Query 011236
Match_columns 490
No_of_seqs 639 out of 2789
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 03:58:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.1E-41 2.8E-45 332.1 35.5 436 34-485 85-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-37 4.7E-42 308.8 37.9 403 66-485 81-546 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8.4E-31 2.9E-35 245.6 45.7 380 75-471 5-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.2E-29 1.1E-33 234.8 41.2 360 110-484 5-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 4.6E-31 1.6E-35 251.2 24.3 212 191-435 9-221 (501)
6 4g26_A Pentatricopeptide repea 100.0 3.6E-31 1.2E-35 251.9 23.1 206 154-361 7-222 (501)
7 2gw1_A Mitochondrial precursor 100.0 1.7E-25 6E-30 217.5 38.6 405 69-483 6-477 (514)
8 2y4t_A DNAJ homolog subfamily 100.0 5.3E-25 1.8E-29 210.4 37.6 366 66-471 23-439 (450)
9 2y4t_A DNAJ homolog subfamily 100.0 4.4E-25 1.5E-29 211.0 36.0 377 32-442 25-443 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.7E-24 5.8E-29 211.8 37.5 403 69-485 25-492 (537)
11 2gw1_A Mitochondrial precursor 99.9 3.3E-25 1.1E-29 215.6 30.6 411 36-463 9-489 (514)
12 3fp2_A TPR repeat-containing p 99.9 1.2E-21 4.2E-26 191.5 41.3 403 34-456 26-494 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 5.5E-21 1.9E-25 176.5 36.8 303 68-378 2-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1E-20 3.4E-25 174.8 38.1 327 104-469 3-352 (359)
15 3hym_B Cell division cycle pro 99.9 3E-20 1E-24 169.5 31.8 289 103-399 21-320 (330)
16 2ooe_A Cleavage stimulation fa 99.9 1.8E-18 6.2E-23 168.4 44.6 404 66-483 10-491 (530)
17 3hym_B Cell division cycle pro 99.9 7E-20 2.4E-24 167.1 32.2 290 135-439 20-320 (330)
18 2xm6_A Protein corresponding t 99.9 5.8E-18 2E-22 163.1 44.4 368 67-469 37-452 (490)
19 1fch_A Peroxisomal targeting s 99.9 2.2E-20 7.5E-25 173.3 24.9 271 173-450 65-356 (368)
20 1fch_A Peroxisomal targeting s 99.9 3.2E-20 1.1E-24 172.2 24.6 290 117-412 38-358 (368)
21 4eqf_A PEX5-related protein; a 99.8 3.5E-19 1.2E-23 165.0 25.7 272 171-449 64-352 (365)
22 4eqf_A PEX5-related protein; a 99.8 5.6E-20 1.9E-24 170.4 19.1 270 138-412 66-355 (365)
23 2xm6_A Protein corresponding t 99.8 2.3E-16 8E-21 151.9 44.2 364 87-486 25-434 (490)
24 3cv0_A Peroxisome targeting si 99.8 1.4E-18 4.9E-23 158.2 24.6 271 175-453 24-315 (327)
25 3cv0_A Peroxisome targeting si 99.8 7.1E-19 2.4E-23 160.2 22.4 280 106-414 23-316 (327)
26 2ooe_A Cleavage stimulation fa 99.8 1.5E-16 5E-21 154.9 40.0 379 92-485 2-455 (530)
27 4g1t_A Interferon-induced prot 99.8 7.4E-17 2.5E-21 154.9 36.0 400 47-485 25-460 (472)
28 4g1t_A Interferon-induced prot 99.8 1.8E-16 6.1E-21 152.2 37.4 387 35-461 53-468 (472)
29 1b89_A Protein (clathrin heavy 99.8 6.1E-19 2.1E-23 160.2 17.2 237 83-361 17-253 (449)
30 1b89_A Protein (clathrin heavy 99.8 3.1E-18 1.1E-22 155.6 20.4 280 46-370 16-303 (449)
31 3mkr_A Coatomer subunit epsilo 99.8 3.6E-17 1.2E-21 145.5 26.2 251 114-379 9-265 (291)
32 3mkr_A Coatomer subunit epsilo 99.8 1.8E-17 6.1E-22 147.5 24.0 277 76-371 6-287 (291)
33 3spa_A Mtrpol, DNA-directed RN 99.8 2.9E-20 1E-24 182.0 3.6 156 137-293 127-286 (1134)
34 1xi4_A Clathrin heavy chain; a 99.8 6.8E-15 2.3E-19 149.2 41.3 355 66-482 982-1340(1630)
35 3spa_A Mtrpol, DNA-directed RN 99.8 6.2E-19 2.1E-23 172.8 9.7 113 280-392 128-244 (1134)
36 1xi4_A Clathrin heavy chain; a 99.8 6E-15 2E-19 149.6 36.2 379 32-475 984-1375(1630)
37 3uq3_A Heat shock protein STI1 99.8 6E-16 2E-20 135.5 25.4 228 207-454 5-237 (258)
38 3e4b_A ALGK; tetratricopeptide 99.7 1.8E-15 6E-20 143.6 26.6 369 75-481 9-418 (452)
39 2pl2_A Hypothetical conserved 99.7 1.1E-15 3.8E-20 129.8 22.3 198 205-410 3-211 (217)
40 3uq3_A Heat shock protein STI1 99.7 8.7E-16 3E-20 134.5 22.3 227 137-379 5-237 (258)
41 2pl2_A Hypothetical conserved 99.7 1.7E-15 5.9E-20 128.6 21.6 200 240-452 2-213 (217)
42 3u4t_A TPR repeat-containing p 99.7 4.6E-15 1.6E-19 131.1 23.5 250 209-468 5-266 (272)
43 3u4t_A TPR repeat-containing p 99.7 7.1E-15 2.4E-19 129.9 24.7 196 106-306 5-206 (272)
44 2h6f_A Protein farnesyltransfe 99.7 8.5E-15 2.9E-19 134.6 25.4 248 208-469 98-365 (382)
45 2ho1_A Type 4 fimbrial biogene 99.7 1.5E-14 5.2E-19 126.1 26.1 203 244-456 38-241 (252)
46 2vq2_A PILW, putative fimbrial 99.7 3.6E-14 1.2E-18 121.2 26.5 205 243-456 8-214 (225)
47 3sf4_A G-protein-signaling mod 99.7 3.9E-15 1.3E-19 139.7 22.0 298 137-471 9-361 (406)
48 4e6h_A MRNA 3'-END-processing 99.7 5.4E-12 1.9E-16 123.7 43.7 425 49-485 48-571 (679)
49 2q7f_A YRRB protein; TPR, prot 99.7 4.2E-15 1.4E-19 128.9 19.6 197 209-412 25-221 (243)
50 2ho1_A Type 4 fimbrial biogene 99.7 3.4E-14 1.2E-18 123.9 24.7 199 208-412 38-237 (252)
51 2h6f_A Protein farnesyltransfe 99.7 1.9E-14 6.6E-19 132.2 23.7 247 138-394 98-363 (382)
52 1xnf_A Lipoprotein NLPI; TPR, 99.7 3.7E-15 1.3E-19 131.9 18.3 196 209-412 45-243 (275)
53 2q7f_A YRRB protein; TPR, prot 99.7 1.1E-14 3.9E-19 126.1 20.5 211 242-463 22-233 (243)
54 3sf4_A G-protein-signaling mod 99.7 4.8E-15 1.6E-19 139.1 19.4 307 102-440 7-363 (406)
55 2vq2_A PILW, putative fimbrial 99.7 6.9E-14 2.3E-18 119.5 24.7 202 206-412 7-210 (225)
56 1xnf_A Lipoprotein NLPI; TPR, 99.7 7.4E-14 2.5E-18 123.4 25.4 248 217-478 15-269 (275)
57 4a1s_A PINS, partner of inscut 99.6 1.5E-14 5.2E-19 136.1 21.1 283 173-456 49-375 (411)
58 4a1s_A PINS, partner of inscut 99.6 8.6E-15 2.9E-19 137.8 18.5 275 137-412 48-371 (411)
59 3e4b_A ALGK; tetratricopeptide 99.6 1.9E-14 6.5E-19 136.5 20.8 379 39-453 9-421 (452)
60 1ouv_A Conserved hypothetical 99.6 6.5E-13 2.2E-17 117.3 29.4 226 206-456 5-254 (273)
61 3ro2_A PINS homolog, G-protein 99.6 1.7E-14 5.9E-19 131.4 19.5 283 140-454 8-333 (338)
62 1ouv_A Conserved hypothetical 99.6 1.3E-12 4.3E-17 115.4 30.8 223 242-486 5-253 (273)
63 3ro2_A PINS homolog, G-protein 99.6 5.7E-14 1.9E-18 127.9 20.7 275 209-485 7-333 (338)
64 3vtx_A MAMA; tetratricopeptide 99.6 4.5E-13 1.5E-17 110.6 22.9 166 242-412 4-169 (184)
65 2ond_A Cleavage stimulation fa 99.6 2.4E-12 8.2E-17 115.7 27.5 222 224-456 33-273 (308)
66 4abn_A Tetratricopeptide repea 99.6 1.6E-13 5.4E-18 131.0 19.1 207 259-478 84-315 (474)
67 3ulq_A Response regulator aspa 99.6 1.3E-12 4.4E-17 121.6 24.6 232 213-453 109-368 (383)
68 2ond_A Cleavage stimulation fa 99.5 6.1E-12 2.1E-16 113.0 27.7 218 154-378 33-270 (308)
69 3vtx_A MAMA; tetratricopeptide 99.5 1.5E-12 5.3E-17 107.3 21.4 171 277-456 3-173 (184)
70 3ulq_A Response regulator aspa 99.5 2.7E-12 9.3E-17 119.3 24.5 233 249-483 109-367 (383)
71 4e6h_A MRNA 3'-END-processing 99.5 1E-10 3.5E-15 114.7 35.8 393 85-486 48-535 (679)
72 3q15_A PSP28, response regulat 99.5 1.3E-11 4.5E-16 114.5 27.5 233 212-453 106-365 (378)
73 1hz4_A MALT regulatory protein 99.5 1.6E-11 5.5E-16 113.7 27.7 273 140-412 17-321 (373)
74 4abn_A Tetratricopeptide repea 99.5 6.7E-13 2.3E-17 126.7 18.4 212 119-336 83-314 (474)
75 3nf1_A KLC 1, kinesin light ch 99.5 2.4E-13 8.1E-18 122.4 13.3 131 209-341 29-180 (311)
76 3nf1_A KLC 1, kinesin light ch 99.5 8.4E-14 2.9E-18 125.4 10.0 239 136-412 26-306 (311)
77 3as5_A MAMA; tetratricopeptide 99.5 1.6E-11 5.6E-16 101.0 21.1 165 244-413 9-173 (186)
78 3q15_A PSP28, response regulat 99.4 5.4E-11 1.8E-15 110.3 25.8 233 248-483 106-364 (378)
79 1hz4_A MALT regulatory protein 99.4 2.2E-10 7.6E-15 106.0 28.3 306 175-485 17-350 (373)
80 4i17_A Hypothetical protein; T 99.4 5.8E-11 2E-15 101.5 21.4 207 241-465 5-222 (228)
81 3as5_A MAMA; tetratricopeptide 99.4 5.7E-11 2E-15 97.7 20.6 166 208-379 9-174 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.4 2.9E-11 9.9E-16 120.1 20.6 167 243-414 9-175 (723)
83 4gyw_A UDP-N-acetylglucosamine 99.4 3.3E-11 1.1E-15 119.7 20.5 169 278-456 8-177 (723)
84 4i17_A Hypothetical protein; T 99.3 1.6E-10 5.5E-15 98.7 20.4 150 171-325 6-164 (228)
85 3edt_B KLC 2, kinesin light ch 99.3 4.1E-11 1.4E-15 106.0 16.7 227 184-412 13-280 (283)
86 3edt_B KLC 2, kinesin light ch 99.3 4.4E-11 1.5E-15 105.8 16.9 235 218-453 12-281 (283)
87 3mv2_B Coatomer subunit epsilo 99.3 1.1E-09 3.8E-14 95.4 23.3 176 298-483 85-281 (310)
88 1qqe_A Vesicular transport pro 99.3 4.3E-10 1.5E-14 100.0 20.6 246 189-456 2-272 (292)
89 3mv2_B Coatomer subunit epsilo 99.2 6.4E-09 2.2E-13 90.7 24.1 181 226-412 85-281 (310)
90 3qky_A Outer membrane assembly 99.2 9.2E-10 3.1E-14 96.2 18.6 185 207-412 15-223 (261)
91 2fo7_A Synthetic consensus TPR 99.2 2E-09 7E-14 83.0 17.3 125 285-412 7-131 (136)
92 1qqe_A Vesicular transport pro 99.2 3.2E-09 1.1E-13 94.4 20.8 238 154-412 2-268 (292)
93 2fo7_A Synthetic consensus TPR 99.2 2.5E-09 8.6E-14 82.5 17.7 131 245-379 3-133 (136)
94 3urz_A Uncharacterized protein 99.2 1.6E-09 5.6E-14 90.9 17.6 159 248-412 9-185 (208)
95 3qky_A Outer membrane assembly 99.2 2.3E-09 7.9E-14 93.6 19.2 208 241-471 13-246 (261)
96 2pzi_A Probable serine/threoni 99.2 9.8E-10 3.4E-14 109.6 17.8 172 254-438 402-582 (681)
97 2uy1_A Cleavage stimulation fa 99.1 2E-08 6.9E-13 95.6 25.4 200 260-482 196-411 (493)
98 3urz_A Uncharacterized protein 99.1 2.6E-09 8.8E-14 89.7 16.9 168 280-457 5-190 (208)
99 3dra_A Protein farnesyltransfe 99.1 6.8E-08 2.3E-12 85.1 26.1 218 84-307 48-286 (306)
100 4ga2_A E3 SUMO-protein ligase 99.1 2.7E-10 9.2E-15 90.0 9.1 142 321-471 4-148 (150)
101 2pzi_A Probable serine/threoni 99.1 4.2E-09 1.4E-13 105.1 19.8 175 218-399 402-583 (681)
102 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.3E-08 4.5E-13 86.5 20.0 194 242-456 3-216 (225)
103 3dra_A Protein farnesyltransfe 99.1 8.7E-08 3E-12 84.4 25.5 232 224-465 50-301 (306)
104 4ga2_A E3 SUMO-protein ligase 99.1 1.2E-09 4E-14 86.3 11.8 143 251-398 5-148 (150)
105 2r5s_A Uncharacterized protein 99.1 3.1E-09 1E-13 86.6 14.2 162 246-412 9-172 (176)
106 2yhc_A BAMD, UPF0169 lipoprote 99.0 5.5E-08 1.9E-12 82.6 21.6 187 206-412 3-212 (225)
107 2vsy_A XCC0866; transferase, g 99.0 5.9E-09 2E-13 102.2 17.3 152 256-412 2-156 (568)
108 3qou_A Protein YBBN; thioredox 99.0 7.5E-09 2.6E-13 91.6 16.2 162 104-269 117-281 (287)
109 2r5s_A Uncharacterized protein 99.0 3.6E-09 1.2E-13 86.2 12.7 162 280-452 7-172 (176)
110 2ifu_A Gamma-SNAP; membrane fu 99.0 1.7E-08 5.7E-13 90.4 18.0 232 185-446 4-254 (307)
111 3qou_A Protein YBBN; thioredox 99.0 1.3E-08 4.4E-13 90.1 16.9 161 281-449 119-280 (287)
112 2ifu_A Gamma-SNAP; membrane fu 99.0 1.5E-08 5.1E-13 90.7 17.2 219 220-468 4-244 (307)
113 3u3w_A Transcriptional activat 99.0 1.4E-07 4.6E-12 83.9 23.4 169 284-452 80-265 (293)
114 2vsy_A XCC0866; transferase, g 99.0 1.5E-08 5E-13 99.3 18.3 154 185-344 2-158 (568)
115 2uy1_A Cleavage stimulation fa 99.0 2.4E-07 8.1E-12 88.3 26.0 340 85-481 11-380 (493)
116 3u3w_A Transcriptional activat 98.9 2.2E-07 7.5E-12 82.5 21.5 211 194-414 33-267 (293)
117 4gco_A Protein STI-1; structur 98.9 4.2E-08 1.4E-12 74.6 13.5 107 351-465 15-123 (126)
118 3rjv_A Putative SEL1 repeat pr 98.9 7.9E-08 2.7E-12 80.7 16.5 160 139-309 20-198 (212)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.3E-07 4.5E-12 79.4 17.9 125 282-412 9-149 (213)
120 3rjv_A Putative SEL1 repeat pr 98.9 3.4E-07 1.2E-11 76.8 20.1 177 262-456 5-200 (212)
121 2qfc_A PLCR protein; TPR, HTH, 98.9 6.3E-07 2.2E-11 79.5 22.7 174 279-452 75-265 (293)
122 3dss_A Geranylgeranyl transfer 98.9 3.7E-06 1.3E-10 74.5 27.0 198 259-468 90-320 (331)
123 3gw4_A Uncharacterized protein 98.9 3.3E-08 1.1E-12 82.4 13.4 102 351-452 68-175 (203)
124 3q7a_A Farnesyltransferase alp 98.9 1.2E-06 4.1E-11 78.0 23.3 174 80-258 65-257 (349)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.3E-07 1.5E-11 76.2 18.9 125 248-379 11-151 (213)
126 3q7a_A Farnesyltransferase alp 98.8 2.5E-06 8.5E-11 76.0 23.9 220 151-377 68-330 (349)
127 1na0_A Designed protein CTPR3; 98.8 2E-07 6.7E-12 70.5 14.6 113 350-469 10-123 (125)
128 4gco_A Protein STI-1; structur 98.8 2.1E-07 7.3E-12 70.6 14.4 96 315-412 14-109 (126)
129 2c2l_A CHIP, carboxy terminus 98.8 5.3E-08 1.8E-12 85.8 12.6 194 68-271 3-198 (281)
130 3gyz_A Chaperone protein IPGC; 98.8 1.2E-07 4.2E-12 74.3 13.2 95 316-412 38-132 (151)
131 3gyz_A Chaperone protein IPGC; 98.8 1.1E-07 3.6E-12 74.7 12.7 101 348-456 35-136 (151)
132 2lni_A Stress-induced-phosphop 98.8 2.1E-07 7.1E-12 71.3 14.1 115 349-470 16-131 (133)
133 1a17_A Serine/threonine protei 98.8 3.8E-07 1.3E-11 73.0 16.2 130 280-412 14-145 (166)
134 1a17_A Serine/threonine protei 98.8 4.8E-07 1.6E-11 72.4 16.5 129 244-376 14-144 (166)
135 2e2e_A Formate-dependent nitri 98.8 1.3E-07 4.3E-12 77.0 12.9 119 291-412 22-143 (177)
136 3gw4_A Uncharacterized protein 98.7 2.6E-07 9E-12 76.8 15.1 121 219-341 4-134 (203)
137 2qfc_A PLCR protein; TPR, HTH, 98.7 1.2E-06 4.2E-11 77.6 20.2 168 245-412 77-265 (293)
138 4gcn_A Protein STI-1; structur 98.7 3.5E-07 1.2E-11 69.6 14.1 106 351-457 10-116 (127)
139 2c2l_A CHIP, carboxy terminus 98.7 5.2E-08 1.8E-12 85.8 10.7 195 206-412 3-198 (281)
140 1p5q_A FKBP52, FK506-binding p 98.7 4.1E-08 1.4E-12 88.9 9.8 132 279-412 147-293 (336)
141 2vgx_A Chaperone SYCD; alterna 98.7 9.6E-08 3.3E-12 75.0 10.8 98 351-456 23-121 (148)
142 1na0_A Designed protein CTPR3; 98.7 6.1E-07 2.1E-11 67.7 14.9 96 281-378 11-106 (125)
143 1p5q_A FKBP52, FK506-binding p 98.7 4.1E-08 1.4E-12 88.9 8.9 152 292-452 126-293 (336)
144 2e2e_A Formate-dependent nitri 98.7 3.6E-07 1.2E-11 74.2 13.6 120 219-343 22-144 (177)
145 2vgx_A Chaperone SYCD; alterna 98.7 1E-07 3.6E-12 74.7 9.8 100 313-414 20-119 (148)
146 2vyi_A SGTA protein; chaperone 98.7 5.8E-07 2E-11 68.4 13.9 113 351-470 14-127 (131)
147 2lni_A Stress-induced-phosphop 98.7 9.4E-07 3.2E-11 67.6 14.9 97 243-342 16-112 (133)
148 3upv_A Heat shock protein STI1 98.7 4.9E-07 1.7E-11 68.6 13.0 94 353-454 8-102 (126)
149 2vyi_A SGTA protein; chaperone 98.7 6.9E-07 2.4E-11 68.0 14.0 116 280-398 13-128 (131)
150 4f3v_A ESX-1 secretion system 98.6 1.7E-07 6E-12 80.6 11.0 187 116-309 18-238 (282)
151 1elw_A TPR1-domain of HOP; HOP 98.6 1.2E-06 4.2E-11 65.2 13.9 107 351-464 6-113 (118)
152 3upv_A Heat shock protein STI1 98.6 1.4E-06 4.7E-11 66.1 14.3 98 315-414 5-102 (126)
153 4f3v_A ESX-1 secretion system 98.6 3E-07 1E-11 79.1 11.5 131 318-456 106-240 (282)
154 2xcb_A PCRH, regulatory protei 98.6 9.5E-07 3.3E-11 68.7 13.2 94 317-412 21-114 (142)
155 3dss_A Geranylgeranyl transfer 98.6 2.2E-05 7.5E-10 69.6 23.2 218 255-484 41-304 (331)
156 2kck_A TPR repeat; tetratricop 98.6 1.3E-06 4.4E-11 64.4 13.1 101 348-456 5-109 (112)
157 2fbn_A 70 kDa peptidylprolyl i 98.6 9.2E-08 3.1E-12 79.4 7.1 128 352-485 41-187 (198)
158 4b4t_Q 26S proteasome regulato 98.6 2.5E-05 8.7E-10 73.4 24.6 200 215-414 12-246 (434)
159 2fbn_A 70 kDa peptidylprolyl i 98.6 1.8E-07 6E-12 77.7 8.6 149 252-404 13-176 (198)
160 3sz7_A HSC70 cochaperone (SGT) 98.6 1.2E-06 4.1E-11 70.1 13.0 97 314-412 11-107 (164)
161 4b4t_Q 26S proteasome regulato 98.5 6.7E-06 2.3E-10 77.4 20.1 203 249-452 10-244 (434)
162 4gcn_A Protein STI-1; structur 98.5 1.7E-06 5.7E-11 65.7 12.8 106 316-429 10-121 (127)
163 3q49_B STIP1 homology and U bo 98.5 3.6E-06 1.2E-10 64.7 14.9 102 312-415 7-108 (137)
164 2xcb_A PCRH, regulatory protei 98.5 1.7E-06 5.8E-11 67.3 12.7 99 351-456 20-118 (142)
165 1elw_A TPR1-domain of HOP; HOP 98.5 5.8E-06 2E-10 61.4 15.1 95 282-378 7-101 (118)
166 3ro3_A PINS homolog, G-protein 98.5 1.6E-06 5.6E-11 68.8 12.3 102 351-452 51-157 (164)
167 2hr2_A Hypothetical protein; a 98.5 5.6E-06 1.9E-10 64.2 14.2 114 318-432 15-150 (159)
168 1hxi_A PEX5, peroxisome target 98.5 1.3E-06 4.3E-11 65.8 10.4 97 352-456 20-117 (121)
169 1elr_A TPR2A-domain of HOP; HO 98.5 3.5E-06 1.2E-10 64.0 13.2 104 352-456 7-111 (131)
170 2dba_A Smooth muscle cell asso 98.4 4.7E-06 1.6E-10 65.0 13.4 97 351-456 30-131 (148)
171 1elr_A TPR2A-domain of HOP; HO 98.4 1.9E-06 6.4E-11 65.6 10.7 110 315-432 5-120 (131)
172 3sz7_A HSC70 cochaperone (SGT) 98.4 3.8E-06 1.3E-10 67.0 12.9 100 207-310 11-110 (164)
173 3q49_B STIP1 homology and U bo 98.4 8.7E-06 3E-10 62.5 13.7 98 242-342 8-105 (137)
174 2kck_A TPR repeat; tetratricop 98.4 3.9E-06 1.3E-10 61.7 11.0 95 282-378 9-106 (112)
175 1hxi_A PEX5, peroxisome target 98.4 3.6E-06 1.2E-10 63.2 10.8 94 317-412 20-113 (121)
176 2dba_A Smooth muscle cell asso 98.4 1.8E-05 6E-10 61.6 15.3 96 314-412 28-127 (148)
177 3ro3_A PINS homolog, G-protein 98.4 3.1E-06 1.1E-10 67.1 10.7 135 350-484 10-158 (164)
178 2xev_A YBGF; tetratricopeptide 98.4 1.3E-05 4.5E-10 60.7 13.8 91 320-412 8-104 (129)
179 1wao_1 Serine/threonine protei 98.3 2.6E-06 8.9E-11 81.0 11.5 88 252-342 15-102 (477)
180 3rkv_A Putative peptidylprolyl 98.3 3.2E-06 1.1E-10 67.4 10.1 65 385-456 64-129 (162)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 9.2E-07 3.1E-11 83.7 7.9 88 350-445 318-406 (457)
182 2xev_A YBGF; tetratricopeptide 98.3 2.8E-05 9.4E-10 58.9 14.2 94 355-456 8-108 (129)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 7.6E-06 2.6E-10 77.4 13.0 94 384-483 317-414 (457)
184 1wao_1 Serine/threonine protei 98.3 5.1E-06 1.7E-10 79.0 11.2 113 359-479 16-134 (477)
185 3rkv_A Putative peptidylprolyl 98.2 2.5E-05 8.5E-10 62.1 12.8 63 349-412 63-125 (162)
186 3k9i_A BH0479 protein; putativ 98.2 4.7E-06 1.6E-10 62.2 7.3 88 185-274 3-92 (117)
187 3k9i_A BH0479 protein; putativ 98.2 5.1E-06 1.7E-10 62.0 7.4 88 220-310 3-92 (117)
188 2hr2_A Hypothetical protein; a 98.1 2.7E-05 9.4E-10 60.3 11.2 106 351-456 13-134 (159)
189 1ihg_A Cyclophilin 40; ppiase 98.1 4.3E-05 1.5E-09 69.9 13.6 136 245-403 225-360 (370)
190 3n71_A Histone lysine methyltr 98.1 2.4E-05 8.1E-10 73.9 12.0 129 324-452 319-463 (490)
191 2if4_A ATFKBP42; FKBP-like, al 98.1 9.3E-06 3.2E-10 73.4 8.8 151 279-456 179-331 (338)
192 1dce_A Protein (RAB geranylger 98.1 0.00027 9.3E-09 68.4 19.5 168 295-471 45-240 (567)
193 1dce_A Protein (RAB geranylger 98.1 0.00014 4.6E-09 70.5 17.2 172 86-297 46-244 (567)
194 1ihg_A Cyclophilin 40; ppiase 98.1 4.5E-05 1.5E-09 69.7 13.2 139 281-446 225-363 (370)
195 2if4_A ATFKBP42; FKBP-like, al 98.0 1.3E-05 4.4E-10 72.5 8.6 145 314-484 179-328 (338)
196 3n71_A Histone lysine methyltr 98.0 3.6E-05 1.2E-09 72.7 10.6 125 288-412 318-463 (490)
197 2kat_A Uncharacterized protein 97.9 5.5E-05 1.9E-09 56.0 8.6 78 333-412 4-81 (115)
198 2l6j_A TPR repeat-containing p 97.9 6.7E-06 2.3E-10 60.4 3.4 62 350-412 5-66 (111)
199 2kat_A Uncharacterized protein 97.9 0.00013 4.4E-09 53.9 10.3 78 226-307 4-81 (115)
200 1zu2_A Mitochondrial import re 97.8 5.5E-05 1.9E-09 58.5 7.8 98 327-433 15-133 (158)
201 1zu2_A Mitochondrial import re 97.8 3.6E-05 1.2E-09 59.5 6.5 97 359-463 12-130 (158)
202 1na3_A Designed protein CTPR2; 97.8 0.00016 5.4E-09 50.6 9.5 83 383-471 8-91 (91)
203 1klx_A Cysteine rich protein B 97.8 0.00077 2.6E-08 51.6 13.8 111 329-455 10-128 (138)
204 2l6j_A TPR repeat-containing p 97.7 2.4E-05 8.3E-10 57.3 4.4 65 70-135 5-69 (111)
205 1klx_A Cysteine rich protein B 97.7 0.00086 2.9E-08 51.3 12.6 108 294-412 10-125 (138)
206 1na3_A Designed protein CTPR2; 97.7 0.00057 2E-08 47.6 10.7 62 245-308 11-72 (91)
207 3ma5_A Tetratricopeptide repea 97.7 0.00031 1E-08 50.3 9.3 64 348-412 6-69 (100)
208 3ma5_A Tetratricopeptide repea 97.6 0.00047 1.6E-08 49.3 9.5 65 242-308 6-70 (100)
209 3ly7_A Transcriptional activat 97.6 0.003 1E-07 56.3 15.4 74 346-428 274-347 (372)
210 3ly7_A Transcriptional activat 97.4 0.0032 1.1E-07 56.1 13.3 72 170-246 275-346 (372)
211 3qwp_A SET and MYND domain-con 97.3 0.0019 6.5E-08 60.0 11.3 96 357-452 295-399 (429)
212 2kc7_A BFR218_protein; tetratr 97.3 0.00055 1.9E-08 48.7 6.1 56 356-412 7-63 (99)
213 3qww_A SET and MYND domain-con 97.3 0.00091 3.1E-08 62.1 9.0 93 361-453 310-411 (433)
214 2kc7_A BFR218_protein; tetratr 97.1 0.0017 5.8E-08 46.1 7.7 59 321-380 7-66 (99)
215 3lvg_A Clathrin heavy chain 1; 97.1 0.00045 1.5E-08 62.9 5.2 249 28-298 49-323 (624)
216 3mkq_A Coatomer beta'-subunit; 97.1 0.0094 3.2E-07 60.9 15.5 28 206-233 680-707 (814)
217 3qwp_A SET and MYND domain-con 97.0 0.0027 9.4E-08 58.9 10.0 103 321-425 294-410 (429)
218 3qww_A SET and MYND domain-con 96.9 0.0034 1.2E-07 58.2 9.6 88 396-483 310-410 (433)
219 3bee_A Putative YFRE protein; 96.9 0.011 3.9E-07 41.2 9.5 65 347-412 4-71 (93)
220 2v5f_A Prolyl 4-hydroxylase su 96.7 0.026 8.9E-07 40.3 10.8 79 383-461 4-84 (104)
221 3bee_A Putative YFRE protein; 96.7 0.013 4.3E-07 41.0 8.5 66 102-167 4-73 (93)
222 1pc2_A Mitochondria fission pr 96.6 0.037 1.3E-06 42.3 11.3 83 367-456 16-103 (152)
223 1pc2_A Mitochondria fission pr 96.6 0.015 5.2E-07 44.4 9.0 81 330-412 14-99 (152)
224 3mkq_A Coatomer beta'-subunit; 96.5 0.2 7E-06 50.9 19.6 154 78-269 608-762 (814)
225 3lvg_A Clathrin heavy chain 1; 96.0 8E-06 2.8E-10 74.0 -13.4 113 70-195 55-167 (624)
226 4h7y_A Dual specificity protei 96.0 0.15 5.3E-06 38.4 11.4 113 277-392 11-136 (161)
227 2v5f_A Prolyl 4-hydroxylase su 96.0 0.069 2.3E-06 38.1 9.6 61 352-412 8-74 (104)
228 3mkq_B Coatomer subunit alpha; 96.0 0.087 3E-06 41.3 10.5 27 207-233 34-60 (177)
229 3u64_A Protein TP_0956; tetrat 95.8 0.041 1.4E-06 47.0 8.8 91 120-210 179-280 (301)
230 3mkq_B Coatomer subunit alpha; 95.8 0.5 1.7E-05 37.1 15.3 99 290-409 16-114 (177)
231 4ady_A RPN2, 26S proteasome re 95.7 2 6.9E-05 43.5 22.0 154 217-376 500-656 (963)
232 3u64_A Protein TP_0956; tetrat 95.7 0.09 3.1E-06 44.9 10.3 87 260-346 180-272 (301)
233 4ady_A RPN2, 26S proteasome re 95.7 2.2 7.5E-05 43.3 28.6 254 216-482 383-656 (963)
234 4h7y_A Dual specificity protei 95.6 0.25 8.6E-06 37.2 11.1 103 243-347 13-127 (161)
235 1nzn_A CGI-135 protein, fissio 95.4 0.38 1.3E-05 35.2 11.4 88 362-456 14-106 (126)
236 4b4t_P 26S proteasome regulato 95.2 2 7E-05 39.9 21.0 164 176-339 141-320 (445)
237 1wy6_A Hypothetical protein ST 94.9 0.81 2.8E-05 33.8 15.2 57 355-412 97-153 (172)
238 1wy6_A Hypothetical protein ST 94.8 0.82 2.8E-05 33.7 14.5 139 291-456 19-157 (172)
239 1nzn_A CGI-135 protein, fissio 94.8 0.11 3.7E-06 38.1 7.1 80 332-412 19-102 (126)
240 1qsa_A Protein (soluble lytic 94.8 3.3 0.00011 40.2 23.6 115 329-452 229-347 (618)
241 2ff4_A Probable regulatory pro 94.6 0.16 5.3E-06 46.5 9.3 79 353-432 175-253 (388)
242 1v54_E Cytochrome C oxidase po 94.1 0.95 3.3E-05 31.3 9.8 64 399-467 25-89 (109)
243 4gns_B Protein CSD3, chitin bi 94.0 1.2 4.1E-05 44.2 14.6 51 359-410 347-397 (754)
244 4b4t_P 26S proteasome regulato 93.8 4.2 0.00014 37.7 21.1 95 318-412 141-246 (445)
245 2ff4_A Probable regulatory pro 92.8 0.32 1.1E-05 44.3 8.0 129 68-211 111-249 (388)
246 4gns_B Protein CSD3, chitin bi 92.7 1 3.5E-05 44.6 11.7 53 322-375 345-397 (754)
247 2y69_E Cytochrome C oxidase su 92.0 2.4 8.1E-05 31.2 9.8 64 399-467 68-132 (152)
248 4fhn_B Nucleoporin NUP120; pro 91.2 3.8 0.00013 43.4 15.0 22 248-269 847-868 (1139)
249 3lpz_A GET4 (YOR164C homolog); 91.2 7.2 0.00025 34.2 22.3 168 140-342 38-215 (336)
250 2wpv_A GET4, UPF0363 protein Y 90.7 7.9 0.00027 33.7 21.7 181 113-341 22-215 (312)
251 4fhn_B Nucleoporin NUP120; pro 90.6 10 0.00035 40.2 17.6 52 109-163 817-868 (1139)
252 3o48_A Mitochondria fission 1 90.6 2.2 7.5E-05 31.4 8.7 73 64-136 35-110 (134)
253 3o48_A Mitochondria fission 1 89.6 4.9 0.00017 29.6 11.1 69 381-456 37-110 (134)
254 4b4t_R RPN7, 26S proteasome re 89.6 4.9 0.00017 37.1 12.6 98 280-377 132-236 (429)
255 3ffl_A Anaphase-promoting comp 89.4 3.4 0.00012 31.8 9.4 101 354-454 25-152 (167)
256 1v54_E Cytochrome C oxidase po 89.4 3.9 0.00013 28.3 10.3 62 223-287 26-87 (109)
257 1y8m_A FIS1; mitochondria, unk 88.8 5.9 0.0002 29.6 11.5 46 367-412 60-105 (144)
258 1zbp_A Hypothetical protein VP 88.5 2.1 7E-05 36.1 8.2 56 323-379 6-61 (273)
259 4b4t_R RPN7, 26S proteasome re 86.7 5.6 0.00019 36.7 11.0 97 316-412 133-236 (429)
260 1zbp_A Hypothetical protein VP 86.5 2.7 9.2E-05 35.4 7.8 59 77-136 5-63 (273)
261 2y69_E Cytochrome C oxidase su 86.5 8 0.00027 28.5 10.3 61 224-287 70-130 (152)
262 2p58_C Putative type III secre 86.3 6.4 0.00022 27.2 8.3 81 81-167 19-99 (116)
263 3txn_A 26S proteasome regulato 86.3 19 0.00065 32.6 23.1 132 208-341 20-166 (394)
264 2uwj_G Type III export protein 86.2 6.2 0.00021 27.2 7.9 81 81-167 18-98 (115)
265 4g8k_A 2-5A-dependent ribonucl 86.1 9.5 0.00033 33.6 12.1 19 111-129 63-81 (337)
266 1wdy_A 2-5A-dependent ribonucl 84.3 3.8 0.00013 34.9 8.4 19 111-129 43-61 (285)
267 1y8m_A FIS1; mitochondria, unk 82.8 13 0.00044 27.8 13.0 81 380-465 35-121 (144)
268 3ffl_A Anaphase-promoting comp 82.8 14 0.0005 28.4 10.4 61 248-308 25-92 (167)
269 3txn_A 26S proteasome regulato 80.4 33 0.0011 31.0 24.4 167 172-341 19-208 (394)
270 1n11_A Ankyrin; clathrin, BAND 78.1 11 0.00037 34.7 9.6 355 75-483 17-401 (437)
271 3eiq_C Programmed cell death p 77.5 13 0.00043 33.1 9.1 60 352-412 220-281 (358)
272 1wdy_A 2-5A-dependent ribonucl 77.4 9.4 0.00032 32.3 8.5 19 111-129 9-27 (285)
273 3eu9_A Huntingtin-interacting 77.3 7.7 0.00026 31.8 7.7 15 359-373 217-231 (240)
274 3esl_A Checkpoint serine/threo 76.4 28 0.00094 27.8 10.5 51 399-454 94-145 (202)
275 3eiq_C Programmed cell death p 73.9 39 0.0013 30.0 11.3 92 386-483 219-320 (358)
276 1k1a_A B-cell lymphoma 3-encod 73.8 16 0.00055 29.9 8.8 28 144-171 13-40 (241)
277 3kea_A K1L; tropism, ANK repea 73.4 34 0.0012 29.1 10.9 7 148-154 39-45 (285)
278 2uwj_G Type III export protein 73.3 19 0.00066 24.8 6.9 80 364-456 21-100 (115)
279 2p58_C Putative type III secre 73.3 20 0.00069 24.8 7.4 80 364-456 22-101 (116)
280 1n11_A Ankyrin; clathrin, BAND 72.8 52 0.0018 30.0 12.8 352 56-452 29-401 (437)
281 3hra_A Ankyrin repeat family p 69.9 18 0.00062 28.6 8.0 12 219-230 81-92 (201)
282 3e3v_A Regulatory protein RECX 68.8 30 0.001 27.0 8.5 76 33-111 32-107 (177)
283 2wpv_A GET4, UPF0363 protein Y 67.9 61 0.0021 28.1 23.8 167 107-307 36-216 (312)
284 4a1g_A Mitotic checkpoint seri 66.4 40 0.0014 25.5 9.3 47 403-454 84-131 (152)
285 2zu6_B Programmed cell death p 66.4 20 0.0007 31.0 7.7 60 427-486 169-233 (307)
286 3esl_A Checkpoint serine/threo 65.1 51 0.0018 26.3 10.4 54 259-312 95-148 (202)
287 1qsa_A Protein (soluble lytic 64.9 1E+02 0.0036 29.8 36.5 90 391-488 388-483 (618)
288 4b4t_S RPN3, 26S proteasome re 64.6 95 0.0032 29.2 15.7 62 280-343 232-299 (523)
289 1k1a_A B-cell lymphoma 3-encod 62.3 61 0.0021 26.2 10.3 52 77-128 14-67 (241)
290 2d2s_A Exocyst complex compone 62.2 42 0.0014 27.7 8.5 91 74-165 23-119 (235)
291 3eu9_A Huntingtin-interacting 61.0 28 0.00095 28.3 7.6 17 112-128 81-97 (240)
292 2wvi_A Mitotic checkpoint seri 60.9 54 0.0019 25.2 9.4 49 401-454 77-126 (164)
293 3ygs_P Procaspase 9; apoptosis 59.4 27 0.00093 24.0 5.9 63 91-157 26-88 (97)
294 1ug3_A EIF4GI, eukaryotic prot 58.9 27 0.00093 30.8 7.4 46 426-471 274-321 (339)
295 3lpz_A GET4 (YOR164C homolog); 58.8 94 0.0032 27.2 27.5 167 107-307 38-215 (336)
296 2nsz_A Programmed cell death p 57.8 38 0.0013 24.8 6.8 92 386-483 9-110 (129)
297 3kea_A K1L; tropism, ANK repea 57.0 23 0.0008 30.1 6.6 20 249-268 164-183 (285)
298 3jxi_A Vanilloid receptor-rela 55.1 15 0.00051 30.7 4.9 24 148-171 13-36 (260)
299 2ion_A PDCD4, programmed cell 53.7 41 0.0014 25.5 6.6 92 386-483 11-112 (152)
300 3jxi_A Vanilloid receptor-rela 50.1 57 0.002 27.0 7.9 23 111-133 9-31 (260)
301 4b4t_S RPN3, 26S proteasome re 50.1 1.7E+02 0.0057 27.5 13.4 66 208-274 232-301 (523)
302 2fe3_A Peroxide operon regulat 49.3 71 0.0024 23.8 7.4 62 57-119 10-71 (145)
303 2fu4_A Ferric uptake regulatio 47.4 56 0.0019 21.3 7.1 62 58-120 6-68 (83)
304 3ltm_A Alpha-REP4; protein eng 47.3 1E+02 0.0036 24.3 19.1 17 103-119 32-48 (211)
305 3hra_A Ankyrin repeat family p 47.2 55 0.0019 25.6 7.0 12 255-266 14-25 (201)
306 1wty_A Hypothetical protein TT 46.9 76 0.0026 22.7 7.1 12 330-341 4-15 (119)
307 4aez_C MAD3, mitotic spindle c 46.6 80 0.0027 25.7 7.5 51 400-455 130-181 (223)
308 1bd8_A P19INK4D CDK4/6 inhibit 45.8 24 0.00082 26.4 4.4 17 113-129 8-24 (156)
309 4a1g_A Mitotic checkpoint seri 45.5 96 0.0033 23.4 10.7 50 333-382 84-134 (152)
310 2rfa_A Transient receptor pote 45.5 1.1E+02 0.0038 24.5 8.8 14 115-128 45-58 (232)
311 2keb_A DNA polymerase subunit 44.9 73 0.0025 21.8 6.1 61 368-430 28-88 (101)
312 3aji_A 26S proteasome non-ATPa 44.7 1.2E+02 0.0041 24.3 9.5 176 249-448 9-193 (231)
313 3bu8_A Telomeric repeat-bindin 44.3 1.2E+02 0.0041 24.4 7.8 51 85-136 88-146 (235)
314 3ljn_A Hypothetical protein; a 43.3 66 0.0022 28.4 7.5 14 254-267 181-194 (364)
315 2xig_A Ferric uptake regulatio 42.1 1.1E+02 0.0037 23.0 7.4 60 59-119 17-76 (150)
316 3eyy_A Putative iron uptake re 42.1 93 0.0032 23.2 7.0 61 58-120 8-68 (145)
317 2fe3_A Peroxide operon regulat 41.7 1.1E+02 0.0036 22.8 7.9 44 178-221 27-70 (145)
318 4ets_A Ferric uptake regulatio 41.6 73 0.0025 24.4 6.4 61 58-119 22-84 (162)
319 2etb_A Transient receptor pote 41.0 97 0.0033 25.4 7.9 11 327-337 231-241 (256)
320 4gq2_M Nucleoporin NUP120; bet 40.9 85 0.0029 32.4 8.6 106 355-471 816-950 (950)
321 4g8k_A 2-5A-dependent ribonucl 40.8 1.8E+02 0.006 25.1 11.9 58 110-172 28-87 (337)
322 2d2s_A Exocyst complex compone 40.6 1.5E+02 0.0052 24.3 9.9 90 249-341 24-118 (235)
323 2b7e_A PRE-mRNA processing pro 40.0 35 0.0012 20.8 3.3 29 154-182 3-31 (59)
324 1s6c_A KV4 potassium channel-i 39.2 1.3E+02 0.0043 23.0 9.4 25 208-232 157-181 (183)
325 2xig_A Ferric uptake regulatio 38.6 1.2E+02 0.0042 22.7 7.7 43 179-221 33-75 (150)
326 1mzb_A Ferric uptake regulatio 38.3 1.2E+02 0.004 22.3 7.5 33 187-219 33-65 (136)
327 3d5l_A Regulatory protein RECX 38.2 75 0.0026 25.9 6.3 43 37-79 79-121 (221)
328 3b7b_A Euchromatic histone-lys 37.5 92 0.0031 25.1 7.1 22 356-377 214-235 (237)
329 3eyy_A Putative iron uptake re 37.4 1.1E+02 0.0039 22.7 6.8 32 225-257 35-66 (145)
330 3ltm_A Alpha-REP4; protein eng 37.3 1.5E+02 0.0052 23.3 19.8 51 66-120 30-80 (211)
331 2w57_A Ferric uptake regulatio 37.0 1.3E+02 0.0044 22.6 7.1 34 223-257 33-66 (150)
332 2ijq_A Hypothetical protein; s 36.9 1.4E+02 0.0048 22.8 7.9 53 255-308 44-104 (161)
333 2pnn_A Transient receptor pote 36.2 83 0.0028 26.2 6.7 18 184-201 22-39 (273)
334 3t5v_B Nuclear mRNA export pro 36.0 2.1E+02 0.0072 26.4 9.5 63 316-378 178-249 (455)
335 3dfg_A Xcrecx, regulatory prot 35.8 1.5E+02 0.005 22.7 8.1 28 39-66 37-64 (162)
336 1mzb_A Ferric uptake regulatio 35.5 1.3E+02 0.0044 22.0 6.9 60 60-120 9-69 (136)
337 4b4t_O 26S proteasome regulato 35.2 2.5E+02 0.0085 25.2 9.9 21 320-340 82-102 (393)
338 1jog_A Hypothetical protein HI 35.0 1.1E+02 0.0039 22.8 6.4 20 424-443 77-96 (146)
339 1rw2_A ATP-dependent DNA helic 34.4 1E+02 0.0035 23.3 5.9 47 440-486 74-125 (152)
340 2w57_A Ferric uptake regulatio 34.3 1.2E+02 0.0042 22.7 6.6 62 58-120 6-68 (150)
341 2zu6_B Programmed cell death p 33.9 2.3E+02 0.0079 24.4 13.8 25 210-234 6-30 (307)
342 1oyz_A Hypothetical protein YI 33.7 2.1E+02 0.0071 23.8 20.4 227 241-489 35-268 (280)
343 4gq2_M Nucleoporin NUP120; bet 33.3 2.5E+02 0.0085 29.0 10.6 48 316-363 899-950 (950)
344 2wvi_A Mitotic checkpoint seri 32.5 1.7E+02 0.0058 22.5 11.4 50 333-382 79-129 (164)
345 2pnn_A Transient receptor pote 32.3 1.8E+02 0.006 24.1 8.2 53 145-197 18-79 (273)
346 3b7b_A Euchromatic histone-lys 31.5 1.4E+02 0.0046 24.0 7.2 16 326-341 219-234 (237)
347 2ve8_A FTSK, DNA translocase F 31.2 32 0.0011 22.1 2.3 27 460-486 26-53 (73)
348 2o03_A Probable zinc uptake re 31.1 84 0.0029 22.9 5.1 47 74-120 15-61 (131)
349 2ijq_A Hypothetical protein; s 31.1 1.8E+02 0.0061 22.3 7.2 56 359-414 42-105 (161)
350 3aji_A 26S proteasome non-ATPa 31.1 1.5E+02 0.0052 23.6 7.4 14 253-266 146-159 (231)
351 4ets_A Ferric uptake regulatio 30.5 1.8E+02 0.0061 22.1 8.0 47 282-328 35-83 (162)
352 2jul_A Calsenilin; EF-hand, ca 30.1 2.3E+02 0.0079 23.3 8.4 150 47-198 87-255 (256)
353 3bqo_A Telomeric repeat-bindin 29.6 41 0.0014 26.6 3.1 69 85-153 94-166 (211)
354 2yru_A Steroid receptor RNA ac 28.7 1.2E+02 0.0039 21.8 5.1 16 116-131 73-88 (118)
355 3mwm_A ZUR, putative metal upt 28.6 89 0.003 23.1 4.8 48 73-120 17-64 (139)
356 3v31_A Ankyrin repeat family A 28.4 1.8E+02 0.0063 21.6 8.0 16 114-129 10-25 (167)
357 3lxu_X Tripeptidyl-peptidase 2 28.1 1.8E+02 0.0062 31.1 8.4 83 400-488 1265-1349(1354)
358 2rg8_A Programmed cell death p 27.8 1.4E+02 0.0047 22.9 5.9 25 352-376 13-37 (165)
359 2o03_A Probable zinc uptake re 27.2 1.5E+02 0.0052 21.5 5.9 17 186-202 24-40 (131)
360 2etb_A Transient receptor pote 27.2 2.5E+02 0.0086 22.8 11.5 56 144-200 6-71 (256)
361 2crb_A Nuclear receptor bindin 27.2 1.5E+02 0.0051 20.1 5.3 27 386-412 17-43 (97)
362 1krq_A Ferritin; H-chain like 26.9 2.1E+02 0.0072 21.8 8.4 44 427-471 101-145 (167)
363 2jul_A Calsenilin; EF-hand, ca 26.4 2.7E+02 0.0092 22.9 9.2 128 102-233 109-255 (256)
364 3f3f_C Nucleoporin NUP85; stru 26.3 2.2E+02 0.0076 27.0 7.9 86 72-158 482-570 (570)
365 2ion_A PDCD4, programmed cell 26.2 2.1E+02 0.0072 21.5 9.5 24 353-376 13-36 (152)
366 1q2z_A ATP-dependent DNA helic 26.2 81 0.0028 22.7 4.0 49 439-487 42-95 (120)
367 1bpo_A Protein (clathrin); cla 26.0 3.7E+02 0.013 24.9 8.9 134 91-233 348-482 (494)
368 2fu4_A Ferric uptake regulatio 25.7 1.4E+02 0.0047 19.3 7.3 58 163-221 8-66 (83)
369 3mwm_A ZUR, putative metal upt 25.3 1.4E+02 0.0047 22.0 5.4 14 188-201 29-42 (139)
370 3utm_A Tankyrase-1; tankyrase, 25.1 3.2E+02 0.011 23.3 13.2 118 76-206 28-151 (351)
371 3ljn_A Hypothetical protein; a 25.1 3.4E+02 0.012 23.6 10.7 17 433-449 250-266 (364)
372 2f6m_A Suppressor protein STP2 25.0 1.3E+02 0.0045 18.8 4.7 44 72-116 5-48 (65)
373 3i5p_A Nucleoporin NUP170; hel 24.5 4.4E+02 0.015 24.8 9.6 69 86-165 27-95 (525)
374 2rfa_A Transient receptor pote 24.5 2.7E+02 0.0091 22.1 10.1 27 355-381 157-183 (232)
375 3ygs_P Procaspase 9; apoptosis 23.4 1.4E+02 0.0046 20.4 4.6 36 364-403 52-87 (97)
376 3t8k_A Uncharacterized protein 23.0 2.6E+02 0.009 21.5 9.6 96 288-383 44-148 (186)
377 1wgl_A TOLL-interacting protei 22.7 27 0.00091 21.4 0.8 23 149-171 35-57 (59)
378 1oy3_D Transcription factor in 22.5 3.2E+02 0.011 22.4 8.6 16 113-128 15-30 (282)
379 3nr7_A DNA-binding protein H-N 21.9 88 0.003 20.9 3.2 18 472-489 59-76 (86)
380 3ltj_A Alpharep-4; protein eng 21.7 2.8E+02 0.0096 21.4 20.4 17 206-222 120-136 (201)
381 4aez_C MAD3, mitotic spindle c 21.6 3.3E+02 0.011 22.1 9.6 50 333-382 133-183 (223)
382 3ph0_C ASCG; type III secretio 21.4 1.4E+02 0.0049 17.9 3.9 17 83-99 20-36 (61)
383 3twr_A Tankyrase-2; ankyrin re 21.3 2.5E+02 0.0086 20.7 7.4 15 114-128 49-63 (165)
384 3bvf_A Ferritin; iron storage, 21.2 2.9E+02 0.0099 21.4 9.0 46 425-471 113-159 (181)
385 2y1l_E Darpin-8.4; hydrolase-i 20.8 2.2E+02 0.0074 21.3 6.1 15 114-128 21-35 (169)
386 2y1l_E Darpin-8.4; hydrolase-i 20.4 2.7E+02 0.0093 20.7 7.1 19 111-129 51-69 (169)
387 3twr_A Tankyrase-2; ankyrin re 20.3 2.6E+02 0.009 20.6 8.3 12 254-265 16-27 (165)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.1e-41 Score=332.07 Aligned_cols=436 Identities=10% Similarity=-0.031 Sum_probs=378.6
Q ss_pred CCcccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011236 34 VARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDL 113 (490)
Q Consensus 34 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 113 (490)
..|+.++..+.+.|++++++. +++++.. ..|+..++..++..|.+.|++++|..+|+.+... ++++.++..++.+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~-~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAF-VGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH-HHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCchHHHH-HHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHH
Confidence 447888899999999888887 7787773 4568889999999999999999999999988654 5688899999999
Q ss_pred HHhhcCHHHHHHHHHHccccC-----------------CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHH
Q 011236 114 IGKVRGLESAETYFNSLNDED-----------------KVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYN 176 (490)
Q Consensus 114 ~~~~~~~~~A~~~~~~~~~~~-----------------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 176 (490)
|.+.|++++|.++|+++.... ++..+|+.++.+|.+.|++++|+++|++|.+.++. +...+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHH
Confidence 999999999999999543322 24788999999999999999999999999887533 333333
Q ss_pred HH--------------------------------------HHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 011236 177 GI--------------------------------------MCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYG 218 (490)
Q Consensus 177 ~l--------------------------------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 218 (490)
.+ +..|.+.|++++|.++|+++.+. +++..++..++.+|.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 22 44556778889999999998765 588999999999999
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHH
Q 011236 219 ARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEM 298 (490)
Q Consensus 219 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 298 (490)
+.|++++|.++|+++. +.+. .+..+++.++.+|.+.|++++|..+++++....+ .+..+|+.++.+|.+.|++++|
T Consensus 317 ~~g~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 317 VRSRFIDVLAITTKIL-EIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP--EKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HTTCHHHHHHHHHHHH-HHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHH-HcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999998 5454 4778899999999999999999999999986554 6889999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011236 299 MKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKK 378 (490)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 378 (490)
.++|+++....+ .+..+|..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus 393 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999988765 67889999999999999999999999999986 3457889999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc--hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 379 GKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK--PSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 379 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
.+. +..+|+.++..|.+.|++++|.++|+++.+..++ .+..|+ ..+|..++.+|.+.|++++|.++++++.+.+|.
T Consensus 471 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 471 FQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK-TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred CCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc-cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 655 8899999999999999999999999999984431 155787 689999999999999999999999999999998
Q ss_pred -hhhhHHHHHHHHhcC--CcHHHHHHHHHhCC
Q 011236 457 -RNMYHALTEAHIRSG--QEVDGLLESMKADD 485 (490)
Q Consensus 457 -~~~~~~l~~~~~~~g--~~a~~~~~~m~~~~ 485 (490)
..+|..++.+|.+.| ++|.++++++.+..
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999 99999999998743
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-37 Score=308.81 Aligned_cols=403 Identities=11% Similarity=-0.001 Sum_probs=354.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHH
Q 011236 66 KISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLN 145 (490)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~ 145 (490)
.++...|+.++..+.+.|++++|+.+|+++.... |+..++..++.+|.+.|++++|..+|+.+....++..+++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 3678899999999999999999999999999654 57788899999999999999999999999776678999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhc---------------CCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHH
Q 011236 146 CYVREGLVDESLSLMQKMKEM---------------GSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSY 210 (490)
Q Consensus 146 ~~~~~g~~~~a~~~~~~m~~~---------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 210 (490)
+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHH
Confidence 999999999999999953221 22345789999999999999999999999999885422 23333
Q ss_pred H--------------------------------------HHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 011236 211 R--------------------------------------ICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANY 252 (490)
Q Consensus 211 ~--------------------------------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 252 (490)
. .++..|.+.|++++|.++|+++. +. +++..+++.++.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN-GL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTST-TG--GGCHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhh-cC--CchHHHHHHHHHH
Confidence 2 23556778899999999999997 44 4889999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHH
Q 011236 253 YIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEE 332 (490)
Q Consensus 253 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 332 (490)
|.+.|++++|..+|+++....+ .+..+++.++.++.+.|++++|..+++.+....+ .+..++..++..|.+.|++++
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDP--YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT--TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCc--ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999998765 6888999999999999999999999999986654 778899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 333 AEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 333 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+.++. +..+|..++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999886 2346779999999999999999999999999987654 889999999999999999999999999998
Q ss_pred hhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhc------ccc--hhhhHHHHHHHHhcC--CcHHHHHHHHH
Q 011236 413 VHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIK------VQK--RNMYHALTEAHIRSG--QEVDGLLESMK 482 (490)
Q Consensus 413 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~--~~~~~~l~~~~~~~g--~~a~~~~~~m~ 482 (490)
.. ..+..+|..++..|.+.|++++|.++|+++.+. .|. ..+|..++.+|.+.| ++|.++++++.
