BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011237
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AD9|A Chain A, Crystal Structure Of Human Lactb2.
pdb|4AD9|B Chain B, Crystal Structure Of Human Lactb2.
pdb|4AD9|C Chain C, Crystal Structure Of Human Lactb2.
pdb|4AD9|D Chain D, Crystal Structure Of Human Lactb2.
pdb|4AD9|E Chain E, Crystal Structure Of Human Lactb2.
pdb|4AD9|F Chain F, Crystal Structure Of Human Lactb2
Length = 289
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 15/190 (7%)
Query: 260 VFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHE---NTMRRIGKDDWSLGYTSVSGSE 316
+ VTH HRDH G I + N D + N R + Y + +
Sbjct: 74 IVVTHWHRDHSGGIG----DICKSINNDTTYCIKKLPRNPQREEIIGNGEQQYVYLKDGD 129
Query: 317 DICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQS 376
I G L V+++PGHTD H+ALL N++ GD +G+G+ V + ++ DY S
Sbjct: 130 VIKTEGATLRVLYTPGHTDDHMALLLEEENAIFSGDCILGEGTTVFE-----DLYDYMNS 184
Query: 377 TYKFLELSPHALIPMHGRVNLWPKHMLCGYLKNRRAREAAILQAIENGVE---TLFDIVA 433
+ L++ + P HG V + + Y+ +R RE IL E T+ ++V
Sbjct: 185 LKELLKIKADIIYPGHGPVIHNAEAKIQQYISHRNIREQQILTLFRENFEKSFTVMELVK 244
Query: 434 NVYSEVPRSF 443
+Y P +
Sbjct: 245 IIYKNTPENL 254
>pdb|2XF4|A Chain A, Crystal Structure Of Salmonella Enterica Serovar
Typhimurium Ycbl
Length = 210
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 67/170 (39%), Gaps = 10/170 (5%)
Query: 232 ALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDG--EFIR--GLSIIQKCNPD 287
A +VDPG +E ++ +V AS + + +TH H DHV E + G+ +I D
Sbjct: 26 AALVDPGGDAEKIKQ--EVDASGVTLMQILLTHGHLDHVGAASELAQHYGVPVIGPEKED 83
Query: 288 AILLAHENTMRRIGKDDWSLGYTS---VSGSEDICVGGQRLTVVFSPGHTDGHVALLHAS 344
L R+ D T ++ + + VG L V+ PGHT GHV
Sbjct: 84 EFWLQGLPAQSRMFGLDECQPLTPDRWLNDGDRVSVGNVTLQVLHCPGHTPGHVVFFDEQ 143
Query: 345 TNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPH-ALIPMHG 393
+ LI GD G D G + K L L IP HG
Sbjct: 144 SQLLISGDVIFKGGVGRSDFPRGDHTQLIDAIKRKLLPLGDDVTFIPGHG 193
>pdb|2ZWR|A Chain A, Crystal Structure Of Ttha1623 From Thermus Thermophilus
Hb8
pdb|2ZWR|B Chain B, Crystal Structure Of Ttha1623 From Thermus Thermophilus
Hb8
pdb|2ZZI|A Chain A, Crystal Structure Of Ttha1623 In A Di-Iron-Bound Form
pdb|2ZZI|B Chain B, Crystal Structure Of Ttha1623 In A Di-Iron-Bound Form
Length = 207
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 67/179 (37%), Gaps = 15/179 (8%)
Query: 223 NHRFVAQGEA-LIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDG--EFIRGLS 279
N V GE +++DPG E L + +P L + +TH H DHV + L
Sbjct: 14 NAYLVETGEGPVLIDPGDEPEKLLALFQTTGLIP--LAILLTHAHFDHVGAVAPLVEALD 71
Query: 280 IIQKCNP-DAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVGGQRL---TVVFSPGHTD 335
+ +P D L + R W L G RL V+ PGH+
Sbjct: 72 LPVYLHPLDLPLYEGADLAARA----WGLAIPKPPLPVRPLEEGMRLFGFQVLHLPGHSP 127
Query: 336 GHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHALI-PMHG 393
GHVA + GD + +GS G + F S + L L P + P HG
Sbjct: 128 GHVAFYDPEGAQVFSGD-LLFRGSVGRYDLPGADPKALFASLKRLLSLPPETRVHPGHG 185
>pdb|2ZO4|A Chain A, Crystal Structure Of Metallo-Beta-Lactamase Family Protein
Ttha1429 From Thermus Thermophilus Hb8
Length = 317
