Query 011237
Match_columns 490
No_of_seqs 466 out of 3001
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 23:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02398 hydroxyacylglutathion 99.9 5.7E-26 1.2E-30 229.3 21.9 179 231-427 99-281 (329)
2 TIGR03413 GSH_gloB hydroxyacyl 99.9 1.8E-25 3.9E-30 219.3 21.7 178 231-428 21-202 (248)
3 PLN02469 hydroxyacylglutathion 99.9 8.1E-25 1.8E-29 215.5 22.3 151 230-399 23-181 (258)
4 PRK10241 hydroxyacylglutathion 99.9 6.4E-25 1.4E-29 215.7 18.9 178 230-428 22-203 (251)
5 PRK11921 metallo-beta-lactamas 99.9 7.3E-24 1.6E-28 221.4 23.2 211 185-408 1-240 (394)
6 PRK05452 anaerobic nitric oxid 99.9 7.7E-24 1.7E-28 225.6 19.5 212 185-408 3-244 (479)
7 PLN02962 hydroxyacylglutathion 99.9 1.5E-23 3.2E-28 205.3 19.4 149 230-394 36-193 (251)
8 KOG0813 Glyoxylase [General fu 99.9 2E-23 4.4E-28 201.5 15.8 173 232-421 27-204 (265)
9 COG0491 GloB Zn-dependent hydr 99.9 5E-20 1.1E-24 178.3 20.8 158 231-394 36-212 (252)
10 COG0426 FpaA Uncharacterized f 99.8 1.1E-19 2.3E-24 184.5 21.8 213 182-409 2-240 (388)
11 smart00849 Lactamase_B Metallo 99.8 2.2E-18 4.7E-23 159.2 19.5 163 222-392 5-183 (183)
12 PF00753 Lactamase_B: Metallo- 99.8 7E-19 1.5E-23 162.3 12.4 166 222-392 5-194 (194)
13 PF14597 Lactamase_B_5: Metall 99.7 2.5E-16 5.5E-21 142.4 14.9 159 230-407 32-196 (199)
14 KOG0814 Glyoxylase [General fu 99.7 4.2E-16 9.2E-21 139.5 10.9 158 222-395 20-184 (237)
15 COG2015 Alkyl sulfatase and re 99.4 2.6E-12 5.7E-17 131.1 15.6 227 181-435 107-392 (655)
16 TIGR00649 MG423 conserved hypo 99.4 2.5E-12 5.5E-17 135.8 14.9 132 220-356 11-162 (422)
17 PRK00685 metal-dependent hydro 99.2 1.3E-10 2.8E-15 112.3 11.9 163 223-396 8-196 (228)
18 COG1237 Metal-dependent hydrol 99.1 2.1E-09 4.6E-14 103.5 15.3 74 220-298 19-96 (259)
19 COG0595 mRNA degradation ribon 99.1 4.9E-09 1.1E-13 112.8 17.9 131 222-357 21-171 (555)
20 PRK11539 ComEC family competen 99.1 4.5E-09 9.8E-14 118.7 18.5 109 230-353 520-640 (755)
21 TIGR03675 arCOG00543 arCOG0054 99.0 1.3E-09 2.8E-14 120.0 11.3 132 218-355 183-349 (630)
22 PRK02113 putative hydrolase; P 99.0 5.9E-09 1.3E-13 102.5 14.7 120 223-354 35-171 (252)
23 TIGR02649 true_RNase_BN ribonu 99.0 3.2E-09 6.8E-14 107.4 10.8 116 220-343 14-149 (303)
24 PRK11244 phnP carbon-phosphoru 98.9 1.7E-08 3.6E-13 99.2 14.5 113 230-354 46-164 (250)
25 TIGR02651 RNase_Z ribonuclease 98.9 4.9E-09 1.1E-13 105.6 10.9 114 222-343 17-147 (299)
26 TIGR03307 PhnP phosphonate met 98.9 1.2E-08 2.6E-13 99.5 13.0 113 230-354 36-154 (238)