T Consensus 470 ~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 470 LF------QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HC------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hC------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 32 245789999999999999999999999999887 444 578999999999999 99999999998
Q ss_pred hCC
Q 011236 483 ADD 485 (490)
Q Consensus 483 ~~~ 485 (490)
+.+
T Consensus 544 ~~~ 546 (597)
T 2xpi_A 544 LLS 546 (597)
T ss_dssp HHS
T ss_pred HhC
Confidence 765
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=8.4e-31 Score=245.55 Aligned_cols=380 Identities=11% Similarity=0.003 Sum_probs=334.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCCh
Q 011236 75 VIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLV 153 (490)
Q Consensus 75 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~ 153 (490)
+...+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++......| +..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3456678999999999999998876 45667777888889999999999999999988877 688999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 011236 154 DESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEM 233 (490)
Q Consensus 154 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 233 (490)
++|+..|+++.+..+. +..+|..+..++...|++++|.+.|+++.+.+. .+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999987533 566799999999999999999999999988532 24456777888999999999999999999
Q ss_pred HhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCC
Q 011236 234 ESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQL 313 (490)
Q Consensus 234 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 313 (490)
. ...+ .+..+|..+..++...|++++|+..|+++....+ .+...|..+...+...|++++|...+++.....+ .+
T Consensus 162 l-~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~ 236 (388)
T 1w3b_A 162 I-ETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP--NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NH 236 (388)
T ss_dssp H-HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TC
T ss_pred H-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CC
Confidence 8 4443 5678899999999999999999999999998765 5788899999999999999999999998888765 56
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011236 314 NRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAG 393 (490)
Q Consensus 314 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 393 (490)
..++..+..++.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+..+. +..+|..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHH
Confidence 7889999999999999999999999999863 335678999999999999999999999999988643 88899999999
Q ss_pred HhccCCHHHHHHHHHHHHHhhhcCcCCCc-chhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC
Q 011236 394 YADKNNMEKAFECMKEALAVHEENKFWRP-KPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG 471 (490)
Q Consensus 394 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 471 (490)
+.+.|++++|...++++++ ..| +..++..+...+.+.|++++|...++++.+..|. ...|..+...+...|
T Consensus 315 ~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALE-------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTT-------SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 9999999999999999987 334 4578999999999999999999999999999998 999999998887654
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.2e-29 Score=234.76 Aligned_cols=360 Identities=13% Similarity=0.060 Sum_probs=319.3
Q ss_pred HHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCc
Q 011236 110 QLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQH 188 (490)
Q Consensus 110 l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 188 (490)
+...+.+.|++++|.+.++.+....| +...+..+...+.+.|++++|...++......+ .+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 34567789999999999999988888 467788888899999999999999999888753 4788999999999999999
Q ss_pred CcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011236 189 EKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKK 268 (490)
Q Consensus 189 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 268 (490)
++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++. +.++ .+...+..+...+...|++++|.+.|++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSAL-QYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH-HHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999998853 2345679999999999999999999999998 5443 4466777889999999999999999999
Q ss_pred HhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 011236 269 CEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYD 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 348 (490)
+....+ .+..+|..+...+...|++++|...|+++....+ .+...+..+...+...|++++|...+++..+.. +.+
T Consensus 161 al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 161 AIETQP--NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 988665 5788999999999999999999999999988776 667889999999999999999999999998863 335
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHH
Q 011236 349 FRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVS 428 (490)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~ 428 (490)
..++..+...|.+.|++++|...|+++.+.++. +..+|..+...+.+.|++++|.+.|+++++.. +.+..++.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~ 309 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC------PTHADSLN 309 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC------TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------cccHHHHH
Confidence 678899999999999999999999999998654 67889999999999999999999999999832 34568899
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHHHhC
Q 011236 429 SILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESMKAD 484 (490)
Q Consensus 429 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m~~~ 484 (490)
.+...+...|++++|...++++.+..|. ...+..++..|.+.| ++|...++++.+.
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998 999999999999999 9999999999874
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=4.6e-31 Score=251.23 Aligned_cols=212 Identities=11% Similarity=0.120 Sum_probs=104.5
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011236 191 IPDVLLDMKENGVPPDN-FSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKC 269 (490)
Q Consensus 191 a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 269 (490)
+..+.+++.+.+..+.+ ..++.+|++|++.|++++|.++|++|. +.|+.||..+||+||.+|++.+..+++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~-~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEAR-RNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 34444555555444332 235555666666666666666666666 556666666666666666554431000
Q ss_pred hhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 011236 270 EDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 349 (490)
...+.+++|.++|++|...+..||..||+++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 81 --------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~ 140 (501)
T 4g26_A 81 --------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL 140 (501)
T ss_dssp --------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred --------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Confidence 001113445555555555555555555555555555555555555555555555555555
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHH
Q 011236 350 RVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSS 429 (490)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 429 (490)
.+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|+.++|.++|++|.+ .|..|+..||+.
T Consensus 141 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~-----~g~~ps~~T~~~ 215 (501)
T 4g26_A 141 RSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD-----LVRQVSKSTFDM 215 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HTSSBCHHHHHH
T ss_pred ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-----hCCCcCHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555555555 455555555555
Q ss_pred HHHHHH
Q 011236 430 ILDWLG 435 (490)
Q Consensus 430 l~~~~~ 435 (490)
++..|.
T Consensus 216 l~~~F~ 221 (501)
T 4g26_A 216 IEEWFK 221 (501)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555444
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=3.6e-31 Score=251.95 Aligned_cols=206 Identities=12% Similarity=0.082 Sum_probs=134.6
Q ss_pred hHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------h
Q 011236 154 DESLSLMQKMKEMGSFGSAL-NYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSE---------L 223 (490)
Q Consensus 154 ~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~ 223 (490)
..+..+.+++.+.+..+.+. .++.+|++|++.|++++|+++|++|.+.|++||..||++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 44566777888887765543 5889999999999999999999999999999999999999999998765 4
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 011236 224 SSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWG 303 (490)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 303 (490)
+.|.++|++|. ..|+.||..||+++|.+|++.|++++|.++|++|...+.. ||..+|+.+|.+|++.|++++|.++|+
T Consensus 87 ~~A~~lf~~M~-~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~-Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 87 SRGFDIFKQMI-VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ-PRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CccceehHHHHHHHHCCCHHHHHHHHH
Confidence 55666666666 5666666666666666666666666666666666666655 666666666666666666666666666
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh
Q 011236 304 LQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQ 361 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (490)
+|...+..||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666666666655554
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-25 Score=217.54 Aligned_cols=405 Identities=10% Similarity=0.000 Sum_probs=235.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHH
Q 011236 69 ELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCY 147 (490)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~ 147 (490)
...+......+.+.|++++|+..|+++.+.. |++..+..+..++...|++++|...|+.+...+| +..+|..+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 4556777788889999999999999999886 5788888899999999999999999999988887 577899999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcC-----------------------------------cHH
Q 011236 148 VREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHE-----------------------------------KIP 192 (490)
Q Consensus 148 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-----------------------------------~a~ 192 (490)
.+.|++++|...|+++...+.. +......++..+....... ...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 9999999999999999887542 3333322222222111100 000
Q ss_pred HHHHHHHHCCCC--------C-CHHHHHHHHHHHh---ccCChHHHHHHHHHHHhC-----C--CC------CCCHHHHH
Q 011236 193 DVLLDMKENGVP--------P-DNFSYRICINSYG---ARSELSSMENVLQEMESQ-----S--HI------SMDWGTYS 247 (490)
Q Consensus 193 ~~~~~m~~~~~~--------p-~~~~~~~li~~~~---~~g~~~~a~~~~~~~~~~-----~--~~------~~~~~~~~ 247 (490)
.+...+...... | +...+......+. +.|++++|..+|+++. . . .. +.+..++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA-RLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH-HHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH-HHhhhhhccCccccccChHHHHHHH
Confidence 110000000000 0 1222222222222 2556666666666555 2 1 10 11234445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Q 011236 248 TVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKI 327 (490)
Q Consensus 248 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 327 (490)
.+...+...|++++|...|+++....+ . ..++..+..++...|++++|...++......+ .+...+..+...+...
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~--~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFP--R-VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCC--C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc--c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHh
Confidence 555556666666666666666555432 2 55555556666666666666666665554433 3445555566666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 011236 328 GELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECM 407 (490)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 407 (490)
|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+..+. +..+|..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666666655542 224445555555666666666666666666554332 4455555666666666666666666
Q ss_pred HHHHHhhhcCcCCCcchhhHHHHHHHHHc---CCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHH
Q 011236 408 KEALAVHEENKFWRPKPSLVSSILDWLGD---NRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESM 481 (490)
Q Consensus 408 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m 481 (490)
+++....+......-....+..+...+.. .|++++|...++++.+..|. ...+..++..|.+.| ++|...+++.
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66655332111111112255555555555 56666666666666655555 555666666666666 5566666555
Q ss_pred Hh
Q 011236 482 KA 483 (490)
Q Consensus 482 ~~ 483 (490)
.+
T Consensus 476 ~~ 477 (514)
T 2gw1_A 476 AD 477 (514)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=5.3e-25 Score=210.40 Aligned_cols=366 Identities=11% Similarity=0.019 Sum_probs=241.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHH
Q 011236 66 KISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALL 144 (490)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li 144 (490)
+.+...+..+...+.+.|++++|+++|+.+.+.. +.++..+..+..++...|++++|...|+.+...+| +..+|..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3455566666666666666666666666666554 34555666666666666666666666666666555 355666666
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 011236 145 NCYVREGLVDESLSLMQKMKEMGSFGSA---LNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARS 221 (490)
Q Consensus 145 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 221 (490)
..|.+.|++++|...|+++.+.+.. +. ..+..+...+.. ..+..+...+...|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcC
Confidence 6666666666666666666654321 22 344444333110 11222344566777
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHH
Q 011236 222 ELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKF 301 (490)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 301 (490)
++++|...|+++. .... .+..++..++.+|...|++++|+..|+++....+ .+..++..+..+|...|++++|...
T Consensus 158 ~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 158 DYTAAIAFLDKIL-EVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKN--DNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp CHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC--SCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHH-HhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888887776 4333 4667777777888888888888888887777655 5677777888888888888888888
Q ss_pred HHHHHHhcCCCChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCC-----chhHHHHHHHHHhcCC
Q 011236 302 WGLQKIKCKKQLNRDYITM------------LGSLVKIGELEEAEKMLEEWELSCYCYD-----FRVPNIILLGYSQKGM 364 (490)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~ 364 (490)
|+.+....+ .+...+..+ ...+.+.|++++|...++++.+. .|+ ...+..+...+.+.|+
T Consensus 234 ~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 234 VRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCC
Confidence 887776544 333444333 77888888888888888888875 333 3367778888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHH-----------
Q 011236 365 IEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILD----------- 432 (490)
Q Consensus 365 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~----------- 432 (490)
+++|...++++.+..+. +..+|..+..+|...|++++|...++++++ +.|+. ..+..+..
T Consensus 311 ~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~~ 382 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQE-------HNENDQQIREGLEKAQRLLKQSQKR 382 (450)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TSSSCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCcchHHHHHHHHHHHHHhhcccch
Confidence 99998888888876533 678888888888888899999988888887 34544 44444442
Q ss_pred -HHHcCC-----CHHHHHHHHHH-HHhcccc-----------hhhhHHHHHHHHhcC
Q 011236 433 -WLGDNR-----DVEEVEAFVSS-LKIKVQK-----------RNMYHALTEAHIRSG 471 (490)
Q Consensus 433 -~~~~~g-----~~~~a~~~~~~-~~~~~~~-----------~~~~~~l~~~~~~~g 471 (490)
.|...| +.+++.+.+++ ..+..|+ ...|..+..+|...|
T Consensus 383 ~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~ 439 (450)
T 2y4t_A 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLS 439 (450)
T ss_dssp CSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhC
Confidence 233333 55677777775 4444443 226777777777777
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=4.4e-25 Score=211.00 Aligned_cols=377 Identities=11% Similarity=-0.016 Sum_probs=225.6
Q ss_pred CCCCcccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 011236 32 KPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQL 111 (490)
Q Consensus 32 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 111 (490)
++..+..+...+.+.|+.++++. +++++... .+.+...+..+...+...|++++|+..|+.+.+.+ +.+...+..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~-~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALS-QFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 45667788888999999998888 77777765 45578999999999999999999999999999987 46788899999
Q ss_pred HHHHhhcCHHHHHHHHHHccccCCC-h---hHHHHHHHH------------HHhcCChhHHHHHHHHHHhcCCCCCcchH
Q 011236 112 DLIGKVRGLESAETYFNSLNDEDKV-D---KLYGALLNC------------YVREGLVDESLSLMQKMKEMGSFGSALNY 175 (490)
Q Consensus 112 ~~~~~~~~~~~A~~~~~~~~~~~p~-~---~~~~~li~~------------~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 175 (490)
.++...|++++|...|+.+....|+ . .++..++.. +.+.|++++|+..|+++.+.... +..++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 9999999999999999999998875 4 677777554 66667777777777766665332 55566
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 011236 176 NGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYII 255 (490)
Q Consensus 176 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (490)
..+..++...|++++|.++|+++.+.. +.+..++..+..++...|++++|...|+++. .... .+...+..+...
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p-~~~~~~~~~~~~--- 254 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECL-KLDQ-DHKRCFAHYKQV--- 254 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHH---
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-ChHHHHHHHHHH---
Confidence 666666666666666666666665532 2345566666666666666666666666665 2222 223333222000
Q ss_pred cCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCC----hhhHHHHHHHHHhcCCHH
Q 011236 256 AGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQL----NRDYITMLGSLVKIGELE 331 (490)
Q Consensus 256 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 331 (490)
.....+..+...+...|++++|...|+.+....+. + ...+..+..++.+.|+++
T Consensus 255 ---------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 255 ---------------------KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHH
T ss_pred ---------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHH
Confidence 00000111144444455555555555544443321 1 123444455555555555
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH------------HHhccC-
Q 011236 332 EAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAA------------GYADKN- 398 (490)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~------------~~~~~~- 398 (490)
+|...++++.+. .+.+...|..+..+|...|++++|...++++.+..+. +...+..+.. .|...|
T Consensus 313 ~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 313 EAIRVCSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 555555555443 1223444555555555555555555555555544322 3333433331 233333
Q ss_pred ----CHHHHHHHHHH-HHHhhhcCcCCCc----chhhHHHHHHHHHcCCCHHH
Q 011236 399 ----NMEKAFECMKE-ALAVHEENKFWRP----KPSLVSSILDWLGDNRDVEE 442 (490)
Q Consensus 399 ----~~~~a~~~~~~-~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~ 442 (490)
+.+++.+.+++ ++..+|++..-.+ ....+..+..+|...+|.+.
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred CccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 56677878876 5553332211100 11355566666666655443
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=1.7e-24 Score=211.80 Aligned_cols=403 Identities=11% Similarity=0.042 Sum_probs=275.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHH
Q 011236 69 ELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCY 147 (490)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~ 147 (490)
...+..+...+.+.|++++|++.|+++.+.. +.++..+..+..++...|++++|.+.|+.+...+| +..+|..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3455666666677777777777777776665 45566666677777777777777777777766665 466666677777
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHC------CCCCCHH-------------
Q 011236 148 VREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKEN------GVPPDNF------------- 208 (490)
Q Consensus 148 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~------------- 208 (490)
...|++++|+..|+ ..... |+. .+..+..+...+....+...++++... ...|+..
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 77777777777775 22221 111 111122223333334455555555332 0111111
Q ss_pred -----------------HHHHHHHHHhc--------cCChHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHc
Q 011236 209 -----------------SYRICINSYGA--------RSELSSMENVLQEMESQSHISMD-------WGTYSTVANYYIIA 256 (490)
Q Consensus 209 -----------------~~~~li~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~ 256 (490)
....+...+.. .|++++|..+|+++. +... .+ ..++..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l-~~~p-~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL-SANT-VDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH-C--C-CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HHCC-CcchhhHHHHHHHHHHHHHHHhc
Confidence 12222222222 247888888888887 5443 22 23466667788888
Q ss_pred CCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011236 257 GLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKM 336 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 336 (490)
|++++|...|+++.... |+..++..+...+...|++++|...+++.....+ .+..++..+...+...|++++|...
T Consensus 257 ~~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH---PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TCHHHHHHHHHHHHHHC---CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 89999999998887754 4477788888888889999999999988877765 5677888888888889999999999
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhc
Q 011236 337 LEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEE 416 (490)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 416 (490)
++++.+.. +.+...+..+...|...|++++|...++++.+..+. +...+..+...+...|++++|...++++++..+.
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 98888763 335677888888888999999999999888887544 6678888888888999999999999988886654
Q ss_pred CcCCCcchhhHHHHHHHHHcC----------CCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHHHh
Q 011236 417 NKFWRPKPSLVSSILDWLGDN----------RDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESMKA 483 (490)
Q Consensus 417 ~~~~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m~~ 483 (490)
..........+......+... |++++|...++++.+..|. ...+..++..|.+.| ++|.+.+++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 433333334455555667777 8899999999998888888 888888999999888 888888888776
Q ss_pred CC
Q 011236 484 DD 485 (490)
Q Consensus 484 ~~ 485 (490)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 43
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.3e-25 Score=215.63 Aligned_cols=411 Identities=10% Similarity=-0.046 Sum_probs=326.4
Q ss_pred cccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011236 36 RNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIG 115 (490)
Q Consensus 36 ~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (490)
+......+.+.|++++++. .+++..... |+...+..+...+...|++++|++.++.+.+.+ +.+...+..+..++.
T Consensus 9 ~~~~g~~~~~~g~~~~A~~-~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIK-YYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHH-HHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHH-HHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 3344566777889888888 777777665 689999999999999999999999999999887 567788999999999
Q ss_pred hhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhc----------------------------
Q 011236 116 KVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEM---------------------------- 166 (490)
Q Consensus 116 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------------- 166 (490)
..|++++|...|+.+...+| +......++..+........+.+.+..+...
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 99999999999999988775 4444445554444433333333222111110
Q ss_pred -------CCC---------CCcchHHHHHHHHHh---cCCcCcHHHHHHHHHH-----CCCC--------CCHHHHHHHH
Q 011236 167 -------GSF---------GSALNYNGIMCLYTN---TGQHEKIPDVLLDMKE-----NGVP--------PDNFSYRICI 214 (490)
Q Consensus 167 -------~~~---------p~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~--------p~~~~~~~li 214 (490)
... .+...+..+...+.. .|++++|..+|+++.+ ..-. .+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 000 113334444444444 8999999999999987 3111 2345778888
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCC
Q 011236 215 NSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGN 294 (490)
Q Consensus 215 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 294 (490)
..+...|++++|...|+++. +.+. +..++..+..+|...|++++|...++++....+ .+..++..+...+...|+
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l-~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAI-ELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDS--NNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHH-HHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT--TCTHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHH-hhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc--CCHHHHHHHHHHHHHhCC
Confidence 99999999999999999998 5444 388889999999999999999999999988665 577889999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 011236 295 KDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKE 374 (490)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 374 (490)
+++|...+++.....+ .+...+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999998888765 56778999999999999999999999999886 344677889999999999999999999999
Q ss_pred HHHcCCC-CC----HHHHHHHHHHHhc---cCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHH
Q 011236 375 IVKKGKT-PT----PNSWSIIAAGYAD---KNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAF 446 (490)
Q Consensus 375 m~~~~~~-p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 446 (490)
+.+..+. ++ ..+|..+...+.. .|++++|...+++++... +.+..++..+...+.+.|++++|...
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD------PRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9875433 11 3489999999999 999999999999999832 23457888999999999999999999
Q ss_pred HHHHHhcccc-hhhhHHH
Q 011236 447 VSSLKIKVQK-RNMYHAL 463 (490)
Q Consensus 447 ~~~~~~~~~~-~~~~~~l 463 (490)
++++.+..|. ...+..+
T Consensus 472 ~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 472 FEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHH
Confidence 9999999998 6665554
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.2e-21 Score=191.48 Aligned_cols=403 Identities=11% Similarity=0.036 Sum_probs=300.9
Q ss_pred CCcccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011236 34 VARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDL 113 (490)
Q Consensus 34 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 113 (490)
..+..+...+.+.|+.++|+. .+++..... +.+...+..+...+...|++++|++.++++.+.+ +.++..+..+..+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~-~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIK-YYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHH-HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHH-HHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 346667778888999999998 777777653 4588999999999999999999999999999987 5678889999999
Q ss_pred HHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCC----------------
Q 011236 114 IGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMG------SFGS---------------- 171 (490)
Q Consensus 114 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~p~---------------- 171 (490)
+...|++++|...|+.+ ...|+. .+..+..+...+....|...++++.... ..|+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999999744 333332 2223444555555677777777774431 0111
Q ss_pred ----------cc----hHHHHHHHHHh--------cCCcCcHHHHHHHHHHCCCCCC-------HHHHHHHHHHHhccCC
Q 011236 172 ----------AL----NYNGIMCLYTN--------TGQHEKIPDVLLDMKENGVPPD-------NFSYRICINSYGARSE 222 (490)
Q Consensus 172 ----------~~----~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~-------~~~~~~li~~~~~~g~ 222 (490)
.. ....+...+.. .|++++|..+|+++.+.... + ..++..+...+...|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhccc
Confidence 01 12222222222 24788999999998875322 2 2346677778888999
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHH
Q 011236 223 LSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFW 302 (490)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 302 (490)
+++|...|+++. ... |+..++..+...+...|++++|...|+++....+ .+..++..+...+...|++++|...+
T Consensus 259 ~~~A~~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 259 LLDAQVLLQESI-NLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP--EYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp HHHHHHHHHHHH-HHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999988 433 4578888888999999999999999999887665 57788999999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-
Q 011236 303 GLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKT- 381 (490)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~- 381 (490)
++.....+ .+...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|...|+++.+..+.
T Consensus 334 ~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 98888765 55678888999999999999999999998886 3445678888899999999999999999988764321
Q ss_pred ----CCHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHH
Q 011236 382 ----PTPNSWSIIAAGYADK----------NNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFV 447 (490)
Q Consensus 382 ----p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 447 (490)
.....+......+... |++++|...|+++++.. +.+...+..+...+.+.|++++|...|
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD------PRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1223355566677777 99999999999998832 133477888889999999999999999
Q ss_pred HHHHhcccc
Q 011236 448 SSLKIKVQK 456 (490)
Q Consensus 448 ~~~~~~~~~ 456 (490)
+++.+..|.
T Consensus 486 ~~al~~~~~ 494 (537)
T 3fp2_A 486 EDSAILART 494 (537)
T ss_dssp HHHHHHC--
T ss_pred HHHHHhCCC
Confidence 999888776
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=5.5e-21 Score=176.54 Aligned_cols=303 Identities=9% Similarity=-0.034 Sum_probs=189.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHH
Q 011236 68 SELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNC 146 (490)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~ 146 (490)
++..+..+...+...|++++|++.|+.+.+.. +.++..+..+..++...|++++|...|+.+....| +..+|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45667778888888999999999999988876 45677888888888899999999999998888777 57788888888
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC--CCcchHHHH------------HHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHH
Q 011236 147 YVREGLVDESLSLMQKMKEMGSF--GSALNYNGI------------MCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRI 212 (490)
Q Consensus 147 ~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 212 (490)
+...|++++|...|+++.+.... .+...+..+ ...+...|++++|.++++++.+.. +.+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 89999999999999988876430 134444444 355566666666666666665542 234555666
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHH--------
Q 011236 213 CINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNH-------- 284 (490)
Q Consensus 213 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------- 284 (490)
+..++...|++++|...++++. .... .+..++..+...+...|++++|...|++.....+ .+...+..
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAAS-KLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ--DHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-TTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--cchHHHHHHHHHHHHH
Confidence 6666666666666666666665 4333 4555666666666666666666666666655443 23332221
Q ss_pred ----HHHHHHhcCChhHHHHHHHHHHHhcCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH
Q 011236 285 ----LISHYASLGNKDEMMKFWGLQKIKCKKQLN----RDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIIL 356 (490)
Q Consensus 285 ----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (490)
+...+...|++++|...++......+. +. ..+..+..++...|++++|...+++..+. .+.+..++..+.
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~ 313 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHH
Confidence 133455555555555555555544331 11 11333444555555555555555555543 122344455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 011236 357 LGYSQKGMIEKADAVLKEIVKK 378 (490)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~ 378 (490)
..|...|++++|...|+++.+.
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhc
Confidence 5555555555555555555554
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=1e-20 Score=174.80 Aligned_cols=327 Identities=12% Similarity=0.028 Sum_probs=194.6
Q ss_pred hhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 011236 104 VHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLY 182 (490)
Q Consensus 104 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 182 (490)
+..+..+...+...|++++|...|+.+....| +..+|..+...+...|++++|...++++.+.... +...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHH
Confidence 34455556666667777777777776666655 4566666666777777777777777766665332 445666666666
Q ss_pred HhcCCcCcHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCC
Q 011236 183 TNTGQHEKIPDVLLDMKENGVPP----DNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGL 258 (490)
Q Consensus 183 ~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 258 (490)
...|++++|...|+++.+. .| +...+..+..... ...+..+...+...|+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccC
Confidence 6666666666666666653 23 2222222210000 0001112445555666
Q ss_pred HHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011236 259 KEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLE 338 (490)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 338 (490)
+++|...++++....+ .+...+..+...+...|++++|...++......+ .+...+..+...+...|++++|...++
T Consensus 136 ~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 136 YTAAITFLDKILEVCV--WDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp HHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666555443 3455555556666666666666666665554433 444555556666666666666666666
Q ss_pred HHHhcCCCCCchhHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCCHHH
Q 011236 339 EWELSCYCYDFRVPN------------IILLGYSQKGMIEKADAVLKEIVKKGKTPTP----NSWSIIAAGYADKNNMEK 402 (490)
Q Consensus 339 ~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~ 402 (490)
+..+... .+...+. .+...+.+.|++++|...++++.+..+. +. ..+..+...+...|++++
T Consensus 213 ~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 213 ECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHH
Confidence 6555311 1222221 2255577778888888888877776433 23 224456677777888888
Q ss_pred HHHHHHHHHHhhhcCcCCCc-chhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHh
Q 011236 403 AFECMKEALAVHEENKFWRP-KPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIR 469 (490)
Q Consensus 403 a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~ 469 (490)
|...++++++. .| +..++..+...+...|++++|...++++.+..|. ...+..+..+...
T Consensus 291 A~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 291 AIRICSEVLQM-------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 88888887772 24 4567777777778888888888888888877777 6666666655543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=3e-20 Score=169.50 Aligned_cols=289 Identities=11% Similarity=-0.010 Sum_probs=149.1
Q ss_pred ChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 011236 103 SVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCL 181 (490)
Q Consensus 103 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 181 (490)
++..+......+...|++++|..+|+.+....| +..++..++..+...|++++|..+++++.+.... +...|..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHH
Confidence 333444444444444444444444444444443 2333444444444455555555555554444222 34444444444
Q ss_pred HHhcC-CcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHH
Q 011236 182 YTNTG-QHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKE 260 (490)
Q Consensus 182 ~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 260 (490)
+...| ++++|.+.|++..+... .+...+..+...+...|++++|...|+++. +... .+...+..+...|...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAA-QLMK-GCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHTT-TCSHHHHHHHHHHHHTTCHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHH-Hhcc-ccHHHHHHHHHHHHHHhhHH
Confidence 44444 45555555555444321 133444555555555555555555555554 2222 22334444555555555555
Q ss_pred HHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC--------CCChhhHHHHHHHHHhcCCHHH
Q 011236 261 KAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCK--------KQLNRDYITMLGSLVKIGELEE 332 (490)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~ 332 (490)
+|...++++....+ .+..++..+...+...|++++|...+++...... .....++..+...+...|++++
T Consensus 177 ~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSIAP--EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCC--CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 55555555555443 3445555555555566666666666555554331 1223456666666666666666
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCC
Q 011236 333 AEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGY-ADKNN 399 (490)
Q Consensus 333 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~ 399 (490)
|...+++..+.. +.+...+..+...|.+.|++++|...|++..+..+. +...+..+..++ ...|+
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCc
Confidence 666666666542 224556666666666777777777777666665433 555666666655 33444
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=1.8e-18 Score=168.40 Aligned_cols=404 Identities=10% Similarity=0.017 Sum_probs=299.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHH
Q 011236 66 KISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLN 145 (490)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~ 145 (490)
+-+...|..++. +.+.|+++.|..+|+.+.+.. |.+...+...+..+.+.|+++.|..+|++.....|+...|..++.
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 457889999998 478899999999999999886 577888999999999999999999999999998898888888775
Q ss_pred HH-HhcCChhHHHH----HHHHHHhc-CCCC-CcchHHHHHHHHHh---------cCCcCcHHHHHHHHHHCCCCCCHHH
Q 011236 146 CY-VREGLVDESLS----LMQKMKEM-GSFG-SALNYNGIMCLYTN---------TGQHEKIPDVLLDMKENGVPPDNFS 209 (490)
Q Consensus 146 ~~-~~~g~~~~a~~----~~~~m~~~-~~~p-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~~ 209 (490)
.. ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|++.++....+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 45678877765 77766543 5444 44567777766554 6889999999999988321111233
Q ss_pred HHHHHHHH-------------hccCChHHHHHHHHHHHh-----CCC---CCCC--------HHHHHHHHHHHHHc----
Q 011236 210 YRICINSY-------------GARSELSSMENVLQEMES-----QSH---ISMD--------WGTYSTVANYYIIA---- 256 (490)
Q Consensus 210 ~~~li~~~-------------~~~g~~~~a~~~~~~~~~-----~~~---~~~~--------~~~~~~li~~~~~~---- 256 (490)
|....... .+.+++..|..++.+... +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 43322211 134567778777765210 221 3343 23444444332222
Q ss_pred CCH----HHHHHHHHHHhhhhccCCChhhHHHHHHHHHh-------cCChh-------HHHHHHHHHHHhcCCCChhhHH
Q 011236 257 GLK----EKAIIYLKKCEDIVSKSKDALGYNHLISHYAS-------LGNKD-------EMMKFWGLQKIKCKKQLNRDYI 318 (490)
Q Consensus 257 ~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~ 318 (490)
++. +++..+|++.....+ .+...|...+..+.. .|+++ +|..+|++......+.+...|.
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~p--~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 222 477889999988765 578889888888875 79987 8999999887633324677889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-Hh
Q 011236 319 TMLGSLVKIGELEEAEKMLEEWELSCYCYDF--RVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAG-YA 395 (490)
Q Consensus 319 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~ 395 (490)
.++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|..+|++..+.... +...|...+.. +.
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHH
Confidence 9999999999999999999999985 4543 47888888899999999999999999886432 33344333322 34
Q ss_pred ccCCHHHHHHHHHHHHHhhhcCcCCCc-chhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-----hhhhHHHHHHHHh
Q 011236 396 DKNNMEKAFECMKEALAVHEENKFWRP-KPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-----RNMYHALTEAHIR 469 (490)
Q Consensus 396 ~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~l~~~~~~ 469 (490)
..|+.++|..+|+++++.. | +...|..++..+.+.|+.++|..+|++.....+. ...|...+.....
T Consensus 403 ~~~~~~~A~~~~e~al~~~-------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY-------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred HcCChhHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999833 4 4578899999999999999999999999987653 4488888998888
Q ss_pred cC--CcHHHHHHHHHh
Q 011236 470 SG--QEVDGLLESMKA 483 (490)
Q Consensus 470 ~g--~~a~~~~~~m~~ 483 (490)
.| +.+..+.+++.+
T Consensus 476 ~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 476 IGDLASILKVEKRRFT 491 (530)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 89 778888877764
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=7e-20 Score=167.10 Aligned_cols=290 Identities=10% Similarity=-0.048 Sum_probs=194.2
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHH
Q 011236 135 KVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICI 214 (490)
Q Consensus 135 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 214 (490)
.+...+..+...+...|++++|+++|+++....+. +...+..++..+...|++++|..+++++.+... .+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 35556777777788888888888888888776543 566666777777788888888888888776432 3556677777
Q ss_pred HHHhccC-ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcC
Q 011236 215 NSYGARS-ELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLG 293 (490)
Q Consensus 215 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 293 (490)
..+...| ++++|...|+++. +... .+...+..+..++...|++++|+..|+++....+ .+...+..+...+...|
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKAT-TLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK--GCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHH-TTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT--TCSHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhHHHHHHHHHHHH-HhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHh
Confidence 7777777 7888888888777 5443 4456677777777778888888888777776554 34556666777777777
Q ss_pred ChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------CCCchhHHHHHHHHHhcCCH
Q 011236 294 NKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCY--------CYDFRVPNIILLGYSQKGMI 365 (490)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~ 365 (490)
++++|...+++.....+ .+...+..+...+...|++++|...++++.+... +.+..++..+...|...|++
T Consensus 174 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 77777777776666554 4556667777777777777777777776665311 22345566666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc-hhhHHHHHHHH-HcCCC
Q 011236 366 EKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK-PSLVSSILDWL-GDNRD 439 (490)
Q Consensus 366 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~ 439 (490)
++|...+++..+..+. +...|..+...+...|++++|...++++++ +.|+ ...+..+..++ ...|+
T Consensus 253 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 253 AEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG-------LRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT-------TCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc-------cCCCchHHHHHHHHHHHHHhCc
Confidence 6666666666665433 555666666666666666666666666655 3343 34555555555 33444
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=5.8e-18 Score=163.12 Aligned_cols=368 Identities=11% Similarity=-0.004 Sum_probs=305.7
Q ss_pred CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----hcCHHHHHHHHHHccccCCChh
Q 011236 67 ISELELQRVIRQLRS----RKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGK----VRGLESAETYFNSLNDEDKVDK 138 (490)
Q Consensus 67 ~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~ 138 (490)
-+...+..+...+.. .+++++|+..|++..+.| ++..+..+...|.. .+++++|...|++....+ +..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~ 112 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-LPQ 112 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHH
Confidence 367888888888887 899999999999999886 57788888888888 899999999999988765 566
Q ss_pred HHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCCcCcHHHHHHHHHHCCCCCCHHHH
Q 011236 139 LYGALLNCYVR----EGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTN----TGQHEKIPDVLLDMKENGVPPDNFSY 210 (490)
Q Consensus 139 ~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~ 210 (490)
.+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 78888888888 889999999999998875 66788888888887 789999999999998864 67788
Q ss_pred HHHHHHHhc----cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhhccCCChhhH
Q 011236 211 RICINSYGA----RSELSSMENVLQEMESQSHISMDWGTYSTVANYYII----AGLKEKAIIYLKKCEDIVSKSKDALGY 282 (490)
Q Consensus 211 ~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 282 (490)
..+...|.. .++.++|.+.|++.. +.+ +...+..+...|.. .+++++|..+|++..+.+ +...+
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~ 258 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSA-TSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG----NSIAQ 258 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----CHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHH
Confidence 888888887 899999999999988 443 45677778888887 889999999999987643 45567
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCchhHH
Q 011236 283 NHLISHYAS----LGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKI-----GELEEAEKMLEEWELSCYCYDFRVPN 353 (490)
Q Consensus 283 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~ 353 (490)
..+...|.. .++.++|...|++.... .+...+..+...|... +++++|...+++..+.| +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 778888877 89999999999987655 3456777788888877 89999999999998874 345677
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHhhhcCcCCCcchhh
Q 011236 354 IILLGYSQKG---MIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD----KNNMEKAFECMKEALAVHEENKFWRPKPSL 426 (490)
Q Consensus 354 ~l~~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~ 426 (490)
.+...|...| ++++|...|++..+.| +...+..+...|.. .+++++|..+|+++.+ .+ +...
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~-----~~---~~~a 401 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE-----QG---LSAA 401 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----TT---CHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh-----CC---CHHH
Confidence 7888888766 7899999999999874 78889999999988 8999999999999988 33 4667
Q ss_pred HHHHHHHHHc----CCCHHHHHHHHHHHHhccc---c-hhhhHHHHHHHHh
Q 011236 427 VSSILDWLGD----NRDVEEVEAFVSSLKIKVQ---K-RNMYHALTEAHIR 469 (490)
Q Consensus 427 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~---~-~~~~~~l~~~~~~ 469 (490)
+..+...|.. .++.++|...|++..+.++ . +.....+...+..
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 8888888887 8999999999999999883 3 5555555444443
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=2.2e-20 Score=173.31 Aligned_cols=271 Identities=10% Similarity=-0.070 Sum_probs=179.0
Q ss_pred chHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 011236 173 LNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANY 252 (490)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 252 (490)
..+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...|+++. +.+. .+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~-~~~~~~~~l~~~ 141 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCL-ELKP-DNQTALMALAVS 141 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-hcCC-CCHHHHHHHHHH
Confidence 344455555555555555555555555432 1244455555555555555555555555554 3222 345555555555
Q ss_pred HHHcCCHHHHHHHHHHHhhhhccCCChhhHHH---------------HHHHHHhcCChhHHHHHHHHHHHhcCCC-Chhh
Q 011236 253 YIIAGLKEKAIIYLKKCEDIVSKSKDALGYNH---------------LISHYASLGNKDEMMKFWGLQKIKCKKQ-LNRD 316 (490)
Q Consensus 253 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~ 316 (490)
|...|++++|...|+++....+. +...+.. .+..+...|++++|...++++....+.. +..+
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPA--YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT--TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 66666666666666655544332 2222111 1223337888888888888887776522 5778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 011236 317 YITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD 396 (490)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 396 (490)
+..+...+...|++++|...++++.+. .+.+..++..+...|...|++++|...|+++.+..+. +..++..+...|.+
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 888888888889999999998888876 2335667888888899999999999999998887543 67788889999999
Q ss_pred cCCHHHHHHHHHHHHHhhhcCcCCC-----cchhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 011236 397 KNNMEKAFECMKEALAVHEENKFWR-----PKPSLVSSILDWLGDNRDVEEVEAFVSSL 450 (490)
Q Consensus 397 ~~~~~~a~~~~~~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 450 (490)
.|++++|...|+++++..|+..+.. ....+|..+..++...|++++|..++++.
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 9999999999999988654332211 11577888888899999999888887643
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=3.2e-20 Score=172.20 Aligned_cols=290 Identities=10% Similarity=-0.041 Sum_probs=208.9
Q ss_pred hcCHHHHHH-HHHHccccCC-----ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCc
Q 011236 117 VRGLESAET-YFNSLNDEDK-----VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEK 190 (490)
Q Consensus 117 ~~~~~~A~~-~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 190 (490)
.|+++.|.. .|++.....| +...+..+...+.+.|++++|+..|+++.+..+. +..+|..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHH
Confidence 466677776 6665544432 2345666677777777777777777777766433 55667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHH---------------HHHHHHH
Q 011236 191 IPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYST---------------VANYYII 255 (490)
Q Consensus 191 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------li~~~~~ 255 (490)
|...|+++.+.+ +.+..++..+..++...|++++|...|+++. .... .+...+.. .+..+..
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWL-RYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTST-TTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 777777776643 2356667777777777777777777777776 3332 11222211 2333348
Q ss_pred cCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011236 256 AGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEK 335 (490)
Q Consensus 256 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 335 (490)
.|++++|...|+++....+..++..++..+...+...|++++|...+++.....+ .+...+..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8999999999999988665312678899999999999999999999998888765 567889999999999999999999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHhccCCHHHHHH
Q 011236 336 MLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTP----------TPNSWSIIAAGYADKNNMEKAFE 405 (490)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p----------~~~~~~~l~~~~~~~~~~~~a~~ 405 (490)
.++++.+.. +.+...+..+...|.+.|++++|...|+++.+..+.. ...+|..+..+|...|++++|..
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999998863 3456788889999999999999999999988754331 16789999999999999999999
Q ss_pred HHHHHHH
Q 011236 406 CMKEALA 412 (490)
Q Consensus 406 ~~~~~~~ 412 (490)
++++.++
T Consensus 352 ~~~~~l~ 358 (368)
T 1fch_A 352 ADARDLS 358 (368)
T ss_dssp HHTTCHH
T ss_pred hHHHHHH
Confidence 8887665
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=3.5e-19 Score=165.03 Aligned_cols=272 Identities=9% Similarity=-0.083 Sum_probs=200.8
Q ss_pred CcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 011236 171 SALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVA 250 (490)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 250 (490)
+...|..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...|+++. +.+. .+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCL-ELQP-NNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCC-CCHHHHHHHH
Confidence 34446666666666666666666666666543 2355667777777777777777777777776 4333 4567777777
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhccCCChhh----------HHHHHHHHHhcCChhHHHHHHHHHHHhcCC-CChhhHHH
Q 011236 251 NYYIIAGLKEKAIIYLKKCEDIVSKSKDALG----------YNHLISHYASLGNKDEMMKFWGLQKIKCKK-QLNRDYIT 319 (490)
Q Consensus 251 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 319 (490)
.+|...|++++|+..|+++....+. +... +..+...+...|++++|...++++....+. ++..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPK--YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHH--HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCcc--chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 8888888888888888877665432 2222 334578888999999999999998888662 26788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 011236 320 MLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNN 399 (490)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 399 (490)
+...+...|++++|...++++.+. .+.+..+|..+..+|...|++++|...|+++.+..+. +..+|..+...|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence 999999999999999999999886 3446778999999999999999999999999987644 68889999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCcCCC------cchhhHHHHHHHHHcCCCHHHHHHHHHH
Q 011236 400 MEKAFECMKEALAVHEENKFWR------PKPSLVSSILDWLGDNRDVEEVEAFVSS 449 (490)
Q Consensus 400 ~~~a~~~~~~~~~~~~~~~~~~------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 449 (490)
+++|...|+++++..|+..+.. .+..+|..+..++...|+.+.+.++.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999765433311 1357888999999999999988877665
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=5.6e-20 Score=170.39 Aligned_cols=270 Identities=10% Similarity=-0.067 Sum_probs=163.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011236 138 KLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSY 217 (490)
Q Consensus 138 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 217 (490)
..|..+...+.+.|++++|+.+|+++.+..+. +..+|..+...+...|++++|...|+++.+.. +.+..++..+..++
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 33555555555666666666666665555332 45555556666666666666666666655532 12345555666666
Q ss_pred hccCChHHHHHHHHHHHhCCCCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHH
Q 011236 218 GARSELSSMENVLQEMESQSHIS---------MDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISH 288 (490)
Q Consensus 218 ~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 288 (490)
...|++++|...|+++. +.... .....+..+...+...|++++|+..|+++....+...+..++..+...
T Consensus 144 ~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWI-KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHTTCHHHHHHHHHHHH-HHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHH-HhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 66666666666666654 21110 011223345667777777777777777777655421256777777777
Q ss_pred HHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHH
Q 011236 289 YASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKA 368 (490)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 368 (490)
+...|++++|...|++.....+ .+..++..+..+|...|++++|...++++.+.. +.+..++..+...|.+.|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 7777777777777777776654 556677777777777777777877777777652 23456677777777788888888
Q ss_pred HHHHHHHHHcCCC-----------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 369 DAVLKEIVKKGKT-----------PTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 369 ~~~~~~m~~~~~~-----------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
...|+++.+..+. .+...|..+..++...|+.+.+..+.++...
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 8888777664321 1246678888888888888877776665433
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=2.3e-16 Score=151.91 Aligned_cols=364 Identities=11% Similarity=0.040 Sum_probs=302.2
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHh----hcCHHHHHHHHHHccccCCChhHHHHHHHHHHh----cCChhHHHH
Q 011236 87 HALQVSEWMSGQGLAFSVHDHAVQLDLIGK----VRGLESAETYFNSLNDEDKVDKLYGALLNCYVR----EGLVDESLS 158 (490)
Q Consensus 87 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~ 158 (490)
.+++.++...+.| ++.....+...|.. .++++.|...|+...+.+ +..++..|...|.. .++.++|..
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 3456666666665 67777888888877 899999999999988764 56788889999998 999999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHh----cCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHH
Q 011236 159 LMQKMKEMGSFGSALNYNGIMCLYTN----TGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGA----RSELSSMENVL 230 (490)
Q Consensus 159 ~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~ 230 (490)
.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999998875 66788888888888 789999999999998875 56677778888876 78999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHh----cCChhHHHHHH
Q 011236 231 QEMESQSHISMDWGTYSTVANYYII----AGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYAS----LGNKDEMMKFW 302 (490)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 302 (490)
++.. +.+ +...+..+...|.. .+++++|...|++..+. .+..++..+...|.. .+++++|..+|
T Consensus 175 ~~a~-~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 175 SKAA-EQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----GDELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHH-HCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9998 443 57788889999988 89999999999998764 355678888888876 88999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhc-----CCHHHHHHHHH
Q 011236 303 GLQKIKCKKQLNRDYITMLGSLVK----IGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQK-----GMIEKADAVLK 373 (490)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~ 373 (490)
++.... .+...+..+...|.. .++.++|...|++..+.| +...+..+...|... +++++|...|+
T Consensus 247 ~~a~~~---~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQ---GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTT---TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHC---CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 987765 345677777777877 899999999999998764 445677788888887 89999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHc----CCCHHHHHHH
Q 011236 374 EIVKKGKTPTPNSWSIIAAGYADKN---NMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGD----NRDVEEVEAF 446 (490)
Q Consensus 374 ~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 446 (490)
+..+.| +...+..+...|...| +.++|+++|+++.+ . .+...+..+...|.. .+++++|...
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-----~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-----K---GEKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-----T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-----C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 999875 5677888888888766 78999999999998 3 356778888888888 8999999999
Q ss_pred HHHHHhcccchhhhHHHHHHHHh----cC--CcHHHHHHHHHhCCC
Q 011236 447 VSSLKIKVQKRNMYHALTEAHIR----SG--QEVDGLLESMKADDI 486 (490)
Q Consensus 447 ~~~~~~~~~~~~~~~~l~~~~~~----~g--~~a~~~~~~m~~~~~ 486 (490)
|++..+.+. +..+..|...|.+ .+ ++|..+|++..+.+.
T Consensus 390 ~~~A~~~~~-~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 390 MRKAAEQGL-SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCC-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999988654 7778889999987 55 899999999887663
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=1.4e-18 Score=158.15 Aligned_cols=271 Identities=8% Similarity=-0.139 Sum_probs=171.6
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 011236 175 YNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYI 254 (490)
Q Consensus 175 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (490)
+..+...+...|++++|..+|+++.+... .+...+..+..++...|++++|...++++. +... .+..++..+..+|.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHAR-MLDP-KDIAVHAALAVSHT 100 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCc-CCHHHHHHHHHHHH
Confidence 33344444444444444444444443211 233444444445555555555555555544 2222 33444555555555
Q ss_pred HcCCHHHHHHHHHHHhhhhccCCChhhHHHH--------------HH-HHHhcCChhHHHHHHHHHHHhcCCCChhhHHH
Q 011236 255 IAGLKEKAIIYLKKCEDIVSKSKDALGYNHL--------------IS-HYASLGNKDEMMKFWGLQKIKCKKQLNRDYIT 319 (490)
Q Consensus 255 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 319 (490)
..|++++|...++++....+ .+...+..+ .. .+...|++++|...+++.....+ .+...+..
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 177 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQP--QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHAS 177 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTST--TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC--ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence 55555555555555544332 222222222 22 36677788888888887777665 56777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 011236 320 MLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNN 399 (490)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 399 (490)
+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...++++.+..+. +..+|..+...|...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcc
Confidence 8888888888888888888888762 335667888888888999999999999988887544 67788888999999999
Q ss_pred HHHHHHHHHHHHHhhhcCcCCCc------chhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 011236 400 MEKAFECMKEALAVHEENKFWRP------KPSLVSSILDWLGDNRDVEEVEAFVSSLKIK 453 (490)
Q Consensus 400 ~~~a~~~~~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 453 (490)
+++|.+.+++++...+...+... +...+..+..++.+.|++++|..++++..+.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 99999999998885432211111 4578888888999999999998888755443
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=7.1e-19 Score=160.16 Aligned_cols=280 Identities=10% Similarity=-0.029 Sum_probs=172.9
Q ss_pred hHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 011236 106 DHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTN 184 (490)
Q Consensus 106 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 184 (490)
.+......+...|++++|..+|+.+....| +..+|..+...+...|++++|...++++.+.... +..++..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHH
Confidence 344455555566666666666666655554 3555555666666666666666666666555322 44455555555555
Q ss_pred cCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHH-HH-HHHHcCCHHHH
Q 011236 185 TGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTV-AN-YYIIAGLKEKA 262 (490)
Q Consensus 185 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~~~~~~a 262 (490)
.|++++|.+.++++.+.... +...+..+...+ |+......+ .. .+...|++++|
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD-----------------------VDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC-------------------------------------------CCTTSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH-----------------------HHHHHHHHHHHhHHHHHcccHHHH
Confidence 55555555555555543211 111111110000 000001111 22 25666777778
Q ss_pred HHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011236 263 IIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWEL 342 (490)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (490)
...++++....+ .+..++..+...+...|++++|...+++.....+ .+...+..+...+...|++++|...++++.+
T Consensus 158 ~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 158 RTLLHAALEMNP--NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 877777776554 4667777777778888888888888877776654 5566777778888888888888888888777
Q ss_pred cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011236 343 SCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTP-----------TPNSWSIIAAGYADKNNMEKAFECMKEAL 411 (490)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (490)
.. +.+..++..+...|...|++++|...++++.+..+.. +..+|..+..++.+.|++++|..++++++
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 52 3355677778888888888888888888887754332 36678888888888888888888887766
Q ss_pred Hhh
Q 011236 412 AVH 414 (490)
Q Consensus 412 ~~~ 414 (490)
+..
T Consensus 314 ~~~ 316 (327)
T 3cv0_A 314 EPF 316 (327)
T ss_dssp HHH
T ss_pred Hhc
Confidence 533
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=1.5e-16 Score=154.95 Aligned_cols=379 Identities=9% Similarity=-0.015 Sum_probs=278.1
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 011236 92 SEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFG 170 (490)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 170 (490)
++..++.. |.+...+..++.. .+.|+++.|..+|+.+....| +...|..++..+.+.|++++|..+|+++.... |
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--L 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--C
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C
Confidence 44444544 4577788888874 778999999999999999888 67889999999999999999999999998874 5
Q ss_pred CcchHHHHHHHH-HhcCCcCcHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHhc---------cCChHHHHHHHHHHH
Q 011236 171 SALNYNGIMCLY-TNTGQHEKIPD----VLLDMKE-NGVPP-DNFSYRICINSYGA---------RSELSSMENVLQEME 234 (490)
Q Consensus 171 ~~~~~~~l~~~~-~~~~~~~~a~~----~~~~m~~-~~~~p-~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~ 234 (490)
++..|...+... ...|+.+.|.+ +|+.... .|..| +...|...+..... .|+++.|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 777777777533 45688888776 6776654 35444 45677777766544 688999999999998
Q ss_pred hCCCCCCCHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHhh------hh---ccCCC--------hhhHHH
Q 011236 235 SQSHISMDWGTYSTVANYY-------------IIAGLKEKAIIYLKKCED------IV---SKSKD--------ALGYNH 284 (490)
Q Consensus 235 ~~~~~~~~~~~~~~li~~~-------------~~~~~~~~a~~~~~~~~~------~~---~~~~~--------~~~~~~ 284 (490)
+.........|....... ...++++.|..++..+.. .. .+ |+ ...|..
T Consensus 158 -~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~-p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 158 -VNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVP-PQNTPQEAQQVDMWKK 235 (530)
T ss_dssp -TSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC-CC--CCHHHHHHHHHH
T ss_pred -hchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCC-CCCChhHHHHHHHHHH
Confidence 521111123333222211 123567777777765321 10 11 22 245555
Q ss_pred HHHHHHhc----CCh----hHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHh
Q 011236 285 LISHYASL----GNK----DEMMKFWGLQKIKCKKQLNRDYITMLGSLVK-------IGELE-------EAEKMLEEWEL 342 (490)
Q Consensus 285 l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~ 342 (490)
.+...... ++. +++..+|++.....+ .+...|..++..+.+ .|+++ +|..++++..+
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 55443322 232 377889998888766 677888888888775 79987 89999999986
Q ss_pred cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCC
Q 011236 343 SCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTP-NSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWR 421 (490)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 421 (490)
.-.+.+...|..++..+.+.|++++|..+|+++++..+. +. ..|..++..+.+.|+.++|..+|+++++ ..
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-------~~ 386 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARE-------DA 386 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------CT
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHh-------cc
Confidence 323345778899999999999999999999999996432 33 5899999999999999999999999988 22
Q ss_pred cc-hhhHHHHHHH-HHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHHHhCC
Q 011236 422 PK-PSLVSSILDW-LGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESMKADD 485 (490)
Q Consensus 422 p~-~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m~~~~ 485 (490)
|+ ...+...... +...|+.++|..+|++..+..|. +..|..++..+.+.| ++|..+|++....+
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 33 2333332222 33689999999999999999998 999999999999999 89999999998764
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=7.4e-17 Score=154.87 Aligned_cols=400 Identities=13% Similarity=0.007 Sum_probs=253.4
Q ss_pred CCCCCChHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C---CCCChhhHHHHHHHH
Q 011236 47 GDPDVSLTPVLDQWVLE----GQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQ-----G---LAFSVHDHAVQLDLI 114 (490)
Q Consensus 47 ~~~~~a~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~ 114 (490)
++.+.++..+-+.+... +.......|+.+...+...|++++|++.|++..+. + .+....++..+..+|
T Consensus 25 ~~~~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y 104 (472)
T 4g1t_A 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVY 104 (472)
T ss_dssp TTTCCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHH
Confidence 34455555444433322 33444667899999999999999999999987652 1 123345677788888
Q ss_pred HhhcCHHHHHHHHHHcccc--------CC-ChhHHHHHHHHHHhc--CChhHHHHHHHHHHhcCCCCCcchHHHHHHH--
Q 011236 115 GKVRGLESAETYFNSLNDE--------DK-VDKLYGALLNCYVRE--GLVDESLSLMQKMKEMGSFGSALNYNGIMCL-- 181 (490)
Q Consensus 115 ~~~~~~~~A~~~~~~~~~~--------~p-~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-- 181 (490)
...|++++|...+++.... .+ ...++..+..++... +++++|+..|++..+..+. ++..+..+..+
T Consensus 105 ~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~ 183 (472)
T 4g1t_A 105 YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASY 183 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 9999999999988876542 12 345666666566554 4688999999998887543 45555555444
Q ss_pred -HHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc
Q 011236 182 -YTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGA----RSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIA 256 (490)
Q Consensus 182 -~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (490)
+...++.++|++.+++..+.+. .+..++..+...+.. .|++++|.+++++.. ..+. .+..++..+...|...
T Consensus 184 ~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al-~~~~-~~~~~~~~lg~~~~~~ 260 (472)
T 4g1t_A 184 RLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL-EKAP-GVTDVLRSAAKFYRRK 260 (472)
T ss_dssp HHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHH-HHCS-SCHHHHHHHHHHHHHT
T ss_pred HhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HhCc-cHHHHHHHHHHHHHHc
Confidence 3456778889999988877532 345555555544443 467788999998887 4444 5677788889999999
Q ss_pred CCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011236 257 GLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKM 336 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 336 (490)
|++++|+..+++..+..+ .+..++..+..+|...+....+ . . ...........+..+.|...
