777777777766332 11112234444
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 430 ILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 430 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
+...+...|+.+.|..+++.+.+..|.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 555566667777777777777666665
No 201
>PRK11906 transcriptional regulator; Provisional
Probab=97.40 E-value=0.01 Score=54.63 Aligned_cols=145 Identities=8% Similarity=-0.078 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHhc-CCCCC-chhHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 011236 329 ELEEAEKMLEEWELS-CYCYD-FRVPNIILLGYSQ---------KGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADK 397 (490)
Q Consensus 329 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 397 (490)
..+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++.++..+.+.. |+.....+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 345667777777621 23443 3334444443322 23456778888888888766 888888888888888
Q ss_pred CCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc---hhhhHHHHHHHHhcC-C
Q 011236 398 NNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK---RNMYHALTEAHIRSG-Q 472 (490)
Q Consensus 398 ~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~l~~~~~~~g-~ 472 (490)
++++.|...|+++.. +.||. .+|......+.-.|+.++|.+.+++..+..|. ..+....++.|+..+ +
T Consensus 352 ~~~~~a~~~f~rA~~-------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~ 424 (458)
T PRK11906 352 GQAKVSHILFEQAKI-------HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLK 424 (458)
T ss_pred cchhhHHHHHHHHhh-------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchh
Confidence 889999999999987 55777 56666666777789999999999999998888 566666777999999 8
Q ss_pred cHHHHHHHH
Q 011236 473 EVDGLLESM 481 (490)
Q Consensus 473 ~a~~~~~~m 481 (490)
+|+.++-+-
T Consensus 425 ~~~~~~~~~ 433 (458)
T PRK11906 425 NNIKLYYKE 433 (458)
T ss_pred hhHHHHhhc
Confidence 888887553
No 202
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.40 E-value=0.09 Score=47.03 Aligned_cols=294 Identities=14% Similarity=0.008 Sum_probs=182.2
Q ss_pred HHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCcchHHHHHHH--HHhcCCcCcHHHHHHHHHHCCCCCCHHH--HHH
Q 011236 139 LYGALLNCYV--REGLVDESLSLMQKMKEMGSFGSALNYNGIMCL--YTNTGQHEKIPDVLLDMKENGVPPDNFS--YRI 212 (490)
Q Consensus 139 ~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ 212 (490)
-|.+|-.++. ..|+-..|.++-.+.... +.-|....-.|+.+ -.-.|+++.|.+-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 3555544443 357777777766654422 22244444445443 34568999999999999863 33322 233
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChh--hHHHHHHHHH
Q 011236 213 CINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDAL--GYNHLISHYA 290 (490)
Q Consensus 213 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 290 (490)
|.-..-+.|+.+.|..+-+..- ..-. .-.......+...|..|+|+.|+++++.-.......++.. .-..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa-~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAA-EKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHH-hhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 3334456888888888888776 3333 2244566788899999999999999988765544324432 2222333221
Q ss_pred h---cCChhHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHH
Q 011236 291 S---LGNKDEMMKFWGLQKIKCKKQLN-RDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIE 366 (490)
Q Consensus 291 ~---~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 366 (490)
. ..+...|...-.+..+. .|+. ..-.....++.+.|+..++-.+++.+-+....|+. + ++..+.+.|+.
T Consensus 238 ~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt- 310 (531)
T COG3898 238 MSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT- 310 (531)
T ss_pred HHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc-
Confidence 1 23444555544333332 2333 33455567888999999999999999887555553 2 23334555553
Q ss_pred HHHHHHHHHHHc-CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHc-CCCHHHH
Q 011236 367 KADAVLKEIVKK-GKTP-TPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGD-NRDVEEV 443 (490)
Q Consensus 367 ~A~~~~~~m~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a 443 (490)
++.-+++.... .++| +..+...+..+-...|++..|..--+.+.. ..|....|..|.+.-.. .||..++
T Consensus 311 -a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-------~~pres~~lLlAdIeeAetGDqg~v 382 (531)
T COG3898 311 -ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-------EAPRESAYLLLADIEEAETGDQGKV 382 (531)
T ss_pred -HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-------hCchhhHHHHHHHHHhhccCchHHH
Confidence 33333333221 1233 456677777888889999888877777665 56888888888876554 4999999
Q ss_pred HHHHHHHHhc
Q 011236 444 EAFVSSLKIK 453 (490)
Q Consensus 444 ~~~~~~~~~~ 453 (490)
...+.+..+.
T Consensus 383 R~wlAqav~A 392 (531)
T COG3898 383 RQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhcC
Confidence 9998887764
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.013 Score=50.49 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=87.1
Q ss_pred HHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 011236 266 LKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKI---GELEEAEKMLEEWEL 342 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 342 (490)
++.-....+ .|...|-.|...|...|+.+.|..-|.......+ ++...+..+..++... ....++..+|+++..
T Consensus 145 Le~~L~~nP--~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 145 LETHLQQNP--GDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHhCC--CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 333333354 5888899999999999999999999988877766 6666666666665543 346678888998888
Q ss_pred cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011236 343 SCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAA 392 (490)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 392 (490)
. -+-|+.....|...+...|++.+|...|+.|.+..+. ...+..+|.
T Consensus 222 ~-D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~--~~~rr~~ie 268 (287)
T COG4235 222 L-DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA--DDPRRSLIE 268 (287)
T ss_pred c-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC--CCchHHHHH
Confidence 6 2336667777888888999999999999999887533 333444443
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.35 E-value=0.052 Score=43.18 Aligned_cols=134 Identities=13% Similarity=0.022 Sum_probs=79.2
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhH
Q 011236 203 VPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGY 282 (490)
Q Consensus 203 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 282 (490)
+.|++..--.|..+....|+..+|...|++.. ..-..-|....-.+.++....+++..|...++++.+..+...++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34565555566677777777777777777765 43344455555566666666777777777777665544433344455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011236 283 NHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEE 339 (490)
Q Consensus 283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 339 (490)
..+...+...|++..|..-|+......+.|....+ ....+.+.|+.+++..-+..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHHHH
Confidence 56667777777777777777766665443333332 22334455655554443333
No 205
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.29 E-value=0.022 Score=42.63 Aligned_cols=90 Identities=20% Similarity=0.160 Sum_probs=40.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHhcCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHhc
Q 011236 287 SHYASLGNKDEMMKFWGLQKIKCKKQL--NRDYITMLGSLVKIGELEEAEKMLEEWELSCYCY--DFRVPNIILLGYSQK 362 (490)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 362 (490)
.++-..|+.++|+.+|++....+.... ...+..+...+...|++++|..++++....-..+ +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344445555555555555554433211 1234444455555555555555555554431110 111112223344555
Q ss_pred CCHHHHHHHHHHHH
Q 011236 363 GMIEKADAVLKEIV 376 (490)
Q Consensus 363 g~~~~A~~~~~~m~ 376 (490)
|+.++|+..+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554433
No 206
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.28 E-value=0.0015 Score=43.08 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=26.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 011236 251 NYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIK 308 (490)
Q Consensus 251 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (490)
..+...|++++|+..|+++.+..+ .+...+..+..++...|++++|...|++....
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDP--DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCST--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445555555555555544443 34444445555555555555555555544433
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.046 Score=46.00 Aligned_cols=134 Identities=9% Similarity=-0.059 Sum_probs=101.1
Q ss_pred hHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHH-----H
Q 011236 174 NYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYS-----T 248 (490)
Q Consensus 174 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~ 248 (490)
.-+.++.++.-.|.+.-...++++.++...+.++.....|.+.-.+.||.+.|...|++.+ +..-..+..+.+ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve-k~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE-KVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHhhhhccchhHHHHhh
Confidence 4466777777888888889999999888777788888889999899999999999999776 322223333333 3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC
Q 011236 249 VANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCK 310 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 310 (490)
....|.-.+++..|...|+++....+ .|+...|.-.-+..-.|+..+|++.++.+....+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34456677888999999988877665 4666666666666668899999999998887765
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.23 E-value=0.0026 Score=43.18 Aligned_cols=55 Identities=25% Similarity=0.259 Sum_probs=36.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 357 LGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
..|.+.+++++|.++++.++..++. +...|......+.+.|++++|.+.|+.+++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4456666677777777666666544 555666666666667777777777766666
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.21 E-value=0.0017 Score=44.76 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcC-CCcc-hhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 385 NSWSIIAAGYADKNNMEKAFECMKEALAVHEENKF-WRPK-PSLVSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
.+|+.+...|...|++++|+..|+++++.. ...| -.|+ ..++..+...+...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457777777777788888887777777642 1122 2232 35667777777778888888877776654
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.19 E-value=0.038 Score=52.51 Aligned_cols=37 Identities=11% Similarity=0.303 Sum_probs=22.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 011236 194 VLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEM 233 (490)
Q Consensus 194 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 233 (490)
-+++++++|-.|+... +...++-.|++.+|.++|.+-
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 3456666666666543 334455567777777777654
No 211
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.08 Score=52.06 Aligned_cols=89 Identities=18% Similarity=0.227 Sum_probs=48.2
Q ss_pred CHHHHHHHHHH----HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHH
Q 011236 68 SELELQRVIRQ----LRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGA 142 (490)
Q Consensus 68 ~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~ 142 (490)
+..+...+... +-+.|++++|..-|-+-+..- .| ..++.-+.....+.+-..+++.+.+.+. +..--+.
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttl 436 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTL 436 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHH
Confidence 44444444433 345677777766655433321 11 2334444555556666666666666653 4444556
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 011236 143 LLNCYVREGLVDESLSLMQK 162 (490)
Q Consensus 143 li~~~~~~g~~~~a~~~~~~ 162 (490)
|+.+|.+.++.++-.++.+.
T Consensus 437 LLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 437 LLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHHHHHHhcchHHHHHHHhc
Confidence 67777777776665554443
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.14 E-value=0.0094 Score=51.88 Aligned_cols=95 Identities=11% Similarity=0.021 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCC----hhHHHHHHH
Q 011236 72 LQRVIRQLRSRKRFKHALQVSEWMSGQGL--AFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKV----DKLYGALLN 145 (490)
Q Consensus 72 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~li~ 145 (490)
|...+..+.+.|++++|+..|+.+.+... +..+..+..+...+...|++++|...|+.+....|+ ..++-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333444556666666665555432 111345555555555556666666655555544331 223333444
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 011236 146 CYVREGLVDESLSLMQKMKEM 166 (490)
Q Consensus 146 ~~~~~g~~~~a~~~~~~m~~~ 166 (490)
.+...|+.++|..+|+++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 455555555555555555544
No 213
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.12 E-value=0.19 Score=45.26 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011236 315 RDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGY 394 (490)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 394 (490)
.+.+..+.-|...|+...|.++-.+.. -|+...|-.-+.+++..++|++-.++... . -.+..|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 455666777788899888888877662 36888899999999999999987775432 1 2457899999999
Q ss_pred hccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 395 ADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
.+.|+..+|..+..++ | +..-+..|.+.|++.+|.+.-.+..+
T Consensus 248 ~~~~~~~eA~~yI~k~-----------~----~~~rv~~y~~~~~~~~A~~~A~~~kd 290 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----------P----DEERVEMYLKCGDYKEAAQEAFKEKD 290 (319)
T ss_pred HHCCCHHHHHHHHHhC-----------C----hHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 9999999998887762 1 14456677888888888776555544
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.10 E-value=0.19 Score=45.75 Aligned_cols=28 Identities=14% Similarity=0.136 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 385 NSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
-.+.+++.++.-.|+.++|.+..++|..
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 3445556666666677777777766665
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.96 E-value=0.0034 Score=49.64 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHH-----CCCCCCHHH
Q 011236 139 LYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKE-----NGVPPDNFS 209 (490)
Q Consensus 139 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 209 (490)
+...++..+...|++++|..+.+.+....+- |...|..+|.++...|+...|.++|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555556666666666666666665433 555666666666666666666666665532 366666554
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.43 Score=46.63 Aligned_cols=324 Identities=16% Similarity=0.089 Sum_probs=169.1
Q ss_pred cCCCCCHHHHH-----HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCH--HHHH-HHHHHccccC
Q 011236 63 EGQKISELELQ-----RVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGL--ESAE-TYFNSLNDED 134 (490)
Q Consensus 63 ~~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~-~~~~~~~~~~ 134 (490)
-|++.+..-|. .+|+.+...+.+..|+++-.++......- ..++......+.+..+. +++. .+=+++...-
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 37777666665 45777888899999999988876543222 56666666666665332 2233 3333333221
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCC--------
Q 011236 135 KVDKLYGALLNCYVREGLVDESLSLMQKMKEMGS----FGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENG-------- 202 (490)
Q Consensus 135 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-------- 202 (490)
....+|..+.+....+|+.+-|..+++.=...+- -.+..-+...+.-+.+.|+.+-...++-.+.+.-
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 2345688888888899999999988764322210 1133345666677778888888877776665420
Q ss_pred ---CCCCHHHHHHHHHH--------HhccCChHHHHHHH--HHH---HhCCCCCCCHHHHHHHHHHHHHcCCHH------
Q 011236 203 ---VPPDNFSYRICINS--------YGARSELSSMENVL--QEM---ESQSHISMDWGTYSTVANYYIIAGLKE------ 260 (490)
Q Consensus 203 ---~~p~~~~~~~li~~--------~~~~g~~~~a~~~~--~~~---~~~~~~~~~~~~~~~li~~~~~~~~~~------ 260 (490)
.+.....|..+++- +...++..++..-| +.. ....+..|+..+ ..+.+.+.....
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~---~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKT---AANAFAKSKEKSFEAKAL 661 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHH---HHHHHhhhhhhhhHHHHH
Confidence 11111222222221 11111111111111 110 000111133222 334444433311
Q ss_pred ----HHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011236 261 ----KAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKM 336 (490)
Q Consensus 261 ----~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 336 (490)
+-+.+.+.+...........+.+--+.-+...|+..+|.++-.+ ...||...|-.-+.+++..+++++-+++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~----FkipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSD----FKIPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHh----cCCcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 11122222222111112233444455555666776776665442 2347777777777777777777765554
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 011236 337 LEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKE 409 (490)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 409 (490)
-+... ++.-|..+..+|.+.|+.++|.+++.+... +.-...+|.+.|++.+|.++--+
T Consensus 738 Akskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 738 AKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHHH
Confidence 44322 234456667777777777777777654322 11455667777777776655433
No 217
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.92 E-value=0.21 Score=42.35 Aligned_cols=183 Identities=15% Similarity=0.056 Sum_probs=92.9
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc---
Q 011236 252 YYIIAGLKEKAIIYLKKCEDIVSKS-KDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKI--- 327 (490)
Q Consensus 252 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 327 (490)
.-.+.|++++|.+.|+.+....+.. -...+.-.++.++.+.++++.|+...++.+...+.-....|..-|.+++.-
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence 3445566666666666666544321 122344445556666677777777766666666533444444444444421
Q ss_pred ----CCHH---HHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 011236 328 ----GELE---EAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNM 400 (490)
Q Consensus 328 ----~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 400 (490)
.|.. .|..-|++++.. . ||. .=...|......+... =..-=..+.+-|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r-y-PnS-------------~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR-Y-PNS-------------RYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH-C-CCC-------------cchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCh
Confidence 1222 223333333332 1 221 1112222222222110 000012345667888888
Q ss_pred HHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 401 EKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
..|..-+++|++.++ ...-....+-.+..+|...|-.++|.+.-+-+....|.
T Consensus 184 ~AA~nR~~~v~e~y~---~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 184 VAAINRFEEVLENYP---DTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHHHHHhccc---cccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 888888888887331 11111234555667788888888888777766665554
No 218
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.87 E-value=0.015 Score=43.97 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=29.3
Q ss_pred cCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc---hhhhHHHHHHHH
Q 011236 418 KFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK---RNMYHALTEAHI 468 (490)
Q Consensus 418 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~l~~~~~ 468 (490)
....|+..+..+++.+|+..|++..|.++++...+..+. ...|..|++-..
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566666666666666666666666666655554433 455555554443
No 219
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.83 E-value=0.015 Score=44.01 Aligned_cols=97 Identities=11% Similarity=0.153 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011236 137 DKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINS 216 (490)
Q Consensus 137 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 216 (490)
..++.++|.++++.|+.+....+++..-.- .++... ..+. --......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI--~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGI--DVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCC--CCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 456677777777777777777766554432 211100 0000 11223466788888888888
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 011236 217 YGARSELSSMENVLQEMESQSHISMDWGTYSTVANYY 253 (490)
Q Consensus 217 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (490)
|+..|++..|.++++......+++.+..+|..|+.-.
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 8888888888888888776677777777777666543
No 220
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.83 E-value=0.14 Score=48.92 Aligned_cols=261 Identities=9% Similarity=0.041 Sum_probs=135.4
Q ss_pred CCCcchHHHHHHHHHhcCCcCcHHHHH---------HHHHHCCCCCCHHHHHHHHHHHhccCChH--HHHHHHHHHHhCC
Q 011236 169 FGSALNYNGIMCLYTNTGQHEKIPDVL---------LDMKENGVPPDNFSYRICINSYGARSELS--SMENVLQEMESQS 237 (490)
Q Consensus 169 ~p~~~~~~~l~~~~~~~~~~~~a~~~~---------~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~ 237 (490)
.|....+.+=+..|...|.+++|.++- +.+-.. ..+.-.++..=.+|.+..+.. +...-+++++ +.
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k-~r 629 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERK-KR 629 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHH-hc
Confidence 344455566666777888888776541 111110 012333444455666655543 3444566776 66
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHH-----HHHHHHHhcCChhHHHHHHHHHHHhcCCC
Q 011236 238 HISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYN-----HLISHYASLGNKDEMMKFWGLQKIKCKKQ 312 (490)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 312 (490)
|-.|+... +...++-.|.+.+|-++|.+--.... -...|+ -..+-+...|..++-..+.++..+-. .
T Consensus 630 ge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enR---AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA--r 701 (1081)
T KOG1538|consen 630 GETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENR---ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA--R 701 (1081)
T ss_pred CCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhh---HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh--h
Confidence 66687665 66677778888888888876311110 011111 12233444455444444433221110 0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHH------HHhcCCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011236 313 LNRDYITMLGSLVKIGELEEAEKMLEE------WELSCYC---YDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPT 383 (490)
Q Consensus 313 ~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 383 (490)
+..-=.+....+...|+.++|..+..+ +.+-+.+ .+..+...+..-+.+...+.-|-++|.+|-+
T Consensus 702 ~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------ 775 (1081)
T KOG1538|consen 702 NIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD------ 775 (1081)
T ss_pred hcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc------
Confidence 000011233334455666655544321 1111111 1333444444445556667778888877754
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhh-----------HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 384 PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSL-----------VSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~-----------~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
..++++.....++|.+|..+-++.-+ +.|+... |...-.+|-++|+..+|.++++++..
T Consensus 776 ---~ksiVqlHve~~~W~eAFalAe~hPe-------~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 776 ---LKSLVQLHVETQRWDEAFALAEKHPE-------FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ---HHHHhhheeecccchHhHhhhhhCcc-------ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 24567778888999999888777544 4455421 33333566666777777777666655
Q ss_pred cccc
Q 011236 453 KVQK 456 (490)
Q Consensus 453 ~~~~ 456 (490)
....
T Consensus 846 nav~ 849 (1081)
T KOG1538|consen 846 NAVA 849 (1081)
T ss_pred hhhh
Confidence 4443
No 221
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.82 E-value=0.0082 Score=40.65 Aligned_cols=57 Identities=11% Similarity=-0.026 Sum_probs=28.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC
Q 011236 78 QLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK 135 (490)
Q Consensus 78 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 135 (490)
.+.+.++++.|+++++.+...+ |.++..+.....++...|++++|.+.|+...+..|
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 3444555555555555555554 23444444444455555555555555555544444
No 222
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.62 E-value=0.56 Score=43.12 Aligned_cols=138 Identities=14% Similarity=0.070 Sum_probs=78.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhh------HHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHH--HHhc
Q 011236 79 LRSRKRFKHALQVSEWMSGQGLAFSVHD------HAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNC--YVRE 150 (490)
Q Consensus 79 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~--~~~~ 150 (490)
+.+.+++++|..+|.++.+..- .++.. -+.++++|. .++++.....+....+..|. ..|-.|..+ +-+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~-s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGK-SAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHh
Confidence 3467788888888887766532 22222 223444443 35556555555555554442 234444433 2456
Q ss_pred CChhHHHHHHHHHHhc--CCCC------------CcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCC----CCHHHHHH
Q 011236 151 GLVDESLSLMQKMKEM--GSFG------------SALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVP----PDNFSYRI 212 (490)
Q Consensus 151 g~~~~a~~~~~~m~~~--~~~p------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~~~~~ 212 (490)
+.+++|++.+..-.+. +..| |...=+..+.++...|.+.++..+++++...=++ -+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 7788888777766554 2221 1111255666777888888888887777654222 46677776
Q ss_pred HHHHHhc
Q 011236 213 CINSYGA 219 (490)
Q Consensus 213 li~~~~~ 219 (490)
++-.+++
T Consensus 173 ~vlmlsr 179 (549)
T PF07079_consen 173 AVLMLSR 179 (549)
T ss_pred HHHHHhH
Confidence 5555543
No 223
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.61 E-value=0.7 Score=44.14 Aligned_cols=132 Identities=12% Similarity=0.059 Sum_probs=84.5
Q ss_pred CCCCcccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 011236 32 KPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQL 111 (490)
Q Consensus 32 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 111 (490)
....|..|+....+.... .++..+++.+... .|.--.-|......=.+.|..+.+..+|++-+..= +.+...+...+
T Consensus 44 ~f~~wt~li~~~~~~~~~-~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai-p~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDV-DALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAI-PLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHH-HHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-hhHHHHHHHHH
Confidence 344565666555544443 4455555555432 22222334555555567788888888888877653 45666665555
Q ss_pred HHHH-hhcCHHHHHHHHHHcccc-C---CChhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 011236 112 DLIG-KVRGLESAETYFNSLNDE-D---KVDKLYGALLNCYVREGLVDESLSLMQKMKEM 166 (490)
Q Consensus 112 ~~~~-~~~~~~~A~~~~~~~~~~-~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 166 (490)
..++ ..|+.+.....|+..... | .+...|...|.--..++++.....++++.++.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 4444 457777788888876653 2 35667888888888888888888888888875
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.58 E-value=0.055 Score=40.18 Aligned_cols=94 Identities=10% Similarity=-0.021 Sum_probs=64.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCC--cchhhHHHHHHHHH
Q 011236 358 GYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWR--PKPSLVSSILDWLG 435 (490)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--p~~~~~~~l~~~~~ 435 (490)
+....|+.+.|++.|.+.+..-++ ....||.-.+++.-+|+.++|++-+++++++. |-+ --...|..-...|.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHHH
Confidence 356678888888888888776444 67778888888888888888888888887732 211 11123333344566
Q ss_pred cCCCHHHHHHHHHHHHhcccc
Q 011236 436 DNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 436 ~~g~~~~a~~~~~~~~~~~~~ 456 (490)
..|+-+.|..-|+..-+.|.+
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCH
Confidence 678888888888887777765
No 225
>PRK15331 chaperone protein SicA; Provisional
Probab=96.57 E-value=0.091 Score=41.29 Aligned_cols=85 Identities=13% Similarity=-0.096 Sum_probs=55.6
Q ss_pred HhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHH
Q 011236 115 GKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPD 193 (490)
Q Consensus 115 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 193 (490)
-..|++++|..+|.-+.-.+| +..-|..|..++-..+++++|+..|......+.. |+..+--...++...|+.+.|..
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHHH
Confidence 356777777777777666655 5555666666666677777777777766555433 55555556666677777777777
Q ss_pred HHHHHHH
Q 011236 194 VLLDMKE 200 (490)
Q Consensus 194 ~~~~m~~ 200 (490)
.|.....
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 7766665
No 226
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.52 E-value=0.42 Score=40.59 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=42.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcccc----hhhhHHHHHHHHhcC--CcHHHHHHHH
Q 011236 429 SILDWLGDNRDVEEVEAFVSSLKIKVQK----RNMYHALTEAHIRSG--QEVDGLLESM 481 (490)
Q Consensus 429 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~l~~~~~~~g--~~a~~~~~~m 481 (490)
.+.+.|.+.|.+..|..-++.|.+.-+. ...+-.+..+|.+.| ++|...-+-+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 4567889999999999999999998766 667888899999999 5555544433
No 227
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.43 E-value=0.028 Score=47.75 Aligned_cols=99 Identities=21% Similarity=0.273 Sum_probs=61.9
Q ss_pred HHHHHHccccCCChhHHHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC-----------
Q 011236 124 ETYFNSLNDEDKVDKLYGALLNCYVRE-----GLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQ----------- 187 (490)
Q Consensus 124 ~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----------- 187 (490)
...|........|-.+|-+.+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+..-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 344555554445666677666666543 4566666778888999999999999998887654321
Q ss_pred -----cCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 011236 188 -----HEKIPDVLLDMKENGVPPDNFSYRICINSYGARSE 222 (490)
Q Consensus 188 -----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 222 (490)
-+-+.+++++|...|+.||..+-..|++++++.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 12345555666666666666666666666555443
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.42 E-value=0.016 Score=39.86 Aligned_cols=63 Identities=27% Similarity=0.399 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc----cCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011236 244 GTYSTVANYYIIAGLKEKAIIYLKKCEDIVS----KSKD-ALGYNHLISHYASLGNKDEMMKFWGLQK 306 (490)
Q Consensus 244 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 306 (490)
.+|+.+...|...|++++|+..|++..+... ..++ ..++..+..++...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666666666665543210 0011 3445555556666666666666665443
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.54 Score=40.77 Aligned_cols=49 Identities=10% Similarity=0.192 Sum_probs=22.3
Q ss_pred hhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011236 116 KVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMK 164 (490)
Q Consensus 116 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 164 (490)
..|++.+|..+|.......| +..+--.++.+|...|+++.|..++..+.
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 44444444444444444333 23334444444444555555555444443
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=0.32 Score=40.71 Aligned_cols=209 Identities=15% Similarity=0.131 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHh
Q 011236 70 LELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVR 149 (490)
Q Consensus 70 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~ 149 (490)
..|..-..+|....++++|...+.+..+.. ..+...|. ...-++.|.-+.+++....--+..|+.-...|.+
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345555566667777777777666655321 11111111 1123344444444444432223446666677777
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHC---C--CCCCHHHHHHHHHHHhccCChH
Q 011236 150 EGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKEN---G--VPPDNFSYRICINSYGARSELS 224 (490)
Q Consensus 150 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~--~~p~~~~~~~li~~~~~~g~~~ 224 (490)
+|..+.|-..+++.-.. ..+-++++|+++|++...- + .+.-...|..+-+.+.+...++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 77777777766665432 1334555666666554321 1 0111223445555666666776
Q ss_pred HHHHHHHHHHh---CCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc--CCChhhHHHHHHHHHhcCChhHH
Q 011236 225 SMENVLQEMES---QSHISMD-WGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSK--SKDALGYNHLISHYASLGNKDEM 298 (490)
Q Consensus 225 ~a~~~~~~~~~---~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 298 (490)
+|-..+.+-.. +..--++ -..|...|-.|....++..|...++.--+.+.. ..+..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 66555443320 0000011 123444555666667777777777764332211 03455666666665 45666666
Q ss_pred HHHHH
Q 011236 299 MKFWG 303 (490)
Q Consensus 299 ~~~~~ 303 (490)
..++.
T Consensus 247 ~kvl~ 251 (308)
T KOG1585|consen 247 KKVLS 251 (308)
T ss_pred HHHHc
Confidence 55543
No 231
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.38 E-value=1.5 Score=45.46 Aligned_cols=329 Identities=16% Similarity=0.126 Sum_probs=167.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH-hCCC--CCChhhHHHHHHHHHh-hcCHHHHHHHHHHccccCCChhHHHHHH----H
Q 011236 74 RVIRQLRSRKRFKHALQVSEWMS-GQGL--AFSVHDHAVQLDLIGK-VRGLESAETYFNSLNDEDKVDKLYGALL----N 145 (490)
Q Consensus 74 ~ll~~~~~~~~~~~a~~~~~~~~-~~~~--~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~li----~ 145 (490)
.-+..++..+++.+|..+.++-. ..++ ..++..+..-+.++.+ .++.+--..++..+...+.+...|.... .
T Consensus 682 a~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~ 761 (1265)
T KOG1920|consen 682 AKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQ 761 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccccccce
Confidence 34444556666776655544321 1122 3345566655666654 4555666666666665443333332211 1
Q ss_pred HHHhc----CChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC--CcCcHHHHHHHHHHCCCCCCHHH----------
Q 011236 146 CYVRE----GLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTG--QHEKIPDVLLDMKENGVPPDNFS---------- 209 (490)
Q Consensus 146 ~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~---------- 209 (490)
.|... ..++...+.+.....+ ..|+ .-.-.+|..|++.+ ..+.++....+.......++...
T Consensus 762 ~~~~r~~~d~kv~~vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvd 839 (1265)
T KOG1920|consen 762 VYMSRDPYDNKVNSVCDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVD 839 (1265)
T ss_pred eEEeccchhhHHHHHHHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhcc
Confidence 11111 2233344444443333 2344 33456777777776 55666666655553211111110
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHhhhhccC
Q 011236 210 YRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYI-------------IAGLKEKAIIYLKKCEDIVSKS 276 (490)
Q Consensus 210 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------------~~~~~~~a~~~~~~~~~~~~~~ 276 (490)
-+.+.++..-.-|++.|..+-+.-+ .|+.-|-.+++-+- ..++++.|+.-+..+
T Consensus 840 vn~lfn~ALgtYDl~Lal~VAq~Sq------kDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~------- 906 (1265)
T KOG1920|consen 840 VNELFNSALGTYDLDLALLVAQKSQ------KDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSEC------- 906 (1265)
T ss_pred HHHHHHhhhcccchHHHHHHHHHhc------cChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHc-------
Confidence 1122222222224444444433332 11122222222111 124555555555543
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHH----HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhH
Q 011236 277 KDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYIT----MLGSLVKIGELEEAEKMLEEWELSCYCYDFRVP 352 (490)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 352 (490)
+...|.-.+..--+.|-+.+|+.++. |+...+.. ....+...+.+++|--.|+..-+.
T Consensus 907 -~~~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl--------- 968 (1265)
T KOG1920|consen 907 -GETYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL--------- 968 (1265)
T ss_pred -CccccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------
Confidence 22334455555556777777777776 56655444 444455567777777666654221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHH
Q 011236 353 NIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNS--WSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSI 430 (490)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l 430 (490)
.--+.+|..+|++.+|+.+..++... -|... -..|+.-+...+++-+|-++..+... - ..-.
T Consensus 969 ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---------d----~~~a 1032 (1265)
T KOG1920|consen 969 EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS---------D----PEEA 1032 (1265)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---------C----HHHH
Confidence 23567788888888888888776532 12222 25677778888998889888888765 1 1123
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 011236 431 LDWLGDNRDVEEVEAFVSSLK 451 (490)
Q Consensus 431 ~~~~~~~g~~~~a~~~~~~~~ 451 (490)
+..+++...|++|.++.....
T Consensus 1033 v~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1033 VALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHhhHhHHHHHHHHHHhcc
Confidence 334455556777776665544
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.34 E-value=0.091 Score=48.53 Aligned_cols=63 Identities=14% Similarity=-0.008 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011236 314 NRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDF----RVPNIILLGYSQKGMIEKADAVLKEIVKK 378 (490)
Q Consensus 314 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 378 (490)
...++.+..+|.+.|++++|...|++.++. .|+. .+|..+..+|...|+.++|+..+++.++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344556666666666666666666665553 3332 23555666666666666666666666553
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.62 Score=40.43 Aligned_cols=161 Identities=12% Similarity=0.082 Sum_probs=103.9
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCC
Q 011236 57 LDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKV 136 (490)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 136 (490)
+++|...-.++....-..-...+...|++.+|..+|....... +-+......+..++...|+.+.|..++..++....+
T Consensus 122 lr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~ 200 (304)
T COG3118 122 LRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD 200 (304)
T ss_pred HHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh
Confidence 4455544344333333344455678899999999999998886 345778888999999999999999999999876543
Q ss_pred hhH--HHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCCcCcHHHHHHHHHHC--CCCCCHHHHH
Q 011236 137 DKL--YGALLNCYVREGLVDESLSLMQKMKEMGSFG-SALNYNGIMCLYTNTGQHEKIPDVLLDMKEN--GVPPDNFSYR 211 (490)
Q Consensus 137 ~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~ 211 (490)
... ...-|..+.+.....+...+-.+.-.. | |...-..+...+...|+.+.|.+.+-.+.+. |. -|...-.