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 315 SEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGD 352
E + V G+RL V+++PGH DGH A L+ GD
Sbjct: 153 GEALEVAGKRLRVLWTPGHADGHAAFYLEEEGVLLAGD 190
>pdb|2BR6|A Chain A, Crystal Structure Of Quorum-Quenching N-Acyl Homoserine
Lactone Lactonase
pdb|2BTN|A Chain A, Crystal Structure And Catalytic Mechanism Of The Quorum-
Quenching N-Acyl Homoserine Lactone Hydrolase
Length = 252
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 19/123 (15%)
Query: 247 LLKVVASLPRKLIVFVTHH-HRDHV--DGEFIRGLSIIQKCNPDAILLAHENTMRRIGKD 303
+LK V P L+ ++ H H DH +G F I+Q+ +A L E I
Sbjct: 88 ILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNTPIIVQRTEYEAALHREEYMKECILP- 146
Query: 304 DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLD 363
L Y + G ++ G Q L ++PGH+ GH +L + S GS +L
Sbjct: 147 --HLNYKIIEGDYEVVPGVQLL---YTPGHSPGHQSLFIKTEQS----------GSVLLT 191
Query: 364 ITA 366
I A
Sbjct: 192 IDA 194
>pdb|2A7M|A Chain A, 1.6 Angstrom Resolution Structure Of The Quorum-Quenching
N-Acyl Homoserine Lactone Hydrolase Of Bacillus
Thuringiensis
Length = 250
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 19/123 (15%)
Query: 247 LLKVVASLPRKLIVFVTHH-HRDHV--DGEFIRGLSIIQKCNPDAILLAHENTMRRIGKD 303
+LK V P L+ ++ H H DH +G F I+Q+ +A L E I
Sbjct: 86 ILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNTPIIVQRTEYEAALHREEYMKECILP- 144
Query: 304 DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLD 363
L Y + G ++ G Q L ++PGH+ GH +L + S GS +L
Sbjct: 145 --HLNYKIIEGDYEVVPGVQLL---YTPGHSPGHQSLFIETEQS----------GSVLLT 189
Query: 364 ITA 366
I A
Sbjct: 190 IDA 192
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 24/120 (20%)
Query: 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGL-SIIQKCNPDA 288
GEA+I+DP R L + + + +TH H+ +F G+ + K N +
Sbjct: 48 GEAMIIDP-IRD------LSSYIRVADEEGLTITHAAETHIHADFASGIRDVAIKLNANI 100
Query: 289 ILLAHENTMRRIGKDDWSLGYTS-------VSGSEDICVGGQRLTVVFSPGHTDGHVALL 341
+ G+ D +LGY + V ++DI VG +L V+ +PGHT ++ L
Sbjct: 101 YVS---------GESDDTLGYKNMPNHTHFVQHNDDIYVGNIKLKVLHTPGHTPESISFL 151
>pdb|3DHA|A Chain A, An Ultral High Resolution Structure Of N-Acyl Homoserine
Lactone Hydrolase With The Product
N-Hexanoyl-L-Homoserine Bound At An Alternative Site
pdb|3DHB|A Chain A, 1.4 Angstrom Structure Of N-Acyl Homoserine Lactone
Hydrolase With The Product N-Hexanoyl-L-Homoserine Bound
At The Catalytic Metal Center
pdb|3DHC|A Chain A, 1.3 Angstrom Structure Of N-Acyl Homoserine Lactone
Hydrolase With The Product N-Hexanoyl-L-Homocysteine
Bound To The Catalytic Metal Center
Length = 254
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 19/123 (15%)
Query: 247 LLKVVASLPRKLIVFVTHH-HRDHV--DGEFIRGLSIIQKCNPDAILLAHENTMRRIGKD 303
+LK V P L+ ++ H H DH +G F I+Q+ +A L E I
Sbjct: 90 ILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNTPIIVQRTEYEAALHREEYMKECILP- 148
Query: 304 DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLD 363
L Y + G ++ G Q L ++PGH+ GH +L + S GS +L
Sbjct: 149 --HLNYKIIEGDYEVVPGVQLL---YTPGHSPGHQSLFIETEQS----------GSVLLT 193
Query: 364 ITA 366
I A
Sbjct: 194 IDA 196
>pdb|1XM8|A Chain A, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|1XM8|B Chain B, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|2Q42|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