T Consensus 261 ~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~y~~~~~~~~~---------~-~------~~~~~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 261 DEPDKAIELLKKALEYIP--NNAYLHCQIGCCYRAKVFQVMN---------L-R------ENGMYGKRKLLELIGHAVAH 322 (472)
T ss_dssp TCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHHhhh---------H-H------HHHHHHHHHHHhhHHHHHHH
Confidence 999999999999887665 4667777777666432111000 0 0 00001111122346678888
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHHHHh
Q 011236 337 LEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPN--SWSIIAA-GYADKNNMEKAFECMKEALAV 413 (490)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~ 413 (490)
+++..+.. +.+...+..+...|...|++++|...|++..+..+.|... .+..+.. .+...|+.++|+..|+++++
T Consensus 323 ~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~- 400 (472)
T 4g1t_A 323 LKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK- 400 (472)
T ss_dssp HHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH-
T ss_pred HHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 88877763 3456678888899999999999999999988865443221 2333332 24567889999999999988
Q ss_pred hhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHHHhCC
Q 011236 414 HEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESMKADD 485 (490)
Q Consensus 414 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m~~~~ 485 (490)
+.|+...... ....+.+++++..+..|. +.+|..++..|...| ++|++.|++..+.|
T Consensus 401 ------i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 401 ------INQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp ------SCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred ------cCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4465533322 234456677777777888 889999999999998 88999998887654
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.8e-16 Score=152.20 Aligned_cols=387 Identities=10% Similarity=-0.076 Sum_probs=233.1
Q ss_pred CcccHHHhhccCCCCCCChHHHHHHHHH----c----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC------
Q 011236 35 ARNNLYSRISPLGDPDVSLTPVLDQWVL----E----GQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGL------ 100 (490)
Q Consensus 35 ~~~~l~~~l~~~~~~~~a~~~~~~~~~~----~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------ 100 (490)
.++.|-..+...|+.++|+. .+++-.+ . ..+....+|+.+...+...|++++|...+++..+...
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~-~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALE-CLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 35666677778899999888 5544332 1 1333567899999999999999999999998765311
Q ss_pred -CCChhhHHHHHHHHHhh--cCHHHHHHHHHHccccCC-ChhHHHHHHHH---HHhcCChhHHHHHHHHHHhcCCCCCcc
Q 011236 101 -AFSVHDHAVQLDLIGKV--RGLESAETYFNSLNDEDK-VDKLYGALLNC---YVREGLVDESLSLMQKMKEMGSFGSAL 173 (490)
Q Consensus 101 -~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~p-~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~p~~~ 173 (490)
...+.++.....++... +++++|+..|++....+| ++..+..+..+ +...++.++|++.+++..+..+. +..
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~ 210 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQY 210 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chH
Confidence 12344555555455544 468999999999999888 46666665555 34567889999999999887543 556
Q ss_pred hHHHHHHHHHh----cCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 011236 174 NYNGIMCLYTN----TGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTV 249 (490)
Q Consensus 174 ~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 249 (490)
++..+...+.. .+++++|.+++++..... +.+..++..+...+...|++++|...+++.. +..+ -+..++..+
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~l 287 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKAL-EYIP-NNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHST-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHH-HhCC-ChHHHHHHH
Confidence 66666655554 467889999999988754 3466788899999999999999999999998 5444 456777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 011236 250 ANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGE 329 (490)
Q Consensus 250 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 329 (490)
..+|...+....+. .. .. ........+..+.|...++......+ .+..++..+...+...|+
T Consensus 288 g~~y~~~~~~~~~~---------~~--~~------~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 288 GCCYRAKVFQVMNL---------RE--NG------MYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHC-----------------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhH---------HH--HH------HHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhcc
Confidence 77665422111100 00 00 00011112234567777776666554 555667777777777788
Q ss_pred HHHHHHHHHHHHhcCCCCCch--hHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 011236 330 LEEAEKMLEEWELSCYCYDFR--VPNIILL-GYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFEC 406 (490)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 406 (490)
+++|...|++..+....+... .+..+.. .+...|+.++|+..|++.++.. |+...... ....+..+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~ 418 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHH
Confidence 888887777777653322211 1222222 2345677788888887777653 33222211 12334455
Q ss_pred HHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhH
Q 011236 407 MKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYH 461 (490)
Q Consensus 407 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~ 461 (490)
++..+... +.+..+|..+...+...|++++|.+.|++..+.++. +..++
T Consensus 419 ~~~~l~~~------p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 419 AKMRLSKN------GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHC------C-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 55555521 233467777777777788888888888887777666 44443
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=6.1e-19 Score=160.17 Aligned_cols=237 Identities=9% Similarity=0.005 Sum_probs=55.6
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 011236 83 KRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQK 162 (490)
Q Consensus 83 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 162 (490)
|+.++|.++++++ +.+.++..+..++.+.|++++|++.|.+. +|...|..++..+...|++++|+..++.
T Consensus 17 ~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 17 GNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4445555555444 12234445555555555555555555332 2333444445555555555555554443
Q ss_pred HHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCC
Q 011236 163 MKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMD 242 (490)
Q Consensus 163 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 242 (490)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~-------- 149 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-------- 149 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT--------
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh--------
Confidence 3332 2234444445555555555444444442 1344455555555555555555555554441
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHH
Q 011236 243 WGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLG 322 (490)
Q Consensus 243 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 322 (490)
.|..++.++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|...... ....+.....++.
T Consensus 150 --n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~ 215 (449)
T 1b89_A 150 --NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELIN 215 (449)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHH
T ss_pred --hHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHH
Confidence 2444555555555555555555443 2334455555555555555555332221 1111122233444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh
Q 011236 323 SLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQ 361 (490)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (490)
.|.+.|++++|..+++...... +-....|+-|...|++
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 4555555555555555444321 2223344444444443
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=3.1e-18 Score=155.58 Aligned_cols=280 Identities=8% Similarity=-0.022 Sum_probs=130.3
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHH
Q 011236 46 LGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAET 125 (490)
Q Consensus 46 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 125 (490)
.|+.+++.. +.+++ +++..|..+..++.+.|++++|++.|.+. +++..+..++..+...|++++|+.
T Consensus 16 ~~~ld~A~~-fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 16 IGNLDRAYE-FAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHH-HHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 344555555 55544 34469999999999999999999999652 467788999999999999999999
Q ss_pred HHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCC
Q 011236 126 YFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPP 205 (490)
Q Consensus 126 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 205 (490)
+++...+..+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 83 yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 83 YLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 888777765677889999999999999999988885 367789999999999999999999999876
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHH
Q 011236 206 DNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHL 285 (490)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 285 (490)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...+
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~ad~l~~l 213 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEEL 213 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCHhhHHHH
Confidence 47889999999999999999999988 367889999999999999999966655432 222334468
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCC------CchhHHHHHH
Q 011236 286 ISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKI--GELEEAEKMLEEWELSCYCY------DFRVPNIILL 357 (490)
Q Consensus 286 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~ 357 (490)
+..|.+.|++++|..+++..+... +-....|+-+.-+|++- +++.+..+.|.. +.+++| +...|.-+..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHH
Confidence 889999999999999999777554 35566777777777654 344444444432 112233 5678889999
Q ss_pred HHHhcCCHHHHHH
Q 011236 358 GYSQKGMIEKADA 370 (490)
Q Consensus 358 ~~~~~g~~~~A~~ 370 (490)
.|...++++.|..
T Consensus 291 ly~~~~e~d~A~~ 303 (449)
T 1b89_A 291 LYDKYEEYDNAII 303 (449)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHhhchHHHHHH
Confidence 9999999998876
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=3.6e-17 Score=145.47 Aligned_cols=251 Identities=11% Similarity=-0.019 Sum_probs=137.3
Q ss_pred HHhhcCHHHHHHHHHHccccCCCh--hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcH
Q 011236 114 IGKVRGLESAETYFNSLNDEDKVD--KLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKI 191 (490)
Q Consensus 114 ~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 191 (490)
....|++..|+..++......|+. .....+.++|...|+++.|+..++. .-+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 344566666666666555544432 2344455666666666666654433 1234455555566666666666666
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 011236 192 PDVLLDMKENGVPP-DNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCE 270 (490)
Q Consensus 192 ~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 270 (490)
.+.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666665554333 333444445566666666666666643 2455566666666666666666666666665
Q ss_pred hhhccCCChhh--HHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 011236 271 DIVSKSKDALG--YNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYD 348 (490)
Q Consensus 271 ~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 348 (490)
...+ .+... ....+..+...|++++|..+|+++....+ .+...++.+..++.+.|++++|...++++.+.. +-+
T Consensus 158 ~~~p--~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 158 DQDE--DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHCT--TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhCc--CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 5432 11111 01122233334566666666666665544 455556666666666666666666666665542 224
Q ss_pred chhHHHHHHHHHhcCCHHH-HHHHHHHHHHcC
Q 011236 349 FRVPNIILLGYSQKGMIEK-ADAVLKEIVKKG 379 (490)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 379 (490)
..++..++..+...|+.++ +.++++++.+.+
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4455556666666666544 445666666554
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=1.8e-17 Score=147.50 Aligned_cols=277 Identities=8% Similarity=-0.036 Sum_probs=215.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhH
Q 011236 76 IRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDE 155 (490)
Q Consensus 76 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 155 (490)
++.....|+++.|+..++................+.+++...|+++.|+..++.. ..|+..++..+...+...|+.++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCcHHH
Confidence 3445578999999999887655432111345566789999999999999877552 23567788889999999999999
Q ss_pred HHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 011236 156 SLSLMQKMKEMGSFGS-ALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEME 234 (490)
Q Consensus 156 a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 234 (490)
|++.++++...+..|+ ...+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|.+.|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998775554 55567777899999999999999987 4678889999999999999999999999998
Q ss_pred hCCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCC
Q 011236 235 SQSHISMDWGTY---STVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKK 311 (490)
Q Consensus 235 ~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 311 (490)
+.+ |+.... ..++..+...|++++|..+|+++....+ .+...++.+..++.+.|++++|...|++.....+
T Consensus 158 -~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p- 231 (291)
T 3mkr_A 158 -DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS--PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS- 231 (291)
T ss_dssp -HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred -hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 443 443211 1233444455899999999999998755 6889999999999999999999999999988876
Q ss_pred CChhhHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 011236 312 QLNRDYITMLGSLVKIGELEE-AEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAV 371 (490)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (490)
.+..++..++..+...|+.++ +.++++++.+. .|+.. .+.+...+.+.++++..-
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~---~~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP---FIKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH---HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh---HHHHHHHHHHHHHHHHHH
Confidence 678889999999999999875 67899998885 44432 233445555555555443
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=2.9e-20 Score=182.04 Aligned_cols=156 Identities=16% Similarity=0.158 Sum_probs=123.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHh---cCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHH
Q 011236 137 DKLYGALLNCYVREGLVDESLSLMQKMKE---MGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRIC 213 (490)
Q Consensus 137 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 213 (490)
..+||+||++|++.|++++|.++|++|.+ .|+.||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45799999999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCh-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhc
Q 011236 214 INSYGARSEL-SSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASL 292 (490)
Q Consensus 214 i~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 292 (490)
|.++++.|+. ++|.++|++|. +.|+.||..+|+.++....+.+-++...++...+.......+...+...|.+.|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 9999999985 78899999999 889999999999888766554333333222222111111102245566677777665
Q ss_pred C
Q 011236 293 G 293 (490)
Q Consensus 293 ~ 293 (490)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 5
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=6.8e-15 Score=149.16 Aligned_cols=355 Identities=11% Similarity=0.082 Sum_probs=265.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHH
Q 011236 66 KISELELQRVIRQLRSRKRFKHALQVSEWMSGQGL--AFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGAL 143 (490)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~l 143 (490)
..++.-....+++|...|.+.+|+++++++...+. .-+...-+.++....+. +..+..++.+.+... + ...+
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--d---~~eI 1055 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--D---APDI 1055 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--c---HHHH
Confidence 44666677788888888888888888888885432 12334555566555555 555556655555421 1 3346
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 011236 144 LNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSEL 223 (490)
Q Consensus 144 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 223 (490)
...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 6778888999999999988521 2222333332 667888888888755 2467888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 011236 224 SSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWG 303 (490)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 303 (490)
++|...|.+. -|...|..++.++.+.|++++|.++|....+... +....+.++.+|++.+++++...+.+
T Consensus 1122 kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~---e~~Idt~LafaYAKl~rleele~fI~ 1191 (1630)
T 1xi4_A 1122 KEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR---ESYVETELIFALAKTNRLAELEEFIN 1191 (1630)
T ss_pred HHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc---cccccHHHHHHHHhhcCHHHHHHHHh
Confidence 9999998654 4566777899999999999999999988776543 33333458888999988886444431
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011236 304 LQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPT 383 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 383 (490)
.++...|..+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++. .+
T Consensus 1192 -------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n 1249 (1630)
T 1xi4_A 1192 -------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NS 1249 (1630)
T ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CC
Confidence 356677778999999999999999999985 37889999999999999999999876 26
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHH
Q 011236 384 PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHA 462 (490)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ 462 (490)
..+|..+..+|...|++..|..+... +. .++..+..++..|.+.|.+++|..+++......+. ...|+-
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~-Ii---------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLH-IV---------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHh-hh---------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 78899999999999999988876654 22 45667779999999999999999999999888866 889999
Q ss_pred HHHHHHhcC-CcHHHHHHHHH
Q 011236 463 LTEAHIRSG-QEVDGLLESMK 482 (490)
Q Consensus 463 l~~~~~~~g-~~a~~~~~~m~ 482 (490)
|...|.+.. ++.++.++--.
T Consensus 1320 LaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 999999988 54444444333
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=6.2e-19 Score=172.80 Aligned_cols=113 Identities=9% Similarity=-0.017 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHH---HhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH
Q 011236 280 LGYNHLISHYASLGNKDEMMKFWGLQK---IKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIIL 356 (490)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (490)
.||+++|.+||+.|++++|.++|++|. ..+..||..||++||.+||+.|++++|.++|++|.+.|+.||..|||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 345555555555555555555554433 22334555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011236 357 LGYSQKGM-IEKADAVLKEIVKKGKTPTPNSWSIIAA 392 (490)
Q Consensus 357 ~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 392 (490)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 55555544 2444455555555555555555554443
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=6e-15 Score=149.55 Aligned_cols=379 Identities=10% Similarity=0.058 Sum_probs=289.0
Q ss_pred CCCCcccHHHhhccCCCCCCChHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH
Q 011236 32 KPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQ--KISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAV 109 (490)
Q Consensus 32 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 109 (490)
+|......++.+...|.+.+++. ++++....+- .-+....+.++....+. +.....+..+...... ..-
T Consensus 984 ~PeeVs~~vKaf~~aglp~Eaie-LLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~e 1054 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIE-LLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APD 1054 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHH-HHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHH
Confidence 55667778888889999999888 8888774421 13446666677666666 4566666666554221 233
Q ss_pred HHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcC
Q 011236 110 QLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHE 189 (490)
Q Consensus 110 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 189 (490)
+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|+++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~---~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV---NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC---HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHH
Confidence 77788899999999999999742 2333344433 6789999999998652 5789999999999999999
Q ss_pred cHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011236 190 KIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKC 269 (490)
Q Consensus 190 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 269 (490)
+|.+.|.+. -|...|..++.++.+.|++++|.++|.... +....+...+ .++.+|++.+++++...+..
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mAr-k~~~e~~Idt--~LafaYAKl~rleele~fI~-- 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KKARESYVET--ELIFALAKTNRLAELEEFIN-- 1191 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhcccccccH--HHHHHHHhhcCHHHHHHHHh--
Confidence 999999663 477788899999999999999999999877 4442233333 49999999999886544432
Q ss_pred hhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 011236 270 EDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 349 (490)
. ++...|..+...|...|++++|..+|... ..|..+...+++.|++++|.+.+++. .+.
T Consensus 1192 -----~-~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~ 1250 (1630)
T 1xi4_A 1192 -----G-PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NST 1250 (1630)
T ss_pred -----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCH
Confidence 2 66677888999999999999999999963 48999999999999999999999987 356
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHH
Q 011236 350 RVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVS 428 (490)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~ 428 (490)
.+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++..+. +.|.. ..|+
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~-------LeraH~gmft 1318 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG-------LERAHMGMFT 1318 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-------cChhHhHHHH
Confidence 889999999999999999988766432 3677788999999999999999999998876 33433 5666
Q ss_pred HHHHHHHc--CCCHHHHHHHHHHHHhccc-----c-hhhhHHHHHHHHhcC--CcHH
Q 011236 429 SILDWLGD--NRDVEEVEAFVSSLKIKVQ-----K-RNMYHALTEAHIRSG--QEVD 475 (490)
Q Consensus 429 ~l~~~~~~--~g~~~~a~~~~~~~~~~~~-----~-~~~~~~l~~~~~~~g--~~a~ 475 (490)
.+...+.+ .++..++.+.|..-....+ . ...|.-++..|.+.| +.|.
T Consensus 1319 ELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1319 ELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 66666654 4556666666664444333 2 778999999999998 6666
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=6e-16 Score=135.52 Aligned_cols=228 Identities=13% Similarity=0.044 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccC-CC----hhh
Q 011236 207 NFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKS-KD----ALG 281 (490)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~ 281 (490)
...+..+...+...|++++|..+|+++. +.. .+..++..+..+|...|++++|+..+++.....+.. ++ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAW-ELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH-Hhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 3456677777888888888888888877 444 566777778888888888888888888877655430 11 567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh
Q 011236 282 YNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQ 361 (490)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (490)
+..+...+...|++++|...|++.....+ + ...+...|++++|...++.+... .+.+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~-------~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHR--T-------ADILTKLRNAEKELKKAEAEAYV-NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC--C-------HHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCc--h-------hHHHHHHhHHHHHHHHHHHHHHc-CcchHHHHHHHHHHHHH
Confidence 78888888888888888888887777653 2 23455677888888888888775 22345567778888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHH
Q 011236 362 KGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVE 441 (490)
Q Consensus 362 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 441 (490)
.|++++|...++++.+..+. +..+|..+...|...|++++|...++++++.. +.+...+..+...+.+.|+++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD------PNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------HHHHHHHHHHHHHHHHHhhHH
Confidence 88888888888888887654 67788888888888888888888888888722 123567788888888888888
Q ss_pred HHHHHHHHHHhcc
Q 011236 442 EVEAFVSSLKIKV 454 (490)
Q Consensus 442 ~a~~~~~~~~~~~ 454 (490)
+|...++++.+..
T Consensus 225 ~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 225 SALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 8888888888777
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.73 E-value=1.8e-15 Score=143.57 Aligned_cols=369 Identities=13% Similarity=0.075 Sum_probs=249.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCH---HHHHHHHHHccccCCChhHHHHHHHHHHhcC
Q 011236 75 VIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGL---ESAETYFNSLNDEDKVDKLYGALLNCYVREG 151 (490)
Q Consensus 75 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g 151 (490)
+...+.+.|++++|++.|+...+.| ++..+..+..++...|+. ++|...|+...+. ++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCC
Confidence 5566778899999999999998887 455555666666777888 8999999998865 5566777777565655
Q ss_pred -----ChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCc---CcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 011236 152 -----LVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQH---EKIPDVLLDMKENGVPPDNFSYRICINSYGARSEL 223 (490)
Q Consensus 152 -----~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 223 (490)
+.++|+..|++..+.| +...+..|...|...+.. .++.+.+......|. ......+...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 7789999999999876 344788888888776654 445555655555443 44566677777777755
Q ss_pred H----HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhc----
Q 011236 224 S----SMENVLQEMESQSHISMDWGTYSTVANYYIIAG---LKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASL---- 292 (490)
Q Consensus 224 ~----~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 292 (490)
+ .+..+++... ..+ |+ .+..|...|...| +.++|+..|++..+.++ ++...+..+...|...
T Consensus 158 ~~~~~~a~~~~~~a~-~~~--~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~--~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 158 DQHLDDVERICKAAL-NTT--DI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT--VTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp GGGHHHHHHHHHHHT-TTC--TT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--SCHHHHHHHHHHHTCGGGSS
T ss_pred ccCHHHHHHHHHHHH-cCC--HH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCCC
Confidence 4 4444555553 322 33 7778999999999 99999999999988776 5666667788888655
Q ss_pred CChhHHHHHHHHHHHhcCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcC-----C
Q 011236 293 GNKDEMMKFWGLQKIKCKKQLNRDYITMLGS-L--VKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKG-----M 364 (490)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~ 364 (490)
+++++|...|++.. ..+...+..+... + ...+++++|...|++..+.| +...+..|...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 79999999999776 2455666667666 4 56899999999999999876 5667777888787 55 9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHc----
Q 011236 365 IEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD----KNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGD---- 436 (490)
Q Consensus 365 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 436 (490)
+++|...|++.. . -++..+..|...|.. ..+.++|..+|+++.+ .|. ......|...|..
T Consensus 303 ~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-----~g~---~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 303 AKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-----NGQ---NSADFAIAQLFSQGKGT 370 (452)
T ss_dssp HHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-----TTC---TTHHHHHHHHHHSCTTB
T ss_pred HHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-----hCh---HHHHHHHHHHHHhCCCC
Confidence 999999999888 3 377788888888876 4599999999999988 442 3455566666653
Q ss_pred CCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHHHHHHHH
Q 011236 437 NRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVDGLLESM 481 (490)
Q Consensus 437 ~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~~~~m 481 (490)
..+.++|..+++...+.+.. .......+......+ .+|..+.++-
T Consensus 371 ~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~ 418 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQE 418 (452)
T ss_dssp CCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56899999999999998876 332222222221112 5566666543
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=1.1e-15 Score=129.84 Aligned_cols=198 Identities=13% Similarity=0.002 Sum_probs=121.2
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHH
Q 011236 205 PDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNH 284 (490)
Q Consensus 205 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 284 (490)
++...+..+...+...|++++|...|++.. +.++ .+...+..+..++...|++++|+..|++.....+ .+...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERAL-KENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTP--RYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHH
Confidence 455566666666777777777777777766 5444 4566666677777777777777777777666554 45666666
Q ss_pred HHHHHHhc-----------CChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHH
Q 011236 285 LISHYASL-----------GNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPN 353 (490)
Q Consensus 285 l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 353 (490)
+..++... |++++|+..+++.....+ .+...+..+..++...|++++|...|++..+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 66666666 677777777766666554 455566666666667777777777777766654 4556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011236 354 IILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEA 410 (490)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 410 (490)
.+..+|...|++++|...|++..+..+. +...+..+...+...|++++|+..+++.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666677777777777777776665443 5566666666677777777776666654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=8.7e-16 Score=134.45 Aligned_cols=227 Identities=15% Similarity=0.009 Sum_probs=171.4
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCC--CCC----HHHH
Q 011236 137 DKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGV--PPD----NFSY 210 (490)
Q Consensus 137 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~ 210 (490)
...|..+...+...|++++|+..|++..+.. ++..+|..+..++...|++++|.+.+++..+... .|+ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777888888888888888888888776 5778888888888888888888888888766321 112 4677
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHH
Q 011236 211 RICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYA 290 (490)
Q Consensus 211 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (490)
..+...+...|++++|...|+++. ... |+. ..+...|++++|...++++....+ .+...+..+...+.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~-~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSL-TEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP--EKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH-hcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc--chHHHHHHHHHHHH
Confidence 778888888888888888888887 322 332 346667788888888888776554 46677788888888
Q ss_pred hcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 011236 291 SLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADA 370 (490)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 370 (490)
..|++++|...+++.....+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|..
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 88888888888888777665 566777888888888888888888888887753 3346677778888888888888888
Q ss_pred HHHHHHHcC
Q 011236 371 VLKEIVKKG 379 (490)
Q Consensus 371 ~~~~m~~~~ 379 (490)
.+++..+..
T Consensus 229 ~~~~a~~~~ 237 (258)
T 3uq3_A 229 TLDAARTKD 237 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 888777653
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=1.7e-15 Score=128.65 Aligned_cols=200 Identities=18% Similarity=0.103 Sum_probs=145.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHH
Q 011236 240 SMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYIT 319 (490)
Q Consensus 240 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 319 (490)
+++...+..+...+...|++++|+..|++.....+ .+...+..+..++...|++++|...+++.....+ .+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP--QDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHH
Confidence 35667788888889999999999999998887666 5788888888899999999999999998888765 56677888
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011236 320 MLGSLVKI-----------GELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWS 388 (490)
Q Consensus 320 l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 388 (490)
+..++... |++++|...+++..+.. +-+...+..+...|...|++++|+..|++.++.+ .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 88888888 88888888888887752 2245667777788888888888888888888776 4777888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc-hhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 389 IIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK-PSLVSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
.+..+|...|++++|+..|+++++. .|+ ...+..+...+...|++++|...+++...
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~-------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQ-------APKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 8888888888888888888888772 243 46677777788888888888887776543
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.70 E-value=4.6e-15 Score=131.09 Aligned_cols=250 Identities=11% Similarity=-0.024 Sum_probs=166.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCC--hhhHHHHH
Q 011236 209 SYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKD--ALGYNHLI 286 (490)
Q Consensus 209 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~ 286 (490)
.+......+...|++++|...|+++. +... .+...+..+..+|...|++++|+..+++....... ++ ..+|..+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l-~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~lg 81 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLE-AKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA-TKAKSADFEYYG 81 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHH-HTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCT-TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH-HhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCc-hhHHHHHHHHHH
Confidence 34445566667777777777777776 3332 33446666777777777777777777777662211 22 22367777
Q ss_pred HHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHH
Q 011236 287 SHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIE 366 (490)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 366 (490)
..+...|++++|...|++.....+ .+...+..+...+...|++++|...+++..+. .+.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776655 45567777777788888888888888777665 2234455555662333445888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHhhhcCcCCCcc------hhhHHHHHHHHHcC
Q 011236 367 KADAVLKEIVKKGKTPTPNSWSIIAAGYADKNN---MEKAFECMKEALAVHEENKFWRPK------PSLVSSILDWLGDN 437 (490)
Q Consensus 367 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~ 437 (490)
+|...|+++.+..+. +...+..+...+...|+ +++|...++++++... -.|+ ...|..+...+...
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA----PGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG----GGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh----cccccchHHHHHHHHHHHHHHHHc
Confidence 888888888876543 56677777777777777 7778888888877331 1122 24667777788888
Q ss_pred CCHHHHHHHHHHHHhcccc-hhhhHHHHHHHH
Q 011236 438 RDVEEVEAFVSSLKIKVQK-RNMYHALTEAHI 468 (490)
Q Consensus 438 g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~ 468 (490)
|++++|...++++.+..|. +..+..+.....
T Consensus 235 ~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 8888888888888888877 666665554443
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.70 E-value=7.1e-15 Score=129.85 Aligned_cols=196 Identities=11% Similarity=0.035 Sum_probs=86.3
Q ss_pred hHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc--chHHHHHHHH
Q 011236 106 DHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSA--LNYNGIMCLY 182 (490)
Q Consensus 106 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~ 182 (490)
........+...|++++|+..|+...+..| +..+|..+...+...|++++|+..+++..+.+..|+. .+|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 334444455555555555555555555444 2334555555555555555555555555542211111 1144444445
Q ss_pred HhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011236 183 TNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKA 262 (490)
Q Consensus 183 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 262 (490)
...|++++|.+.|++..+... .+..++..+...+...|++++|...|++.. +... .+...+..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~-~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQI-RPTT-TDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGC-CSSC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHh-hcCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555444321 123344444444444444444444444444 2221 2333333333122222344444
Q ss_pred HHHHHHHhhhhccCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHH
Q 011236 263 IIYLKKCEDIVSKSKDALGYNHLISHYASLGN---KDEMMKFWGLQK 306 (490)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~ 306 (490)
+..|+++.+..+ .+...+..+..++...|+ +++|...+++..
T Consensus 162 ~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 162 DSSFVKVLELKP--NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHST--TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHhCc--cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 444444444332 233334444444444443 444444444333
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=8.5e-15 Score=134.58 Aligned_cols=248 Identities=9% Similarity=0.047 Sum_probs=200.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhhhccCCChhhHHHHH
Q 011236 208 FSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGL-KEKAIIYLKKCEDIVSKSKDALGYNHLI 286 (490)
Q Consensus 208 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 286 (490)
..|..+...+...|++++|+..|+++. ..+. -+..+|+.+..++...|+ +++|+..|+++....+ .+...|..+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al-~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P--~~~~a~~~~g 173 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAI-ELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHH-HhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC--CCHHHHHHHH
Confidence 457777778888889999999999887 5554 567788888888889996 9999999999888766 5788888999
Q ss_pred HHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh-cCCH
Q 011236 287 SHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQ-KGMI 365 (490)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 365 (490)
.++...|++++|+..|++++...+ .+...|..+..++.+.|++++|...++++++... -+...|+.+..++.+ .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999998888776 6778888888899999999999999999888633 366788888888888 5665
Q ss_pred HHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCC
Q 011236 366 EKA-----DAVLKEIVKKGKTPTPNSWSIIAAGYADKN--NMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNR 438 (490)
Q Consensus 366 ~~A-----~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 438 (490)
++| +..|++.++..+. +...|..+...+...| ++++|++.++++ + .-..+...+..+...+.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~------~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q------PSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T------TTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c------cCCCCHHHHHHHHHHHHHHh
Confidence 777 5888888887665 7788999999898888 688999888887 5 12234467788888887764
Q ss_pred --------C-HHHHHHHHHHH-Hhcccc-hhhhHHHHHHHHh
Q 011236 439 --------D-VEEVEAFVSSL-KIKVQK-RNMYHALTEAHIR 469 (490)
Q Consensus 439 --------~-~~~a~~~~~~~-~~~~~~-~~~~~~l~~~~~~ 469 (490)
+ .++|.++++++ .+..|. ...|..+...+..
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58999999999 888888 8888888777754
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.69 E-value=1.5e-14 Score=126.13 Aligned_cols=203 Identities=14% Similarity=-0.012 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 011236 244 GTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGS 323 (490)
Q Consensus 244 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (490)
..+..+...+...|++++|...|+++....+ .+...+..+...+...|++++|.+.+++.....+ .+...+..+...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP--SSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4445555555666666666666665555433 3455555666666666666666666665555443 344555556666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 011236 324 LVKIGELEEAEKMLEEWELSCYCY-DFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEK 402 (490)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (490)
+...|++++|.+.++++.+.+..| +...+..+...|...|++++|...++++.+..+. +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665522222 3345555666666666666666666666665433 45566666666666666666
Q ss_pred HHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 403 AFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 403 a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
|..+++++.+ ....+...+..+...+...|++++|.++++++.+..|.
T Consensus 194 A~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 194 ARQYYDLFAQ------GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHHT------TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHH------hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 6666666655 11133345555666666666666666666666666555
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=3.6e-14 Score=121.24 Aligned_cols=205 Identities=10% Similarity=-0.044 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHH
Q 011236 243 WGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLG 322 (490)
Q Consensus 243 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 322 (490)
...+..+...+...|++++|...|+++....+ .+...+..+...+...|++++|...+++.....+ .+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP--KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 44555666666777777777777776665444 4556666666777777777777777776666544 45556666677
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 011236 323 SLVKI-GELEEAEKMLEEWELSCYCY-DFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNM 400 (490)
Q Consensus 323 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 400 (490)
.+... |++++|...++++.+.+..| +...+..+...|...|++++|...++++.+..+. +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 77777 77777777777766622222 2445666677777777777777777777765433 566677777777777777
Q ss_pred HHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 401 EKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
++|...++++++..+ ..+...+..+...+...|+.+.|..+++.+.+..|.
T Consensus 164 ~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 164 GDADYYFKKYQSRVE-----VLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHHHHHHHHHHHC-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 777777777766220 023455556666666777777777777777666665
No 47
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.68 E-value=3.9e-15 Score=139.70 Aligned_cols=298 Identities=14% Similarity=0.044 Sum_probs=147.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----cchHHHHHHHHHhcCCcCcHHHHHHHHHHC----CCCC-CH
Q 011236 137 DKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGS----ALNYNGIMCLYTNTGQHEKIPDVLLDMKEN----GVPP-DN 207 (490)
Q Consensus 137 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~ 207 (490)
...+......+...|++++|...|++..+.+.. + ..+|..+...+...|++++|...+++.... +-.| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 444555566666666666666666666665322 2 234555555555666666666655554321 1111 12
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCC----hhhHH
Q 011236 208 FSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKD----ALGYN 283 (490)
Q Consensus 208 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 283 (490)
.++..+...+...|++++|...+++.. ...+..++ ..++.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al------------------------------------~~~~~~~~~~~~~~~~~ 131 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHL------------------------------------DISRELNDKVGEARALY 131 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------------------HHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------------------HHHHhcccccchHHHHH
Confidence 234444444555555555555554443 22111011 22344
Q ss_pred HHHHHHHhcCC--------------------hhHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011236 284 HLISHYASLGN--------------------KDEMMKFWGLQKIKCK-----KQLNRDYITMLGSLVKIGELEEAEKMLE 338 (490)
Q Consensus 284 ~l~~~~~~~~~--------------------~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 338 (490)
.+...|...|+ +++|...+++...... .....++..+...+...|++++|...++
T Consensus 132 ~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 211 (406)
T 3sf4_A 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 211 (406)
T ss_dssp HHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH
T ss_pred HHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44444444444 4455444443332211 0111234455555555566666655555
Q ss_pred HHHhcCCC-CC----chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHH
Q 011236 339 EWELSCYC-YD----FRVPNIILLGYSQKGMIEKADAVLKEIVKKGKT-PT----PNSWSIIAAGYADKNNMEKAFECMK 408 (490)
Q Consensus 339 ~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~ 408 (490)
+..+.... ++ ..++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...++
T Consensus 212 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 212 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 55432110 01 124555566666666666666666665442111 01 3455666666667777777777776
Q ss_pred HHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcc------cc-hhhhHHHHHHHHhcC
Q 011236 409 EALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKV------QK-RNMYHALTEAHIRSG 471 (490)
Q Consensus 409 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~-~~~~~~l~~~~~~~g 471 (490)
++++..+..........++..+...+...|++++|...+++..+.. +. ..++..+...+...|
T Consensus 292 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 6665332111111113455566666666777777777666654431 11 455666666666555
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.67 E-value=5.4e-12 Score=123.73 Aligned_cols=425 Identities=8% Similarity=0.017 Sum_probs=296.0
Q ss_pred CCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcC---HHHHHH
Q 011236 49 PDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRG---LESAET 125 (490)
Q Consensus 49 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~ 125 (490)
+.+.+. .+++-+... +-|...|..++..+.+.+.++.+..+|+.+...- |.....+...+..-.+.++ ++.+..
T Consensus 48 ~~d~i~-~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIG-KLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHH-HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHH-HHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 344444 455555554 5699999999999999999999999999999886 6788888888888888898 999999
Q ss_pred HHHHccccC---CChhHHHHHHHHHHhcCCh--------hHHHHHHHHHHh-cCC-CCC-cchHHHHHHHHHh-------
Q 011236 126 YFNSLNDED---KVDKLYGALLNCYVREGLV--------DESLSLMQKMKE-MGS-FGS-ALNYNGIMCLYTN------- 184 (490)
Q Consensus 126 ~~~~~~~~~---p~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~p~-~~~~~~l~~~~~~------- 184 (490)
+|++..... |++..|...+....+.++. +...++|+.... .|. .|+ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999999887 8888999888877666654 334477777654 366 554 3567777765442
Q ss_pred --cCCcCcHHHHHHHHHHCCCCCCHHHHHHH---HHHHh----------ccCChHHHHHHHHHHHh-CCC----CC----
Q 011236 185 --TGQHEKIPDVLLDMKENGVPPDNFSYRIC---INSYG----------ARSELSSMENVLQEMES-QSH----IS---- 240 (490)
Q Consensus 185 --~~~~~~a~~~~~~m~~~~~~p~~~~~~~l---i~~~~----------~~g~~~~a~~~~~~~~~-~~~----~~---- 240 (490)
.++.+.+..+|+..+......-..+|... ..... ...+++.|...+.++.. ..+ ++
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 33466788899998863222122333222 21110 01123344455544321 011 10
Q ss_pred -------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHH
Q 011236 241 -------M-----D---WGTYSTVANYYIIAG-------LKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEM 298 (490)
Q Consensus 241 -------~-----~---~~~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 298 (490)
| + ...|...+.---..+ ..+.+..+|+++....+ .+...|...+..+...|+.++|
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p--~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC--FAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHSCCTTH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCcHHHH
Confidence 1 0 123333333222221 13446678888888666 5788899999988899999999
Q ss_pred H-HHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------CCC------------chhHHHHH
Q 011236 299 M-KFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCY---------CYD------------FRVPNIIL 356 (490)
Q Consensus 299 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~ 356 (490)
. .+|++.....+ .+...+...+....+.|+++.|.++|+.+.+... .|+ ..+|...+
T Consensus 363 ~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 7 99999887654 5666677888888899999999999999886410 132 23677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHH
Q 011236 357 LGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADK-NNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLG 435 (490)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 435 (490)
....+.|..+.|..+|.+.++.-..+....|...+..-.+. ++.+.|..+|+.+++.. .-+...+...+....
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~------p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF------ATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH------TTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC------CCchHHHHHHHHHHH
Confidence 88888999999999999998861112334444333333343 55899999999999833 234456678888888
Q ss_pred cCCCHHHHHHHHHHHHhccc---c-hhhhHHHHHHHHhcC--CcHHHHHHHHHhCC
Q 011236 436 DNRDVEEVEAFVSSLKIKVQ---K-RNMYHALTEAHIRSG--QEVDGLLESMKADD 485 (490)
Q Consensus 436 ~~g~~~~a~~~~~~~~~~~~---~-~~~~~~l~~~~~~~g--~~a~~~~~~m~~~~ 485 (490)
..|+.+.|..+|++.....+ . ...|..++..-.+.| +.+..+.+++.+.-
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 89999999999999999877 3 788999999999999 78999999988754
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=4.2e-15 Score=128.86 Aligned_cols=197 Identities=15% Similarity=0.104 Sum_probs=82.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHH
Q 011236 209 SYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISH 288 (490)
Q Consensus 209 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 288 (490)
.|..+...+...|++++|...|+++. +... .+...+..+..++...|++++|+..|+++....+ .+..++..+...
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l-~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~ 100 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAI-EENK-EDAIPYINFANLLSSVNELERALAFYDKALELDS--SAATAYYGAGNV 100 (243)
T ss_dssp -----------------CCTTHHHHH-TTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHH-HhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--cchHHHHHHHHH
Confidence 34444445555555555555555554 3222 3344444455555555555555555555444332 344444445555
Q ss_pred HHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHH
Q 011236 289 YASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKA 368 (490)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 368 (490)
+...|++++|...+++.....+ .+...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-NENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554444433 33344444444444444444444444444443 112333344444444444444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 369 DAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 369 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
...++++.+..+. +..++..+...|...|++++|...++++++
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 4444444443222 334444444444444444444444444444
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=3.4e-14 Score=123.92 Aligned_cols=199 Identities=10% Similarity=-0.108 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHH
Q 011236 208 FSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLIS 287 (490)
Q Consensus 208 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 287 (490)
..+..+...+...|++++|...|+++. +... .+..++..+..+|...|++++|.+.|+++....+ .+...+..+..
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~ 113 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKAL-EIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDS--RNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH-hcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHH
Confidence 445555666666666666666666665 3322 3455666666666666777777776666665443 35566666666
Q ss_pred HHHhcCChhHHHHHHHHHHHhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHH
Q 011236 288 HYASLGNKDEMMKFWGLQKIKCKK-QLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIE 366 (490)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 366 (490)
.+...|++++|.+++++....... .+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 667777777777777665551111 234556666666777777777777777766652 224556666777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 367 KADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 367 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
+|...++++.+..+. +...+..+...+...|++++|.++++++.+
T Consensus 193 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777665432 566677777777777777777777777766
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=1.9e-14 Score=132.20 Aligned_cols=247 Identities=9% Similarity=0.044 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC-cCcHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011236 138 KLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQ-HEKIPDVLLDMKENGVPPDNFSYRICINS 216 (490)
Q Consensus 138 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 216 (490)
.+|+.+...+.+.|++++|+..+++....... +..+|+.+..++...|+ +++|+..|++.++... -+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 34555555555555555555555555554333 44455555555555554 5555555555555322 134455555555
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHh-cCCh
Q 011236 217 YGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYAS-LGNK 295 (490)
Q Consensus 217 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 295 (490)
+...|++++|+..|+++. ..+. -+..+|..+..++...|++++|+..|+++....+ .+...|+.+..++.. .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal-~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P--~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADIL-NQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV--RNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHH-HhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCcc
Confidence 555555555555555555 3333 3455555555556666666666666666555444 355556666665555 4443
Q ss_pred hHH-----HHHHHHHHHhcCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcC-----
Q 011236 296 DEM-----MKFWGLQKIKCKKQLNRDYITMLGSLVKIG--ELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKG----- 363 (490)
Q Consensus 296 ~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 363 (490)
++| +..+++.+...+ .+...|..+...+...| ++++|.+.+.++ +. .+.+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 555 355555555444 44455555555555555 456666666555 22 2223445555666665543
Q ss_pred ----CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHH
Q 011236 364 ----MIEKADAVLKEI-VKKGKTPTPNSWSIIAAGY 394 (490)
Q Consensus 364 ----~~~~A~~~~~~m-~~~~~~p~~~~~~~l~~~~ 394 (490)
..++|..+|+++ .+.++. ....|..+...+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 246666666666 444322 233444444433
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=3.7e-15 Score=131.88 Aligned_cols=196 Identities=10% Similarity=-0.140 Sum_probs=83.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHH
Q 011236 209 SYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISH 288 (490)
Q Consensus 209 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 288 (490)
++..+...+...|++++|...|+++. ..+. .+..++..+..+|...|++++|...|+++....+ .+..++..+..+
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~ 120 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQAL-AIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP--TYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH-HcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc--cccHHHHHHHHH
Confidence 34444444444444444444444444 2222 2344444444444444555555544444444332 234444444444
Q ss_pred HHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHH
Q 011236 289 YASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKA 368 (490)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 368 (490)
+...|++++|...++++....+ +.......+..+...|++++|...+++.... .+++...+ .++..+...++.++|
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~a 196 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGW-NIVEFYLGNISEQTL 196 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHH-HHHHHHTTSSCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHH-HHHHHHHHhcCHHHH
Confidence 4445555555555444444322 1112222222233344455555555444433 12222222 233344444444444
Q ss_pred HHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 369 DAVLKEIVKKGKTP---TPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 369 ~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
...+++..+..... +..+|..+...|...|++++|...|++++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444443321110 123444445555555555555555555544
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=1.1e-14 Score=126.12 Aligned_cols=211 Identities=12% Similarity=-0.020 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHH
Q 011236 242 DWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITML 321 (490)
Q Consensus 242 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 321 (490)
....|..+...+...|++++|...|+++....+ .+...+..+...+...|++++|...+++.....+ .+...+..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK--EDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHH
Confidence 344555566666666666666666666665443 3556666666666666666666666666655543 4455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 011236 322 GSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNME 401 (490)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 401 (490)
..+...|++++|.+.++++.+.. +.+...+..+...|...|++++|...++++.+..+. +...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666666542 234455566666666666666666666666655433 5556666666666666666
Q ss_pred HHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHH
Q 011236 402 KAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHAL 463 (490)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l 463 (490)
+|...++++.+.. ..+..++..+...+...|++++|...++++.+..|. ...+..+
T Consensus 177 ~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 177 EALSQFAAVTEQD------PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhC------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 6666666666521 123455666666666666666666666666666665 4444433
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.66 E-value=4.8e-15 Score=139.12 Aligned_cols=307 Identities=13% Similarity=0.040 Sum_probs=190.2
Q ss_pred CChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCC-----hhHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-C
Q 011236 102 FSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKV-----DKLYGALLNCYVREGLVDESLSLMQKMKEM----GSFG-S 171 (490)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~ 171 (490)
.....+......+...|++++|...|+......|+ ..+|..+...+...|++++|...+++.... +..| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34455667778889999999999999999887764 357888999999999999999999987543 2111 2
Q ss_pred cchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCC--------------------hHHH
Q 011236 172 ALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVP-PD----NFSYRICINSYGARSE--------------------LSSM 226 (490)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~--------------------~~~a 226 (490)
..++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 556888889999999999999999988653110 11 2355566666666666 5555
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011236 227 ENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQK 306 (490)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 306 (490)
...+++.. . ++.... ... ....++..+...+...|++++|...+++..
T Consensus 167 ~~~~~~al-~----------------------------~~~~~~--~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 167 VDFYEENL-S----------------------------LVTALG--DRA-AQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHH-H----------------------------HHHHTT--CHH-HHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHHHH-H----------------------------HHHhcc--CcH-HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55554433 1 000000 000 112344445555555555555555555444
Q ss_pred HhcC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----C-CchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011236 307 IKCK-KQL----NRDYITMLGSLVKIGELEEAEKMLEEWELSCYC----Y-DFRVPNIILLGYSQKGMIEKADAVLKEIV 376 (490)
Q Consensus 307 ~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 376 (490)
.... .++ ..++..+...+...|++++|...+++..+.... + ...++..+...|...|++++|...+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3322 111 124555566666666666666666655432110 0 13456667777778888888888877776
Q ss_pred HcCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCH
Q 011236 377 KKGKT-PT----PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDV 440 (490)
Q Consensus 377 ~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 440 (490)
+.... ++ ..++..+...|...|++++|...++++++..+..........++..+...+...|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 53111 11 456778888888889999999998888775432211122234566666666666654
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=6.9e-14 Score=119.50 Aligned_cols=202 Identities=12% Similarity=-0.032 Sum_probs=152.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHH
Q 011236 206 DNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHL 285 (490)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 285 (490)
+...+..+...+...|++++|.+.|+++. +... .+...+..+..+|...|++++|...++++....+ .+..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDAL-KSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP--DSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChHHHHHH
Confidence 44566777777888888888888888776 4333 4567777788888888888888888888777554 567778888
Q ss_pred HHHHHhc-CChhHHHHHHHHHHHhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcC
Q 011236 286 ISHYASL-GNKDEMMKFWGLQKIKCKK-QLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKG 363 (490)
Q Consensus 286 ~~~~~~~-~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 363 (490)
...+... |++++|...++.+...... .+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 8888888 8888888888877762111 234667778888888888888888888887753 334667778888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 364 MIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 364 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
++++|...++++.+..+..+...+..+...+...|+.+.+..+++.+..
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888888888888765423677777777788888888888888888876
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=7.4e-14 Score=123.43 Aligned_cols=248 Identities=13% Similarity=-0.017 Sum_probs=194.9
Q ss_pred HhccCChHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcC
Q 011236 217 YGARSELSSMENVLQEMESQSHI---SMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLG 293 (490)
Q Consensus 217 ~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 293 (490)
....|++++|+..|+++. +... +.+..++..+..++...|++++|...|+++....+ .+..+|..+...+...|
T Consensus 15 ~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQIL-ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCHHHHHHHHHHHHHH-TSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTT
T ss_pred cCccchHHHHHHHHHHHH-hcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHcc
Confidence 345688999999999998 5432 12467788899999999999999999999998765 57889999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 011236 294 NKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLK 373 (490)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 373 (490)
++++|...|++.....+ .+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...++
T Consensus 92 ~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp CHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999988765 56788999999999999999999999999985 4555555555566677899999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc-hhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 374 EIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK-PSLVSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 374 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
+....... +...+ .++..+...++.++|...++++....+ ...|+ ...+..+...+.+.|++++|...++++.+
T Consensus 169 ~~~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 169 QHFEKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNT---SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHH---HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccc---cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88876433 44444 477778888889999999999876221 11112 47888999999999999999999999999
Q ss_pred cccc-hhhhHHHHHHHHhcC--CcHHHHH
Q 011236 453 KVQK-RNMYHALTEAHIRSG--QEVDGLL 478 (490)
Q Consensus 453 ~~~~-~~~~~~l~~~~~~~g--~~a~~~~ 478 (490)
..|. ...+ ..++...| ++|++.+
T Consensus 244 ~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 244 NNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred CCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 8875 3333 44555555 5555443
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.64 E-value=1.5e-14 Score=136.06 Aligned_cols=283 Identities=12% Similarity=0.015 Sum_probs=188.3
Q ss_pred chHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHhC---C-CCCCCHH
Q 011236 173 LNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDN----FSYRICINSYGARSELSSMENVLQEMESQ---S-HISMDWG 244 (490)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~-~~~~~~~ 244 (490)
..+..+...+...|++++|...|++..+.+.. +. ..+..+...+...|++++|...+++.... . +......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34555666777888888888888888775322 22 46777778888888888888888877521 1 1113345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccC----CChhhHHHHHHHHHhcCC-----------------hhHHHHHHH
Q 011236 245 TYSTVANYYIIAGLKEKAIIYLKKCEDIVSKS----KDALGYNHLISHYASLGN-----------------KDEMMKFWG 303 (490)
Q Consensus 245 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 303 (490)
++..+...|...|++++|...+++........ ....++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 66777888888888888888888876542110 234567777788888888 788888777
Q ss_pred HHHHhcC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----chhHHHHHHHHHhcCCHHHHHHHHH
Q 011236 304 LQKIKCK-----KQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYC-YD----FRVPNIILLGYSQKGMIEKADAVLK 373 (490)
Q Consensus 304 ~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 373 (490)
+...... .....++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 6554321 112235677777788888888888888877654211 11 1256677777888888888888887
Q ss_pred HHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHH
Q 011236 374 EIVKKGKT-PT----PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVS 448 (490)
Q Consensus 374 ~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 448 (490)
+..+.... .+ ..++..+...|...|++++|..++++++...+..........++..+...+...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 77653211 11 35677777788888888888888888887443221111112466677777888888888888888
Q ss_pred HHHhcccc
Q 011236 449 SLKIKVQK 456 (490)
Q Consensus 449 ~~~~~~~~ 456 (490)
+..+....
T Consensus 368 ~al~~~~~ 375 (411)
T 4a1s_A 368 QHLQLAXX 375 (411)
T ss_dssp HHHHHCCH
T ss_pred HHHHHHhh
Confidence 87776554
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=8.6e-15 Score=137.75 Aligned_cols=275 Identities=10% Similarity=0.012 Sum_probs=214.8
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCCcCcHHHHHHHHHHC----CC-CCCH
Q 011236 137 DKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSA----LNYNGIMCLYTNTGQHEKIPDVLLDMKEN----GV-PPDN 207 (490)
Q Consensus 137 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~ 207 (490)
...+..+...+...|++++|+..|+++.+.+.. +. ..|..+...+...|++++|...+++..+. +- +...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344566778889999999999999999987433 33 46888999999999999999999988653 11 2234
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHH
Q 011236 208 FSYRICINSYGARSELSSMENVLQEMESQ----SHISMDWGTYSTVANYYIIAGL-----------------KEKAIIYL 266 (490)
Q Consensus 208 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~-----------------~~~a~~~~ 266 (490)
.++..+...+...|++++|...+++.... .+......++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 57888889999999999999999987621 1111235577889999999999 99999999
Q ss_pred HHHhhhhccC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCC-CC----hhhHHHHHHHHHhcCCHHHHHHHH
Q 011236 267 KKCEDIVSKS----KDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKK-QL----NRDYITMLGSLVKIGELEEAEKML 337 (490)
Q Consensus 267 ~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 337 (490)
++........ ....++..+...|...|++++|...+++....... ++ ...+..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 9876532210 23357888899999999999999999988776541 12 126788999999999999999999
Q ss_pred HHHHhcCCCC-----CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHHH
Q 011236 338 EEWELSCYCY-----DFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKT-PT----PNSWSIIAAGYADKNNMEKAFECM 407 (490)
Q Consensus 338 ~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~ 407 (490)
++..+..... ...++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|..++
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9887652211 1456778889999999999999999998764211 12 347889999999999999999999
Q ss_pred HHHHH
Q 011236 408 KEALA 412 (490)
Q Consensus 408 ~~~~~ 412 (490)
+++++
T Consensus 367 ~~al~ 371 (411)
T 4a1s_A 367 EQHLQ 371 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99998
No 59
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=1.9e-14 Score=136.47 Aligned_cols=379 Identities=15% Similarity=0.064 Sum_probs=249.4
Q ss_pred HHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011236 39 LYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRF---KHALQVSEWMSGQGLAFSVHDHAVQLDLIG 115 (490)
Q Consensus 39 l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (490)
+.....+.|+.++++. ++++....|. ...+..+...+...|+. ++|++.|++..+. ++..+..+...+.
T Consensus 9 la~~~~~~g~~~~A~~-~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQ-NYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHH-HHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 4445556677777777 6766666653 34445555556667777 8999999988855 4555666666444
Q ss_pred hhc-----CHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChh---HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 011236 116 KVR-----GLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVD---ESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQ 187 (490)
Q Consensus 116 ~~~-----~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 187 (490)
..+ ++++|...|+.....++ ..++..|...|...+..+ ++.+.+......| +...+..|...|...+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~-~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE-GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC-SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 444 78899999999888663 236777888887766544 4555555555554 56778888888888887
Q ss_pred cCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc----CCHH
Q 011236 188 HEKIPDVLLDMKENGVPPDNFSYRICINSYGARS---ELSSMENVLQEMESQSHISMDWGTYSTVANYYIIA----GLKE 260 (490)
Q Consensus 188 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~ 260 (490)
++++........+.-...+...+..|...|...| +.++|.+.|++.. +.+. ++...+..+...|... ++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa-~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGV-SRGT-VTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTTC-SCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH-HCCC-HHHHHHHHHHHHHhCCCCCCCCHH
Confidence 7776665444433222234447888888888899 9999999999998 6666 6666666677777665 7999
Q ss_pred HHHHHHHHHhhhhccCCChhhHHHHHHH-H--HhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC-----CHHH
Q 011236 261 KAIIYLKKCEDIVSKSKDALGYNHLISH-Y--ASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIG-----ELEE 332 (490)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~ 332 (490)
+|+..|++.. + .+...+..+... + ...+++++|...|++....+ +...+..+...|. .| ++++
T Consensus 235 ~A~~~~~~aa----~-g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 235 TAQALLEKIA----P-GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHG----G-GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHc----C-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 9999999987 2 466677777777 4 56899999999999877654 5677777777777 55 9999
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHH
Q 011236 333 AEKMLEEWELSCYCYDFRVPNIILLGYSQ----KGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD----KNNMEKAF 404 (490)
Q Consensus 333 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~ 404 (490)
|...|++.. . -+...+..|...|.. ..++++|...|++..+.| +......|...|.. ..+..+|.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 999999887 3 355667777777776 348999999999999876 34556677777764 46899999
Q ss_pred HHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 011236 405 ECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIK 453 (490)
Q Consensus 405 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 453 (490)
.+|+.+.+ .|. ++.......+......++.++|..+.++..+.
T Consensus 379 ~~~~~A~~-----~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 379 VFSQLAKA-----QDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHT-----TCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----CCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999988 453 22322222233333445667777777765554
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=6.5e-13 Score=117.27 Aligned_cols=226 Identities=11% Similarity=-0.022 Sum_probs=153.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhhccCCChhh
Q 011236 206 DNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYII----AGLKEKAIIYLKKCEDIVSKSKDALG 281 (490)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 281 (490)
+..++..+...+...|++++|...|++.. +. -+..++..+...|.. .+++++|...|++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKAC-DL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHH
Confidence 34455566666666777777777777766 32 334556666667777 777777777777665432 4556
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchhHH
Q 011236 282 YNHLISHYAS----LGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVK----IGELEEAEKMLEEWELSCYCYDFRVPN 353 (490)
Q Consensus 282 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 353 (490)
+..+...|.. .+++++|...|++....+ +...+..+...|.. .+++++|...+++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 6666667766 777777777777666542 55666667777776 777777777777777654 445566
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHhhhcCcCCCcchh
Q 011236 354 IILLGYSQ----KGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD----KNNMEKAFECMKEALAVHEENKFWRPKPS 425 (490)
Q Consensus 354 ~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~ 425 (490)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|+++.+ .+ | ..
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-----~~--~-~~ 219 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE-----LE--N-GG 219 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH-----TT--C-HH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh-----CC--C-HH
Confidence 66666766 777777877777777663 45667777777777 7778888888877776 22 2 45
Q ss_pred hHHHHHHHHHc----CCCHHHHHHHHHHHHhcccc
Q 011236 426 LVSSILDWLGD----NRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 426 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 456 (490)
.+..+...+.. .+++++|.+.+++..+.+|.
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 66666777776 77778888888777777665
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=1.7e-14 Score=131.39 Aligned_cols=283 Identities=14% Similarity=0.067 Sum_probs=146.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----cchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011236 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGS----ALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICIN 215 (490)
Q Consensus 140 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 215 (490)
+......+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.+++..+..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------- 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------- 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-------------
Confidence 334445555666666666666666554221 1 2344455555555555555555555443210
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCC----hhhHHHHHHHHHh
Q 011236 216 SYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKD----ALGYNHLISHYAS 291 (490)
Q Consensus 216 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 291 (490)
....+.+....++..+...|...|++++|...+++........++ ..++..+...+..