T Consensus 201 ~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk 276 (304)
T COG3118 201 KAAHGLQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARK 276 (304)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHH
Confidence 222 223345555555555555555554443 3 5555556667777788888887766666543 33 2444455
Q ss_pred HHHHHHhccCC
Q 011236 212 ICINSYGARSE 222 (490)
Q Consensus 212 ~li~~~~~~g~ 222 (490)
.++..+...|.
T Consensus 277 ~lle~f~~~g~ 287 (304)
T COG3118 277 TLLELFEAFGP 287 (304)
T ss_pred HHHHHHHhcCC
Confidence 55555555553
No 234
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.33 E-value=0.7 Score=41.03 Aligned_cols=228 Identities=14% Similarity=0.065 Sum_probs=121.1
Q ss_pred hccCChHHHHHHHHHHHhCC-CCCCCHHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhh----c---cCCCh----
Q 011236 218 GARSELSSMENVLQEMESQS-HISMDWGT-----YSTVANYYIIAG-LKEKAIIYLKKCEDIV----S---KSKDA---- 279 (490)
Q Consensus 218 ~~~g~~~~a~~~~~~~~~~~-~~~~~~~~-----~~~li~~~~~~~-~~~~a~~~~~~~~~~~----~---~~~~~---- 279 (490)
.+.|+.+.|..++.+..... ...|+..- +-.+.......+ +++.|...+++..+.. . ..++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35677777777777766222 12222111 111222333445 7777766666554331 1 00222
Q ss_pred -hhHHHHHHHHHhcCChh---HHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHH
Q 011236 280 -LGYNHLISHYASLGNKD---EMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNII 355 (490)
Q Consensus 280 -~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 355 (490)
.+...++.+|...+..+ +|.++++.+....+ -.+..+..-+..+.+.++.+.+.+++..|... +......+...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 45667778887777654 46666665544444 23455556677777789999999999999987 33234455655
Q ss_pred HHHHHh--cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH----HHHhccCC------HHHHHHHHHHHHHhhhcCcCCCc
Q 011236 356 LLGYSQ--KGMIEKADAVLKEIVKKGKTPTPN-SWSIIA----AGYADKNN------MEKAFECMKEALAVHEENKFWRP 422 (490)
Q Consensus 356 ~~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~----~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~p 422 (490)
+..+.. ......|...+..++...+.|... ....++ -...+.++ .+...+++....+ ..+.+.
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~----~~~~~l 237 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEH----SLGKQL 237 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHH----HhcCCC
Confidence 665522 233456777777776655555443 111111 11122211 3444444543322 122333
Q ss_pred chhh---HHHHH----HHHHcCCCHHHHHHHHHHHH
Q 011236 423 KPSL---VSSIL----DWLGDNRDVEEVEAFVSSLK 451 (490)
Q Consensus 423 ~~~~---~~~l~----~~~~~~g~~~~a~~~~~~~~ 451 (490)
+..+ ..+++ ..+.+.++++.|.++|+-..
T Consensus 238 s~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 238 SAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3333 22333 33567899999999988544
No 235
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.33 E-value=0.35 Score=38.16 Aligned_cols=132 Identities=12% Similarity=0.110 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHH---
Q 011236 68 SELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSV-HDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGAL--- 143 (490)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l--- 143 (490)
+...|..-++ +.+.+..++|+.-|..+.+.|..--| -............|+...|...|+++....|.+....-+
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4444444444 23445566666666666666542111 111222334445556666666666555443322222111
Q ss_pred --HHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHH
Q 011236 144 --LNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKE 200 (490)
Q Consensus 144 --i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 200 (490)
.-.+...|.++....-++-+...+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 112334455555544444443333222222233444444455555555555555444
No 236
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.33 E-value=0.36 Score=37.65 Aligned_cols=85 Identities=15% Similarity=0.024 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 011236 318 ITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADK 397 (490)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 397 (490)
..++..+.+.+.......+++.+...+. .+....+.++..|++.+ ..+....++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3444555555556666666666555542 44455566666665543 2223333321 11233344455555556
Q ss_pred CCHHHHHHHHHHH
Q 011236 398 NNMEKAFECMKEA 410 (490)
Q Consensus 398 ~~~~~a~~~~~~~ 410 (490)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6666666655554
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.27 E-value=0.33 Score=46.58 Aligned_cols=164 Identities=12% Similarity=0.001 Sum_probs=98.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHH-----HHHHHHHHHHH----cCCHHHHHHHHHHHhhhhccCCChh
Q 011236 210 YRICINSYGARSELSSMENVLQEMESQSHISMDWG-----TYSTVANYYII----AGLKEKAIIYLKKCEDIVSKSKDAL 280 (490)
Q Consensus 210 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 280 (490)
+..++...+-.||-+.+++.+.+.....++.-... .|...+..++. ..+.+.|.++++.+.... |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 34566667778888888888888764444432222 23333333332 446778888888887765 4444
Q ss_pred hHHH-HHHHHHhcCChhHHHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH
Q 011236 281 GYNH-LISHYASLGNKDEMMKFWGLQKIKCK---KQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIIL 356 (490)
Q Consensus 281 ~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (490)
.|.. -.+.+...|++++|++.|+....... ......+--+...+.-.++|++|.+.|..+.+.. ..+..+|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 4433 34556678888888888886553211 2223334556666777888888888888887752 22333443332
Q ss_pred H-HHHhcCCH-------HHHHHHHHHHHH
Q 011236 357 L-GYSQKGMI-------EKADAVLKEIVK 377 (490)
Q Consensus 357 ~-~~~~~g~~-------~~A~~~~~~m~~ 377 (490)
- ++...|+. ++|..+|.+...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 2 24456666 777777776643
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.27 E-value=0.89 Score=41.57 Aligned_cols=35 Identities=11% Similarity=-0.153 Sum_probs=29.9
Q ss_pred cchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 422 PKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 422 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
.+-..+..++.++.-.|+.+.|.+..++|.+..|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 44456678888999999999999999999998876
No 239
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.25 E-value=0.95 Score=41.67 Aligned_cols=405 Identities=13% Similarity=0.069 Sum_probs=232.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHH
Q 011236 64 GQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGAL 143 (490)
Q Consensus 64 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l 143 (490)
..+.|+.+|-.|+.-+...+..++..+++++|...- +.-+..+...+..-....++.....+|.+......+...|...
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lY 115 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLY 115 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHH
Confidence 457799999999999999999999999999998764 5677788888887778899999999999988877778889888
Q ss_pred HHHHHhcCChh------HHHHHHHHHHh-cCCCCCc-chHHHHHHHH---HhcCCcC------cHHHHHHHHHHCCCCCC
Q 011236 144 LNCYVREGLVD------ESLSLMQKMKE-MGSFGSA-LNYNGIMCLY---TNTGQHE------KIPDVLLDMKENGVPPD 206 (490)
Q Consensus 144 i~~~~~~g~~~------~a~~~~~~m~~-~~~~p~~-~~~~~l~~~~---~~~~~~~------~a~~~~~~m~~~~~~p~ 206 (490)
+.---+.++.- ...+.|+-... .++.|-. ..|+..+..+ -..|.|+ .....+.+|+...+..=
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 87655544221 23344544433 3555543 3455555443 2344444 45556777766432211
Q ss_pred HHHHHH------HHHHH-hc--cC----ChHHHHHHHHHHHh-CCCCC----CCHHHHHH-----------HHHHHHH--
Q 011236 207 NFSYRI------CINSY-GA--RS----ELSSMENVLQEMES-QSHIS----MDWGTYST-----------VANYYII-- 255 (490)
Q Consensus 207 ~~~~~~------li~~~-~~--~g----~~~~a~~~~~~~~~-~~~~~----~~~~~~~~-----------li~~~~~-- 255 (490)
...|+. =++-. ++ .| -+-.|...++++.. ..|+. .+..+++- .|.-=..
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 112221 11111 00 11 13345555555541 11211 12222222 1111000
Q ss_pred ---cCC--HHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 011236 256 ---AGL--KEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGEL 330 (490)
Q Consensus 256 ---~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 330 (490)
.|+ ....--++++.....+ .....|----..+...++-+.|+.......... |.. -.-+...|.-.++.
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y~~--~~~evw~dys~Y~~~isd~q~al~tv~rg~~~s--psL--~~~lse~yel~nd~ 349 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDYFY--YAEEVWFDYSEYLIGISDKQKALKTVERGIEMS--PSL--TMFLSEYYELVNDE 349 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHhhccHHHHHHHHHHhcccCC--Cch--heeHHHHHhhcccH
Confidence 011 1112223333333222 233444444444455566666666554332221 110 00111111112222
Q ss_pred HHHHHHHHHHHh--------------cC---------------CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C
Q 011236 331 EEAEKMLEEWEL--------------SC---------------YCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKG-K 380 (490)
Q Consensus 331 ~~a~~~~~~~~~--------------~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~ 380 (490)
+.....|+...+ ++ ...-..+|..++..-.+..-++.|..+|-+..+.| +
T Consensus 350 e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~ 429 (660)
T COG5107 350 EAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV 429 (660)
T ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC
Confidence 222222211100 00 11123456777777788888999999999999988 5
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhH-HHHHHHHHcCCCHHHHHHHHHHHHhcccc---
Q 011236 381 TPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLV-SSILDWLGDNRDVEEVEAFVSSLKIKVQK--- 456 (490)
Q Consensus 381 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--- 456 (490)
.+++..+++++..++ .|+...|..+|+--+. .-||...| .-.+..+.+.++-+.|..+|+.....-..
T Consensus 430 ~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~-------~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~ 501 (660)
T COG5107 430 GHHVYIYCAFIEYYA-TGDRATAYNIFELGLL-------KFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQL 501 (660)
T ss_pred CcceeeeHHHHHHHh-cCCcchHHHHHHHHHH-------hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhh
Confidence 688889999998665 5677889999998776 23565444 45666778889999999999965554333
Q ss_pred hhhhHHHHHHHHhcC--CcHHHHHHHHHh
Q 011236 457 RNMYHALTEAHIRSG--QEVDGLLESMKA 483 (490)
Q Consensus 457 ~~~~~~l~~~~~~~g--~~a~~~~~~m~~ 483 (490)
..+|..+|.-=..-| ..|..+=++|.+
T Consensus 502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 502 KRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 678888888877777 556666566554
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.23 E-value=0.067 Score=50.49 Aligned_cols=28 Identities=11% Similarity=0.060 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHH
Q 011236 206 DNFSYRICINSYGARSELSSMENVLQEM 233 (490)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~a~~~~~~~ 233 (490)
+...|..|.....+.|+++-|++.|.+.
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3344555555555555555555555444
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.20 E-value=0.1 Score=44.56 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=70.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHH
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKT--PTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVS 428 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~ 428 (490)
.|+.-+.. .+.|++..|...|...++..+. -....+-.|..++...|++++|..+|..+.+.+|+. .--+..+-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s---~KApdall 219 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS---PKAPDALL 219 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC---CCChHHHH
Confidence 45554443 4466688888888888876543 122346667888888888888888888887744311 11225666
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 429 SILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 429 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
-|.....+.|+.++|..+|+++.+..|.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 6777777888888888888888888776
No 242
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.13 E-value=0.22 Score=38.83 Aligned_cols=125 Identities=12% Similarity=0.168 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 011236 141 GALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGAR 220 (490)
Q Consensus 141 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 220 (490)
..++..+.+.+.......+++.+...+. .+...++.++..|++.+. .+..+.+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4556666666777777777777766653 466667777777765532 233333331 12334444566667667
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHH
Q 011236 221 SELSSMENVLQEMESQSHISMDWGTYSTVANYYIIA-GLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYA 290 (490)
Q Consensus 221 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (490)
+-++++..++.++. . +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~-~---------~~~Al~~~l~~~~d~~~a~~~~~~~-------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDG-N---------FKDAIVTLIEHLGNYEKAIEYFVKQ-------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhc-C---------HHHHHHHHHHcccCHHHHHHHHHhC-------CCHHHHHHHHHHHH
Confidence 77777777776653 1 12233334433 6677777766651 34455666665554
No 243
>PRK15331 chaperone protein SicA; Provisional
Probab=96.13 E-value=0.098 Score=41.13 Aligned_cols=84 Identities=8% Similarity=-0.092 Sum_probs=33.3
Q ss_pred HcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 011236 255 IAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAE 334 (490)
Q Consensus 255 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 334 (490)
..|++++|..+|.-+....+ .+..-|..|..++-..+++++|...|........ -|+..+-....++...|+.+.|.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 34444444444444433222 2333334444444444444444444443222221 22222333333444444444444
Q ss_pred HHHHHHH
Q 011236 335 KMLEEWE 341 (490)
Q Consensus 335 ~~~~~~~ 341 (490)
..|....
T Consensus 126 ~~f~~a~ 132 (165)
T PRK15331 126 QCFELVN 132 (165)
T ss_pred HHHHHHH
Confidence 4444433
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.11 E-value=0.14 Score=43.82 Aligned_cols=95 Identities=12% Similarity=0.004 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC----ChhHHHHHH
Q 011236 71 ELQRVIRQLRSRKRFKHALQVSEWMSGQGL--AFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK----VDKLYGALL 144 (490)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~li 144 (490)
.|+.-+..+ +.|++..|.+.|...++... ...+..+-.+..++...|++++|..+|..+.+..| -+...--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 566666544 45667777777777776654 45566667777777777777777777776665543 234555666
Q ss_pred HHHHhcCChhHHHHHHHHHHhc
Q 011236 145 NCYVREGLVDESLSLMQKMKEM 166 (490)
Q Consensus 145 ~~~~~~g~~~~a~~~~~~m~~~ 166 (490)
....+.|+.++|...|++..++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6667777777777777777665
No 245
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.07 E-value=0.079 Score=46.00 Aligned_cols=83 Identities=11% Similarity=0.086 Sum_probs=69.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHH
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSI 430 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l 430 (490)
++..++..+...|+++.+...++++....+. |...|..++.+|.+.|+...|+..|+.+.....+..|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 5567788888889999999999999888766 788899999999999999999999998888777778899988877776
Q ss_pred HHHH
Q 011236 431 LDWL 434 (490)
Q Consensus 431 ~~~~ 434 (490)
....
T Consensus 234 ~~~~ 237 (280)
T COG3629 234 EEIL 237 (280)
T ss_pred HHHh
Confidence 6663
No 246
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=1.7 Score=42.70 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHH
Q 011236 350 RVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSS 429 (490)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 429 (490)
-+.+-.+..+...|+..+|.++-.+.+ -||-..|..=+.+++..+++++-+++-+.... +.-|.-
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-----------PIGy~P 749 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-----------PIGYLP 749 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-----------CCCchh
Confidence 344556666777788888877766654 36788888888888888888876666555432 344566
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHhcC
Q 011236 430 ILDWLGDNRDVEEVEAFVSSLKIKVQKRNMYHALTEAHIRSG 471 (490)
Q Consensus 430 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 471 (490)
.+.+|.+.|+.++|.+++-+.... .-.+.+|.+.|
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~l-------~ekv~ay~~~~ 784 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGGL-------QEKVKAYLRVG 784 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCCh-------HHHHHHHHHhc
Confidence 778888888888888887664332 24555566665
No 247
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.98 E-value=0.1 Score=48.25 Aligned_cols=63 Identities=22% Similarity=0.277 Sum_probs=50.5
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 348 DFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPN----SWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
+...++.+..+|.+.|++++|+..|++.++ +.|+.. +|..+..+|...|+.++|++.++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445677788888888888888888888776 778753 478888888888888888888888887
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.93 E-value=0.025 Score=33.67 Aligned_cols=39 Identities=10% Similarity=0.017 Sum_probs=24.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHH
Q 011236 426 LVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALT 464 (490)
Q Consensus 426 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~ 464 (490)
++..+..+|...|++++|+++++++.+..|. +..|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555666666666666666666666666666 55555543
No 249
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.24 Score=44.83 Aligned_cols=94 Identities=11% Similarity=0.009 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHH
Q 011236 385 NSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHAL 463 (490)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l 463 (490)
.++..+..+|.+.+++..|++...+.+... ++|......=..++...|+++.|+..|+++.+..|. ..+-+-|
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el 331 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAEL 331 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 467788888899999999999999888722 245566666677888889999999999999998888 5566666
Q ss_pred HHHHHhcC---CcHHHHHHHHHhC
Q 011236 464 TEAHIRSG---QEVDGLLESMKAD 484 (490)
Q Consensus 464 ~~~~~~~g---~~a~~~~~~m~~~ 484 (490)
+..-.+.. +...++|..|-..
T Consensus 332 ~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 332 IKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 65555544 6667788888653
No 250
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.87 E-value=1.2 Score=39.65 Aligned_cols=159 Identities=12% Similarity=0.066 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhhhccCCChhhHHHHHHHHHh--cC----ChhHHHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCC-
Q 011236 260 EKAIIYLKKCEDIVSKSKDALGYNHLISHYAS--LG----NKDEMMKFWGLQKIKCK---KQLNRDYITMLGSLVKIGE- 329 (490)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 329 (490)
++.+.+++.|.+.+.. .+..+|-+....... .. ...++..+|+.|.+.++ .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk-~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFK-RSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHhccC-ccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 3455667777776665 555555443222222 22 24567888888888777 4455556666543 3333
Q ss_pred ---HHHHHHHHHHHHhcCCCCCchh-HHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 011236 330 ---LEEAEKMLEEWELSCYCYDFRV-PNIILLGYSQKG---MIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEK 402 (490)
Q Consensus 330 ---~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (490)
.+.++.+++.+.+.|+..+-.. +.+-+-++.... .+.++..+++.+.+.|+++....|..+.-...-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 3466778888888777655432 222222222211 145778888889998888777776665544333333335
Q ss_pred HHHHHHHHHHhhhcCcCCC
Q 011236 403 AFECMKEALAVHEENKFWR 421 (490)
Q Consensus 403 a~~~~~~~~~~~~~~~~~~ 421 (490)
...-+.++.+...+..++.
T Consensus 236 ~~~~i~ev~~~L~~~k~~~ 254 (297)
T PF13170_consen 236 IVEEIKEVIDELKEQKGFG 254 (297)
T ss_pred HHHHHHHHHHHHhhCcccC
Confidence 5544444444333344544
No 251
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.17 Score=45.70 Aligned_cols=96 Identities=11% Similarity=0.048 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHH
Q 011236 350 RVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSS 429 (490)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 429 (490)
.++..+..+|.+.+++.+|+....+.+..+.. |+...-.-..+|...|+++.|+..|+++++ +.|+......
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k-------~~P~Nka~~~ 329 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK-------LEPSNKAARA 329 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH-------hCCCcHHHHH
Confidence 35667888899999999999999999988755 788877888899999999999999999988 5577655544
Q ss_pred HHHHHH-cCCCH-HHHHHHHHHHHhc
Q 011236 430 ILDWLG-DNRDV-EEVEAFVSSLKIK 453 (490)
Q Consensus 430 l~~~~~-~~g~~-~~a~~~~~~~~~~ 453 (490)
=+..|. +.... +...++|..|-..
T Consensus 330 el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 330 ELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444333 33333 3346677777554
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.26 Score=43.27 Aligned_cols=154 Identities=9% Similarity=-0.004 Sum_probs=106.8
Q ss_pred hcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhH----HHHHHHHHhcCCHH
Q 011236 291 SLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVP----NIILLGYSQKGMIE 366 (490)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~ 366 (490)
..|+..+|-..|+++....+ .|...+.-.-++|.-.|+.+.-...++++... ..+|...| ..+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 47788888888888888776 77777888888888999988888888887765 34454333 33444566789999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHH
Q 011236 367 KADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAF 446 (490)
Q Consensus 367 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 446 (490)
+|.+.-++..+.+.. |.-.-.++...+--.|++.++.+++.+-..... .+.-.-...|-...-.+...+.++.|+.+
T Consensus 193 dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr--~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR--QSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchh--hhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999988888876544 665666777777788889999888877654221 11111122333334445566889999998
Q ss_pred HHH
Q 011236 447 VSS 449 (490)
Q Consensus 447 ~~~ 449 (490)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 873
No 253
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.74 E-value=1.1 Score=38.20 Aligned_cols=203 Identities=16% Similarity=0.060 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhh-hccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHH
Q 011236 244 GTYSTVANYYIIAGLKEKAIIYLKKCEDI-VSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLG 322 (490)
Q Consensus 244 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 322 (490)
..+......+...+.+..+...+...... ... .....+......+...++...+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLP-NLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 33334444444445555544444444331 111 233334444444444444445555544333322211 111111111
Q ss_pred -HHHhcCCHHHHHHHHHHHHhcCC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 011236 323 -SLVKIGELEEAEKMLEEWELSCY--CYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNN 399 (490)
Q Consensus 323 -~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 399 (490)
.+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 44455555555555555433110 011112222222234445555555555555543211123445555555555555
Q ss_pred HHHHHHHHHHHHHhhhcCcCCCcc-hhhHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 011236 400 MEKAFECMKEALAVHEENKFWRPK-PSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQ 455 (490)
Q Consensus 400 ~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 455 (490)
++.+...+..+.. ..|+ ...+..+...+...+..+.+...+.+.....+
T Consensus 218 ~~~a~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 218 YEEALEYYEKALE-------LDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHHHHHHHHHHh-------hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 5555555555554 1122 22233333333344445555555555544443
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.68 E-value=1 Score=42.23 Aligned_cols=65 Identities=8% Similarity=0.003 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 011236 207 NFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCED 271 (490)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 271 (490)
..+-..+..++-+.|+.++|.+.+++|.......-.......|+.++...+.+.++..++.+-.+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33444566666778888888888888762222212344566788888888888888888877654
No 255
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.61 E-value=1.9 Score=39.91 Aligned_cols=119 Identities=21% Similarity=0.214 Sum_probs=75.8
Q ss_pred hcCC-HHHHHHHHHHHHhcCCCCCchhHHHHHH----HHHh---cCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHH
Q 011236 326 KIGE-LEEAEKMLEEWELSCYCYDFRVPNIILL----GYSQ---KGMIEKADAVLKEIVKKGKTPTPN----SWSIIAAG 393 (490)
Q Consensus 326 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~ 393 (490)
+.|. -++|..+++.+.+- .+.|..+-|.+.. .|.+ ...+.+-..+-+-+.+.|++|-.. .-|.|.++
T Consensus 391 ~~g~~dekalnLLk~il~f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQF-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred hcCCccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 3444 77888888888764 2234444333322 2322 233445555555566778776433 33333332
Q ss_pred --HhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 394 --YADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 394 --~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
+..+|++.++.-.-.-..+ +.|++.+|..+.-.+....++++|..++..+.-
T Consensus 470 EyLysqgey~kc~~ys~WL~~-------iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK-------IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH-------hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 4567888888766555544 779999999998888889999999999987654
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.58 E-value=0.061 Score=31.93 Aligned_cols=39 Identities=15% Similarity=0.361 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSII 390 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 390 (490)
++..+...|.+.|++++|.++|+++++..+. |...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 4556667777777777777777777776544 55555444
No 257
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=2.9 Score=41.84 Aligned_cols=179 Identities=12% Similarity=0.108 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH----HHHHHhhcCHHHHHHHHHHcccc-CCChhHHHH
Q 011236 68 SELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQ----LDLIGKVRGLESAETYFNSLNDE-DKVDKLYGA 142 (490)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~ 142 (490)
.......-|+.+.+..-++-|+.+.+. .+ .++.....+ ...+.+.|++++|...|-+.... +|. .
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~ 402 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----E 402 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----H
Confidence 344566777888888888888877553 32 244444444 44555789999999887665543 232 3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 011236 143 LLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSE 222 (490)
Q Consensus 143 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 222 (490)
+|.-|....+...-..+++.+.+.|.. +...-..|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sny 478 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNY 478 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhCh
Confidence 566667777777888889999999887 77788899999999999888777766544 2221 1113345666666666
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011236 223 LSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKC 269 (490)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 269 (490)
.++|..+-.+.. . .... +--.+-..+++++|++++..+
T Consensus 479 l~~a~~LA~k~~-~-----he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 479 LDEAELLATKFK-K-----HEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHHhc-c-----CHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 777666655543 1 1112 223344556777777776664
No 258
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.54 E-value=0.26 Score=42.14 Aligned_cols=70 Identities=17% Similarity=0.067 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhc----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011236 330 LEEAEKMLEEWELSCYCYDFRVPNIILLGYSQK----------------GMIEKADAVLKEIVKKGKTPTPNSWSIIAAG 393 (490)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 393 (490)
++=....++.|.+-|+.-|..+|+.|+..+-+. .+-+-+++++++|...|+.||-.+-..|+++
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~ 167 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNA 167 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 333334444445555555555555554443221 1334578899999999999999999999999
Q ss_pred HhccCC
Q 011236 394 YADKNN 399 (490)
Q Consensus 394 ~~~~~~ 399 (490)
|.+.+.
T Consensus 168 FGr~~~ 173 (406)
T KOG3941|consen 168 FGRWNF 173 (406)
T ss_pred hccccc
Confidence 988776
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.53 E-value=0.63 Score=34.83 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=24.2
Q ss_pred HHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011236 253 YIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKI 307 (490)
Q Consensus 253 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (490)
....|+.+.|++.|.+.....+ .....||.-.+++--.|+.++|++=+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P--~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAP--ERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcc--cchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3444444444444444444333 2344444444444444444444444444433
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.50 E-value=1.7 Score=41.88 Aligned_cols=162 Identities=13% Similarity=0.027 Sum_probs=106.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccCCChh------hHHHHHHHHHh----cCChhHHHHHHHHHHHhcCCCChhhHH
Q 011236 249 VANYYIIAGLKEKAIIYLKKCEDIVSKSKDAL------GYNHLISHYAS----LGNKDEMMKFWGLQKIKCKKQLNRDYI 318 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (490)
++....-.||-+.+++.+.+..+.... ..+. .|...+..++. ..+.+.|.+++..+....| +...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i-~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP--~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENI-RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP--NSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCc-chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC--CcHHHH
Confidence 667777789999999999886653332 2222 23444443333 4567889999998887764 444443
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhcCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-
Q 011236 319 -TMLGSLVKIGELEEAEKMLEEWELSCY---CYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAG- 393 (490)
Q Consensus 319 -~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~- 393 (490)
.-.+.+...|++++|.+.|+....... ......+--+...+.-.+++++|...|..+.+.+-. ...+|.-+..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHH
Confidence 345666778999999999997654211 112233445666788899999999999999886433 34445444433
Q ss_pred HhccCCH-------HHHHHHHHHHHHhh
Q 011236 394 YADKNNM-------EKAFECMKEALAVH 414 (490)
Q Consensus 394 ~~~~~~~-------~~a~~~~~~~~~~~ 414 (490)
+...++. ++|.++|.+.-...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 3456666 88888888876644
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.49 E-value=0.28 Score=46.37 Aligned_cols=162 Identities=14% Similarity=0.045 Sum_probs=95.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC
Q 011236 249 VANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIG 328 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 328 (490)
......-.++++++.++...-.-... -+..-.+.++..+.+.|..+.|+.+-..- . .-.....+.|
T Consensus 267 ~fk~av~~~d~~~v~~~i~~~~ll~~--i~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg 332 (443)
T PF04053_consen 267 EFKTAVLRGDFEEVLRMIAASNLLPN--IPKDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLG 332 (443)
T ss_dssp HHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT
T ss_pred HHHHHHHcCChhhhhhhhhhhhhccc--CChhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcC
Confidence 44556677888888777752111111 22445777777788888888887775421 1 1223344678
Q ss_pred CHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011236 329 ELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMK 408 (490)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 408 (490)
+++.|.++.++. .+...|..|.+...+.|+++-|.+.|++..+ |..|+-.|.-.|+.+.-.++.+
T Consensus 333 ~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 333 NLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp -HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred CHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence 888887765443 2556888888888888888888888877543 5666667777888777777776
Q ss_pred HHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 011236 409 EALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSL 450 (490)
Q Consensus 409 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 450 (490)
.+.. .| -++....++.-.|+.++..+++.+.
T Consensus 398 ~a~~-----~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 398 IAEE-----RG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHH-----TT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHH-----cc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 6655 22 1444444555568888887777653
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.42 E-value=1.5 Score=37.45 Aligned_cols=63 Identities=17% Similarity=0.052 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011236 315 RDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKK 378 (490)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 378 (490)
..+..+...+...++++.+...+......... ....+..+...+...+..+.+...+......
T Consensus 203 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 203 EALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33334444444444444444444444432111 1122222222333444455555555554443
No 263
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.42 E-value=0.94 Score=35.87 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=10.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 011236 355 ILLGYSQKGMIEKADAVLKEIVK 377 (490)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~m~~ 377 (490)
|.-+-.+.|++.+|.+.|..+..
T Consensus 173 LglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 173 LGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhHHHHhccchHHHHHHHHHHHc
Confidence 33333444455555544444443
No 264
>PRK11906 transcriptional regulator; Provisional
Probab=95.26 E-value=1.7 Score=40.63 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHc---------CCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhc
Q 011236 223 LSSMENVLQEMESQSHISMD-WGTYSTVANYYIIA---------GLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASL 292 (490)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 292 (490)
.+.|..+|.+......+.|+ ...|..+..++... .+..+|.+..++..+.++ .|......+..+....