27 TIGR00361 ComEC_Rec2 DNA inter 98.9 5.7E-08 1.2E-12 108.4 18.4 113 230-353 459-583 (662)
28 PRK04286 hypothetical protein; 98.9 3.3E-08 7.3E-13 99.7 14.8 131 219-354 11-187 (298)
29 TIGR02108 PQQ_syn_pqqB coenzym 98.9 1.4E-08 3.1E-13 102.5 10.9 123 223-353 38-199 (302)
30 PRK05184 pyrroloquinoline quin 98.8 2.3E-08 4.9E-13 101.2 11.5 123 223-353 39-199 (302)
31 PRK11709 putative L-ascorbate 98.8 7E-08 1.5E-12 99.4 14.3 141 254-397 107-287 (355)
32 PF12706 Lactamase_B_2: Beta-l 98.7 8.7E-09 1.9E-13 96.4 4.7 116 232-355 2-140 (194)
33 PRK02126 ribonuclease Z; Provi 98.7 1.3E-07 2.8E-12 96.9 12.5 102 230-343 27-172 (334)
34 KOG4736 Uncharacterized conser 98.6 1E-07 2.2E-12 93.0 7.2 149 230-399 104-261 (302)
35 COG2333 ComEC Predicted hydrol 98.6 9.7E-07 2.1E-11 88.2 13.8 118 230-353 63-191 (293)
36 COG1236 YSH1 Predicted exonucl 98.5 1.7E-07 3.7E-12 99.0 5.8 126 223-354 14-165 (427)
37 PF13483 Lactamase_B_3: Beta-l 98.4 1.2E-06 2.5E-11 80.3 9.9 137 223-392 7-163 (163)
38 COG1782 Predicted metal-depend 98.4 3.3E-06 7.1E-11 87.8 12.1 133 218-356 189-356 (637)
39 COG2220 Predicted Zn-dependent 98.2 2.2E-05 4.7E-10 77.5 13.7 167 223-394 14-213 (258)
40 PRK00055 ribonuclease Z; Revie 98.1 4.7E-06 1E-10 82.3 6.3 72 222-300 19-98 (270)
41 TIGR02650 RNase_Z_T_toga ribon 97.9 3.7E-05 8.1E-10 76.0 9.1 101 223-333 11-134 (277)
42 COG2248 Predicted hydrolase (m 97.7 0.0015 3.3E-08 62.9 14.8 45 309-353 133-185 (304)
43 PF00293 NUDIX: NUDIX domain; 97.5 0.00014 3.1E-09 63.3 5.3 114 6-152 5-124 (134)
44 KOG1136 Predicted cleavage and 97.4 0.00022 4.7E-09 71.0 5.2 120 229-354 25-180 (501)
45 COG1234 ElaC Metal-dependent h 97.2 0.00065 1.4E-08 68.5 6.1 61 230-297 29-95 (292)
46 KOG1137 mRNA cleavage and poly 96.9 0.0011 2.3E-08 70.0 4.8 123 224-354 28-183 (668)
47 COG1235 PhnP Metal-dependent h 96.9 0.00084 1.8E-08 66.8 3.7 54 230-293 40-93 (269)
48 cd04661 MRP_L46 Mitochondrial 96.6 0.0093 2E-07 52.6 7.7 103 14-148 10-121 (132)
49 cd03428 Ap4A_hydrolase_human_l 96.5 0.011 2.5E-07 51.4 7.9 106 7-149 6-117 (130)
50 KOG1135 mRNA cleavage and poly 96.4 0.03 6.4E-07 60.9 11.8 128 221-353 15-172 (764)
51 PF02112 PDEase_II: cAMP phosp 96.3 0.021 4.5E-07 58.5 9.6 43 256-303 79-126 (335)
52 cd04700 DR1025_like DR1025 fro 96.3 0.016 3.4E-07 51.8 7.7 108 8-152 18-130 (142)
53 cd04664 Nudix_Hydrolase_7 Memb 96.1 0.037 7.9E-07 48.2 9.1 111 7-149 5-120 (129)
54 cd03673 Ap6A_hydrolase Diadeno 96.1 0.037 8E-07 47.9 9.0 108 7-149 5-118 (131)
55 cd04666 Nudix_Hydrolase_9 Memb 96.0 0.029 6.3E-07 48.8 7.9 98 16-149 14-117 (122)
56 cd03424 ADPRase_NUDT5 ADP-ribo 96.0 0.034 7.4E-07 48.9 8.2 109 7-152 6-120 (137)