T Consensus 74 ------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 74 ------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp ------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 000000011233444444555555555555555544332221111 1244445555555
Q ss_pred cCC--------------------hhHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 011236 292 LGN--------------------KDEMMKFWGLQKIKCK-----KQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYC 346 (490)
Q Consensus 292 ~~~--------------------~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 346 (490)
.|+ +++|...+++...... ......+..+...+...|++++|...+++..+....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555 5555555544332211 011234555566666666666666666665532110
Q ss_pred -C----CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhc
Q 011236 347 -Y----DFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKT-PT----PNSWSIIAAGYADKNNMEKAFECMKEALAVHEE 416 (490)
Q Consensus 347 -~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 416 (490)
+ ...++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...++++++..+.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 0 1225566666777777777777777766543111 11 345667777777888888888888877764322
Q ss_pred CcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 011236 417 NKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKV 454 (490)
Q Consensus 417 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 454 (490)
.........++..+...+.+.|++++|...++++.+..
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 11111123466677777778888888888887776543
No 62
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.3e-12 Score=115.40 Aligned_cols=223 Identities=11% Similarity=-0.047 Sum_probs=194.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHhcCCCChhhH
Q 011236 242 DWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYAS----LGNKDEMMKFWGLQKIKCKKQLNRDY 317 (490)
Q Consensus 242 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 317 (490)
+..++..+...|...|++++|+..|++..+ + .+..++..+...|.. .+++++|...|++....+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---L-KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---T-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---C-CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 566778899999999999999999999877 2 456788889999999 999999999999887764 67888
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011236 318 ITMLGSLVK----IGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQ----KGMIEKADAVLKEIVKKGKTPTPNSWSI 389 (490)
Q Consensus 318 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 389 (490)
..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 899999999 999999999999999874 66788889999999 999999999999999976 6778888
Q ss_pred HHHHHhc----cCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHc----CCCHHHHHHHHHHHHhcccchhhhH
Q 011236 390 IAAGYAD----KNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGD----NRDVEEVEAFVSSLKIKVQKRNMYH 461 (490)
Q Consensus 390 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 461 (490)
+...|.. .+++++|+..|+++.+ .+ +...+..+...+.. .+++++|...+++..+.++ +..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~-----~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~ 222 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACD-----LK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCF 222 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHH-----TT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHH-----CC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHH
Confidence 8888888 9999999999999998 32 45677888888988 9999999999999998866 67788
Q ss_pred HHHHHHHh----cC--CcHHHHHHHHHhCCC
Q 011236 462 ALTEAHIR----SG--QEVDGLLESMKADDI 486 (490)
Q Consensus 462 ~l~~~~~~----~g--~~a~~~~~~m~~~~~ 486 (490)
.+...|.+ .+ ++|.+++++..+.|.
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 88999987 66 899999999887653
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.61 E-value=5.7e-14 Score=127.94 Aligned_cols=275 Identities=15% Similarity=0.026 Sum_probs=208.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccC----CChh
Q 011236 209 SYRICINSYGARSELSSMENVLQEMESQSHISMD----WGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKS----KDAL 280 (490)
Q Consensus 209 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 280 (490)
.+......+...|++++|...|+++. +.+. .+ ...+..+...|...|++++|...+++........ ....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al-~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAV-QVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH-hhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 44455677888999999999999987 4332 23 3677788899999999999999998876532110 2356
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHhcC-CCC----hhhHHHHHHHHHhcCC--------------------HHHHHH
Q 011236 281 GYNHLISHYASLGNKDEMMKFWGLQKIKCK-KQL----NRDYITMLGSLVKIGE--------------------LEEAEK 335 (490)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 335 (490)
++..+...+...|++++|...+++...... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 788899999999999999999998776543 122 3377888899999999 999999
Q ss_pred HHHHHHhc----CCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHH
Q 011236 336 MLEEWELS----CYCY-DFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKT-PT----PNSWSIIAAGYADKNNMEKAFE 405 (490)
Q Consensus 336 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~ 405 (490)
.+++.... +..+ ...++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99876543 1111 2346778888899999999999999988753111 12 2378888999999999999999
Q ss_pred HHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-------hhhhHHHHHHHHhcC--CcHHH
Q 011236 406 CMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-------RNMYHALTEAHIRSG--QEVDG 476 (490)
Q Consensus 406 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g--~~a~~ 476 (490)
.+++++...+..........++..+...+...|++++|...++++.+..+. ..++..+...|.+.| ++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 999998855322111112467788889999999999999999988765332 558889999999999 89999
Q ss_pred HHHHHHhCC
Q 011236 477 LLESMKADD 485 (490)
Q Consensus 477 ~~~~m~~~~ 485 (490)
++++..+..
T Consensus 325 ~~~~a~~~~ 333 (338)
T 3ro2_A 325 FAEKHLEIS 333 (338)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 999887653
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=4.5e-13 Score=110.58 Aligned_cols=166 Identities=16% Similarity=0.078 Sum_probs=122.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHH
Q 011236 242 DWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITML 321 (490)
Q Consensus 242 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 321 (490)
+...|..+...|...|++++|+..|++..+..+ .+..++..+..+|...|++++|...+.......+ .+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP--NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence 456677777778888888888888887777655 4667777777777788888888887776666654 5556666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 011236 322 GSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNME 401 (490)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 401 (490)
..+...++++.+...+.+..+. .+.+...+..+...|.+.|++++|+..|++..+..+. +..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 7777777788787777777765 2335566777777777788888888888877776554 6677777777888888888
Q ss_pred HHHHHHHHHHH
Q 011236 402 KAFECMKEALA 412 (490)
Q Consensus 402 ~a~~~~~~~~~ 412 (490)
+|++.|+++++
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888777
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=2.4e-12 Score=115.71 Aligned_cols=222 Identities=10% Similarity=-0.025 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHhhhhccCCChhhHHHHHHHH
Q 011236 224 SSMENVLQEMESQSHISMDWGTYSTVANYYI-------IAGLK-------EKAIIYLKKCEDIVSKSKDALGYNHLISHY 289 (490)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (490)
++|..+|++.. ...+ .+...|..++..+. ..|++ ++|..+|++......+ .+...|..++..+
T Consensus 33 ~~a~~~~~~al-~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCL-LVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHH-HHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 45666666665 3332 44555555555554 23664 6777777777663222 4556677777777
Q ss_pred HhcCChhHHHHHHHHHHHhcCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH-hcCCHHH
Q 011236 290 ASLGNKDEMMKFWGLQKIKCKKQLNR-DYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYS-QKGMIEK 367 (490)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 367 (490)
...|++++|..+|++.....+ .+.. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 777777777777776666433 2222 67777777777777777777777777652 223334433322221 2577778
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCc-CCCcc--hhhHHHHHHHHHcCCCHHHHH
Q 011236 368 ADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENK-FWRPK--PSLVSSILDWLGDNRDVEEVE 444 (490)
Q Consensus 368 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~ 444 (490)
|..+|++.++..+. +...|..++..+.+.|+.++|..+|++++. . .+.|+ ...|..++....+.|+.+.|.
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-----~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLT-----SGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-----SSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----ccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88887777776443 667777777777777888888888887776 2 23443 356677777777777888888
Q ss_pred HHHHHHHhcccc
Q 011236 445 AFVSSLKIKVQK 456 (490)
Q Consensus 445 ~~~~~~~~~~~~ 456 (490)
.+++++.+..|.
T Consensus 262 ~~~~~a~~~~p~ 273 (308)
T 2ond_A 262 KVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHccc
Confidence 777777777765
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=1.6e-13 Score=131.02 Aligned_cols=207 Identities=11% Similarity=-0.032 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011236 259 KEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNK-DEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKML 337 (490)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 337 (490)
+++++..++......+ .+...+..+..++...|++ ++|++.|++.....+ .+...|..+..+|...|++++|.+.|
T Consensus 84 ~~~al~~l~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ--VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTCC--CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555444332 4566677777777777777 777777777766654 45667777777777777777777777
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------CCH
Q 011236 338 EEWELSCYCYDFRVPNIILLGYSQK---------GMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADK--------NNM 400 (490)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------~~~ 400 (490)
++..+. .|+...+..+...|... |++++|...|++..+..+. +...|..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 777764 35556677777777777 7788888888887776544 677777777777777 778
Q ss_pred HHHHHHHHHHHHhhhcCcCCCc----chhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--Cc
Q 011236 401 EKAFECMKEALAVHEENKFWRP----KPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QE 473 (490)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~ 473 (490)
++|+..|+++++ +.| +...|..+..++...|++++|...|+++.+..|. ...+..+..++...| ++
T Consensus 238 ~~A~~~~~~al~-------~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 238 QQALSAYAQAEK-------VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHHHHHHH-------HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888877 234 4567777778888888888888888888887777 777777777777777 55
Q ss_pred HHHHH
Q 011236 474 VDGLL 478 (490)
Q Consensus 474 a~~~~ 478 (490)
|++.+
T Consensus 311 Ai~~~ 315 (474)
T 4abn_A 311 LLESK 315 (474)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55443
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=1.3e-12 Score=121.56 Aligned_cols=232 Identities=8% Similarity=0.035 Sum_probs=168.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCC-----ChhhH
Q 011236 213 CINSYGARSELSSMENVLQEMESQS-HISM----DWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSK-----DALGY 282 (490)
Q Consensus 213 li~~~~~~g~~~~a~~~~~~~~~~~-~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~ 282 (490)
....+...|++++|...|++.. +. .-.+ ...++..+..+|...|++++|+..+++........+ ...++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAE-SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 5566778899999999999887 32 1112 246777888899999999999999988876544312 23577
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCC-CCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCchhH
Q 011236 283 NHLISHYASLGNKDEMMKFWGLQKIKCKK-QLN----RDYITMLGSLVKIGELEEAEKMLEEWELS----CY-CYDFRVP 352 (490)
Q Consensus 283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 352 (490)
+.+...|...|++++|...+++....... ++. .++..+...|...|++++|...+++..+. +. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 88888899999999999999877765331 111 36778888899999999999999888762 22 3345567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHhhhcCcCCCcc-h
Q 011236 353 NIILLGYSQKGMIEKADAVLKEIVKKG----KTPTPNSWSIIAAGYADKNN---MEKAFECMKEALAVHEENKFWRPK-P 424 (490)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p~-~ 424 (490)
..+...|.+.|++++|...+++..+.. -+.....+..+...+...|+ .++|+.++++. +..|+ .
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~--------~~~~~~~ 339 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK--------MLYADLE 339 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--------TCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--------cCHHHHH
Confidence 888888999999999999988876531 11112335677788888888 66777776664 22233 3
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 011236 425 SLVSSILDWLGDNRDVEEVEAFVSSLKIK 453 (490)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 453 (490)
..+..+...|...|++++|...+++..+.
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56778888899999999999999887654
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=6.1e-12 Score=113.03 Aligned_cols=218 Identities=10% Similarity=0.010 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHh-------cCCc-------CcHHHHHHHHHHCCCCC-CHHHHHHHHHHHh
Q 011236 154 DESLSLMQKMKEMGSFGSALNYNGIMCLYTN-------TGQH-------EKIPDVLLDMKENGVPP-DNFSYRICINSYG 218 (490)
Q Consensus 154 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~ 218 (490)
++|..+|++.....+. ++..|..++..+.. .|++ ++|..+|++.++. +.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 4555555555554222 44455555544432 3443 4555555555542 112 3334555555555
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHH-hcCChh
Q 011236 219 ARSELSSMENVLQEMESQSHISMDWG-TYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYA-SLGNKD 296 (490)
Q Consensus 219 ~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 296 (490)
+.|++++|..+|+++. +... .+.. +|..++..+.+.|++++|..+|++..+..+ .+...|........ ..|+.+
T Consensus 111 ~~~~~~~A~~~~~~al-~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLL-AIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHH-TSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHH-hccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555 3221 1122 455555555555555555555555554333 22333332222211 135555
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC--CchhHHHHHHHHHhcCCHHHHHHHHH
Q 011236 297 EMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSC-YCY--DFRVPNIILLGYSQKGMIEKADAVLK 373 (490)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 373 (490)
+|..+|+......+ .+...|..++..+.+.|++++|..+|++..... ++| ....|..++..+.+.|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555544433 334444555555555555555555555555431 222 22344444555555555555555555
Q ss_pred HHHHc
Q 011236 374 EIVKK 378 (490)
Q Consensus 374 ~m~~~ 378 (490)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=1.5e-12 Score=107.31 Aligned_cols=171 Identities=11% Similarity=0.038 Sum_probs=149.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHH
Q 011236 277 KDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIIL 356 (490)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (490)
.+...|..+...|...|++++|++.|++.....+ .+...+..+..++.+.|++++|...+....... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 4677899999999999999999999999988876 677889999999999999999999999998863 33566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHc
Q 011236 357 LGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGD 436 (490)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 436 (490)
..+...++++.|...+.+..+..+. +...+..+...|.+.|++++|++.|+++++..| .+..++..+..++.+
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP------GFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc------hhhhHHHHHHHHHHH
Confidence 8899999999999999999987655 788899999999999999999999999998331 244788899999999
Q ss_pred CCCHHHHHHHHHHHHhcccc
Q 011236 437 NRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 437 ~g~~~~a~~~~~~~~~~~~~ 456 (490)
.|++++|.+.|+++.+..|.
T Consensus 154 ~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHhCCcc
Confidence 99999999999999988876
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=2.7e-12 Score=119.35 Aligned_cols=233 Identities=13% Similarity=0.023 Sum_probs=179.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCC------hhhHH
Q 011236 249 VANYYIIAGLKEKAIIYLKKCEDIVSKSK----DALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQL------NRDYI 318 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~ 318 (490)
....+...|++++|+..|++........+ ...++..+...|...|++++|...+.+......... ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 56678899999999999999876422212 346788999999999999999999998877544222 24688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----chhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHH
Q 011236 319 TMLGSLVKIGELEEAEKMLEEWELSCYCYD-----FRVPNIILLGYSQKGMIEKADAVLKEIVKK----GK-TPTPNSWS 388 (490)
Q Consensus 319 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~ 388 (490)
.+...|...|++++|...+++..+.....+ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999998876421111 237788999999999999999999998872 22 22456799
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCC---HHHHHHHHHHHHhcccc-hhhhHHHH
Q 011236 389 IIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRD---VEEVEAFVSSLKIKVQK-RNMYHALT 464 (490)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~l~ 464 (490)
.+...|.+.|++++|...++++++..+.. +-......+..+...+...|+ .++|..++++.. ..+. ...+..+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKA-GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-LYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-CHHHHHHHHHHHH
Confidence 99999999999999999999998844211 111112345677888889999 778888887762 2233 77889999
Q ss_pred HHHHhcC--CcHHHHHHHHHh
Q 011236 465 EAHIRSG--QEVDGLLESMKA 483 (490)
Q Consensus 465 ~~~~~~g--~~a~~~~~~m~~ 483 (490)
..|...| ++|...+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 9999999 899999988764
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.52 E-value=1e-10 Score=114.72 Aligned_cols=393 Identities=7% Similarity=-0.033 Sum_probs=272.6
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCC---hhHHHHHH
Q 011236 85 FKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGL---VDESLSLM 160 (490)
Q Consensus 85 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~---~~~a~~~~ 160 (490)
..+.+..|+..+..+ +.+...+..++..+.+.+.++.+..+|+.+....| ....|...+..-.+.|+ ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 455566677777666 57999999999999999999999999999999887 57889999999889999 99999999
Q ss_pred HHHHhcC-CCCCcchHHHHHHHHHhcCCc--------CcHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHhc---------
Q 011236 161 QKMKEMG-SFGSALNYNGIMCLYTNTGQH--------EKIPDVLLDMKE-NGV-PPD-NFSYRICINSYGA--------- 219 (490)
Q Consensus 161 ~~m~~~~-~~p~~~~~~~l~~~~~~~~~~--------~~a~~~~~~m~~-~~~-~p~-~~~~~~li~~~~~--------- 219 (490)
++..... ..|++..|..-+....+.++. +.+.++|+..+. .|. .|+ ...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998874 247888888887776666554 234477777654 466 554 4677777765432
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHH---HHHHHHH----------HHcCCHHHHHHHHHHHhhhh------ccC----
Q 011236 220 RSELSSMENVLQEMESQSHISMDWGTY---STVANYY----------IIAGLKEKAIIYLKKCEDIV------SKS---- 276 (490)
Q Consensus 220 ~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~li~~~----------~~~~~~~~a~~~~~~~~~~~------~~~---- 276 (490)
.++++.+..+|+++. ......-..+| ..+...+ -...+++.|...+.++.... .+.
T Consensus 207 q~~~~~~R~iy~raL-~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLL-CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHT-TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HhHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 345678899999997 42211112233 2222111 01123444555555432210 000
Q ss_pred ------C--C------hhhHHHHHHHHHhcC-------ChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH-
Q 011236 277 ------K--D------ALGYNHLISHYASLG-------NKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAE- 334 (490)
Q Consensus 277 ------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~- 334 (490)
| + ...|...+..--..+ ..+.+..+|++.+...+ -....|...+.-+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHH
Confidence 0 1 134555554433322 12345678888888766 57788888888888899999996
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHH
Q 011236 335 KMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGK---------TPT------------PNSWSIIAAG 393 (490)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---------~p~------------~~~~~~l~~~ 393 (490)
.+|+..... ++.+...|-..+...-+.|++++|..+|+++++... .|+ ..+|...+..
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 999999875 445666677788888899999999999999986410 132 3468888888
Q ss_pred HhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcC-CCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC
Q 011236 394 YADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDN-RDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG 471 (490)
Q Consensus 394 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 471 (490)
..+.|+.+.|..+|.++++ .--.+....|...+..-.+. ++.+.|.++|+...+..|. +..|...+......|
T Consensus 444 erR~~~l~~AR~vf~~A~~-----~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRR-----LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHH-----TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHH-----hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence 8889999999999999998 20111233444333333344 5599999999999999888 888888998888888
Q ss_pred --CcHHHHHHHHHhCCC
Q 011236 472 --QEVDGLLESMKADDI 486 (490)
Q Consensus 472 --~~a~~~~~~m~~~~~ 486 (490)
+.|..+|++......
T Consensus 519 ~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 519 EESQVKSLFESSIDKIS 535 (679)
T ss_dssp CHHHHHHHHHHHTTTSS
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 899999999877643
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.51 E-value=1.3e-11 Score=114.47 Aligned_cols=233 Identities=11% Similarity=0.029 Sum_probs=169.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCC-----Chhh
Q 011236 212 ICINSYGARSELSSMENVLQEMESQSH-ISMD----WGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSK-----DALG 281 (490)
Q Consensus 212 ~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~ 281 (490)
.....+...|++++|...|++.. ... -.++ ..++..+..+|...|+++.|...+++........+ ...+
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAE-KELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHH-HHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 34455678899999999999887 321 1122 45677888899999999999999988776433212 2356
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcC-CC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCchhH
Q 011236 282 YNHLISHYASLGNKDEMMKFWGLQKIKCK-KQ----LNRDYITMLGSLVKIGELEEAEKMLEEWELS----CYCYDFRVP 352 (490)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~ 352 (490)
++.+..+|...|++++|.+.+++...... .+ ...++..+...|...|++++|...+++..+. +.+....++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 77888899999999999999987776432 11 2246778888899999999999999988761 222336677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC---C-CHHHHHHHHHHHhccCC---HHHHHHHHHHHHHhhhcCcCCCcc-h
Q 011236 353 NIILLGYSQKGMIEKADAVLKEIVKKGKT---P-TPNSWSIIAAGYADKNN---MEKAFECMKEALAVHEENKFWRPK-P 424 (490)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~---p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p~-~ 424 (490)
..+...|.+.|++++|...+++..+.... | ....+..+...|...++ ..+|+.++++. +..|+ .
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~--------~~~~~~~ 336 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK--------NLHAYIE 336 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT--------TCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC--------CChhHHH
Confidence 88888999999999999999998774221 1 23346666677777888 77777777662 22233 3
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 011236 425 SLVSSILDWLGDNRDVEEVEAFVSSLKIK 453 (490)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 453 (490)
..+..+...|...|++++|...|++..+.
T Consensus 337 ~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 337 ACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56778888999999999999999887654
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.51 E-value=1.6e-11 Score=113.70 Aligned_cols=273 Identities=12% Similarity=0.001 Sum_probs=123.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc----hHHHHHHHHHhcCCcCcHHHHHHHHHHCCC-CCCH----HHH
Q 011236 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSAL----NYNGIMCLYTNTGQHEKIPDVLLDMKENGV-PPDN----FSY 210 (490)
Q Consensus 140 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~~ 210 (490)
.......+...|++++|...+++........+.. +++.+...+...|++++|.+.+++..+... .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344455566777777777777766653221111 344455556666666666666666543110 0111 223
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHh---CCCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccC--C-Chhh
Q 011236 211 RICINSYGARSELSSMENVLQEMES---QSHIS--M-DWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKS--K-DALG 281 (490)
Q Consensus 211 ~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~-~~~~ 281 (490)
..+...+...|++++|...+++... ..+.. | ....+..+...+...|++++|...+++........ + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 4445555566666666666655541 11111 1 12334445555556666666666665554432210 0 1123
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chhH
Q 011236 282 YNHLISHYASLGNKDEMMKFWGLQKIKCKKQLN-RDYI-----TMLGSLVKIGELEEAEKMLEEWELSCYCYD---FRVP 352 (490)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 352 (490)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 444455555555555555555554433221111 1111 112224455555555555554443211100 0122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 353 NIILLGYSQKGMIEKADAVLKEIVKK----GKTPTP-NSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
..+...+...|++++|...+++.... |..++. .++..+..++...|+.++|...+++++.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444555555555555444332 111111 1333444444455555555555555544
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=6.7e-13 Score=126.66 Aligned_cols=212 Identities=9% Similarity=-0.026 Sum_probs=126.5
Q ss_pred CHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHH
Q 011236 119 GLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLV-DESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLL 196 (490)
Q Consensus 119 ~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 196 (490)
.++.+...++......| +...|..+...+...|++ ++|++.|++..+.... +...|..+..+|...|++++|.+.|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35556666665555544 466666667777777777 7777777776665433 45566666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcc---------CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc--------CCH
Q 011236 197 DMKENGVPPDNFSYRICINSYGAR---------SELSSMENVLQEMESQSHISMDWGTYSTVANYYIIA--------GLK 259 (490)
Q Consensus 197 ~m~~~~~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~ 259 (490)
+..+. .|+...+..+..++... |++++|...|++.. +... .+...|..+..+|... |++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV-QMDV-LDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHHHHhhccccchH
Confidence 66654 34555666666666666 66666666666665 3332 3455566666666666 666
Q ss_pred HHHHHHHHHHhhhhcc-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011236 260 EKAIIYLKKCEDIVSK-SKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKM 336 (490)
Q Consensus 260 ~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 336 (490)
++|+..|++.....+. ..+...|..+..+|...|++++|...|++.....+ .+...+..+..++...|++++|.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666554320 01445566666666666666666666665555544 3444555555555555555555543
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=2.4e-13 Score=122.45 Aligned_cols=131 Identities=13% Similarity=0.028 Sum_probs=56.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhCC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh-------c
Q 011236 209 SYRICINSYGARSELSSMENVLQEMESQS-------HISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIV-------S 274 (490)
Q Consensus 209 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~ 274 (490)
++..+...+...|++++|..+|+++. +. ..+....++..+...|...|++++|...+++..... .
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQAL-EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44444555555555555555555544 21 111223344444555555555555555555444321 0
Q ss_pred cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhc-----C--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011236 275 KSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKC-----K--KQLNRDYITMLGSLVKIGELEEAEKMLEEWE 341 (490)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (490)
+ ....++..+...|...|++++|...+++..... . ......+..+...+...|++++|.+.++++.
T Consensus 108 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 108 P-AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp H-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 123344444444555555555555554444331 0 0112233444444444444444444444443
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=8.4e-14 Score=125.43 Aligned_cols=239 Identities=14% Similarity=0.103 Sum_probs=119.6
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHC------C
Q 011236 136 VDKLYGALLNCYVREGLVDESLSLMQKMKEM-------GSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKEN------G 202 (490)
Q Consensus 136 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 202 (490)
+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3566777777888888888888888777653 12223444555666666666666666666655432 1
Q ss_pred C-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh-------c
Q 011236 203 V-PPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIV-------S 274 (490)
Q Consensus 203 ~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~ 274 (490)
- +....++..+...+...|++++|...|+++. ... .
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~------------------------------------~~~~~~~~~~~ 149 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL------------------------------------EIREKVLGKDH 149 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH------------------------------------HHHHHHHCTTC
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH------------------------------------HHHHHhcCCCC
Confidence 1 1122334444444444555555555444443 321 0
Q ss_pred cCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhc------CC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 011236 275 KSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKC------KK-QLNRDYITMLGSLVKIGELEEAEKMLEEWELS---- 343 (490)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 343 (490)
+ .....+..+...+...|++++|..++++..... .. ....++..+...+...|++++|...++++.+.
T Consensus 150 ~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 150 P-DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp H-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1 123344555555555555555555555544431 01 11234555555556666666666666555532
Q ss_pred ---CCCCCch-h------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 344 ---CYCYDFR-V------PNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 344 ---~~~~~~~-~------~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
...+... . +..+...+...+.+.++...++........ +..++..+...|.+.|++++|..+++++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111111 1 111222233345555566666666554222 456788888888888888888888888877
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.46 E-value=1.6e-11 Score=101.00 Aligned_cols=165 Identities=16% Similarity=0.083 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 011236 244 GTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGS 323 (490)
Q Consensus 244 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (490)
..+..+...+...|++++|...++++....+ .+...+..+...+...|++++|...+++.....+ .+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA--FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3455566666677777777777776665444 4556666667777777777777777776666544 455666667777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 011236 324 LVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKA 403 (490)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 403 (490)
+...|++++|.+.++++.+. .+.+...+..+...|...|++++|...++++.+..+. +...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777665 2335556667777777777777787777777776533 566777777777788888888
Q ss_pred HHHHHHHHHh
Q 011236 404 FECMKEALAV 413 (490)
Q Consensus 404 ~~~~~~~~~~ 413 (490)
...++++++.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888777763
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=5.4e-11 Score=110.32 Aligned_cols=233 Identities=11% Similarity=0.010 Sum_probs=176.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCC-C-----ChhhH
Q 011236 248 TVANYYIIAGLKEKAIIYLKKCEDIVSKSK----DALGYNHLISHYASLGNKDEMMKFWGLQKIKCKK-Q-----LNRDY 317 (490)
Q Consensus 248 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~ 317 (490)
.....+...|++++|+..|++........+ ...++..+...|...|+++.|...+.+....... + ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 355667889999999999999876533212 2467888999999999999999999987765431 1 23467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC----CC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 011236 318 ITMLGSLVKIGELEEAEKMLEEWELSC----YC-YDFRVPNIILLGYSQKGMIEKADAVLKEIVK-----KGKTPTPNSW 387 (490)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~ 387 (490)
..+...|...|++++|.+.+++..+.. .. ....++..+...|...|++++|...+++..+ ..+. ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 889999999999999999999887631 11 1234677889999999999999999999987 4433 36788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCC---HHHHHHHHHHHHhcccc-hhhhHHH
Q 011236 388 SIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRD---VEEVEAFVSSLKIKVQK-RNMYHAL 463 (490)
Q Consensus 388 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~l 463 (490)
..+...|.+.|++++|...++++++..... +-......+..+...+...|+ ..+|..++++.. ..+. ...+..+
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~l 342 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITAR-SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTT-CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHH
Confidence 999999999999999999999999844211 111222455666667778888 777777777632 2223 7788899
Q ss_pred HHHHHhcC--CcHHHHHHHHHh
Q 011236 464 TEAHIRSG--QEVDGLLESMKA 483 (490)
Q Consensus 464 ~~~~~~~g--~~a~~~~~~m~~ 483 (490)
...|...| ++|...+++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999 889988887653
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=2.2e-10 Score=105.97 Aligned_cols=306 Identities=10% Similarity=0.005 Sum_probs=215.6
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHh---CCCCC-CCHHHH
Q 011236 175 YNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNF----SYRICINSYGARSELSSMENVLQEMES---QSHIS-MDWGTY 246 (490)
Q Consensus 175 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~-~~~~~~ 246 (490)
+......+...|++++|...+++........+.. ++..+...+...|++++|...+++... ..+.. ....++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556678899999999999988754322322 456677788889999999999998762 11210 012335
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccC--C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC----Chhh
Q 011236 247 STVANYYIIAGLKEKAIIYLKKCEDIVSKS--K----DALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQ----LNRD 316 (490)
Q Consensus 247 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 316 (490)
..+...+...|++++|...+++........ + ....+..+...+...|++++|...+++........ ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 667888999999999999999987644210 1 23456678888899999999999999887765422 1245
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHH
Q 011236 317 YITMLGSLVKIGELEEAEKMLEEWELSCYCYDF-RVPN-----IILLGYSQKGMIEKADAVLKEIVKKGKTPT---PNSW 387 (490)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~ 387 (490)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 777888899999999999999988765222222 1222 233447789999999999988876543221 2357
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccchhhhHHHHHH
Q 011236 388 SIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQKRNMYHALTEA 466 (490)
Q Consensus 388 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 466 (490)
..+...+...|++++|...++++....+. .+..++. ..+..+..++...|+.++|...+++.....+... .+..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g----~~~~ 331 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARS-LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG----FISH 331 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC----CCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc----HHHH
Confidence 78888999999999999999999885432 1222233 3666777888899999999999999887655421 3344
Q ss_pred HHhcCCcHHHHHHHHHhCC
Q 011236 467 HIRSGQEVDGLLESMKADD 485 (490)
Q Consensus 467 ~~~~g~~a~~~~~~m~~~~ 485 (490)
+...|+....+++++....
T Consensus 332 ~~~~g~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 332 FVIEGEAMAQQLRQLIQLN 350 (373)
T ss_dssp HHTTHHHHHHHHHHHHHTT
T ss_pred HHHccHHHHHHHHHHHhCC
Confidence 5566666677777776544
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.40 E-value=5.8e-11 Score=101.52 Aligned_cols=207 Identities=11% Similarity=0.040 Sum_probs=133.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHH
Q 011236 241 MDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITM 320 (490)
Q Consensus 241 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (490)
.++..+......+...|++++|+..|++.....+. ++...+..+..++...|++++|+..+++.....+ .+...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHH
Confidence 34566777777788888888888888877776654 4556666677777788888888888877766554 455667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 011236 321 LGSLVKIGELEEAEKMLEEWELSCYCYDF-------RVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPT---PNSWSII 390 (490)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l 390 (490)
...+...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|++.++ ..|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHH
Confidence 777777888888888887777652 2233 3456666667777777777777777654 5665 2355556
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHH
Q 011236 391 AAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTE 465 (490)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~ 465 (490)
...|... +..+++++.... ..+...|.... ....+.+++|...+++..+..|. ..+...+..
T Consensus 160 ~~~~~~~-----~~~~~~~a~~~~------~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 160 GVLFYNN-----GADVLRKATPLA------SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHH-----HHHHHHHHGGGT------TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHhcc------cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 6665443 333444444411 11223333222 22345578899999998888887 665555543
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=5.7e-11 Score=97.67 Aligned_cols=166 Identities=14% Similarity=0.030 Sum_probs=131.6
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHH
Q 011236 208 FSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLIS 287 (490)
Q Consensus 208 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 287 (490)
..+..+...+...|++++|...++++. .... .+..++..+...+...|++++|...++++....+ .+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVY-DADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP--DNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTC-CTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHH
Confidence 456667777888888888888888876 4443 5677788888888888888888888888877654 56777888888
Q ss_pred HHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHH
Q 011236 288 HYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEK 367 (490)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 367 (490)
.+...|++++|...+++.....+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888777655 566778888888888888888888888888763 3356677888888888899999
Q ss_pred HHHHHHHHHHcC
Q 011236 368 ADAVLKEIVKKG 379 (490)
Q Consensus 368 A~~~~~~m~~~~ 379 (490)
|...++++.+..
T Consensus 163 A~~~~~~~~~~~ 174 (186)
T 3as5_A 163 ALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC
Confidence 988888887653
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=2.9e-11 Score=120.07 Aligned_cols=167 Identities=15% Similarity=0.071 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHH
Q 011236 243 WGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLG 322 (490)
Q Consensus 243 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 322 (490)
..+|+.|..+|.+.|++++|++.|++..+..+ .+..+|..+..+|.+.|++++|+..|++.+...+ .+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P--~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 56777788888888888888888888777655 4677788888888888888888888887777665 56677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 011236 323 SLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEK 402 (490)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (490)
+|.+.|++++|.+.|++..+.. +-+...|+.+...|.+.|++++|+..|++.++..+. +...|..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 8888888888888888887752 224567788888888888888888888888887654 67778888888888888888
Q ss_pred HHHHHHHHHHhh
Q 011236 403 AFECMKEALAVH 414 (490)
Q Consensus 403 a~~~~~~~~~~~ 414 (490)
|.+.++++++..
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 888888877644
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=3.3e-11 Score=119.65 Aligned_cols=169 Identities=15% Similarity=0.072 Sum_probs=137.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 011236 278 DALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILL 357 (490)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (490)
+..+|+.+...|.+.|++++|++.|++.+...+ -+..++..+..+|.+.|++++|.+.|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 457788888888899999999999988887765 567788888888888899999999888888752 224667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHc
Q 011236 358 GYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGD 436 (490)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~ 436 (490)
+|.+.|++++|++.|++.++.++. +...|..+...|.+.|++++|++.|+++++ +.|+. ..+..+..++..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~-------l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALK-------LKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHhhhhhHHHh
Confidence 888889999999888888887655 677888888888888999999999988888 34554 678888888888
Q ss_pred CCCHHHHHHHHHHHHhcccc
Q 011236 437 NRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 437 ~g~~~~a~~~~~~~~~~~~~ 456 (490)
.|++++|.+.++++.+..+.
T Consensus 158 ~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTCCTTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhChh
Confidence 88888888888888776554
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=1.6e-10 Score=98.74 Aligned_cols=150 Identities=8% Similarity=-0.058 Sum_probs=79.0
Q ss_pred CcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 011236 171 SALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVA 250 (490)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 250 (490)
|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|...|++.. +.+. .+..++..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI-KKNY-NLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTC-SHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH-HhCc-chHHHHHHHH
Confidence 3445555555566666666666666666554332444555455555666666666666666655 3332 2344555555
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhccCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC--ChhhHHHHH
Q 011236 251 NYYIIAGLKEKAIIYLKKCEDIVSKSKDA-------LGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQ--LNRDYITML 321 (490)
Q Consensus 251 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 321 (490)
.+|...|++++|+..|++.....+ .+. ..|..+...+...|++++|...|++.....+ . +...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP--GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS-KKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC-HHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC-CcccHHHHHHHH
Confidence 666666666666666666555443 233 3345555555555555555555555444322 2 233444444
Q ss_pred HHHH
Q 011236 322 GSLV 325 (490)
Q Consensus 322 ~~~~ 325 (490)
.++.
T Consensus 161 ~~~~ 164 (228)
T 4i17_A 161 VLFY 164 (228)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.33 E-value=4.1e-11 Score=106.00 Aligned_cols=227 Identities=13% Similarity=0.056 Sum_probs=140.5
Q ss_pred hcCCcCcHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC------CCCCCCHHHHHHHH
Q 011236 184 NTGQHEKIPDVLLDMKEN-------GVPPDNFSYRICINSYGARSELSSMENVLQEMESQ------SHISMDWGTYSTVA 250 (490)
Q Consensus 184 ~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~li 250 (490)
..|++++|...|++..+. +.+....++..+...+...|++++|...++++... .+.+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456777777777666541 11223456777778888888888888888777621 11223356677788
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhh-------ccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhc------CC-CChhh
Q 011236 251 NYYIIAGLKEKAIIYLKKCEDIV-------SKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKC------KK-QLNRD 316 (490)
Q Consensus 251 ~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~-~~~~~ 316 (490)
.+|...|++++|...|++..... .+ ....++..+...|...|++++|...+++..... .. ....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHP-DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888888888888888776542 11 345677788888888888888888888776651 11 23456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCc-hhHHHHHHHHHhcCCHHHH------HHHHHHHHHcCCCC
Q 011236 317 YITMLGSLVKIGELEEAEKMLEEWELS-------CYCYDF-RVPNIILLGYSQKGMIEKA------DAVLKEIVKKGKTP 382 (490)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-~~~~~l~~~~~~~g~~~~A------~~~~~~m~~~~~~p 382 (490)
+..+...+...|++++|...+++..+. ...+.. ..+..+...+...+....+ ...++..... ...
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 777888888888888888888877653 112222 2333333333333322222 2222111111 011
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 383 TPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
...++..+...|...|++++|..+++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234677778888888888888888888765
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.33 E-value=4.4e-11 Score=105.77 Aligned_cols=235 Identities=13% Similarity=0.029 Sum_probs=155.6
Q ss_pred hccCChHHHHHHHHHHHh------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh------ccCCChhhHHHH
Q 011236 218 GARSELSSMENVLQEMES------QSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIV------SKSKDALGYNHL 285 (490)
Q Consensus 218 ~~~g~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l 285 (490)
...|++++|+..|++... ..+.+....++..+...|...|++++|+..++++.... .......++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 356777777777766652 22332456778889999999999999999999987652 110345788899
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhc-----C--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCC-Cchh
Q 011236 286 ISHYASLGNKDEMMKFWGLQKIKC-----K--KQLNRDYITMLGSLVKIGELEEAEKMLEEWELS------CYCY-DFRV 351 (490)
Q Consensus 286 ~~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 351 (490)
...|...|++++|...+++..... . .....++..+...+...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999877652 1 133467888889999999999999999988765 1122 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc
Q 011236 352 PNIILLGYSQKGMIEKADAVLKEIVKK-------GKTPT-PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK 423 (490)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~m~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~ 423 (490)
+..+...|...|++++|...+++..+. ...+. ...|..+...+...+....+.. +..+...........|+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence 778888999999999999999988764 11222 2234444433333332222221 22222111000112232
Q ss_pred -hhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 011236 424 -PSLVSSILDWLGDNRDVEEVEAFVSSLKIK 453 (490)
Q Consensus 424 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 453 (490)
..++..+...+...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 357778888999999999999999887653
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.30 E-value=1.1e-09 Score=95.43 Aligned_cols=176 Identities=10% Similarity=0.009 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011236 298 MMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCY-CYDFRVPNIILLGYSQKGMIEKADAVLKEIV 376 (490)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 376 (490)
|+..+++....+ .++..++..+..++...|++++|.+++.+.+..+. .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555565554443 24445555666777777777777777777655433 1244556666777777777777777777776
Q ss_pred HcCCCC-----CHHHHHHHHHH--Hhc--cCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHH
Q 011236 377 KKGKTP-----TPNSWSIIAAG--YAD--KNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFV 447 (490)
Q Consensus 377 ~~~~~p-----~~~~~~~l~~~--~~~--~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 447 (490)
+. .| +..+...+..+ ... .+++++|..+|+++.+ -.|+..+...++.++.+.|++++|++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~-------~~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ-------TFPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT-------TSCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-------hCCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 64 33 23444444444 222 2367777777777655 2244223333334666777777777777
Q ss_pred HHHHhc----------ccc-hhhhHHHHHHHHhcCCcHHHHHHHHHh
Q 011236 448 SSLKIK----------VQK-RNMYHALTEAHIRSGQEVDGLLESMKA 483 (490)
Q Consensus 448 ~~~~~~----------~~~-~~~~~~l~~~~~~~g~~a~~~~~~m~~ 483 (490)
+.+.+. .|. +.++..+|......|++|.++++++.+
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~ 281 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVK 281 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 765554 244 666655555555566667777777766
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.28 E-value=4.3e-10 Score=100.00 Aligned_cols=246 Identities=10% Similarity=-0.025 Sum_probs=171.1
Q ss_pred CcHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-C-ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011236 189 EKIPDVLLDMKENGVPPDNFSYRICINSYGAR-S-ELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYL 266 (490)
Q Consensus 189 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 266 (490)
.+|.+++.+..+. .++....+ .+ +... + ++++|...|++. ...|...|++++|...|
T Consensus 2 ~~a~~~~~~a~k~-~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 2 SDPVELLKRAEKK-GVPSSGFM-KL---FSGSDSYKFEEAADLCVQA----------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CCHHHHHHHHHHH-SSCCCTHH-HH---HSCCSHHHHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHH
T ss_pred CcHHHHHHHHHHH-hCcCCCcc-hh---cCCCCCccHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHH
Confidence 4677777777664 32222222 22 2211 2 488888888776 33577889999999999
Q ss_pred HHHhhhhccC---C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCC-CC----hhhHHHHHHHHHhc-CCHHHHHHH
Q 011236 267 KKCEDIVSKS---K-DALGYNHLISHYASLGNKDEMMKFWGLQKIKCKK-QL----NRDYITMLGSLVKI-GELEEAEKM 336 (490)
Q Consensus 267 ~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~a~~~ 336 (490)
.+........ + ...+|+.+..+|...|++++|+..+++....... .+ ..++..+..+|... |++++|...
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 8876543210 1 2468889999999999999999999987765431 11 34688889999996 999999999
Q ss_pred HHHHHhcCCCCC-----chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhccCCHHHHHH
Q 011236 337 LEEWELSCYCYD-----FRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTP------NSWSIIAAGYADKNNMEKAFE 405 (490)
Q Consensus 337 ~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~ 405 (490)
+++..+.....+ ..+++.+...|.+.|++++|+..|++..+..+.... ..|..+..++...|++++|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999876421111 346788899999999999999999999987554322 157788888999999999999
Q ss_pred HHHHHHHhhhcCcCCCcchhhHHHHHHHHH--cCCCHHHHHHHHHHHHhcccc
Q 011236 406 CMKEALAVHEENKFWRPKPSLVSSILDWLG--DNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 406 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~ 456 (490)
.|+++++..|+... ......+..++.++. ..+++++|...|+++....|.
T Consensus 221 ~~~~al~l~p~~~~-~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 221 TLQEGQSEDPNFAD-SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHhhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 99999873321110 001123455666665 567799999999887776665
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=6.4e-09 Score=90.68 Aligned_cols=181 Identities=9% Similarity=-0.078 Sum_probs=103.3
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011236 226 MENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQ 305 (490)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (490)
|+..|++.. ..+ .++..++..+..++...|++++|++++.+....++...+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 a~~~l~~l~-~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLL-KDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTT-TTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 556666665 333 244445556667777777777777777765444431034556666777777777777777777766
Q ss_pred HHhcC---CCChhhHHHHHHHH--HhcC--CHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011236 306 KIKCK---KQLNRDYITMLGSL--VKIG--ELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKK 378 (490)
Q Consensus 306 ~~~~~---~~~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 378 (490)
....+ ..+..+...++.++ ...| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+.
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55421 00244444454442 2223 677777777776554 233222233444677777777777777765543
Q ss_pred C---------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 379 G---------KTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 379 ~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
. -+-|+.++..+|......|+ +|.++++++.+
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 1 01255556455554445555 66777777766
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.21 E-value=9.2e-10 Score=96.20 Aligned_cols=185 Identities=8% Similarity=-0.063 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCC-hhhH
Q 011236 207 NFSYRICINSYGARSELSSMENVLQEMESQSHISMD---WGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKD-ALGY 282 (490)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 282 (490)
...+-.+...+.+.|++++|...|+++. ...+ .+ ...+..+..+|...|++++|+..|++.....+..+. ..++
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l-~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVF-TYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHG-GGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3444445555555666666666666655 3221 11 344555555666666666666666665554332111 2344
Q ss_pred HHHHHHHHh--------cCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHH
Q 011236 283 NHLISHYAS--------LGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNI 354 (490)
Q Consensus 283 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (490)
..+..++.. .|++++|...|++.....+ .+......+... ..+... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~~--------------~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQKI--------------RELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 445555555 5555555555555555443 111111111100 000000 0001345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHH
Q 011236 355 ILLGYSQKGMIEKADAVLKEIVKKGKTP--TPNSWSIIAAGYADK----------NNMEKAFECMKEALA 412 (490)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~ 412 (490)
+...|.+.|++++|...|+++++..+.. ....+..+..+|... |++++|...|+++++
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 6677778888888888888887764331 234566666777655 777888888888877
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.18 E-value=2e-09 Score=82.98 Aligned_cols=125 Identities=14% Similarity=0.180 Sum_probs=50.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCC
Q 011236 285 LISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGM 364 (490)
Q Consensus 285 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (490)
+...+...|++++|..+++.+....+ .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcC
Confidence 33333344444444444443333322 223333333344444444444444444443321 1122333344444444444
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 365 IEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 365 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
+++|...++++.+..+. +..++..+...+...|++++|...+++++.
T Consensus 85 ~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 44444444444443221 333444444444444444444444444443
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=3.2e-09 Score=94.37 Aligned_cols=238 Identities=12% Similarity=0.067 Sum_probs=167.3
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc--C-CcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 011236 154 DESLSLMQKMKEMGSFGSALNYNGIMCLYTNT--G-QHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVL 230 (490)
Q Consensus 154 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 230 (490)
.+|.+++.+.... .++....| .+ + +. + ++++|...|++. ...|...|++++|...|
T Consensus 2 ~~a~~~~~~a~k~-~~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 2 SDPVELLKRAEKK-GVPSSGFM-KL---F-SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CCHHHHHHHHHHH-SSCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred CcHHHHHHHHHHH-hCcCCCcc-hh---c-CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 3567777777665 22222222 22 2 32 2 477888877776 34577889999999999
Q ss_pred HHHHh---CCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCC----hhhHHHHHHHHHhc-CChhHHHHH
Q 011236 231 QEMES---QSHISM-DWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKD----ALGYNHLISHYASL-GNKDEMMKF 301 (490)
Q Consensus 231 ~~~~~---~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~-~~~~~a~~~ 301 (490)
++... +.+-.+ ...+|+.+..+|...|++++|+..|++.....+...+ ..+++.+...|... |++++|+..
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 88761 122212 2568889999999999999999999988765443122 35788899999996 999999999
Q ss_pred HHHHHHhcCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch------hHHHHHHHHHhcCCHHHHHH
Q 011236 302 WGLQKIKCKKQ-L----NRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFR------VPNIILLGYSQKGMIEKADA 370 (490)
Q Consensus 302 ~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~ 370 (490)
|++.....+.. + ..++..+...+.+.|++++|...+++..+........ .+..+..++...|++++|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99887765411 1 3468889999999999999999999999864433221 46677888999999999999
Q ss_pred HHHHHHHcCCC-CC---HHHHHHHHHHHh--ccCCHHHHHHHHHHHHH
Q 011236 371 VLKEIVKKGKT-PT---PNSWSIIAAGYA--DKNNMEKAFECMKEALA 412 (490)
Q Consensus 371 ~~~~m~~~~~~-p~---~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 412 (490)
.|++..+..+. ++ ...+..++.+|. ..+++++|+..|+++..
T Consensus 221 ~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 221 TLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 99998764322 11 113455566664 45778888888877654
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.18 E-value=2.5e-09 Score=82.45 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 011236 245 TYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSL 324 (490)
Q Consensus 245 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 324 (490)
.+..+...+...|++++|..+++++....+ .+...+..+...+...|++++|...++++....+ .+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC--cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHH
Confidence 345566667777777777777777665443 4556666666777777777777777776665544 4455666667777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011236 325 VKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKG 379 (490)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 379 (490)
...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 77777777777777776652 2345566667777777777777777777776643
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.17 E-value=1.6e-09 Score=90.86 Aligned_cols=159 Identities=15% Similarity=0.047 Sum_probs=80.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHH----------------HHHHHHhcCChhHHHHHHHHHHHhcCC
Q 011236 248 TVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNH----------------LISHYASLGNKDEMMKFWGLQKIKCKK 311 (490)
Q Consensus 248 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~ 311 (490)
.....+...|++++|+..|++.....+ .+...|.. +..+|...|++++|...|++.....+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p- 85 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNI--DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP- 85 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCH--HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC--CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-
Confidence 344455666777777777776665443 23334433 55555566666666666665555544
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHH
Q 011236 312 QLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGM--IEKADAVLKEIVKKGKTPTPNSWSI 389 (490)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~ 389 (490)
.+...+..+..++...|++++|...|++..+.. +.+...+..+...|...|+ .+.+...++.... +.|....+..
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~ 162 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYR 162 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHH
Confidence 445555555556666666666666666655542 1234445555555444332 2233333333321 1112222333
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH
Q 011236 390 IAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 390 l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
...++...|++++|...|+++++
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444455566666666666655
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=2.3e-09 Score=93.60 Aligned_cols=208 Identities=11% Similarity=-0.085 Sum_probs=138.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC-CCC-hhhH
Q 011236 241 MDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKD-ALGYNHLISHYASLGNKDEMMKFWGLQKIKCK-KQL-NRDY 317 (490)
Q Consensus 241 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-~~~~ 317 (490)
.+...+-.+...+.+.|++++|+..|+++....+..+. ...+..+..+|...|++++|...|+......+ .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34566666777888888888888888888776542111 56777788888888888888888888877755 222 3456
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011236 318 ITMLGSLVK--------IGELEEAEKMLEEWELSCYCYD-FRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWS 388 (490)
Q Consensus 318 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 388 (490)
..+..++.. .|++++|...|+++.+. .|+ ......+. .+..+... -...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHHH----HHHHHH
Confidence 667777777 78888888888887775 232 22222111 11111110 011256
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcC----------CCHHHHHHHHHHHHhcccc--
Q 011236 389 IIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDN----------RDVEEVEAFVSSLKIKVQK-- 456 (490)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~-- 456 (490)
.+...|.+.|++++|+..|+++++..| .-......+..+..++... |++++|...++++.+..|.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYP---DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT---TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 778889999999999999999998432 1111235677777888765 8999999999999998887
Q ss_pred --hhhhHHHHHHHHhcC
Q 011236 457 --RNMYHALTEAHIRSG 471 (490)
Q Consensus 457 --~~~~~~l~~~~~~~g 471 (490)
......+...+.+.+
T Consensus 230 ~~~~a~~~l~~~~~~~~ 246 (261)
T 3qky_A 230 LLRTAEELYTRARQRLT 246 (261)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 344455555544444
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=9.8e-10 Score=109.62 Aligned_cols=172 Identities=9% Similarity=-0.074 Sum_probs=109.9
Q ss_pred HHcCCHHHHHHHHHHHh--------hhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 011236 254 IIAGLKEKAIIYLKKCE--------DIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLV 325 (490)
Q Consensus 254 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 325 (490)
...|++++|++.+++.. ...+ .+...+..+..++...|++++|...|++.....+ .+...+..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS--ESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT--TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc--cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHH
Confidence 55667777777777665 3222 4556666667777777777777777776666654 45566666777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 011236 326 KIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFE 405 (490)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 405 (490)
..|++++|...|++..+.. +-+...+..+..+|.+.|++++ ...|++.++.++. +...|..+..++.+.|++++|++
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777776652 2245566667777777777777 7777777766544 56667777777777777777777
Q ss_pred HHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCC
Q 011236 406 CMKEALAVHEENKFWRPKP-SLVSSILDWLGDNR 438 (490)
Q Consensus 406 ~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 438 (490)
.|+++++ +.|+. ..+..+..++...|
T Consensus 556 ~~~~al~-------l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 556 TLDEVPP-------TSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHTSCT-------TSTTHHHHHHHHHHHTC---
T ss_pred HHHhhcc-------cCcccHHHHHHHHHHHHccC
Confidence 7777655 33543 45555555554433
No 97
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.14 E-value=2e-08 Score=95.64 Aligned_cols=200 Identities=13% Similarity=0.013 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011236 260 EKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEE 339 (490)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 339 (490)
+.+..+|+++....+ .+...|...+..+...|+.+.|..+|++.... + .+...+.. |....+.++. ++.
T Consensus 196 ~Rv~~~ye~al~~~p--~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~~----y~~~~e~~~~---~~~ 264 (493)
T 2uy1_A 196 SRMHFIHNYILDSFY--YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSLY----YGLVMDEEAV---YGD 264 (493)
T ss_dssp HHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHH----HHHHTTCTHH---HHH
T ss_pred HHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHHH----HHhhcchhHH---HHH
Confidence 446677887776555 45677777777777888888888888887777 3 23222221 2221111111 222
Q ss_pred HHhcC------------CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHHHHHH
Q 011236 340 WELSC------------YCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD-KNNMEKAFEC 406 (490)
Q Consensus 340 ~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~ 406 (490)
+.+.- ......+|...+..+.+.+..+.|..+|++. .. ...+...|......-.. .++.+.|..+
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 22110 0011234566666666677788888888888 32 22244444432222222 2368888888
Q ss_pred HHHHHHhhhcCcCCCcc-hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHhcC--CcHHHHHHHHH
Q 011236 407 MKEALAVHEENKFWRPK-PSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQKRNMYHALTEAHIRSG--QEVDGLLESMK 482 (490)
Q Consensus 407 ~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~ 482 (490)
|+.+++.. |+ +..+...+....+.|+.+.|..+|+++.+ ....|...+..=...| +.+..+++++.
T Consensus 343 fe~al~~~-------~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 343 FSSGLLKH-------PDSTLLKEEFFLFLLRIGDEENARALFKRLEK---TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC---BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888722 32 34455566666777888888888888621 1667777777666677 55666676665
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=2.6e-09 Score=89.66 Aligned_cols=168 Identities=8% Similarity=-0.087 Sum_probs=130.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHhc
Q 011236 280 LGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYIT----------------MLGSLVKIGELEEAEKMLEEWELS 343 (490)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~ 343 (490)
..+......+...|++++|...|+......+ .+...+.. +..++.+.|++++|...+++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344556677889999999999998888765 44556666 889999999999999999999986
Q ss_pred CCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHHhhhcCcCCC
Q 011236 344 CYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNN--MEKAFECMKEALAVHEENKFWR 421 (490)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 421 (490)
. +-+...+..+...|...|++++|...|++.++..+. +..+|..+...|...|+ ...+...++.... ..
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~-------~~ 154 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-------PT 154 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-------CC
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-------CC
Confidence 3 336778899999999999999999999999998765 78889999988876654 3445556655543 22
Q ss_pred cchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccch
Q 011236 422 PKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQKR 457 (490)
Q Consensus 422 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 457 (490)
|....+.....++...|++++|...|+++.+..|..
T Consensus 155 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 155 KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 333344555666777899999999999999998873
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.13 E-value=6.8e-08 Score=85.13 Aligned_cols=218 Identities=8% Similarity=0.009 Sum_probs=140.0
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhc--CHHHHHHHHHHccccCC-ChhHHHHHHHHH----Hhc---CCh
Q 011236 84 RFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVR--GLESAETYFNSLNDEDK-VDKLYGALLNCY----VRE---GLV 153 (490)
Q Consensus 84 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p-~~~~~~~li~~~----~~~---g~~ 153 (490)
..++|+++++.++..+ |-....++.--.++...| ++++++.+++.+....| +..+|+.--..+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3457888888888876 345555666666666677 88888888888888776 566676654444 444 678
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcC--cHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------hHH
Q 011236 154 DESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHE--KIPDVLLDMKENGVPPDNFSYRICINSYGARSE------LSS 225 (490)
Q Consensus 154 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------~~~ 225 (490)
++++.+++.+.+...+ |..+|+--.-.+.+.|.++ ++++.++.+.+.++. |...|+.-.......+. +++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 8888888888877655 7777777666677777777 777788887775442 55566555444444444 566
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhhhh--ccCCChhhHHHHHHHHHhcCChhHHHHHH
Q 011236 226 MENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEK-AIIYLKKCEDIV--SKSKDALGYNHLISHYASLGNKDEMMKFW 302 (490)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 302 (490)
+++.++++. ..++ -|...|+.+...+.+.|+... +..+..++...+ .+ .+...+..+...|.+.|+.++|.+++
T Consensus 205 El~~~~~aI-~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 205 ELNYVKDKI-VKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQV-TSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHH-HHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEE-SCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHH-HhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 666666665 4444 556666666666666665333 334555444332 12 45566666666666666666666666
Q ss_pred HHHHH
Q 011236 303 GLQKI 307 (490)
Q Consensus 303 ~~~~~ 307 (490)
+.+..