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~--~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT--VDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhh
Confidence 44677777777633444444 34444444333221 123344444444444444 4555555555555555
Q ss_pred CChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011236 293 GNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWEL 342 (490)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (490)
++.+.|...|++.....+ ....+|......+.-.|+.++|.+.+++..+
T Consensus 352 ~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 352 GQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred cchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 556666666665555443 3333444444444445666666665555444
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.6 Score=41.14 Aligned_cols=156 Identities=15% Similarity=-0.006 Sum_probs=114.6
Q ss_pred HHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHH----HHHHHHHhcC
Q 011236 253 YIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYI----TMLGSLVKIG 328 (490)
Q Consensus 253 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~ 328 (490)
....|+..+|-..++++.+..| .|..++...=.+|...|+.+.-...+++....-. ++...|. ...-++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~P--tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn-~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYP--TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN-ADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHhCc--hhhhhhhhhhhHHHhccchhhhhhHHHHhccccC-CCCcHHHHHHHHHHhhHHHhc
Confidence 3457888888889999998777 6889999999999999999999999987776633 4443333 3334456789
Q ss_pred CHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccCCHHHHHH
Q 011236 329 ELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKK---GKTPTPNSWSIIAAGYADKNNMEKAFE 405 (490)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~ 405 (490)
-+++|++.-++..+.+ +.|...-.++.+.+-..|++.++.+...+-.+. +...-..-|-...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999998887753 335556667778888899999999887665432 111112345556666778899999999
Q ss_pred HHHHHHH
Q 011236 406 CMKEALA 412 (490)
Q Consensus 406 ~~~~~~~ 412 (490)
+|+.-+-
T Consensus 269 IyD~ei~ 275 (491)
T KOG2610|consen 269 IYDREIW 275 (491)
T ss_pred HHHHHHH
Confidence 9986544
No 266
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.06 E-value=1.3 Score=34.85 Aligned_cols=51 Identities=18% Similarity=0.101 Sum_probs=24.5
Q ss_pred hhcCHHHHHHHHHHccccCCChh-HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 011236 116 KVRGLESAETYFNSLNDEDKVDK-LYGALLNCYVREGLVDESLSLMQKMKEM 166 (490)
Q Consensus 116 ~~~~~~~A~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 166 (490)
+.++.+++..+++.+.-..|... .-..-...+.+.|++.+|+++|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 44555555555555554444211 1111223344556666666666665544
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.04 E-value=2.9 Score=38.67 Aligned_cols=70 Identities=19% Similarity=0.027 Sum_probs=43.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011236 312 QLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCY---DFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKT 381 (490)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 381 (490)
....++..+...+.+.|.++.|...+..+...+... .+.+.-.-+...-..|+..+|...++...+..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 344566777777777788887777777776643211 2233333445556667777777777777764333
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.98 E-value=0.91 Score=34.96 Aligned_cols=74 Identities=12% Similarity=0.126 Sum_probs=42.1
Q ss_pred HHHHHhhcCHHHHHHHHHHccccCC----ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 011236 111 LDLIGKVRGLESAETYFNSLNDEDK----VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTN 184 (490)
Q Consensus 111 ~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 184 (490)
.....+.|++++|.+.|+.+..+-| ...+--.|+.+|.+.+++++|...+++.++..+.-.-.-|...+.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3344455666666666666665542 2344555666666777777777777766666544333445555555443
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.83 E-value=3.6 Score=38.77 Aligned_cols=58 Identities=7% Similarity=0.076 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011236 353 NIILLGYSQKGMIEKADAVLKEIVKKGKT-PTPNSWSIIAAGYADKNNMEKAFECMKEA 410 (490)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 410 (490)
..+..+.-+.|+.++|.+.+++|.+..+. -+......|+.++...+.+.++..++.+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34555666677777777777777654322 13346677777777777777777777764
No 270
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.75 E-value=1.3 Score=34.15 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=9.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 011236 319 TMLGSLVKIGELEEAEKMLEEWEL 342 (490)
Q Consensus 319 ~l~~~~~~~~~~~~a~~~~~~~~~ 342 (490)
.++.+|.+.++++.|...++..++
T Consensus 52 ~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 52 DLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 271
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.69 E-value=0.3 Score=42.55 Aligned_cols=78 Identities=15% Similarity=0.245 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHH-----CCCCCCHHHHHH
Q 011236 138 KLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKE-----NGVPPDNFSYRI 212 (490)
Q Consensus 138 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 212 (490)
.++..++..+...|+.+.+...++++....+. +...|..+|.+|.+.|+...|...|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45666777777777777777777777776554 667777777777777777777777776644 477777776666
Q ss_pred HHHH
Q 011236 213 CINS 216 (490)
Q Consensus 213 li~~ 216 (490)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6555
No 272
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.67 E-value=3.1 Score=37.31 Aligned_cols=55 Identities=15% Similarity=-0.028 Sum_probs=24.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 011236 320 MLGSLVKIGELEEAEKMLEEWELSC-----YCYDFRVPNIILLGYSQKGMIEKADAVLKE 374 (490)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 374 (490)
+..++...+.++++.+.|+...+-- ......++..|...|.+..++++|.-+..+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~k 187 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCK 187 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHh
Confidence 4444444445555555555443311 111223444555555555555555544433
No 273
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.65 E-value=1.2 Score=39.78 Aligned_cols=127 Identities=17% Similarity=0.054 Sum_probs=59.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCC---CCh-hhH---
Q 011236 249 VANYYIIAGLKEKAIIYLKKCEDIVSKS----KDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKK---QLN-RDY--- 317 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~-~~~--- 317 (490)
+..++...+.++++++.|+...+.-... .....+-.|...|.+..|+++|.-+..+....... .|. .-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4455555556666666666544321110 12244556666666666666665554433322110 111 111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHh----cCCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011236 318 --ITMLGSLVKIGELEEAEKMLEEWEL----SCYCY-DFRVPNIILLGYSQKGMIEKADAVLKEI 375 (490)
Q Consensus 318 --~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 375 (490)
..|.-++...|....|.+.-++..+ .|-.+ -......+.+.|...|+.+.|..-|+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1233344455555555555554433 22221 1223344556666677776666655543
No 274
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.54 E-value=0.0065 Score=47.80 Aligned_cols=135 Identities=13% Similarity=0.148 Sum_probs=81.2
Q ss_pred CCCCcccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 011236 32 KPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQL 111 (490)
Q Consensus 32 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 111 (490)
++.....++..+.+.+.+..... .++.+...+...+....+.++..|++.++.+...++++ .. +......++
T Consensus 6 ~~~~~~~vi~~~~~~~~~~~l~~-yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~----~~yd~~~~~ 77 (143)
T PF00637_consen 6 DPLEISEVISAFEERNQPEELIE-YLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TS----NNYDLDKAL 77 (143)
T ss_dssp TTSCSCCCHHHCTTTT-GGGCTC-CHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SS----SSS-CTHHH
T ss_pred CccCHHHHHHHHHhCCCHHHHHH-HHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---cc----cccCHHHHH
Confidence 34455677788877777776666 78888777666778888889999988887777777766 11 123345566
Q ss_pred HHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 011236 112 DLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQ 187 (490)
Q Consensus 112 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 187 (490)
..|-+.|.+++|.-++..+.... ..+..+...++++.|.+...+ .++...|..++..|...+.
T Consensus 78 ~~c~~~~l~~~a~~Ly~~~~~~~-------~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 78 RLCEKHGLYEEAVYLYSKLGNHD-------EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHTTTSHHHHHHHHHCCTTHT-------TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHhcchHHHHHHHHHHcccHH-------HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 67777777777777666543321 111112233444444432222 1356677777777665554
No 275
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.53 E-value=1.5 Score=33.03 Aligned_cols=136 Identities=10% Similarity=0.104 Sum_probs=67.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhH---HHHHHHHHHhcCChhHH
Q 011236 80 RSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKL---YGALLNCYVREGLVDES 156 (490)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~a 156 (490)
.-.|..++..++..+...+. +..-++.++.-....-+-+-..++++.+-... |... ...++.+|+..|.
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF-Dis~C~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIF-DISKCGNLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS--GGG-S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhc-CchhhcchHHHHHHHHHhcc----
Confidence 34577777788877777664 45566666655555555555555555544321 1111 1223333333332
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 011236 157 LSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQ 236 (490)
Q Consensus 157 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 236 (490)
+.......+......|+-+...++++++.+. -.+++...-.+..+|.+.|+..++.+++.+.- +
T Consensus 85 --------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC-e 148 (161)
T PF09205_consen 85 --------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC-E 148 (161)
T ss_dssp ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH-H
T ss_pred --------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH-H
Confidence 2223344555566666666666666666542 34566666666667777777777777666665 5
Q ss_pred CCC
Q 011236 237 SHI 239 (490)
Q Consensus 237 ~~~ 239 (490)
.|+
T Consensus 149 kG~ 151 (161)
T PF09205_consen 149 KGL 151 (161)
T ss_dssp TT-
T ss_pred hch
Confidence 554
No 276
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.15 E-value=8.7 Score=40.35 Aligned_cols=28 Identities=11% Similarity=-0.058 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcC--ChhHHHHHHHHHHh
Q 011236 70 LELQRVIRQLRSRK--RFKHALQVSEWMSG 97 (490)
Q Consensus 70 ~~~~~ll~~~~~~~--~~~~a~~~~~~~~~ 97 (490)
.-...+|.++.+.+ ..+.|++.......
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 33445556666555 44555555555443
No 277
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.15 E-value=2.2 Score=33.67 Aligned_cols=72 Identities=10% Similarity=-0.170 Sum_probs=43.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHh
Q 011236 77 RQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVR 149 (490)
Q Consensus 77 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~ 149 (490)
..-.+.++.+++..++.-+.-.. |-.+..-..-...+...|++.+|..+|+.+....|....-..|+..|..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 33456677777777777776664 2333333344456667778888888887777666544444444444443
No 278
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.88 E-value=2.1 Score=32.27 Aligned_cols=54 Identities=26% Similarity=0.316 Sum_probs=18.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 358 GYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
.+...|+-+.-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.++.+
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 333344444444444433321 123333333444444444444444444444433
No 279
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.72 E-value=0.0021 Score=50.56 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=26.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHH
Q 011236 144 LNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLL 196 (490)
Q Consensus 144 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 196 (490)
+..+.+.+.+.....+++.+...+..-+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444455555555555555544433345555555555555555555555444
No 280
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.70 E-value=3 Score=33.36 Aligned_cols=134 Identities=12% Similarity=0.082 Sum_probs=60.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 011236 193 DVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDI 272 (490)
Q Consensus 193 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 272 (490)
+.++.+.+.+++|+...+..+++.+.+.|++..-..++ +.++-+|.......+-.+ .+....+.++--+|...
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll-----q~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL-----QYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----hhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH
Confidence 33444455566666666666666666666654433332 444445544433222111 11222233333333222
Q ss_pred hccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011236 273 VSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWEL 342 (490)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (490)
-. ..+..+++.+...|++-+|+++.+.... .+......++.+..+.+|...-..+++-..+
T Consensus 88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LG-----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 0234455555666666666666553211 1222223445555555555444444444433
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.50 E-value=1.4 Score=35.85 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc--hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011236 317 YITMLGSLVKIGELEEAEKMLEEWELSCYCYDF--RVPNIILLGYSQKGMIEKADAVLKEI 375 (490)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m 375 (490)
+..+...|++.|+.+.|.+.+.++.+....+.. ..+-.+|+...-.+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444555555555555555555555544322221 22334444455555555555554444
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.33 E-value=0.2 Score=28.10 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=17.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 386 SWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
+|..|...|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356667777777777777777777554
No 283
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.28 E-value=8.3 Score=37.25 Aligned_cols=407 Identities=11% Similarity=0.045 Sum_probs=231.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHH
Q 011236 67 ISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLN 145 (490)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~ 145 (490)
.+...+..+|.--......+.+..++..++..- |.-..-+......=.+.|..+.+..+|++....-| +...|...+.
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLA 121 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345556666665544555566777777777654 23333444455556688999999999999877655 5667776665
Q ss_pred HHH-hcCChhHHHHHHHHHHhc-CCC-CCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHh---c
Q 011236 146 CYV-REGLVDESLSLMQKMKEM-GSF-GSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYG---A 219 (490)
Q Consensus 146 ~~~-~~g~~~~a~~~~~~m~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~---~ 219 (490)
.+. ..|+.+...+.|+..... |.. -....|...|..-...+++.....+++..++.. . ..|+..-.-|. .
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP---~-~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP---L-HQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh---h-hHhHHHHHHHHHHHh
Confidence 544 467777888888887664 211 145567888887778889999999999988742 1 12222211111 1
Q ss_pred c------CChHHHHHHHHHHHh-------------------CCCC-CCC-HHHHHHHH-------HHHHHcCCHHHHHHH
Q 011236 220 R------SELSSMENVLQEMES-------------------QSHI-SMD-WGTYSTVA-------NYYIIAGLKEKAIIY 265 (490)
Q Consensus 220 ~------g~~~~a~~~~~~~~~-------------------~~~~-~~~-~~~~~~li-------~~~~~~~~~~~a~~~ 265 (490)
. ...+++.++-..... ..+- .+. ....+.+- ..+-...........
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 1 122222222111110 0000 000 00111111 111122222223333
Q ss_pred HHHHhhhhc------cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011236 266 LKKCEDIVS------KSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEE 339 (490)
Q Consensus 266 ~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 339 (490)
|+.-..... ..++..+|..-+..-...|+.+.+.-+|+........-+ ..|--.+.-....|+.+-|..++..
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~-efWiky~~~m~~~~~~~~~~~~~~~ 356 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD-EFWIKYARWMESSGDVSLANNVLAR 356 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH-HHHHHHHHHHHHcCchhHHHHHHHh
Confidence 333222110 003456788888888899999999999997766554222 3344444444455999988888877
Q ss_pred HHhcCCCCCchhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCCHHHHH---HHHHHHHHhh
Q 011236 340 WELSCYCYDFRVPNIILLGYS-QKGMIEKADAVLKEIVKKGKTPTPNS-WSIIAAGYADKNNMEKAF---ECMKEALAVH 414 (490)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~---~~~~~~~~~~ 414 (490)
..+- ..|+......+-..+. ..|+++.|..+++.+.+.- |+... -..-+....+.|..+.+. +++.....
T Consensus 357 ~~~i-~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-- 431 (577)
T KOG1258|consen 357 ACKI-HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-- 431 (577)
T ss_pred hhhh-cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc--
Confidence 6654 3333333232323333 3679999999999998763 44322 222233455677777777 44433332
Q ss_pred hcCcCCCcchhhHHHHHH-----HHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC-----CcHHHHHHHHHh
Q 011236 415 EENKFWRPKPSLVSSILD-----WLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG-----QEVDGLLESMKA 483 (490)
Q Consensus 415 ~~~~~~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g-----~~a~~~~~~m~~ 483 (490)
| +-+..+...+.- .+.-.++.+.|..++.++.+..|+ ...|..++......+ +--.-++..+..
T Consensus 432 ----~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~ 506 (577)
T KOG1258|consen 432 ----G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYDLLEPIDWKELK 506 (577)
T ss_pred ----c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhhhhhhHHHHHHh
Confidence 1 122223332222 223468899999999999999999 889999999988888 223333444444
Q ss_pred CCCCCC
Q 011236 484 DDIDED 489 (490)
Q Consensus 484 ~~~~pd 489 (490)
..+.+|
T Consensus 507 ~~~~~~ 512 (577)
T KOG1258|consen 507 MLIDFD 512 (577)
T ss_pred hhcccc
Confidence 444444
No 284
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.16 E-value=6.4 Score=36.83 Aligned_cols=129 Identities=12% Similarity=-0.017 Sum_probs=76.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC
Q 011236 249 VANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIG 328 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 328 (490)
-|.--...|++-.|-+-+.......+..|+.....+.| ....|+++.+...+......-. ....+..++++...+.|
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~-s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIG-TTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhc-CCchHHHHHHHhhhchh
Confidence 34444556776666544444433333215544443333 4567888888887774443333 55567778888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011236 329 ELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKT 381 (490)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 381 (490)
+++.|...-.-|....+. +..+...-.-.--..|-++++.-.++++...+++
T Consensus 372 r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 372 RWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 888888887777766554 2222222222234456678888888877765443
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.09 E-value=0.086 Score=29.17 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=20.1
Q ss_pred HHccccCC-ChhHHHHHHHHHHhcCChhHHH
Q 011236 128 NSLNDEDK-VDKLYGALLNCYVREGLVDESL 157 (490)
Q Consensus 128 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~ 157 (490)
++..+.+| +..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444456 5777777777777777777765
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.95 E-value=1.7 Score=35.42 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=32.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 011236 209 SYRICINSYGARSELSSMENVLQEMESQSHISMD--WGTYSTVANYYIIAGLKEKAIIYLKKCED 271 (490)
Q Consensus 209 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 271 (490)
.+..+...|++.|+.+.|.+.|.++. +....+. ...+-.+|......+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~-~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRAR-DYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHh-hhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34555566666666666666666655 3332222 22333455555555666665555555443
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.92 E-value=0.28 Score=26.91 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 385 NSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
.+|..+...|...|++++|+..|+++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566667777777777777777777766
No 288
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.89 E-value=8.7 Score=36.41 Aligned_cols=167 Identities=11% Similarity=0.038 Sum_probs=79.5
Q ss_pred CChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 011236 102 FSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCL 181 (490)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 181 (490)
.+......++..++...++.-...+-.++...+.+-..|..++.+|.+. ..+.-..+++++.+..+. |++.-..|...
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555556665555 334555555555555443 33333333333
Q ss_pred HHhcCCcCcHHHHHHHHHHCCCCC--C---HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc
Q 011236 182 YTNTGQHEKIPDVLLDMKENGVPP--D---NFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIA 256 (490)
Q Consensus 182 ~~~~~~~~~a~~~~~~m~~~~~~p--~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (490)
|-+ ++.+++...|.....+=++. + ...|..+...- ..+.+....+..++....|...-...+.-+-.-|...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 333 55555555555554432210 0 01233333211 2345555555555543344333344444444555556
Q ss_pred CCHHHHHHHHHHHhhhh
Q 011236 257 GLKEKAIIYLKKCEDIV 273 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~ 273 (490)
.++++|++++..+.+..
T Consensus 219 eN~~eai~Ilk~il~~d 235 (711)
T COG1747 219 ENWTEAIRILKHILEHD 235 (711)
T ss_pred cCHHHHHHHHHHHhhhc
Confidence 66666666666554433
No 289
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.88 E-value=0.18 Score=27.90 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=20.4
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 011236 372 LKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAF 404 (490)
Q Consensus 372 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 404 (490)
|++.++..+. |...|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555544 6667777777777777777664
No 290
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.80 E-value=1.1 Score=31.99 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHH
Q 011236 402 KAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAH 467 (490)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~ 467 (490)
+..+-++.+.. ..+.|++....+.+++|.+..++..|.++|+.++..... ...|..+++-+
T Consensus 28 e~rrglN~l~~-----~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFG-----YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTT-----SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHhc-----cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 44455555555 567788888888888888888888888888877766555 44666666544
No 291
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.79 E-value=10 Score=38.10 Aligned_cols=83 Identities=12% Similarity=0.200 Sum_probs=32.6
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHh---
Q 011236 215 NSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYAS--- 291 (490)
Q Consensus 215 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 291 (490)
..+.-.|+++.|.+.+-+.. ....+...+...+.-|.-.+-.+... ..+.......+...-+..||..|++
T Consensus 266 ~~LlLtgqFE~AI~~L~~~~---~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYRNE---FNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHhhHHHHHHHHHhhc---cCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 44455678888887776521 22244444433333222211111111 2222111110222557778888876
Q ss_pred cCChhHHHHHHH
Q 011236 292 LGNKDEMMKFWG 303 (490)
Q Consensus 292 ~~~~~~a~~~~~ 303 (490)
..++.+|.++|-
T Consensus 340 ~td~~~Al~Y~~ 351 (613)
T PF04097_consen 340 ITDPREALQYLY 351 (613)
T ss_dssp TT-HHHHHHHHH
T ss_pred ccCHHHHHHHHH
Confidence 456777777776
No 292
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.78 E-value=22 Score=40.72 Aligned_cols=315 Identities=13% Similarity=0.013 Sum_probs=165.8
Q ss_pred HHHHHHhhcCHHHHHHHHHHcccc----CCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 011236 110 QLDLIGKVRGLESAETYFNSLNDE----DKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNT 185 (490)
Q Consensus 110 l~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 185 (490)
+..+-.+++.+.+|...+++-... ......|-.+...|...+++|...-+...-.. +...++ -|......
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHhh
Confidence 444566788899999999884221 12334455566689999999888777764111 333333 34455678
Q ss_pred CCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHH-HHHHHHHHHcCCHHHHHH
Q 011236 186 GQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTY-STVANYYIIAGLKEKAII 264 (490)
Q Consensus 186 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~ 264 (490)
|++..|...|+.+.+.+. +...+++-+++.....|.++.+.-..+-.. .+..+....+ +.=+.+-.+.+++|....
T Consensus 1463 g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~--~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLI--INRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred ccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchh--hccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 999999999999987642 236677877777777888888777666554 2222222222 233444577888888777
Q ss_pred HHHHHhhhhccCCChhhHHHH--HHHHHhcC--ChhHHHHHHHHHHHhcCCC---------ChhhHHHHHHHHHhcCCHH
Q 011236 265 YLKKCEDIVSKSKDALGYNHL--ISHYASLG--NKDEMMKFWGLQKIKCKKQ---------LNRDYITMLGSLVKIGELE 331 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~ 331 (490)
.... .+..+|... .....+.. +.-.-.+..+.+......| -...|..++....-.
T Consensus 1540 ~l~~--------~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~---- 1607 (2382)
T KOG0890|consen 1540 YLSD--------RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL---- 1607 (2382)
T ss_pred hhhc--------ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----
Confidence 6651 233334333 22222211 1111112332222221100 012233333322211
Q ss_pred HHHHHHHHHHhcCCCCCchh------HHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHH-----HHHHHHHHHhccCC
Q 011236 332 EAEKMLEEWELSCYCYDFRV------PNIILLGYSQKGMIEK-ADAVLKEIVKKGKTPTPN-----SWSIIAAGYADKNN 399 (490)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~-----~~~~l~~~~~~~~~ 399 (490)
+-....+... +..++..+ |-.-+..-....+..+ .+.+-+.+......|+.. +|-...+.....|+
T Consensus 1608 el~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1608 ELENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred HHHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 1111111111 12222221 1111111111111111 111222222322233332 57777777777899
Q ss_pred HHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 011236 400 MEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQ 455 (490)
Q Consensus 400 ~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 455 (490)
++.|...+-++.+ .+ . +..+.....-+...|+...|..++++..+...
T Consensus 1686 ~q~A~nall~A~e-----~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKE-----SR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHhhhh-----cc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9999988888877 33 2 34455566777888999999999988776543
No 293
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.57 E-value=12 Score=37.16 Aligned_cols=277 Identities=11% Similarity=-0.014 Sum_probs=164.5
Q ss_pred hhHHHHHHHHHHhcCCCCCcchHHHHHHH-----HHhcCCcCcHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhcc
Q 011236 153 VDESLSLMQKMKEMGSFGSALNYNGIMCL-----YTNTGQHEKIPDVLLDMKE-------NGVPPDNFSYRICINSYGAR 220 (490)
Q Consensus 153 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~li~~~~~~ 220 (490)
...|...++.....| +...-..+..+ +....|.+.|..+|+.+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457888888887776 33333333333 3355688899999988866 44 333455566666653
Q ss_pred C-----ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHH--
Q 011236 221 S-----ELSSMENVLQEMESQSHISMDWGTYSTVANYYIIA---GLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYA-- 290 (490)
Q Consensus 221 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 290 (490)
. +.+.|..++.... ..|. |+...+ +..++... .+...|.++|...-..|. ....-+..++-...
T Consensus 302 ~~~~~~d~~~A~~~~~~aA-~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAA-ELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGH--ILAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHH-hcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCC
Confidence 2 6677999998887 7776 666654 33344333 357789999999887765 23322222222222
Q ss_pred hcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHH---Hh----cC
Q 011236 291 SLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGY---SQ----KG 363 (490)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g 363 (490)
...+...|..++.+....+. |...--...+..+.. ++++.+.-.+..+...|.+.....-..++... .. ..
T Consensus 376 v~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred cCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccccccccccc
Confidence 23477888999988877763 443333334444444 77777777777777665442221111111111 11 22
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHH----H
Q 011236 364 MIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADK----NNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWL----G 435 (490)
Q Consensus 364 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~----~ 435 (490)
+.+.+..++.+....| +......+...|... .+++.|...+..+.. .+ ....-.+...+ .
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~-----~~----~~~~~nlg~~~e~g~g 521 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASE-----QG----AQALFNLGYMHEHGEG 521 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHH-----hh----hHHHhhhhhHHhcCcC
Confidence 5667777777777665 566666666666544 458888888888876 33 32222333222 2
Q ss_pred cCCCHHHHHHHHHHHHhcccc
Q 011236 436 DNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 436 ~~g~~~~a~~~~~~~~~~~~~ 456 (490)
..+ +..|.+++++....+..
T Consensus 522 ~~~-~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 522 IKV-LHLAKRYYDQASEEDSR 541 (552)
T ss_pred cch-hHHHHHHHHHHHhcCch
Confidence 234 78888888887776554
No 294
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.49 E-value=7.4 Score=34.59 Aligned_cols=16 Identities=6% Similarity=-0.178 Sum_probs=9.2
Q ss_pred HHhcCCHHHHHHHHHH
Q 011236 359 YSQKGMIEKADAVLKE 374 (490)
Q Consensus 359 ~~~~g~~~~A~~~~~~ 374 (490)
+.+.++++.|...|+-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 3445666666666653
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.42 E-value=0.34 Score=27.13 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 011236 246 YSTVANYYIIAGLKEKAIIYLKKC 269 (490)
Q Consensus 246 ~~~li~~~~~~~~~~~a~~~~~~~ 269 (490)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445556666666666666666653
No 296
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.35 E-value=4.8 Score=32.18 Aligned_cols=135 Identities=13% Similarity=0.174 Sum_probs=86.1
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 011236 157 LSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQ 236 (490)
Q Consensus 157 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 236 (490)
.+.++.+.+.+++|+...|..+++.+.+.|++.. +..+.+.++-+|.......+-.+.. ....+.++--.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 3555666778888999999999999999887544 5555666777777766655544433 333444443344312
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011236 237 SHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKI 307 (490)
Q Consensus 237 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (490)
.+ ..+..++..+...|++-+|.++.+.... .+...-..++.+..+.+|...-..+++-...
T Consensus 88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~~~-----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LG-----TAYEEIIEVLLSKGQVLEALRYARQYHK-----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCC-----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12 1355688889999999999999887532 2223345677777777776655555553333
No 297
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.34 E-value=1.2 Score=31.41 Aligned_cols=63 Identities=11% Similarity=0.134 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHH
Q 011236 399 NMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEA 466 (490)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~ 466 (490)
+.-++.+-++.+.. ..+.|++....+.+++|.+.+|+..|.++|+.++..... ...|..+++-
T Consensus 22 D~we~rr~mN~l~~-----~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFG-----YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhc-----cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHH
Confidence 34455556666655 567777777777777877777787887777776654443 4455555443
No 298
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.17 E-value=7 Score=33.61 Aligned_cols=211 Identities=14% Similarity=0.131 Sum_probs=117.9
Q ss_pred CCCCCCHHHHHHHHHHH-hccCChHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhhhh----
Q 011236 201 NGVPPDNFSYRICINSY-GARSELSSMENVLQEMESQSHISMDW--GTYSTVANYYIIAGLKEKAIIYLKKCEDIV---- 273 (490)
Q Consensus 201 ~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---- 273 (490)
.+-.||+..-|..-++- .+..++++|+.-|++..+-.|-+.++ .+...+|..+.+.|++++....|.++..-.
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34556665544333221 23457888888888887222322222 234467888888888888888888875421
Q ss_pred ccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-
Q 011236 274 SKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCK-----KQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCY- 347 (490)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 347 (490)
...-+..+.|+++..-....+.+.-.++|+.-...-. +..-.|-..+...|...+++.....+++++..+.-..
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 1113445567777766666666666666664333211 1122334566777777777777777777776542111
Q ss_pred ----------CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHH-----hccCCHHHHHHHHHHHH
Q 011236 348 ----------DFRVPNIILLGYSQKGMIEKADAVLKEIVKKGK-TPTPNSWSIIAAGY-----ADKNNMEKAFECMKEAL 411 (490)
Q Consensus 348 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~ 411 (490)
-..+|..=|..|....+-.+-..++++.+.-.. .|.+... -+|+-| .+.|++++|..-|-++.
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHH
Confidence 123455566666666666666666666555432 1333222 223322 34566777765544444
Q ss_pred H
Q 011236 412 A 412 (490)
Q Consensus 412 ~ 412 (490)
.
T Consensus 259 K 259 (440)
T KOG1464|consen 259 K 259 (440)
T ss_pred h
Confidence 4
No 299
>PRK09687 putative lyase; Provisional
Probab=92.03 E-value=8.4 Score=34.21 Aligned_cols=233 Identities=12% Similarity=0.049 Sum_probs=126.9
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHhhhhccCCChh
Q 011236 205 PDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLK----EKAIIYLKKCEDIVSKSKDAL 280 (490)
Q Consensus 205 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 280 (490)
+|.......+.++...|..+ +...+..+. +. ++...-...+.++...|+. +++...+..+.... ++..
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll-~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D---~d~~ 106 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELC-SS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED---KSAC 106 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHH-hC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC---CCHH
Confidence 56667777777777776543 333333343 21 3445555566777777763 45666666553222 4555
Q ss_pred hHHHHHHHHHhcCCh-----hHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHH
Q 011236 281 GYNHLISHYASLGNK-----DEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNII 355 (490)
Q Consensus 281 ~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 355 (490)
.-...+.++...+.. ..+...+. ..-..++..+-...+.++.+.++ ..+...+-.+.+. +|..+-...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~---~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A 179 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQ---ITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWA 179 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHH---HHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHH
Confidence 555566665554321 12233332 22222455666677777777776 3455555555543 333344444
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHH
Q 011236 356 LLGYSQKG-MIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWL 434 (490)
Q Consensus 356 ~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 434 (490)
+.++.+.+ ....+...+..+.. .+|..+-...+.++.+.++ ..|+..+-+.++ . ++ .....+.++
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~-----~---~~--~~~~a~~AL 245 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELK-----K---GT--VGDLIIEAA 245 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHc-----C---Cc--hHHHHHHHH
Confidence 44444432 23455555555553 2466677777777777777 456666666655 2 12 234566777
Q ss_pred HcCCCHHHHHHHHHHHHhcccchhhhHHHHHHH
Q 011236 435 GDNRDVEEVEAFVSSLKIKVQKRNMYHALTEAH 467 (490)
Q Consensus 435 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 467 (490)
...|+. +|...+..+.+..++..+-...+.++
T Consensus 246 g~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 246 GELGDK-TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 777774 67777777776555544434444443
No 300
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.98 E-value=8 Score=33.87 Aligned_cols=113 Identities=11% Similarity=0.088 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHccccC---CChhHHHHHHHHHHhcCC--hhHHHHHHHHHH-hcCCCCCcchHHHHHHHHHhcCCcCcHH
Q 011236 119 GLESAETYFNSLNDED---KVDKLYGALLNCYVREGL--VDESLSLMQKMK-EMGSFGSALNYNGIMCLYTNTGQHEKIP 192 (490)
Q Consensus 119 ~~~~A~~~~~~~~~~~---p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 192 (490)
.+.+|+.+|+.....+ .|..+...+++......+ ...-.++.+-+. ..|..++..+...++..+++.++|.+.+
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 3456666666332211 355556666665554111 122222222222 2234556666666777777777777777
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 011236 193 DVLLDMKEN-GVPPDNFSYRICINSYGARSELSSMENVLQ 231 (490)
Q Consensus 193 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 231 (490)
++++..... +..-|...|...|+.-...|+..-..++.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 766666544 445566667777777777777665555544
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.97 E-value=4.8 Score=31.25 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=9.4
Q ss_pred HhcCChhHHHHHHHHHHhc
Q 011236 148 VREGLVDESLSLMQKMKEM 166 (490)
Q Consensus 148 ~~~g~~~~a~~~~~~m~~~ 166 (490)
...|++++|+++|++..+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 3445555555555554444
No 302
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.89 E-value=8.4 Score=37.28 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHH
Q 011236 208 FSYRICINSYGARSELSSMENVLQEM 233 (490)
Q Consensus 208 ~~~~~li~~~~~~g~~~~a~~~~~~~ 233 (490)
.-|..|.++....|++..|.+.|.+.
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34555555555555555555555444
No 303
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.82 E-value=7.3 Score=33.07 Aligned_cols=148 Identities=10% Similarity=0.073 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---C--CCCCchhHHHHH
Q 011236 282 YNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELS---C--YCYDFRVPNIIL 356 (490)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~ 356 (490)
|+-....|..+|.++.|-..+++.... ...-+++.|.+++++...- + ...-...+....
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 444455555555555555555433221 1344566677776655432 0 011122445566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHH
Q 011236 357 LGYSQKGMIEKADAVLKEIVKK----GKTPTP-NSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSIL 431 (490)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 431 (490)
+.+.+..++++|-..+.+-... .--|+. ..|-..|-.+....++..|..+++.-.+.- ...-.-+..+...|+
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip--~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP--AFLKSEDSRSLENLL 235 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc--cccChHHHHHHHHHH
Confidence 6677778887777666544322 111222 246666667777888888888888876611 011112336777888
Q ss_pred HHHHcCCCHHHHHHHHH
Q 011236 432 DWLGDNRDVEEVEAFVS 448 (490)
Q Consensus 432 ~~~~~~g~~~~a~~~~~ 448 (490)
.+|- .||.+++.+++.
T Consensus 236 ~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 236 TAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHhc-cCCHHHHHHHHc
Confidence 7764 578887776665
No 304
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.75 E-value=6.8 Score=32.58 Aligned_cols=183 Identities=14% Similarity=0.101 Sum_probs=93.5
Q ss_pred HHhhcCHHHHHHHHHHccccCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHH
Q 011236 114 IGKVRGLESAETYFNSLNDEDKV-DKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIP 192 (490)
Q Consensus 114 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 192 (490)
|-..|-+..|+-=|.+.....|+ +.+||-|.--+...|+++.|.+.|+...+.++.-+-...|.-|. +--.|+++-|.