57 cd04691 Nudix_Hydrolase_32 Mem 95.9 0.04 8.6E-07 47.4 8.0 97 17-148 11-109 (117)
58 cd03430 GDPMH GDP-mannose glyc 95.7 0.055 1.2E-06 48.5 8.4 108 6-146 15-131 (144)
59 KOG1361 Predicted hydrolase in 95.7 0.018 3.9E-07 61.0 5.8 90 256-354 112-206 (481)
60 cd04696 Nudix_Hydrolase_37 Mem 95.6 0.067 1.5E-06 46.3 8.6 106 6-146 5-113 (125)
61 cd04690 Nudix_Hydrolase_31 Mem 95.5 0.053 1.1E-06 46.3 7.4 94 17-144 12-107 (118)
62 cd03672 Dcp2p mRNA decapping e 95.5 0.052 1.1E-06 48.8 7.6 106 6-151 4-115 (145)
63 cd03426 CoAse Coenzyme A pyrop 95.5 0.042 9.1E-07 50.0 7.1 105 7-146 6-117 (157)
64 cd04679 Nudix_Hydrolase_20 Mem 95.5 0.066 1.4E-06 46.3 8.0 105 7-148 6-116 (125)
65 cd04688 Nudix_Hydrolase_29 Mem 95.4 0.057 1.2E-06 46.8 7.4 103 4-145 2-116 (126)
66 cd04683 Nudix_Hydrolase_24 Mem 95.3 0.065 1.4E-06 45.9 7.2 101 17-149 11-116 (120)
67 cd04687 Nudix_Hydrolase_28 Mem 95.3 0.079 1.7E-06 46.1 7.8 105 5-144 3-118 (128)
68 PRK09438 nudB dihydroneopterin 95.3 0.095 2.1E-06 46.9 8.6 104 6-148 10-130 (148)
69 cd04684 Nudix_Hydrolase_25 Con 95.2 0.088 1.9E-06 45.3 7.7 99 17-146 11-116 (128)
70 cd04678 Nudix_Hydrolase_19 Mem 95.1 0.12 2.6E-06 44.9 8.3 106 6-147 5-117 (129)
71 cd03427 MTH1 MutT homolog-1 (M 95.0 0.074 1.6E-06 46.7 6.9 96 17-146 12-110 (137)
72 cd04693 Nudix_Hydrolase_34 Mem 95.0 0.14 3.1E-06 44.4 8.4 108 9-152 6-118 (127)
73 TIGR00052 nudix-type nucleosid 94.9 0.064 1.4E-06 50.3 6.6 107 16-152 56-170 (185)
74 cd04672 Nudix_Hydrolase_14 Mem 94.9 0.12 2.6E-06 44.6 7.6 94 17-144 13-109 (123)
75 cd04695 Nudix_Hydrolase_36 Mem 94.8 0.16 3.5E-06 44.4 8.4 98 16-148 13-115 (131)
76 PRK15434 GDP-mannose mannosyl 94.5 0.18 4E-06 46.1 8.2 107 6-146 20-136 (159)
77 cd03675 Nudix_Hydrolase_2 Cont 94.4 0.22 4.7E-06 43.5 8.4 99 16-149 10-113 (134)
78 cd02883 Nudix_Hydrolase Nudix 94.2 0.18 3.8E-06 42.4 7.1 103 7-146 4-111 (123)
79 PRK10729 nudF ADP-ribose pyrop 94.2 0.23 4.9E-06 47.4 8.4 106 17-152 62-176 (202)
80 cd04680 Nudix_Hydrolase_21 Mem 94.1 0.22 4.7E-06 42.4 7.5 100 6-146 3-107 (120)
81 cd04682 Nudix_Hydrolase_23 Mem 94.0 0.32 6.9E-06 41.9 8.5 98 17-147 12-114 (122)
82 PF14234 DUF4336: Domain of un 93.9 0.54 1.2E-05 47.0 10.7 122 230-356 30-161 (285)
83 cd04673 Nudix_Hydrolase_15 Mem 93.8 0.26 5.7E-06 42.0 7.6 100 17-147 11-114 (122)
84 PRK15009 GDP-mannose pyrophosp 93.8 0.27 5.8E-06 46.4 8.0 114 8-152 50-171 (191)
85 cd04686 Nudix_Hydrolase_27 Mem 93.7 0.32 7E-06 42.6 8.0 96 17-148 11-120 (131)
86 cd04694 Nudix_Hydrolase_35 Mem 93.7 0.44 9.5E-06 42.7 8.9 116 5-151 3-135 (143)