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65544
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.11 E-value=2.7e-10 Score=90.02 Aligned_cols=142 Identities=14% Similarity=0.100 Sum_probs=97.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 011236 321 LGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNM 400 (490)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 400 (490)
...+...|++++|...++...... +-+...+..+...|.+.|++++|...|++.++..+. +..+|..+..+|.+.|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 334455667777777777765531 112344556777778888888888888888777655 677788888888888888
Q ss_pred HHHHHHHHHHHHhhhcCcCCCcc-hhhHHHHHHHHHcCCCHHHHHH-HHHHHHhcccc-hhhhHHHHHHHHhcC
Q 011236 401 EKAFECMKEALAVHEENKFWRPK-PSLVSSILDWLGDNRDVEEVEA-FVSSLKIKVQK-RNMYHALTEAHIRSG 471 (490)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~-~~~~~~l~~~~~~~g 471 (490)
++|+..|+++++ +.|+ ...+..+...+.+.|++++|.+ +++++.+..|. +.+|......+...|
T Consensus 82 ~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVE-------LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 888888888877 3354 3667777777777777765544 45777777777 777777777776666
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.10 E-value=4.2e-09 Score=105.08 Aligned_cols=175 Identities=11% Similarity=-0.082 Sum_probs=147.1
Q ss_pred hccCChHHHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHH
Q 011236 218 GARSELSSMENVLQEMESQ-------SHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYA 290 (490)
Q Consensus 218 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (490)
...|++++|++.+++.. + ..-+.+...+..+..+|...|++++|+..|+++.+..+ .+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al-~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAAR-HGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG--WRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHH-TC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhh-hhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc--chHHHHHHHHHHHH
Confidence 77899999999999986 1 22235567888899999999999999999999998776 68889999999999
Q ss_pred hcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 011236 291 SLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADA 370 (490)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 370 (490)
..|++++|...|++.....+ .+...+..+..++.+.|++++ .+.|++..+.. +.+...|..+..+|.+.|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988876 677888999999999999999 99999998863 3356788899999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 011236 371 VLKEIVKKGKTPTPNSWSIIAAGYADKNN 399 (490)
Q Consensus 371 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 399 (490)
.|++..+.++. +...|..+..++...++
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 99999886543 46778888888877665
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.10 E-value=1.3e-08 Score=86.49 Aligned_cols=194 Identities=8% Similarity=-0.097 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCCh--hhHH
Q 011236 242 DWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKD-ALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLN--RDYI 318 (490)
Q Consensus 242 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 318 (490)
+...+..+...+...|++++|+..|+++....+..+. ...+..+..++.+.|++++|+..|++.....+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666778899999999999999998876553121 356778888999999999999999988887663221 2444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH------------
Q 011236 319 TMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNS------------ 386 (490)
Q Consensus 319 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~------------ 386 (490)
.+..++...+.. .+ ..|..+...+...|++++|...|+++++..+. +...
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHH
Confidence 455555442110 00 00111112222334444444444444443221 1111
Q ss_pred -----HHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 387 -----WSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 387 -----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
...+...|.+.|++++|+..|+++++..| +.......+..+..++.+.|++++|.+.++.+...+|.
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP---DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc---CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 13456677888888888888888887332 11111246777888888888888888888888887776
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.10 E-value=8.7e-08 Score=84.44 Aligned_cols=232 Identities=6% Similarity=-0.094 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhhccCCChhhHHHHHHHH----Hhc---CC
Q 011236 224 SSMENVLQEMESQSHISMDWGTYSTVANYYIIAG--LKEKAIIYLKKCEDIVSKSKDALGYNHLISHY----ASL---GN 294 (490)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 294 (490)
++|+.+++.+. ..++ -...+|+.--.++...| ++++++..++.+....+ .+..+|+.-...+ ... ++
T Consensus 50 ~~aL~~t~~~L-~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP--k~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGI-NELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE--KNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT--TCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHH-HHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc--ccHHHHHHHHHHHHHHHHhccccCC
Confidence 45666666655 3333 33444555555555555 66666666666666554 3444554444333 333 56
Q ss_pred hhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCC------HH
Q 011236 295 KDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELE--EAEKMLEEWELSCYCYDFRVPNIILLGYSQKGM------IE 366 (490)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 366 (490)
+++++.+++.+....+ -+..+|+.-...+.+.|.++ ++.+.++++.+..+ -|...|+.-...+.+.++ ++
T Consensus 126 ~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHH
Confidence 6666666666666554 55556665555555666665 66677777666532 245555555555555554 78
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHH
Q 011236 367 KADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEK-AFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEA 445 (490)
Q Consensus 367 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 445 (490)
++++.+++++...+. |...|+.+...+.+.|+... +..+..+..+.. ..-..++..+..+...+.+.|+.++|.+
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE---KDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG---GTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc---CCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 888888888888766 88888888888877777444 445665555411 0112455778888888888888899999
Q ss_pred HHHHHHh-cccc-hhhhHHHHH
Q 011236 446 FVSSLKI-KVQK-RNMYHALTE 465 (490)
Q Consensus 446 ~~~~~~~-~~~~-~~~~~~l~~ 465 (490)
+++.+.+ .+|. ...|+..+.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHHh
Confidence 9988886 5776 666766554
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.08 E-value=1.2e-09 Score=86.30 Aligned_cols=143 Identities=6% Similarity=-0.134 Sum_probs=86.7
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 011236 251 NYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGEL 330 (490)
Q Consensus 251 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 330 (490)
..+...|++++|+..+.......+ .+...+..+...|.+.|++++|.+.|++.+...+ .+..+|..+..++.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p--~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPR--QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHH--HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcccCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCch
Confidence 344455666666666666655443 3445555666667777777777777776666654 4566666677777777777
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHhccC
Q 011236 331 EEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAV-LKEIVKKGKTPTPNSWSIIAAGYADKN 398 (490)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~~~p~~~~~~~l~~~~~~~~ 398 (490)
++|...|++..+.. +-+...+..+...|.+.|++++|... +++.++..+. ++.+|......+...|
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 77777777766642 22445666666667777776554443 4666665443 5556665555555554
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.07 E-value=3.1e-09 Score=86.58 Aligned_cols=162 Identities=11% Similarity=-0.021 Sum_probs=105.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHH-H
Q 011236 246 YSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGS-L 324 (490)
Q Consensus 246 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 324 (490)
+..+...+...|++++|+..|++.....+ .+...+..+..++...|++++|...++......+ +...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ--SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH--TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 34456677777888888888877776655 5667777777777788888888887776655443 33322222111 1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHH
Q 011236 325 VKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTP-TPNSWSIIAAGYADKNNMEKA 403 (490)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 403 (490)
...++...+...+++..+.. +.+...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12222334566777776642 2245667777777788888888888888777765443 345677777777778888888
Q ss_pred HHHHHHHHH
Q 011236 404 FECMKEALA 412 (490)
Q Consensus 404 ~~~~~~~~~ 412 (490)
...|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877777654
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=5.5e-08 Score=82.63 Aligned_cols=187 Identities=5% Similarity=-0.092 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCCh-hhH
Q 011236 206 DNFSYRICINSYGARSELSSMENVLQEMESQSHIS-M-DWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDA-LGY 282 (490)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 282 (490)
+...+..+...+...|++++|...|+++. ...+. + ....+..+..+|.+.|++++|+..|+++.+..+..+.. .++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALD-NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 34455667788899999999999999998 43221 2 24677789999999999999999999999876642221 245
Q ss_pred HHHHHHHHh------------------cCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011236 283 NHLISHYAS------------------LGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSC 344 (490)
Q Consensus 283 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 344 (490)
..+..++.. .|++++|...|++.....+ .+.......... ..+...+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P-~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP-NSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT-TCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc-CChhHHHHHHHH----------HHHHHHHH---
Confidence 555555544 3455666666665555443 111121111100 00000000
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 345 YCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPT--PNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
.....+...|.+.|++++|...|+++++..+... ...+..+..+|.+.|+.++|.+.++.+..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 0112456678899999999999999998754311 24688889999999999999999998887
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.04 E-value=5.9e-09 Score=102.16 Aligned_cols=152 Identities=9% Similarity=-0.044 Sum_probs=98.5
Q ss_pred cCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011236 256 AGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEK 335 (490)
Q Consensus 256 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 335 (490)
.|++++|+..|++..+..+ .+...+..+...+...|++++|.+.+++.....+ .+...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP--QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4677788888887766554 4667777777788888888888888887766654 456677777777778888888888
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHHHH
Q 011236 336 MLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADK---NNMEKAFECMKEALA 412 (490)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 412 (490)
.+++..+.. +.+...+..+...|.+.|++++|...+++..+..+. +...+..+...+... |+.++|.+.++++++
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 888777752 234566777777777888888888888877776544 566777777777777 778888888887777
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.03 E-value=7.5e-09 Score=91.59 Aligned_cols=162 Identities=7% Similarity=-0.087 Sum_probs=82.8
Q ss_pred hhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchH-HHHHHH
Q 011236 104 VHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNY-NGIMCL 181 (490)
Q Consensus 104 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~ 181 (490)
...+..+...+...|++++|...|++.....| +..++..+...+.+.|++++|...++++.... |+.... ......
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHH
Confidence 34444444555555555555555555555554 34555555555555666666665555554442 222211 111222
Q ss_pred HHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHcCCHH
Q 011236 182 YTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHIS-MDWGTYSTVANYYIIAGLKE 260 (490)
Q Consensus 182 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~ 260 (490)
+...++.+.|...+++..+... .+...+..+...+...|++++|...|+++. +.+.. .+...+..++..|...|+.+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l-~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHL-RXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHH-hcccccccchHHHHHHHHHHHcCCCC
Confidence 4444555555555555555321 244455555566666666666666666555 22221 12445555666666666666
Q ss_pred HHHHHHHHH
Q 011236 261 KAIIYLKKC 269 (490)
Q Consensus 261 ~a~~~~~~~ 269 (490)
+|...|++.
T Consensus 273 ~a~~~~r~a 281 (287)
T 3qou_A 273 ALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 666555554
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.02 E-value=3.6e-09 Score=86.19 Aligned_cols=162 Identities=12% Similarity=0.046 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHH-
Q 011236 280 LGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLG- 358 (490)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 358 (490)
..+......+...|++++|...|++.....+ .+...+..+...+...|++++|...++.+.... |+...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 3455666777788888888888887776655 566777888888888888888888888876642 333332222211
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc---hhhHHHHHHHHH
Q 011236 359 YSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK---PSLVSSILDWLG 435 (490)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 435 (490)
+...+...+|...+++..+..+. +...+..+...+...|++++|...|+++++ ..|+ ...+..+...+.
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-------~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILK-------VNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCTTTTTTHHHHHHHHHHH
T ss_pred HHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------hCcccChHHHHHHHHHHHH
Confidence 12222334567777777776544 677778888888888888888888888877 2343 346777777788
Q ss_pred cCCCHHHHHHHHHHHHh
Q 011236 436 DNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 436 ~~g~~~~a~~~~~~~~~ 452 (490)
..|+.++|...|++...
T Consensus 156 ~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 156 ALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHCSSCHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHH
Confidence 88888888877776543
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.02 E-value=1.7e-08 Score=90.43 Aligned_cols=232 Identities=10% Similarity=-0.005 Sum_probs=156.7
Q ss_pred cCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011236 185 TGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAII 264 (490)
Q Consensus 185 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 264 (490)
.|++++|.+++++..+... .. .+...++++.|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHH
Confidence 4566777777777655311 10 011146777777776654 456778899999999
Q ss_pred HHHHHhhhhccCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCC---CC--hhhHHHHHHHHHhcCCHHHHHH
Q 011236 265 YLKKCEDIVSKSKD----ALGYNHLISHYASLGNKDEMMKFWGLQKIKCKK---QL--NRDYITMLGSLVKIGELEEAEK 335 (490)
Q Consensus 265 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~a~~ 335 (490)
.|.+.........+ ..+|+.+...|...|++++|+..|++....... +. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99887654432112 357888888999999999999999877665321 11 3567788888888 99999999
Q ss_pred HHHHHHhcCCCC-----CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCC-HHHHHHHHHHHhccCCHHHHHH
Q 011236 336 MLEEWELSCYCY-----DFRVPNIILLGYSQKGMIEKADAVLKEIVKKGK----TPT-PNSWSIIAAGYADKNNMEKAFE 405 (490)
Q Consensus 336 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~----~p~-~~~~~~l~~~~~~~~~~~~a~~ 405 (490)
.+++..+..... ...+++.+...|.+.|++++|+..|++..+... .+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999887642111 135677888899999999999999998876421 111 2356677778888899999999
Q ss_pred HHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHH
Q 011236 406 CMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAF 446 (490)
Q Consensus 406 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 446 (490)
.|++++ ..|.... .........++.++ ..|+.+.+..+
T Consensus 217 ~~~~al-~~p~~~~-~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSG-SEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTT-SHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCC-CHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999987 5532111 11123455566655 56777766663
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.01 E-value=1.3e-08 Score=90.08 Aligned_cols=161 Identities=11% Similarity=0.038 Sum_probs=68.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHH-HHHHHH
Q 011236 281 GYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPN-IILLGY 359 (490)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~ 359 (490)
.+..+...+...|++++|...|++.....+ .+...+..+...+.+.|++++|...++++... .|+..... .....+
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHH
Confidence 333444444444444444444444444433 33344444444444444444444444444332 12211111 111123
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCC
Q 011236 360 SQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRD 439 (490)
Q Consensus 360 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 439 (490)
.+.++.++|...+++..+..+. +...+..+...+...|++++|+..|+++++..|+ ..+...+..++..+...|+
T Consensus 196 ~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~----~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLT----AADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----GGGGHHHHHHHHHHHHHCT
T ss_pred HhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc----cccchHHHHHHHHHHHcCC
Confidence 3344444445555554444332 4444555555555555555555555555441110 0112344444445555555
Q ss_pred HHHHHHHHHH
Q 011236 440 VEEVEAFVSS 449 (490)
Q Consensus 440 ~~~a~~~~~~ 449 (490)
.++|...+++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 5554444443
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.01 E-value=1.5e-08 Score=90.74 Aligned_cols=219 Identities=8% Similarity=-0.049 Sum_probs=155.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHH
Q 011236 220 RSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMM 299 (490)
Q Consensus 220 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 299 (490)
.|++++|.+++++.. +... .. + +...++++.|...|.+. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~-k~~~-~~------~---~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAE-KYLK-TS------F---MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHH-HHHC-CC------S---SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHH-HHcc-cc------c---cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence 567778888887765 2111 11 0 11146777777776653 45677889999999
Q ss_pred HHHHHHHHhcCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C--CchhHHHHHHHHHhcCCHHHHH
Q 011236 300 KFWGLQKIKCKK-QL----NRDYITMLGSLVKIGELEEAEKMLEEWELSCYC---Y--DFRVPNIILLGYSQKGMIEKAD 369 (490)
Q Consensus 300 ~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~ 369 (490)
..|.+....... .+ ..+|..+...|.+.|++++|...+++..+.-.. + -..+++.+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999877665431 11 347888899999999999999999987654111 1 13467778888988 9999999
Q ss_pred HHHHHHHHcCCCC-C----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHH
Q 011236 370 AVLKEIVKKGKTP-T----PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEV 443 (490)
Q Consensus 370 ~~~~~m~~~~~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a 443 (490)
..|++.++..... + ..++..+...|.+.|++++|+..|++++...++... .+.. ..+..+...+...|++++|
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN-YPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999987642211 1 457889999999999999999999999985542221 2222 3666777788888999999
Q ss_pred HHHHHHHHhcccc------hhhhHHHHHHHH
Q 011236 444 EAFVSSLKIKVQK------RNMYHALTEAHI 468 (490)
Q Consensus 444 ~~~~~~~~~~~~~------~~~~~~l~~~~~ 468 (490)
...|++.. ..|. ......++.++.
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~~ 244 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAYD 244 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHHH
Confidence 99999998 7765 233555666664
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.00 E-value=1.4e-07 Score=83.86 Aligned_cols=169 Identities=11% Similarity=-0.028 Sum_probs=118.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcC-CCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----hhHH
Q 011236 284 HLISHYASLGNKDEMMKFWGLQKIKCK-KQLNR----DYITMLGSLVKIGELEEAEKMLEEWELSCYCYDF-----RVPN 353 (490)
Q Consensus 284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~ 353 (490)
..+..+...|++++|..+++....... .|+.. .+..+...+...|++++|...++++.+.....+. .+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345667778888888888887766433 12211 2334666667778888888888888874322222 2578
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhH
Q 011236 354 IILLGYSQKGMIEKADAVLKEIVKK-----GKTPT-PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLV 427 (490)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~ 427 (490)
.+...|...|++++|...|+++.+. +..+. ..+|..+...|.+.|++++|...++++++..+.......-..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888899999999999998888741 11112 23788888999999999999999999887554332222225678
Q ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHh
Q 011236 428 SSILDWLGDNR-DVEEVEAFVSSLKI 452 (490)
Q Consensus 428 ~~l~~~~~~~g-~~~~a~~~~~~~~~ 452 (490)
..+..++.+.| ++++|...++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888999999 46999988887765
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=1.5e-08 Score=99.34 Aligned_cols=154 Identities=8% Similarity=-0.055 Sum_probs=102.5
Q ss_pred cCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011236 185 TGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAII 264 (490)
Q Consensus 185 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 264 (490)
.|++++|.+.|++..+... .+...+..+...+...|++++|.+.|++.. +.+. .+...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGL-ALHP-GHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TTST-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4677888888887766422 346677777788888888888888888887 5544 456777778888888888888888
Q ss_pred HHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 011236 265 YLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKI---GELEEAEKMLEEWE 341 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~ 341 (490)
.|++..+..+ .+...+..+..+|...|++++|.+.|++.....+ .+...+..+...+... |+.++|.+.+++..
T Consensus 79 ~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAAP--EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 8888777654 4667778888888888888888888887777655 5566777777777777 88888888888877
Q ss_pred hcC
Q 011236 342 LSC 344 (490)
Q Consensus 342 ~~~ 344 (490)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 763
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.99 E-value=2.4e-07 Score=88.28 Aligned_cols=340 Identities=11% Similarity=-0.016 Sum_probs=192.4
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCC-hhHHHHHHHHH
Q 011236 85 FKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGL-VDESLSLMQKM 163 (490)
Q Consensus 85 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m 163 (490)
+..|..+|+.+...- |. |+++.+..+|+.....-|+...|...+....+.++ .+....+|+..
T Consensus 11 i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~a 74 (493)
T 2uy1_A 11 LSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFT 74 (493)
T ss_dssp -CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHH
T ss_pred hHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 666666666666543 11 77888888888777766777777777776666553 34455666665
Q ss_pred Hhc-CCCC-CcchHHHHHHHHH----hcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCC
Q 011236 164 KEM-GSFG-SALNYNGIMCLYT----NTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQS 237 (490)
Q Consensus 164 ~~~-~~~p-~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 237 (490)
... |..| +...|...+..+. ..++.+.+.++|+..+......-...|...... .+..+...+..++.+.
T Consensus 75 l~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~---- 149 (493)
T 2uy1_A 75 LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDT---- 149 (493)
T ss_dssp HHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH----
T ss_pred HHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHH----
Confidence 543 3222 4445555554433 124455666666666652111001111111111 1111111122221111
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcC-C------hhHHHHHHHHHHHhcC
Q 011236 238 HISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLG-N------KDEMMKFWGLQKIKCK 310 (490)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~------~~~a~~~~~~~~~~~~ 310 (490)
.+.+..|..+++.+...... .+...|...+..-...+ . .+.+..+|++++...+
T Consensus 150 ------------------~~~y~~ar~~y~~~~~~~~~-~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p 210 (493)
T 2uy1_A 150 ------------------LPIFQSSFQRYQQIQPLIRG-WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY 210 (493)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHT-CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ------------------hHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC
Confidence 12344555556655543332 34456666555533221 1 3456788998888765
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CC
Q 011236 311 KQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKG---------KT 381 (490)
Q Consensus 311 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---------~~ 381 (490)
.....|...+.-+.+.|+.+.|..+++..... +.+...+. .|....+.++. ++.+.+.- ..
T Consensus 211 -~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~ 280 (493)
T 2uy1_A 211 -YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKV 280 (493)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhh
Confidence 55778888888888999999999999999987 33333332 23332222222 33332210 00
Q ss_pred C---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHc-CCCHHHHHHHHHHHHhcccc-
Q 011236 382 P---TPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGD-NRDVEEVEAFVSSLKIKVQK- 456 (490)
Q Consensus 382 p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~- 456 (490)
+ ....|...+....+.++.+.|..+|+++ . . .+ .+...|......-.. .++.+.|..+|+...+..|.
T Consensus 281 ~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~---~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~ 353 (493)
T 2uy1_A 281 FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-N---EG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS 353 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-T---SC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-C---CC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC
Confidence 1 1245777777777788899999999999 4 1 22 233444332222222 33699999999999998877
Q ss_pred hhhhHHHHHHHHhcC--CcHHHHHHHH
Q 011236 457 RNMYHALTEAHIRSG--QEVDGLLESM 481 (490)
Q Consensus 457 ~~~~~~l~~~~~~~g--~~a~~~~~~m 481 (490)
+..|...++...+.| +.|..+|++.
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777888777888 7788887764
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.92 E-value=2.2e-07 Score=82.52 Aligned_cols=211 Identities=6% Similarity=-0.153 Sum_probs=140.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 011236 194 VLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWG---TYSTVANYYIIAGLKEKAIIYLKKCE 270 (490)
Q Consensus 194 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~ 270 (490)
.+..+......|+..+...+...+.-.- + .++. .. ...+.. .+...+..+...|++++|..++++..
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~--~---~~~~----~~-~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l 102 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPI--I---HFYE----VL-IYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNEL 102 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCT--H---HHHH----TT-TSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCH--H---HHhC----CC-CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3444444334577766666666554221 1 1111 11 112222 23334677888899999999998887
Q ss_pred hhhccCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHhcC-CCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011236 271 DIVSKSKDA----LGYNHLISHYASLGNKDEMMKFWGLQKIKCK-KQLN----RDYITMLGSLVKIGELEEAEKMLEEWE 341 (490)
Q Consensus 271 ~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (490)
......++. ..+..+...+...|++++|+..+++...... .++. .+++.+...|...|++++|...++++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 103 KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 644321221 1233466677778899999999998887433 2222 268888899999999999999999887
Q ss_pred hc-----CCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCC-HHHHHHHHHH
Q 011236 342 LS-----CYCY-DFRVPNIILLGYSQKGMIEKADAVLKEIVKK----GKTPT-PNSWSIIAAGYADKNN-MEKAFECMKE 409 (490)
Q Consensus 342 ~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~-~~~a~~~~~~ 409 (490)
+. +..+ ...++..+...|.+.|++++|...+++.++. +..+. ..+|..+..+|.+.|+ +++|.+.+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 42 1111 1236788899999999999999999988753 22222 5689999999999995 6999999999
Q ss_pred HHHhh
Q 011236 410 ALAVH 414 (490)
Q Consensus 410 ~~~~~ 414 (490)
++...
T Consensus 263 Al~i~ 267 (293)
T 3u3w_A 263 ASFFF 267 (293)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98733
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.89 E-value=4.2e-08 Score=74.57 Aligned_cols=107 Identities=13% Similarity=0.008 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc-hhhHHH
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK-PSLVSS 429 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ 429 (490)
.+......|.+.|++++|+..|++.++..+. +..+|..+..+|.+.|++++|+..++++++. .|+ ...|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~a~~~ 86 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRL-------DSKFIKGYIR 86 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-------hhhhhHHHHH
Confidence 3444555666666666666666666665543 5666666666666666666666666666662 233 355666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHH
Q 011236 430 ILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTE 465 (490)
Q Consensus 430 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~ 465 (490)
+..++...|++++|.+.|++..+..|. ...+..|..
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 666666666666666666666666666 555554443
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.89 E-value=7.9e-08 Score=80.73 Aligned_cols=160 Identities=12% Similarity=0.061 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC----CcCcHHHHHHHHHHCCCCCCHHHHHHHH
Q 011236 139 LYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTG----QHEKIPDVLLDMKENGVPPDNFSYRICI 214 (490)
Q Consensus 139 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~~~~~li 214 (490)
++..|...|...+++++|+..|++..+.| ++..+..|...|.. + ++++|.+.|++..+.| +...+..|.
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 33444444444444444444444444432 33333444444433 3 4444444444444332 233333444
Q ss_pred HHHhc----cCChHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhhccCCChhhHHHH
Q 011236 215 NSYGA----RSELSSMENVLQEMESQSHIS-MDWGTYSTVANYYII----AGLKEKAIIYLKKCEDIVSKSKDALGYNHL 285 (490)
Q Consensus 215 ~~~~~----~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 285 (490)
..|.. .+++++|...|++.. +.+.. .....+..|...|.. .+++++|+..|++....+ .+...+..|
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~-~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~~a~~~L 168 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAA-RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS---RTGYAEYWA 168 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHT-SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS---CTTHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHH-HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC---CCHHHHHHH
Confidence 44433 445555555555544 33210 013444444444444 445555555555544331 222334444
Q ss_pred HHHHHhc-C-----ChhHHHHHHHHHHHhc
Q 011236 286 ISHYASL-G-----NKDEMMKFWGLQKIKC 309 (490)
Q Consensus 286 ~~~~~~~-~-----~~~~a~~~~~~~~~~~ 309 (490)
...|... | +.++|...|+.....+
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4444322 1 4555555555444443
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.89 E-value=1.3e-07 Score=79.44 Aligned_cols=125 Identities=17% Similarity=-0.040 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh
Q 011236 282 YNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQ 361 (490)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (490)
+..+...+...|++++|...|++.. .|+...+..+...+...|++++|...+++..+.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555555566666666555432 2344555555555555555555555555555542 2234445555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 362 KGMIEKADAVLKEIVKKGKTPTP----------------NSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 362 ~g~~~~A~~~~~~m~~~~~~p~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
.|++++|...|++..+.... +. ..+..+..+|...|++++|...|+++++
T Consensus 84 ~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555555555555554322 11 4455555555555555555555555554
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.88 E-value=3.4e-07 Score=76.84 Aligned_cols=177 Identities=8% Similarity=0.003 Sum_probs=112.1
Q ss_pred HHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC----CHHHHHHHH
Q 011236 262 AIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIG----ELEEAEKML 337 (490)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 337 (490)
|.+.|++..+. .+..++..+...|...+++++|...|++.... .+...+..+...|.. + ++++|...|
T Consensus 5 A~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 5 PGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ---GDGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp TTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 44445544432 34455666666666666666676666665543 244555555555555 5 677777777
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhc----cCCHHHHHHHHH
Q 011236 338 EEWELSCYCYDFRVPNIILLGYSQ----KGMIEKADAVLKEIVKKGKT-PTPNSWSIIAAGYAD----KNNMEKAFECMK 408 (490)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~----~~~~~~a~~~~~ 408 (490)
++..+.| +...+..|...|.. .+++++|...|++..+.|.. .++..+..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776543 34455666666665 67788888888877776531 025667777777777 677888888888
Q ss_pred HHHHhhhcCcCCCcchhhHHHHHHHHHcC-C-----CHHHHHHHHHHHHhcccc
Q 011236 409 EALAVHEENKFWRPKPSLVSSILDWLGDN-R-----DVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 409 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~ 456 (490)
++.+ . ..+...+..|...|... | +.++|..+|++..+.+..
T Consensus 154 ~A~~-----~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSS-----L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHH-----T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHH-----c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 8877 2 23445566666666542 2 788888888887776654
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.87 E-value=6.3e-07 Score=79.49 Aligned_cols=174 Identities=11% Similarity=-0.025 Sum_probs=120.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CC--
Q 011236 279 ALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLN-----RDYITMLGSLVKIGELEEAEKMLEEWELSCYC---YD-- 348 (490)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~-- 348 (490)
...+...+..+...|++++|.+.+............ ..+..+...+...|++++|...+++..+.... +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 344556667777888888888888766665432111 22344556667788899999988888754221 11
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCC-C--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCc
Q 011236 349 FRVPNIILLGYSQKGMIEKADAVLKEIVK---KGKT-P--TPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRP 422 (490)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---~~~~-p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p 422 (490)
..+++.+...|...|++++|...|++..+ .... + ...+|..+...|...|++++|+.+++++++..........
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 33677888889999999999999988873 2111 1 1257888888999999999999999998874422111111
Q ss_pred chhhHHHHHHHHHcCCCHHHH-HHHHHHHHh
Q 011236 423 KPSLVSSILDWLGDNRDVEEV-EAFVSSLKI 452 (490)
Q Consensus 423 ~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 452 (490)
-..+|..+...+.+.|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 246788888899999999999 777776654
No 122
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.87 E-value=3.7e-06 Score=74.54 Aligned_cols=198 Identities=10% Similarity=0.011 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC-HHHHHH
Q 011236 259 KEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLG--NKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGE-LEEAEK 335 (490)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~ 335 (490)
+++++.+++.+....+ .+..+|+.-...+...+ .+++++.+++.+....+ -+...|+.-...+...|. ++++.+
T Consensus 90 l~~EL~~~~~~L~~~P--Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVNP--KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 4556666666665444 45566665555555555 35666666666666554 555555555555555565 466666
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----
Q 011236 336 MLEEWELSCYCYDFRVPNIILLGYSQK--------------GMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADK---- 397 (490)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---- 397 (490)
.++.+.+.. +-|...|+.....+.+. +.++++++.+.+.+...+. |...|+-+-..+.+.
T Consensus 167 ~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 167 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcc
Confidence 666666652 22444555444444433 4578888999998888766 888887666555554
Q ss_pred -------CCHHHHHHHHHHHHHhhhcCcCCCcch-hhHH---HHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHH
Q 011236 398 -------NNMEKAFECMKEALAVHEENKFWRPKP-SLVS---SILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTE 465 (490)
Q Consensus 398 -------~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~ 465 (490)
+.++++++.++++++.. |+. ..+. .+..+....|..+++...+.++.+.+|. ..-|..+..
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~-------pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELE-------PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhC-------cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 45789999999999843 554 1222 2222333568888999999999999998 777777665
Q ss_pred HHH
Q 011236 466 AHI 468 (490)
Q Consensus 466 ~~~ 468 (490)
.+.
T Consensus 318 ~~~ 320 (331)
T 3dss_A 318 KFL 320 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 123
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.87 E-value=3.3e-08 Score=82.40 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKK----GKTP--TPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP 424 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~ 424 (490)
++..+...|...|++++|...+++..+. +..| ....+..+...+...|++++|...+++++...........-.
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444455555555555555555554432 1010 122345555555556666666666655554221111111111
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 425 SLVSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
.++..+...+...|++++|...+++..+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2344555555566666666665555444
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=1.2e-06 Score=78.02 Aligned_cols=174 Identities=10% Similarity=0.014 Sum_probs=115.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhc-CHHHHHHHHHHccccCC-ChhHHHHHHHHHHhc-C-ChhH
Q 011236 80 RSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVR-GLESAETYFNSLNDEDK-VDKLYGALLNCYVRE-G-LVDE 155 (490)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~-g-~~~~ 155 (490)
.+.+..++|+++++.++..+ +-+...++.--.++...| .+++++.+++.+....| +..+|+.-...+.+. + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 34445568888888888887 345556666666666677 58888888888888877 677788777766666 6 7888
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcC--------cHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----
Q 011236 156 SLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHE--------KIPDVLLDMKENGVPPDNFSYRICINSYGARSE----- 222 (490)
Q Consensus 156 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----- 222 (490)
++++++.+.+...+ |..+|+--.-.+.+.|.++ ++++.++++.+..+ -|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccch
Confidence 88888888887655 6777766555555555555 67777777776543 355666666666555554
Q ss_pred --hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCC
Q 011236 223 --LSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGL 258 (490)
Q Consensus 223 --~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 258 (490)
++++++.++++. ..++ -|...|+.+-..+.+.|.
T Consensus 222 ~~~~eELe~~~~aI-~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 222 RSLQDELIYILKSI-HLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHhcCC
Confidence 456666666655 3343 455555555555544443
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.82 E-value=4.3e-07 Score=76.20 Aligned_cols=125 Identities=16% Similarity=-0.009 Sum_probs=70.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Q 011236 248 TVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKI 327 (490)
Q Consensus 248 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 327 (490)
.+...+...|++++|+..|++.. . ++...+..+..++...|++++|...|++.....+ .+...+..+..++...
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHc
Confidence 34445555555555555555542 2 4455555555555555666666655555555443 3445555555555566
Q ss_pred CCHHHHHHHHHHHHhcCCCCCc----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011236 328 GELEEAEKMLEEWELSCYCYDF----------------RVPNIILLGYSQKGMIEKADAVLKEIVKKG 379 (490)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 379 (490)
|++++|...+++..+... .+. ..+..+..+|.+.|++++|...|++..+..
T Consensus 85 ~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLR-GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TCHHHHHHHHHHHHHTTT-TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCC-CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 666666666655555311 111 455666666777777777777777776654
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.81 E-value=2.5e-06 Score=75.98 Aligned_cols=220 Identities=7% Similarity=-0.024 Sum_probs=116.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC-CcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-C-ChHHHH
Q 011236 151 GLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTG-QHEKIPDVLLDMKENGVPPDNFSYRICINSYGAR-S-ELSSME 227 (490)
Q Consensus 151 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g-~~~~a~ 227 (490)
+..++|+++++++...++. +..+|+.--..+...| .+++++++++.+.....+ +..+|+.-..++... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence 3344555555555555433 3444554444444445 355566666555554321 333444333333333 3 556666
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCC-----
Q 011236 228 NVLQEMESQSHISMDWGTYSTVANYYIIAGLKE--------KAIIYLKKCEDIVSKSKDALGYNHLISHYASLGN----- 294 (490)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 294 (490)
++++++. +.+. -+-.+|+.-..++.+.|.++ ++++.++++.+..+ .|..+|+.....+.+.++
T Consensus 146 ~~~~k~L-~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp--~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 146 EYIHGSL-LPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG--RNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHT-SSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHH-HhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhccccccch
Confidence 6666666 4444 45555555444444444444 67777777776555 567777777766666665
Q ss_pred --hhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC-----CCC
Q 011236 295 --KDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGEL--------------------EEAEKMLEEWELSC-----YCY 347 (490)
Q Consensus 295 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~~~ 347 (490)
++++++.+++.+...+ -|...|+.+-..+.+.|.. ........++...+ ..+
T Consensus 222 ~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 5667777776666655 5666666655555554432 12222222222111 023
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011236 348 DFRVPNIILLGYSQKGMIEKADAVLKEIVK 377 (490)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 377 (490)
+......|++.|...|+.++|.++++.+.+
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 444556666666666777777777766654
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.80 E-value=2e-07 Score=70.47 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHH
Q 011236 350 RVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSS 429 (490)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 429 (490)
..+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|..+++++.... ..+..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~ 82 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------CccHHHHHH
Confidence 34455555556666666666666665554322 45555566666666666666666666665511 123345555
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHh
Q 011236 430 ILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIR 469 (490)
Q Consensus 430 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~ 469 (490)
+...+...|++++|...++++.+..|. ...+..+...+..
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 556666666666666666666665555 5555555554443
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.79 E-value=2.1e-07 Score=70.61 Aligned_cols=96 Identities=11% Similarity=-0.036 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011236 315 RDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGY 394 (490)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 394 (490)
..+......|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|+..|++.++.++. +...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 345556666777777777777777776652 335566677777777777777777777777776544 566777777777
Q ss_pred hccCCHHHHHHHHHHHHH
Q 011236 395 ADKNNMEKAFECMKEALA 412 (490)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~ 412 (490)
...|++++|++.|+++++
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 777777777777777777
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.79 E-value=5.3e-08 Score=85.78 Aligned_cols=194 Identities=12% Similarity=-0.012 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC-ChhHHHHHHHH
Q 011236 68 SELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK-VDKLYGALLNC 146 (490)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~ 146 (490)
+...+..+...+...|++++|+..|+...+.. +.++..+..+..++.+.|++++|...++......| +..++..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 55677788888889999999999999988876 45778888888899999999999999999888887 57788889999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 011236 147 YVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSM 226 (490)
Q Consensus 147 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 226 (490)
+...|++++|+..|++..+.+.. +...+...+....+.. +. .-+......-.+.+......+... ..|+.++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIA---KK-KRWNSIEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHH---HH-HHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHH---HH-HHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 99999999999999888765321 1111111111111111 11 112222333344444444433332 25788888
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhh
Q 011236 227 ENVLQEMESQSHISMDWGTYSTVANYYIIA-GLKEKAIIYLKKCED 271 (490)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~ 271 (490)
.+.+++.. +.+. .+......+...+.+. +.+++|.++|.++.+
T Consensus 155 ~~~~~~al-~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNH-EGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGG-TTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhh-cccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88887776 4432 2233333344444444 567788888887655
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.79 E-value=1.2e-07 Score=74.29 Aligned_cols=95 Identities=17% Similarity=0.099 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 011236 316 DYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYA 395 (490)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 395 (490)
.+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|+..|++..+..+. ++..|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 34444555555555555555555555541 223444555555555555555555555555554433 4445555555555
Q ss_pred ccCCHHHHHHHHHHHHH
Q 011236 396 DKNNMEKAFECMKEALA 412 (490)
Q Consensus 396 ~~~~~~~a~~~~~~~~~ 412 (490)
..|++++|...|+++++
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555555
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.78 E-value=1.1e-07 Score=74.68 Aligned_cols=101 Identities=13% Similarity=0.006 Sum_probs=90.0
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc-hhh
Q 011236 348 DFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK-PSL 426 (490)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~ 426 (490)
+...+..+...+.+.|++++|...|+++++..+. +...|..+..+|...|++++|+..|+++++. .|+ +..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-------~P~~~~~ 106 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-------GKNDYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------SSSCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-------CCCCcHH
Confidence 3446777888899999999999999999998765 8889999999999999999999999999983 354 478
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 427 VSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 427 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
|..+..++...|++++|...|+++.+..|+
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 889999999999999999999999998876
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.77 E-value=2.1e-07 Score=71.32 Aligned_cols=115 Identities=12% Similarity=-0.005 Sum_probs=71.6
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHH
Q 011236 349 FRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVS 428 (490)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~ 428 (490)
...+..+...+.+.|++++|...|++..+..+. +...+..+...+...|++++|...++++++.. ..+...+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~ 88 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE------PTFIKGYT 88 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC------TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CCchHHHH
Confidence 344555666666666777777666666665433 55666666666667777777777777766622 12345566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhc
Q 011236 429 SILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRS 470 (490)
Q Consensus 429 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 470 (490)
.+...+...|++++|.+.+++..+..|. ...+..+...+...
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 6666666777777777777766666666 55666665555443
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.77 E-value=3.8e-07 Score=73.02 Aligned_cols=130 Identities=8% Similarity=-0.101 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 011236 280 LGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGY 359 (490)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 359 (490)
..+..+...+...|++++|...|+......+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3455555556666666666666665555443 345555666666666666666666666665542 22444556666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHhccCCHHHHHHHHHHHHH
Q 011236 360 SQKGMIEKADAVLKEIVKKGKTPTPNSWSIIA--AGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 360 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~ 412 (490)
...|++++|...|++..+..+. +...+..+. ..+...|++++|+..+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 6666666666666666665433 344443222 235556666666666665544
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.76 E-value=4.8e-07 Score=72.39 Aligned_cols=129 Identities=16% Similarity=0.006 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 011236 244 GTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGS 323 (490)
Q Consensus 244 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (490)
..+..+...+...|++++|...|++.....+ .+..++..+..++...|++++|...+++.....+ .+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 3455566667777777777777777666544 4566677777777777777777777776666654 455667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchhHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 011236 324 LVKIGELEEAEKMLEEWELSCYCYDFRVPNI--ILLGYSQKGMIEKADAVLKEIV 376 (490)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~m~ 376 (490)
+...|++++|...+++..+... .+...+.. .+..+...|++++|...+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777777776522 23333322 3333566677777777776654
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.76 E-value=1.3e-07 Score=76.96 Aligned_cols=119 Identities=8% Similarity=0.003 Sum_probs=70.7
Q ss_pred hcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHH-HHhcCCH--HH
Q 011236 291 SLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLG-YSQKGMI--EK 367 (490)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 367 (490)
..|++++|...++......+ .+...+..+...|...|++++|...+++..+.. +.+...+..+... |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34566666666665555544 445566666666666666666666666666542 2244455555555 5566666 77
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 368 ADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 368 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
|...++++.+..+. +...+..+...|...|++++|...|+++++
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77777766665433 456666666667777777777777777666
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.75 E-value=2.6e-07 Score=76.82 Aligned_cols=121 Identities=12% Similarity=0.057 Sum_probs=58.3
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccC----CChhhHHHHHHHHHhcCC
Q 011236 219 ARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKS----KDALGYNHLISHYASLGN 294 (490)
Q Consensus 219 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~ 294 (490)
..|++++|.++++.+. . .......++..+...+...|++++|...+++........ ....++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALL-A-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHH-T-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4566666666444443 2 222344555666666666666666666666655421110 123445555555666666
Q ss_pred hhHHHHHHHHHHHhcC-CC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011236 295 KDEMMKFWGLQKIKCK-KQ-L----NRDYITMLGSLVKIGELEEAEKMLEEWE 341 (490)
Q Consensus 295 ~~~a~~~~~~~~~~~~-~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (490)
+++|...+++...... .+ + ...+..+...+...|++++|...+++..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666666554443311 01 1 1224444444445555555555554443
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.75 E-value=1.2e-06 Score=77.59 Aligned_cols=168 Identities=5% Similarity=-0.154 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCC---CC--hh
Q 011236 245 TYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKD----ALGYNHLISHYASLGNKDEMMKFWGLQKIKCKK---QL--NR 315 (490)
Q Consensus 245 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 315 (490)
.+...+..+...|++++|.+.+.+........++ ...+..+...+...|++++|+..+++....... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444667778888888888888776654332011 122344556677788999999988877654321 11 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCC-----chhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CH
Q 011236 316 DYITMLGSLVKIGELEEAEKMLEEWELSC-YCYD-----FRVPNIILLGYSQKGMIEKADAVLKEIVKKG----KTP-TP 384 (490)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~ 384 (490)
+++.+...|...|++++|...+++..+.- ..|+ ..++..+...|...|++++|...+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 77888889999999999999998887320 1122 2577888899999999999999999886532 111 15
Q ss_pred HHHHHHHHHHhccCCHHHH-HHHHHHHHH
Q 011236 385 NSWSIIAAGYADKNNMEKA-FECMKEALA 412 (490)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 412 (490)
.+|..+...|.+.|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 788888876
No 138
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.74 E-value=3.5e-07 Score=69.60 Aligned_cols=106 Identities=10% Similarity=0.043 Sum_probs=65.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHH
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSS 429 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~ 429 (490)
.+..+...+.+.|++++|+..|++.++..+. +...|..+..+|.+.|++++|++.++++++..|+.....+.. .+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3445666677777777777777777766544 566677777777777777777777777766443221111111 35556
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcccch
Q 011236 430 ILDWLGDNRDVEEVEAFVSSLKIKVQKR 457 (490)
Q Consensus 430 l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 457 (490)
+..++...|++++|.+.|++..+..|.+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 6666677777777777777766655543
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=5.2e-08 Score=85.82 Aligned_cols=195 Identities=9% Similarity=-0.041 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHH
Q 011236 206 DNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHL 285 (490)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 285 (490)
+...+..+...+...|++++|...|++.. .... .+...|..+..+|...|++++|+..+++.....+ .+...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAI-TRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHH
Confidence 44556667777777778888888777776 3333 3566777777778888888888888877776554 466777777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCH
Q 011236 286 ISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMI 365 (490)
Q Consensus 286 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 365 (490)
..++...|++++|...|+......+ .+...+...+....+. ..+. -+........+.+......+.. + ..|+.
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~ 151 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLTR-L-IAAER 151 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHH
Confidence 7778888888888888777666543 1111111111111111 1111 1122222324444444443322 2 26788
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHH
Q 011236 366 EKADAVLKEIVKKGKTPTPNSWSIIAAGYADK-NNMEKAFECMKEALA 412 (490)
Q Consensus 366 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 412 (490)
++|.+.++...+..+. +......+...+.+. +.+++|.++|.++.+
T Consensus 152 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888777765321 333334444444444 567788888877755
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.72 E-value=4.1e-08 Score=88.95 Aligned_cols=132 Identities=6% Similarity=-0.130 Sum_probs=86.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011236 279 ALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQL--------------NRDYITMLGSLVKIGELEEAEKMLEEWELSC 344 (490)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 344 (490)
...+..+...+.+.|++++|...|++.....+... ...|..+..++.+.|++++|...+++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33444444555555555555555554444433111 3567777777777888888888887777752
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH-HHHHHHHHH
Q 011236 345 YCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKA-FECMKEALA 412 (490)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 412 (490)
+.+...+..+..+|...|++++|...|++.++..+. +...+..+...+.+.|+.++| ...++.|..
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666777777788888888888888888776544 666777777777777777777 456666654
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.72 E-value=9.6e-08 Score=74.97 Aligned_cols=98 Identities=11% Similarity=0.053 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCc-chhhHHH
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRP-KPSLVSS 429 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ 429 (490)
.+..+...+.+.|++++|...|++....++. +...|..+..+|...|++++|+..|++++.. .| +...+..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-------~p~~~~~~~~ 94 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-------DIXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTCTHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------CCCCchHHHH
Confidence 3444445555555555555555555554433 4555555555555555555555555555551 12 2244455
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 430 ILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 430 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
+..++...|++++|...|++..+..|.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 555555555555555555555554443
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.71 E-value=6.1e-07 Score=67.66 Aligned_cols=96 Identities=13% Similarity=0.093 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 011236 281 GYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYS 360 (490)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (490)
.+..+...+...|++++|...++++....+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 344444444444555555554444444332 233444444444445555555555555444431 223334444555555
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 011236 361 QKGMIEKADAVLKEIVKK 378 (490)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~ 378 (490)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 555555555555555544
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.69 E-value=4.1e-08 Score=88.92 Aligned_cols=152 Identities=9% Similarity=-0.030 Sum_probs=119.0
Q ss_pred cCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------chhHHHHHH
Q 011236 292 LGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYD--------------FRVPNIILL 357 (490)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~ 357 (490)
.+++++|...|+......+ .+...+..+...+.+.|++++|...|++..+...... ...|..+..
T Consensus 126 L~~~~~A~~~~~~a~~~~p-~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKL-EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3455566665554333322 3456788899999999999999999999998633221 378888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc-hhhHHHHHHHHHc
Q 011236 358 GYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK-PSLVSSILDWLGD 436 (490)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 436 (490)
+|.+.|++++|+..+++.++..+. +...|..+..+|...|++++|+..|+++++. .|+ ...+..+..++.+
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL-------YPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CSSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHH
Confidence 999999999999999999998655 7889999999999999999999999999983 344 4678888888888
Q ss_pred CCCHHHH-HHHHHHHHh
Q 011236 437 NRDVEEV-EAFVSSLKI 452 (490)
Q Consensus 437 ~g~~~~a-~~~~~~~~~ 452 (490)
.|+.++| ...++.|..
T Consensus 277 ~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 277 IRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999888 446665544
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.69 E-value=3.6e-07 Score=74.23 Aligned_cols=120 Identities=8% Similarity=0.073 Sum_probs=67.9
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHH-HHhcCCh--
Q 011236 219 ARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISH-YASLGNK-- 295 (490)
Q Consensus 219 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 295 (490)
..|++++|...+++.. .... .+...+..+..+|...|++++|+..|++.....+ .+...+..+..+ +...|++
T Consensus 22 ~~~~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKI-RANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHH-HHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHH-HhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCcch
Confidence 4555666666666554 3222 3455566666666666666666666666665544 355555555555 5566665
Q ss_pred hHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011236 296 DEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELS 343 (490)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 343 (490)
++|...++......+ .+...+..+...+...|++++|...++++.+.
T Consensus 98 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666666655544 34455556666666666666666666666654
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.68 E-value=1e-07 Score=74.74 Aligned_cols=100 Identities=12% Similarity=-0.068 Sum_probs=70.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011236 313 LNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAA 392 (490)
Q Consensus 313 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 392 (490)
+...+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|...|++.+..++. +...|..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 33455566667777777777777777776652 235566677777777777777777777777776544 5667777777
Q ss_pred HHhccCCHHHHHHHHHHHHHhh
Q 011236 393 GYADKNNMEKAFECMKEALAVH 414 (490)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~~ 414 (490)
+|...|++++|...|+++++..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 7777788888888887777733
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=5.8e-07 Score=68.43 Aligned_cols=113 Identities=12% Similarity=-0.016 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHH
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSI 430 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l 430 (490)
.+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...+++++... ..+...+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~ 86 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID------PAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC------ccCHHHHHHH
Confidence 3344444445555555555555555444322 34445555555555555555555555555411 1123444444
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhc
Q 011236 431 LDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRS 470 (490)
Q Consensus 431 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 470 (490)
...+...|++++|...+++..+..|. ...+..+..++.+.
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 45555555555555555555555444 44444444444443
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.67 E-value=9.4e-07 Score=67.57 Aligned_cols=97 Identities=13% Similarity=-0.015 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHH
Q 011236 243 WGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLG 322 (490)
Q Consensus 243 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 322 (490)
...+..+...+...|++++|...|++.....+ .+...+..+..++...|++++|...+++.....+ .+...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP--KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 33444444444444444444444444443322 2334444444444444444444444444444332 23334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 011236 323 SLVKIGELEEAEKMLEEWEL 342 (490)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~ 342 (490)
++.+.|++++|.+.+++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 44444444444444444443
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.66 E-value=4.9e-07 Score=68.63 Aligned_cols=94 Identities=14% Similarity=0.059 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc-hhhHHHHH
Q 011236 353 NIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK-PSLVSSIL 431 (490)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~ 431 (490)
..+...+.+.|++++|...|++.++..+. +...|..+..+|.+.|++++|+..++++++. .|+ ...+..+.
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg 79 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK-------DPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------CCCcHHHHHHHH
Confidence 33444444455555555555555444332 4444555555555555555555555555441 122 23444444
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcc
Q 011236 432 DWLGDNRDVEEVEAFVSSLKIKV 454 (490)
Q Consensus 432 ~~~~~~g~~~~a~~~~~~~~~~~ 454 (490)
.++...|++++|...+++..+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 45555555555555555554444
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.66 E-value=6.9e-07 Score=68.02 Aligned_cols=116 Identities=11% Similarity=-0.062 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 011236 280 LGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGY 359 (490)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 359 (490)
..+..+...+...|++++|...+++.....+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 3444455555555555555555555444433 334445555555555555555555555555431 22334455555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 011236 360 SQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKN 398 (490)
Q Consensus 360 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 398 (490)
...|++++|...|++..+..+. +...+..+...+...|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 5555555555555555554332 4444444544444444
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.65 E-value=1.7e-07 Score=80.56 Aligned_cols=187 Identities=11% Similarity=-0.011 Sum_probs=89.0
Q ss_pred hhcCHHHHHHHHHHccccCC-ChhHHHHH-------HHHHHhcCChhHHHHHHHHHHhcCCCCCcc--------------
Q 011236 116 KVRGLESAETYFNSLNDEDK-VDKLYGAL-------LNCYVREGLVDESLSLMQKMKEMGSFGSAL-------------- 173 (490)
Q Consensus 116 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------------- 173 (490)
..++...|.+.|.++...+| ....|..+ ...+.+.++..+++..+..-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46778888888888887777 36677766 3455555555555444443333 222110
Q ss_pred --------hHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCC--H
Q 011236 174 --------NYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMD--W 243 (490)
Q Consensus 174 --------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~ 243 (490)
.+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+... ... .|. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHH
Confidence 11223334445555555555555544422 222233333344555555555555554333 111 010 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011236 244 GTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSK--DALGYNHLISHYASLGNKDEMMKFWGLQKIKC 309 (490)
Q Consensus 244 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 309 (490)
..+..+..++...|++++|+..|++....... | ..........++.+.|+.++|..+|+++....
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~-P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAG-EACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT-TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23344455555555555555555554422110 1 22233444444555555555555555554443
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=1.2e-06 Score=65.17 Aligned_cols=107 Identities=17% Similarity=0.008 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHH
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSI 430 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l 430 (490)
.+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~ 78 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------PDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC------cccHHHHHHH
Confidence 3444555555566666666666655554332 45555555556666666666666666665511 1123455555
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHH
Q 011236 431 LDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALT 464 (490)
Q Consensus 431 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~ 464 (490)
..++...|++++|...+++..+..|. ...+..+.
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55566666666666666666655555 44444433
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.62 E-value=1.4e-06 Score=66.09 Aligned_cols=98 Identities=12% Similarity=-0.034 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011236 315 RDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGY 394 (490)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 394 (490)
..+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++.++.++. +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 456666777778888888888888877752 335667778888888888888888888888887654 677888888888
Q ss_pred hccCCHHHHHHHHHHHHHhh
Q 011236 395 ADKNNMEKAFECMKEALAVH 414 (490)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~ 414 (490)
...|++++|...|+++++..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 88888888888888888743
No 153
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.61 E-value=3e-07 Score=79.10 Aligned_cols=131 Identities=11% Similarity=-0.036 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHh
Q 011236 318 ITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPT--PNSWSIIAAGYA 395 (490)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~ 395 (490)
..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 344555666777777777776665532 222244444556667777777777776443321 110 225666666777
Q ss_pred ccCCHHHHHHHHHHHHHhhhcCcCCCcc--hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 396 DKNNMEKAFECMKEALAVHEENKFWRPK--PSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 396 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
..|++++|+..|+++.. ....|. .........++.+.|+.++|..+|+++....|.
T Consensus 183 ~LG~~~eAl~~l~~a~~-----g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 183 NLALFTEAERRLTEAND-----SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HTTCHHHHHHHHHHHHT-----STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HCCCHHHHHHHHHHHhc-----CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 77777777777777664 222132 234555556666777777777777777766665
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.60 E-value=9.5e-07 Score=68.69 Aligned_cols=94 Identities=15% Similarity=0.001 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 011236 317 YITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD 396 (490)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 396 (490)
+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|...|++.++.++. +...|..+..+|..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3334444444555555555555544431 123334444444455555555555555555444332 34444444455555
Q ss_pred cCCHHHHHHHHHHHHH
Q 011236 397 KNNMEKAFECMKEALA 412 (490)
Q Consensus 397 ~~~~~~a~~~~~~~~~ 412 (490)
.|++++|...|+++++
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555444
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.60 E-value=2.2e-05 Score=69.59 Aligned_cols=218 Identities=11% Similarity=-0.012 Sum_probs=152.9
Q ss_pred HcCCHH-HHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCC----------hhHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 011236 255 IAGLKE-KAIIYLKKCEDIVSKSKDALGYNHLISHYASLGN----------KDEMMKFWGLQKIKCKKQLNRDYITMLGS 323 (490)
Q Consensus 255 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (490)
+.|.++ +|+..++.+....+ .+..+|+.--..+...+. +++++.+++.+....+ -+..+|+.-...
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP--~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 344433 56666666666554 344445443333332222 5788899998888776 677788877777
Q ss_pred HHhcC--CHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---
Q 011236 324 LVKIG--ELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGM-IEKADAVLKEIVKKGKTPTPNSWSIIAAGYADK--- 397 (490)
Q Consensus 324 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--- 397 (490)
+.+.+ +++++..+++.+.+.. +-|...|+.-...+...|. ++++++.++++++.++. |...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 77777 4899999999999873 3477788877777788888 69999999999999877 888888777766554
Q ss_pred -----------CCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcC-----------CCHHHHHHHHHHHHhcc
Q 011236 398 -----------NNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDN-----------RDVEEVEAFVSSLKIKV 454 (490)
Q Consensus 398 -----------~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~ 454 (490)
+.++++++++++++. ..|+. ..|+-+-..+.+. +.++++.+.++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~-------~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFF-------TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHH-------HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccchHHHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 458899999999998 33544 5565554555544 45789999999999999
Q ss_pred cc-hhhhHHHHH---HHHhcC--CcHHHHHHHHHhC
Q 011236 455 QK-RNMYHALTE---AHIRSG--QEVDGLLESMKAD 484 (490)
Q Consensus 455 ~~-~~~~~~l~~---~~~~~g--~~a~~~~~~m~~~ 484 (490)
|. .-.+..++. +....| +++..++.++.+.
T Consensus 269 pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 269 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 88 333333322 222344 6788888888763
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.59 E-value=1.3e-06 Score=64.41 Aligned_cols=101 Identities=11% Similarity=0.092 Sum_probs=76.5
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCc---ch
Q 011236 348 DFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRP---KP 424 (490)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p---~~ 424 (490)
+...+..+...+...|++++|...+++..+..+. +...|..+...+...|++++|...++++++. .| +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~ 76 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINV-------IEDEYNK 76 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------SCCTTCH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CcccchH
Confidence 4456677777788888888888888888776544 6677778888888888888888888888772 23 35
Q ss_pred hhHHHHHHHHHcC-CCHHHHHHHHHHHHhcccc
Q 011236 425 SLVSSILDWLGDN-RDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 425 ~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~ 456 (490)
..+..+...+... |++++|.+.+++.....|.
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 6777777888888 8888888888888777664
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.58 E-value=9.2e-08 Score=79.43 Aligned_cols=128 Identities=11% Similarity=-0.041 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhc
Q 011236 352 PNIILLGYSQKGMIEKADAVLKEIVKKGKTP---------------TPNSWSIIAAGYADKNNMEKAFECMKEALAVHEE 416 (490)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 416 (490)
+..+...+...|++++|...|++.++....- ...+|..+..+|...|++++|+..++++++..