pdb|2Q42|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
Length = 254
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 22/127 (17%)
Query: 230 GEALIVDPGCRSEFHEELLKVVASLPRK----LIVFVTHHHRDHVDGEFIRGLSIIQKCN 285
G +VDP E ++ SL R + THHH DH G L + +
Sbjct: 23 GTVGVVDPS-------EAEPIIDSLKRSGRNLTYILNTHHHYDHTGG----NLELKDRYG 71
Query: 286 PDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAST 345
I A + RI D +L + G + V+ +PGHT GH++L +
Sbjct: 72 AKVIGSAMDKD--RIPGIDMAL-----KDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGS 124
Query: 346 NSLIVGD 352
++ GD
Sbjct: 125 RAIFTGD 131
>pdb|3ADR|A Chain A, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
pdb|3ADR|B Chain B, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
Length = 261
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 312 VSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGG--N 369
V G+E+ +GG R ++++PGH H ++L + L GD + V+ T +
Sbjct: 127 VEGNEEFDLGGYRXRLIYTPGHARHHXSVL--VDDFLFTGDSAGAYFNGVVIPTTPPVID 184
Query: 370 MTDYFQSTYKFLELSPHALIPMHG 393
Y +S + +EL P + HG
Sbjct: 185 YKXYXESLKRQIELKPKVVGFAHG 208
>pdb|3PGM|A Chain A, The Structure Of Yeast Phosphoglycerate Mutase At 0.28 Nm
Resolution
pdb|3PGM|B Chain B, The Structure Of Yeast Phosphoglycerate Mutase At 0.28 Nm
Resolution
Length = 244
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 24/119 (20%)
Query: 385 PHALIPMHGRVNLWPKHMLCGYL--------KNRRAREAAILQAIENGVETLFDIV---- 432
P ++ HG+ K++ G++ + AR +L+ E GV L D
Sbjct: 1 PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLK--EKGVNVLVDYTSKLS 58
Query: 433 -----ANVYSEVPRSFWIPAASNVRLHVDHLA-----DQNKLPKGFSLESFNSSLVEFD 481
AN+ E WIP + RL+ H D+ + K F E FN+ FD
Sbjct: 59 RAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAQTLKKFGEEKFNTYRRSFD 117
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 78/195 (40%), Gaps = 52/195 (26%)
Query: 230 GEALIVDPGCRSEFH-----EELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKC 284
GEA ++DP E + E L++VA+L H+ +F+ G
Sbjct: 27 GEACVIDPARDVEPYLLTAKREGLRIVAAL------------ETHIHADFVSGAREXADR 74
Query: 285 NPDAILLAHENTMRRIGKDDWSLGYTS------VSGSEDICVGGQRLTVVFSPGHTDGHV 338
AI ++ E G +W Y + +++ G R+ V +PGHT HV
Sbjct: 75 AGAAICVSDE------GPPEWKSEYVKAYPHRLLKDGDELHFGNVRIVVXHTPGHTPEHV 128
Query: 339 A-LLHASTNS------------LIVGDHCVGQGSAVLDITAGGNMTD------YFQSTYK 379
+ LL+ S + VGD VG+ +L+ AG + + F+S K
Sbjct: 129 SYLLYDGKTSPDVPXALFSGDFVFVGD--VGRPD-LLERVAGESGSSEALARQXFRSLRK 185
Query: 380 FLELSPHA-LIPMHG 393
F L H ++P HG
Sbjct: 186 FEALPDHVQVLPAHG 200
>pdb|1Z1N|X Chain X, Crystal Structure Of The Sixteen Heme Cytochrome From
Desulfovibrio Gigas
Length = 560
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 140 STQSCINCLAEVKPSTDRVGPLVVIGLLNDLVQ--WRKWKVPPTLSYQEYPPGVILVPMQ 197
S +SC+NC + + GP++ +G Q W+K P L ++ P +LV
Sbjct: 228 SHESCVNCHLSTRKAQTESGPVLCVGCHTAEAQAAWKKTAETPRL-FRGQPDATLLV-AG 285
Query: 198 SRTAKPFLTTNLIVFAPDSVSDD 220
+ TA + N P V+ D
Sbjct: 286 AATANGTVDVNWAAAGPGPVAFD 308
>pdb|2QED|A Chain A, Crystal Structure Of Salmonella Thyphimurium Lt2
Glyoxalase Ii
Length = 258