87 PRK11762 nudE adenosine nucleo 93.6 0.38 8.1E-06 45.0 8.7 102 16-152 58-164 (185)
88 KOG3798 Predicted Zn-dependent 93.6 0.28 6.1E-06 47.6 7.7 100 249-354 125-240 (343)
89 PRK10546 pyrimidine (deoxy)nuc 93.4 0.45 9.7E-06 41.5 8.5 104 5-146 6-111 (135)
90 cd04681 Nudix_Hydrolase_22 Mem 93.4 0.34 7.4E-06 42.0 7.6 104 5-144 3-112 (130)
91 PRK00714 RNA pyrophosphohydrol 93.0 0.27 5.7E-06 44.7 6.4 109 7-150 12-138 (156)
92 cd04676 Nudix_Hydrolase_17 Mem 92.6 0.41 8.9E-06 41.0 6.9 105 5-146 4-116 (129)
93 cd04511 Nudix_Hydrolase_4 Memb 92.6 0.58 1.3E-05 40.8 7.9 91 16-144 23-116 (130)
94 cd03671 Ap4A_hydrolase_plant_l 92.5 0.44 9.5E-06 42.6 7.1 107 7-149 7-133 (147)
95 cd03429 NADH_pyrophosphatase N 92.2 0.83 1.8E-05 40.0 8.3 92 17-147 12-107 (131)
96 cd04699 Nudix_Hydrolase_39 Mem 91.8 0.93 2E-05 38.8 8.1 105 6-144 4-111 (129)
97 cd03425 MutT_pyrophosphohydrol 91.2 1.1 2.4E-05 37.8 7.9 93 17-145 13-108 (124)
98 PRK05379 bifunctional nicotina 91.2 0.76 1.7E-05 47.4 8.1 99 16-146 213-321 (340)
99 cd04692 Nudix_Hydrolase_33 Mem 91.2 1.4 3.1E-05 39.1 8.9 115 10-153 9-133 (144)
100 cd02885 IPP_Isomerase Isopente 91.2 1.3 2.8E-05 40.5 8.8 113 7-152 34-153 (165)
101 cd04671 Nudix_Hydrolase_13 Mem 90.8 1.2 2.5E-05 38.7 7.7 100 4-144 1-107 (123)
102 cd04669 Nudix_Hydrolase_11 Mem 90.6 0.74 1.6E-05 39.6 6.3 97 5-144 2-111 (121)
103 cd04677 Nudix_Hydrolase_18 Mem 90.4 0.8 1.7E-05 39.6 6.4 99 17-150 19-125 (132)
104 cd04689 Nudix_Hydrolase_30 Mem 90.4 1.4 3.1E-05 37.8 7.9 99 5-143 3-110 (125)
105 cd03674 Nudix_Hydrolase_1 Memb 90.0 1.8 3.9E-05 38.2 8.4 95 17-146 15-122 (138)
106 cd04667 Nudix_Hydrolase_10 Mem 89.1 1.7 3.6E-05 36.7 7.2 88 16-147 10-101 (112)
107 cd04670 Nudix_Hydrolase_12 Mem 89.0 2 4.3E-05 37.0 7.7 102 6-146 5-112 (127)
108 PRK15472 nucleoside triphospha 88.7 2 4.4E-05 37.8 7.8 100 16-146 14-124 (141)
109 PLN02325 nudix hydrolase 88.4 2.2 4.7E-05 38.1 7.8 94 17-143 20-121 (144)
110 cd04697 Nudix_Hydrolase_38 Mem 88.4 4.7 0.0001 34.8 9.7 102 17-152 12-117 (126)
111 PRK10776 nucleoside triphospha 88.3 3 6.6E-05 35.5 8.4 101 7-145 8-111 (129)
112 PHA02943 hypothetical protein; 87.0 1.5 3.2E-05 39.5 5.5 58 408-475 7-64 (165)
113 COG5212 PDE1 Low-affinity cAMP 85.2 1.3 2.9E-05 43.6 4.7 92 256-353 112-232 (356)
114 PRK03759 isopentenyl-diphospha 85.0 6.4 0.00014 36.6 9.2 74 78-153 79-158 (184)
115 TIGR00586 mutt mutator mutT pr 84.6 5.7 0.00012 33.9 8.2 91 17-143 16-109 (128)
116 PRK15393 NUDIX hydrolase YfcD; 84.6 7.3 0.00016 36.2 9.4 109 8-152 42-154 (180)
117 PF01022 HTH_5: Bacterial regu 83.1 1.8 4E-05 30.7 3.7 41 416-465 6-46 (47)