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq 153 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQ 153 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhH
Confidence 33445556666666666666664 67788888888888999999999988888754433222232222 23457788887
Q ss_pred HHHHHHHHCCC-CCCHHHHHHHHHHHhccCChHHHHHH-HHHHHhCCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHH
Q 011236 193 DVLLDMKENGV-PPDNFSYRICINSYGARSELSSMENV-LQEMESQSHISMDWGTYSTV-ANYYIIAGLKEKAIIYLKKC 269 (490)
Q Consensus 193 ~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~ 269 (490)
+=|...-+.+. .|-...|--+.. ..-++.+|..- .++.. . .|..-|... +..|...=..+ .+++++
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~-~----~d~e~WG~~iV~~yLgkiS~e---~l~~~~ 222 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE-K----SDKEQWGWNIVEFYLGKISEE---TLMERL 222 (297)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH-h----ccHhhhhHHHHHHHHhhccHH---HHHHHH
Confidence 76666655432 122222222222 23355555443 33333 2 222222222 22222111111 122222
Q ss_pred hhhhccC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 011236 270 EDIVSKS-----KDALGYNHLISHYASLGNKDEMMKFWGLQKIK 308 (490)
Q Consensus 270 ~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (490)
....... .=..||--+.+.+...|+.++|..+|+-.+..
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 2111100 11245666666777777777777777755443
No 305
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.59 E-value=4.7 Score=32.98 Aligned_cols=53 Identities=19% Similarity=0.120 Sum_probs=22.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 359 YSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
+.+.+.++.|+.-..+.++.++. .......-..+|.+...+++|+.-|+..++
T Consensus 144 ~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 144 LIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34444444444444444444322 222222223344444444444444444444
No 306
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.46 E-value=1.4 Score=35.92 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=72.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHH
Q 011236 357 LGYSQKGMIEKADAVLKEIVKKGKTPT----PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSIL 431 (490)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~ 431 (490)
.-+...|++++|..-|...++.-+... ...|..-..++.+.+.++.|+.-..++++ +.|+. .....-.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie-------l~pty~kAl~RRA 175 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE-------LNPTYEKALERRA 175 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh-------cCchhHHHHHHHH
Confidence 347889999999999999998632211 23566666788899999999999999988 33543 3334445
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 432 DWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 432 ~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
.+|.+...+++|..-++++.+..|.
T Consensus 176 eayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 6788899999999999999999988
No 307
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.36 E-value=0.55 Score=25.60 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=16.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 386 SWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
.|..+...+...|++++|++.|+++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666666666666666666
No 308
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.36 E-value=2.5 Score=34.37 Aligned_cols=130 Identities=13% Similarity=0.049 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH--HHHHHHHhhcCHHHHHHHHHHccccCCCh----hHHHH
Q 011236 69 ELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHA--VQLDLIGKVRGLESAETYFNSLNDEDKVD----KLYGA 142 (490)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~ 142 (490)
+..|..++.... .+.. +.....+.+...+....-..+. .+...+...|+++.|..-++.......|. .+--.
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 445566665553 2222 4445555555544222222222 23445556667777766666555432221 11223
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCC
Q 011236 143 LLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENG 202 (490)
Q Consensus 143 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 202 (490)
|.+.....|.+++|+..++...+.+.. ......-.+.+...|+-++|..-|....+.+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 445566667777777766655544321 1122333456666677777777777666654
No 309
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.33 E-value=7.9 Score=34.17 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=63.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011236 314 NRDYITMLGSLVKIGELEEAEKMLEEWELSC---YCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSII 390 (490)
Q Consensus 314 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 390 (490)
..+...++..-....+++.+...+-+++.+. ..|+...+ ..++.+. .-++++++.++..=++.|+-||.++++.+
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHH
Confidence 3445555555555677777877777766541 12222222 2233332 34566888888887888888888888888
Q ss_pred HHHHhccCCHHHHHHHHHHHHH
Q 011236 391 AAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
++.+.+.+++.+|.++.-.|..
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHH
Confidence 8888888888888877777665
No 310
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.24 E-value=9.6 Score=33.31 Aligned_cols=76 Identities=12% Similarity=0.018 Sum_probs=56.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhH
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLV 427 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~ 427 (490)
+++.....|..+|.+.+|.++.++.+..++- +...|-.++..+...|+--.+...++++.+......|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3455667788889999999988888887543 777788888888888887788777777766444446666665444
No 311
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.20 E-value=8.7 Score=33.64 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=29.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHh-cCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011236 277 KDALGYNHLISHYASLGNKDEMMKFWGLQKIK-CKKQLNRDYITMLGSLVKIGELEEAEK 335 (490)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 335 (490)
++..+...++..++..++|..-.++|+..... .+..|...|..+|+.....|+..-...
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 44444555555555555555555555543333 233444555555555555555443333
No 312
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.13 E-value=2 Score=35.51 Aligned_cols=76 Identities=14% Similarity=0.024 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 011236 317 YITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGK--TPTPNSWSIIAAG 393 (490)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~ 393 (490)
...-+..+.+.+.+.+++...++-.+.+ +.|...-..+++.||-.|++++|..-++-.-...+ .+-..+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4445566677778888888777766652 33555666677888888888888777766655432 2334556666654
No 313
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.09 E-value=2.9 Score=36.72 Aligned_cols=99 Identities=11% Similarity=0.137 Sum_probs=66.9
Q ss_pred CCChhhHHHHHHHHHhhcCHHHHHHHHHHccccC-----CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchH
Q 011236 101 AFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED-----KVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNY 175 (490)
Q Consensus 101 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 175 (490)
+.+..+....+.......+++.+...+-.+.... |+.. -.++++.+. .-+.++++.++..=.+.|+-||.+++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence 4455555555555555677888887776665542 2211 112233332 33567888888888888888999999
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHC
Q 011236 176 NGIMCLYTNTGQHEKIPDVLLDMKEN 201 (490)
Q Consensus 176 ~~l~~~~~~~~~~~~a~~~~~~m~~~ 201 (490)
+.+|+.+.+.+++..|.++...|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999988888887777654
No 314
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.81 E-value=22 Score=36.81 Aligned_cols=186 Identities=14% Similarity=0.105 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCCCchhHH---
Q 011236 282 YNHLISHYASLGNKDEMMKFWGLQKIKCK---KQLNRDYITMLGSLVKIGEL--EEAEKMLEEWELSCYCYDFRVPN--- 353 (490)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~--- 353 (490)
|..|+..|...|..++|+++|........ ......+..++..+.+.+.. +-..++-+-..+....-...++.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 67777777788888888888776655321 11112233455555555543 44444444333332111111111
Q ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------CCHHHHHHH-----HHHHH
Q 011236 354 ---------IILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADK--------NNMEKAFEC-----MKEAL 411 (490)
Q Consensus 354 ---------~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------~~~~~a~~~-----~~~~~ 411 (490)
.-+-.|......+-+..+++.+....-.++....+.++..|.+. ++.+++.+. +..++
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence 12334666777788888888888765556777777777776542 122233333 22222
Q ss_pred HhhhcCcCCCcch--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhc--------------ccc-hhhhHHHHHHHH
Q 011236 412 AVHEENKFWRPKP--------SLVSSILDWLGDNRDVEEVEAFVSSLKIK--------------VQK-RNMYHALTEAHI 468 (490)
Q Consensus 412 ~~~~~~~~~~p~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------~~~-~~~~~~l~~~~~ 468 (490)
+ ....+.|.. ..|....-.+.+.|+.++|..++-..... +.. ...|-.++..|.
T Consensus 667 ~---~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l 743 (877)
T KOG2063|consen 667 E---SSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYL 743 (877)
T ss_pred h---hhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHh
Confidence 2 112333332 23333333445888888888877655442 122 566777777776
Q ss_pred hc
Q 011236 469 RS 470 (490)
Q Consensus 469 ~~ 470 (490)
..
T Consensus 744 ~~ 745 (877)
T KOG2063|consen 744 NP 745 (877)
T ss_pred cc
Confidence 65
No 315
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.73 E-value=2.5 Score=33.98 Aligned_cols=49 Identities=8% Similarity=0.048 Sum_probs=24.2
Q ss_pred CCcch-hhHHHHHHHHHcCC-----------CHHHHHHHHHHHHhcccchhhhHHHHHHHH
Q 011236 420 WRPKP-SLVSSILDWLGDNR-----------DVEEVEAFVSSLKIKVQKRNMYHALTEAHI 468 (490)
Q Consensus 420 ~~p~~-~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 468 (490)
+.|+. .++.++..++...+ .+++|...|+++....|....|+.-+....
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 55665 56666666554322 144455555555555666555655555543
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.65 E-value=2.9 Score=34.38 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=56.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCC
Q 011236 359 YSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNR 438 (490)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 438 (490)
..+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++.+++.++++... .+-.+|+..+.+|...+.+.|
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~--~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN--PDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHhc
Confidence 455555 567777777776655545555555555555 5677888888888887553 333677788888888888888
Q ss_pred CHHHHH
Q 011236 439 DVEEVE 444 (490)
Q Consensus 439 ~~~~a~ 444 (490)
+++.|-
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 887764
No 317
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.40 E-value=0.79 Score=25.04 Aligned_cols=32 Identities=9% Similarity=-0.132 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 425 SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
.+|..+...+...|++++|...|+++.+..|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888999999999999999998887663
No 318
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.82 E-value=3.1 Score=39.98 Aligned_cols=99 Identities=18% Similarity=0.140 Sum_probs=48.2
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhH
Q 011236 218 GARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDE 297 (490)
Q Consensus 218 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (490)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+-+.
T Consensus 648 l~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhH
Confidence 34566666666555442 233455666666666666666666655322 3344445555555444
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011236 298 MMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEE 339 (490)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 339 (490)
...+-......+. .+. ..-+|...|+++++.+++..
T Consensus 711 l~~la~~~~~~g~-~N~-----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 711 LAVLASLAKKQGK-NNL-----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHhhcc-cch-----HHHHHHHcCCHHHHHHHHHh
Confidence 3333333333332 222 11223345666666555543
No 319
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.75 E-value=8 Score=30.05 Aligned_cols=57 Identities=7% Similarity=-0.149 Sum_probs=38.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCCh
Q 011236 80 RSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVD 137 (490)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 137 (490)
....+++++..+++.|.-.. |-.+..-..-...+...|++++|.++|+.+.+..+..
T Consensus 21 L~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~ 77 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP 77 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc
Confidence 45677888888888777665 2333333444456677888888888888888776543
No 320
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.71 E-value=0.96 Score=24.58 Aligned_cols=31 Identities=6% Similarity=-0.199 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 011236 425 SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQ 455 (490)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 455 (490)
..+..+...+...|++++|.+.+++..+..|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3566778888999999999999999887765
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.61 E-value=2.7 Score=34.88 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC----ChhHHHHHHHH
Q 011236 71 ELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK----VDKLYGALLNC 146 (490)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~li~~ 146 (490)
+.+..++.+.+.+..++++...+.-.+.+ |.+...-..++..+|-.|+++.|..-++......| -...|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556677778888888888888877776 56677777888888889999988887777666554 34556666654
No 322
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.36 E-value=4.4 Score=28.65 Aligned_cols=46 Identities=9% Similarity=-0.046 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 011236 225 SMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCED 271 (490)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 271 (490)
++.+-++.+- ..++.|++....+.+++|.+.+++.-|.++|+.++.
T Consensus 25 e~rr~mN~l~-~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLF-GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHh-ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444 455555555555555555555555555555555543
No 323
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.12 E-value=16 Score=32.69 Aligned_cols=129 Identities=10% Similarity=0.028 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHh--cC----CHHHHHHHHHHHHhcCC---CCCchhHHHHHHHHHhcCC---
Q 011236 297 EMMKFWGLQKIKCKKQLNRDYITMLGSLVK--IG----ELEEAEKMLEEWELSCY---CYDFRVPNIILLGYSQKGM--- 364 (490)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~--- 364 (490)
+...+++.+...+..-+..+|.+..-.... .. ....+..+++.|++.-+ .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 445566666666555555555443222222 12 23456667777766421 2223333433332 2222
Q ss_pred -HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCC-HH--HHHHHHHHHHHhhhcCcCCCcchhhHHHHHH
Q 011236 365 -IEKADAVLKEIVKKGKTPTPN-SWSIIAAGYADKNN-ME--KAFECMKEALAVHEENKFWRPKPSLVSSILD 432 (490)
Q Consensus 365 -~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~-~~--~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 432 (490)
.+.+..+|+.+.+.|...+-. -+.+-+-++..... .. ++.++++.+.+ .|+++....|..+.-
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-----~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-----NGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-----cCCccccccccHHHH
Confidence 245556666666666654332 22222333333222 22 44555666655 566666655554443
No 324
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.90 E-value=28 Score=35.20 Aligned_cols=317 Identities=8% Similarity=-0.035 Sum_probs=146.9
Q ss_pred HHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHhcCCcCc
Q 011236 113 LIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSAL-NYNGIMCLYTNTGQHEK 190 (490)
Q Consensus 113 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~ 190 (490)
-..+.|++..+.++...+..... .-..|..|..... ....++...++++-.. .|-.. .-...+..+.+.+++..
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~---~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLM-NQPAVQVTNFIRANPT---LPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccc-cCCHHHHHHHHHHCCC---CchHHHHHHHHHHHHHHccCHHH
Confidence 34466778887777776643211 1122333222111 2234444433332211 11111 11223334445556655
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 011236 191 IPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCE 270 (490)
Q Consensus 191 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 270 (490)
..+.+ .. .+.+...-.....+....|+.++|......+= ..|- .....++.++..+.+.|...... +..+|.
T Consensus 118 ~~~~~----~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW-~~g~-~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~ 189 (644)
T PRK11619 118 LLAFS----PE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELW-LTGK-SLPNACDKLFSVWQQSGKQDPLA-YLERIR 189 (644)
T ss_pred HHHhc----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCC-CCChHHHHHHHHHHHcCCCCHHH-HHHHHH
Confidence 55422 11 23344444556667777788777776666665 3333 34556677777777777654432 333333
Q ss_pred hhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHh---------cCCCChhhHHHHHHHHHh--cCCHHHHHHHHHH
Q 011236 271 DIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIK---------CKKQLNRDYITMLGSLVK--IGELEEAEKMLEE 339 (490)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~ 339 (490)
..... .+...-..+...+ . .+.....+.+..+... ...++...-..++.++.+ ..+.+.|...+..
T Consensus 190 ~al~~-~~~~lA~~l~~~l-~-~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~ 266 (644)
T PRK11619 190 LAMKA-GNTGLVTYLAKQL-P-ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPS 266 (644)
T ss_pred HHHHC-CCHHHHHHHHHhc-C-hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 22222 3333333333322 1 1111111111111110 001122111222222222 3456777777776
Q ss_pred HHhcC-CCCCc--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhc
Q 011236 340 WELSC-YCYDF--RVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEE 416 (490)
Q Consensus 340 ~~~~~-~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 416 (490)
..... ..+.. .++..+.......+..++|...++...... .|......-+..-...++++.+...+..|-.
T Consensus 267 ~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~---- 340 (644)
T PRK11619 267 LVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPM---- 340 (644)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCH----
Confidence 64432 22211 123333333333322455656555544322 2344445555555577888877777777644
Q ss_pred CcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 417 NKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 417 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
...-...-..-+.+++...|+.++|..+|+.+..
T Consensus 341 --~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 341 --EAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred --hhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2222334455666776677888888888888743
No 325
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.84 E-value=28 Score=35.06 Aligned_cols=152 Identities=18% Similarity=0.212 Sum_probs=90.4
Q ss_pred HHHHHhhcCHHHHHHHHHHccccCC---ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 011236 111 LDLIGKVRGLESAETYFNSLNDEDK---VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQ 187 (490)
Q Consensus 111 ~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 187 (490)
++.+.+.+.+++|+...+......| ...++...|..+...|++++|-...-.|... +..-|...+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 6677788888888888887766544 3556888888888889999988888888765 66667766666666665
Q ss_pred cCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH--------------HHHHHHh--CCCCCCCHHHHHHHHH
Q 011236 188 HEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMEN--------------VLQEMES--QSHISMDWGTYSTVAN 251 (490)
Q Consensus 188 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~--------------~~~~~~~--~~~~~~~~~~~~~li~ 251 (490)
......++ .......+...|..++..+.. .+...-.+ +.+.... +.+- .+...-..|+.
T Consensus 439 l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~S-e~~~L~e~La~ 513 (846)
T KOG2066|consen 439 LTDIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNS-ESTALLEVLAH 513 (846)
T ss_pred cchhhccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhc-cchhHHHHHHH
Confidence 54433221 111111233445555554443 22111111 1111110 0011 12223334888
Q ss_pred HHHHcCCHHHHHHHHHHHhh
Q 011236 252 YYIIAGLKEKAIIYLKKCED 271 (490)
Q Consensus 252 ~~~~~~~~~~a~~~~~~~~~ 271 (490)
.|...++++.|..++-..++
T Consensus 514 LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHccChHHHHHHHHhccC
Confidence 88899999999988877544
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.51 E-value=1.2 Score=25.65 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 011236 385 NSWSIIAAGYADKNNMEKAFECMKEALAVH 414 (490)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 414 (490)
.+++.|...|...|++++|..++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 466777777777777777777777776633
No 327
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.27 E-value=14 Score=30.86 Aligned_cols=186 Identities=15% Similarity=-0.021 Sum_probs=108.6
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH
Q 011236 252 YYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELE 331 (490)
Q Consensus 252 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 331 (490)
.|-..|-++-|.-=|.+.....+ .-+..||-+.-.+...|+++.|.+.|+...+-++ ....+...-.-++--.|++.
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P--~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCC--CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC-cchHHHhccceeeeecCchH
Confidence 46667777777777777766554 4567788888888889999999999987776655 22233222222334468888
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHh--cCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011236 332 EAEKMLEEWELSCYCYDFRVPNIILLGYSQ--KGMIEKADAVL-KEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMK 408 (490)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~-~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 408 (490)
-|.+-+...-+... .|+ |.+ +..|.. .-++.+|..-+ ++.... |..-|...|..|.-..-. ...+++
T Consensus 151 LAq~d~~~fYQ~D~-~DP--fR~-LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS--~e~l~~ 220 (297)
T COG4785 151 LAQDDLLAFYQDDP-NDP--FRS-LWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKIS--EETLME 220 (297)
T ss_pred hhHHHHHHHHhcCC-CCh--HHH-HHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhcc--HHHHHH
Confidence 88777666655421 122 222 222322 23455665433 333332 445555544443322211 233444
Q ss_pred HHHHhhhcCcCCCcc-------hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 409 EALAVHEENKFWRPK-------PSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 409 ~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
.+.. +-.-+ ..||--+..-+...|+.++|..+|+-......-
T Consensus 221 ~~~a------~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 221 RLKA------DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred HHHh------hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence 4444 21211 246667777888899999999999987776544
No 328
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.16 E-value=56 Score=37.74 Aligned_cols=146 Identities=12% Similarity=-0.007 Sum_probs=94.1
Q ss_pred HHHhcCChhHHHHHHHHH----HhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCCh
Q 011236 78 QLRSRKRFKHALQVSEWM----SGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLV 153 (490)
Q Consensus 78 ~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 153 (490)
+--+.+.+..|+..++.- .+.. .....+..+...|+..+++|....+...-. ..|+ .+. -|-.....|++
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-a~~s--l~~-qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRF-ADPS--LYQ-QILEHEASGNW 1465 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhh-cCcc--HHH-HHHHHHhhccH
Confidence 444567788898888883 2222 233444455559999999998888776411 1133 233 34455678999
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCChHHHHHHHH
Q 011236 154 DESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRI-CINSYGARSELSSMENVLQ 231 (490)
Q Consensus 154 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~ 231 (490)
..|...|+.+.+.+.. ...+++-++......|.++.+.-..+-.... ..+....++. -+.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 9999999999988543 5777887777777778877777655544433 2233333333 3445567778887766654
No 329
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.03 E-value=22 Score=32.82 Aligned_cols=66 Identities=14% Similarity=-0.037 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011236 242 DWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKS--KDALGYNHLISHYASLGNKDEMMKFWGLQKI 307 (490)
Q Consensus 242 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (490)
...++..++..+.+.|.++.|...+..+....... ..+.....-....-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556667777777777777777777766543210 1233344445555566777777777766655
No 330
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.97 E-value=32 Score=34.73 Aligned_cols=408 Identities=11% Similarity=0.059 Sum_probs=202.3
Q ss_pred HHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCChh-----hHHHHHHHHHhhcCHHHHHHHHHHccccC---C-Ch--h
Q 011236 71 ELQRVIRQLR-SRKRFKHALQVSEWMSGQGLAFSVH-----DHAVQLDLIGKVRGLESAETYFNSLNDED---K-VD--K 138 (490)
Q Consensus 71 ~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p-~~--~ 138 (490)
++-.+...+. ...+++.|...+++.......++-. ....++..+.+.+... |...+++..+.- + +. .
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 3445555554 6688999999999875544322222 2234556666666555 888888765532 1 12 2
Q ss_pred HHHHH-HHHHHhcCChhHHHHHHHHHHhcC---CCCCcchHHHHHHHHH--hcCCcCcHHHHHHHHHHCC--C-------
Q 011236 139 LYGAL-LNCYVREGLVDESLSLMQKMKEMG---SFGSALNYNGIMCLYT--NTGQHEKIPDVLLDMKENG--V------- 203 (490)
Q Consensus 139 ~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~~--~------- 203 (490)
.+.-+ +..+...+++..|.+.++.+...- ..|-..++-.++.+.. ..+..+.+.+.++.+.... +
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 22333 333333479999999999886542 3334445555555544 4456777888777774321 1
Q ss_pred CCCHHHHHHHHHHHh--ccCChHHHHHHHHHHHh------CCC----------CC-------------CCH---------
Q 011236 204 PPDNFSYRICINSYG--ARSELSSMENVLQEMES------QSH----------IS-------------MDW--------- 243 (490)
Q Consensus 204 ~p~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~------~~~----------~~-------------~~~--------- 243 (490)
.|-..+|..+++.++ ..|+++.+...++++.. +.. ++ +..
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l 299 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEEL 299 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHH
Confidence 345566777776554 56776666665554431 111 00 000
Q ss_pred HHHHHHHH--HHHHcCCHHHHHHHHHHHhhh----h---ccCCC--------hhhHHHHHHH---------HHhcCChhH
Q 011236 244 GTYSTVAN--YYIIAGLKEKAIIYLKKCEDI----V---SKSKD--------ALGYNHLISH---------YASLGNKDE 297 (490)
Q Consensus 244 ~~~~~li~--~~~~~~~~~~a~~~~~~~~~~----~---~~~~~--------~~~~~~l~~~---------~~~~~~~~~ 297 (490)
.....++. .++..+..++|.+++++..+. . ...+. ...|...+.. .+-.+++..
T Consensus 300 ~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~ 379 (608)
T PF10345_consen 300 YALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSK 379 (608)
T ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 01111222 223344444555555443221 1 11011 1222222222 235788999
Q ss_pred HHHHHHHHHHhcC-CCC-------hhhHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCCCchhHHH--HHHHH
Q 011236 298 MMKFWGLQKIKCK-KQL-------NRDYITMLGSLVKIGELEEAEKMLE--------EWELSCYCYDFRVPNI--ILLGY 359 (490)
Q Consensus 298 a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~--l~~~~ 359 (490)
|...++.+..... .|+ +..+....-.+-..|+.+.|...|. .....+...+..++.. ++..+
T Consensus 380 a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~ 459 (608)
T PF10345_consen 380 ATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIIL 459 (608)
T ss_pred HHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHh
Confidence 9999998876543 122 1222222233345799999999998 4444444444444432 11122
Q ss_pred Hhc--CCHHH--HHHHHHHHHHc-CCCC--CHHHHHHH-HHHHhcc--CCHHHHHHHHHHHHHhhhcCcCCCcch---hh
Q 011236 360 SQK--GMIEK--ADAVLKEIVKK-GKTP--TPNSWSII-AAGYADK--NNMEKAFECMKEALAVHEENKFWRPKP---SL 426 (490)
Q Consensus 360 ~~~--g~~~~--A~~~~~~m~~~-~~~p--~~~~~~~l-~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~p~~---~~ 426 (490)
... ...++ +..+++.+... .-.| +..++..+ +.++... -...++...+.+.++... .....+. .+
T Consensus 460 ~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~--~~~~n~~l~~~~ 537 (608)
T PF10345_consen 460 QYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMAN--NKLGNSQLLAIL 537 (608)
T ss_pred HhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHH--HhhccchHHHHH
Confidence 222 22233 66666665432 1122 33344444 3333322 223466666666555220 0111222 22
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh---cccc--hhhhH-----HHHHHHHhcC--CcHHHHHHHHH
Q 011236 427 VSSILDWLGDNRDVEEVEAFVSSLKI---KVQK--RNMYH-----ALTEAHIRSG--QEVDGLLESMK 482 (490)
Q Consensus 427 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~--~~~~~-----~l~~~~~~~g--~~a~~~~~~m~ 482 (490)
++.+...+. .|+..+..+....... ..++ ...|. .+.+.+...| ++|.....+..
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 333333333 6787776555543221 1222 44553 3444466777 67776665543
No 331
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.80 E-value=26 Score=33.45 Aligned_cols=179 Identities=13% Similarity=0.095 Sum_probs=111.7
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011236 136 VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICIN 215 (490)
Q Consensus 136 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 215 (490)
|....-+++..+.....+.-...+..+|...|- +-..|-.++.+|..+ ..+.-..+++++.+..+. |+..-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 555667778888877777788888888887653 666778888888777 556777788877776552 4444444555
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHH
Q 011236 216 SYGARSELSSMENVLQEMESQSHISMD------WGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHY 289 (490)
Q Consensus 216 ~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (490)
.|-+ ++.+.+..+|.++. ..=+ |. ...|.-+... -..+.|....+..++........-.+.+.-+-.-|
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~-yrfI-~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKAL-YRFI-PRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-hchhhHHHHHHHHH-HHhc-chhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 5544 77777777877776 3222 21 1122222211 13456667777666665544324445556666667
Q ss_pred HhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 011236 290 ASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSL 324 (490)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 324 (490)
....++++|++++....+... .|..+-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHDE-KDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHHH
Confidence 777788888888876666544 5555555555443
No 332
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=87.69 E-value=5.4 Score=27.61 Aligned_cols=66 Identities=11% Similarity=0.078 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHH
Q 011236 88 ALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESL 157 (490)
Q Consensus 88 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 157 (490)
+.++++.+.+.|+ .+......+-..-...|+.+.|.++++.+. ++|+ .|...+.++-+.|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEG--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc--HHHHHHHHHHHcCchhhhh
Confidence 4567777777774 555555555444446688888888888888 6666 4778888888777765554
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.45 E-value=1.2 Score=24.20 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=18.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 386 SWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
+|..+...|...|++++|...|+++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666666777777777777777666
No 334
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.41 E-value=1.7 Score=38.60 Aligned_cols=93 Identities=16% Similarity=0.063 Sum_probs=59.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHH
Q 011236 356 LLGYSQKGMIEKADAVLKEIVKKGKTP-TPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWL 434 (490)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 434 (490)
...|.++|.+++|+..|...+. ..| |++++..-..+|.+...+..|..-...++.+.. .-...|..-+.+-
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK------LYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------HHHHHHHHHHHHH
Confidence 4457778888888888766543 677 777788888888888888777777777766210 1112333333344
Q ss_pred HcCCCHHHHHHHHHHHHhcccc
Q 011236 435 GDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 435 ~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
...|..++|.+-++...+..|.
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCcc
Confidence 4456666666666666666665
No 335
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.23 E-value=8.9 Score=27.50 Aligned_cols=49 Identities=8% Similarity=-0.063 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 011236 225 SMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVS 274 (490)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 274 (490)
+..+-++.+- ..++.|++....+.+.+|.+.+++.-|.++|+.++....
T Consensus 28 e~rrglN~l~-~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~ 76 (108)
T PF02284_consen 28 ELRRGLNNLF-GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG 76 (108)
T ss_dssp HHHHHHHHHT-TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh-ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 3444555555 556666666666666666666666666666666665443
No 336
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.02 E-value=5 Score=29.91 Aligned_cols=60 Identities=12% Similarity=0.153 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHH
Q 011236 403 AFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAH 467 (490)
Q Consensus 403 a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~ 467 (490)
..+-++.... ..+.|++.....-+++|.+.+|+..|.++|+-++...+. ..+|-.+++-+
T Consensus 68 vrkglN~l~~-----yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v~el 128 (149)
T KOG4077|consen 68 VRKGLNNLFD-----YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYVKEL 128 (149)
T ss_pred HHHHHHhhhc-----cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3444555555 567788888888888888888888888888888777666 44566665543
No 337
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.54 E-value=17 Score=29.88 Aligned_cols=143 Identities=11% Similarity=0.148 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHH-----HHHHHHhcCCHHHHHHHH
Q 011236 298 MMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNI-----ILLGYSQKGMIEKADAVL 372 (490)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~ 372 (490)
..++|..........-...|..++.+.. .+.. +......++.... ...+|.. +...+...|++++|..-+
T Consensus 38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL 112 (207)
T COG2976 38 GWRYWQSHQVEQAQEASAQYQNAIKAVQ-AKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQL 112 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4555554333333334456777777654 3333 4455555555541 2333332 334577888999998888
Q ss_pred HHHHHcCCCCCHHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHH
Q 011236 373 KEIVKKGKTPTPNSWS-----IIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFV 447 (490)
Q Consensus 373 ~~m~~~~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 447 (490)
+..... |....+. .|.+.....|.+++|+.+++.... .++ .......-.+.+...|+-++|+.-|
T Consensus 113 ~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-----~~w--~~~~~elrGDill~kg~k~~Ar~ay 182 (207)
T COG2976 113 KQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-----ESW--AAIVAELRGDILLAKGDKQEARAAY 182 (207)
T ss_pred HHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-----ccH--HHHHHHHhhhHHHHcCchHHHHHHH
Confidence 877754 2222333 344567778888888888887655 221 2233444556788889999999888
Q ss_pred HHHHhccc
Q 011236 448 SSLKIKVQ 455 (490)
Q Consensus 448 ~~~~~~~~ 455 (490)
++....++
T Consensus 183 ~kAl~~~~ 190 (207)
T COG2976 183 EKALESDA 190 (207)
T ss_pred HHHHHccC
Confidence 88877753
No 338
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.36 E-value=21 Score=30.88 Aligned_cols=209 Identities=10% Similarity=0.013 Sum_probs=135.8
Q ss_pred cCCCCCcchHHHHHHHH-HhcCCcCcHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCChHHHHHHHHHHHh--CC--
Q 011236 166 MGSFGSALNYNGIMCLY-TNTGQHEKIPDVLLDMKENGVPPDN---FSYRICINSYGARSELSSMENVLQEMES--QS-- 237 (490)
Q Consensus 166 ~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-- 237 (490)
.+-.||+..-|.--..- .+...+++|+.-|++..+....... .....++....+.|++++....|.++.. +.
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34567777655433221 2345788999999999874322222 2445678899999999999999998861 11
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChh----hHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCC
Q 011236 238 HISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDAL----GYNHLISHYASLGNKDEMMKFWGLQKIKCKKQL 313 (490)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 313 (490)
.-..+....|++++.-..+.+.+--..+|+.-.+......|.. |-+-|...|...+++.....+++++...+...+
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 1123456677888888888888887777776544322213433 335678888889999999999998887765222
Q ss_pred h-----------hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCchhHHHHHHH-----HHhcCCHHHHHHHHHHH
Q 011236 314 N-----------RDYITMLGSLVKIGELEEAEKMLEEWELSC-YCYDFRVPNIILLG-----YSQKGMIEKADAVLKEI 375 (490)
Q Consensus 314 ~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m 375 (490)
. ..|..=|..|....+-.....++++..... --|.+.... +|+- ..+.|++++|..-|-+.