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 118 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-- 118 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--
Confidence 3334444555555555555555555432210 13678888888999999999999999998832
Q ss_pred CcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC--CcHH-HHHHHHHhCC
Q 011236 417 NKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG--QEVD-GLLESMKADD 485 (490)
Q Consensus 417 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~-~~~~~m~~~~ 485 (490)
..+...+..+..++...|++++|...|++..+..|. ..++..+...+...+ +++. ..+..|...+
T Consensus 119 ----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 119 ----KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp ----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ----cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 134577888888889999999999999999988888 888888888888777 4444 5556665544
No 158
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=2.5e-05 Score=73.37 Aligned_cols=200 Identities=9% Similarity=0.025 Sum_probs=132.2
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCCh
Q 011236 215 NSYGARSELSSMENVLQEMESQSHISMD---------------WGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDA 279 (490)
Q Consensus 215 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 279 (490)
..+.+.|++++|++.|..+.....-..+ ...+..+...|...|++++|.+.+..+.......++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3455667777777777766522111111 1235668888899999999998888876543321222
Q ss_pred ----hhHHHHHHHHHhcCChhHHHHHHHHHHHhcC----C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---
Q 011236 280 ----LGYNHLISHYASLGNKDEMMKFWGLQKIKCK----K-QLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCY--- 347 (490)
Q Consensus 280 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--- 347 (490)
.+.+.+...+...|+.+.+..++........ . .-..++..+...+...|++++|..+++++...-...
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2233344444557888888888886654322 1 123467788888999999999999998876542111
Q ss_pred --CchhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CC-C--HHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 011236 348 --DFRVPNIILLGYSQKGMIEKADAVLKEIVKK--GK-TP-T--PNSWSIIAAGYADKNNMEKAFECMKEALAVH 414 (490)
Q Consensus 348 --~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~-~p-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 414 (490)
...++..++..|...|++++|..++++.... .. .| . ...+..+...+...+++++|...|.++.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 1346778888899999999999998887642 11 11 1 2456777778888999999999888887633
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.57 E-value=1.8e-07 Score=77.70 Aligned_cols=149 Identities=6% Similarity=-0.118 Sum_probs=78.2
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCC---------------hhh
Q 011236 252 YYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQL---------------NRD 316 (490)
Q Consensus 252 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~ 316 (490)
.....|+++++.+.++.-..... .....+..+...+...|++++|...|++.....+... ...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKV--QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ---------CCCSGGGCCHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33444455555444443222111 2334455556666666666666666666555433111 245
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 011236 317 YITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD 396 (490)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 396 (490)
+..+..++...|++++|...++...+. .+.+...+..+..+|...|++++|...|++..+..+. +...+..+..++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 566666666677777777777766665 2234455666666677777777777777776665433 45556666665555
Q ss_pred cCCHHHHH
Q 011236 397 KNNMEKAF 404 (490)
Q Consensus 397 ~~~~~~a~ 404 (490)
.++.+++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 55554444
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.56 E-value=1.2e-06 Score=70.05 Aligned_cols=97 Identities=13% Similarity=0.042 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011236 314 NRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAG 393 (490)
Q Consensus 314 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 393 (490)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++.++..+. +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3445556666666666666666666666542 224455566666666666666666666666665433 45566666666
Q ss_pred HhccCCHHHHHHHHHHHHH
Q 011236 394 YADKNNMEKAFECMKEALA 412 (490)
Q Consensus 394 ~~~~~~~~~a~~~~~~~~~ 412 (490)
|...|++++|...|+++++
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 6666666666666666665
No 161
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=6.7e-06 Score=77.39 Aligned_cols=203 Identities=11% Similarity=-0.009 Sum_probs=146.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccCCCh---------------hhHHHHHHHHHhcCChhHHHHHHHHHHHhcCC-C
Q 011236 249 VANYYIIAGLKEKAIIYLKKCEDIVSKSKDA---------------LGYNHLISHYASLGNKDEMMKFWGLQKIKCKK-Q 312 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 312 (490)
-...+.+.|++++|++.|..+.+..+...+. ..+..+...|...|++++|.+++......... +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3566788999999999999987754431111 23778899999999999999999977664432 2
Q ss_pred Chh----hHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-
Q 011236 313 LNR----DYITMLGSLVKIGELEEAEKMLEEWELS----CYCYD-FRVPNIILLGYSQKGMIEKADAVLKEIVKK--GK- 380 (490)
Q Consensus 313 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~- 380 (490)
+.. ..+.+...+...|+.+.+..++...... +..+. ..++..+...|...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 221 2333344445678999999999887643 22222 346778899999999999999999988653 11
Q ss_pred -CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc--hhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 381 -TP-TPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK--PSLVSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 381 -~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
.| ...+|..++..|...|++++|..++++++...+... ..|. ...+..+...+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 234788999999999999999999999987443111 1111 24566777788899999999988877654
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.54 E-value=1.7e-06 Score=65.74 Aligned_cols=106 Identities=13% Similarity=0.101 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HHHHHH
Q 011236 316 DYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKT--PT----PNSWSI 389 (490)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~~~~~ 389 (490)
.+..+...+.+.|++++|...|++.++.. +.+...|+.+..+|.+.|++++|+..+++.++.++. ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45566777777777777777777777652 234556777777778888888888877777664321 11 235777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHH
Q 011236 390 IAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSS 429 (490)
Q Consensus 390 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 429 (490)
+..++...|++++|++.|++++. ..|++.+...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~-------~~~~~~~~~~ 121 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS-------EFRDPELVKK 121 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-------HSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh-------hCcCHHHHHH
Confidence 78888889999999999999887 3466655443
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.54 E-value=3.6e-06 Score=64.74 Aligned_cols=102 Identities=10% Similarity=-0.033 Sum_probs=69.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011236 312 QLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIA 391 (490)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 391 (490)
.+...+..+...+...|++++|...|+...... +.+...+..+..+|...|++++|...+++..+.++. +...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 345566666667777777777777777766652 224556666777777777777777777777776544 566777777
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhh
Q 011236 392 AGYADKNNMEKAFECMKEALAVHE 415 (490)
Q Consensus 392 ~~~~~~~~~~~a~~~~~~~~~~~~ 415 (490)
.++...|++++|...|+++++..|
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHCh
Confidence 777777777777777777776443
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.52 E-value=1.7e-06 Score=67.25 Aligned_cols=99 Identities=10% Similarity=0.030 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHH
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSI 430 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l 430 (490)
.+..+...+.+.|++++|...|++....++. +...|..+..+|...|++++|+..|++++...| .+...+..+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l 92 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI------NEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCTHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC------CCcHHHHHH
Confidence 3444555566666666666666666665443 556666666666666666666666666666221 223455566
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 431 LDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 431 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
..++...|++++|...|++..+..|.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 66666666666666666666666554
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.51 E-value=5.8e-06 Score=61.40 Aligned_cols=95 Identities=13% Similarity=-0.075 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh
Q 011236 282 YNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQ 361 (490)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (490)
+..+...+...|++++|...++......+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..+|..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 33344444444444444444444443332 233344444444444444444444444444431 1123344444444445
Q ss_pred cCCHHHHHHHHHHHHHc
Q 011236 362 KGMIEKADAVLKEIVKK 378 (490)
Q Consensus 362 ~g~~~~A~~~~~~m~~~ 378 (490)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 55555555555544443
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.49 E-value=1.6e-06 Score=68.76 Aligned_cols=102 Identities=16% Similarity=0.060 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchh
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKT-PT----PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPS 425 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~ 425 (490)
++..+...|...|++++|...+++..+.... ++ ...+..+...+...|++++|...++++++.............
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555556666666666666555432100 01 334566666667777777777777776653321111111124
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 426 LVSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 426 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
.+..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555666667777777777777766554
No 167
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.48 E-value=5.6e-06 Score=64.20 Aligned_cols=114 Identities=12% Similarity=0.017 Sum_probs=82.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------C-----chhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------C
Q 011236 318 ITMLGSLVKIGELEEAEKMLEEWELSCYCY------D-----FRVPNIILLGYSQKGMIEKADAVLKEIVKK-------G 379 (490)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------~ 379 (490)
......+.+.|++++|...|++.++..... + ...|..+..++.+.|++++|+..+++.++. +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334444445555555555555554431110 1 227888888889999999999999988886 5
Q ss_pred CCCCHHHH----HHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHH
Q 011236 380 KTPTPNSW----SIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILD 432 (490)
Q Consensus 380 ~~p~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 432 (490)
+. +...| .....++...|++++|+..|++++++.|+..++.+........+.
T Consensus 95 pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 95 QD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp ST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred Cc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 43 55678 899999999999999999999999999988898887766655554
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.47 E-value=1.3e-06 Score=65.76 Aligned_cols=97 Identities=11% Similarity=0.133 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc-hhhHHHH
Q 011236 352 PNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK-PSLVSSI 430 (490)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l 430 (490)
+..+...+.+.|++++|...|++.++..+. +...|..+..++...|++++|+..|+++++ +.|+ ...+..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-------l~P~~~~~~~~l 91 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARM-------LDPKDIAVHAAL 91 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHH
Confidence 334455566666666666666666665443 555666666666666666666666666665 2232 3455556
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 431 LDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 431 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
..++...|++++|...++++.+..|.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 66666666666666666666655443
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.47 E-value=3.5e-06 Score=64.03 Aligned_cols=104 Identities=14% Similarity=0.021 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc-hhhHHHH
Q 011236 352 PNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK-PSLVSSI 430 (490)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l 430 (490)
+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...+++++...+......+. ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 334444455555555555555555444322 44445555555555555555555555555432211000000 3344444
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 431 LDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 431 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
...+...|++++|...++++.+..|.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 55555555555555555555544433
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=4.7e-06 Score=65.00 Aligned_cols=97 Identities=11% Similarity=-0.128 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCc-chh
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKTPT----PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRP-KPS 425 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~ 425 (490)
.+..+...+...|++++|...|++..+.. |+ ...|..+...|...|++++|+..++++++. .| +..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~ 100 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-------DGGDVK 100 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------TSCCHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-------CccCHH
Confidence 34444444455555555555555554432 22 344444555555555555555555555441 12 233
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 426 LVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 426 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
.+..+..++...|++++|...+++..+..|.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 4444444555555555555555555554444
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.43 E-value=1.9e-06 Score=65.58 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HHHHH
Q 011236 315 RDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKT--PT----PNSWS 388 (490)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~~~~ 388 (490)
..+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+..+. ++ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 445666677777777777777777777652 335566777777788888888888888877765332 12 66788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHH
Q 011236 389 IIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILD 432 (490)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 432 (490)
.+...+...|++++|...|+++++ ..|+......+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~l~~ 120 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA-------EHRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-------HCCCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH-------hCCCHHHHHHHHH
Confidence 888888889999999999988887 3355555444443
No 172
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.43 E-value=3.8e-06 Score=67.05 Aligned_cols=100 Identities=14% Similarity=-0.041 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHH
Q 011236 207 NFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLI 286 (490)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 286 (490)
...+..+...+...|++++|+..|++.. +... .+...|..+..+|...|++++|+..|++.....+ .+...|..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQAL-SIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP--KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 3455556666666677777777776665 3332 3556666666677777777777777776666544 4566666666
Q ss_pred HHHHhcCChhHHHHHHHHHHHhcC
Q 011236 287 SHYASLGNKDEMMKFWGLQKIKCK 310 (490)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~ 310 (490)
.+|...|++++|...|++.....+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCC
Confidence 777777777777777766666554
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.39 E-value=8.7e-06 Score=62.55 Aligned_cols=98 Identities=9% Similarity=-0.050 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHH
Q 011236 242 DWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITML 321 (490)
Q Consensus 242 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 321 (490)
+...+..+...+...|++++|+..|+......+ .+...|..+..++...|++++|...++......+ .+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 344444555555555555555555555544433 3444555555555555555555555555544433 3444455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 011236 322 GSLVKIGELEEAEKMLEEWEL 342 (490)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~ 342 (490)
.++...|++++|...+++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555555444
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.38 E-value=3.9e-06 Score=61.72 Aligned_cols=95 Identities=12% Similarity=-0.080 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchhHHHHHHHH
Q 011236 282 YNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCY--DFRVPNIILLGY 359 (490)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 359 (490)
+..+...+...|++++|...+++.....+ .+...+..+...+...|++++|...+++..+.. +. +...+..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 33344444444444444444444433332 233334444444444444444444444444331 11 233344444444
Q ss_pred Hhc-CCHHHHHHHHHHHHHc
Q 011236 360 SQK-GMIEKADAVLKEIVKK 378 (490)
Q Consensus 360 ~~~-g~~~~A~~~~~~m~~~ 378 (490)
... |++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 444 4444444444444443
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.38 E-value=3.6e-06 Score=63.22 Aligned_cols=94 Identities=14% Similarity=-0.007 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 011236 317 YITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD 396 (490)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 396 (490)
+..+...+.+.|++++|...+++..+.. +.+...|..+..++...|++++|+..|++.++..+. +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4445556666777777777777766642 224556666666677777777777777777666544 55666677777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 011236 397 KNNMEKAFECMKEALA 412 (490)
Q Consensus 397 ~~~~~~a~~~~~~~~~ 412 (490)
.|++++|+..++++++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777665
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=1.8e-05 Score=61.61 Aligned_cols=96 Identities=8% Similarity=-0.054 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011236 314 NRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYD----FRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSI 389 (490)
Q Consensus 314 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 389 (490)
...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...+++..+..+. +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 344555566666666666666666666653 233 455666666677777777777777776665433 5566666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH
Q 011236 390 IAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 390 l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
+..++...|++++|...|+++++
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777766
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.36 E-value=3.1e-06 Score=67.08 Aligned_cols=135 Identities=15% Similarity=-0.005 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch
Q 011236 350 RVPNIILLGYSQKGMIEKADAVLKEIVKKGKT-PT----PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP 424 (490)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~ 424 (490)
.++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|...++++++..+.........
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35666777788888888888888877653211 12 14788889999999999999999999988553222211224
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhccc-----c--hhhhHHHHHHHHhcC--CcHHHHHHHHHhC
Q 011236 425 SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQ-----K--RNMYHALTEAHIRSG--QEVDGLLESMKAD 484 (490)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~--~~~~~~l~~~~~~~g--~~a~~~~~~m~~~ 484 (490)
..+..+...+...|++++|...+++..+... . ...+..+...+...| ++|.+.+++..+.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5677888899999999999999998765421 1 677888999999999 8899999877643
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.36 E-value=1.3e-05 Score=60.73 Aligned_cols=91 Identities=10% Similarity=0.091 Sum_probs=41.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 011236 320 MLGSLVKIGELEEAEKMLEEWELSCYCYDF---RVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPT---PNSWSIIAAG 393 (490)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~ 393 (490)
+...+...|++++|...++.+.+... .+. ..+..+..+|.+.|++++|...|+++.+..+. + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 33444445555555555555544311 111 23444444455555555555555555444322 2 3344444445
Q ss_pred HhccCCHHHHHHHHHHHHH
Q 011236 394 YADKNNMEKAFECMKEALA 412 (490)
Q Consensus 394 ~~~~~~~~~a~~~~~~~~~ 412 (490)
+...|++++|...|++++.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555544
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.34 E-value=2.6e-06 Score=80.96 Aligned_cols=88 Identities=16% Similarity=0.070 Sum_probs=42.2
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH
Q 011236 252 YYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELE 331 (490)
Q Consensus 252 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 331 (490)
.+.+.|++++|++.|++..+..+ .+..+|..+..+|.+.|++++|+..+++.....+ .+...+..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 34444555555555555444333 3344455555555555555555555554444332 33344444444455555555
Q ss_pred HHHHHHHHHHh
Q 011236 332 EAEKMLEEWEL 342 (490)
Q Consensus 332 ~a~~~~~~~~~ 342 (490)
+|.+.+++..+
T Consensus 92 eA~~~~~~al~ 102 (477)
T 1wao_1 92 AALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554444
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.33 E-value=3.2e-06 Score=67.37 Aligned_cols=65 Identities=12% Similarity=0.038 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc-hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 385 NSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK-PSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
..|..+..+|.+.|++++|+..++++++. .|+ ...|..+..++...|++++|...|++..+..|.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~-------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKR-------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 34555555555555555555555555551 122 244555555555555555555555555555554
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.32 E-value=9.2e-07 Score=83.70 Aligned_cols=88 Identities=11% Similarity=0.003 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHH
Q 011236 350 RVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVS 428 (490)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~ 428 (490)
..|..+..+|.+.|++++|+..+++.++..+. +...|..+..+|...|++++|+..|+++++ +.|+. ..+.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~-------l~P~~~~a~~ 389 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE-------VNPQNKAARL 389 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TC----CHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hCCCCHHHHH
Confidence 56667777777888888888888887776544 677777777888888888888888888776 33433 5666
Q ss_pred HHHHHHHcCCCHHHHHH
Q 011236 429 SILDWLGDNRDVEEVEA 445 (490)
Q Consensus 429 ~l~~~~~~~g~~~~a~~ 445 (490)
.+..++.+.|+.+++.+
T Consensus 390 ~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 390 QISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66667777777666653
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.29 E-value=2.8e-05 Score=58.91 Aligned_cols=94 Identities=9% Similarity=0.064 Sum_probs=52.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc----hhhH
Q 011236 355 ILLGYSQKGMIEKADAVLKEIVKKGKTPTP---NSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK----PSLV 427 (490)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~ 427 (490)
+...+...|++++|...|+++.+..+. +. ..+..+..++...|++++|...|++++... |+ ...+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~~ 79 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-------PTHDKAAGGL 79 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTSTTHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-------CCCcccHHHH
Confidence 444555566666666666666554332 22 345555566666666666666666665522 22 3345
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 428 SSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 428 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
..+..++...|++++|...|+++.+..|.
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 55555566666666666666666665554
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.28 E-value=7.6e-06 Score=77.38 Aligned_cols=94 Identities=12% Similarity=0.071 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHH
Q 011236 384 PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHA 462 (490)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ 462 (490)
..+|..+..+|.+.|++++|+..++++++..+ .+...|..+..+|...|++++|...|+++.+..|. ..++..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 390 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDS------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 56889999999999999999999999998332 24578899999999999999999999999999999 889999
Q ss_pred HHHHHHhcC--CcH-HHHHHHHHh
Q 011236 463 LTEAHIRSG--QEV-DGLLESMKA 483 (490)
Q Consensus 463 l~~~~~~~g--~~a-~~~~~~m~~ 483 (490)
+..++.+.| +++ ..++++|..
T Consensus 391 l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 391 ISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999888 333 345555543
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.25 E-value=5.1e-06 Score=78.98 Aligned_cols=113 Identities=8% Similarity=-0.069 Sum_probs=49.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcc-hhhHHHHHHHHHcC
Q 011236 359 YSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPK-PSLVSSILDWLGDN 437 (490)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 437 (490)
+.+.|++++|...+++.++..+. +..+|..+..+|.+.|++++|++.++++++ +.|+ ...+..+..++...
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIE-------LDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------SCTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHc
Confidence 33444555555555544444322 344444555555555555555555555544 1122 23444444445555
Q ss_pred CCHHHHHHHHHHHHhcccc-hhhhHHHHHH--HHhcC--CcHHHHHH
Q 011236 438 RDVEEVEAFVSSLKIKVQK-RNMYHALTEA--HIRSG--QEVDGLLE 479 (490)
Q Consensus 438 g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~--~~~~g--~~a~~~~~ 479 (490)
|++++|.+.++++.+..|. ...+..+..+ +.+.| ++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555555555444444 3444444333 34334 44444444
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.21 E-value=2.5e-05 Score=62.09 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=53.9
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 349 FRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
...|..+..+|.+.|++++|+..+++.++.++. +...|..+..+|...|++++|...|++++.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 456777888888999999999999998887654 778888899999999999999999999888
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.17 E-value=4.7e-06 Score=62.17 Aligned_cols=88 Identities=15% Similarity=-0.013 Sum_probs=45.0
Q ss_pred cCCcCcHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011236 185 TGQHEKIPDVLLDMKENGV--PPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKA 262 (490)
Q Consensus 185 ~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 262 (490)
.|++++|...|++..+.+. +.+...+..+..++...|++++|...|++.. +.++ -+..++..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV-KQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 3555666666666555321 1123345555555666666666666666655 3332 3345555555666666666666
Q ss_pred HHHHHHHhhhhc
Q 011236 263 IIYLKKCEDIVS 274 (490)
Q Consensus 263 ~~~~~~~~~~~~ 274 (490)
+..|++.....+
T Consensus 81 ~~~~~~al~~~p 92 (117)
T 3k9i_A 81 VELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhCC
Confidence 666665555443
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.17 E-value=5.1e-06 Score=61.98 Aligned_cols=88 Identities=9% Similarity=-0.104 Sum_probs=58.7
Q ss_pred cCChHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhH
Q 011236 220 RSELSSMENVLQEMESQSH--ISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDE 297 (490)
Q Consensus 220 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (490)
.|++++|+..|++.. +.+ -+.+..++..+..+|...|++++|+..|++..+..+ .+...+..+..++...|++++
T Consensus 3 ~g~~~~A~~~~~~al-~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAI-ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCHHH
Confidence 567777777777777 543 113355666777777777777777777777776655 456677777777777777777
Q ss_pred HHHHHHHHHHhcC
Q 011236 298 MMKFWGLQKIKCK 310 (490)
Q Consensus 298 a~~~~~~~~~~~~ 310 (490)
|...+++.....+
T Consensus 80 A~~~~~~al~~~p 92 (117)
T 3k9i_A 80 GVELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC
Confidence 7777777666654
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.15 E-value=2.7e-05 Score=60.34 Aligned_cols=106 Identities=12% Similarity=-0.013 Sum_probs=85.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcC
Q 011236 351 VPNIILLGYSQKGMIEKADAVLKEIVKKGKTP------TP-----NSWSIIAAGYADKNNMEKAFECMKEALAVHEENKF 419 (490)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 419 (490)
.+......+.+.|++++|+..|++.++..+.. +. ..|..+..++.+.|++++|+..++++++.....-.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34556677889999999999999999875431 22 38999999999999999999999999984111112
Q ss_pred CCcch-hhH----HHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 420 WRPKP-SLV----SSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 420 ~~p~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
+.|+. ..| .....++...|++++|...|++..+..|.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 25765 677 88899999999999999999999988765
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.10 E-value=4.3e-05 Score=69.89 Aligned_cols=136 Identities=10% Similarity=-0.056 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 011236 245 TYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSL 324 (490)
Q Consensus 245 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 324 (490)
.+..+...+.+.|++++|+..|++....... .. .....++ ..... ..+...|..+..+|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--~~-----------~~~~~~~-------~~~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--SR-----------AAAEDAD-------GAKLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HH-----------HHSCHHH-------HGGGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--Cc-----------cccChHH-------HHHHH-HHHHHHHHHHHHHH
Confidence 3555667777777777777777776652211 00 0000000 00000 02233444455555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 011236 325 VKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKA 403 (490)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 403 (490)
.+.|++++|...+++..+.. +.+...+..+..+|...|++++|+..|++..+..+. +...+..+...+...++.+++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555431 123344455555555555555555555555554332 444445555555544444444
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.09 E-value=2.4e-05 Score=73.93 Aligned_cols=129 Identities=13% Similarity=-0.001 Sum_probs=60.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcC---CCC----CchhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCC-CCHH-HHHH
Q 011236 324 LVKIGELEEAEKMLEEWELSC---YCY----DFRVPNIILLGYSQKGMIEKADAVLKEIVK-----KGKT-PTPN-SWSI 389 (490)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~-p~~~-~~~~ 389 (490)
+...|++++|..++++.++.. +.+ ...+++.|...|...|++++|..++++.++ .|.. |+.. +++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 344555666655555544321 111 123455555555555566665555555443 2322 1121 3555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhhcCcCC-Ccch-hhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 390 IAAGYADKNNMEKAFECMKEALAVHEENKFW-RPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 390 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
|...|...|++++|..+++++++......|- .|+. .+...+..++...|.+++|+.++.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555544333331 1111 2223333444445555555555555543
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.09 E-value=9.3e-06 Score=73.42 Aligned_cols=151 Identities=8% Similarity=0.001 Sum_probs=65.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 011236 279 ALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLG 358 (490)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 358 (490)
...+..+...+.+.|++++|...|++.....+ +... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p--~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG--DDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC--HHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 34455566666666777777776666555432 2111 112222222221110 1255666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHH-HHc
Q 011236 359 YSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDW-LGD 436 (490)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~-~~~ 436 (490)
|.+.|++++|+..+++.++..+. +...|..+..+|...|++++|...|+++++ +.|+. ..+..+... ...
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~-------l~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQK-------YAPDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHH
Confidence 77777777777777777665433 566677777777777777777777777655 23433 233333332 123
Q ss_pred CCCHHHHHHHHHHHHhcccc
Q 011236 437 NRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 437 ~g~~~~a~~~~~~~~~~~~~ 456 (490)
.+..+.+...|.+|....|.
T Consensus 312 ~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHhhCCCCC
Confidence 34555666666666555443
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.08 E-value=0.00027 Score=68.41 Aligned_cols=168 Identities=6% Similarity=-0.091 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcC-
Q 011236 295 KDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGE----------LEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKG- 363 (490)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 363 (490)
.++|++.++.+....+ -+...|+.--.++...|+ ++++.+.++.+.+.. +-+..+|+.-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 3456677776666554 444455555555555555 777888888887763 335667777777777777
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcC----
Q 011236 364 -MIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKN-NMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDN---- 437 (490)
Q Consensus 364 -~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---- 437 (490)
++++++..++++.+.++. |..+|+.-...+.+.| .++++++.++++++.+ .-|...|......+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~------p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN------FSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT------CCCHHHHHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC------CCCccHHHHHHHHHHhhcccc
Confidence 668888888888888766 7888888777777777 7888888888887722 12345566555554442
Q ss_pred ----------CCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC
Q 011236 438 ----------RDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG 471 (490)
Q Consensus 438 ----------g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 471 (490)
+.++++.+.++++....|. ..+|..+...+.+.+
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 5578899999999988888 889998888887776
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.08 E-value=0.00014 Score=70.51 Aligned_cols=172 Identities=6% Similarity=-0.032 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcC----------HHHHHHHHHHccccCC-ChhHHHHHHHHHHhcC--C
Q 011236 86 KHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRG----------LESAETYFNSLNDEDK-VDKLYGALLNCYVREG--L 152 (490)
Q Consensus 86 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~ 152 (490)
++|++.++.+...+ +-....+..--.++...|+ +++++..++.+...+| +..+|+.-...+.+.| +
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 34555555555554 2333334333333333444 4555555555555444 3444554444444444 3
Q ss_pred hhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 011236 153 VDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQE 232 (490)
Q Consensus 153 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 232 (490)
++++++.++++.+.... |..+|+.-...+.+.|. .++++.+.+++
T Consensus 125 ~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~----------------------------------~~~~el~~~~~ 169 (567)
T 1dce_A 125 WARELELCARFLEADER-NFHCWDYRRFVAAQAAV----------------------------------APAEELAFTDS 169 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCC----------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCC----------------------------------ChHHHHHHHHH
Confidence 35555555555544333 44444444333333330 44555555555
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhH
Q 011236 233 MESQSHISMDWGTYSTVANYYIIA--------------GLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDE 297 (490)
Q Consensus 233 ~~~~~~~~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (490)
+. +.++ -+..+|+.....+.+. +.++++++.+++.....+ .|..+|..+-..+.+.++.++
T Consensus 170 ~I-~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P--~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 170 LI-TRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP--NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp TT-TTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS--SCSHHHHHHHHHHSCCCCCSC
T ss_pred HH-HHCC-CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCCccc
Confidence 55 4444 4445555444444432 456788888888877665 577888888777777666443
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.08 E-value=4.5e-05 Score=69.74 Aligned_cols=139 Identities=11% Similarity=0.023 Sum_probs=102.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 011236 281 GYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYS 360 (490)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (490)
.+..+...+.+.|++++|+..|++.+..... .. .....+++. +. .+.+..+|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--~~----------~~~~~~~~~-------~~-~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--SR----------AAAEDADGA-------KL-QPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HH----------HHSCHHHHG-------GG-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--Cc----------cccChHHHH-------HH-HHHHHHHHHHHHHHHH
Confidence 4666777788888888888888876653220 00 001111111 11 1224567888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCH
Q 011236 361 QKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDV 440 (490)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 440 (490)
+.|++++|+..+++.++..+. +...|..+..+|...|++++|+..|+++++..|+ +...+..+..++...++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~------~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE------DKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHH
Confidence 999999999999999997654 7889999999999999999999999999996653 356677777888888888
Q ss_pred HHHHHH
Q 011236 441 EEVEAF 446 (490)
Q Consensus 441 ~~a~~~ 446 (490)
+++.+.
T Consensus 358 ~~a~k~ 363 (370)
T 1ihg_A 358 KDKEKA 363 (370)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 877653
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.03 E-value=1.3e-05 Score=72.50 Aligned_cols=145 Identities=13% Similarity=0.006 Sum_probs=84.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011236 314 NRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAG 393 (490)
Q Consensus 314 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 393 (490)
...+..+...+.+.|++++|...|++.... .|+.. .+...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 345667777777888888888888887764 23321 1223334444433221 1378899999
Q ss_pred HhccCCHHHHHHHHHHHHHhhhcCcCCCc-chhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC
Q 011236 394 YADKNNMEKAFECMKEALAVHEENKFWRP-KPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG 471 (490)
Q Consensus 394 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 471 (490)
|.+.|++++|+..++++++. .| +...|..+..+|...|++++|...|+++.+..|. ..++..+........
T Consensus 240 ~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE-------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999983 34 4578999999999999999999999999999888 777777776644443
Q ss_pred ---CcHHHHHHHHHhC
Q 011236 472 ---QEVDGLLESMKAD 484 (490)
Q Consensus 472 ---~~a~~~~~~m~~~ 484 (490)
+.+..+|++|...
T Consensus 313 ~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 313 ALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHhhCC
Confidence 7788888888754
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.97 E-value=3.6e-05 Score=72.69 Aligned_cols=125 Identities=14% Similarity=-0.015 Sum_probs=88.9
Q ss_pred HHHhcCChhHHHHHHHHHHHhcC------CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC---CC-chhHH
Q 011236 288 HYASLGNKDEMMKFWGLQKIKCK------KQ-LNRDYITMLGSLVKIGELEEAEKMLEEWELS---CYC---YD-FRVPN 353 (490)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~-~~~~~ 353 (490)
.+...|++++|+.++++.+.... .| ...+++.|..+|...|++++|..++++.++. -+. |+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45578899999988887766432 12 2246788888888999999999988877643 122 22 34678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-----cCCC-CCHH-HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 354 IILLGYSQKGMIEKADAVLKEIVK-----KGKT-PTPN-SWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~-p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
.|...|...|++++|..++++..+ .|.. |+.. +.+.+..++...+.+++|..++.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999998888764 3543 2222 345566677778888888888888876
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.89 E-value=5.5e-05 Score=55.98 Aligned_cols=78 Identities=13% Similarity=0.122 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 333 AEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 333 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
+...+++..+.. +.+...+..+...|...|++++|...|++.++..+. +...|..+..+|...|++++|...|+++++
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555532 224455566666666666666666666666665433 455666666666666666666666666665
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.89 E-value=6.7e-06 Score=60.43 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 350 RVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
..+..+...+...|++++|...|++.++..+. +...|..+..++...|++++|+..++++++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34555566666666666666666666665433 555666666666666666666666666665
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.87 E-value=0.00013 Score=53.90 Aligned_cols=78 Identities=13% Similarity=0.101 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011236 226 MENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQ 305 (490)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (490)
|...|++.. ..+. .+...+..+..+|...|++++|+..|++.....+ .+...|..+..++...|++++|...|++.
T Consensus 4 a~~~~~~al-~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAML-AQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHH-TTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444455444 3332 3444555555555555555555555555554433 34445555555555555555555555544
Q ss_pred HH
Q 011236 306 KI 307 (490)
Q Consensus 306 ~~ 307 (490)
..
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.84 E-value=5.5e-05 Score=58.49 Aligned_cols=98 Identities=15% Similarity=0.022 Sum_probs=65.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 011236 327 IGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGM----------IEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD 396 (490)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 396 (490)
.+.+++|.+.++...+.. +.+...|+.+..++...++ +++|+..|++.++.++. +...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 344555555555555542 2244455555555555444 56888888888887665 67788888888887
Q ss_pred cC-----------CHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHH
Q 011236 397 KN-----------NMEKAFECMKEALAVHEENKFWRPKPSLVSSILDW 433 (490)
Q Consensus 397 ~~-----------~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 433 (490)
.| ++++|++.|+++++ +.|+...|...+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~-------l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD-------EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH-------hCCCCHHHHHHHHH
Confidence 64 89999999999998 55776666555443
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.82 E-value=3.6e-05 Score=59.55 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=80.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH----------HHHHHHHHHHHHhhhcCcCCCcch-hhH
Q 011236 359 YSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNM----------EKAFECMKEALAVHEENKFWRPKP-SLV 427 (490)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~p~~-~~~ 427 (490)
..+.+++++|.+.++..++..+. +...|..+..++...+++ ++|+..|+++++ +.|+. ..|
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~-------ldP~~~~A~ 83 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL-------IDPKKDEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-------HCTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH-------hCcCcHHHH
Confidence 45667899999999999998766 889999999999888764 599999999998 44655 789
Q ss_pred HHHHHHHHcCC-----------CHHHHHHHHHHHHhcccchhhhHHH
Q 011236 428 SSILDWLGDNR-----------DVEEVEAFVSSLKIKVQKRNMYHAL 463 (490)
Q Consensus 428 ~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~l 463 (490)
..+..+|...| ++++|.+.|+++.+..|....|...
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999998774 8999999999999999984444333
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.82 E-value=0.00016 Score=50.55 Aligned_cols=83 Identities=13% Similarity=0.203 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhH
Q 011236 383 TPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYH 461 (490)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~ 461 (490)
+...+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|...+++..+..|. ...+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 81 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 81 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 34567788888888999999999999988722 124567788888888999999999999999888888 88888
Q ss_pred HHHHHHHhcC
Q 011236 462 ALTEAHIRSG 471 (490)
Q Consensus 462 ~l~~~~~~~g 471 (490)
.+..++.+.|
T Consensus 82 ~l~~~~~~~g 91 (91)
T 1na3_A 82 NLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 8887776554
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.80 E-value=0.00077 Score=51.61 Aligned_cols=111 Identities=10% Similarity=-0.080 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHH
Q 011236 329 ELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD----KNNMEKAF 404 (490)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~ 404 (490)
++++|.+.|++..+.|. .... |...|...+.+++|...|++..+.| +...+..|...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g~---~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE---MFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC---Hhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45566666666665541 1122 4555555556666666666666653 55556666666655 56666666
Q ss_pred HHHHHHHHhhhcCcCCCcchhhHHHHHHHHHc----CCCHHHHHHHHHHHHhccc
Q 011236 405 ECMKEALAVHEENKFWRPKPSLVSSILDWLGD----NRDVEEVEAFVSSLKIKVQ 455 (490)
Q Consensus 405 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 455 (490)
.+|+++.+ . -+...+..|...|.. .++.++|..+|++..+.+.
T Consensus 82 ~~~~~Aa~-----~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACG-----L---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHH-----T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHc-----C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 66666665 2 234445555555555 5666666666666666554
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.75 E-value=2.4e-05 Score=57.34 Aligned_cols=65 Identities=6% Similarity=-0.093 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCC
Q 011236 70 LELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDK 135 (490)
Q Consensus 70 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 135 (490)
..+..+...+...|++++|++.|++..+.. +.++..+..+..++...|++++|+..|+......|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 344444455555555555555555555443 23344444444444455555555555554444443
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.70 E-value=0.00086 Score=51.33 Aligned_cols=108 Identities=8% Similarity=-0.068 Sum_probs=67.2
Q ss_pred ChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh----cCCHHHHH
Q 011236 294 NKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQ----KGMIEKAD 369 (490)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 369 (490)
++++|...|++....+. +... +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45566666665555442 3222 5555555556666666666666653 34555566666666 66777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHH
Q 011236 370 AVLKEIVKKGKTPTPNSWSIIAAGYAD----KNNMEKAFECMKEALA 412 (490)
Q Consensus 370 ~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 412 (490)
..|++..+.| ++..+..|...|.. .++.++|..+|+++.+
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 7777777654 55666666666666 6777777777777766
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.68 E-value=0.00057 Score=47.57 Aligned_cols=62 Identities=21% Similarity=0.329 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 011236 245 TYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIK 308 (490)
Q Consensus 245 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (490)
.+..+...+...|++++|+..|++.....+ .+...+..+..++...|++++|...+++....
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444444455555555555554444332 23444444444455555555555555444443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.68 E-value=0.00031 Score=50.33 Aligned_cols=64 Identities=11% Similarity=0.133 Sum_probs=42.4
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 348 DFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
+...+..+...|.+.|++++|+..|++.++.++. +...|..+..+|...|++++|.+.|+++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445566666667777777777777777666544 455666677777777777777777776665
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.62 E-value=0.00047 Score=49.35 Aligned_cols=65 Identities=15% Similarity=0.084 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 011236 242 DWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIK 308 (490)
Q Consensus 242 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (490)
+...+..+..+|...|++++|+..|++..+..+ .+...|..+..+|...|++++|...|++....
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555566666666666666666666665544 34556666666666666666666666655443
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.55 E-value=0.003 Score=56.26 Aligned_cols=74 Identities=12% Similarity=0.063 Sum_probs=53.5
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchh
Q 011236 346 CYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPS 425 (490)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~ 425 (490)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.++++.. +.|...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr-------L~P~~~ 344 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN-------LRPGAN 344 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HSCSHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCCCcC
Confidence 4455666666666666788888888888888775 5776777777777788888888888888877 446666
Q ss_pred hHH
Q 011236 426 LVS 428 (490)
Q Consensus 426 ~~~ 428 (490)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 554
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.38 E-value=0.0032 Score=56.09 Aligned_cols=72 Identities=7% Similarity=-0.050 Sum_probs=45.6
Q ss_pred CCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHH
Q 011236 170 GSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTY 246 (490)
Q Consensus 170 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 246 (490)
.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.. .. .|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al-rL--~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF-NL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hc--CCCcChH
Confidence 355566666555555677777777777776654 566666666666677777777777777665 32 2444454
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.27 E-value=0.0019 Score=60.01 Aligned_cols=96 Identities=7% Similarity=-0.134 Sum_probs=57.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcC-CCcch-hhH
Q 011236 357 LGYSQKGMIEKADAVLKEIVKKG---KTPT----PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKF-WRPKP-SLV 427 (490)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~p~~-~~~ 427 (490)
..+.+.|++++|+.++++..+.. +.|+ ..+++.+...|...|++++|+.++++++.......| -.|+. .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33455667777777777665431 1111 235677777777777777777777777664432222 22333 456
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 428 SSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 428 ~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
+.|...|...|++++|+.+++++.+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6777777777777777777766544
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.26 E-value=0.00055 Score=48.71 Aligned_cols=56 Identities=18% Similarity=0.326 Sum_probs=33.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 356 LLGYSQKGMIEKADAVLKEIVKKGKTPTPN-SWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
...+.+.|++++|...|++..+..+. +.. .|..+..+|...|++++|...|+++++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455566666666666666655433 444 566666666666666666666666665
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.26 E-value=0.00091 Score=62.06 Aligned_cols=93 Identities=5% Similarity=-0.138 Sum_probs=69.4
Q ss_pred hcCCHHHHHHHHHHHHHc-----CCC-CC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcC-CCcch-hhHHHHH
Q 011236 361 QKGMIEKADAVLKEIVKK-----GKT-PT-PNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKF-WRPKP-SLVSSIL 431 (490)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~-----~~~-p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~p~~-~~~~~l~ 431 (490)
..|++++|+.++++.++. |.. |+ ..+++.|..+|...|++++|..+++++++......| -.|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888898888887652 221 22 357888999999999999999999998875543334 23444 5788889
Q ss_pred HHHHcCCCHHHHHHHHHHHHhc
Q 011236 432 DWLGDNRDVEEVEAFVSSLKIK 453 (490)
Q Consensus 432 ~~~~~~g~~~~a~~~~~~~~~~ 453 (490)
..|...|++++|+.+++++.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999998877653
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.14 E-value=0.0017 Score=46.06 Aligned_cols=59 Identities=19% Similarity=0.186 Sum_probs=37.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCch-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011236 321 LGSLVKIGELEEAEKMLEEWELSCYCYDFR-VPNIILLGYSQKGMIEKADAVLKEIVKKGK 380 (490)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 380 (490)
...+.+.|++++|...+++..+.. +.+.. .+..+..+|...|++++|...|++.++.++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 445556677777777777766642 22344 566666667777777777777777766543
No 215
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.13 E-value=0.00045 Score=62.91 Aligned_cols=249 Identities=12% Similarity=0.107 Sum_probs=141.8
Q ss_pred hhccCCCCcccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 011236 28 YRAVKPVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDH 107 (490)
Q Consensus 28 ~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 107 (490)
.+...|.-|..|-.+....++..+++...++ .-|+..|..++....+.|.+++-+..+....+.. -++..-
T Consensus 49 ~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~ID 119 (624)
T 3lvg_A 49 ERCNEPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVE 119 (624)
T ss_dssp SSCCCCCCSSSHHHHTTTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTT
T ss_pred HHhCCccHHHHHHHHHHccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccH
Confidence 3344677788888888888887777763332 3467778888888888888888888877666553 355666
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC--------------------
Q 011236 108 AVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMG-------------------- 167 (490)
Q Consensus 108 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------------------- 167 (490)
+.++-+|++.+++.+-.+++. +||..-...+.+-|...|.++.|.-+|..+....
T Consensus 120 teLi~ayAk~~rL~elEefl~-----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 120 TELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp HHHHHHHHTSCSSSTTTSTTS-----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT
T ss_pred HHHHHHHHhhCcHHHHHHHHc-----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888887655443321 2444444555556666666666655554432110
Q ss_pred CCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHH
Q 011236 168 SFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYS 247 (490)
Q Consensus 168 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 247 (490)
-.-++.||-.+-.+|...+.+.-|.-+--.++-. || ....++..|-..|.+++-+.+++.-. ... ......|+
T Consensus 195 KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl-glE-rAHmGmFT 267 (624)
T 3lvg_A 195 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL-GLE-RAHMGMFT 267 (624)
T ss_dssp TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT-TST-TCCHHHHH
T ss_pred hcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh-CCC-chhHHHHH
Confidence 1236677888888888777777666554444321 11 12234555666666666666666554 211 13445555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhcc-C-----CChhhHHHHHHHHHhcCChhHH
Q 011236 248 TVANYYIIAGLKEKAIIYLKKCEDIVSK-S-----KDALGYNHLISHYASLGNKDEM 298 (490)
Q Consensus 248 ~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~~~~~~a 298 (490)
-|.-.|++- .+++..+.++........ + .....|..++-.|++-.+++.|
T Consensus 268 ELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 268 ELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp HHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 555555544 334444433332221111 0 1233455555555555555544
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.09 E-value=0.0094 Score=60.86 Aligned_cols=28 Identities=7% Similarity=0.046 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHH
Q 011236 206 DNFSYRICINSYGARSELSSMENVLQEM 233 (490)
Q Consensus 206 ~~~~~~~li~~~~~~g~~~~a~~~~~~~ 233 (490)
+...|..+...+.+.|+++.|++.|.++
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3344444555555555555555555444
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.05 E-value=0.0027 Score=58.93 Aligned_cols=103 Identities=12% Similarity=0.011 Sum_probs=76.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC---CCCC----chhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCH-HH
Q 011236 321 LGSLVKIGELEEAEKMLEEWELSC---YCYD----FRVPNIILLGYSQKGMIEKADAVLKEIVKK-----GK-TPTP-NS 386 (490)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~-~~ 386 (490)
+..+.+.|++++|..++++..+.. +.|+ ..+++.+...|...|++++|+.++++.++. |. .|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444567889999999999887542 2222 347888999999999999999999988642 32 2332 46
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchh
Q 011236 387 WSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPS 425 (490)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~ 425 (490)
++.|...|...|++++|..+++++++......| |+..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG--~~Hp 410 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG--REHS 410 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--TTSH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC--CCCh
Confidence 899999999999999999999999885543334 5543
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.95 E-value=0.0034 Score=58.24 Aligned_cols=88 Identities=8% Similarity=-0.096 Sum_probs=69.6
Q ss_pred ccCCHHHHHHHHHHHHHhhhcCcC-CCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhc-----ccc----hhhhHHHH
Q 011236 396 DKNNMEKAFECMKEALAVHEENKF-WRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIK-----VQK----RNMYHALT 464 (490)
Q Consensus 396 ~~~~~~~a~~~~~~~~~~~~~~~~-~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~----~~~~~~l~ 464 (490)
..|++++|..+++++++......| -.|+. .+++.+..+|...|++++|+.+++++.+. |+. ...++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 458999999999999885532233 12333 67889999999999999999999987653 333 77899999
Q ss_pred HHHHhcC--CcHHHHHHHHHh
Q 011236 465 EAHIRSG--QEVDGLLESMKA 483 (490)
Q Consensus 465 ~~~~~~g--~~a~~~~~~m~~ 483 (490)
..|...| ++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 9999999 889999887653
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.86 E-value=0.011 Score=41.21 Aligned_cols=65 Identities=9% Similarity=-0.032 Sum_probs=41.4
Q ss_pred CCchhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 347 YDFRVPNIILLGYSQKGM---IEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
.+...+..+..++...++ .++|..++++.++.++. ++.....+...+.+.|++++|+..|+++++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555543333 56777777777766554 666666666777777777777777777766
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.70 E-value=0.026 Score=40.34 Aligned_cols=79 Identities=11% Similarity=-0.001 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcC-CCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhh
Q 011236 383 TPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKF-WRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMY 460 (490)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~ 460 (490)
+..-+..+...+.+.+++..|...|+.+++..+.... -.+....+..+..++.+.|+++.|...++++.+..|. ..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4445566777778888888888888887774432211 1234467777778888888888888888888877777 4443
Q ss_pred H
Q 011236 461 H 461 (490)
Q Consensus 461 ~ 461 (490)
+
T Consensus 84 ~ 84 (104)
T 2v5f_A 84 G 84 (104)
T ss_dssp H
T ss_pred h
Confidence 3
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.65 E-value=0.013 Score=40.95 Aligned_cols=66 Identities=5% Similarity=-0.029 Sum_probs=37.2
Q ss_pred CChhhHHHHHHHHHhhcC---HHHHHHHHHHccccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011236 102 FSVHDHAVQLDLIGKVRG---LESAETYFNSLNDEDK-VDKLYGALLNCYVREGLVDESLSLMQKMKEMG 167 (490)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 167 (490)
.++..+..+..++...++ .++|..+|++....+| ++.+...+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 344455555554443333 4566666666666555 35555555666666666666666666666553
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.62 E-value=0.037 Score=42.27 Aligned_cols=83 Identities=13% Similarity=0.041 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhhhcCcCCCc--chhhHHHHHHHHHcCCCHH
Q 011236 367 KADAVLKEIVKKGKTPTPNSWSIIAAGYADKN---NMEKAFECMKEALAVHEENKFWRP--KPSLVSSILDWLGDNRDVE 441 (490)
Q Consensus 367 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 441 (490)
.+.+-|.+..+.|. ++..+...+..++++.+ +.++++.+|++..+ .. .| +...+..+.-++.+.|+++
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~-----~~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP-----KG-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-----HS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----cC-CccchHHHHHHHHHHHHHccCHH
Confidence 34444444444433 35555555555555555 34455555555554 11 12 1233344444555555555
Q ss_pred HHHHHHHHHHhcccc
Q 011236 442 EVEAFVSSLKIKVQK 456 (490)
Q Consensus 442 ~a~~~~~~~~~~~~~ 456 (490)
+|.+.++.+.+..|.
T Consensus 89 ~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCC
Confidence 555555555555554
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.58 E-value=0.015 Score=44.37 Aligned_cols=81 Identities=19% Similarity=0.136 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCCHHHHH
Q 011236 330 LEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKG---MIEKADAVLKEIVKKGKTP--TPNSWSIIAAGYADKNNMEKAF 404 (490)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~ 404 (490)
...+++-|.+..+.|. ++..+...+..++++.+ +++++..+|+...+.+ .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555443 45556566666777766 5557777777776654 12 3445556666677777777777
Q ss_pred HHHHHHHH
Q 011236 405 ECMKEALA 412 (490)
Q Consensus 405 ~~~~~~~~ 412 (490)
++++.+++
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777777
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.45 E-value=0.2 Score=50.90 Aligned_cols=154 Identities=11% Similarity=0.058 Sum_probs=96.7
Q ss_pred HHHhcCChhHHHH-HHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHH
Q 011236 78 QLRSRKRFKHALQ-VSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDES 156 (490)
Q Consensus 78 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 156 (490)
.....+++++|.+ ++.. + ++......++..+.+.|..+.|.++.+. |. .-.......|++++|
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~~-----~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD-----QD-----QKFELALKVGQLTLA 671 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC-----HH-----HHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC-----cc-----hheehhhhcCCHHHH
Confidence 3345788888866 4411 1 1133346677777888888888876531 11 113345667888888
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 011236 157 LSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEMESQ 236 (490)
Q Consensus 157 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 236 (490)
.++.+.+ .+...|..|...+.+.++++.|.++|..+.. |..+...+...|+.+...++-+... .
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~-~ 735 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE-T 735 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH-H
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH-H
Confidence 8876433 2667888888888888888888888887743 3345555555677776666555554 3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011236 237 SHISMDWGTYSTVANYYIIAGLKEKAIIYLKKC 269 (490)
Q Consensus 237 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 269 (490)
.|- ++....+|.+.|++++|++++.++
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 332 333445566677777777766653
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.04 E-value=8e-06 Score=73.99 Aligned_cols=113 Identities=5% Similarity=-0.033 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHh
Q 011236 70 LELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVR 149 (490)
Q Consensus 70 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~ 149 (490)
..|..|..+....++..+|++-| ++. -++..|..++..+.+.|.+++-..++....+...++.+=+.|+-+|++
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 128 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHT
T ss_pred cHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHh
Confidence 34444444444444444443322 111 244444444445545555555444444444333333333444445555
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHH
Q 011236 150 EGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVL 195 (490)
Q Consensus 150 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 195 (490)
.++..+-.+++. .||..-...+.+-|...|.++.|.-+|
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKily 167 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLY 167 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTG
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHH
Confidence 444433322221 134444444444444444444444444
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.02 E-value=0.15 Score=38.36 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=62.9
Q ss_pred CChhhHHHHHHHHHhcCCh------hHHHHHHHHHHHhcCCCChh-hHHHHHH------HHHhcCCHHHHHHHHHHHHhc
Q 011236 277 KDALGYNHLISHYASLGNK------DEMMKFWGLQKIKCKKQLNR-DYITMLG------SLVKIGELEEAEKMLEEWELS 343 (490)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~~ 343 (490)
.|..+|-..+...-+.|++ ++..++|++....-+ |+.. .+...+. .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~P-p~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALP-PDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSC-GGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCC-ccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3445555555555555555 566666666655544 3321 1111111 112336778888888887665
Q ss_pred CCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011236 344 CYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAA 392 (490)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 392 (490)
.-.. ...|.....--.+.|++.+|.+++.+.+..+++| .......+.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 2222 4455555555567888888888888888877664 333343333
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.00 E-value=0.069 Score=38.08 Aligned_cols=61 Identities=7% Similarity=-0.012 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 352 PNIILLGYSQKGMIEKADAVLKEIVKKG------KTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
+..+...+.+.|+++.|...|+...+.- -.+....+..+..++.+.|++++|..++++++.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3445555556666666666665554421 112345566666777777777777777777766
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.087 Score=41.32 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHH
Q 011236 207 NFSYRICINSYGARSELSSMENVLQEM 233 (490)
Q Consensus 207 ~~~~~~li~~~~~~g~~~~a~~~~~~~ 233 (490)
...|..|.......|+++-|++.|.+.
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 444555555555555555555555444
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.83 E-value=0.041 Score=46.97 Aligned_cols=91 Identities=10% Similarity=0.037 Sum_probs=62.3
Q ss_pred HHHHHHHHHHccccCCC---hhHHHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-CCcCc
Q 011236 120 LESAETYFNSLNDEDKV---DKLYGALLNCYVRE-----GLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNT-GQHEK 190 (490)
Q Consensus 120 ~~~A~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~ 190 (490)
...|...+++..+.+|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 35677777777777765 45677777777773 77888888888877765433466777777777764 77777
Q ss_pred HHHHHHHHHHCCCC--CCHHHH
Q 011236 191 IPDVLLDMKENGVP--PDNFSY 210 (490)
Q Consensus 191 a~~~~~~m~~~~~~--p~~~~~ 210 (490)
+.+.+++.++.... |+....
T Consensus 259 a~~~L~kAL~a~p~~~P~~~la 280 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLL 280 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHH
Confidence 77777777776554 554333
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.5 Score=37.07 Aligned_cols=99 Identities=11% Similarity=0.070 Sum_probs=46.0
Q ss_pred HhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHH
Q 011236 290 ASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKAD 369 (490)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 369 (490)
...|+++.|.++.+.+ .+...|..|.......|+++-|++.|..... +..+.-.|.-.|+.++-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3445555555554422 2344555555555555555555555554322 233444444455554444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 011236 370 AVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKE 409 (490)
Q Consensus 370 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 409 (490)
++-+.....| -++.....+...|+++++.++|.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4333333322 133444444455555555555544
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.75 E-value=2 Score=43.53 Aligned_cols=154 Identities=13% Similarity=0.042 Sum_probs=62.0
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhh--HHHHHHHHHhcCC
Q 011236 217 YGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALG--YNHLISHYASLGN 294 (490)
Q Consensus 217 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 294 (490)
+.-.|+-+....++..+.+.. .-++.-...+.-++...|+.+.+..+.+.+..... |.... -.++..+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~d--p~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGRQELADDLITKMLASDE--SLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSC--HHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhcCCCC
Confidence 344555555555555544111 01111112222233345565555555555543211 11111 1123344555566
Q ss_pred hhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCH-HHHHHHHH
Q 011236 295 KDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMI-EKADAVLK 373 (490)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 373 (490)
.....+++..+... ...+......+.-++...|+.+.+.++++.+.+. ..|.+..-..+.-+....|.. .++..++.
T Consensus 576 ~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~-~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS-HNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 55555555544332 1122222222222333344444445555444333 233333333333333333332 34555555
Q ss_pred HHH
Q 011236 374 EIV 376 (490)
Q Consensus 374 ~m~ 376 (490)
.+.
T Consensus 654 ~L~ 656 (963)
T 4ady_A 654 PLT 656 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 554
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.70 E-value=0.09 Score=44.93 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhhhccCCChhhHHHHHHHHHh-----cCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc-CCHHHH
Q 011236 260 EKAIIYLKKCEDIVSKSKDALGYNHLISHYAS-----LGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKI-GELEEA 333 (490)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a 333 (490)
..|...+++..+..+.-.+...|..+...|.. -|+.++|.+.|++.+...+..+..++......++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 34445555544433211134456666666666 366666666666666665433455556666666653 666666
Q ss_pred HHHHHHHHhcCCC
Q 011236 334 EKMLEEWELSCYC 346 (490)
Q Consensus 334 ~~~~~~~~~~~~~ 346 (490)
.+.+++.......
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 6666666665444
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.66 E-value=2.2 Score=43.28 Aligned_cols=254 Identities=16% Similarity=0.036 Sum_probs=132.8
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc-------cCCChhhHHHHH
Q 011236 216 SYGARSELSSMENVLQEMESQSHISMD--WGTYSTVANYYIIAGLKEKAIIYLKKCEDIVS-------KSKDALGYNHLI 286 (490)
Q Consensus 216 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~ 286 (490)
+....|+.++++.+++... ..+-..+ ...=..+.-+....|..+++..++........ . +....-.++.