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 72/166 (43%), Gaps = 30/166 (18%)
Query: 229 QGEALIVDPGCRSEFHEELLKVVAS---LPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCN 285
+G +IVDPG + +LK +A +P +F+THHH DHV G +++
Sbjct: 28 EGRCVIVDPGEAAP----VLKAIAEHKWMPEA--IFLTHHHHDHVGG--------VKE-- 71
Query: 286 PDAILLAHENTMRRIG-KDDWSLGYTSVSGSED-ICVGGQRLTVVFSPGHTDGHVALLHA 343
LL H M G + G T + G D I V G++ T+ +PGHT GHV +
Sbjct: 72 ----LLQHFPQMTVYGPAETQDKGATHLVGDGDTIRVLGEKFTLFATPGHTLGHVC--YF 125
Query: 344 STNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHALI 389
S L GD G L G + +QS K L LI
Sbjct: 126 SRPYLFCGDTLFSGGCGRL---FEGTPSQMYQSLMKINSLPDDTLI 168
>pdb|2D0A|A Chain A, Crystal Structure Of Bst-Rnase Hiii
pdb|2D0B|A Chain A, Crystal Structure Of Bst-Rnase Hiii In Complex With Mg2+
pdb|2D0C|A Chain A, Crystal Structure Of Bst-Rnase Hiii In Complex With Mn2+
Length = 310
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 118 TVYIMGKLL-DGNQILQEGCKWMSTQSCINCLAEVKPS---TDRVGPLVVIG 165
T Y GK+L G QE KW+S S N A+ +PS ++G L IG
Sbjct: 44 TAYRSGKVLFQGKAAEQEAAKWISGASASNETADHQPSALAAHQLGSLSAIG 95
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 31/140 (22%)
Query: 272 GEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDW--------------SLGYTSVSGSED 317
G+ +RG + K + + I A E+ +R G D+ ++GYT E+
Sbjct: 301 GDVVRGPMLAHKASEEGIA-AVEHMVRGFGHVDYQAIPSVVYTHPEIAAVGYTE----EE 355
Query: 318 ICVGGQRLTVVFSP----------GHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAG 367
+ G V P G T+G + +L + I+G H G G+ V D+ A
Sbjct: 356 LKAQGIPYKVGKFPYSASGRARAMGETEGFIKVLAHAKTDRILGVH--GIGARVGDVLAE 413
Query: 368 GNMTDYFQSTYKFLELSPHA 387
+ +F+++ + L +PHA
Sbjct: 414 AALALFFKASAEDLGRAPHA 433
>pdb|1SML|A Chain A, Metallo Beta Lactamase L1 From Stenotrophomonas
Maltophilia
pdb|2AIO|A Chain A, Metallo Beta Lactamase L1 From Stenotrophomonas
Maltophilia Complexed With Hydrolyzed Moxalactam
pdb|2FM6|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Native Form)
pdb|2FM6|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Native Form)
pdb|2FU6|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Apo Form)
pdb|2FU6|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Apo Form)
pdb|2FU7|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Cu- Substituted Form)
pdb|2FU7|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Cu- Substituted Form)
pdb|2FU8|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(D-Captopril Complex)
pdb|2FU8|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(D-Captopril Complex)
pdb|2FU9|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Mp2 Inhibitor Complex)
pdb|2FU9|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Mp2 Inhibitor Complex)
pdb|2GFJ|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 1)
pdb|2GFJ|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 1)
pdb|2GFK|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 2)
pdb|2GFK|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 2)
pdb|2H6A|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Mono Zinc Form)
pdb|2H6A|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Mono Zinc Form)
pdb|2HB9|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 3)