118 PF03965 Penicillinase_R: Peni 82.7 3.6 7.9E-05 35.2 6.1 59 413-476 4-63 (115)
119 KOG2121 Predicted metal-depend 82.6 0.56 1.2E-05 51.9 1.2 46 232-283 473-523 (746)
120 PF13691 Lactamase_B_4: tRNase 81.5 4.2 9E-05 31.2 5.2 40 230-271 21-62 (63)
121 TIGR02150 IPP_isom_1 isopenten 81.5 8.8 0.00019 34.7 8.5 72 79-152 71-147 (158)
122 PRK00241 nudC NADH pyrophospha 80.9 4 8.7E-05 40.3 6.4 90 16-144 142-235 (256)
123 smart00550 Zalpha Z-DNA-bindin 80.7 4.9 0.00011 31.1 5.6 53 414-475 8-64 (68)
124 cd03670 ADPRase_NUDT9 ADP-ribo 80.6 4.7 0.0001 37.9 6.4 103 9-145 41-169 (186)
125 cd04674 Nudix_Hydrolase_16 Mem 80.3 4.2 9.2E-05 35.2 5.6 80 41-145 28-113 (118)
126 COG3682 Predicted transcriptio 80.3 6 0.00013 34.5 6.4 59 414-477 8-67 (123)
127 PF04703 FaeA: FaeA-like prote 80.2 2.1 4.6E-05 32.7 3.3 43 416-467 4-48 (62)
128 cd04662 Nudix_Hydrolase_5 Memb 76.6 9.9 0.00021 33.4 6.8 95 16-140 14-125 (126)
129 TIGR02698 CopY_TcrY copper tra 76.0 8.3 0.00018 33.9 6.3 57 415-476 7-64 (130)
130 PF01978 TrmB: Sugar-specific 75.5 10 0.00022 29.0 6.0 50 412-470 8-58 (68)
131 cd04685 Nudix_Hydrolase_26 Mem 75.1 19 0.00041 31.6 8.4 99 17-146 12-122 (133)
132 PRK08999 hypothetical protein; 74.8 14 0.00031 37.2 8.6 100 6-143 8-110 (312)
133 PF03551 PadR: Transcriptional 74.7 3.9 8.5E-05 32.0 3.5 53 417-470 1-53 (75)
134 PF12840 HTH_20: Helix-turn-he 74.4 6.2 0.00014 29.6 4.4 45 416-469 14-59 (61)
135 cd04665 Nudix_Hydrolase_8 Memb 73.3 11 0.00025 32.4 6.4 88 16-143 10-101 (118)
136 PF07789 DUF1627: Protein of u 73.1 4.1 8.8E-05 36.5 3.5 50 422-480 3-52 (155)
137 PF05402 PqqD: Coenzyme PQQ sy 73.1 9.6 0.00021 29.0 5.3 53 411-465 16-68 (68)
138 PLN03143 nudix hydrolase; Prov 72.2 8.2 0.00018 38.9 5.9 103 18-152 144-270 (291)
139 TIGR02705 nudix_YtkD nucleosid 71.9 19 0.00041 32.8 7.7 109 15-163 33-143 (156)
140 TIGR03859 PQQ_PqqD coenzyme PQ 71.1 11 0.00024 30.2 5.4 49 414-465 33-81 (81)
141 COG1051 ADP-ribose pyrophospha 69.4 26 0.00057 31.3 8.1 93 18-145 22-120 (145)
142 PHA00738 putative HTH transcri 68.9 11 0.00024 32.0 5.0 55 416-479 16-71 (108)
143 PF08220 HTH_DeoR: DeoR-like h 67.9 9.2 0.0002 28.4 4.0 50 414-472 2-52 (57)
144 PF01726 LexA_DNA_bind: LexA D 67.7 14 0.00029 28.5 5.0 37 425-469 25-61 (65)
145 KOG3592 Microtubule-associated 66.4 6.7 0.00014 43.6 4.1 51 224-281 51-101 (934)
146 PRK10141 DNA-binding transcrip 65.7 14 0.0003 32.0 5.2 54 416-478 20-74 (117)
147 smart00346 HTH_ICLR helix_turn 65.0 18 0.00038 29.0 5.6 55 412-475 5-61 (91)