T Consensus 383 GlIh~g~~~~gl~~L~~yL-~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~-~~ir~gAaLG 460 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYL-PGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDV-DVLLHGASLG 460 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTS-TTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHH-HHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCcccccccccc-HHHHHHHHHH
Confidence 4556788888888877665 2110122 22333444556666766677777766554322 0 1111122232
Q ss_pred HHHHhcCC-hhHHHHHHHHHHHhcCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcC
Q 011236 287 SHYASLGN-KDEMMKFWGLQKIKCKKQLNR--DYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKG 363 (490)
Q Consensus 287 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 363 (490)
-+.+-.|. -+++.+.+..+..... +... .-.++...++-.|+.+....++..+.+. ..-+..-...+.-++...|
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-QHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTT
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHhhhCC
Confidence 23333332 2455666655555332 1111 1223344455678888888888877653 2212222333444455778
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHH-HH---HHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCC
Q 011236 364 MIEKADAVLKEIVKKGKTPTPNS-WS---IIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRD 439 (490)
Q Consensus 364 ~~~~A~~~~~~m~~~~~~p~~~~-~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 439 (490)
+.+.+..+++.+... .++.+ |. .+.-+|+..|+.....++++.+.. ....+..-...+.-++...|+
T Consensus 539 ~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~------d~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 539 RQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS------DSNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp CGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH------CSCHHHHHHHHHHHHHHTSSS
T ss_pred ChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc------CCcHHHHHHHHHHHHhhccCC
Confidence 888888888888764 24433 22 344567788887777778888876 222222222233334444566
Q ss_pred HHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC---CcHHHHHHHHH
Q 011236 440 VEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG---QEVDGLLESMK 482 (490)
Q Consensus 440 ~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g---~~a~~~~~~m~ 482 (490)
.+.+.++++.+.+.+.+ .+.-..+.-+....| .+|++.+..+.
T Consensus 610 ~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 610 YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 66666666655544333 333333333333343 56777777665
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.59 E-value=0.25 Score=37.24 Aligned_cols=103 Identities=9% Similarity=0.072 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCCH------HHHHHHHHHHhhhhccCCChhhHHHHHHH------HHhcCChhHHHHHHHHHHHhcC
Q 011236 243 WGTYSTVANYYIIAGLK------EKAIIYLKKCEDIVSKSKDALGYNHLISH------YASLGNKDEMMKFWGLQKIKCK 310 (490)
Q Consensus 243 ~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~~ 310 (490)
..+|-..+...-+.|+. ++..++|++.....++ .....|...+.. +...++.++|.++|+.+...+.
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp-~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPP-DKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCG-GGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCc-cccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 44444445555555555 5666666666654442 111111111111 1234788888888888877644
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 011236 311 KQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCY 347 (490)
Q Consensus 311 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 347 (490)
.. ...|.....--.+.|++..|.+++......+..|
T Consensus 92 kF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 92 KF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 33 5566666666677888999999988888876554
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.39 E-value=0.38 Score=35.24 Aligned_cols=88 Identities=11% Similarity=-0.017 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH---HHHHHHHHHHhhhcCcCCCc--chhhHHHHHHHHHc
Q 011236 362 KGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEK---AFECMKEALAVHEENKFWRP--KPSLVSSILDWLGD 436 (490)
Q Consensus 362 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~ 436 (490)
......+.+-|.+....|. |+..+--.+..++.+..+... ++.++++... .+ .| .......+.-++.+
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-----~~-~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-----KG-SKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-----TS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----cC-CcchHHHHHHHHHHHHHH
Confidence 3344455555555555444 566666666777777766554 6677776655 21 23 22334455557777
Q ss_pred CCCHHHHHHHHHHHHhcccc
Q 011236 437 NRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 437 ~g~~~~a~~~~~~~~~~~~~ 456 (490)
.|+++.|.+.++.+.+..|.
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTT
T ss_pred hhhHHHHHHHHHHHHHhCCC
Confidence 77888888777777777775
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.15 E-value=2 Score=39.85 Aligned_cols=164 Identities=7% Similarity=-0.007 Sum_probs=83.9
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHC--CCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHh---CCCCCCC--HHH
Q 011236 176 NGIMCLYTNTGQHEKIPDVLLDMKEN--GVPPD---NFSYRICINSYGARSELSSMENVLQEMES---QSHISMD--WGT 245 (490)
Q Consensus 176 ~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~--~~~ 245 (490)
..|...+...|++.+|.+++..+... |.... ...+...++.|...+++..|..++.++.. .....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34566666777777777777766432 21111 13455566777778888888777776531 1111122 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHH----HHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHH
Q 011236 246 YSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHL----ISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITML 321 (490)
Q Consensus 246 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 321 (490)
|...+..+...+++.+|-+.|.++........|...+..+ +.+..-.+....-..++.........++...|..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 4556667777788888777777665432211233222221 112222222222223333233333335556677777
Q ss_pred HHHHhc--CCHHHHHHHHHH
Q 011236 322 GSLVKI--GELEEAEKMLEE 339 (490)
Q Consensus 322 ~~~~~~--~~~~~a~~~~~~ 339 (490)
.+|... .+++...+.|..
T Consensus 301 k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCS
T ss_pred HHHHhchHhhhHHHHHHHHH
Confidence 777553 345555554443
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.87 E-value=0.81 Score=33.77 Aligned_cols=57 Identities=19% Similarity=0.143 Sum_probs=22.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 355 ILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
-++.+...|+-+.-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.++.+
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33333444444444444433222 1223333344444444444444444444444443
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.85 E-value=0.82 Score=33.74 Aligned_cols=139 Identities=13% Similarity=-0.004 Sum_probs=84.5
Q ss_pred hcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 011236 291 SLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADA 370 (490)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 370 (490)
-.|..++..++..+.... .+..-|+-+|.-....-+-+-..++++.+-+. .|. ..+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 356666677766655544 23444555554444455555555555544322 222 12344443333
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 011236 371 VLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSL 450 (490)
Q Consensus 371 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 450 (490)
.+-.+- .+.......+..+..+|.-+.-.+++.+.+. ...|++.....+..+|.+.|+..+|.+++.++
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK------NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc------cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 332221 1334455566777788888888888877543 45688888888999999999999999999998
Q ss_pred Hhcccc
Q 011236 451 KIKVQK 456 (490)
Q Consensus 451 ~~~~~~ 456 (490)
.+.|.+
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 888765
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.80 E-value=0.11 Score=38.11 Aligned_cols=80 Identities=16% Similarity=0.122 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHH---HHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 011236 332 EAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEK---ADAVLKEIVKKG-KTPTPNSWSIIAAGYADKNNMEKAFECM 407 (490)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 407 (490)
.+.+-+......|. ++..+-..+..++.+...... ++.+++.+...+ +.-.....-.|.-++.+.|++++|.+++
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444443333332 333443344445555444333 555555554432 1002223334445555666666666666
Q ss_pred HHHHH
Q 011236 408 KEALA 412 (490)
Q Consensus 408 ~~~~~ 412 (490)
+.+++
T Consensus 98 ~~lL~ 102 (126)
T 1nzn_A 98 RGLLQ 102 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 240
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.76 E-value=3.3 Score=40.22 Aligned_cols=115 Identities=7% Similarity=-0.047 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCchhHHH----HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 011236 329 ELEEAEKMLEEWELSCYCYDFRVPNI----ILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAF 404 (490)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 404 (490)
+.+.|...+....+.. ..+...... +.......+...++...+....... ++.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 5667777776665432 222222222 2222223342445555555544332 23333334444444567777777
Q ss_pred HHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011236 405 ECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 405 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 452 (490)
..|+.|.. ..........-+.+++...|+.++|..+|+.+..
T Consensus 306 ~~~~~l~~------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPM------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCT------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccc------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77766543 1111233344455566667777777777777654
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.56 E-value=0.16 Score=46.47 Aligned_cols=79 Identities=11% Similarity=0.071 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHH
Q 011236 353 NIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILD 432 (490)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 432 (490)
..++..+...|++++|...+..+....+- +...|..++.++.+.|+..+|++.|+...+...++.|+.|+..+-...-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45677788899999999998888877654 77889999999999999999999998887766666789998876544433
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.07 E-value=0.95 Score=31.29 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHH
Q 011236 399 NMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAH 467 (490)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~ 467 (490)
+.-+..+-++.+.. ..+.|++....+.+++|.+..++..|.++|+-++..... ..+|..+++-+
T Consensus 25 D~~e~rrglN~l~~-----~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVG-----YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTT-----SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhc-----cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 45556666666665 667788888888888888888888888888877766555 55666666543
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.02 E-value=1.2 Score=44.16 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=32.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011236 359 YSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEA 410 (490)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 410 (490)
+...|+++.|+.+-++....-+. +..+|..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44566677777777666665332 4566777777777777777776666554
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.79 E-value=4.2 Score=37.72 Aligned_cols=95 Identities=15% Similarity=0.143 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----chhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCH--HH
Q 011236 318 ITMLGSLVKIGELEEAEKMLEEWELSCYCYD-----FRVPNIILLGYSQKGMIEKADAVLKEIVK----KGKTPTP--NS 386 (490)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~~--~~ 386 (490)
..|...+...|++.+|..++..+...-...+ ...+...++.|...+++.+|..+++++.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4566777777888888888877754312111 23455666777788888888887777642 2222222 24
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 387 WSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
|...+..+...+++.+|.+.|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 56666677778888888887777765
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.75 E-value=0.32 Score=44.34 Aligned_cols=129 Identities=8% Similarity=-0.059 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHH---hcCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhhcCHH-HHHHHHHHccccCCChhHHHH
Q 011236 68 SELELQRVIRQLR---SRKRFKHALQVSEWMSGQGL-AFSVHDHAVQLDLIGKVRGLE-SAETYFNSLNDEDKVDKLYGA 142 (490)
Q Consensus 68 ~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~ 142 (490)
|...+..++.... ..|+.+.|.+.++.+...-- ++=+... ...+- ....-+++.. ..+...
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~---------~~~w~~~~r~~l~~~~-----~~a~~~ 176 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR---------DFQFVEPFATALVEDK-----VLAHTA 176 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT---------TSTTHHHHHHHHHHHH-----HHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC---------chhHHHHHHHHHHHHH-----HHHHHH
Confidence 4444555554432 35788888888888877532 1111110 01111 1111111111 123445
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHHHHHHHH-----CCCCCCHHHHH
Q 011236 143 LLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDVLLDMKE-----NGVPPDNFSYR 211 (490)
Q Consensus 143 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~ 211 (490)
++..+...|++++|+..+..+....+- +...|..+|.++.+.|+..+|++.|+.+.+ .|+.|...+-.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 566666777777777777766655332 556677777777777777777777766543 36777666543
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.66 E-value=1 Score=44.63 Aligned_cols=53 Identities=17% Similarity=-0.013 Sum_probs=40.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011236 322 GSLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEI 375 (490)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 375 (490)
+-|...|+++.|..+-++.... .+-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455678888888888888775 3335668888888888888888888877766
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.95 E-value=2.4 Score=31.16 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHH
Q 011236 399 NMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAH 467 (490)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~ 467 (490)
|.-+..+-++.... ..+.|++......+++|.+.+|+..|.++|+-++..... ..+|..+++-+
T Consensus 68 D~wElrrglN~l~~-----~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLVG-----YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHTT-----SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhc-----cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 34445556666655 667888888888888888888888888888888776655 56677666554
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.23 E-value=3.8 Score=43.37 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=12.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 011236 248 TVANYYIIAGLKEKAIIYLKKC 269 (490)
Q Consensus 248 ~li~~~~~~~~~~~a~~~~~~~ 269 (490)
.+..+|...|++++|.+.|.+.
T Consensus 847 l~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 847 LKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 3455566666666666666553
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.23 E-value=7.2 Score=34.18 Aligned_cols=168 Identities=12% Similarity=0.053 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHHHH----HHHHHHCCCCCCHHHHHHHHH
Q 011236 140 YGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIPDV----LLDMKENGVPPDNFSYRICIN 215 (490)
Q Consensus 140 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~li~ 215 (490)
|.++..-|.+.+++++|++++..-.. .+.+.|+...+-++ ++-..+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44455556667777777766543211 12233443333322 233444556666666666666
Q ss_pred HHhccCChH-HHHHHHHHHH----h-CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHH
Q 011236 216 SYGARSELS-SMENVLQEME----S-QSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHY 289 (490)
Q Consensus 216 ~~~~~g~~~-~a~~~~~~~~----~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (490)
.+.....-+ .=..+.+++. . .....-|......+...|.+.+++.+|...|-. +.. ++...|..++.-+
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il----g~~-~s~~~~a~mL~ew 177 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL----GTK-ESPEVLARMEYEW 177 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT----SCT-THHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh----cCC-chHHHHHHHHHHH
Confidence 555443211 1122222222 0 222335677778899999999999999888742 322 3335665555444
Q ss_pred HhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011236 290 ASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEEWEL 342 (490)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (490)
...+...+ ++...-.+++. |...++...|..+++...+
T Consensus 178 ~~~~~~~e--------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESHT--------------APLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGGG--------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCcc--------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 44333222 12222223333 4456788888887766553
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.67 E-value=7.9 Score=33.66 Aligned_cols=181 Identities=13% Similarity=0.064 Sum_probs=100.2
Q ss_pred HHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCcCcHH
Q 011236 113 LIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQHEKIP 192 (490)
Q Consensus 113 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 192 (490)
.....|++=+|.+. |.++..-|.+.+++++|++++..-.. .+.+.|+...|-
T Consensus 22 ~~I~~G~yYEAhQ~-------------~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~ 73 (312)
T 2wpv_A 22 NKIKAGDYYEAHQT-------------LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGT 73 (312)
T ss_dssp HHHHHTCHHHHHHH-------------HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHH
T ss_pred HHhhccChHHHHHH-------------HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHH
Confidence 33445555555554 55666677778888888877654322 233445444433
Q ss_pred H----HHHHHHHCCCCCCHHHHHHHHHHHhccCChH-HHHHHHHHHH----hCCC-CCCCHHHHHHHHHHHHHcCCHHHH
Q 011236 193 D----VLLDMKENGVPPDNFSYRICINSYGARSELS-SMENVLQEME----SQSH-ISMDWGTYSTVANYYIIAGLKEKA 262 (490)
Q Consensus 193 ~----~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~~~----~~~~-~~~~~~~~~~li~~~~~~~~~~~a 262 (490)
+ +.+-..+.+++++......++..+.....-+ .=.++++++. ...+ ..-++..+..+...|.+.|++.+|
T Consensus 74 DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A 153 (312)
T 2wpv_A 74 DLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEA 153 (312)
T ss_dssp HHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHH
Confidence 3 3444455677777777777776665533211 1123333332 1111 235678888899999999999999
Q ss_pred HHHHHHHhhhhccCCChhhHHHHHHHHHhc---CChhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011236 263 IIYLKKCEDIVSKSKDALGYNHLISHYASL---GNKDEMMKFWGLQKIKCKKQLNRDYITMLGSLVKIGELEEAEKMLEE 339 (490)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 339 (490)
...|-. +.. .|...+..++.-+... |...++-- ..-.+++. |...|+...|..+++.
T Consensus 154 ~~H~i~----~~~-~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~RaVL~-yL~l~n~~~A~~~~~~ 213 (312)
T 2wpv_A 154 ERYFML----GTH-DSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSRLVFN-YLFISNISFAHESKDI 213 (312)
T ss_dssp HHHHHT----SCH-HHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHHHHHH-HHHTTBHHHHHHHHHH
T ss_pred HHHHHh----CCC-ccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHHHH-HHHhcCHHHHHHHHHH
Confidence 887763 211 1344555555444333 33322211 11222222 4456888888888886
Q ss_pred HH
Q 011236 340 WE 341 (490)
Q Consensus 340 ~~ 341 (490)
..
T Consensus 214 f~ 215 (312)
T 2wpv_A 214 FL 215 (312)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.64 E-value=10 Score=40.18 Aligned_cols=52 Identities=6% Similarity=-0.040 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 011236 109 VQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKM 163 (490)
Q Consensus 109 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 163 (490)
.++..+...+..+.+.++...... +...--.+..++...|++++|.+.|.+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345555566666666665544432 3323334456666777777777777653
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.55 E-value=2.2 Score=31.44 Aligned_cols=73 Identities=8% Similarity=-0.041 Sum_probs=50.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCC
Q 011236 64 GQKISELELQRVIRQLRSRKRF---KHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKV 136 (490)
Q Consensus 64 ~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 136 (490)
+..|+..+--....++.+.... ..++.+++.+.+.+.....+..-.+.-++.+.|+++.|++..+.+.+..|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 5566777777777777766543 467788888777653233455555666777888888888888888887774
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.60 E-value=4.9 Score=29.61 Aligned_cols=69 Identities=10% Similarity=-0.004 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHhhhcCcCCCc--chhhHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 011236 381 TPTPNSWSIIAAGYADKNN---MEKAFECMKEALAVHEENKFWRP--KPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQ 455 (490)
Q Consensus 381 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 455 (490)
.|+..+--.+..++.+..+ ..+++.++++... .+ | ....+..+.-++.+.|+++.|.+..+.+.+..|
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-----~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-----EA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-----HC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----cC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 3444444444444444443 2345555555544 12 2 123333444455556666666666666555555
Q ss_pred c
Q 011236 456 K 456 (490)
Q Consensus 456 ~ 456 (490)
.
T Consensus 110 ~ 110 (134)
T 3o48_A 110 N 110 (134)
T ss_dssp T
T ss_pred C
Confidence 4
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.57 E-value=4.9 Score=37.09 Aligned_cols=98 Identities=16% Similarity=0.041 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCchhHHHH-
Q 011236 280 LGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQL--NRDYITMLGSLVKIGELEEAEKMLEEWELSCY-CYDFRVPNII- 355 (490)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l- 355 (490)
.+...+...|.+.|+++.|.+.|.++......+. ...+...++.+...+++..+...+.++...-. .++....+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3566788888888888888888887777654332 24566677777778888888888777654311 1222221111
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHH
Q 011236 356 ---LLGYSQKGMIEKADAVLKEIVK 377 (490)
Q Consensus 356 ---~~~~~~~g~~~~A~~~~~~m~~ 377 (490)
...+...+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1112345667777666665544
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.44 E-value=3.4 Score=31.81 Aligned_cols=101 Identities=7% Similarity=0.044 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHHHHhhhc---C-----
Q 011236 354 IILLGYSQKGMIEKADAVLKEIVKKG-KTPTP-------NSWSIIAAGYADKNNMEKAFECMKEALAVHEE---N----- 417 (490)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~----- 417 (490)
.-+..+...|.++.|+-+.+.+.... ..|+. .++..+.+++...+++.+|...|+++++.... .
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 34455566667777666655543321 12221 24555666777777777777777776552210 0
Q ss_pred -----------cCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 011236 418 -----------KFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKV 454 (490)
Q Consensus 418 -----------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 454 (490)
....++...-.-+..+|.+.|++++|..+++.+....
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 0111222344456778889999999999988765443
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.43 E-value=3.9 Score=28.31 Aligned_cols=62 Identities=8% Similarity=-0.047 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHH
Q 011236 223 LSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLIS 287 (490)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 287 (490)
.-+..+-++.+- ..++.|++....+.+.+|.+.+++.-|.++|+.++..... ...+|..+++
T Consensus 26 ~~e~rrglN~l~-~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLV-GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHT-TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred HHHHHHHHHHHh-ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 334555555555 5566666666666666666666666666666666654432 2334544443
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.85 E-value=5.9 Score=29.59 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 367 KADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 367 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
+++.+++.+...+..-.....-.|.-++.+.|++++|.++.+.+++
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444454444433221223333444455555555555555555554
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.47 E-value=2.1 Score=36.09 Aligned_cols=56 Identities=21% Similarity=0.146 Sum_probs=38.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011236 323 SLVKIGELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKG 379 (490)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 379 (490)
.+.+.|+++++.+....-++. -+-|...-..|+..+|-.|++++|.+-++...+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 455677777777777766665 23355566667777777777777777777776653
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.66 E-value=5.6 Score=36.73 Aligned_cols=97 Identities=15% Similarity=0.042 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--chhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHH--HH
Q 011236 316 DYITMLGSLVKIGELEEAEKMLEEWELSCYCYD--FRVPNIILLGYSQKGMIEKADAVLKEIVKK---GKTPTPNS--WS 388 (490)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~--~~ 388 (490)
+...+...|.+.|+++.|.+.+.++......+. ...+-.+++.+...+++..+...+.++... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455666666666666666666666665432222 234445555666666666666666655332 22222211 11
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 011236 389 IIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
.-+..+...+++..|.+.|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112223445666666666666555
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.47 E-value=2.7 Score=35.38 Aligned_cols=59 Identities=10% Similarity=-0.023 Sum_probs=42.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCC
Q 011236 77 RQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKV 136 (490)
Q Consensus 77 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 136 (490)
..+.+.|++++|++....-++.. |-+...-..++..+|-.|+++.|..-++...+.+|+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 34456677777777777777766 567777777777777777877777777777666654
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.45 E-value=8 Score=28.46 Aligned_cols=61 Identities=8% Similarity=-0.042 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHH
Q 011236 224 SSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLIS 287 (490)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 287 (490)
-+..+-++.+. ..++.|++....+.+.+|.+.+++.-|.++|+.++.+.. +....|..+++
T Consensus 70 wElrrglN~l~-~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLV-GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHT-TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHh-ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 34555555555 666667777777777777777777777777777666554 23444555543
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.27 E-value=6.4 Score=27.15 Aligned_cols=81 Identities=19% Similarity=0.122 Sum_probs=56.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 011236 81 SRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLM 160 (490)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 160 (490)
-.+..++|..+-+++...+. ...+...-+..+...|++++|..+.+... -||...|-+|.. .+.|-.+++..-+
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA--YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC--CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 44667888888888888762 23233333556678889999988888776 478777776654 4667777777777
Q ss_pred HHHHhcC
Q 011236 161 QKMKEMG 167 (490)
Q Consensus 161 ~~m~~~~ 167 (490)
.++...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 6776664
No 263
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.26 E-value=19 Score=32.57 Aligned_cols=132 Identities=9% Similarity=0.047 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHc-CCHHHHHHHHHHHhhhhccCCChhhH-
Q 011236 208 FSYRICINSYGARSELSSMENVLQEMESQSHISMDW---GTYSTVANYYIIA-GLKEKAIIYLKKCEDIVSKSKDALGY- 282 (490)
Q Consensus 208 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~- 282 (490)
.....|...|.+.|+.++..+++....+-.+..+-. .....+++.+... +..+.-.++..+..+... .+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~r~fl 97 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK--QEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH--HTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 344556667777777777777776664211211211 2233445555443 233333444444433222 122233
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHHhcCCCChh-----hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011236 283 -----NHLISHYASLGNKDEMMKFWGLQKIKCKKQLNR-----DYITMLGSLVKIGELEEAEKMLEEWE 341 (490)
Q Consensus 283 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (490)
.-++..|...|++.+|..++..+.......|.. .+..-++.|...+++.++...+....
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 134555666666666666666655554433322 23344455555666666666665544
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.19 E-value=6.2 Score=27.18 Aligned_cols=81 Identities=12% Similarity=0.118 Sum_probs=57.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 011236 81 SRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLM 160 (490)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 160 (490)
-.+..++|..+-+++...+. ...+...-+..+...|++++|..+.+... .||...|-+|.. .+.|-.+++..-+
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP--WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC--CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 44667888888888888762 23333333556678899999988887776 478777776654 4778888888777
Q ss_pred HHHHhcC
Q 011236 161 QKMKEMG 167 (490)
Q Consensus 161 ~~m~~~~ 167 (490)
.++...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 7777665
No 265
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=86.12 E-value=9.5 Score=33.58 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=10.3
Q ss_pred HHHHHhhcCHHHHHHHHHH
Q 011236 111 LDLIGKVRGLESAETYFNS 129 (490)
Q Consensus 111 ~~~~~~~~~~~~A~~~~~~ 129 (490)
+...+..|+.+-+.-+++.
T Consensus 63 Lh~A~~~g~~~iv~~Ll~~ 81 (337)
T 4g8k_A 63 LHNAVQMSREDIVELLLRH 81 (337)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3444556666655555543
No 266
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=84.32 E-value=3.8 Score=34.87 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=9.7
Q ss_pred HHHHHhhcCHHHHHHHHHH
Q 011236 111 LDLIGKVRGLESAETYFNS 129 (490)
Q Consensus 111 ~~~~~~~~~~~~A~~~~~~ 129 (490)
+...+..|+.+-+..+++.
T Consensus 43 L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 43 LHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 4444555665555555443
No 267
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.80 E-value=13 Score=27.80 Aligned_cols=81 Identities=10% Similarity=-0.002 Sum_probs=58.0
Q ss_pred CCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 011236 380 KTPTPNSWSIIAAGYADKNN---MEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK 456 (490)
Q Consensus 380 ~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 456 (490)
..|+..+--.+..++.+..+ ..+++.++++... .+-.-.......+.-++.+.|++++|.++.+.+.+..|.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-----~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-----EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-----HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 35777777777888888765 4578888888877 221112344556667899999999999999999999987
Q ss_pred ---hhhhHHHHH
Q 011236 457 ---RNMYHALTE 465 (490)
Q Consensus 457 ---~~~~~~l~~ 465 (490)
......+|.
T Consensus 110 n~QA~~Lk~~Ie 121 (144)
T 1y8m_A 110 NKQVGALKSMVE 121 (144)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 444444443
No 268
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.76 E-value=14 Score=28.38 Aligned_cols=61 Identities=5% Similarity=-0.076 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhhccCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 011236 248 TVANYYIIAGLKEKAIIYLKKCEDIVSKSKDA-------LGYNHLISHYASLGNKDEMMKFWGLQKIK 308 (490)
Q Consensus 248 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (490)
.-+..+...|.++.|+-+.+.+.......++. .++..+.+++...+++..|...|++.+..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 34556667777777777666654433211331 24566677777788888888887765443
No 269
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.40 E-value=33 Score=30.98 Aligned_cols=167 Identities=10% Similarity=-0.032 Sum_probs=109.0
Q ss_pred cchHHHHHHHHHhcCCcCcHHHHHHHHHHC-CCCCC---HHHHHHHHHHHhccC-ChHHHHHHHHHHHhCCCCCCCHHHH
Q 011236 172 ALNYNGIMCLYTNTGQHEKIPDVLLDMKEN-GVPPD---NFSYRICINSYGARS-ELSSMENVLQEMESQSHISMDWGTY 246 (490)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~---~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~ 246 (490)
......|...|.+.|+.++..+++...... +.-|- ......++..+.... ..+.-.++..+.. +..- -...+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~-~~a~-~~~r~f 96 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCI-EWAK-QEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH-HHHH-HTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HHHH-HHHHHH
Confidence 345677889999999999999888876432 11122 234667788887643 4444555555554 2211 122222
Q ss_pred ------HHHHHHHHHcCCHHHHHHHHHHHhhhhccCCCh-----hhHHHHHHHHHhcCChhHHHHHHHHHHHhcC--CCC
Q 011236 247 ------STVANYYIIAGLKEKAIIYLKKCEDIVSKSKDA-----LGYNHLISHYASLGNKDEMMKFWGLQKIKCK--KQL 313 (490)
Q Consensus 247 ------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~ 313 (490)
.-++..|...|++.+|..++.++.+.... .|. ..+..-++.|...+++.++...+........ .++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~-~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKK-LDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence 15788999999999999999999886654 333 3355667778889999999999987654432 133
Q ss_pred hhhH----HHHHHHHH-hcCCHHHHHHHHHHHH
Q 011236 314 NRDY----ITMLGSLV-KIGELEEAEKMLEEWE 341 (490)
Q Consensus 314 ~~~~----~~l~~~~~-~~~~~~~a~~~~~~~~ 341 (490)
+... ..-...+. ..+++..|...|-+..
T Consensus 176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 3322 12233345 7889999988887764
No 270
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=78.15 E-value=11 Score=34.73 Aligned_cols=355 Identities=11% Similarity=0.041 Sum_probs=161.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhhcCHHHHHHHHHHccccC-CChhHHHHHHHHHHhcC
Q 011236 75 VIRQLRSRKRFKHALQVSEWMSGQGLAFSVH--DHAVQLDLIGKVRGLESAETYFNSLNDED-KVDKLYGALLNCYVREG 151 (490)
Q Consensus 75 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~li~~~~~~g 151 (490)
.+...+..|+.+-+..++ +.|..++.. .....+...+..|+.+-+.-+++.-...+ .+..-. +.+...+..|
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCC
Confidence 455556777765544444 445433221 12234566678888888888777543322 122112 2344456677
Q ss_pred ChhHHHHHHHHHHhcCCCCCcch---HHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHH
Q 011236 152 LVDESLSLMQKMKEMGSFGSALN---YNGIMCLYTNTGQHEKIPDVLLDMKENGVPPD---NFSYRICINSYGARSELSS 225 (490)
Q Consensus 152 ~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~ 225 (490)
+.+- ++.+.+.|..|+... ++. +...+..|+.+-+..+ .+.+..++ ..-+ +.+...+..|+.+-
T Consensus 92 ~~~~----v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~L----l~~~~~~~~~~~~g~-t~L~~A~~~g~~~~ 161 (437)
T 1n11_A 92 HTNM----VKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLAL----LEKEASQACMTKKGF-TPLHVAAKYGKVRV 161 (437)
T ss_dssp CHHH----HHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHH----HHTTCCSCCCCTTSC-CHHHHHHHTTCHHH
T ss_pred CHHH----HHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHH----HhCCCCCcCCCCCCC-CHHHHHHHcCCHHH
Confidence 7654 444445565554332 233 3344456665544444 44443322 1112 23444556777776
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCCh---hhHHHHHHHHHhcCChhHHHHHH
Q 011236 226 MENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDA---LGYNHLISHYASLGNKDEMMKFW 302 (490)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~ 302 (490)
+..+++.-. ..+. .+.... +.+...+..|+.+-+.-++ +.+.. ++. ..++. +...+..|+.+-+..++
T Consensus 162 v~~Ll~~g~-~~~~-~~~~g~-t~L~~A~~~~~~~~v~~Ll----~~g~~-~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll 232 (437)
T 1n11_A 162 AELLLERDA-HPNA-AGKNGL-TPLHVAVHHNNLDIVKLLL----PRGGS-PHSPAWNGYTP-LHIAAKQNQVEVARSLL 232 (437)
T ss_dssp HHHHHHTTC-CTTC-CCSSCC-CHHHHHHHTTCHHHHHHHG----GGTCC-SCCCCTTCCCH-HHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCC-CCCC-CCCCCC-CHHHHHHHcCCHHHHHHHH----hCCCC-CCCcCCCCCCH-HHHHHHcCCHHHHHHHH
Confidence 655554322 1111 111111 1344556677765444433 33332 222 22333 33445667765555444
Q ss_pred HHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch---hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011236 303 GLQKIKCKKQ---LNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFR---VPNIILLGYSQKGMIEKADAVLKEIV 376 (490)
Q Consensus 303 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 376 (490)
+ .+..+ +....+.+ ...+..|+.+-+ +.+.+.|..++.. -.+ .+...++.|..+-+. .+.
T Consensus 233 ~----~g~~~~~~~~~g~t~L-~~A~~~g~~~~v----~~Ll~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~----~Ll 298 (437)
T 1n11_A 233 Q----YGGSANAESVQGVTPL-HLAAQEGHAEMV----ALLLSKQANGNLGNKSGLT-PLHLVAQEGHVPVAD----VLI 298 (437)
T ss_dssp H----TTCCTTCCCTTCCCHH-HHHHHTTCHHHH----HHHHTTTCCTTCCCTTCCC-HHHHHHHHTCHHHHH----HHH
T ss_pred H----cCCCCCCCCCCCCCHH-HHHHHCCCHHHH----HHHHhcCCCCCCCCCCCCC-HHHHHHHcCCHHHHH----HHH
Confidence 3 33322 22223333 334456665544 4444555444332 222 334445667665443 444
Q ss_pred HcCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchh---hHHHHHHHHHcCCCHHHHHHHHHHH
Q 011236 377 KKGKTPTP---NSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPS---LVSSILDWLGDNRDVEEVEAFVSSL 450 (490)
Q Consensus 377 ~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~ 450 (490)
+.|..++. ..++.|. ..+..|+.+-+.-+ ++ .|..++.. -.+.|. .....|+.+-+..+++
T Consensus 299 ~~g~~~~~~~~~g~t~L~-~A~~~g~~~~v~~L----l~-----~gad~n~~~~~g~t~L~-~A~~~g~~~iv~~Ll~-- 365 (437)
T 1n11_A 299 KHGVMVDATTRMGYTPLH-VASHYGNIKLVKFL----LQ-----HQADVNAKTKLGYSPLH-QAAQQGHTDIVTLLLK-- 365 (437)
T ss_dssp HHTCCTTCCCSSCCCHHH-HHHHSSCSHHHHHH----HH-----TTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHH--
T ss_pred hCCccCCCCCCCCCCHHH-HHHHcCcHHHHHHH----Hh-----cCCCCCCCCCCCCCHHH-HHHHCChHHHHHHHHH--
Confidence 44544332 1222333 33455665543333 33 34444432 122333 3345576655544443
Q ss_pred Hhcccc-----hhhhHHHHHHHHhcC-CcHHHHHHHHHh
Q 011236 451 KIKVQK-----RNMYHALTEAHIRSG-QEVDGLLESMKA 483 (490)
Q Consensus 451 ~~~~~~-----~~~~~~l~~~~~~~g-~~a~~~~~~m~~ 483 (490)
.|.. ..-.+. +....+.| ....++++....
T Consensus 366 --~ga~~~~~~~~g~t~-l~~A~~~g~~~~~~~l~~~~~ 401 (437)
T 1n11_A 366 --NGASPNEVSSDGTTP-LAIAKRLGYISVTDVLKVVTD 401 (437)
T ss_dssp --TTCCSCCCCSSSCCH-HHHHHHTTCHHHHHHHHHHCC
T ss_pred --CcCCCCCCCCCCCCH-HHHHHHcCcHHHHHHHHhccc
Confidence 3322 122222 33345556 566667666543
No 271
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=77.47 E-value=13 Score=33.15 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHH
Q 011236 352 PNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNN--MEKAFECMKEALA 412 (490)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~ 412 (490)
.+.++.-|...|+.++|.+.++++..-... ...+...+..++-+.++ .+....++..+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~ 281 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWK 281 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 355677777788888888887777431111 12334444455554332 3445666666665
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=77.36 E-value=9.4 Score=32.34 Aligned_cols=19 Identities=5% Similarity=0.025 Sum_probs=9.2
Q ss_pred HHHHHhhcCHHHHHHHHHH
Q 011236 111 LDLIGKVRGLESAETYFNS 129 (490)
Q Consensus 111 ~~~~~~~~~~~~A~~~~~~ 129 (490)
+...++.|+.+....+++.
T Consensus 9 L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3344455555555544443
No 273
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=77.32 E-value=7.7 Score=31.84 Aligned_cols=15 Identities=7% Similarity=-0.010 Sum_probs=6.6
Q ss_pred HHhcCCHHHHHHHHH
Q 011236 359 YSQKGMIEKADAVLK 373 (490)
Q Consensus 359 ~~~~g~~~~A~~~~~ 373 (490)
..+.|+.+-+..+++
T Consensus 217 A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 217 AKQRKNVWMINHLQE 231 (240)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHH
Confidence 344455444444443
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.41 E-value=28 Score=27.85 Aligned_cols=51 Identities=12% Similarity=-0.003 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 011236 399 NMEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKV 454 (490)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 454 (490)
...++.++|..|.. .|+--.. ..|......+...|++++|..+|+.-.+.+
T Consensus 94 ~~~~p~~if~~L~~-----~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 94 NFHESENTFKYMFN-----KGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp CHHHHHHHHHHHHH-----HTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 36677777777777 5544443 455666666667777777777777666654
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=73.92 E-value=39 Score=30.01 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=56.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCC--HHHHHHHHHHHHhcccc-----hh
Q 011236 386 SWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRD--VEEVEAFVSSLKIKVQK-----RN 458 (490)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~-----~~ 458 (490)
....++.-|...++.++|.++++++.. ..+.+ ..+...+..++-+.++ .+...+++..+.+.+.. ..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~-----p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~ 292 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEV-----PHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 292 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCC-----TTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccC-----CcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 357778888899999999999998754 11111 2334455556665443 45577778777776644 33
Q ss_pred hhHHHHHHHHhcC---CcHHHHHHHHHh
Q 011236 459 MYHALTEAHIRSG---QEVDGLLESMKA 483 (490)
Q Consensus 459 ~~~~l~~~~~~~g---~~a~~~~~~m~~ 483 (490)
.|..++..+-... ..|..++.++..
T Consensus 293 Gf~~vl~~ldDl~lDiP~A~~~la~~va 320 (358)
T 3eiq_C 293 GYERIYNEIPDINLDVPHSYSVLERFVE 320 (358)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHhccHhhcccccHHHHHHHHHH
Confidence 4444444444444 566666666554
No 276
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=73.79 E-value=16 Score=29.94 Aligned_cols=28 Identities=18% Similarity=0.129 Sum_probs=15.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 011236 144 LNCYVREGLVDESLSLMQKMKEMGSFGS 171 (490)
Q Consensus 144 i~~~~~~g~~~~a~~~~~~m~~~~~~p~ 171 (490)
+...++.|+.+.+..+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3344556666666666665555554443
No 277
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=73.39 E-value=34 Score=29.12 Aligned_cols=7 Identities=14% Similarity=0.273 Sum_probs=2.9
Q ss_pred HhcCChh
Q 011236 148 VREGLVD 154 (490)
Q Consensus 148 ~~~g~~~ 154 (490)
+..|+.+
T Consensus 39 ~~~g~~~ 45 (285)
T 3kea_A 39 IADNNVR 45 (285)
T ss_dssp HHTTCHH
T ss_pred HHcCCHH
Confidence 3344443
No 278
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.29 E-value=19 Score=24.81 Aligned_cols=80 Identities=10% Similarity=0.013 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHH
Q 011236 364 MIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEV 443 (490)
Q Consensus 364 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 443 (490)
..++|..+-+-+...+. ...+--+-+..+...|++++|..+.+.. ..||...|-.|.. .+.|-.+.+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~---------c~pdlepw~ALce--~rlGl~s~l 87 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN---------PWPALEPWFALCE--WHLGLGAAL 87 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC---------CCGGGHHHHHHHH--HHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC---------CCchHHHHHHHHH--HhcccHHHH
Confidence 34555555555544432 1111122233456677777777665543 2466666655533 466777777
Q ss_pred HHHHHHHHhcccc
Q 011236 444 EAFVSSLKIKVQK 456 (490)
Q Consensus 444 ~~~~~~~~~~~~~ 456 (490)
..-+..+...+.+
T Consensus 88 e~rL~~la~sg~p 100 (115)
T 2uwj_G 88 DRRLAGLGGSSDP 100 (115)
T ss_dssp HHHHHHHHTCSSH
T ss_pred HHHHHHHHhCCCH
Confidence 7666666555544
No 279
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.27 E-value=20 Score=24.78 Aligned_cols=80 Identities=11% Similarity=0.036 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHH
Q 011236 364 MIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEV 443 (490)
Q Consensus 364 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 443 (490)
..++|..+-+-+...+. ...+--+-+..+...|++++|..+.+.. ..||...|-.|.. .+.|-.+.+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~---------c~pdlepw~ALce--~rlGl~s~l 88 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL---------AYPDLEPWLALCE--YRLGLGSAL 88 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS---------CCGGGHHHHHHHH--HHHTCHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC---------CCchHHHHHHHHH--HhcccHHHH
Confidence 34555555555544432 1111122233456677777777666553 2466666655533 456766777
Q ss_pred HHHHHHHHhcccc
Q 011236 444 EAFVSSLKIKVQK 456 (490)
Q Consensus 444 ~~~~~~~~~~~~~ 456 (490)
..-+..+...+.+
T Consensus 89 e~rL~~la~sg~p 101 (116)
T 2p58_C 89 ESRLNRLARSQDP 101 (116)
T ss_dssp HHHHHHHTTCCCH
T ss_pred HHHHHHHHhCCCH
Confidence 6666566555544
No 280
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=72.77 E-value=52 Score=29.99 Aligned_cols=352 Identities=12% Similarity=0.067 Sum_probs=166.7
Q ss_pred HHHHHHHcCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhhcCHHHHHHHHHHcc
Q 011236 56 VLDQWVLEGQKISELE--LQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSV--HDHAVQLDLIGKVRGLESAETYFNSLN 131 (490)
Q Consensus 56 ~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~ 131 (490)
+++.+.+.|..++... ..+.+...+..|+.+-+.-+++ .|..++. ..-...+...+..|+.+-+.-+++.-.
T Consensus 29 ~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 104 (437)
T 1n11_A 29 IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104 (437)
T ss_dssp HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCC
Confidence 6777777777765432 2345555667777665555544 3432211 112234556678888887777776533
Q ss_pred ccC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCH
Q 011236 132 DED-KVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGS---ALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDN 207 (490)
Q Consensus 132 ~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 207 (490)
... .+..-++ .+...++.|+.+-+..++ +.+..++ ...++. +...+..|+. ++++.+.+.|..++.
T Consensus 105 ~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~-L~~A~~~g~~----~~v~~Ll~~g~~~~~ 174 (437)
T 1n11_A 105 NPNLATTAGHT-PLHIAAREGHVETVLALL----EKEASQACMTKKGFTP-LHVAAKYGKV----RVAELLLERDAHPNA 174 (437)
T ss_dssp CTTCCCTTCCC-HHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCH-HHHHHHTTCH----HHHHHHHHTTCCTTC
T ss_pred CCCCCCCCCCc-HHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCH-HHHHHHcCCH----HHHHHHHhCCCCCCC
Confidence 222 1222222 344456678776555554 3443322 222233 3344556664 455556666765543
Q ss_pred HH--HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHH
Q 011236 208 FS--YRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHL 285 (490)
Q Consensus 208 ~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 285 (490)
.. -.+.+...+..|+.+-+..+++.-. .... ++...++ .+...+..|+.+-+..+++.-..... .+....+.+
T Consensus 175 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~-~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L 249 (437)
T 1n11_A 175 AGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHS-PAWNGYT-PLHIAAKQNQVEVARSLLQYGGSANA--ESVQGVTPL 249 (437)
T ss_dssp CCSSCCCHHHHHHHTTCHHHHHHHGGGTC-CSCC-CCTTCCC-HHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCC-cCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCCHH
Confidence 21 1234455556777765544443221 1111 2222222 44556677887766666553111111 232333333
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch---hHHHHHHHH
Q 011236 286 ISHYASLGNKDEMMKFWGLQKIKCKKQ---LNRDYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFR---VPNIILLGY 359 (490)
Q Consensus 286 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~ 359 (490)
. ..+..|+.+-+.-++ ..+..+ +....+.+ ...+..|+.+-+ +.+.+.|..++.. -.+ .+...
T Consensus 250 ~-~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L-~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t-~L~~A 318 (437)
T 1n11_A 250 H-LAAQEGHAEMVALLL----SKQANGNLGNKSGLTPL-HLVAQEGHVPVA----DVLIKHGVMVDATTRMGYT-PLHVA 318 (437)
T ss_dssp H-HHHHTTCHHHHHHHH----TTTCCTTCCCTTCCCHH-HHHHHHTCHHHH----HHHHHHTCCTTCCCSSCCC-HHHHH
T ss_pred H-HHHHCCCHHHHHHHH----hcCCCCCCCCCCCCCHH-HHHHHcCCHHHH----HHHHhCCccCCCCCCCCCC-HHHHH
Confidence 3 345567655444443 333322 22222333 334456776544 4444556554432 223 34445
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhh--HHHHHHHH
Q 011236 360 SQKGMIEKADAVLKEIVKKGKTPTPN---SWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSL--VSSILDWL 434 (490)
Q Consensus 360 ~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~--~~~l~~~~ 434 (490)
+..|+.+-+ +.+.+.|..++.. .++.|.. .+..|+.+ +.+..++ .|..|+... -..-+...
T Consensus 319 ~~~g~~~~v----~~Ll~~gad~n~~~~~g~t~L~~-A~~~g~~~----iv~~Ll~-----~ga~~~~~~~~g~t~l~~A 384 (437)
T 1n11_A 319 SHYGNIKLV----KFLLQHQADVNAKTKLGYSPLHQ-AAQQGHTD----IVTLLLK-----NGASPNEVSSDGTTPLAIA 384 (437)
T ss_dssp HHSSCSHHH----HHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHH----HHHHHHH-----TTCCSCCCCSSSCCHHHHH
T ss_pred HHcCcHHHH----HHHHhcCCCCCCCCCCCCCHHHH-HHHCChHH----HHHHHHH-----CcCCCCCCCCCCCCHHHHH
Confidence 567776544 4445556554432 2233333 34456554 3333444 566665421 11222333
Q ss_pred HcCCCHHHHHHHHHHHHh
Q 011236 435 GDNRDVEEVEAFVSSLKI 452 (490)
Q Consensus 435 ~~~g~~~~a~~~~~~~~~ 452 (490)
.+.|. ....++++....
T Consensus 385 ~~~g~-~~~~~~l~~~~~ 401 (437)
T 1n11_A 385 KRLGY-ISVTDVLKVVTD 401 (437)
T ss_dssp HHTTC-HHHHHHHHHHCC
T ss_pred HHcCc-HHHHHHHHhccc
Confidence 44555 344555555543
No 281
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=69.93 E-value=18 Score=28.58 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=4.9
Q ss_pred ccCChHHHHHHH
Q 011236 219 ARSELSSMENVL 230 (490)
Q Consensus 219 ~~g~~~~a~~~~ 230 (490)
..|+.+-+..++
T Consensus 81 ~~~~~~~~~~Ll 92 (201)
T 3hra_A 81 AQGRTEILAYML 92 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 334444443333
No 282
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=68.79 E-value=30 Score=27.04 Aligned_cols=76 Identities=8% Similarity=0.052 Sum_probs=52.1
Q ss_pred CCCcccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 011236 33 PVARNNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQL 111 (490)
Q Consensus 33 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 111 (490)
.-+-..|...|.+.|-+.+.+..+++.+.+.|..-|..-....+....+.|.+. ...+-..+.+.|+ +.......+
T Consensus 32 ~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI--~~~~I~~al 107 (177)
T 3e3v_A 32 LRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGI--DDNIAEDAL 107 (177)
T ss_dssp CCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTC--CHHHHHHHH
T ss_pred cccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCC--CHHHHHHHH
Confidence 344567777787777777888888998888888877766677777766555443 3566677778886 444444433
No 283
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=67.89 E-value=61 Score=28.14 Aligned_cols=167 Identities=8% Similarity=-0.033 Sum_probs=96.1
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHH----HHHHHHhcCCCCCcchHHHHHHHH
Q 011236 107 HAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLS----LMQKMKEMGSFGSALNYNGIMCLY 182 (490)
Q Consensus 107 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~~~~p~~~~~~~l~~~~ 182 (490)
+..+..-|.+.+++++|++++..- ...+.+.|+...|-+ +++...+.+++++......++..+
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344555667778888888876432 233445566655544 355556667788877777777777
Q ss_pred HhcCCcC-cHHHHHHHHHH----CC--CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 011236 183 TNTGQHE-KIPDVLLDMKE----NG--VPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYII 255 (490)
Q Consensus 183 ~~~~~~~-~a~~~~~~m~~----~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (490)
.....-+ .-.++++.+++ .| ..-|+.....+...|.+.|++.+|+..|-. +-.-+...+..++.-+..
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-----~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-----GTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-----SCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-----CCCccHHHHHHHHHHHHH
Confidence 6643222 33455555543 22 234777888889999999999998887631 111134455544444444
Q ss_pred c---CCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011236 256 A---GLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKI 307 (490)
Q Consensus 256 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (490)
. |...++ +...-.+++ .|.-.++...|..+++....
T Consensus 178 ~~~~~~~~e~---------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 178 QVDDIEDSTV---------------AEFFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HTTCCCHHHH---------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred hcCCCCcchH---------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 3 332222 222222222 23456777777777775543
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.44 E-value=40 Score=25.53 Aligned_cols=47 Identities=6% Similarity=-0.057 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 011236 403 AFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKV 454 (490)
Q Consensus 403 a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 454 (490)
+.++|..|.. .|+--.. ..|......+...|++++|..+|+.-.+.+
T Consensus 84 p~~if~~L~~-----~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYN-----HGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHT-----TTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-----CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 6666666655 4443333 344555555556666666666666555544
No 285
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=66.36 E-value=20 Score=31.03 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC----CcHHHHHHHHHhCCC
Q 011236 427 VSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG----QEVDGLLESMKADDI 486 (490)
Q Consensus 427 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g----~~a~~~~~~m~~~~~ 486 (490)
...++.-|...|+.++|.+.++++...... ..+...+..++-+.+ +....++..+.+.|+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
Confidence 345666666677777777777776532222 444445555555543 334555555554443
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.14 E-value=51 Score=26.31 Aligned_cols=54 Identities=11% Similarity=-0.124 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC
Q 011236 259 KEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQ 312 (490)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 312 (490)
..++..+|..|...+....-...|......+...|++.+|.++|+.-+.....|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445666666665555442334445555555555666666666666555554444
No 287
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=64.92 E-value=1e+02 Score=29.81 Aligned_cols=90 Identities=7% Similarity=-0.123 Sum_probs=48.7
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc----hhhhHHHHHH
Q 011236 391 AAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK----RNMYHALTEA 466 (490)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~l~~~ 466 (490)
+..+...|....|...|..... +. +......+.......|..+.+..........+.. +..|..++..
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~------~~--~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~ 459 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVK------SK--SKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKR 459 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT------TC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHh------cC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHH
Confidence 4456677888888888887765 22 2233334445556677777776655443332211 3445555555
Q ss_pred HHh-cC-CcHHHHHHHHHhCCCCC
Q 011236 467 HIR-SG-QEVDGLLESMKADDIDE 488 (490)
Q Consensus 467 ~~~-~g-~~a~~~~~~m~~~~~~p 488 (490)
+.+ .| +..+-.---..+.++.|
T Consensus 460 ~a~~~gv~~~ll~Ai~~~ES~f~p 483 (618)
T 1qsa_A 460 YTSGKEIPQSYAMAIARQESAWNP 483 (618)
T ss_dssp HHTTSSSCHHHHHHHHHHHHTTCT
T ss_pred HHHHcCCCHHHHHHHHHHhCCCCC
Confidence 543 34 54443333344445554
No 288
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.60 E-value=95 Score=29.18 Aligned_cols=62 Identities=8% Similarity=0.036 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC---Ch--hh-HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011236 280 LGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQ---LN--RD-YITMLGSLVKIGELEEAEKMLEEWELS 343 (490)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~--~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 343 (490)
..+|.+++.|...+.++.|..+..+.. .+.. +. .. +-.+.+.+.-.+++.+|.+.+......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 456666777777777777777766442 1111 11 11 123345555677777787777776654
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=62.32 E-value=61 Score=26.24 Aligned_cols=52 Identities=6% Similarity=-0.032 Sum_probs=23.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhhcCHHHHHHHHH
Q 011236 77 RQLRSRKRFKHALQVSEWMSGQGLAFSVH--DHAVQLDLIGKVRGLESAETYFN 128 (490)
Q Consensus 77 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~ 128 (490)
...+..|+.+....+++.+.+.+..++.. .-...+...+..|+.+-+..+++
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 33445566666655655555444322211 11122334445566555554444
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=62.20 E-value=42 Score=27.70 Aligned_cols=91 Identities=15% Similarity=0.060 Sum_probs=53.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC--CCCC----ChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHH
Q 011236 74 RVIRQLRSRKRFKHALQVSEWMSGQ--GLAF----SVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCY 147 (490)
Q Consensus 74 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~ 147 (490)
--++.+...++|++|.+++++..+. +.+. ........+..-.....-.-+..+.+.+.. .+....-...+..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Confidence 4567788899999999998876542 1111 112223333333444444445555555533 34455556666777
Q ss_pred HhcCChhHHHHHHHHHHh
Q 011236 148 VREGLVDESLSLMQKMKE 165 (490)
Q Consensus 148 ~~~g~~~~a~~~~~~m~~ 165 (490)
.+.|+.++|.++|-+...
T Consensus 102 ~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHHH
Confidence 788888888887766543
No 291
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=61.05 E-value=28 Score=28.31 Aligned_cols=17 Identities=6% Similarity=0.003 Sum_probs=7.5
Q ss_pred HHHHhhcCHHHHHHHHH
Q 011236 112 DLIGKVRGLESAETYFN 128 (490)
Q Consensus 112 ~~~~~~~~~~~A~~~~~ 128 (490)
...+..|+.+-+..+++
T Consensus 81 ~~A~~~~~~~~v~~Ll~ 97 (240)
T 3eu9_A 81 HWATRQGHLSMVVQLMK 97 (240)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 33344455544444443
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.91 E-value=54 Score=25.18 Aligned_cols=49 Identities=4% Similarity=-0.079 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 011236 401 EKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKV 454 (490)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 454 (490)
+.+.++|..|.. .|+--.. ..|......+...|++.+|.++|+.-.+.+
T Consensus 77 ~~p~~if~~L~~-----~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 77 NEPLDMYSYLHN-----QGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp SCHHHHHHHHHH-----TTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHH-----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 447777777776 5554444 455566666677777777777777766655
No 293
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=59.45 E-value=27 Score=23.99 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=34.0
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHH
Q 011236 91 VSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESL 157 (490)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 157 (490)
+++.+.+.|+ .+......+-. .......+.|.++++.++.+||+ +|..++.++...|+..-|.
T Consensus 26 vld~L~~~~v-lt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~--Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 26 LWDVLLSREL-FRPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQ--ALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp THHHHHHTTS-SCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTT--HHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHcCC-CCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChH--HHHHHHHHHHHcCcHHHHH
Confidence 5555555553 33333332221 00113567777777777776665 4777777776656654443
No 294
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=58.92 E-value=27 Score=30.83 Aligned_cols=46 Identities=11% Similarity=0.118 Sum_probs=22.7
Q ss_pred hHHHHHHHHHcCCCHH-HHHHHHHHHHhcccc-hhhhHHHHHHHHhcC
Q 011236 426 LVSSILDWLGDNRDVE-EVEAFVSSLKIKVQK-RNMYHALTEAHIRSG 471 (490)
Q Consensus 426 ~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 471 (490)
.|..++..|...++.+ .+...++........ ...+..++..+....
T Consensus 274 ~~~pll~~~~~~~~~ql~~L~alQ~~~~~~~~~~~~l~~~~~~LYd~d 321 (339)
T 1ug3_A 274 ARAKLLQKYLCDEQKELQALYALQALVVTLEQPPNLLRMFFDALYDED 321 (339)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhccChHHHHHHHHHHHhCcc
Confidence 4666777777433222 122223333322222 556666667776666
No 295
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=58.77 E-value=94 Score=27.24 Aligned_cols=167 Identities=10% Similarity=0.039 Sum_probs=96.1
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHH----HHHHHhcCCCCCcchHHHHHHHH
Q 011236 107 HAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSL----MQKMKEMGSFGSALNYNGIMCLY 182 (490)
Q Consensus 107 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~ 182 (490)
+..+..-|.+.+++++|++++-.- ...+.+.|+...|-++ ++.+.+.++++|......|+..+
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344455566777888887765322 2334455665554443 35556667777877777777777
Q ss_pred HhcCCcC-cHHHHHHHHHH----CC--CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 011236 183 TNTGQHE-KIPDVLLDMKE----NG--VPPDNFSYRICINSYGARSELSSMENVLQEMESQSHISMDWGTYSTVANYYII 255 (490)
Q Consensus 183 ~~~~~~~-~a~~~~~~m~~----~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (490)
.....-+ .-.++.+++++ .| ..-|......+...|.+.+++.+|+..| + .+-.++...|..++.-+..
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~--i---lg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL--V---LGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH--T---TSCTTHHHHHHHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH--H---hcCCchHHHHHHHHHHHHH
Confidence 6655422 12333444432 22 3456777788889999999999998887 2 2333444666555555444
Q ss_pred cCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011236 256 AGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKI 307 (490)
Q Consensus 256 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (490)
.+...+ .+...-.+++. |...++...|..+++....
T Consensus 180 ~~~~~e---------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 180 QDESHT---------------APLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp TSCGGG---------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred hcCCcc---------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 433111 23333333333 4456778888776665443
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.78 E-value=38 Score=24.80 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=60.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCC--HHHHHHHHHHHHhcccc-----hh
Q 011236 386 SWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRD--VEEVEAFVSSLKIKVQK-----RN 458 (490)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~-----~~ 458 (490)
....++.-|...|+.++|.+.++++.. ..+ ....+...+..++-+.++ .+...+++..+.+.+.- ..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~-----p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~ 82 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEV-----PHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 82 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-----GGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC-----Ccc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 467889999999999999999999754 111 112344455556666543 45677888888766543 34
Q ss_pred hhHHHHHHHHhcC---CcHHHHHHHHHh
Q 011236 459 MYHALTEAHIRSG---QEVDGLLESMKA 483 (490)
Q Consensus 459 ~~~~l~~~~~~~g---~~a~~~~~~m~~ 483 (490)
.|..++..+-... ..|.+++.++..
T Consensus 83 Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~ 110 (129)
T 2nsz_A 83 GYERIYNEIPDINLDVPHSYSVLERFVE 110 (129)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred HHHHHHhhChHhhcCccchHHHHHHHHH
Confidence 4555555555555 667777766654
No 297
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=57.01 E-value=23 Score=30.15 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=10.1
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 011236 249 VANYYIIAGLKEKAIIYLKK 268 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~ 268 (490)
.+...+..|+.+-+.-+++.