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHH
Confidence 2 346777888888888888888888765432 223433333 3333 35678888886544333
No 339
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.15 E-value=38 Score=33.68 Aligned_cols=273 Identities=15% Similarity=0.045 Sum_probs=156.9
Q ss_pred HHHHHHHHHHccccCCC-hhHHHHHH--HH-HHhcCChhHHHHHHHHHHh-------cCCCCCcchHHHHHHHHHhcC--
Q 011236 120 LESAETYFNSLNDEDKV-DKLYGALL--NC-YVREGLVDESLSLMQKMKE-------MGSFGSALNYNGIMCLYTNTG-- 186 (490)
Q Consensus 120 ~~~A~~~~~~~~~~~p~-~~~~~~li--~~-~~~~g~~~~a~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~-- 186 (490)
...|..+++.....+-. ......++ .+ +....+.+.|+..|+.+.+ .| +....+-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45788888888776632 22222222 22 4467789999999999877 55 4556777888887765
Q ss_pred ---CcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH----HcCC
Q 011236 187 ---QHEKIPDVLLDMKENGVPPDNFSYRICINSYGA-RSELSSMENVLQEMESQSHISMDWGTYSTVANYYI----IAGL 258 (490)
Q Consensus 187 ---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~ 258 (490)
+.+.|..++...-+.|. |+...+-..+..... ..+...|.++|.... +.|. +...-+ +..+|. -..+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa-~~G~-~~A~~~--la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAA-KAGH-ILAIYR--LALCYELGLGVERN 379 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHH-HcCC-hHHHHH--HHHHHHhCCCcCCC
Confidence 44558999999888876 565554444443333 356789999999998 6665 333332 333332 2347
Q ss_pred HHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHH-H---Hh----cCCH
Q 011236 259 KEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGS-L---VK----IGEL 330 (490)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~---~~----~~~~ 330 (490)
.+.|..++.+.-+.+. +...--...+..+.. ++++.+...+..+...+. ....+-...+.. . .. ..+.
T Consensus 380 ~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~-~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGN--PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY-EVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred HHHHHHHHHHHHHccC--hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh-hHHhhHHHHHHHhccccccccccccch
Confidence 8889999999887774 333223333444444 777777777775655544 222222211111 1 11 1244
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----ccCCHHH
Q 011236 331 EEAEKMLEEWELSCYCYDFRVPNIILLGYSQK----GMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYA----DKNNMEK 402 (490)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~~~~~~ 402 (490)
..+...+......| +......+-+.|... .+++.|...+......+ ....-.+...+- -.. +..
T Consensus 456 ~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~ 527 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHL 527 (552)
T ss_pred hHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHH
Confidence 55555565555443 333334444444332 34777777777776654 222222222221 223 677
Q ss_pred HHHHHHHHHH
Q 011236 403 AFECMKEALA 412 (490)
Q Consensus 403 a~~~~~~~~~ 412 (490)
|.++++.+.+
T Consensus 528 a~~~~~~~~~ 537 (552)
T KOG1550|consen 528 AKRYYDQASE 537 (552)
T ss_pred HHHHHHHHHh
Confidence 7788877766
No 340
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.01 E-value=1.2 Score=23.91 Aligned_cols=26 Identities=12% Similarity=0.085 Sum_probs=14.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhccc
Q 011236 430 ILDWLGDNRDVEEVEAFVSSLKIKVQ 455 (490)
Q Consensus 430 l~~~~~~~g~~~~a~~~~~~~~~~~~ 455 (490)
+..++.+.|++++|.+.|+++.+..|
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34444555556666665555555444
No 341
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=85.62 E-value=15 Score=31.06 Aligned_cols=142 Identities=13% Similarity=0.104 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 011236 317 YITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD 396 (490)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 396 (490)
..--+..|.+.-++.-|.....++.+ | ..+ .+-+--|.+..+..--.++.+-....++.-+......++ +..
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiE----P-IQS-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIE----P-IQS-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhh----h-HHh-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 34445556666666655555555543 1 111 122233444444444444444444455555555555554 567
Q ss_pred cCCHHHHHHHHHHHHHhhhcCcCC-----------CcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHH
Q 011236 397 KNNMEKAFECMKEALAVHEENKFW-----------RPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALT 464 (490)
Q Consensus 397 ~~~~~~a~~~~~~~~~~~~~~~~~-----------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~ 464 (490)
.|+...|+..++.-... .|. .|.+.....++..|.+ +++++|.+++.++.+.|.. .+..+++.
T Consensus 205 ~GDMRQalNnLQst~~g----~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNG----FGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred cchHHHHHHHHHHHhcc----ccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 89999999988887761 221 4677777788877765 6899999999999999888 88888888
Q ss_pred HHHHhcC
Q 011236 465 EAHIRSG 471 (490)
Q Consensus 465 ~~~~~~g 471 (490)
+.+....
T Consensus 280 Rv~K~~~ 286 (333)
T KOG0991|consen 280 RVVKNMD 286 (333)
T ss_pred HHHHhcc
Confidence 8877666
No 342
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.42 E-value=2.4 Score=24.29 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011236 138 KLYGALLNCYVREGLVDESLSLMQKMKE 165 (490)
Q Consensus 138 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 165 (490)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566677777777777777777776544
No 343
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.07 E-value=13 Score=32.42 Aligned_cols=87 Identities=11% Similarity=0.015 Sum_probs=43.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh----
Q 011236 286 ISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQ---- 361 (490)
Q Consensus 286 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 361 (490)
|++++..++|.+++...-+.-....+........-|-.|.+.++...+.++-.......-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4555566666665554333333222333444444455556666666666655555543222223335555544433
Q ss_pred -cCCHHHHHHHH
Q 011236 362 -KGMIEKADAVL 372 (490)
Q Consensus 362 -~g~~~~A~~~~ 372 (490)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666665554
No 344
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.87 E-value=47 Score=33.59 Aligned_cols=373 Identities=15% Similarity=0.075 Sum_probs=179.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCC----CChhhHHHH-HHHHHhhcCHHHHHHHHHHccccC-----CChhHHHHH
Q 011236 74 RVIRQLRSRKRFKHALQVSEWMSGQGLA----FSVHDHAVQ-LDLIGKVRGLESAETYFNSLNDED-----KVDKLYGAL 143 (490)
Q Consensus 74 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~l 143 (490)
.++..+.+.+. ..|...+++.++.--. +-...+..+ +..+...++...|.+.++.+.... |...++-.+
T Consensus 105 ll~~i~~~~~~-~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNP-KAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCH-HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 34455555554 4488888887664322 222223333 223333479999999988765532 334455555
Q ss_pred HHHHH--hcCChhHHHHHHHHHHhcCC---------CCCcchHHHHHHHHH--hcCCcCcHHHHHHHHHH-------CC-
Q 011236 144 LNCYV--REGLVDESLSLMQKMKEMGS---------FGSALNYNGIMCLYT--NTGQHEKIPDVLLDMKE-------NG- 202 (490)
Q Consensus 144 i~~~~--~~g~~~~a~~~~~~m~~~~~---------~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~-------~~- 202 (490)
+.+.. +.+..+++.+.++++..... .|-..+|..+++.++ ..|+++.+...++++.+ ..
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~ 263 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPS 263 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCcc
Confidence 55544 45667778888877743321 234556666766554 56666676665554432 11
Q ss_pred C---C-------------------CCHHHH---------HHHHH--HHhccCChHHHHHHHHHHHh---C-----C-CCC
Q 011236 203 V---P-------------------PDNFSY---------RICIN--SYGARSELSSMENVLQEMES---Q-----S-HIS 240 (490)
Q Consensus 203 ~---~-------------------p~~~~~---------~~li~--~~~~~g~~~~a~~~~~~~~~---~-----~-~~~ 240 (490)
. . |....| .-++. ..+..+..+.|.+++++... + . ...
T Consensus 264 w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~ 343 (608)
T PF10345_consen 264 WPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPS 343 (608)
T ss_pred CCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 0 0 111111 11111 22334444455555554331 0 1 111
Q ss_pred CCH------HHHHH---------HHHHHHHcCCHHHHHHHHHHHhhhhccCCC-------hhhHHHHHHHHHhcCChhHH
Q 011236 241 MDW------GTYST---------VANYYIIAGLKEKAIIYLKKCEDIVSKSKD-------ALGYNHLISHYASLGNKDEM 298 (490)
Q Consensus 241 ~~~------~~~~~---------li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a 298 (490)
.+. ..+.. .+-..+-.+++..|...++.+.......|+ ...+....-.+...|+.+.|
T Consensus 344 ~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A 423 (608)
T PF10345_consen 344 ESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAA 423 (608)
T ss_pred cCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHH
Confidence 111 11111 122334578999999999998865432122 22222233334457999999
Q ss_pred HHHHH--------HHHHhcCCCChhhHHHH--HHHHHhc--CCHHH--HHHHHHHHHhc-CCCC--CchhHHH-HHHHHH
Q 011236 299 MKFWG--------LQKIKCKKQLNRDYITM--LGSLVKI--GELEE--AEKMLEEWELS-CYCY--DFRVPNI-ILLGYS 360 (490)
Q Consensus 299 ~~~~~--------~~~~~~~~~~~~~~~~l--~~~~~~~--~~~~~--a~~~~~~~~~~-~~~~--~~~~~~~-l~~~~~ 360 (490)
...|. .....+...+...+..+ +-.+... ....+ +.++++.+... .-.| +..++.. ++.++.
T Consensus 424 ~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~ 503 (608)
T PF10345_consen 424 LYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYN 503 (608)
T ss_pred HHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHh
Confidence 99997 33333333333333321 1112222 22223 66777766542 1122 2223333 333333
Q ss_pred hcCC--HHHHHHHHHHHHH-----cCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc--hhhHH--
Q 011236 361 QKGM--IEKADAVLKEIVK-----KGKT-PTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK--PSLVS-- 428 (490)
Q Consensus 361 ~~g~--~~~A~~~~~~m~~-----~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~-- 428 (490)
.... ..++...+.+..+ .+.. --..+++.+..-+. .|+..+............. -.|| ...|.
T Consensus 504 ~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~----k~~d~~~~LW~~v 578 (608)
T PF10345_consen 504 TFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAK----KSSDYSDQLWHLV 578 (608)
T ss_pred hCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHH----hhhhhhhHHHHHH
Confidence 2221 2244443332222 1111 11123343333444 6777776666555444221 1122 24453
Q ss_pred ---HHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 429 ---SILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 429 ---~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
.+...+...|+.++|.....+...
T Consensus 579 ~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 579 ASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 333457778999999988877653
No 345
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.48 E-value=53 Score=33.85 Aligned_cols=226 Identities=12% Similarity=0.046 Sum_probs=114.1
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcc-------hHHHHHH-HHHhcCCcCcHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 011236 148 VREGLVDESLSLMQKMKEMGSFGSAL-------NYNGIMC-LYTNTGQHEKIPDVLLDMKEN----GVPPDNFSYRICIN 215 (490)
Q Consensus 148 ~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~li~ 215 (490)
....++++|..++.+....-..|+.. .|+.|-. .....|+++++.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45788899998888876653333332 2333322 223567888888887776553 12345556667777
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCCHHHHH---HH--HHHHHHcCC--HHHHHHHHHHHhhhhccCC-----ChhhHH
Q 011236 216 SYGARSELSSMENVLQEMESQSHISMDWGTYS---TV--ANYYIIAGL--KEKAIIYLKKCEDIVSKSK-----DALGYN 283 (490)
Q Consensus 216 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~l--i~~~~~~~~--~~~a~~~~~~~~~~~~~~~-----~~~~~~ 283 (490)
+..-.|++++|..+..+.. +..-..+...+. .+ ...+...|+ +.+.+..|........... -..++.
T Consensus 506 a~~~~G~~~~Al~~~~~a~-~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAE-QMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHH-HHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7778899999888776665 322122323332 22 223455563 3333344444332211101 123344
Q ss_pred HHHHHHHh-cCChhHHHHHHHHHHHhcCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch----hHHHHH
Q 011236 284 HLISHYAS-LGNKDEMMKFWGLQKIKCKKQLNRD--YITMLGSLVKIGELEEAEKMLEEWELSCYCYDFR----VPNIIL 356 (490)
Q Consensus 284 ~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~ 356 (490)
.+..++.+ .+...++..-++......+.|-... +..|+......|+.++|...++++......+... .-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 44444443 1111222222221111111122222 2366777778899999998888877654333211 111122
Q ss_pred HH--HHhcCCHHHHHHHHHH
Q 011236 357 LG--YSQKGMIEKADAVLKE 374 (490)
Q Consensus 357 ~~--~~~~g~~~~A~~~~~~ 374 (490)
.. ....|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 3446777766665544
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.47 E-value=13 Score=30.79 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=51.9
Q ss_pred HHHHHHHHHHccccC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCCCcchHHHHHHHHHhcCCcCcHH
Q 011236 120 LESAETYFNSLNDED--KVDKLYGALLNCYVREGLVDESLSLMQKMKEM---GSFGSALNYNGIMCLYTNTGQHEKIP 192 (490)
Q Consensus 120 ~~~A~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~ 192 (490)
-+.|++.|-.+...+ -++.....|...|. ..+.++++.++.+..+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456777777776665 25555566665555 67788888888887664 33668888899999999988888774
No 347
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.46 E-value=7.6 Score=34.68 Aligned_cols=54 Identities=15% Similarity=0.048 Sum_probs=37.3
Q ss_pred HHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011236 288 HYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWEL 342 (490)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (490)
-|.+.|.+++|++.|...+...+ -+..++..-..+|.+...+..|+.-......
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 47777888888888776665543 4667777777777777777777666555544
No 348
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=84.35 E-value=36 Score=31.88 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 011236 141 GALLNCYVREGLVDESLSLMQKMK 164 (490)
Q Consensus 141 ~~li~~~~~~g~~~~a~~~~~~m~ 164 (490)
|-.+.-|...|+..+|.+..+++.
T Consensus 218 n~~l~eyv~~getrea~rciR~L~ 241 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELG 241 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhC
Confidence 344555666666666666665553
No 349
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.31 E-value=1.3 Score=23.74 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=6.3
Q ss_pred hhcCHHHHHHHHHHcc
Q 011236 116 KVRGLESAETYFNSLN 131 (490)
Q Consensus 116 ~~~~~~~A~~~~~~~~ 131 (490)
+.|++++|.+.|+.+.
T Consensus 12 ~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 12 KLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 3334444444443333
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.07 E-value=3.8 Score=27.71 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=34.0
Q ss_pred ccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHH
Q 011236 396 DKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFV 447 (490)
Q Consensus 396 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~ 447 (490)
...+.++|+..|+.+++.. .-.|+. .++..++.+++..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKI----TDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhc----CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888722 112222 57778888888888888877654
No 351
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=84.03 E-value=14 Score=26.82 Aligned_cols=82 Identities=13% Similarity=0.160 Sum_probs=49.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 011236 81 SRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLM 160 (490)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 160 (490)
.....++|..+.+++...+. ....+...-+..+.+.|++++| +..-.....||...|-+|.. .+.|--+++...+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 45667888888888888873 2233333345566788888888 33334333477777765543 4777777887777
Q ss_pred HHHHhcC
Q 011236 161 QKMKEMG 167 (490)
Q Consensus 161 ~~m~~~~ 167 (490)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 7776554
No 352
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.80 E-value=13 Score=30.00 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-----------CHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHH
Q 011236 366 EKADAVLKEIVKKGKTPTPNSWSIIAAGYADKN-----------NMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWL 434 (490)
Q Consensus 366 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 434 (490)
++|..-|++.+..++. ...++..+..+|...+ .+++|.+.|+++.+ ..|+..+|..-+...
T Consensus 52 edAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~-------~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD-------EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh-------cCCCcHHHHHHHHHH
Confidence 4444444555544322 2345666666654432 25566666666665 568888888877766
Q ss_pred H
Q 011236 435 G 435 (490)
Q Consensus 435 ~ 435 (490)
.
T Consensus 124 ~ 124 (186)
T PF06552_consen 124 A 124 (186)
T ss_dssp H
T ss_pred H
Confidence 4
No 353
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.27 E-value=42 Score=31.79 Aligned_cols=125 Identities=10% Similarity=0.033 Sum_probs=81.1
Q ss_pred HhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCH
Q 011236 41 SRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGL 120 (490)
Q Consensus 41 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (490)
..-...|+...+-.+++..+++....|+...+.+.| +...|+++.+.+.+......- .....+...+++...+.|++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~-~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKII-GTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhh-cCCchHHHHHHHhhhchhhH
Confidence 333445666666666777666555555554444443 446788888888877655432 34566777788888888899
Q ss_pred HHHHHHHHHccccC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 011236 121 ESAETYFNSLNDED-KVDKLYGALLNCYVREGLVDESLSLMQKMKEMGS 168 (490)
Q Consensus 121 ~~A~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 168 (490)
++|..+-+-|.... .++.+........-..|-++++...|++....+.
T Consensus 374 ~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 374 REALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 99988888887665 2444444433444456778888888888766543
No 354
>PRK09687 putative lyase; Provisional
Probab=82.77 E-value=34 Score=30.41 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCH----HHHHHHHHHccccCCChhHHHHH
Q 011236 68 SELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGL----ESAETYFNSLNDEDKVDKLYGAL 143 (490)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~p~~~~~~~l 143 (490)
|.......+..+...|. +.+...+..+.+. .++..-...+.+++..|+. .++...+..+...+++..+-...
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A 111 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASA 111 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHH
Confidence 44444444555544443 2233333333332 2444444455555555542 33444444443334444444444
Q ss_pred HHHHHh
Q 011236 144 LNCYVR 149 (490)
Q Consensus 144 i~~~~~ 149 (490)
+.++..
T Consensus 112 ~~aLG~ 117 (280)
T PRK09687 112 INATGH 117 (280)
T ss_pred HHHHhc
Confidence 444433
No 355
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.39 E-value=42 Score=31.11 Aligned_cols=95 Identities=12% Similarity=0.071 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHC---------CCCCC
Q 011236 138 KLYGALLNCYVREGLVDESLSLMQKMKEMG--SFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKEN---------GVPPD 206 (490)
Q Consensus 138 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------~~~p~ 206 (490)
..+.-+.+.|..+|+++.|++.|.+.+..- .+-.+..|-.+|..-.-.|+|..+.....+..+. -+++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456778888999999999999999865431 1113445666777777788988888777776654 13334
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHH
Q 011236 207 NFSYRICINSYGARSELSSMENVLQEME 234 (490)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~a~~~~~~~~ 234 (490)
...+..+.+.+.+ ++..|.+.|-...
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCC
Confidence 4445555544443 6676666655443
No 356
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.33 E-value=3.1 Score=22.50 Aligned_cols=31 Identities=10% Similarity=-0.070 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 011236 425 SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQ 455 (490)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 455 (490)
.+|..+...+...|++++|...|++..+..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567788888999999999999998876544
No 357
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.52 E-value=64 Score=32.64 Aligned_cols=89 Identities=19% Similarity=0.192 Sum_probs=42.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC-CCChhhHHHHHHHHHh-
Q 011236 249 VANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCK-KQLNRDYITMLGSLVK- 326 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~- 326 (490)
....+.-.|+++.|++++-... ... .+.+++...+..|.-.+-.+... ..+..... .|....+..||..|++
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~--~~~-~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNE--FNR-VDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-H-HHHHHHHHHHHHTT---------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHhhc--cCc-ccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHH
Confidence 4456777899999999887711 222 45566655555443322222211 22222211 1223668888888876
Q ss_pred --cCCHHHHHHHHHHHHhc
Q 011236 327 --IGELEEAEKMLEEWELS 343 (490)
Q Consensus 327 --~~~~~~a~~~~~~~~~~ 343 (490)
..+..+|.+.+-.+...
T Consensus 338 F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 338 FEITDPREALQYLYLICLF 356 (613)
T ss_dssp TTTT-HHHHHHHHHGGGGS
T ss_pred HhccCHHHHHHHHHHHHHc
Confidence 45777888887766553
No 358
>PHA02875 ankyrin repeat protein; Provisional
Probab=81.41 E-value=50 Score=31.37 Aligned_cols=15 Identities=13% Similarity=0.060 Sum_probs=7.4
Q ss_pred HHhhcCHHHHHHHHH
Q 011236 114 IGKVRGLESAETYFN 128 (490)
Q Consensus 114 ~~~~~~~~~A~~~~~ 128 (490)
.+..|+.+.+..+++
T Consensus 9 A~~~g~~~iv~~Ll~ 23 (413)
T PHA02875 9 AILFGELDIARRLLD 23 (413)
T ss_pred HHHhCCHHHHHHHHH
Confidence 334455555555444
No 359
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=81.10 E-value=63 Score=32.33 Aligned_cols=145 Identities=12% Similarity=0.050 Sum_probs=58.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHH------H----HH-HHHHHhhhhccCCChhhHHHHHHH
Q 011236 220 RSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEK------A----II-YLKKCEDIVSKSKDALGYNHLISH 288 (490)
Q Consensus 220 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~------a----~~-~~~~~~~~~~~~~~~~~~~~l~~~ 288 (490)
.|++..+++....+- .+..+-..+.+.+...|-.+. . .+ ++-.--..-. .+...|..-+..
T Consensus 310 ~~d~~~vL~~~~~~~------~~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ll~YA~~L~--s~~~lW~vai~y 381 (566)
T PF07575_consen 310 EGDIESVLKEISSLF------DDWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREYLLLEYASSLM--SHHSLWQVAIGY 381 (566)
T ss_dssp TS--GGGHHHHHHH--------HHHHHHHHHHHHHHTTSS--SS-----TS-HHHHHHHHHHHHHH--T-TTTHHHHHHH
T ss_pred ccCHHHHHHHHHHHc------cchhHHHHHHHHHHhcCccccccccccccccHHHHHHHHHHHHHh--cCcchHHHHHHH
Confidence 577777777776663 232333345555555555441 0 00 0000000011 233334444444
Q ss_pred HHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHH
Q 011236 289 YASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKA 368 (490)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 368 (490)
+...++.. ....+..+.+-+..+.....-++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..+.++|+....
T Consensus 382 L~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v 457 (566)
T PF07575_consen 382 LSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLV 457 (566)
T ss_dssp HHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------
T ss_pred HHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHH
Confidence 44333222 45555555555556666677788888888888888887776654311 122344455556666666555
Q ss_pred HHHHHHHH
Q 011236 369 DAVLKEIV 376 (490)
Q Consensus 369 ~~~~~~m~ 376 (490)
..+...+.
T Consensus 458 ~~i~~~ll 465 (566)
T PF07575_consen 458 TRIADRLL 465 (566)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 55544444
No 360
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.90 E-value=38 Score=29.68 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=9.6
Q ss_pred HHHHHHHcCCCHHHHHHHH
Q 011236 429 SILDWLGDNRDVEEVEAFV 447 (490)
Q Consensus 429 ~l~~~~~~~g~~~~a~~~~ 447 (490)
-++..+.+.|.+.+|..+.
T Consensus 130 Kli~l~y~~~~YsdalalI 148 (421)
T COG5159 130 KLIYLLYKTGKYSDALALI 148 (421)
T ss_pred HHHHHHHhcccHHHHHHHH
Confidence 3444455555555555443
No 361
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.72 E-value=74 Score=32.88 Aligned_cols=223 Identities=13% Similarity=0.052 Sum_probs=123.2
Q ss_pred HhcCCcCcHHHHHHHHHHCCCCCCH----H---HHHHHHH-HHhccCChHHHHHHHHHHHh---CCCCCCCHHHHHHHHH
Q 011236 183 TNTGQHEKIPDVLLDMKENGVPPDN----F---SYRICIN-SYGARSELSSMENVLQEMES---QSHISMDWGTYSTVAN 251 (490)
Q Consensus 183 ~~~~~~~~a~~~~~~m~~~~~~p~~----~---~~~~li~-~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~li~ 251 (490)
....++.+|..+..+....-..|+. . .++.+-. .....|+++.|.++.+.... .....+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3567889999998887654222222 1 2333322 22346888998888776652 2223355677777888
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccCCChhhH---HHHHH--HHHhcCChh--HHHHHHHHHHHhcC------CCChhhHH
Q 011236 252 YYIIAGLKEKAIIYLKKCEDIVSKSKDALGY---NHLIS--HYASLGNKD--EMMKFWGLQKIKCK------KQLNRDYI 318 (490)
Q Consensus 252 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~--~~~~~~~~~--~a~~~~~~~~~~~~------~~~~~~~~ 318 (490)
+..-.|++++|..+..+..+.... -+...+ ..+.. .+...|+.. +....+........ .+-..++.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~-~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQ-HDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888999999999998887765443 444433 33322 234456322 23333332222211 12223455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCc--hh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHH
Q 011236 319 TMLGSLVKIGELEEAEKMLEEWELSC--YCYDF--RV--PNIILLGYSQKGMIEKADAVLKEIVKKGKTP----TPNSWS 388 (490)
Q Consensus 319 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~--~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~ 388 (490)
.+..++.+ .+.+..-.....+.| ..|.. .. +..|+..+...|+.++|...++++......+ +..+-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 55555555 333332222222221 12221 12 2357777888999999999999887653333 322222
Q ss_pred HHHH--HHhccCCHHHHHHHHHH
Q 011236 389 IIAA--GYADKNNMEKAFECMKE 409 (490)
Q Consensus 389 ~l~~--~~~~~~~~~~a~~~~~~ 409 (490)
..+. .....|+...+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 2222 33467888888777766
No 362
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.10 E-value=24 Score=30.77 Aligned_cols=87 Identities=15% Similarity=0.097 Sum_probs=43.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccC--CChhHHHHHHHHHH---
Q 011236 74 RVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED--KVDKLYGALLNCYV--- 148 (490)
Q Consensus 74 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~li~~~~--- 148 (490)
.=|.+++..++|.+++...-+.-+..-+..+.+...-|-.|.+.+.+..+.++-..-.+.. .+..-|.+++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 3355666666666655544333333224455555555666666666666655554433321 12222544444333
Q ss_pred --hcCChhHHHHHH
Q 011236 149 --REGLVDESLSLM 160 (490)
Q Consensus 149 --~~g~~~~a~~~~ 160 (490)
=.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 356666666555
No 363
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.80 E-value=20 Score=25.72 Aligned_cols=80 Identities=19% Similarity=0.147 Sum_probs=49.7
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 011236 83 KRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQK 162 (490)
Q Consensus 83 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 162 (490)
+..++|..+-+++...+- -...+...-+..+...|++++|..+.+.+. .||...|-+|.. .+.|-.++...-+.+
T Consensus 19 HcHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~--~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLC--YPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred hHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCC--CchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 456777777777776652 122222333456667788888888777764 477777766544 356666666666666
Q ss_pred HHhcC
Q 011236 163 MKEMG 167 (490)
Q Consensus 163 m~~~~ 167 (490)
|...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 66654
No 364
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=79.71 E-value=59 Score=31.13 Aligned_cols=77 Identities=12% Similarity=-0.028 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhc-CHHHHHHHHHHccccCCC-hhHHHH
Q 011236 65 QKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVR-GLESAETYFNSLNDEDKV-DKLYGA 142 (490)
Q Consensus 65 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~-~~~~~~ 142 (490)
..-|+..|..-+..+.+.+.+.+.-.+|..|.... |.++..+..........+ +++.|+.+|....+..|+ +..|-.
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 44488888888888777777888888888888765 345555554444443333 388888888887777764 444433
No 365
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.12 E-value=60 Score=30.92 Aligned_cols=362 Identities=14% Similarity=0.056 Sum_probs=186.6
Q ss_pred cCChhHHHHHHHHHHhC--CC----CCChhhHHHHHHHHHhhc-CHHHHHHHHHHccccCCChhHH-----HHHHHHHHh
Q 011236 82 RKRFKHALQVSEWMSGQ--GL----AFSVHDHAVQLDLIGKVR-GLESAETYFNSLNDEDKVDKLY-----GALLNCYVR 149 (490)
Q Consensus 82 ~~~~~~a~~~~~~~~~~--~~----~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~-----~~li~~~~~ 149 (490)
..+++.|..-+++.... .+ ...-+.+..+...++... .+..|..+++...+...+...| ..|+..+.-
T Consensus 60 T~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~i 139 (629)
T KOG2300|consen 60 TKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHII 139 (629)
T ss_pred hccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhh
Confidence 35577777766654332 11 223456667777777766 7788888888777655333334 235666677
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcchHHHHHHHH------HhcCCcCcHHHH---HHHHHHCCCCCCHHH--------HHH
Q 011236 150 EGLVDESLSLMQKMKEMGSFGSALNYNGIMCLY------TNTGQHEKIPDV---LLDMKENGVPPDNFS--------YRI 212 (490)
Q Consensus 150 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~------~~~~~~~~a~~~---~~~m~~~~~~p~~~~--------~~~ 212 (490)
..++..|.+++.-=-+. -.|-...|..++..+ ....+..++.++ ..+|.+. +.+|... .+.
T Consensus 140 dkD~~sA~elLavga~s-Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~l 217 (629)
T KOG2300|consen 140 DKDFPSALELLAVGAES-ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVL 217 (629)
T ss_pred hccchhHHHHHhccccc-cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHH
Confidence 78888888774321111 111222332222211 122344444444 4444443 5555432 122
Q ss_pred HHHHHhccCChHHHHHHHHHHHh--CCCC------------CCCHHHHHHHHH----H---------HHHcCCHHHHHHH
Q 011236 213 CINSYGARSELSSMENVLQEMES--QSHI------------SMDWGTYSTVAN----Y---------YIIAGLKEKAIIY 265 (490)
Q Consensus 213 li~~~~~~g~~~~a~~~~~~~~~--~~~~------------~~~~~~~~~li~----~---------~~~~~~~~~a~~~ 265 (490)
-+..|.-.|+...+...++++.. +.+- .|+...+..+.+ + -...|-+++|.++
T Consensus 218 ql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~ 297 (629)
T KOG2300|consen 218 QLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKY 297 (629)
T ss_pred HHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHH
Confidence 23345567777777776666541 1111 122222211111 1 1123556666665
Q ss_pred HHHHhhhhccC--CC--hhh--------HHHHHHHHHhcCChhHHHHHHHHHHHhcC-CCChhh-------HH-HHHHHH
Q 011236 266 LKKCEDIVSKS--KD--ALG--------YNHLISHYASLGNKDEMMKFWGLQKIKCK-KQLNRD-------YI-TMLGSL 324 (490)
Q Consensus 266 ~~~~~~~~~~~--~~--~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-------~~-~l~~~~ 324 (490)
-+++....... .| ... ...++.+-.-.|+..+|++-...|..-.. .|.+.. .. .+...+
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 55543321110 11 111 12223333457999999998887876544 233211 22 233344
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH--------HHHH-
Q 011236 325 VKIGELEEAEKMLEEWELSCYCYDFRVP--NIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSI--------IAAG- 393 (490)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~--------l~~~- 393 (490)
+..+-++.|+.-|....+.--..|...+ ..+...|.+.|+.+.-.++++.+-- |+..++.+ ++.+
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p----~nt~s~ssq~l~a~~~~v~gl 453 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGP----LNTNSLSSQRLEASILYVYGL 453 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCC----CCCCcchHHHHHHHHHHHHHH
Confidence 5678899999999887765333343332 2355668888877666666555432 22222211 1112
Q ss_pred -HhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHH
Q 011236 394 -YADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSS 449 (490)
Q Consensus 394 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 449 (490)
....+++.+|..++.+-++...-..-.+...-....+...+...|+..++.+...-
T Consensus 454 faf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 454 FAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred HHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccch
Confidence 24689999999999998872210001111222233444556677888888877653
No 366
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.48 E-value=4.4 Score=20.53 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=7.6
Q ss_pred HHHHHHhcCChhHHHHHH
Q 011236 143 LLNCYVREGLVDESLSLM 160 (490)
Q Consensus 143 li~~~~~~g~~~~a~~~~ 160 (490)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444444444444443
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.77 E-value=3.5 Score=24.34 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=14.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 011236 320 MLGSLVKIGELEEAEKMLEEWELS 343 (490)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~~~ 343 (490)
+..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455566666666666666665543
No 368
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.30 E-value=5.4 Score=23.58 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011236 354 IILLGYSQKGMIEKADAVLKEIVKKG 379 (490)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 379 (490)
.|..+|...|+.+.|..+++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 36778888888888888888888654
No 369
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.16 E-value=1e+02 Score=32.39 Aligned_cols=167 Identities=19% Similarity=0.139 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhhc-c-CCChhhHHHHHHHHHhcCCh--hHHHHHHHHHHHhcCCCChhhHH---
Q 011236 246 YSTVANYYIIAGLKEKAIIYLKKCEDIVS-K-SKDALGYNHLISHYASLGNK--DEMMKFWGLQKIKCKKQLNRDYI--- 318 (490)
Q Consensus 246 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~--- 318 (490)
|..|+..|...|+.++|++++.+..+... . ..-...+-.++..+.+.+.. +-.+++-+......+......+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 67788888888888888888888766331 1 01112333455555555544 55555544444433311111111
Q ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcC--------CHHHHHHH-----HHHHH
Q 011236 319 ---------TMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKG--------MIEKADAV-----LKEIV 376 (490)
Q Consensus 319 ---------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~-----~~~m~ 376 (490)
..+-.|......+-+..+++.+....-.++....+.++..|++.= +-+++.+. +..+.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence 123345566777788888888887766667777788888776531 22233333 11121
Q ss_pred H--cCCCC--------CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 377 K--KGKTP--------TPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 377 ~--~~~~p--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
+ ....| ....|....-.+.+.|+.++|+.++-..+.