pdb|2QDT|A Chain A, Structural Basis For The Broad-Spectrum Inhibition Of
Metallo-{beta}- Lactamases: L1- Is38 Complex
Length = 269
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 18/105 (17%)
Query: 248 LKVVASLPRKL-IVFVTHHHRDHVD--GEFIRGLSIIQKCNPDAILLAHENTMRRIGKDD 304
+K PR L ++ ++H H DH E R N ++ +L + R G DD
Sbjct: 67 MKARGVTPRDLRLILLSHAHADHAGPVAELKRRTGAKVAANAESAVL-----LARGGSDD 121
Query: 305 WSLG----YTSVSG------SEDICVGGQRLTVVFSPGHTDGHVA 339
G Y + E I VGG T F GHT G A
Sbjct: 122 LHFGDGITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPGSTA 166
>pdb|3KL7|A Chain A, Crystal Structure Of Putative Metal-dependent Hydrolase
(yp_001302908.1) From Parabacteroides Distasonis Atcc
8503 At 2.30 A Resolution
Length = 235
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 19/111 (17%)
Query: 252 ASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRI--------GKD 303
+ P+ I+ +TH H DH+D + I+ + D ++A+EN+ +++ G
Sbjct: 61 TTFPKADIILITHEHGDHLDPKAIQAVE-----KSDTEIIANENSQKKLGKGKVLKNGDT 115
Query: 304 DWSLGYTSVSG--SEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGD 352
D S+ Y + + + G + + P H D L I GD
Sbjct: 116 DTSISYXKIEAVPAYNTTPGRDK----YHPRHRDNGYILTFDGLRVYIAGD 162
>pdb|2NXA|A Chain A, Structure Of Zn-Dependent Metallo-Beta-Lactamase From
Bacillus Cereus R121h, C221d Double Mutant
pdb|2NYP|A Chain A, Structure Of Beta-Lactamase Ii From Bacillus Cereus.
R121h, C221d Doble Mutant With Two Zinc Ions
Length = 221
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 71/173 (41%), Gaps = 22/173 (12%)
Query: 233 LIVDPGCRSEFHEELLKVVASLPRKLI--VFVTHHHRDHVDG-EFIRGLSIIQKCNPDAI 289
++VD + +EL+++V +K + V +TH H DH+ G + ++ I
Sbjct: 47 VLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADHIGGIKTLKERGIKAHSTALTA 106
Query: 290 LLAHENTMRRIGKDDWSLGYTSVSGS----EDICVGGQRLTVVF-SPGHTDGHVALLHAS 344
LA +N GY G ++ G ++ + GHT+ ++ +
Sbjct: 107 ELAKKN------------GYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQ 154
Query: 345 TNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLE--LSPHALIPMHGRV 395
N L+ GD + L A + ++ S L+ + +A++P HG V
Sbjct: 155 YNILVGGDLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEV 207
>pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH3|B Chain B, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH5|A Chain A, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
pdb|1QH5|B Chain B, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
Length = 260
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
Query: 231 EALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAIL 290
EA IVDP + + K L V THHH DH G + L
Sbjct: 24 EAAIVDPVQPQKVVDAARKHGVKL---TTVLTTHHHWDHAGG--------------NEKL 66
Query: 291 LAHENTMRRIGKDDWSLGYT-SVSGSEDICVGGQRLTVVFSPGHTDGHVALL 341
+ E+ ++ G DD T ++ + VG + + +P HT GH+
Sbjct: 67 VKLESGLKVYGGDDRIGALTHKITHLSTLQVGSLNVKCLATPCHTSGHICYF 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,262,151
Number of Sequences: 62578
Number of extensions: 704184
Number of successful extensions: 1578
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1564
Number of HSP's gapped (non-prelim): 25
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)