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHc
Confidence 34444555665555554444
No 298
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=55.06 E-value=15 Score=30.71 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=11.6
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCC
Q 011236 148 VREGLVDESLSLMQKMKEMGSFGS 171 (490)
Q Consensus 148 ~~~g~~~~a~~~~~~m~~~~~~p~ 171 (490)
++.|+.+....+++.+.+.|..++
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcc
Confidence 444555555555554444444444
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=53.74 E-value=41 Score=25.49 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=59.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCC--HHHHHHHHHHHHhcccc-----hh
Q 011236 386 SWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRD--VEEVEAFVSSLKIKVQK-----RN 458 (490)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~-----~~ 458 (490)
....++.-|...|+.++|.+.++++.. ..+ ....+...+..++-+.++ .+.+..++..+.+.+.. ..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~-----p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~ 84 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV-----PHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 84 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-----GGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC-----Ccc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 477889999999999999999999754 111 112344455556666433 45677788877766543 34
Q ss_pred hhHHHHHHHHhcC---CcHHHHHHHHHh
Q 011236 459 MYHALTEAHIRSG---QEVDGLLESMKA 483 (490)
Q Consensus 459 ~~~~l~~~~~~~g---~~a~~~~~~m~~ 483 (490)
.|..++..+-... ..|.+++.++..
T Consensus 85 Gf~~vl~~ldDl~lDiP~A~~~la~~v~ 112 (152)
T 2ion_A 85 GYERIYNEIPDINLDVPHSYSVLERFVE 112 (152)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred HHHHHHHhChHhccCccchHHHHHHHHH
Confidence 4555555555555 567777766654
No 300
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=50.14 E-value=57 Score=26.95 Aligned_cols=23 Identities=17% Similarity=-0.036 Sum_probs=14.0
Q ss_pred HHHHHhhcCHHHHHHHHHHcccc
Q 011236 111 LDLIGKVRGLESAETYFNSLNDE 133 (490)
Q Consensus 111 ~~~~~~~~~~~~A~~~~~~~~~~ 133 (490)
+...++.|+.+....+++.+...
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~ 31 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTH 31 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 34455667777766666654443
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.10 E-value=1.7e+02 Score=27.54 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhCCCC-CCCH--HHH-HHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 011236 208 FSYRICINSYGARSELSSMENVLQEMESQSHI-SMDW--GTY-STVANYYIIAGLKEKAIIYLKKCEDIVS 274 (490)
Q Consensus 208 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~--~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~ 274 (490)
..+|.+++.|...+.+++|..+..+.. -... .++. ..| -.+...+.-.+++.+|.+.|.......+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 346666666777777777777777664 1111 1111 111 1244555666777777777766655433
No 302
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=49.34 E-value=71 Score=23.81 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=32.1
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcC
Q 011236 57 LDQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRG 119 (490)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (490)
.+.+.+.|.+++..- ..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 10 ~~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 10 LETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 334445555544433 23344444445555666666666665544555555555555555543
No 303
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=47.35 E-value=56 Score=21.26 Aligned_cols=62 Identities=10% Similarity=0.080 Sum_probs=38.4
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCH
Q 011236 58 DQWVLEGQKISELELQRVIRQLRSRK-RFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGL 120 (490)
Q Consensus 58 ~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (490)
+.+...|..++..- ..++..+...+ ..-.+.++++.+.+.+...+..+....+..+...|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34555666665544 44556665554 4566777777777766556677777777777666543
No 304
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=47.29 E-value=1e+02 Score=24.33 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=7.7
Q ss_pred ChhhHHHHHHHHHhhcC
Q 011236 103 SVHDHAVQLDLIGKVRG 119 (490)
Q Consensus 103 ~~~~~~~l~~~~~~~~~ 119 (490)
++..-...+..+++.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 34444444444444444
No 305
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=47.19 E-value=55 Score=25.63 Aligned_cols=12 Identities=17% Similarity=-0.133 Sum_probs=4.9
Q ss_pred HcCCHHHHHHHH
Q 011236 255 IAGLKEKAIIYL 266 (490)
Q Consensus 255 ~~~~~~~a~~~~ 266 (490)
..|+.+....++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 344444444433
No 306
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=46.91 E-value=76 Score=22.68 Aligned_cols=12 Identities=25% Similarity=0.091 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 011236 330 LEEAEKMLEEWE 341 (490)
Q Consensus 330 ~~~a~~~~~~~~ 341 (490)
+..|..-+++..
T Consensus 4 ~~~al~~L~e~~ 15 (119)
T 1wty_A 4 LARAVERLKAAL 15 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 307
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=46.60 E-value=80 Score=25.69 Aligned_cols=51 Identities=4% Similarity=0.014 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhhhcCcCCCcch-hhHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 011236 400 MEKAFECMKEALAVHEENKFWRPKP-SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQ 455 (490)
Q Consensus 400 ~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 455 (490)
.+.+..+|..|.. .|+--.. ..|......+...|++++|..+|+.-.+.+.
T Consensus 130 ~~~p~~if~~L~~-----~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 130 IDEPVELFSFLAH-----HHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp CSCHHHHHHHHHH-----TTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHH-----CCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4777888888877 5555444 4566677777778888888888887766553
No 308
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=45.79 E-value=24 Score=26.39 Aligned_cols=17 Identities=0% Similarity=-0.017 Sum_probs=8.3
Q ss_pred HHHhhcCHHHHHHHHHH
Q 011236 113 LIGKVRGLESAETYFNS 129 (490)
Q Consensus 113 ~~~~~~~~~~A~~~~~~ 129 (490)
..+..|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 33444555555555544
No 309
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.50 E-value=96 Score=23.44 Aligned_cols=50 Identities=14% Similarity=0.022 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCCCCch-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011236 333 AEKMLEEWELSCYCYDFR-VPNIILLGYSQKGMIEKADAVLKEIVKKGKTP 382 (490)
Q Consensus 333 a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 382 (490)
..++|..|..+|+..... .|......+...|++.+|..+|+.-++.+..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455556565555543332 34444555555566666666666555555554
No 310
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=45.48 E-value=1.1e+02 Score=24.50 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=5.8
Q ss_pred HhhcCHHHHHHHHH
Q 011236 115 GKVRGLESAETYFN 128 (490)
Q Consensus 115 ~~~~~~~~A~~~~~ 128 (490)
+..|+.+-+..+++
T Consensus 45 ~~~g~~~~v~~Ll~ 58 (232)
T 2rfa_A 45 ALYDNLEAAMVLME 58 (232)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 33444444444443
No 311
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=44.89 E-value=73 Score=21.84 Aligned_cols=61 Identities=10% Similarity=0.006 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCcchhhHHHH
Q 011236 368 ADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRPKPSLVSSI 430 (490)
Q Consensus 368 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l 430 (490)
|..+.+++...|+.|+..+..-++..|...+- .+.++.++-..-.....|..|+..+.+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l--da~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ--NEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 45566666666777777666666666655443 12222222222111124566666555543
No 312
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=44.67 E-value=1.2e+02 Score=24.26 Aligned_cols=176 Identities=13% Similarity=0.018 Sum_probs=83.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCC---hhhHHHHHHHHH
Q 011236 249 VANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQL---NRDYITMLGSLV 325 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 325 (490)
.+...+..|+.+....+++.-...... .+...++.|.. .+..|+.+-+..+++ .+..++ ....+.+. ..+
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~-A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~-~A~ 81 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATR-TDQDSRTALHW-ACSAGHTEIVEFLLQ----LGVPVNDKDDAGWSPLH-IAA 81 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGC-CCTTSCCHHHH-HHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHH-HHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhc-CCCCCCCHHHH-HHHcCcHHHHHHHHH----hCCCCCCcCCCCCCHHH-HHH
Confidence 566778889999888888764332222 34444444443 455666655444443 333222 22233333 344
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhccCCHH
Q 011236 326 KIGELEEAEKMLEEWELSCYCYDFRV--PNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNS--WSIIAAGYADKNNME 401 (490)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~ 401 (490)
..|+.+ +++.+.+.|..++... -...+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+
T Consensus 82 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 153 (231)
T 3aji_A 82 SAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA----VMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153 (231)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred HcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 556665 4444555565554321 12234444556776544 34445555544321 112233334456655
Q ss_pred HHHHHHHHHHHhhhcCcCCCcchhh--HHHHHHHHHcCCCHHHHHHHHH
Q 011236 402 KAFECMKEALAVHEENKFWRPKPSL--VSSILDWLGDNRDVEEVEAFVS 448 (490)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~ 448 (490)
-+.. .++ .|..++... -...+......|+.+-+..+++
T Consensus 154 ~v~~----Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 154 MVHI----LLF-----YKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193 (231)
T ss_dssp HHHH----HHH-----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHH----HHh-----cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 4333 333 344443311 1122333445677665554444
No 313
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=44.25 E-value=1.2e+02 Score=24.44 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHH--------HHHHHHHhhcCHHHHHHHHHHccccCCC
Q 011236 85 FKHALQVSEWMSGQGLAFSVHDHA--------VQLDLIGKVRGLESAETYFNSLNDEDKV 136 (490)
Q Consensus 85 ~~~a~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 136 (490)
.+.|+.+++.+.+.-. .+...+. ..+..|.+.|.+++|.++|++.....++
T Consensus 88 LESAl~v~~~I~~e~~-l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s 146 (235)
T 3bu8_A 88 LESAINVLEMIKTEFT-LTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPT 146 (235)
T ss_dssp HHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGG
T ss_pred HHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCC
Confidence 3556667766665541 1111111 2234566667777777777666655443
No 314
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=43.28 E-value=66 Score=28.39 Aligned_cols=14 Identities=7% Similarity=0.010 Sum_probs=5.8
Q ss_pred HHcCCHHHHHHHHH
Q 011236 254 IIAGLKEKAIIYLK 267 (490)
Q Consensus 254 ~~~~~~~~a~~~~~ 267 (490)
+..|+.+-+..+++
T Consensus 181 ~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 181 MEFRNREALDLMMD 194 (364)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34444444433333
No 315
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=42.13 E-value=1.1e+02 Score=23.01 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=30.9
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcC
Q 011236 59 QWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRG 119 (490)
Q Consensus 59 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 119 (490)
.+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 344445553332 233444555555556666666666665544555555555555555554
No 316
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=42.08 E-value=93 Score=23.18 Aligned_cols=61 Identities=8% Similarity=0.105 Sum_probs=37.3
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCH
Q 011236 58 DQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGL 120 (490)
Q Consensus 58 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (490)
+.+.+.|.+++..- ..+++.+...+ .-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34445566655543 33445555555 567777787777776666666666666666666643
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.69 E-value=1.1e+02 Score=22.84 Aligned_cols=44 Identities=9% Similarity=0.040 Sum_probs=19.8
Q ss_pred HHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 011236 178 IMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARS 221 (490)
Q Consensus 178 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 221 (490)
++..+...+..-.|.++++.+.+.+...+..|.--.++.+...|
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33333344445555555555555444344444333444444333
No 318
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=41.61 E-value=73 Score=24.39 Aligned_cols=61 Identities=10% Similarity=0.057 Sum_probs=29.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhhcC
Q 011236 58 DQWVLEGQKISELELQRVIRQLRSRKRFKHALQVSEWMSGQ--GLAFSVHDHAVQLDLIGKVRG 119 (490)
Q Consensus 58 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 119 (490)
+.+.+.|.+++.. -..+++.+...+..-.|.++++.+.+. +...+..|.-..+..+...|-
T Consensus 22 ~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 22 KILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3334445554332 233444454544555555555555554 433444444444455544443
No 319
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=40.97 E-value=97 Score=25.44 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=4.4
Q ss_pred cCCHHHHHHHH
Q 011236 327 IGELEEAEKML 337 (490)
Q Consensus 327 ~~~~~~a~~~~ 337 (490)
.|+.+-+.-++
T Consensus 231 ~g~~~~v~~Ll 241 (256)
T 2etb_A 231 EGKIEIFRHIL 241 (256)
T ss_dssp TTCHHHHHHHH
T ss_pred hCCHHHHHHHH
Confidence 34444333333
No 320
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.94 E-value=85 Score=32.44 Aligned_cols=106 Identities=10% Similarity=0.032 Sum_probs=68.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCcCCCc------------
Q 011236 355 ILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKAFECMKEALAVHEENKFWRP------------ 422 (490)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p------------ 422 (490)
++..+...|..+-|.++. .. ++-++..--.+..+|...|++++|.++|+++-. |+.+
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~-~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~------gl~~~~~~~~~~~~~~ 884 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL------VLYSHTSQFAVLREFQ 884 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GG-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC------TTCSSCCSCGGGHHHH
T ss_pred HHHHHHHhcHHHHHHHHH----hh-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh------hcccCcccccchhhhh
Confidence 556666677776554433 21 222444334567778888999999999987643 2211
Q ss_pred -----------chhhHHHHHHHHHcCCCHHHHHHHHHHHHhccc----c--hhhhHHHHHHHHhcC
Q 011236 423 -----------KPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQ----K--RNMYHALTEAHIRSG 471 (490)
Q Consensus 423 -----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~--~~~~~~l~~~~~~~g 471 (490)
...-|..++..+.+.+-++-+.++-+.+.+.-. . ...|..+.++.+..|
T Consensus 885 ~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 885 EIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 112567788888888999988888887765321 1 557788888777655
No 321
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=40.77 E-value=1.8e+02 Score=25.12 Aligned_cols=58 Identities=9% Similarity=0.050 Sum_probs=27.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHccccC-CChh-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 011236 110 QLDLIGKVRGLESAETYFNSLNDED-KVDK-LYGALLNCYVREGLVDESLSLMQKMKEMGSFGSA 172 (490)
Q Consensus 110 l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 172 (490)
.+...++.|+++.+..+++.-...+ .+.. -++. +...+..|+.+ +++.+.+.|..|+.
T Consensus 28 ~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~Tp-Lh~A~~~g~~~----iv~~Ll~~ga~~~~ 87 (337)
T 4g8k_A 28 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSRED----IVELLLRHGADPVL 87 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCH-HHHHHHcCCHH----HHHHHHHcCCchhh
Confidence 3444556677776666665422211 1111 1222 33445667654 44445566655543
No 322
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.55 E-value=1.5e+02 Score=24.33 Aligned_cols=90 Identities=14% Similarity=0.016 Sum_probs=45.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 011236 249 VANYYIIAGLKEKAIIYLKKCEDIVSKSKD-----ALGYNHLISHYASLGNKDEMMKFWGLQKIKCKKQLNRDYITMLGS 323 (490)
Q Consensus 249 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (490)
-++.+....++++|.+++++.+......++ .......+..-.....-.-+..+.+.+ .. .+........+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 455677777777777777766543221011 111122222222222222233333333 22 3455556666677
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 011236 324 LVKIGELEEAEKMLEEWE 341 (490)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~ 341 (490)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777888888877776544
No 323
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=39.97 E-value=35 Score=20.85 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 011236 154 DESLSLMQKMKEMGSFGSALNYNGIMCLY 182 (490)
Q Consensus 154 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 182 (490)
++|.+.|.+|+...-.+...||...|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56666676666554444666777777666
No 324
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=39.25 E-value=1.3e+02 Score=23.02 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHH
Q 011236 208 FSYRICINSYGARSELSSMENVLQE 232 (490)
Q Consensus 208 ~~~~~li~~~~~~g~~~~a~~~~~~ 232 (490)
.+|.-++..+.+...+-.....|+.
T Consensus 157 i~~~Ef~~~~~~~~~~~~~l~~~d~ 181 (183)
T 1s6c_A 157 VTLDEFLESXQEDDNIMRSLQLFQN 181 (183)
T ss_dssp ECHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred EeHHHHHHHHhcChHHHHHHHHhhc
Confidence 3455555555554444455544443
No 325
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.55 E-value=1.2e+02 Score=22.67 Aligned_cols=43 Identities=9% Similarity=0.104 Sum_probs=18.9
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 011236 179 MCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARS 221 (490)
Q Consensus 179 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 221 (490)
+..+...+..-.|.++++.+.+.+...+..|.--.++.+...|
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333344445555555555554443334444333334443333
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=38.32 E-value=1.2e+02 Score=22.29 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=14.5
Q ss_pred CcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 011236 187 QHEKIPDVLLDMKENGVPPDNFSYRICINSYGA 219 (490)
Q Consensus 187 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 219 (490)
..-.|.++++.+.+.+...+..|.---++.+..
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEA 65 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 444555555555544433344433333333333
No 327
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=38.23 E-value=75 Score=25.89 Aligned_cols=43 Identities=9% Similarity=0.218 Sum_probs=18.5
Q ss_pred ccHHHhhccCCCCCCChHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011236 37 NNLYSRISPLGDPDVSLTPVLDQWVLEGQKISELELQRVIRQL 79 (490)
Q Consensus 37 ~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 79 (490)
..|...|.+.|-+.+.+..+++.+.+.|..-|..-....+...
T Consensus 79 ~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~ 121 (221)
T 3d5l_A 79 SDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTM 121 (221)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3344444444444444444444444444443333333444333
No 328
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=37.52 E-value=92 Score=25.10 Aligned_cols=22 Identities=18% Similarity=0.012 Sum_probs=12.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 011236 356 LLGYSQKGMIEKADAVLKEIVK 377 (490)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~m~~ 377 (490)
+......|+...+.++.+.+.+
T Consensus 214 l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 214 LQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3334455666666666666554
No 329
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=37.44 E-value=1.1e+02 Score=22.72 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC
Q 011236 225 SMENVLQEMESQSHISMDWGTYSTVANYYIIAG 257 (490)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 257 (490)
.|.++++.+. +.+...+..|..--++.+...|
T Consensus 35 ta~ei~~~l~-~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 35 TPDDILGEVR-KTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp CHHHHHHHHH-TTCTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-hhCCCCCHhHHHHHHHHHHHCC
Confidence 4444444444 3333333333333334444444
No 330
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=37.28 E-value=1.5e+02 Score=23.32 Aligned_cols=51 Identities=10% Similarity=-0.098 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCH
Q 011236 66 KISELELQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGL 120 (490)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (490)
.++...-...+..+.+.+.. .+...+..+... +++..-...+..++..++.
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~ 80 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDE 80 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCG
T ss_pred CCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCH
Confidence 34555555555555555542 233333333332 2444445555555555543
No 331
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=37.04 E-value=1.3e+02 Score=22.56 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC
Q 011236 223 LSSMENVLQEMESQSHISMDWGTYSTVANYYIIAG 257 (490)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 257 (490)
.-.|.++++.+. +.+...+..|..--+..+...|
T Consensus 33 h~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLI-DLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444 2232333333333334444444
No 332
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.85 E-value=1.4e+02 Score=22.82 Aligned_cols=53 Identities=6% Similarity=-0.046 Sum_probs=34.8
Q ss_pred HcCCHHHHHHHHHHHhhhhccCC--ChhhHHHHHH-H-----HHhcCChhHHHHHHHHHHHh
Q 011236 255 IAGLKEKAIIYLKKCEDIVSKSK--DALGYNHLIS-H-----YASLGNKDEMMKFWGLQKIK 308 (490)
Q Consensus 255 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~~ 308 (490)
..|++=+|-++++........ + ....|..||+ . ..+.|+...|..++.+....
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~-~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGR-GNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCS-SSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 347888888888887765544 4 4455666666 2 23467777777777766553
No 333
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=36.24 E-value=83 Score=26.23 Aligned_cols=18 Identities=6% Similarity=0.183 Sum_probs=9.0
Q ss_pred hcCCcCcHHHHHHHHHHC
Q 011236 184 NTGQHEKIPDVLLDMKEN 201 (490)
Q Consensus 184 ~~~~~~~a~~~~~~m~~~ 201 (490)
+.|+.+.+..+++...+.
T Consensus 22 ~~g~~~~v~~Ll~~~~~~ 39 (273)
T 2pnn_A 22 AQSNCQELESLLPFLQRS 39 (273)
T ss_dssp HTTCSSTTTTHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHhhc
Confidence 445555555555544443
No 334
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=36.01 E-value=2.1e+02 Score=26.41 Aligned_cols=63 Identities=8% Similarity=0.062 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch--------hHH-HHHHHHHhcCCHHHHHHHHHHHHHc
Q 011236 316 DYITMLGSLVKIGELEEAEKMLEEWELSCYCYDFR--------VPN-IILLGYSQKGMIEKADAVLKEIVKK 378 (490)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~-~l~~~~~~~g~~~~A~~~~~~m~~~ 378 (490)
..+.+.+.|.+.++...+..+++.+...+..|+.. +|. -+...++..+++.+|.+.|......
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 45778899999999999999999988876644333 222 2445567788999998888777654
No 335
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=35.79 E-value=1.5e+02 Score=22.68 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=11.0
Q ss_pred HHHhhccCCCCCCChHHHHHHHHHcCCC
Q 011236 39 LYSRISPLGDPDVSLTPVLDQWVLEGQK 66 (490)
Q Consensus 39 l~~~l~~~~~~~~a~~~~~~~~~~~~~~ 66 (490)
|...|.+.|-..+.+..+++.+.+.|..
T Consensus 37 L~~KL~~kg~~~e~Ie~vl~~l~~~g~l 64 (162)
T 3dfg_A 37 LNRKLQARGIEPEAAQAAVERLAGEGWQ 64 (162)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCC
Confidence 3333333333333344444444444433
No 336
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.51 E-value=1.3e+02 Score=22.02 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=36.2
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCH
Q 011236 60 WVLEGQKISELELQRVIRQLRSRK-RFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGL 120 (490)
Q Consensus 60 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (490)
+.+.|.+++..- ..++..+...+ ..-.|.++++.+.+.+...+..+.-..+..+...|-+
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 445566655443 33455555555 5667777777777776556666666666666666544
No 337
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.18 E-value=2.5e+02 Score=25.25 Aligned_cols=21 Identities=29% Similarity=0.484 Sum_probs=12.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 011236 320 MLGSLVKIGELEEAEKMLEEW 340 (490)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~ 340 (490)
++.++....+.+++.++++++
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~ 102 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDL 102 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHH
Confidence 344445556666666666655
No 338
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=34.99 E-value=1.1e+02 Score=22.84 Aligned_cols=20 Identities=10% Similarity=-0.152 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHcCCCHHHH
Q 011236 424 PSLVSSILDWLGDNRDVEEV 443 (490)
Q Consensus 424 ~~~~~~l~~~~~~~g~~~~a 443 (490)
+.++..+++...+.|-.+..
T Consensus 77 ~~s~rd~~r~a~~~GlI~d~ 96 (146)
T 1jog_A 77 AYGFKDILREALRFGLIGDM 96 (146)
T ss_dssp SCCHHHHHHHHHHTTSCSCH
T ss_pred CCCHHHHHHHHHHcCCCCcH
Confidence 34455555555555554444
No 339
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=34.43 E-value=1e+02 Score=23.32 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcccc---hhhhHHHHHHHHhcC--CcHHHHHHHHHhCCC
Q 011236 440 VEEVEAFVSSLKIKVQK---RNMYHALTEAHIRSG--QEVDGLLESMKADDI 486 (490)
Q Consensus 440 ~~~a~~~~~~~~~~~~~---~~~~~~l~~~~~~~g--~~a~~~~~~m~~~~~ 486 (490)
+++|.+.+..|++.... +..||..+..+...- .+-.++|..+.+.++
T Consensus 74 y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l~~FW~~Iv~~~l 125 (152)
T 1rw2_A 74 FMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGI 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHCCc
Confidence 44444444444443332 445555554444322 222444444444443
No 340
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.27 E-value=1.2e+02 Score=22.67 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=37.3
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCH
Q 011236 58 DQWVLEGQKISELELQRVIRQLRSRK-RFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGL 120 (490)
Q Consensus 58 ~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (490)
+.+...|.+++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 345556666554433 3444554554 5666777777777766556666666666666666644
No 341
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.95 E-value=2.3e+02 Score=24.45 Aligned_cols=25 Identities=12% Similarity=0.310 Sum_probs=16.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHH
Q 011236 210 YRICINSYGARSELSSMENVLQEME 234 (490)
Q Consensus 210 ~~~li~~~~~~g~~~~a~~~~~~~~ 234 (490)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3456666777777777777776664
No 342
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=33.70 E-value=2.1e+02 Score=23.84 Aligned_cols=227 Identities=12% Similarity=0.039 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccCCChhhHHHHHHHHHhcCChhHHHHHHHHHH--HhcCCCChhhHH
Q 011236 241 MDWGTYSTVANYYIIAGLKEKAIIYLKKCEDIVSKSKDALGYNHLISHYASLGNKDEMMKFWGLQK--IKCKKQLNRDYI 318 (490)
Q Consensus 241 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~ 318 (490)
++...-...+.++...|..+....+...+.. ++...-...+.++...|....+..-+-... .....++...-.
T Consensus 35 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d-----~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~ 109 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQDAVRLAIEFCSD-----KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRA 109 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHH
T ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHcC-----CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHH
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 011236 319 TMLGSLVKIG--ELEEAEKMLEEWELSCYCYDFRVPNIILLGYSQKGMIEKADAVLKEIVKKGKTPTPNSWSIIAAGYAD 396 (490)
Q Consensus 319 ~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 396 (490)
..+.++...+ +......+...+...--.++..+-...+.++...|+ ..+...+..+... ++...-...+.++..
T Consensus 110 ~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~a~~aL~~ 185 (280)
T 1oyz_A 110 TAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-KATIPLLINLLKD---PNGDVRNWAAFAINI 185 (280)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----CCHHHHHHHHTC---SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHcC---CCHHHHHHHHHHHHh
Q ss_pred cC--CHHHHHHHHHHHHHhhhcCcCCCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHhcC-Cc
Q 011236 397 KN--NMEKAFECMKEALAVHEENKFWRPKPSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQKRNMYHALTEAHIRSG-QE 473 (490)
Q Consensus 397 ~~--~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~ 473 (490)
.+ ..+-...+.+.+.. ++..+-...+.++.+.|+.+....+...+.+.. +-...+.++.+.| ..
T Consensus 186 ~~~~~~~~~~~L~~~l~d---------~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~----vr~~a~~aL~~i~~~~ 252 (280)
T 1oyz_A 186 NKYDNSDIRDCFVEMLQD---------KNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT----VYDDIIEAAGELGDKT 252 (280)
T ss_dssp HTCCCHHHHHHHHHHTTC---------SCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS----CCHHHHHHHHHHCCGG
T ss_pred hccCcHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc----HHHHHHHHHHhcCchh
Q ss_pred HHHHHHHHHhCCCCCC
Q 011236 474 VDGLLESMKADDIDED 489 (490)
Q Consensus 474 a~~~~~~m~~~~~~pd 489 (490)
+...+.++....-.++
T Consensus 253 ~~~~L~~~l~~~~~~~ 268 (280)
T 1oyz_A 253 LLPVLDTMLYKFDDNE 268 (280)
T ss_dssp GHHHHHHHHTTSSCCH
T ss_pred hhHHHHHHHhcCCCcH
No 343
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.33 E-value=2.5e+02 Score=28.99 Aligned_cols=48 Identities=15% Similarity=0.018 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----hhHHHHHHHHHhcC
Q 011236 316 DYITMLGSLVKIGELEEAEKMLEEWELSCYCYDF----RVPNIILLGYSQKG 363 (490)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 363 (490)
-|..++..+.+.+.++.+.++-+..++.--.-|. ..|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5788899999999999999999888865222222 25777777776654
No 344
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.46 E-value=1.7e+02 Score=22.45 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCCCch-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011236 333 AEKMLEEWELSCYCYDFR-VPNIILLGYSQKGMIEKADAVLKEIVKKGKTP 382 (490)
Q Consensus 333 a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 382 (490)
...+|..|..+|+..... .|......+-..|++.+|..+|+.-++.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 445566666655544332 34444555555666666666666666655554
No 345
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=32.32 E-value=1.8e+02 Score=24.13 Aligned_cols=53 Identities=15% Similarity=0.024 Sum_probs=25.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCC-------CcchHHHHHHHHH--hcCCcCcHHHHHHH
Q 011236 145 NCYVREGLVDESLSLMQKMKEMGSFG-------SALNYNGIMCLYT--NTGQHEKIPDVLLD 197 (490)
Q Consensus 145 ~~~~~~g~~~~a~~~~~~m~~~~~~p-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~ 197 (490)
...++.|+.+.+..+++...+.+... +..-++.|..++. +.|+.+-+..+++.
T Consensus 18 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 18 FDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 33455677666666666655554322 2233344444443 23555444444444
No 346
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=31.49 E-value=1.4e+02 Score=24.04 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=6.8
Q ss_pred hcCCHHHHHHHHHHHH
Q 011236 326 KIGELEEAEKMLEEWE 341 (490)
Q Consensus 326 ~~~~~~~a~~~~~~~~ 341 (490)
..|+...+.++.+.+.
T Consensus 219 ~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 219 LNSQVWSALQMSKALQ 234 (237)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344444444444443
No 347
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=31.19 E-value=32 Score=22.11 Aligned_cols=27 Identities=11% Similarity=0.319 Sum_probs=22.8
Q ss_pred hHHHHHHHHhcC-CcHHHHHHHHHhCCC
Q 011236 460 YHALTEAHIRSG-QEVDGLLESMKADDI 486 (490)
Q Consensus 460 ~~~l~~~~~~~g-~~a~~~~~~m~~~~~ 486 (490)
=.++++--.+.| .+|..++++|.+.|+
T Consensus 26 S~S~lQR~lrIGYnRAArlid~lE~~Gi 53 (73)
T 2ve8_A 26 SISAVQRKLKIGYNRAARMIEAMEMAGV 53 (73)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHccChHHHHHHHHHHHHCCc
Confidence 467778888888 889999999999886
No 348
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=31.09 E-value=84 Score=22.87 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=29.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCH
Q 011236 74 RVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGL 120 (490)
Q Consensus 74 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (490)
.+++.+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34555555556667777777777766555666666666666665543
No 349
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.07 E-value=1.8e+02 Score=22.26 Aligned_cols=56 Identities=5% Similarity=-0.016 Sum_probs=40.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HhccCCHHHHHHHHHHHHHhh
Q 011236 359 YSQKGMIEKADAVLKEIVKKGKTP--TPNSWSIIAA-G-----YADKNNMEKAFECMKEALAVH 414 (490)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~~~ 414 (490)
+...|++=+|-++|+..-.....| +...|..||+ . ..+.|+...|..++.++....
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L 105 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYF 105 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 344588888888888887665455 4556777776 2 235789999999999987733
No 350
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.06 E-value=1.5e+02 Score=23.59 Aligned_cols=14 Identities=21% Similarity=0.074 Sum_probs=5.8
Q ss_pred HHHcCCHHHHHHHH
Q 011236 253 YIIAGLKEKAIIYL 266 (490)
Q Consensus 253 ~~~~~~~~~a~~~~ 266 (490)
.+..|+.+-+..++
T Consensus 146 A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 146 AAAKGNLKMVHILL 159 (231)
T ss_dssp HHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 33444444433333
No 351
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.50 E-value=1.8e+02 Score=22.14 Aligned_cols=47 Identities=9% Similarity=-0.142 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhcC
Q 011236 282 YNHLISHYASLGNKDEMMKFWGLQKIK--CKKQLNRDYITMLGSLVKIG 328 (490)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 328 (490)
-..++..+...++.-.|.++++.+... ++..+..|.---+..+...|
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 444555555555566666666666555 44444444444444444444
No 352
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=30.08 E-value=2.3e+02 Score=23.29 Aligned_cols=150 Identities=12% Similarity=0.076 Sum_probs=84.3
Q ss_pred CCCCCChHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhhcCHHH
Q 011236 47 GDPDVSLTPVLDQWVLE--GQKISELELQRVIRQLRSRKR-FKHALQVSEWMSGQGL-AFSVHDHAVQLDLIGKVRGLES 122 (490)
Q Consensus 47 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 122 (490)
+-..+.+..+++.+... ....+...+..++..+...+. ...+..+|..+-..+- ..+...+..++..+......+.
T Consensus 87 ~~s~~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~ 166 (256)
T 2jul_A 87 KFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEK 166 (256)
T ss_dssp TSCHHHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHH
Confidence 34455666666666553 345667777777766543322 3456667776655432 3555566666655544444556
Q ss_pred HHHHHHHccccC---CChhHHHHHHHHHH-hcC-----------ChhHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 011236 123 AETYFNSLNDED---KVDKLYGALLNCYV-REG-----------LVDESLSLMQKMKEMGSFGSALNYNGIMCLYTNTGQ 187 (490)
Q Consensus 123 A~~~~~~~~~~~---p~~~~~~~li~~~~-~~g-----------~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 187 (490)
...+|+.+-..+ .+..-+..++..+. ..| ..+.+..+|+.+-..| ....+|.-++..+.+...
T Consensus 167 l~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~ 244 (256)
T 2jul_A 167 LKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDEN 244 (256)
T ss_dssp HHHHHHHTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSS
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHH
Confidence 777787765443 23333333333332 124 2244555565553322 135688999998888777
Q ss_pred cCcHHHHHHHH
Q 011236 188 HEKIPDVLLDM 198 (490)
Q Consensus 188 ~~~a~~~~~~m 198 (490)
.-+++..|+.+
T Consensus 245 l~~~l~~~d~~ 255 (256)
T 2jul_A 245 IMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhccc
Confidence 77777777654
No 353
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=29.56 E-value=41 Score=26.61 Aligned_cols=69 Identities=9% Similarity=0.066 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHH----HHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCCh
Q 011236 85 FKHALQVSEWMSGQGLAFSVHDHAVQ----LDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLV 153 (490)
Q Consensus 85 ~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 153 (490)
.+.|+.+++.+.+.-..+.......+ +..|.+.|.+++|.++|++.-..+++..-....+....+.++.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~ 166 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDT 166 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCC
No 354
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.71 E-value=1.2e+02 Score=21.83 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=7.5
Q ss_pred hhcCHHHHHHHHHHcc
Q 011236 116 KVRGLESAETYFNSLN 131 (490)
Q Consensus 116 ~~~~~~~A~~~~~~~~ 131 (490)
..++++.|..+...+.
T Consensus 73 ~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 73 LHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444555544444443
No 355
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.56 E-value=89 Score=23.09 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCH
Q 011236 73 QRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGL 120 (490)
Q Consensus 73 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (490)
..+++.+...+..-.|.++++.+.+.+...+..+.-..+..+...|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345555655556667777777777766556666666666666666543
No 356
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=28.35 E-value=1.8e+02 Score=21.56 Aligned_cols=16 Identities=6% Similarity=-0.012 Sum_probs=7.5
Q ss_pred HHhhcCHHHHHHHHHH
Q 011236 114 IGKVRGLESAETYFNS 129 (490)
Q Consensus 114 ~~~~~~~~~A~~~~~~ 129 (490)
.+..|+.+....+++.
T Consensus 10 A~~~g~~~~v~~ll~~ 25 (167)
T 3v31_A 10 LAAQGEMLYLATRIEQ 25 (167)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHc
Confidence 3344555554444443
No 357
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=28.09 E-value=1.8e+02 Score=31.10 Aligned_cols=83 Identities=12% Similarity=0.139 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhhhcCcCCCcc-hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHhcC-CcHHHH
Q 011236 400 MEKAFECMKEALAVHEENKFWRPK-PSLVSSILDWLGDNRDVEEVEAFVSSLKIKVQKRNMYHALTEAHIRSG-QEVDGL 477 (490)
Q Consensus 400 ~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~a~~~ 477 (490)
.+...+.|.+..+ -+.++ .......+....+.|++-.|.+++.++.+..+....|..++..+...| +.-..+
T Consensus 1265 ~~~~~~~~~el~k------~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~~~~~~~~~~~~~~~l~w~h~~~~ 1338 (1354)
T 3lxu_X 1265 LAEINELYTEIIK------FVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKRTRDHFVELAAINGALGHEHIRTV 1338 (1354)
T ss_dssp HHHHHHHHHHHTT------SSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHh------hcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 4445566666655 23333 333334444445678999999999999988877778889999999999 777777
Q ss_pred HHHHHhCCCCC
Q 011236 478 LESMKADDIDE 488 (490)
Q Consensus 478 ~~~m~~~~~~p 488 (490)
.+++.-..+++
T Consensus 1339 ~~~~~~~~~p~ 1349 (1354)
T 3lxu_X 1339 INRMMITAFPS 1349 (1354)
T ss_dssp HHHHHHHHSCS
T ss_pred HHhhhhhhCcc
Confidence 77776554443
No 358
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=27.82 E-value=1.4e+02 Score=22.93 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011236 352 PNIILLGYSQKGMIEKADAVLKEIV 376 (490)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~m~ 376 (490)
...++.-|...|+.++|...++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567888888888888888888765
No 359
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.19 E-value=1.5e+02 Score=21.46 Aligned_cols=17 Identities=6% Similarity=0.286 Sum_probs=7.3
Q ss_pred CCcCcHHHHHHHHHHCC
Q 011236 186 GQHEKIPDVLLDMKENG 202 (490)
Q Consensus 186 ~~~~~a~~~~~~m~~~~ 202 (490)
+..-.|.++++.+.+.+
T Consensus 24 ~~~~sa~ei~~~l~~~~ 40 (131)
T 2o03_A 24 DDFRSAQELHDELRRRG 40 (131)
T ss_dssp CSCEEHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 33444444444444443
No 360
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.16 E-value=2.5e+02 Score=22.78 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=31.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCc-------chHHHHHHHHHhc---CCcCcHHHHHHHHHH
Q 011236 144 LNCYVREGLVDESLSLMQKMKEMGSFGSA-------LNYNGIMCLYTNT---GQHEKIPDVLLDMKE 200 (490)
Q Consensus 144 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~---~~~~~a~~~~~~m~~ 200 (490)
+...++.|+.+....+++.+.+.|..++. .-++.|..+ +.. |+.+-+..+++.-..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCc
Confidence 44456677777776777766666655443 223334333 333 666666666655443
No 361
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=27.16 E-value=1.5e+02 Score=20.10 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=16.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011236 386 SWSIIAAGYADKNNMEKAFECMKEALA 412 (490)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (490)
.+......+.+.|++++|++..+++..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344555666777777777666665543
No 362
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1
Probab=26.93 E-value=2.1e+02 Score=21.80 Aligned_cols=44 Identities=7% Similarity=0.273 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC
Q 011236 427 VSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG 471 (490)
Q Consensus 427 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 471 (490)
|..++..+...||+..+. +++.+...... ...+..++.-+.+.|
T Consensus 101 ~~~l~~~a~~~~D~~~~~-~l~~~l~Eq~e~~~~l~~~l~~l~~~g 145 (167)
T 1krq_A 101 INTLVEHMLTHKDYSTFN-FLQWYVSEQHEEEALFRGIVDKIKLIG 145 (167)
T ss_dssp HHHHHHHHHHTTCHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444555554445444332 22223332222 334444444444444
No 363
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=26.41 E-value=2.7e+02 Score=22.86 Aligned_cols=128 Identities=7% Similarity=0.086 Sum_probs=65.5
Q ss_pred CChhhHHHHHHHHHhhc-CHHHHHHHHHHccccCC---ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchHHH
Q 011236 102 FSVHDHAVQLDLIGKVR-GLESAETYFNSLNDEDK---VDKLYGALLNCYVREGLVDESLSLMQKMKEMGSFGSALNYNG 177 (490)
Q Consensus 102 ~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 177 (490)
.+...+..++..+...+ ....+..+|..+-..+. +..-+..++..+......++...+|+.+-..| -...++.-
T Consensus 109 I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~--dG~I~~~E 186 (256)
T 2jul_A 109 VDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINK--DGCITKEE 186 (256)
T ss_dssp EEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSS--SSCBCHHH
T ss_pred CCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCC--CCcCcHHH
Confidence 45555555555443222 33467778887765542 33334444443333333445555665443221 12344554
Q ss_pred HHHHHHhc----CC-----------cCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 011236 178 IMCLYTNT----GQ-----------HEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEM 233 (490)
Q Consensus 178 l~~~~~~~----~~-----------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 233 (490)
+...+... |. .+.+..+|..+-..| -...++.-++..+.+...+-++...|+.+
T Consensus 187 f~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 187 MLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 44444332 31 123444444442221 12357788888888888888888888765
No 364
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=26.30 E-value=2.2e+02 Score=27.03 Aligned_cols=86 Identities=13% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccC-CChhHHHHHHHHHH
Q 011236 72 LQRVIRQLR--SRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED-KVDKLYGALLNCYV 148 (490)
Q Consensus 72 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~li~~~~ 148 (490)
|..-|..+. ...+.....+..+.++.+-.--+......++..|++.|-.+.|.++++.+-.+- .+...| .-+..|+
T Consensus 482 W~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~ 560 (570)
T 3f3f_C 482 WPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFS 560 (570)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-----------------
T ss_pred hhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHH
Q ss_pred hcCChhHHHH
Q 011236 149 REGLVDESLS 158 (490)
Q Consensus 149 ~~g~~~~a~~ 158 (490)
++|+++....
T Consensus 561 rA~~~~~Vk~ 570 (570)
T 3f3f_C 561 RAGKYELVKS 570 (570)
T ss_dssp ----------
T ss_pred HcCChhhccC
No 365
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.21 E-value=2.1e+02 Score=21.54 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 011236 353 NIILLGYSQKGMIEKADAVLKEIV 376 (490)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~m~ 376 (490)
+.++.-|...|+.++|...++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445666666666666666666653
No 366
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=26.19 E-value=81 Score=22.69 Aligned_cols=49 Identities=10% Similarity=0.144 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHhcccc---hhhhHHHHHHHHhcC--CcHHHHHHHHHhCCCC
Q 011236 439 DVEEVEAFVSSLKIKVQK---RNMYHALTEAHIRSG--QEVDGLLESMKADDID 487 (490)
Q Consensus 439 ~~~~a~~~~~~~~~~~~~---~~~~~~l~~~~~~~g--~~a~~~~~~m~~~~~~ 487 (490)
.+++|.+.+..|++.... +..||..+..+...- .+-.+++..+.+.++.
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l~~FW~~iv~~~lg 95 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGIT 95 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHCCcC
Confidence 445555555555554332 555666655554322 2224455555555544
No 367
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=25.96 E-value=3.7e+02 Score=24.90 Aligned_cols=134 Identities=8% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 011236 91 VSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDED-KVDKLYGALLNCYVREGLVDESLSLMQKMKEMGSF 169 (490)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 169 (490)
.++...+.|.+--.+.|..-.+.+...|++++|..+--..+..- .+..+.+.+-..=..-|+..--+.+|.-+.+.|--
T Consensus 348 A~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~L 427 (494)
T 1bpo_A 348 ALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQL 427 (494)
T ss_dssp HHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSCC
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCcc
Q ss_pred CCcchHHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 011236 170 GSALNYNGIMCLYTNTGQHEKIPDVLLDMKENGVPPDNFSYRICINSYGARSELSSMENVLQEM 233 (490)
Q Consensus 170 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 233 (490)
+..---.+++.-...|+.+-..+.+.+ |.-+++-=+.=..+..+..-|..+|.+.
T Consensus 428 -n~~ESlEl~r~vL~q~r~~llekWl~e--------~KL~~SEeLGDlvk~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 428 -NKYESLELCRPVLQQGRKQLLEKWLKE--------DKLECSEELGDLVKSVDPTLALSVYLRA 482 (494)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHH--------TCSCCCHHHHHHHHHHCSHHHHHHHHHH
T ss_pred -chHHhhHHhHHHHhccHHHHHHHHHhc--------CCccccHHhHhhhhhcCHHHHHHHHHHc
No 368
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.69 E-value=1.4e+02 Score=19.26 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=25.3
Q ss_pred HHhcCCCCCcchHHHHHHHHHhcC-CcCcHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 011236 163 MKEMGSFGSALNYNGIMCLYTNTG-QHEKIPDVLLDMKENGVPPDNFSYRICINSYGARS 221 (490)
Q Consensus 163 m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 221 (490)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|..-.+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444433322 23333443333 34455555555555444344444444444444433
No 369
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.33 E-value=1.4e+02 Score=22.04 Aligned_cols=14 Identities=7% Similarity=0.055 Sum_probs=5.7
Q ss_pred cCcHHHHHHHHHHC
Q 011236 188 HEKIPDVLLDMKEN 201 (490)
Q Consensus 188 ~~~a~~~~~~m~~~ 201 (490)
.-.|.++++.+.+.
T Consensus 29 h~sa~eI~~~l~~~ 42 (139)
T 3mwm_A 29 FRSAQELHDMLKHK 42 (139)
T ss_dssp CEEHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh
Confidence 33444444444433
No 370
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=25.09 E-value=3.2e+02 Score=23.32 Aligned_cols=118 Identities=9% Similarity=0.068 Sum_probs=52.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhhcCHHHHHHHHHHccccC-CChhHHHHHHHHHHhcCC
Q 011236 76 IRQLRSRKRFKHALQVSEWMSGQGLAFSV--HDHAVQLDLIGKVRGLESAETYFNSLNDED-KVDKLYGALLNCYVREGL 152 (490)
Q Consensus 76 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~li~~~~~~g~ 152 (490)
+...++.|+.+....++.. .+..++. ..-...+...+..|+.+-+..+++.-.... ++..-++ .+...+..|+
T Consensus 28 L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g~ 103 (351)
T 3utm_A 28 LLEAARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLV-PLHNACSYGH 103 (351)
T ss_dssp HHHHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCc-HHHHHHHCCC
Confidence 3334466777666665542 2221111 111223455566777776666665422211 1221122 2334455666
Q ss_pred hhHHHHHHHHHHhcCCCCCcch---HHHHHHHHHhcCCcCcHHHHHHHHHHCCCCCC
Q 011236 153 VDESLSLMQKMKEMGSFGSALN---YNGIMCLYTNTGQHEKIPDVLLDMKENGVPPD 206 (490)
Q Consensus 153 ~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 206 (490)
.+ +++.+.+.|..++... ++.|. ..+..|+. ++++.+.+.|..|+
T Consensus 104 ~~----iv~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~----~~v~~Ll~~g~~~~ 151 (351)
T 3utm_A 104 YE----VTELLLKHGACVNAMDLWQFTPLH-EAASKNRV----EVCSLLLSHGADPT 151 (351)
T ss_dssp HH----HHHHHHHTTCCTTCCCTTCCCHHH-HHHHTTCH----HHHHHHHHTTCCTT
T ss_pred HH----HHHHHHHCCCCCCCCCCCCCCHHH-HHHHcCCH----HHHHHHHHcCCCCc
Confidence 54 4444445555444332 22333 33344553 34444455555443
No 371
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.08 E-value=3.4e+02 Score=23.58 Aligned_cols=17 Identities=6% Similarity=-0.138 Sum_probs=10.9
Q ss_pred HHHcCCCHHHHHHHHHH
Q 011236 433 WLGDNRDVEEVEAFVSS 449 (490)
Q Consensus 433 ~~~~~g~~~~a~~~~~~ 449 (490)
.....|+.+-+..+++.
T Consensus 250 ~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 250 LSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHTCCHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHc
Confidence 33455777777777665
No 372
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=25.05 E-value=1.3e+02 Score=18.79 Aligned_cols=44 Identities=9% Similarity=0.163 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011236 72 LQRVIRQLRSRKRFKHALQVSEWMSGQGLAFSVHDHAVQLDLIGK 116 (490)
Q Consensus 72 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 116 (490)
++.+++.+++..-.+.++..+.+..+.| ..+.+.|..-.+.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4445555555555666666666666665 3555555555544444
No 373
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=24.47 E-value=4.4e+02 Score=24.84 Aligned_cols=69 Identities=10% Similarity=0.087 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhcCHHHHHHHHHHccccCCChhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011236 86 KHALQVSEWMSGQGLAFSVHDHAVQLDLIGKVRGLESAETYFNSLNDEDKVDKLYGALLNCYVREGLVDESLSLMQKMKE 165 (490)
Q Consensus 86 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 165 (490)
-+|.+.++.....+. .++. .+...+.+|+.+|++....- +.........-|...+-++.|+++.-..-+
T Consensus 27 ~KA~E~L~~Ak~~~~-~d~~---------~~~~~L~eAl~Lf~~va~~l-~l~~L~~~c~~~~~l~~y~GaVeL~L~~A~ 95 (525)
T 3i5p_A 27 FRAIEHLRRAKEIGL-RNYD---------SLNYHLKNATALLEQIVDDL-SIEKLKEAVSMMLSVNYYPKSIEFLLNIAN 95 (525)
T ss_dssp HHHHHHHHHHHHC-----CH---------HHHHHHHHHHC-----------CHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCHH---------HHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 346666666666542 0111 12334566777776654321 222233446777777777777776655443
No 374
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.46 E-value=2.7e+02 Score=22.11 Aligned_cols=27 Identities=7% Similarity=-0.138 Sum_probs=16.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011236 355 ILLGYSQKGMIEKADAVLKEIVKKGKT 381 (490)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~m~~~~~~ 381 (490)
-+...+..|+.+-+..+++.+.+.|..
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 344455666776666666666666543
No 375
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.43 E-value=1.4e+02 Score=20.41 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 011236 364 MIEKADAVLKEIVKKGKTPTPNSWSIIAAGYADKNNMEKA 403 (490)
Q Consensus 364 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 403 (490)
+.+.|.++++.+..+|.. .|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~----Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQ----ALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTT----HHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChH----HHHHHHHHHHHcCcHHHH
Confidence 566666777666665432 566666666655554443
No 376
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=22.97 E-value=2.6e+02 Score=21.55 Aligned_cols=96 Identities=7% Similarity=-0.074 Sum_probs=41.4
Q ss_pred HHHhcCChhHHHHHHHHHHHhcCCCChh---hHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCchhH--H-HHHHHHH
Q 011236 288 HYASLGNKDEMMKFWGLQKIKCKKQLNR---DYITMLGSLVK-IGELEEAEKMLEEWELSCYCYDFRVP--N-IILLGYS 360 (490)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~--~-~l~~~~~ 360 (490)
..+..|+.+.-.++.+.++..+..++.. -.+.|..++.. ..+.....++.+.+.+.|..++.... . ..+...+
T Consensus 44 ~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~ 123 (186)
T 3t8k_A 44 DVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIF 123 (186)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGG
T ss_pred HHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHH
Confidence 3344555544445555555555433322 22333332222 22344445566666666665554321 1 1222222
Q ss_pred hcCCH-HHHHHHHHHHHH-cCCCCC
Q 011236 361 QKGMI-EKADAVLKEIVK-KGKTPT 383 (490)
Q Consensus 361 ~~g~~-~~A~~~~~~m~~-~~~~p~ 383 (490)
..+.. ..-..+++.+.+ .|..++
T Consensus 124 ~~~~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 124 NYFVDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp GCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred HcCCChhhHHHHHHHHHHhcCCCCc
Confidence 22222 233445556666 555543
No 377
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.75 E-value=27 Score=21.41 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=13.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCCC
Q 011236 149 REGLVDESLSLMQKMKEMGSFGS 171 (490)
Q Consensus 149 ~~g~~~~a~~~~~~m~~~~~~p~ 171 (490)
..|+++.|+..+-+|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 35666667766666665555544
No 378
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=22.46 E-value=3.2e+02 Score=22.37 Aligned_cols=16 Identities=6% Similarity=-0.174 Sum_probs=7.9
Q ss_pred HHHhhcCHHHHHHHHH
Q 011236 113 LIGKVRGLESAETYFN 128 (490)
Q Consensus 113 ~~~~~~~~~~A~~~~~ 128 (490)
..+..|+.+-+..+++
T Consensus 15 ~A~~~g~~~~v~~Ll~ 30 (282)
T 1oy3_D 15 LAVIHQHEPFLDFLLG 30 (282)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3444555555555444
No 379
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=21.91 E-value=88 Score=20.90 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=11.5
Q ss_pred CcHHHHHHHHHhCCCCCC
Q 011236 472 QEVDGLLESMKADDIDED 489 (490)
Q Consensus 472 ~~a~~~~~~m~~~~~~pd 489 (490)
.+..++.+.|.+.|+.|+
T Consensus 59 ~Kl~~~~e~l~~~GI~~e 76 (86)
T 3nr7_A 59 RKLQQYREMLIADGIDPN 76 (86)
T ss_dssp HHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHcCCCHH
Confidence 455566666667777665
No 380
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=21.74 E-value=2.8e+02 Score=21.42 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHhccCC
Q 011236 206 DNFSYRICINSYGARSE 222 (490)
Q Consensus 206 ~~~~~~~li~~~~~~g~ 222 (490)
+..+-...+.++.+.++
T Consensus 120 ~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 44343444444444443
No 381
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.62 E-value=3.3e+02 Score=22.14 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCCCCch-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011236 333 AEKMLEEWELSCYCYDFR-VPNIILLGYSQKGMIEKADAVLKEIVKKGKTP 382 (490)
Q Consensus 333 a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 382 (490)
...+|..|...|+..... .|......+...|++.+|..+|+.-++.+-.|
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334444444444433322 23344444444555555555555554444443
No 382
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=21.43 E-value=1.4e+02 Score=17.93 Aligned_cols=17 Identities=12% Similarity=0.520 Sum_probs=9.8
Q ss_pred CChhHHHHHHHHHHhCC
Q 011236 83 KRFKHALQVSEWMSGQG 99 (490)
Q Consensus 83 ~~~~~a~~~~~~~~~~~ 99 (490)
...++|..+-+++...+
T Consensus 20 HcH~EA~tIA~~L~~~~ 36 (61)
T 3ph0_C 20 HCHQEAASIADWLAQEE 36 (61)
T ss_dssp TCHHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 44566666666665554
No 383
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.33 E-value=2.5e+02 Score=20.69 Aligned_cols=15 Identities=7% Similarity=0.054 Sum_probs=6.4
Q ss_pred HHhhcCHHHHHHHHH
Q 011236 114 IGKVRGLESAETYFN 128 (490)
Q Consensus 114 ~~~~~~~~~A~~~~~ 128 (490)
.+..|+.+-+..+++
T Consensus 49 A~~~~~~~~v~~Ll~ 63 (165)
T 3twr_A 49 AAGYNRVSVVEYLLQ 63 (165)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcChHHHHHHHHh
Confidence 334444444444433
No 384
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A {Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A 3egm_A
Probab=21.22 E-value=2.9e+02 Score=21.38 Aligned_cols=46 Identities=11% Similarity=0.204 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhcccc-hhhhHHHHHHHHhcC
Q 011236 425 SLVSSILDWLGDNRDVEEVEAFVSSLKIKVQK-RNMYHALTEAHIRSG 471 (490)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 471 (490)
..|..++..+...||+..+. +++.+...... ...+..++.-+.+.|
T Consensus 113 ~~~~~l~~~A~~~~D~~t~~-~l~~~l~eqvEe~~~l~~~l~~l~~~g 159 (181)
T 3bvf_A 113 ESINNIVDHAIKSKDHATFN-FLQWYVAEQHEEEVLFKDILDKIELIG 159 (181)
T ss_dssp HHHHHHHHHHHHTTCHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444455544455544332 22223322222 223444444444444
No 385
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=20.75 E-value=2.2e+02 Score=21.27 Aligned_cols=15 Identities=0% Similarity=0.016 Sum_probs=6.5
Q ss_pred HHhhcCHHHHHHHHH
Q 011236 114 IGKVRGLESAETYFN 128 (490)
Q Consensus 114 ~~~~~~~~~A~~~~~ 128 (490)
.++.|+.+.+..+++
T Consensus 21 A~~~g~~~~v~~Ll~ 35 (169)
T 2y1l_E 21 AARAGRDDEVRILMA 35 (169)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 334444444444443
No 386
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=20.37 E-value=2.7e+02 Score=20.70 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=11.2
Q ss_pred HHHHHhhcCHHHHHHHHHH
Q 011236 111 LDLIGKVRGLESAETYFNS 129 (490)
Q Consensus 111 ~~~~~~~~~~~~A~~~~~~ 129 (490)
+...+..|+.+-+..+++.
T Consensus 51 L~~A~~~~~~~~v~~Ll~~ 69 (169)
T 2y1l_E 51 LHLAAFNGHLEIVEVLLKN 69 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 4455566776666666554
No 387
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=20.33 E-value=2.6e+02 Score=20.55 Aligned_cols=12 Identities=25% Similarity=0.002 Sum_probs=4.8
Q ss_pred HHcCCHHHHHHH
Q 011236 254 IIAGLKEKAIIY 265 (490)
Q Consensus 254 ~~~~~~~~a~~~ 265 (490)
++.|+.+....+
T Consensus 16 ~~~g~~~~v~~l 27 (165)
T 3twr_A 16 AKAGDVETVKKL 27 (165)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHhCCHHHHHHH
Confidence 334444443333
Done!