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1 11222 122343333444588999999988866554
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.91 E-value=9.8 Score=25.81 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=19.5
Q ss_pred hcCChhHHHHHHHHHHHhcCCCCh--hhHHHHHHHHHhcCCHHHHHH
Q 011236 291 SLGNKDEMMKFWGLQKIKCKKQLN--RDYITMLGSLVKIGELEEAEK 335 (490)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~ 335 (490)
..++.++|+..|....+....+.. .++..++.+|+..|++.++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544444332211 233444455555555444433
No 371
>PRK10941 hypothetical protein; Provisional
Probab=76.79 E-value=37 Score=29.89 Aligned_cols=78 Identities=9% Similarity=0.043 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHH
Q 011236 353 NIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILD 432 (490)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 432 (490)
+.+-.+|.+.++++.|+++.+.+....+. |+.-+.--.-.|.+.|.+..|..-++..++..| -.|+.......+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P----~dp~a~~ik~ql~ 259 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP----EDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC----CchhHHHHHHHHH
Confidence 34566678888888888888888877554 666677677778888888888888877776332 2255555555554
Q ss_pred HHH
Q 011236 433 WLG 435 (490)
Q Consensus 433 ~~~ 435 (490)
...
T Consensus 260 ~l~ 262 (269)
T PRK10941 260 SIE 262 (269)
T ss_pred HHh
Confidence 443
No 372
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.06 E-value=80 Score=30.21 Aligned_cols=104 Identities=15% Similarity=0.142 Sum_probs=60.8
Q ss_pred hcCCHHHHHHHHHHHHhc---CCCCC----c-hhHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCCH------
Q 011236 326 KIGELEEAEKMLEEWELS---CYCYD----F-RVPNIILLGYSQKGMIEKADAVLKEIVK-------KGKTPTP------ 384 (490)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~---~~~~~----~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~-------~~~~p~~------ 384 (490)
-.|++.+|.+++...--. |...+ . ..||.|.-.+.+.|.+.-+..+|.+..+ .|++|..
T Consensus 252 ~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~ 331 (696)
T KOG2471|consen 252 AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQ 331 (696)
T ss_pred HhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhc
Confidence 457777777766543211 11111 1 1234444445556666666666655543 3544321
Q ss_pred -----HHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHc
Q 011236 385 -----NSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGD 436 (490)
Q Consensus 385 -----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 436 (490)
.+|| ..-.|...|++-.|.+.|.++.. -+..++..|..+..+|..
T Consensus 332 nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~------vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 332 NKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVH------VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHH------HHhcCcHHHHHHHHHHHH
Confidence 1333 23457788888899999988887 455777888888888764
No 373
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=74.36 E-value=1e+02 Score=31.20 Aligned_cols=120 Identities=21% Similarity=0.143 Sum_probs=84.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHc
Q 011236 358 GYSQKGMIEKADAVLKEIVKKG-KTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGD 436 (490)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 436 (490)
++..-|+.++|..+.++|.... +..-..-.-++..+|+-.|+..-..+++.-++. ...-|..-...+.-++.-
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs------D~nDDVrRaAVialGFVl 583 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS------DVNDDVRRAAVIALGFVL 583 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccccc------ccchHHHHHHHHHheeeE
Confidence 3455677788888888887642 111112234566788888888877888877665 444555555555556777
Q ss_pred CCCHHHHHHHHHHHHhcccc---hhhhHHHHHHHHhcC-CcHHHHHHHHHh
Q 011236 437 NRDVEEVEAFVSSLKIKVQK---RNMYHALTEAHIRSG-QEVDGLLESMKA 483 (490)
Q Consensus 437 ~g~~~~a~~~~~~~~~~~~~---~~~~~~l~~~~~~~g-~~a~~~~~~m~~ 483 (490)
..+.+....+.+.+.+...+ -.+--.|+-+|...| .+|+.+++-|..
T Consensus 584 ~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 584 FRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred ecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 78899988888888776554 445567888888888 999999998875
No 374
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=74.19 E-value=22 Score=30.95 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=44.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 011236 387 WSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSL 450 (490)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 450 (490)
...+..-|.+.|++++|.++|+.+...+..+.-..+...+...+..++.+.|+.+....+.=++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455667888888888888888886655433334555566777777777888888777665444
No 375
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.34 E-value=1.2e+02 Score=31.45 Aligned_cols=257 Identities=12% Similarity=0.064 Sum_probs=117.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhH
Q 011236 76 IRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDE 155 (490)
Q Consensus 76 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 155 (490)
=+.|...|+|+.|++.-+.-. ..-..++..-...|...+++..|-+++.++.+ .+..+.--+....+.+
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~p----~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~------~FEEVaLKFl~~~~~~- 433 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTRP----DALETVLLKQADFLFQDKEYLRAAEIYAETLS------SFEEVALKFLEINQER- 433 (911)
T ss_pred HHHHHhcchHHHHHHhccCCH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh------hHHHHHHHHHhcCCHH-
Confidence 345566777887776643220 00122333345566777888888888877632 3444444455555544
Q ss_pred HHHHHHHHHhcCCCCCcchHHH-----HHHHHH-hcCCcC----cHHHHHHH--------HHHC-CCCCCHHHHHHHHHH
Q 011236 156 SLSLMQKMKEMGSFGSALNYNG-----IMCLYT-NTGQHE----KIPDVLLD--------MKEN-GVPPDNFSYRICINS 216 (490)
Q Consensus 156 a~~~~~~m~~~~~~p~~~~~~~-----l~~~~~-~~~~~~----~a~~~~~~--------m~~~-~~~p~~~~~~~li~~ 216 (490)
+++.|-.=+-..++|...+--. ++..|. +.++.+ ++..-++. +... ...-+...+.++...
T Consensus 434 ~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l 513 (911)
T KOG2034|consen 434 ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQL 513 (911)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHH
Confidence 3333222111123333332222 222222 222222 22221111 1110 011122233344445
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChh
Q 011236 217 YGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKD 296 (490)
Q Consensus 217 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 296 (490)
+...|+.+....+-.-+. + |..++.-++..+.+++|++++..-. +...+-...-.+ ....+.
T Consensus 514 ~~~~~~~e~ll~fA~l~~-d---------~~~vv~~~~q~e~yeeaLevL~~~~-------~~el~yk~ap~L-i~~~p~ 575 (911)
T KOG2034|consen 514 LASHGRQEELLQFANLIK-D---------YEFVVSYWIQQENYEEALEVLLNQR-------NPELFYKYAPEL-ITHSPK 575 (911)
T ss_pred HHHccCHHHHHHHHHHHH-H---------HHHHHHHHHHHHHHHHHHHHHHhcc-------chhhHHHhhhHH-HhcCcH
Confidence 556677777666555554 2 4458888888888888888887631 111111111111 122333
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCC
Q 011236 297 EMMKFWGLQKIKCKKQLNRDYITMLGSLVKIG---ELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGM 364 (490)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (490)
+....|... +...+..-...++..+.+.+ ....+...++--...-...+...+|.++..|++..+
T Consensus 576 ~tV~~wm~~---~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 576 ETVSAWMAQ---KDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred HHHHHHHHc---cccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc
Confidence 333333221 12233333444444444442 233444444433333233466677888877776544
No 376
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=73.28 E-value=32 Score=25.89 Aligned_cols=48 Identities=8% Similarity=-0.049 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 011236 226 MENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVS 274 (490)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 274 (490)
..+-+..+. ..++.|++.....-++++.+.+++..|.++|+.++....
T Consensus 68 vrkglN~l~-~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 68 VRKGLNNLF-DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred HHHHHHhhh-ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 334444444 555556666666666666666666666666666554433
No 377
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=73.22 E-value=31 Score=25.38 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 011236 282 YNHLISHYASLGNKDEMMKFWGLQKI 307 (490)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (490)
|..++..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77788888888888888888876665
No 378
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=72.68 E-value=22 Score=29.50 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=26.9
Q ss_pred CCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 011236 420 WRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQ 455 (490)
Q Consensus 420 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 455 (490)
..|++.+|..++.++...|+.++|.++..++....|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 557777777777777777777777777777777666
No 379
>PRK10941 hypothetical protein; Provisional
Probab=72.49 E-value=64 Score=28.48 Aligned_cols=74 Identities=11% Similarity=0.013 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC-CCChhhHHHHHH
Q 011236 247 STVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCK-KQLNRDYITMLG 322 (490)
Q Consensus 247 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 322 (490)
+.+-.+|.+.++++.|+++.+.+..-.+ .++.-+.--.-.|.+.|.+..|..=++......+ .|+.......+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P--~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDP--EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 4455677777788888877777777655 4555566566667777777777777776666655 344444444333
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.33 E-value=46 Score=32.47 Aligned_cols=85 Identities=9% Similarity=0.065 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011236 256 AGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEK 335 (490)
Q Consensus 256 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 335 (490)
.|+...|...+.......+. ...+..-.|.+...+.|-...|-.++.+..... ...+.++..+.+++....+++.|.+
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~-~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPL-QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred cCCcHHHHHHHHHHhccChh-hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 34444444444443332222 222233333344444444444444444333332 1333344444444444455555555
Q ss_pred HHHHHHh
Q 011236 336 MLEEWEL 342 (490)
Q Consensus 336 ~~~~~~~ 342 (490)
.|++..+
T Consensus 698 ~~~~a~~ 704 (886)
T KOG4507|consen 698 AFRQALK 704 (886)
T ss_pred HHHHHHh
Confidence 5554444
No 381
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.02 E-value=71 Score=28.27 Aligned_cols=58 Identities=9% Similarity=-0.061 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHHH
Q 011236 425 SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESMK 482 (490)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m~ 482 (490)
.++..+...|..+|.+.+|.++.++....+|- ...|-.|+..+...| -.|..-+++|.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34556667888999999999999999998888 888888999999999 45666666664
No 382
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=71.90 E-value=41 Score=25.54 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcccc---hhhhHHHHHHHHhcC--CcHHHHHH
Q 011236 442 EVEAFVSSLKIKVQK---RNMYHALTEAHIRSG--QEVDGLLE 479 (490)
Q Consensus 442 ~a~~~~~~~~~~~~~---~~~~~~l~~~~~~~g--~~a~~~~~ 479 (490)
.+..+|+.|.+.+.. +..|......+...| ++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555554433 555555555555555 55555554
No 383
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.73 E-value=70 Score=28.09 Aligned_cols=86 Identities=17% Similarity=0.013 Sum_probs=40.5
Q ss_pred HHhcCCHHHHHHHHHHH----HhcCCCCCchhHHHHHHHHHhcCCHH-HHHHHHHHHHHc-----CCCCCHHHHHHHHHH
Q 011236 324 LVKIGELEEAEKMLEEW----ELSCYCYDFRVPNIILLGYSQKGMIE-KADAVLKEIVKK-----GKTPTPNSWSIIAAG 393 (490)
Q Consensus 324 ~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~m~~~-----~~~p~~~~~~~l~~~ 393 (490)
+.+.|+...|.++-..+ .+.+.+.+......++..+...+.-+ +-.++.+.+++- ...-|+.....+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 45566665554444333 33355555555555555555443222 234444444432 122355666677777
Q ss_pred HhccCCHHHHHHHHHH
Q 011236 394 YADKNNMEKAFECMKE 409 (490)
Q Consensus 394 ~~~~~~~~~a~~~~~~ 409 (490)
|.+.|++.+|...|-.
T Consensus 100 ~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHTT-HHHHHHHHHT
T ss_pred HHhhccHHHHHHHHHh
Confidence 7777777776666544
No 384
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=70.94 E-value=23 Score=25.14 Aligned_cols=22 Identities=9% Similarity=-0.129 Sum_probs=12.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHh
Q 011236 431 LDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 431 ~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
.......|++++|...+++..+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3344555666666666665544
No 385
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.85 E-value=66 Score=27.45 Aligned_cols=18 Identities=6% Similarity=0.333 Sum_probs=11.6
Q ss_pred HhccCChHHHHHHHHHHH
Q 011236 217 YGARSELSSMENVLQEME 234 (490)
Q Consensus 217 ~~~~g~~~~a~~~~~~~~ 234 (490)
+.-.+.+++|.++|.+..
T Consensus 24 fgg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAA 41 (288)
T ss_pred cCCCcchHHHHHHHHHHH
Confidence 444557777777776654
No 386
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.69 E-value=25 Score=34.15 Aligned_cols=87 Identities=14% Similarity=0.002 Sum_probs=41.4
Q ss_pred cCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 011236 292 LGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAV 371 (490)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (490)
.|+...|...+.......+.-.......|.....+.|-...|..++.+..... ...+-++-.+.++|....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 34555555554444333332222333344444444555555555555544432 22333444555555555566666666
Q ss_pred HHHHHHcC
Q 011236 372 LKEIVKKG 379 (490)
Q Consensus 372 ~~~m~~~~ 379 (490)
|+...+..
T Consensus 699 ~~~a~~~~ 706 (886)
T KOG4507|consen 699 FRQALKLT 706 (886)
T ss_pred HHHHHhcC
Confidence 65555543
No 387
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.58 E-value=11 Score=19.70 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHHhcccc-hhhhHHHHH
Q 011236 438 RDVEEVEAFVSSLKIKVQK-RNMYHALTE 465 (490)
Q Consensus 438 g~~~~a~~~~~~~~~~~~~-~~~~~~l~~ 465 (490)
|+.+.|..+|+++....|. ...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 3455566666666555555 555554443
No 388
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=69.82 E-value=85 Score=29.55 Aligned_cols=64 Identities=16% Similarity=0.070 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhC-CC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 011236 208 FSYRICINSYGARSELSSMENVLQEMESQ-SH-----ISMDWGTYSTVANYYIIAGLKEKAIIYLKKCED 271 (490)
Q Consensus 208 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 271 (490)
.+...|++.++-.||+..|+++++.+.-. .+ ..-.+.+|-.+.-+|...+++.+|.+.|....-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788889999999999998877411 11 112345666688899999999999999988643
No 389
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.73 E-value=1e+02 Score=29.23 Aligned_cols=16 Identities=25% Similarity=0.152 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHcCCC
Q 011236 366 EKADAVLKEIVKKGKT 381 (490)
Q Consensus 366 ~~A~~~~~~m~~~~~~ 381 (490)
++..+-++.|....+.
T Consensus 297 ~~C~~ei~~mk~~~i~ 312 (413)
T PHA02875 297 EKCIIELRRIKSEKIG 312 (413)
T ss_pred HHHHHHHHHHHhhccC
Confidence 4556667777765444
No 390
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=69.02 E-value=9 Score=19.48 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=15.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 386 SWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
+|..+...+...++++.|...++..++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555555555666666665555544
No 391
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=66.97 E-value=1e+02 Score=28.13 Aligned_cols=116 Identities=12% Similarity=0.033 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh---cCCHHHHHHHH
Q 011236 296 DEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQ---KGMIEKADAVL 372 (490)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 372 (490)
+.-+.++++.+..++ .+......++..+.+..+.+...+-++++... .+-+...|...++.... .-.++....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~-~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK-NPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 445667777777654 55666777777777777777777888887775 22355666666665443 23455555555
Q ss_pred HHHHHc------CC----CCCHH-------HHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 011236 373 KEIVKK------GK----TPTPN-------SWSIIAAGYADKNNMEKAFECMKEALAV 413 (490)
Q Consensus 373 ~~m~~~------~~----~p~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 413 (490)
.+.+.. +. .+-.. .+..+...+.++|..+.|..+|+-.++.
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 544321 11 01111 2333334456789999999999998883
No 392
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.51 E-value=1.3e+02 Score=28.99 Aligned_cols=112 Identities=13% Similarity=-0.065 Sum_probs=76.9
Q ss_pred HHhcCCHHHHHHHHHHHH---HcCC--CCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHH-hhh-cCcCCCcch----
Q 011236 359 YSQKGMIEKADAVLKEIV---KKGK--TPT---PNSWSIIAAGYADKNNMEKAFECMKEALA-VHE-ENKFWRPKP---- 424 (490)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~---~~~~--~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~p~~---- 424 (490)
+.-.|++.+|.+++...- ..|. .|. ...||.|.-.+.+.|.+..+..+|.++++ ... -..|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 455799999998875542 1221 121 22357777777888999999999988874 110 113555543
Q ss_pred -------hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC
Q 011236 425 -------SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG 471 (490)
Q Consensus 425 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 471 (490)
.+|+ ..-.|...|+.-.|.+.|.+....... +..|-.|.++|.-..
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 1233 334677889999999999999988777 999999999997543
No 393
>PF13934 ELYS: Nuclear pore complex assembly
Probab=65.45 E-value=87 Score=26.79 Aligned_cols=77 Identities=12% Similarity=0.028 Sum_probs=34.2
Q ss_pred hhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHH
Q 011236 116 KVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVL 195 (490)
Q Consensus 116 ~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 195 (490)
..+++++|.+.+-.-.- ....-..++.++...|+.+.|..+++...-... +......++.. ..++.+.+|+.+-
T Consensus 90 D~~~~~~A~~~L~~ps~---~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~~v~EAf~~~ 163 (226)
T PF13934_consen 90 DHGDFEEALELLSHPSL---IPWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANGLVTEAFSFQ 163 (226)
T ss_pred ChHhHHHHHHHhCCCCC---CcccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 34556666666532210 111122355666666666666666654321110 11111222222 4456666666555
Q ss_pred HHH
Q 011236 196 LDM 198 (490)
Q Consensus 196 ~~m 198 (490)
+..
T Consensus 164 R~~ 166 (226)
T PF13934_consen 164 RSY 166 (226)
T ss_pred HhC
Confidence 444
No 394
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=64.41 E-value=1.1e+02 Score=27.58 Aligned_cols=63 Identities=10% Similarity=0.034 Sum_probs=39.2
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 011236 211 RICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIV 273 (490)
Q Consensus 211 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 273 (490)
..|..+..+.|+..+|.+.|+.+..+..+..-......|+.++....-+.++..++-+..+..
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 445555667888999998888875232221112334467778877777777766666654433
No 395
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=64.39 E-value=15 Score=23.73 Aligned_cols=24 Identities=8% Similarity=0.275 Sum_probs=14.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 011236 142 ALLNCYVREGLVDESLSLMQKMKE 165 (490)
Q Consensus 142 ~li~~~~~~g~~~~a~~~~~~m~~ 165 (490)
.+|.++.+.|++++|.+.++++..
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456666666666666666665543
No 396
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=63.64 E-value=1.2e+02 Score=27.71 Aligned_cols=124 Identities=14% Similarity=-0.010 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---cCCHHHHHHH
Q 011236 330 LEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD---KNNMEKAFEC 406 (490)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~ 406 (490)
.+.-..+++++++.+ +.+....-.++..+.+..+.++..+.++++....+. +...|...+..... .-.+.....+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 445677888888773 346667777888888888999999999999988654 77888888876554 3356777777
Q ss_pred HHHHHHhhhcC-cCC------Ccch-----hhHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 011236 407 MKEALAVHEEN-KFW------RPKP-----SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQ 455 (490)
Q Consensus 407 ~~~~~~~~~~~-~~~------~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 455 (490)
|.+.++..... .+. .|+. ..+..+...+..+|..+.|..+++.+.+.+.
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 77666532111 111 1111 1223333345679999999999998888653
No 397
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.55 E-value=44 Score=34.34 Aligned_cols=132 Identities=18% Similarity=0.122 Sum_probs=81.4
Q ss_pred HHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcH
Q 011236 112 DLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKI 191 (490)
Q Consensus 112 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 191 (490)
..+..+|+++.|++.-..+- +..+|..|.......|+.+-|+-.|++.+. |+.|--.|.-.|+.++.
T Consensus 651 ~LaLe~gnle~ale~akkld----d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD----DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC----cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 44557788888887766553 466789999988899998888888876654 34444456667777776
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 011236 192 PDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCED 271 (490)
Q Consensus 192 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 271 (490)
.++..-...+ -|..+. ... ..-.|+.++-.++++... ..| -.| ..-...|.-++|.++.++...
T Consensus 718 ~Km~~iae~r---~D~~~~--~qn-alYl~dv~ervkIl~n~g----~~~--lay----lta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 718 SKMMKIAEIR---NDATGQ--FQN-ALYLGDVKERVKILENGG----QLP--LAY----LTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHHhh---hhhHHH--HHH-HHHhccHHHHHHHHHhcC----ccc--HHH----HHHhhcCcHHHHHHHHHhhcc
Confidence 6665554332 232221 111 112477777777776553 211 112 123446778888888888766
Q ss_pred h
Q 011236 272 I 272 (490)
Q Consensus 272 ~ 272 (490)
.
T Consensus 782 ~ 782 (1202)
T KOG0292|consen 782 Q 782 (1202)
T ss_pred c
Confidence 3
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.50 E-value=38 Score=28.05 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 011236 239 ISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIV 273 (490)
Q Consensus 239 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 273 (490)
..|+..+|..++.++...|+.++|.+...++....
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33666666666666666666666666666655433
No 399
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=63.16 E-value=52 Score=25.75 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=41.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcC
Q 011236 56 VLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRG 119 (490)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (490)
+...+.+.|.+++..- ..+++.+...+..-.|.++++.+.+.+.+.+..|.-..++.+...|-
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 4555666676655443 44566666676667888888888887766666666666666666554
No 400
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.64 E-value=50 Score=23.04 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=17.0
Q ss_pred HcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChh
Q 011236 255 IAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKD 296 (490)
Q Consensus 255 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 296 (490)
..|+.+.|.++++.+. .++ ..|..++.++...|.-.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~-----~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QKE-----GWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCC-----cHHHHHHHHHHHcCchh
Confidence 3455555555555544 222 13445555555444433
No 401
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=62.36 E-value=11 Score=28.55 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=21.6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 011236 149 REGLVDESLSLMQKMKEMGSFGSALNYNGIMCLY 182 (490)
Q Consensus 149 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 182 (490)
..|.-..|-.+|.+|.+.|-+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34566677778888888877766 566666543
No 402
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.01 E-value=1e+02 Score=26.46 Aligned_cols=83 Identities=11% Similarity=-0.077 Sum_probs=39.1
Q ss_pred HHhcCChhHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchh-HHHHHHHHHhcCCHH
Q 011236 289 YASLGNKDEMMKFWGLQKIKCKKQLN-RDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRV-PNIILLGYSQKGMIE 366 (490)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~ 366 (490)
|....+++.|...|.+.+... |+. .-|..-+..+.+..+++.+.+--...++ +.||..- ...+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 334445556666554444333 333 2334444445555566655555444444 3333322 222333344455566
Q ss_pred HHHHHHHHH
Q 011236 367 KADAVLKEI 375 (490)
Q Consensus 367 ~A~~~~~~m 375 (490)
+|+..+.+.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 666665555
No 403
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=61.60 E-value=36 Score=21.10 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=10.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH
Q 011236 390 IAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 390 l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
+.-++.+.|++++|.+..+.+++
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33444455555555555555544
No 404
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.23 E-value=32 Score=20.76 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=21.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011236 79 LRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLD 112 (490)
Q Consensus 79 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 112 (490)
..+.|-.+++..+++.|.+.|+..++..+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666677777777777776666666665553
No 405
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.44 E-value=80 Score=24.68 Aligned_cols=81 Identities=12% Similarity=0.006 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHhhhcCcCCCcchh
Q 011236 352 PNIILLGYSQKGMIEKADAVLKEIVKKGK-----TPTPNSWSIIAAGYADKNN-MEKAFECMKEALAVHEENKFWRPKPS 425 (490)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-----~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~p~~~ 425 (490)
.|.++.-....+.+.-...+++.+.-... ..+..+|.+++.+.+...- ---+..+|.-+.+ .+.++++.
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-----~~~~~t~~ 116 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-----NDIEFTPS 116 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH-----cCCCCCHH
Confidence 34555555555555555555555432110 1245567777777765555 3344566666655 55677777
Q ss_pred hHHHHHHHHHcC
Q 011236 426 LVSSILDWLGDN 437 (490)
Q Consensus 426 ~~~~l~~~~~~~ 437 (490)
-|..++.++.+-
T Consensus 117 dy~~li~~~l~g 128 (145)
T PF13762_consen 117 DYSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHHcC
Confidence 777777776654
No 406
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=60.28 E-value=35 Score=20.56 Aligned_cols=31 Identities=10% Similarity=0.103 Sum_probs=14.6
Q ss_pred hcCCcCcHHHHHHHHHHCCCCCCHHHHHHHH
Q 011236 184 NTGQHEKIPDVLLDMKENGVPPDNFSYRICI 214 (490)
Q Consensus 184 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 214 (490)
+.|-.+++..++++|.+.|+.-+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3344444555555555555444444444443
No 407
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=60.21 E-value=2.3e+02 Score=29.90 Aligned_cols=84 Identities=8% Similarity=-0.036 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc---hhhhHHHHHHHHhcC-CcHH
Q 011236 400 MEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK---RNMYHALTEAHIRSG-QEVD 475 (490)
Q Consensus 400 ~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~l~~~~~~~g-~~a~ 475 (490)
.+.-.+.|.+.+. .--.-|..++..-...+...|++..|.+++.++.+.... ...|..++..+...| ..-.
T Consensus 1212 ld~~~e~y~el~k-----w~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~~ 1286 (1304)
T KOG1114|consen 1212 LDSYNENYQELLK-----WLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHLA 1286 (1304)
T ss_pred hhhHHHHHHHHHH-----HhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHhH
Confidence 4445566666655 112244566666666777789999999999988874333 777888999999999 7777
Q ss_pred HHHHHHHhCCCCC
Q 011236 476 GLLESMKADDIDE 488 (490)
Q Consensus 476 ~~~~~m~~~~~~p 488 (490)
.+++.++.-.+++
T Consensus 1287 t~~~~~~~v~~p~ 1299 (1304)
T KOG1114|consen 1287 TFVKNWMRVPFPY 1299 (1304)
T ss_pred HHHhhheeccCCc
Confidence 7777776544443
No 408
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.84 E-value=1.5e+02 Score=27.61 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=30.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHH
Q 011236 357 LGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYA-DKNNMEKAFECMKEA 410 (490)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 410 (490)
..+.+.|-+..|+++.+-+...++.-|+..-..+|+.|+ +.++++--+++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 345566666666666666666655545555555555544 445555555555543
No 409
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.36 E-value=1.9e+02 Score=28.55 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=47.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hhcCHHHHHHHHHHccccC-----CChhHHHHHHHHHHhc
Q 011236 77 RQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIG-KVRGLESAETYFNSLNDED-----KVDKLYGALLNCYVRE 150 (490)
Q Consensus 77 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~-----p~~~~~~~li~~~~~~ 150 (490)
..+.+.|.|..|++..+-+.+....-+|.....+|+.|+ +..++..-+++++...... ||-.--.+|...|.+.
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~ 429 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRK 429 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhc
Confidence 445677888888888888887775446777777777766 5667777777777664432 4432223444445444
Q ss_pred CC
Q 011236 151 GL 152 (490)
Q Consensus 151 g~ 152 (490)
..
T Consensus 430 ~~ 431 (665)
T KOG2422|consen 430 NE 431 (665)
T ss_pred CC
Confidence 43
No 410
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.28 E-value=38 Score=21.84 Aligned_cols=31 Identities=13% Similarity=0.009 Sum_probs=19.0
Q ss_pred cchhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 422 PKPSLVSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 422 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
-|..-.-.++.++...|++++|.++++.+.+
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444445666677777777777777666554
No 411
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.92 E-value=1.2e+02 Score=26.07 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=15.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC
Q 011236 322 GSLVKIGELEEAEKMLEEWELSCYC 346 (490)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~ 346 (490)
..-...+++.+|..+|+++......
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334566777777777777665443
No 412
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=58.81 E-value=31 Score=32.64 Aligned_cols=22 Identities=9% Similarity=-0.135 Sum_probs=10.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 011236 357 LGYSQKGMIEKADAVLKEIVKK 378 (490)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~ 378 (490)
.++.+.+++..|+.=+.++++.
T Consensus 46 ~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 46 LAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhheeechhhhHHHHHHhhhhc
Confidence 3444444444444444444443
No 413
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.50 E-value=1.6e+02 Score=27.55 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhhccC-CChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011236 246 YSTVANYYIIAGLKEKAIIYLKKCEDIVSKS-KDALGYNHLISHYASLGNKDEMMKFWGLQK 306 (490)
Q Consensus 246 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 306 (490)
+.-+.+.|..+|+++.|++.|.+.++-.... .-+..|..+|..-.-.|+|.....+..+..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 3345555555555555555555543322110 112234444444445555555555544443
No 414
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=58.44 E-value=1.1e+02 Score=25.82 Aligned_cols=69 Identities=17% Similarity=0.055 Sum_probs=37.4
Q ss_pred HHHHHHHHHhccCCH-------HHHHHHHHHHHHhhhcCcCC-Ccch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 386 SWSIIAAGYADKNNM-------EKAFECMKEALAVHEENKFW-RPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 386 ~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~-~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
.+-.+...|-..|+. ..|.+.|.++.+.. ..+. .-+. .....+.....+.|+.++|.+.|.++......
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e--~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE--DFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC--cCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 344455555556653 34455555554411 1111 1122 33334555667888888888888888766543
No 415
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=57.55 E-value=1.3e+02 Score=26.35 Aligned_cols=28 Identities=14% Similarity=-0.206 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011236 241 MDWGTYSTVANYYIIAGLKEKAIIYLKK 268 (490)
Q Consensus 241 ~~~~~~~~li~~~~~~~~~~~a~~~~~~ 268 (490)
-++.....+...|.+.|++.+|+..|-.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 5567777788888888888888877654
No 416
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=57.29 E-value=42 Score=20.83 Aligned_cols=28 Identities=7% Similarity=-0.104 Sum_probs=20.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 429 SILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 429 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
.+.-++.+.|+++.|.+..+.+.+..|.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3445677888888888888888888777
No 417
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=56.90 E-value=11 Score=28.55 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=20.4
Q ss_pred HHHhcC--CcHHHHHHHHHhCCCCCCC
Q 011236 466 AHIRSG--QEVDGLLESMKADDIDEDK 490 (490)
Q Consensus 466 ~~~~~g--~~a~~~~~~m~~~~~~pd~ 490 (490)
.....| .+|-.+|.+|.++|-+||+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc
Confidence 344455 7799999999999999986
No 418
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=56.58 E-value=95 Score=24.32 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=28.3
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 011236 160 MQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARS 221 (490)
Q Consensus 160 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 221 (490)
.+.+.+.|.+++. --..++..+...++.-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 9 ~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344445544332 223344455555555666666666655554444443333334443333
No 419
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.07 E-value=75 Score=22.95 Aligned_cols=53 Identities=8% Similarity=0.017 Sum_probs=25.8
Q ss_pred HHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 393 GYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
.+...|++++|..+.+.. ..||...|..|.. .+.|-.+.+..-+.++...+.+
T Consensus 48 SLmNrG~Yq~Al~l~~~~---------~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg~p 100 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL---------CYPDLEPWLALCE--WRLGLGSALESRLNRLAASGDP 100 (115)
T ss_pred HHHccchHHHHHHhcCCC---------CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCCCH
Confidence 345556666665555443 2355555544432 3455555555444444444433
No 420
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=55.99 E-value=89 Score=24.09 Aligned_cols=71 Identities=7% Similarity=-0.027 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHh-CCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCC
Q 011236 66 KISELELQRVIRQLRSRKR---FKHALQVSEWMSG-QGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKV 136 (490)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 136 (490)
.++..+--.+..++.+..+ .++.+.+++.+.+ ....-..+....+.-.+.+.++++.++++.+.+.+..||
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
No 421
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=55.54 E-value=1.2e+02 Score=25.07 Aligned_cols=56 Identities=21% Similarity=0.183 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------------CCchhHHHHHHHHHhcCCHHHHHHHHH
Q 011236 318 ITMLGSLVKIGELEEAEKMLEEWELSCYC--------------YDFRVPNIILLGYSQKGMIEKADAVLK 373 (490)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 373 (490)
.+++..|-+..++.++.++++.|.+..+. +--...|.-...+.+.|.+|.|+.+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 34566666777777777777777654221 112234555555666666666666665
No 422
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.52 E-value=72 Score=22.60 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=15.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhh
Q 011236 249 VANYYIIAGLKEKAIIYLKKCEDI 272 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~~~~~ 272 (490)
+.......|++++|...+++..+.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444556667777777777766543
No 423
>PRK09857 putative transposase; Provisional
Probab=55.48 E-value=77 Score=28.43 Aligned_cols=62 Identities=10% Similarity=0.235 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHHHhCCCCC
Q 011236 427 VSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESMKADDIDE 488 (490)
Q Consensus 427 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m~~~~~~p 488 (490)
+..++......|+.++..++++.+.+..+. ....-++.+-+...| +++.++..+|...|+.+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 445555555667777777777777666555 444456777777777 66788888888888764
No 424
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=54.43 E-value=1.8e+02 Score=27.00 Aligned_cols=88 Identities=10% Similarity=-0.135 Sum_probs=50.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHH------------HHHHHhcCChhHHHHHHHHHHHhcC-CCCh
Q 011236 248 TVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHL------------ISHYASLGNKDEMMKFWGLQKIKCK-KQLN 314 (490)
Q Consensus 248 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 314 (490)
.|...+-..|++++|..++.+ ..+.||.++ ++.|...+|+-.|.-+-++...... .|+.
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~e--------l~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~ 207 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCE--------LQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDV 207 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHh--------cchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccH
Confidence 355566667777777777666 233344332 3445556666666665555544433 3333
Q ss_pred h-----hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011236 315 R-----DYITMLGSLVKIGELEEAEKMLEEWELS 343 (490)
Q Consensus 315 ~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 343 (490)
. -|..+++.....+.+=.+.+.++.+-..
T Consensus 208 ~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 208 QELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDT 241 (439)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhcc
Confidence 2 3566666666666666666666666543
No 425
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=53.50 E-value=35 Score=32.30 Aligned_cols=105 Identities=6% Similarity=-0.080 Sum_probs=73.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHH
Q 011236 357 LGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLG 435 (490)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 435 (490)
.-+...+.++.|..++.++++.... .+..|..-..++.+.+++..|+.=+.++++ ..|.. ..|..=..++.
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie-------~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIE-------LDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhh-------cCchhhheeeeccHHHH
Confidence 4456678899999999999987432 333444445788999999999998888888 33543 33444445667
Q ss_pred cCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHh
Q 011236 436 DNRDVEEVEAFVSSLKIKVQKRNMYHALTEAHIR 469 (490)
Q Consensus 436 ~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 469 (490)
+.+.+.+|...|+......|...-....+.-|-+
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 7788889999999888887774334444444433
No 426
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=52.71 E-value=2.1e+02 Score=27.08 Aligned_cols=168 Identities=13% Similarity=0.163 Sum_probs=77.9
Q ss_pred HHHHHHHHHHccccC----CChhHHHHHHHHHHhcCChhH-----HHHHHHHHHhcCCCCCcchHHHHH---HHHHhcCC
Q 011236 120 LESAETYFNSLNDED----KVDKLYGALLNCYVREGLVDE-----SLSLMQKMKEMGSFGSALNYNGIM---CLYTNTGQ 187 (490)
Q Consensus 120 ~~~A~~~~~~~~~~~----p~~~~~~~li~~~~~~g~~~~-----a~~~~~~m~~~~~~p~~~~~~~l~---~~~~~~~~ 187 (490)
.++.+++.+.+.... |-..-..++|..||+.++.+- =+.+++.+...++ |-..+||..- .-|.-.+-
T Consensus 71 r~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~pl~~L~l-prsd~fN~F~ai~~kYIPkdc 149 (669)
T KOG3636|consen 71 RNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWITLLEPLLLLNL-PRSDEFNVFFAITTKYIPKDC 149 (669)
T ss_pred HHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHHHHHHHHHhcC-CcchhhhhhHhhhhcccCCCC
Confidence 345566666665433 212235667778888776542 2344444444433 2444554332 22221111
Q ss_pred c--CcHHHHHHHHHH------------CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHH---
Q 011236 188 H--EKIPDVLLDMKE------------NGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVA--- 250 (490)
Q Consensus 188 ~--~~a~~~~~~m~~------------~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li--- 250 (490)
. ...+.+|+-+++ ..+.||.++.|-+...++.....+-...+++--. +.+- |-...+-++|
T Consensus 150 rpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~-qqaD-PF~vffLaliiLi 227 (669)
T KOG3636|consen 150 RPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYI-QQAD-PFLVFFLALIILI 227 (669)
T ss_pred CCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHH-hcCC-ceehHHHHHHHhc
Confidence 1 112223332221 2356666666666665555555555555555554 2222 2222222221
Q ss_pred HH-----HHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHh
Q 011236 251 NY-----YIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYAS 291 (490)
Q Consensus 251 ~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (490)
++ -.+...-++++++++.|...... .|+.-+-.|...|+.
T Consensus 228 Nake~ILq~~sdsKEe~ikfLenmp~~L~~-eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 228 NAKEEILQVKSDSKEEAIKFLENMPAQLSV-EDVPDFFSLAQYYSD 272 (669)
T ss_pred ccHHHHhhhccccHHHHHHHHHcCchhccc-ccchhHHHHHHHHhh
Confidence 11 12334455666666666554444 555555566555543
No 427
>PRK11619 lytic murein transglycosylase; Provisional
Probab=52.67 E-value=2.7e+02 Score=28.44 Aligned_cols=362 Identities=8% Similarity=-0.008 Sum_probs=168.1
Q ss_pred hhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 011236 104 VHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYT 183 (490)
Q Consensus 104 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 183 (490)
...-...+..+++.+++.....++..- ..+...--....+....|+.++|......+-..|.. .+...+.++..+.
T Consensus 99 ~~Lr~~~l~~La~~~~w~~~~~~~~~~---p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~ 174 (644)
T PRK11619 99 RSLQSRFVNELARREDWRGLLAFSPEK---PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQ 174 (644)
T ss_pred HHHHHHHHHHHHHccCHHHHHHhcCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHH
Confidence 333344455566667777666633221 124444445566677778877777777776666544 5666777777777
Q ss_pred hcCCcCcHH--HHHHHHHHCCCCCCHHHHHHHHHHHhc------------cCChHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 011236 184 NTGQHEKIP--DVLLDMKENGVPPDNFSYRICINSYGA------------RSELSSMENVLQEMESQSHISMDWGTYSTV 249 (490)
Q Consensus 184 ~~~~~~~a~--~~~~~m~~~~~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 249 (490)
+.|...... +=+......| +...-..+...... ..+...+...+.. +.++...-..+
T Consensus 175 ~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~------~~~~~~~~~~~ 245 (644)
T PRK11619 175 QSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART------TGPTDFTRQMA 245 (644)
T ss_pred HcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc------cCCChhhHHHH
Confidence 666544322 1122222222 11111111111100 0111111111111 11222111111
Q ss_pred HHHH--HHcCCHHHHHHHHHHHhhhhccCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 011236 250 ANYY--IIAGLKEKAIIYLKKCEDIVSKSK--DALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLV 325 (490)
Q Consensus 250 i~~~--~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 325 (490)
+.++ ....+.+.|...+..........+ ....+..+.......+...++...++..... ..+......-+....
T Consensus 246 ~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al 323 (644)
T PRK11619 246 AVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMAL 323 (644)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHH
Confidence 1111 233455677777766533322100 1122333333333332234444444422211 123333444444445
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHc------------CCC--------CCHH
Q 011236 326 KIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKK------------GKT--------PTPN 385 (490)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------------~~~--------p~~~ 385 (490)
+.++++.+...+..|... ..-...-.--+.+++...|+.++|...|+.+... |.+ |...
T Consensus 324 ~~~dw~~~~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~ 402 (644)
T PRK11619 324 GTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPD 402 (644)
T ss_pred HccCHHHHHHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchh
Confidence 666776666666665432 1112233334555555667777777766665321 111 0000
Q ss_pred ------HHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhccc---c
Q 011236 386 ------SWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQ---K 456 (490)
Q Consensus 386 ------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~ 456 (490)
.-..-+..+...|....|...|..+.. . .+......+.....+.|.++.+............ .
T Consensus 403 ~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~------~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~r 474 (644)
T PRK11619 403 SALTQGPEMARVRELMYWNMDNTARSEWANLVA------S--RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEER 474 (644)
T ss_pred hhhccChHHHHHHHHHHCCCHHHHHHHHHHHHh------c--CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHh
Confidence 011223445667888888888887776 2 3344555666666778888888776654332111 1
Q ss_pred -hhhhHHHHHHHHhc-C-CcHHHHHHHHHhCCCCCC
Q 011236 457 -RNMYHALTEAHIRS-G-QEVDGLLESMKADDIDED 489 (490)
Q Consensus 457 -~~~~~~l~~~~~~~-g-~~a~~~~~~m~~~~~~pd 489 (490)
+..|...+..+.+. | +.++-+---..+.++.|+
T Consensus 475 fp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 475 FPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred CCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 44466666655433 3 555543334445566554
No 428
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.12 E-value=21 Score=32.16 Aligned_cols=83 Identities=11% Similarity=-0.105 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHH
Q 011236 327 IGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTP-NSWSIIAAGYADKNNMEKAFE 405 (490)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~ 405 (490)
.|.++.|.+.+...+.. -++....|..-..++.+.++...|++-+....+.+ ||. ..|-.-..+-.-.|++++|..
T Consensus 127 ~G~~~~ai~~~t~ai~l-np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIEL-NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred Ccchhhhhccccccccc-CCchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHHH
Confidence 34455555555444443 12233333333344444555555555444444432 222 122222223333455555555
Q ss_pred HHHHHHH
Q 011236 406 CMKEALA 412 (490)
Q Consensus 406 ~~~~~~~ 412 (490)
.|+.+.+
T Consensus 204 dl~~a~k 210 (377)
T KOG1308|consen 204 DLALACK 210 (377)
T ss_pred HHHHHHh
Confidence 5555544
No 429
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.16 E-value=97 Score=22.79 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=16.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 387 WSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
|..|+..|...|..++|+++|.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66666666666666666666666544
No 430
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.89 E-value=1.1e+02 Score=23.28 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=27.2
Q ss_pred HHHHHHHHccccC---CChhHHHHHHHHHHhcCChhHHHHHHHH
Q 011236 122 SAETYFNSLNDED---KVDKLYGALLNCYVREGLVDESLSLMQK 162 (490)
Q Consensus 122 ~A~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~ 162 (490)
.+.++|..|...+ .-+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6677777666654 2355677777777777777777777764
No 431
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=50.43 E-value=1.3e+02 Score=30.05 Aligned_cols=76 Identities=13% Similarity=0.031 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHH------HHHHHHHHHHhcCCCCCchhHHH
Q 011236 283 NHLISHYASLGNKDEMMKFWGLQKIKCK--KQLNRDYITMLGSLVKIGELE------EAEKMLEEWELSCYCYDFRVPNI 354 (490)
Q Consensus 283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~ 354 (490)
.+|+.+|...|++..+.++++....... ..-...|+..++...+.|.++ .+.+.+++.. +.-|..||..
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 3788888888988888888887665433 333456778888888888654 2333333332 4556777777
Q ss_pred HHHHHHh
Q 011236 355 ILLGYSQ 361 (490)
Q Consensus 355 l~~~~~~ 361 (490)
++++-..
T Consensus 109 l~~~sln 115 (1117)
T COG5108 109 LCQASLN 115 (1117)
T ss_pred HHHhhcC
Confidence 7666544
No 432
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.28 E-value=2.8e+02 Score=28.43 Aligned_cols=24 Identities=4% Similarity=-0.273 Sum_probs=19.3
Q ss_pred HHHcCCCHHHHHHHHHHHHhcccc
Q 011236 433 WLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 433 ~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
+-.-+.++.+|.+.-+.|-+..|+
T Consensus 375 asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 375 ASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred hhhhccCHHHHHHHHHHHhccCCc
Confidence 334467899999999999998887
No 433
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=50.22 E-value=37 Score=22.21 Aligned_cols=51 Identities=12% Similarity=0.099 Sum_probs=33.0
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 011236 346 CYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADK 397 (490)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 397 (490)
.|....++.++..+++..-.+.++..+.++.+.|.- +..+|.--++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 455566777777777777777777777777777654 566666656555543
No 434
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=50.04 E-value=1.7e+02 Score=25.28 Aligned_cols=184 Identities=15% Similarity=0.109 Sum_probs=87.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Q 011236 248 TVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYAS-LGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVK 326 (490)
Q Consensus 248 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 326 (490)
.++..+-..|+++++...++++...++. .+..-.+.+-.+|-. -|....+++++.........-.......++.-|.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~e-Lt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ 84 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPE-LTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKK 84 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCC-CCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHH
Confidence 3677788888888888888888877665 666666777666633 34445555555544443321111233333333321
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHhccCCHHHHH
Q 011236 327 IGELEEAEKMLEEWELSCYCYDFRVPNIILLG-YSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAA-GYADKNNMEKAF 404 (490)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~ 404 (490)
.=. ++-..+..++. .+|+. +.....-.++.-.|.+|+. |..-|-+=+. +-.+..-.+.|.
T Consensus 85 kie-~EL~~~C~eii------------~lId~~Lip~~~~~eskvfy~Kmkg-----DyyRYlaE~~~~~~~~~~~~~a~ 146 (236)
T PF00244_consen 85 KIE-DELIDICNEII------------RLIDKSLIPSATSPESKVFYYKMKG-----DYYRYLAEFDSGDEKKEAAEKAL 146 (236)
T ss_dssp HHH-HHHHHHHHHHH------------HHHHHTCHHHS-SHHHHHHHHHHHH-----HHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHH------------HHHHHHHhccccchhHHHHHHHHhc-----cccccccccccchhhHHHHHHHH
Confidence 100 00000111110 11111 1111123344555555553 2211111110 111112246777
Q ss_pred HHHHHHHHhhhcCcCCCcchhhHHHHHH-----HHHcCCCHHHHHHHHHHHHh
Q 011236 405 ECMKEALAVHEENKFWRPKPSLVSSILD-----WLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 405 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~ 452 (490)
+.|+++.+... ..+.|...++..++- .|...|+.++|.++.+...+
T Consensus 147 ~aY~~A~~~a~--~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 147 EAYEEALEIAK--KELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHH--HHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HhhhhHHHHHh--cccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 88888776442 226677766554443 33468999999888776544
No 435
>PRK14136 recX recombination regulator RecX; Provisional
Probab=49.76 E-value=1.9e+02 Score=25.90 Aligned_cols=11 Identities=9% Similarity=0.078 Sum_probs=4.6
Q ss_pred HHHHHHHHhcC
Q 011236 176 NGIMCLYTNTG 186 (490)
Q Consensus 176 ~~l~~~~~~~~ 186 (490)
..++..+...|
T Consensus 279 ~K~iRfL~rRG 289 (309)
T PRK14136 279 AKQARFLAARG 289 (309)
T ss_pred HHHHHHHHHCC
Confidence 33344444444
No 436
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.28 E-value=29 Score=30.73 Aligned_cols=35 Identities=23% Similarity=0.437 Sum_probs=27.3
Q ss_pred CChh-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 011236 135 KVDK-LYGALLNCYVREGLVDESLSLMQKMKEMGSF 169 (490)
Q Consensus 135 p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 169 (490)
|+.. -|+.-|....+.||+++|+.++++..+.|+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4433 3678888888888888888888888888765
No 437
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=49.10 E-value=1.2e+02 Score=24.49 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=28.2
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcC
Q 011236 62 LEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRG 119 (490)
Q Consensus 62 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (490)
..|.+++..-. .++..+....+.-.|.++++.+.+.+...+..+.-..+..+...|-
T Consensus 19 ~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 19 QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 33444433332 3444444444455566666666665554455555555555555443
No 438
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.01 E-value=1.9e+02 Score=25.61 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=34.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHH-------HHHHHHHhcCCcCcHHHHH
Q 011236 143 LLNCYVREGLVDESLSLMQKMKEMGSFGSALNYN-------GIMCLYTNTGQHEKIPDVL 195 (490)
Q Consensus 143 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-------~l~~~~~~~~~~~~a~~~~ 195 (490)
+.+-.++.+++++|+..+.++...|+..|..+.| .+...|...|+....-+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 4555667788888888888888887776665543 3445555566555544443
No 439
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.04 E-value=14 Score=33.10 Aligned_cols=92 Identities=14% Similarity=0.038 Sum_probs=64.1
Q ss_pred hhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHH
Q 011236 116 KVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDV 194 (490)
Q Consensus 116 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 194 (490)
..|.++.|++.|.......| ....|..-.+++.+.+.+..|++=++...+.+.. +...|-.--.+....|+|+++...
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHH
Confidence 55778888888888877775 4566666777888888888888887777766432 233344444455566888888888
Q ss_pred HHHHHHCCCCCCHH
Q 011236 195 LLDMKENGVPPDNF 208 (490)
Q Consensus 195 ~~~m~~~~~~p~~~ 208 (490)
+....+.++.+...
T Consensus 205 l~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 205 LALACKLDYDEANS 218 (377)
T ss_pred HHHHHhccccHHHH
Confidence 88888776654443
No 440
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=48.03 E-value=46 Score=33.26 Aligned_cols=33 Identities=9% Similarity=-0.003 Sum_probs=0.0
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 011236 219 ARSELSSMENVLQEMESQSHISMDWGTYSTVANY 252 (490)
Q Consensus 219 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 252 (490)
+.|++.+|.+.+-.+. .....|...-...|.++
T Consensus 507 ~~~~~~~Aa~~Lv~Ll-~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 507 DEGDFREAASLLVSLL-KSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ----------------------------------
T ss_pred hhhhHHHHHHHHHHHH-CCCCCcHHHHHHHHHHH
Confidence 3477777777766666 55555655544444443
No 441
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=47.39 E-value=1.6e+02 Score=24.32 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=15.7
Q ss_pred HcCCCHHHHHHHHHHHHhcc
Q 011236 435 GDNRDVEEVEAFVSSLKIKV 454 (490)
Q Consensus 435 ~~~g~~~~a~~~~~~~~~~~ 454 (490)
.+.|+++.|+++++-|.+..
T Consensus 132 l~~~~~~~Ae~~~~~ME~lY 151 (204)
T COG2178 132 LRKGSFEEAERFLKFMEKLY 151 (204)
T ss_pred HHhccHHHHHHHHHHHHHHH
Confidence 45789999999888887654
No 442
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.93 E-value=3.4e+02 Score=27.90 Aligned_cols=122 Identities=11% Similarity=-0.017 Sum_probs=63.0
Q ss_pred HHHHHHHHhCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc-----CCCh-hhHHHHHHHHHhcCChhHH
Q 011236 227 ENVLQEMESQSHI--SMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSK-----SKDA-LGYNHLISHYASLGNKDEM 298 (490)
Q Consensus 227 ~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~-~~~~~l~~~~~~~~~~~~a 298 (490)
..++.+|..+.+- .....+...++-.|....+++..+++.+.++..... .++. ..|...+.---+.|+-++|
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 3455666522221 123445555666777777788888877777653211 0111 1233333333345677777
Q ss_pred HHHHHHHHHhcCCCChhhHHHHH---------HHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 011236 299 MKFWGLQKIKCKKQLNRDYITML---------GSLVKIGELEEAEKMLEEWELSCYCYDFR 350 (490)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 350 (490)
+...-.+.+......+..|.... ..|...+..+.|...|++.-+ +.|+..
T Consensus 263 L~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~ 321 (1226)
T KOG4279|consen 263 LNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEY 321 (1226)
T ss_pred HHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhh
Confidence 77666566554422222222222 223345567778888887766 345443
No 443
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.78 E-value=45 Score=29.63 Aligned_cols=29 Identities=31% Similarity=0.345 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011236 353 NIILLGYSQKGMIEKADAVLKEIVKKGKT 381 (490)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 381 (490)
+.-|..-.+.|++++|++++++..+.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34444455555555555555555554443
No 444
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.70 E-value=2.5e+02 Score=26.36 Aligned_cols=55 Identities=9% Similarity=-0.072 Sum_probs=35.8
Q ss_pred HHHhcCChhHHHHHHHHHHHhcCCCChh--hHHHHHHHHHh--cCCHHHHHHHHHHHHhc
Q 011236 288 HYASLGNKDEMMKFWGLQKIKCKKQLNR--DYITMLGSLVK--IGELEEAEKMLEEWELS 343 (490)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 343 (490)
.+.+.+++..|.++++.+... ..++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445788888888888887776 323332 34455555543 55677888888877654
No 445
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=46.14 E-value=85 Score=23.11 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=27.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011236 74 RVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLI 114 (490)
Q Consensus 74 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (490)
++++.+.+....++|+++++.|.+.| ..++.....|-..+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34556666777888999999988888 46665555544333
No 446
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=46.09 E-value=35 Score=22.10 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=21.8
Q ss_pred hhHHHHHHHHhcC-CcHHHHHHHHHhCCC
Q 011236 459 MYHALTEAHIRSG-QEVDGLLESMKADDI 486 (490)
Q Consensus 459 ~~~~l~~~~~~~g-~~a~~~~~~m~~~~~ 486 (490)
+=.++++--.+.| ..|..++++|.+.|+
T Consensus 20 ~S~S~lQR~~~IGynrAariid~lE~~Gi 48 (63)
T smart00843 20 ASTSLLQRRLRIGYNRAARLIDQLEEEGI 48 (63)
T ss_pred CChHHHHHHHhcchhHHHHHHHHHHHCcC
Confidence 3456677777888 889999999988875
No 447
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.92 E-value=2.3e+02 Score=26.86 Aligned_cols=58 Identities=12% Similarity=0.057 Sum_probs=25.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcC-------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011236 284 HLISHYASLGNKDEMMKFWGLQKIKCK-------KQLNRDYITMLGSLVKIGELEEAEKMLEEWE 341 (490)
Q Consensus 284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (490)
.|++.++-.||+..|+++++.+.-... .-...++-.+.-+|.-.+++.+|.++|..+.
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555442211110 1112234444444555555555555555443
No 448
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=45.59 E-value=1.1e+02 Score=22.38 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 011236 353 NIILLGYSQKGMIEKADAVLKEI 375 (490)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~m 375 (490)
..++..|...|+.++|...+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34555666667777776666554
No 449
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.44 E-value=72 Score=27.74 Aligned_cols=57 Identities=11% Similarity=0.017 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCcCcHHHHHHHHHH----CC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 011236 177 GIMCLYTNTGQHEKIPDVLLDMKE----NG-VPPDNFSYRICINSYGARSELSSMENVLQEM 233 (490)
Q Consensus 177 ~l~~~~~~~~~~~~a~~~~~~m~~----~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 233 (490)
.+..-|...|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344556666777777776666632 23 2334455666667777777777666654444
No 450
>PRK09857 putative transposase; Provisional
Probab=45.06 E-value=2.1e+02 Score=25.69 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011236 317 YITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPT 383 (490)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 383 (490)
+..++......++.++..++++.+.+. .+.......++..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344555555566666666666666554 333333444555666666666677777777777776543
No 451
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.00 E-value=2e+02 Score=24.78 Aligned_cols=18 Identities=11% Similarity=-0.309 Sum_probs=8.0
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 011236 248 TVANYYIIAGLKEKAIIY 265 (490)
Q Consensus 248 ~li~~~~~~~~~~~a~~~ 265 (490)
.-+.++.+..+++.+..-
T Consensus 49 nralchlk~~~~~~v~~d 66 (284)
T KOG4642|consen 49 NRALCHLKLKHWEPVEED 66 (284)
T ss_pred hHHHHHHHhhhhhhhhhh
Confidence 344444444444444433
No 452
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=44.69 E-value=2e+02 Score=24.65 Aligned_cols=29 Identities=7% Similarity=0.003 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcC
Q 011236 282 YNHLISHYASLGNKDEMMKFWGLQKIKCK 310 (490)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 310 (490)
+..++-.+...|+++.|+++.+..+..+.
T Consensus 86 l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 86 LMTVMVWRFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeEeeeeeeeccCHHHHHHHHHHHHHcCC
Confidence 33444456677888888888877776665
No 453
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.13 E-value=2.4e+02 Score=25.36 Aligned_cols=43 Identities=7% Similarity=0.015 Sum_probs=25.2
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 011236 228 NVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCED 271 (490)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 271 (490)
++++.+. ..++.|.-.++.-+.-.+.+.=.+.+.+.+++.+..
T Consensus 264 EL~~~L~-~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLE-EKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHH-hcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555555 556666655555555555555566666666666544
No 454
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=43.64 E-value=2.1e+02 Score=24.44 Aligned_cols=101 Identities=14% Similarity=0.078 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC---CHHHH--HHHHHHHHHcCCHHHHHHHHHHHhhhhccCC
Q 011236 203 VPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISM---DWGTY--STVANYYIIAGLKEKAIIYLKKCEDIVSKSK 277 (490)
Q Consensus 203 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 277 (490)
+.++..-+|.|+--|.-...+.+|.+.|..-. ++.+ +..++ ..-|......|++++|++...++...... .
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd-~ 97 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILD-T 97 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHc-c
Confidence 44555556666655555555555555554432 3333 33333 34677789999999999999887665554 4
Q ss_pred ChhhHHHHHHH----HHhcCChhHHHHHHHHHHH
Q 011236 278 DALGYNHLISH----YASLGNKDEMMKFWGLQKI 307 (490)
Q Consensus 278 ~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~ 307 (490)
|...+-.+... ..+.|..++|+++.+.-..
T Consensus 98 n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 98 NRELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 54333333222 3567778888888774443
No 455
>PRK09462 fur ferric uptake regulator; Provisional
Probab=43.53 E-value=1.6e+02 Score=23.16 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=32.7
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCH
Q 011236 59 QWVLEGQKISELELQRVIRQLRSR-KRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGL 120 (490)
Q Consensus 59 ~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (490)
.+...|.+++..- ..++..+... +..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444455543332 3334444433 34566777777776666555566655566666555543
No 456
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=43.50 E-value=4.6e+02 Score=28.37 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH-HhCCC--CCChhhHHHHHHHHHh-hcCHHHHHHHHHHccc
Q 011236 73 QRVIRQLRSRKRFKHALQVSEWM-SGQGL--AFSVHDHAVQLDLIGK-VRGLESAETYFNSLND 132 (490)
Q Consensus 73 ~~ll~~~~~~~~~~~a~~~~~~~-~~~~~--~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~ 132 (490)
-..++.+...++|.+|..+.++- +..++ ..++..|..-+..+.+ .++.+.---++..+.+
T Consensus 698 L~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~ 761 (928)
T PF04762_consen 698 LAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRN 761 (928)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccc
Confidence 34445566788898887776542 22233 4566666555555443 2333333333334433
No 457
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=42.84 E-value=1.2e+02 Score=22.94 Aligned_cols=21 Identities=5% Similarity=0.058 Sum_probs=8.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHH
Q 011236 428 SSILDWLGDNRDVEEVEAFVS 448 (490)
Q Consensus 428 ~~l~~~~~~~g~~~~a~~~~~ 448 (490)
..+++...+.|-.+.....++
T Consensus 63 r~~~r~A~~~glI~d~e~Wl~ 83 (124)
T PF08780_consen 63 RDVFREAFKAGLIDDGEIWLD 83 (124)
T ss_dssp HHHHHHHHHTTSSSHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHH
Confidence 334444444444443333333
No 458
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=42.72 E-value=1.2e+02 Score=21.24 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHcccc
Q 011236 90 QVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDE 133 (490)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 133 (490)
++|+-....|+..++..|..++..+...=-++...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 67777777777777777777777766666666666666666543
No 459
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=42.56 E-value=3.7e+02 Score=27.04 Aligned_cols=62 Identities=8% Similarity=-0.016 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCC
Q 011236 137 DKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGV 203 (490)
Q Consensus 137 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 203 (490)
...+..|++.+. .=+.+.-.++++++.. . + ...+..++++....|..+...-+.+.+....+
T Consensus 310 ~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 310 AAKFLRLVRLLR-TLSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 334555555433 2344555555555543 1 1 34566666666666665555544444444333
No 460
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=42.39 E-value=97 Score=20.27 Aligned_cols=50 Identities=4% Similarity=0.066 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011236 66 KISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGK 116 (490)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 116 (490)
.|....++.+++..++..-.+.++..+.+..+.|. .+...|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34556667777777777777777777777777773 566666666665554
No 461
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.91 E-value=1.4e+02 Score=21.56 Aligned_cols=55 Identities=15% Similarity=-0.059 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHH
Q 011236 86 KHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLY 140 (490)
Q Consensus 86 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 140 (490)
....+-++++...+....|-....+--.|.+.|+.+.|.+-|+.=...-|...+|
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 3344556666666666667777777778888888888888888766666655444
No 462
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=40.38 E-value=2.1e+02 Score=23.67 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=37.0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011236 212 ICINSYGARSELSSMENVLQEMESQSHI--------------SMDWGTYSTVANYYIIAGLKEKAIIYLKK 268 (490)
Q Consensus 212 ~li~~~~~~g~~~~a~~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 268 (490)
+++..|-+..++.++.++++.|. +..+ .+.-...|.....+.++|.+|.|+.++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~-el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLH-ELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 45666777778888888777775 2221 23344556667777788888888777774
No 463
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.10 E-value=4.4e+02 Score=27.24 Aligned_cols=151 Identities=8% Similarity=0.068 Sum_probs=80.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChh
Q 011236 76 IRQLRSRKRFKHALQVSEWMSGQGLA-FSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVD 154 (490)
Q Consensus 76 l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 154 (490)
++.+.+.+.+++|+++.+.....-.. .........+..+...|++++|-...-.|... +..-|...+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn--~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN--NAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc--hHHHHHHHHHHhccccccc
Confidence 45566777788888776654333211 13345555677777778888777776666542 4455666666666655544
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHH------------------HHHHCCCCCCHHHHHHHHHH
Q 011236 155 ESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLL------------------DMKENGVPPDNFSYRICINS 216 (490)
Q Consensus 155 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~------------------~m~~~~~~p~~~~~~~li~~ 216 (490)
....+ ++......+...|..++..+.. .+...-.++.. +..+ .- -+...-..|+..
T Consensus 441 ~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q-~S-e~~~L~e~La~L 514 (846)
T KOG2066|consen 441 DIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQ-NS-ESTALLEVLAHL 514 (846)
T ss_pred hhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHh-hc-cchhHHHHHHHH
Confidence 32222 2222222344556666655554 11111111100 0000 01 112223347788
Q ss_pred HhccCChHHHHHHHHHHH
Q 011236 217 YGARSELSSMENVLQEME 234 (490)
Q Consensus 217 ~~~~g~~~~a~~~~~~~~ 234 (490)
|...+++..|.+++-..+
T Consensus 515 Yl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHccChHHHHHHHHhcc
Confidence 888899999988887775
No 464
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=39.36 E-value=2.4e+02 Score=24.03 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=11.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 011236 285 LISHYASLGNKDEMMKFWGLQK 306 (490)
Q Consensus 285 l~~~~~~~~~~~~a~~~~~~~~ 306 (490)
-|......|+.++|.+......
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhC
Confidence 3444455566666655555443
No 465
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=39.19 E-value=1.1e+02 Score=19.81 Aligned_cols=17 Identities=24% Similarity=0.085 Sum_probs=8.5
Q ss_pred hcCChhHHHHHHHHHHh
Q 011236 81 SRKRFKHALQVSEWMSG 97 (490)
Q Consensus 81 ~~~~~~~a~~~~~~~~~ 97 (490)
..|++-+|-++++.+-.
T Consensus 11 n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HTT-HHHHHHHHHHHCC
T ss_pred cCCCHHHhHHHHHHHHH
Confidence 34555555555555544
No 466
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=38.95 E-value=2.1e+02 Score=23.26 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=56.3
Q ss_pred cccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011236 36 RNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIG 115 (490)
Q Consensus 36 ~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (490)
-..|...|.+.+-....+..++..+...|..-|..--...+..-.+.| ..-..+...+.+.|+ +..+....+....
T Consensus 37 e~ELr~kL~k~~~~~~~Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~ 112 (174)
T COG2137 37 EKELRRKLAKKEFSEEIIEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELID 112 (174)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccc
Confidence 345666666666666677777777777777666666666666655555 344556666677764 6666666666555
Q ss_pred hhcCHHHHHHHHHH
Q 011236 116 KVRGLESAETYFNS 129 (490)
Q Consensus 116 ~~~~~~~A~~~~~~ 129 (490)
.....+.|..++..
T Consensus 113 ~~~~~~~a~~~~~k 126 (174)
T COG2137 113 EEDEQERARKVLRK 126 (174)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555554
No 467
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=38.85 E-value=57 Score=17.74 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=10.3
Q ss_pred HHHHHHHHHHccccCCChhHH
Q 011236 120 LESAETYFNSLNDEDKVDKLY 140 (490)
Q Consensus 120 ~~~A~~~~~~~~~~~p~~~~~ 140 (490)
++.|..+|+......|++.+|
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHH
Confidence 344555555554444444444
No 468
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=38.70 E-value=2.3e+02 Score=23.63 Aligned_cols=59 Identities=7% Similarity=0.036 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhhcCHHHHHHHHH
Q 011236 69 ELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSV-HDHAVQLDLIGKVRGLESAETYFN 128 (490)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~ 128 (490)
....+.++..+.-.|+++.|.+.|.-+++... .+. ..+..-+..+.+.+.-....+.++
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~-VDiR~~W~iG~eIL~~~~~~~~~~~fl~ 100 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPE-VDIRSLWGIGAEILMRRGEQNSELEFLE 100 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCC-CChHhcchHHHHHHHcCCCcchHHHHHH
Confidence 45678889999999999999999999998752 332 233444444444444333333333
No 469
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.14 E-value=1e+02 Score=21.02 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=20.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH
Q 011236 75 VIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHA 108 (490)
Q Consensus 75 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 108 (490)
+++.+.+...-++|+++++.+.+.| ..++....
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~ 69 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG-EITPEMAK 69 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4455556666777788887777777 34544333
No 470
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=37.88 E-value=2.3e+02 Score=27.10 Aligned_cols=142 Identities=13% Similarity=0.108 Sum_probs=81.2
Q ss_pred hcCChhHHHHHHHHHHhC----CC-CCChhhHH--HHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCCh
Q 011236 81 SRKRFKHALQVSEWMSGQ----GL-AFSVHDHA--VQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLV 153 (490)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 153 (490)
+.|.++-..-+++..... |. .++..+.. .-+.+.+..|.++-...+++.-...+.+..+-++=+++.|-.|++
T Consensus 51 RnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~l 130 (615)
T KOG0508|consen 51 RNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHL 130 (615)
T ss_pred hcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchh
Confidence 667776666666644321 11 11111111 114556677888888877777644443344444455666666776
Q ss_pred hHHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHH--HHHHHHHhccCChHHHHH
Q 011236 154 DESLSLMQKMKEMGSFGSA---LNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSY--RICINSYGARSELSSMEN 228 (490)
Q Consensus 154 ~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~ 228 (490)
+-. +.+.+.|..|++ .-.+.|+-+|.+ |+ .++.+.+.+.|..++..++ |+.+.-|+.+|.++-...
T Consensus 131 eiv----KyLvE~gad~~IanrhGhTcLmIa~yk-Gh----~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~ 201 (615)
T KOG0508|consen 131 EIV----KYLVEHGADPEIANRHGHTCLMIACYK-GH----VDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQL 201 (615)
T ss_pred HHH----HHHHHcCCCCcccccCCCeeEEeeecc-Cc----hHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHH
Confidence 544 444566655443 334455544433 44 4455666677777777665 678888999999886655
Q ss_pred HHH
Q 011236 229 VLQ 231 (490)
Q Consensus 229 ~~~ 231 (490)
++.
T Consensus 202 Ll~ 204 (615)
T KOG0508|consen 202 LLK 204 (615)
T ss_pred HHh
Confidence 554
No 471
>PRK12798 chemotaxis protein; Reviewed
Probab=37.83 E-value=3.6e+02 Score=25.54 Aligned_cols=156 Identities=12% Similarity=0.055 Sum_probs=81.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhhccC-CChhhHHHHHHHHHhcCChhH
Q 011236 220 RSELSSMENVLQEMESQSHISMDWGTYSTVANYYII-AGLKEKAIIYLKKCEDIVSKS-KDALGYNHLISHYASLGNKDE 297 (490)
Q Consensus 220 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 297 (490)
.|+..++.+.+..+. ....++....|-.|+.+-.. ..+..+|+.+|+...-.-+.+ .......--+-.....|+.++
T Consensus 125 ~Gr~~~a~~~La~i~-~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~r 203 (421)
T PRK12798 125 SGRGREARKLLAGVA-PEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADK 203 (421)
T ss_pred cCCHHHHHHHhhcCC-hhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHH
Confidence 577788888887776 55555666667666665443 456777888888765433210 111223333444566777777
Q ss_pred HHHHHHHHHHhcC-CCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--chhHHHHHHHHHhcCCHHHHHHHHH
Q 011236 298 MMKFWGLQKIKCK-KQLNRD-YITMLGSLVKIGELEEAEKMLEEWELSCYCYD--FRVPNIILLGYSQKGMIEKADAVLK 373 (490)
Q Consensus 298 a~~~~~~~~~~~~-~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 373 (490)
+..+-........ .|-..- +..+..++.+.++-..- +.+..+... ..|+ ...|-.+.+.-.-.|+.+-|...-+
T Consensus 204 f~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 204 FEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 6666555554433 121111 22233333333322211 113333322 2222 2356666666666777777766666
Q ss_pred HHHHc
Q 011236 374 EIVKK 378 (490)
Q Consensus 374 ~m~~~ 378 (490)
+....
T Consensus 282 ~A~~L 286 (421)
T PRK12798 282 RALKL 286 (421)
T ss_pred HHHHh
Confidence 66554
No 472
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=37.69 E-value=3.5e+02 Score=27.35 Aligned_cols=92 Identities=11% Similarity=0.185 Sum_probs=53.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCchhHHHHHHHHHhcCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHH
Q 011236 319 TMLGSLVKIGELEEAEKMLEEWELSC--YCYDFRVPNIILLGYSQKGMIEKADAVLKE----IVKKGKTPTPNSWSIIAA 392 (490)
Q Consensus 319 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----m~~~~~~p~~~~~~~l~~ 392 (490)
+|..+|...|++-.+.++++.+.... -+.=...+|..|+...+.|.++- .+++.. +...-+.-|..||..|++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l-~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFEL-TDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccH-HHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 77888888888888888888776542 22223457777777777776643 222222 233445556667777666
Q ss_pred HHhccCCHHHHHHHHHHHH
Q 011236 393 GYADKNNMEKAFECMKEAL 411 (490)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~ 411 (490)
+-...-+-....-++.+.+
T Consensus 112 ~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 112 ASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred hhcChHhHHhccHHHHHHH
Confidence 5555333333344444443
No 473
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.65 E-value=3.6e+02 Score=26.32 Aligned_cols=15 Identities=7% Similarity=0.437 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHHHHh
Q 011236 67 ISELELQRVIRQLRS 81 (490)
Q Consensus 67 ~~~~~~~~ll~~~~~ 81 (490)
.+...++.|+..+-.
T Consensus 133 Ls~~A~NALLKtLEE 147 (484)
T PRK14956 133 LTDQSFNALLKTLEE 147 (484)
T ss_pred cCHHHHHHHHHHhhc
Confidence 456678888877754
No 474
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=37.31 E-value=94 Score=22.97 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=22.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcC
Q 011236 75 VIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRG 119 (490)
Q Consensus 75 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (490)
+++.+...+..-.|.++++.+.+.+...+..+.-..++.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444444445555566666555544455555555555555443
No 475
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=36.71 E-value=2.1e+02 Score=22.47 Aligned_cols=52 Identities=10% Similarity=0.014 Sum_probs=37.3
Q ss_pred ChhHHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 011236 136 VDKLYGALLNCYVREGL-VDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQ 187 (490)
Q Consensus 136 ~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 187 (490)
+...|.+++.+..+... --.+..+|+-|.+.+.+++..-|..+|.++.+...
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Confidence 44567888888766555 34567778888877778888888888888776533
No 476
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.71 E-value=5.3e+02 Score=27.16 Aligned_cols=258 Identities=12% Similarity=0.064 Sum_probs=121.3
Q ss_pred HHHHHhhcCHHHHHHHHHHccccCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCc
Q 011236 111 LDLIGKVRGLESAETYFNSLNDEDKV--DKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQH 188 (490)
Q Consensus 111 ~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 188 (490)
=..|...|+++.|.+.-+.- |+ ..++..-...|.+.+++..|.+++.++.+ .|..+.--+....+.
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~~ 432 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQE 432 (911)
T ss_pred HHHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCCH
Confidence 34566677777777654332 22 22344445667778888899988888733 344444445555554
Q ss_pred CcHHHHHHHHHHCCCCCCHHHHHHHH-----HHHh-ccCChH----HHHHHHH--------HHHhCCCCCCCHHHHHHHH
Q 011236 189 EKIPDVLLDMKENGVPPDNFSYRICI-----NSYG-ARSELS----SMENVLQ--------EMESQSHISMDWGTYSTVA 250 (490)
Q Consensus 189 ~~a~~~~~~m~~~~~~p~~~~~~~li-----~~~~-~~g~~~----~a~~~~~--------~~~~~~~~~~~~~~~~~li 250 (490)
+ +++.|-.=+-..++|...+-..++ ..|. +.++++ ++..-++ ++.......-+...+.+..
T Consensus 433 ~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~ 511 (911)
T KOG2034|consen 433 R-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVY 511 (911)
T ss_pred H-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHH
Confidence 4 444332222223555544433322 2221 222222 1111111 1110001111112223344
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 011236 251 NYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGEL 330 (490)
Q Consensus 251 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 330 (490)
..+...|+.+.+..+-.-|.+ |..++..+++.+.+++|++++..-. +...+--..-.+ .....
T Consensus 512 ~l~~~~~~~e~ll~fA~l~~d----------~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~ap~L-i~~~p 574 (911)
T KOG2034|consen 512 QLLASHGRQEELLQFANLIKD----------YEFVVSYWIQQENYEEALEVLLNQR------NPELFYKYAPEL-ITHSP 574 (911)
T ss_pred HHHHHccCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHhhhHH-HhcCc
Confidence 555666777666665554432 5567777888888888888876331 111111100000 11233
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 011236 331 EEAEKMLEEWELSCYCYDFRVPNIILLGYSQKG---MIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNME 401 (490)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 401 (490)
.+....+....+ ..+......++..+.+.+ ....+...++--...-..-++..+|.++..|++..+-+
T Consensus 575 ~~tV~~wm~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ 645 (911)
T KOG2034|consen 575 KETVSAWMAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDD 645 (911)
T ss_pred HHHHHHHHHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccc
Confidence 333333333222 122223333444444432 33444444444433322337888999998888776543
No 477
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=36.25 E-value=3.2e+02 Score=24.51 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=26.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 011236 213 CINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCED 271 (490)
Q Consensus 213 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 271 (490)
++..+.+.+++....+.+..+. ....-...+..+...|++..|++++.+...
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~-------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK-------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444444444444444443 111122355556666777777776666544
No 478
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.01 E-value=2.9e+02 Score=27.76 Aligned_cols=85 Identities=13% Similarity=0.136 Sum_probs=59.6
Q ss_pred hcCChhHHHHHHHHHHhCCC-CC----ChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChh
Q 011236 81 SRKRFKHALQVSEWMSGQGL-AF----SVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVD 154 (490)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 154 (490)
+..++..+.+.|+.-.+.-+ .. -...+..+.-+|.+..+++.|.+++++..+.+| ++.+---+..+.+..|..+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 45677788888876555322 11 133444556677788899999999999998876 4544455667778888999
Q ss_pred HHHHHHHHHHh
Q 011236 155 ESLSLMQKMKE 165 (490)
Q Consensus 155 ~a~~~~~~m~~ 165 (490)
+|+.+......
T Consensus 446 ~AL~~~~~~~s 456 (872)
T KOG4814|consen 446 EALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHh
Confidence 99888776654
No 479
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=35.80 E-value=1.9e+02 Score=21.67 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=50.6
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHH
Q 011236 46 LGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAET 125 (490)
Q Consensus 46 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 125 (490)
.|-+.+.+..+++.+...|.--|..-....+......+. .....+-..+.+.|+ +.......+. .....+.|..
T Consensus 4 kg~~~e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~-~G~~~I~~~L~~kGi--~~~~i~~~l~---~~~~~e~a~~ 77 (121)
T PF02631_consen 4 KGFSEEAIEEVIDRLKELGYIDDERYAESYVRSRLRRKG-KGPRRIRQKLKQKGI--DREIIEEALE---EYDEEEEALE 77 (121)
T ss_dssp TT--HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHTT----HHHHHHHHT---CS-HHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccccc-ccHHHHHHHHHHHCC--ChHHHHHHHH---HhhHHHHHHH
Confidence 344566677788888888888676666777777665332 334556677777775 4444443333 2222233444
Q ss_pred HHHHccccC---CChhHHHHHHHHHHhcC
Q 011236 126 YFNSLNDED---KVDKLYGALLNCYVREG 151 (490)
Q Consensus 126 ~~~~~~~~~---p~~~~~~~li~~~~~~g 151 (490)
+.+.-.... ++......++..+.+.|
T Consensus 78 ~~~kk~~~~~~~~~~~~~~K~~~~L~rrG 106 (121)
T PF02631_consen 78 LAEKKYRRYRKPSDRKRKQKLIRFLMRRG 106 (121)
T ss_dssp HHHHHHHHTTTS-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 443322211 34444555555555554
No 480
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.58 E-value=2.6e+02 Score=23.22 Aligned_cols=26 Identities=23% Similarity=0.079 Sum_probs=15.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 387 WSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
+....-...+.|++++|..-++++.+
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~ 57 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASE 57 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555666666666666665544
No 481
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.55 E-value=2.5e+02 Score=23.09 Aligned_cols=114 Identities=7% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhhHH----HHHHHHHhhcC----------------HHHHHHHHHHc
Q 011236 72 LQRVIRQLRSRKRFKHALQVSEWMSGQGL-AFSVHDHA----VQLDLIGKVRG----------------LESAETYFNSL 130 (490)
Q Consensus 72 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~----~l~~~~~~~~~----------------~~~A~~~~~~~ 130 (490)
|-.-+-.+-+.|+..+-.+.-+-+...-. +....+.. .++..+.+-.+ ++.|+.+|+.+
T Consensus 16 yf~~~c~aFR~~r~~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~~~I 95 (200)
T cd00280 16 YFHSACRAFREGRYEDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMVLESI 95 (200)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHHHHHH
Q ss_pred cccCCChhHH---------HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCc
Q 011236 131 NDEDKVDKLY---------GALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQH 188 (490)
Q Consensus 131 ~~~~p~~~~~---------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 188 (490)
.+..+...+. -..+-.|.+.|.+++|.+++++.... |+......-+....+..+.
T Consensus 96 ~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 96 EKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcccc
No 482
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=35.53 E-value=95 Score=23.18 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCH
Q 011236 73 QRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGL 120 (490)
Q Consensus 73 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (490)
..++..+...+..-.|.++++.+.+.+...+..+.-..+..+...|-+
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 345666666666777777777777777666666666666666666543
No 483
>PHA03100 ankyrin repeat protein; Provisional
Probab=35.19 E-value=4.3e+02 Score=25.65 Aligned_cols=166 Identities=9% Similarity=0.067 Sum_probs=67.9
Q ss_pred HHHHHHHcCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh--HHHHHHH-----HHhhcCHHHHHHH
Q 011236 56 VLDQWVLEGQKISELE--LQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHD--HAVQLDL-----IGKVRGLESAETY 126 (490)
Q Consensus 56 ~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~-----~~~~~~~~~A~~~ 126 (490)
+++.+...+...+... -...+...++.|+.+ +++.+.+.|..++... ....+.. .+..|..+-+.-+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~L 92 (480)
T PHA03100 17 NIKYIIMEDDLNDYSYKKPVLPLYLAKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLL 92 (480)
T ss_pred HHHHHHhcCccchhhhcccchhhhhhhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHH
Confidence 4555555443333322 223344445555543 3444445554332211 1122333 4455555555444
Q ss_pred HHHccccC-CChhHHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCCcchH--HHHHHHHHhcCCcCcHHHHHHHHHHCC
Q 011236 127 FNSLNDED-KVDKLYGALLNCYV-REGLVDESLSLMQKMKEMGSFGSALNY--NGIMCLYTNTGQHEKIPDVLLDMKENG 202 (490)
Q Consensus 127 ~~~~~~~~-p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~m~~~~ 202 (490)
++.-.... ++..-.+.|..+.. ..|+.+ +++.+.+.|..++.... .+.+..++..|. .-.++++.+.+.|
T Consensus 93 l~~ga~i~~~d~~g~tpL~~A~~~~~~~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g 166 (480)
T PHA03100 93 LEYGANVNAPDNNGITPLLYAISKKSNSYS----IVEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKG 166 (480)
T ss_pred HHCCCCCCCCCCCCCchhhHHHhcccChHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCC
Confidence 44322211 12222333333322 444443 33444455544432211 223333444442 2234455556666
Q ss_pred CCCCHHH--HHHHHHHHhccCChHHHHHHHH
Q 011236 203 VPPDNFS--YRICINSYGARSELSSMENVLQ 231 (490)
Q Consensus 203 ~~p~~~~--~~~li~~~~~~g~~~~a~~~~~ 231 (490)
..++... -.+.+...+..|+.+-+.-+++
T Consensus 167 ~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~ 197 (480)
T PHA03100 167 VDINAKNRYGYTPLHIAVEKGNIDVIKFLLD 197 (480)
T ss_pred CCcccccCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 5544322 1234445555665554444443
No 484
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=35.15 E-value=6.1e+02 Score=27.39 Aligned_cols=271 Identities=10% Similarity=-0.017 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 011236 154 DESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEM 233 (490)
Q Consensus 154 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 233 (490)
..+...+-.+... +|..+--..+..+.+.+..+....+...+.. +|...-...+.++.+.+........+..+
T Consensus 620 ~~~~~~L~~~L~D---~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D----~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~ 692 (897)
T PRK13800 620 APSVAELAPYLAD---PDPGVRRTAVAVLTETTPPGFGPALVAALGD----GAAAVRRAAAEGLRELVEVLPPAPALRDH 692 (897)
T ss_pred chhHHHHHHHhcC---CCHHHHHHHHHHHhhhcchhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhccCchHHHHHH
Q ss_pred HhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCC
Q 011236 234 ESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQL 313 (490)
Q Consensus 234 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 313 (490)
. +. +|..+-...+.++...+..+ ...+...+.. +|...-...+.++...+..+.....+. .++
T Consensus 693 L-~~---~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D-----~d~~VR~~Av~aL~~~~~~~~l~~~l~-------D~~ 755 (897)
T PRK13800 693 L-GS---PDPVVRAAALDVLRALRAGD-AALFAAALGD-----PDHRVRIEAVRALVSVDDVESVAGAAT-------DEN 755 (897)
T ss_pred h-cC---CCHHHHHHHHHHHHhhccCC-HHHHHHHhcC-----CCHHHHHHHHHHHhcccCcHHHHHHhc-------CCC
Q ss_pred hhhHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011236 314 NRDYITMLGSLVKIGELEE-AEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAA 392 (490)
Q Consensus 314 ~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 392 (490)
...-...+.++...+..+. +...+..+.+. +|...-...+.++.+.|..+.+...+..+.+. +|..+-...+.
T Consensus 756 ~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D---~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~ 829 (897)
T PRK13800 756 REVRIAVAKGLATLGAGGAPAGDAVRALTGD---PDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAAR 829 (897)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHhcC---CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHH
Q ss_pred HHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc---hhhhHHH
Q 011236 393 GYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK---RNMYHAL 463 (490)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~l 463 (490)
++.+.+..+..-.+.....+ |+...-...+.++.+.+....+...+..+.+.... .....+|
T Consensus 830 aL~~l~~~~a~~~L~~~L~D---------~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~~aL 894 (897)
T PRK13800 830 ALAGAAADVAVPALVEALTD---------PHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYARRAL 894 (897)
T ss_pred HHHhccccchHHHHHHHhcC---------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHHHHH
No 485
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=35.12 E-value=3e+02 Score=23.80 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=51.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHH
Q 011236 212 ICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYII-AGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHY 289 (490)
Q Consensus 212 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (490)
.++..+-..|+++++...+.++. ..+...+..-.+.+-.+|-. .|....+++++..+...... ........++.-|
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~-~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~-~~~~~~~~~i~~y 82 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLI-EMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEEN-KGNEKQVKLIKDY 82 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHH-HTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH-ccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcc-cchhHHHHHHHHH
Confidence 46677788999999999999999 66777888888877777743 46667778888777665543 2223344444444
No 486
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=34.89 E-value=2e+02 Score=21.78 Aligned_cols=12 Identities=25% Similarity=0.243 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 011236 330 LEEAEKMLEEWE 341 (490)
Q Consensus 330 ~~~a~~~~~~~~ 341 (490)
+..|...+++..
T Consensus 5 f~kAl~~L~~a~ 16 (123)
T TIGR01987 5 FEQALMQLSDAN 16 (123)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 487
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=34.89 E-value=2.3e+02 Score=22.43 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=27.2
Q ss_pred ccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 011236 37 NNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGL 100 (490)
Q Consensus 37 ~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 100 (490)
..|...|.+.|-+.+.+..+++.+...|.--|..-....+..... .-..-..+-..+.+.|+
T Consensus 29 ~el~~kL~~kg~~~~~i~~vl~~l~~~~~ldD~~~a~~~~~~~~~--~~~g~~~I~~~L~~kGi 90 (157)
T PRK00117 29 AELRRKLAAKGFSEEVIEAVLDRLKEEGLLDDERFAESFVRSRAR--KGYGPRRIRQELRQKGV 90 (157)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--CCchHHHHHHHHHHcCC
Confidence 344444555555555555555555555544444333333333311 11223344445555554
No 488
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.61 E-value=1.5e+02 Score=21.82 Aligned_cols=35 Identities=6% Similarity=0.050 Sum_probs=14.0
Q ss_pred CCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 011236 186 GQHEKIPDVLLDMKENGVPPDNFSYRICINSYGAR 220 (490)
Q Consensus 186 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 220 (490)
+..-.|.++++.+.+.+...+..|.--.++.+...
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~ 48 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEA 48 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC
Confidence 33344444444444443333333333333333333
No 489
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=34.53 E-value=38 Score=22.13 Aligned_cols=28 Identities=14% Similarity=0.363 Sum_probs=20.4
Q ss_pred hhHHHHHHHHhcC-CcHHHHHHHHHhCCC
Q 011236 459 MYHALTEAHIRSG-QEVDGLLESMKADDI 486 (490)
Q Consensus 459 ~~~~l~~~~~~~g-~~a~~~~~~m~~~~~ 486 (490)
+=.++++--.+.| .+|..++++|.+.|+
T Consensus 21 ~S~S~lQR~~rIGynrAariid~LE~~Gi 49 (65)
T PF09397_consen 21 ASISLLQRKFRIGYNRAARIIDQLEEEGI 49 (65)
T ss_dssp ECHHHHHHHHT--HHHHHHHHHHHHHCTS
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 3456777777888 888899999988876
No 490
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.27 E-value=2.5e+02 Score=22.69 Aligned_cols=25 Identities=12% Similarity=-0.048 Sum_probs=11.2
Q ss_pred cCCcCcHHHHHHHHHHCCCCCCHHH
Q 011236 185 TGQHEKIPDVLLDMKENGVPPDNFS 209 (490)
Q Consensus 185 ~~~~~~a~~~~~~m~~~~~~p~~~~ 209 (490)
.+..-.|.++++.+.+.+...+..|
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aT 62 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPT 62 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcch
Confidence 3344445555555544444334333
No 491
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=33.82 E-value=4.6e+02 Score=25.58 Aligned_cols=241 Identities=11% Similarity=0.020 Sum_probs=131.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcc------CChHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCHHH-HH
Q 011236 192 PDVLLDMKENGVPPDNFSYRICINSYGAR------SELSSMENVLQEMESQSHISMD-WGTYSTVANYYIIAGLKEK-AI 263 (490)
Q Consensus 192 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~------g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~-a~ 263 (490)
..+|++..+. -|+...++..|..|... ..+.....+++......+..++ ...|..+.-.+++.....+ |.
T Consensus 302 ~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~ 379 (568)
T KOG2396|consen 302 CAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAV 379 (568)
T ss_pred HHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHH
Confidence 3556555542 35556666666666432 2344556666666533333333 4455556556665554333 33
Q ss_pred HHHHHHhhhhccCCChhhHHHHHHHHHhcC-ChhHHH-HHHHHHHHhcCCCChhhHHHHHHHHHhcCC-HHHH--HHHHH
Q 011236 264 IYLKKCEDIVSKSKDALGYNHLISHYASLG-NKDEMM-KFWGLQKIKCKKQLNRDYITMLGSLVKIGE-LEEA--EKMLE 338 (490)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a--~~~~~ 338 (490)
.+..+ ... .+...|-.-++...+.. +.+--. .++......-..+....|+... .|+ .+.. ..++.
T Consensus 380 ~l~~e----~f~-~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 380 KLTTE----LFR-DSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS 449 (568)
T ss_pred HhhHH----Hhc-chHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence 33323 222 45555555444444221 222111 1122222221122233333333 222 1111 12223
Q ss_pred HHHhcCCCCCchh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHhhh
Q 011236 339 EWELSCYCYDFRV-PNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD--KNNMEKAFECMKEALAVHE 415 (490)
Q Consensus 339 ~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~ 415 (490)
..... ..|+..+ -+.+++.+-+.|-..+|..++..+... ++|....|..+|+.-.. .-+...+..+++.|..
T Consensus 450 a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~--- 524 (568)
T KOG2396|consen 450 ALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALR--- 524 (568)
T ss_pred HHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHH---
Confidence 33333 3445444 466788888899999999999999887 45688888888874322 2337778889999887
Q ss_pred cCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 416 ENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 416 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
..| .++..|...+.--...|..+.+-.++-++.+
T Consensus 525 -~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 525 -EFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred -HhC--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 235 7777787777777788888888777765544
No 492
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.81 E-value=3.6e+02 Score=24.35 Aligned_cols=71 Identities=8% Similarity=0.131 Sum_probs=43.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH----------cCCHHH
Q 011236 192 PDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYII----------AGLKEK 261 (490)
Q Consensus 192 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~~~~~~ 261 (490)
.++++.+...++.|.-+++.-+.-.+...=.+..++.+++.+. ..... |..|+..||. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~-sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL-SDPQR-----FDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh-cChhh-----hHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4566666666777777776666666666666677777777765 22211 3344444432 477777
Q ss_pred HHHHHHH
Q 011236 262 AIIYLKK 268 (490)
Q Consensus 262 a~~~~~~ 268 (490)
.+++++.
T Consensus 337 nmkLLQ~ 343 (370)
T KOG4567|consen 337 NMKLLQN 343 (370)
T ss_pred HHHHHhc
Confidence 7777665
No 493
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.79 E-value=4.6e+02 Score=25.62 Aligned_cols=31 Identities=0% Similarity=0.008 Sum_probs=16.4
Q ss_pred CCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHc
Q 011236 98 QGLAFSVHDHAVQLDLIGKVRGLESAETYFNSL 130 (490)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 130 (490)
.|+..+......++. ...|++..|+.+++++
T Consensus 196 Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~ 226 (484)
T PRK14956 196 ENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQA 226 (484)
T ss_pred cCCCCCHHHHHHHHH--HcCChHHHHHHHHHHH
Confidence 344445555444432 2346666777776654
No 494
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.11 E-value=1.9e+02 Score=21.10 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=10.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 011236 249 VANYYIIAGLKEKAIIYLKKC 269 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~~ 269 (490)
++.-|...++.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444455555555555555554
No 495
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.99 E-value=1.9e+02 Score=20.88 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 369 DAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 369 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
.+.+++....+....+.....|.-.|++.|+.+.|.+-|+.-..
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa 100 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA 100 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence 34444444443332333344455556666666666666655443
No 496
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=32.98 E-value=5e+02 Score=27.67 Aligned_cols=20 Identities=10% Similarity=-0.194 Sum_probs=10.4
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 011236 249 VANYYIIAGLKEKAIIYLKK 268 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~ 268 (490)
.+...+..|+.+-+..+++.
T Consensus 625 ~L~~Aa~~g~~~~v~~Ll~~ 644 (823)
T PLN03192 625 LLCTAAKRNDLTAMKELLKQ 644 (823)
T ss_pred HHHHHHHhCCHHHHHHHHHC
Confidence 34445555666555555443
No 497
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=32.93 E-value=2.5e+02 Score=23.47 Aligned_cols=65 Identities=9% Similarity=-0.030 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 011236 385 NSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQ 455 (490)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 455 (490)
...+.++..|.-.|+++.|-++|.-++. .. ..|. ..|..=+..+.+.+......++++.+....+
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR----~~--~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIR----CP--EVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHc----CC--CCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 4566777777777888888888877776 11 2333 2344444455555554444455555554433
No 498
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=31.63 E-value=3.8e+02 Score=24.02 Aligned_cols=53 Identities=6% Similarity=-0.039 Sum_probs=30.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 011236 249 VANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIK 308 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (490)
++..+.+.++..+..+.+..+... ..-...++.+...|++..|++++.+....
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~v-------~~~~~~l~~ll~~~dy~~Al~li~~~~~~ 156 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKTV-------QQTQSRLQELLEEGDYPGALDLIEECQQL 156 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 445555555655555555555332 22334555666778888888877755443
No 499
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=31.63 E-value=1.8e+02 Score=20.21 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=21.2
Q ss_pred HHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHH
Q 011236 113 LIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDES 156 (490)
Q Consensus 113 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 156 (490)
.....|+.+.|..+++.+. .+|+ .+..++.++-..|..+-|
T Consensus 41 ~~~~~G~~~aa~~Ll~~L~-r~~~--Wf~~Fl~AL~~~~~~~LA 81 (84)
T cd08789 41 AENNSGNIKAAWTLLDTLV-RRDN--WLEPFLDALRECGLGHLA 81 (84)
T ss_pred HHhcCChHHHHHHHHHHHh-ccCC--hHHHHHHHHHHcCCHHHH
Confidence 3334455556666666555 3333 355555555555544433
No 500
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.61 E-value=4e+02 Score=26.88 Aligned_cols=88 Identities=18% Similarity=0.074 Sum_probs=55.5
Q ss_pred HHcCCHHHHHHHHHHHhhhhccC--CC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 011236 254 IIAGLKEKAIIYLKKCEDIVSKS--KD--ALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGE 329 (490)
Q Consensus 254 ~~~~~~~~a~~~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 329 (490)
.+..++..+.+.|..-....+.. .+ ...+..|-.+|.+..++|.|.+++++..+..+ .+..+-..+..+....|.
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~-~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR-QSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhcc
Confidence 34566777777776544333210 00 13355666677777888888888887766554 455555666677777788
Q ss_pred HHHHHHHHHHHHh
Q 011236 330 LEEAEKMLEEWEL 342 (490)
Q Consensus 330 ~~~a~~~~~~~~~ 342 (490)
.++|.........
T Consensus 444 Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 444 SEEALTCLQKIKS 456 (872)
T ss_pred hHHHHHHHHHHHh
Confidence 8888777766543
Done!