148 PRK10707 putative NUDIX hydrol 62.8 25 0.00054 33.0 6.8 99 16-147 43-146 (190)
149 PF13412 HTH_24: Winged helix- 62.6 27 0.00058 24.5 5.5 43 414-465 5-48 (48)
150 PRK05638 threonine synthase; V 62.0 17 0.00038 38.8 6.3 93 369-473 324-425 (442)
151 COG2345 Predicted transcriptio 60.7 12 0.00027 36.0 4.3 48 415-471 14-62 (218)
152 PF09012 FeoC: FeoC like trans 57.7 16 0.00035 28.1 3.9 48 415-471 3-51 (69)
153 PF01475 FUR: Ferric uptake re 52.6 53 0.0011 28.0 6.7 60 416-479 12-74 (120)
154 smart00418 HTH_ARSR helix_turn 51.6 33 0.00071 24.7 4.6 50 418-476 3-52 (66)
155 cd03676 Nudix_hydrolase_3 Memb 51.3 39 0.00084 31.1 6.0 73 78-152 81-163 (180)
156 cd07153 Fur_like Ferric uptake 51.0 39 0.00084 28.5 5.6 57 416-476 5-64 (116)
157 PF09339 HTH_IclR: IclR helix- 50.9 28 0.00061 25.1 4.0 47 412-467 3-51 (52)
158 PF08279 HTH_11: HTH domain; 50.8 32 0.00069 24.8 4.3 41 413-462 1-43 (55)
159 PRK10046 dpiA two-component re 47.7 29 0.00063 32.9 4.7 48 416-472 166-215 (225)
160 PRK10434 srlR DNA-bindng trans 47.0 30 0.00065 34.1 4.8 52 411-471 4-56 (256)
161 PF10557 Cullin_Nedd8: Cullin 46.3 59 0.0013 25.0 5.4 56 414-470 10-66 (68)
162 PRK15431 ferrous iron transpor 44.9 52 0.0011 26.3 4.8 47 415-470 5-52 (78)
163 cd02791 MopB_CT_Nitrate-R-NapA 44.3 1.4E+02 0.003 25.1 8.1 63 264-340 15-81 (122)
164 COG4565 CitB Response regulato 43.1 44 0.00096 32.1 4.9 58 414-480 160-219 (224)
165 PRK02079 pyrroloquinoline quin 42.8 61 0.0013 26.5 5.1 49 414-465 38-86 (88)
166 PLN02709 nudix hydrolase 41.8 1E+02 0.0022 29.9 7.3 95 16-144 50-152 (222)
167 cd00508 MopB_CT_Fdh-Nap-like T 40.6 1.8E+02 0.0038 24.3 8.1 55 277-341 24-82 (120)
168 cd04663 Nudix_Hydrolase_6 Memb 40.5 78 0.0017 27.7 5.8 54 5-93 2-55 (126)
169 PF05584 Sulfolobus_pRN: Sulfo 37.3 73 0.0016 25.1 4.5 48 414-470 7-54 (72)
170 cd05560 Xcc1710_like Xcc1710_l 37.2 79 0.0017 26.8 5.2 27 373-399 41-67 (109)
171 smart00420 HTH_DEOR helix_turn 37.0 70 0.0015 22.1 4.3 44 416-468 4-48 (53)
172 cd02792 MopB_CT_Formate-Dh-Na- 37.0 2.2E+02 0.0047 23.9 8.1 55 277-341 24-82 (122)
173 COG0640 ArsR Predicted transcr 36.1 82 0.0018 24.7 5.1 52 416-476 29-81 (110)
174 COG3355 Predicted transcriptio 36.1 1.1E+02 0.0023 27.0 5.9 51 422-481 39-94 (126)
175 PF06163 DUF977: Bacterial pro 35.7 1.2E+02 0.0026 26.6 6.1 57 410-475 10-67 (127)
176 COG4742 Predicted transcriptio 34.6 77 0.0017 31.4 5.3 43 416-467 17-59 (260)
177 TIGR00122 birA_repr_reg BirA b 34.4 1.2E+02 0.0025 23.1 5.4 49 416-473 4-52 (69)
178 COG4189 Predicted transcriptio 33.6 1.1E+02 0.0025 29.7 6.0 52 416-476 27-84 (308)
179 PRK09416 lstR lineage-specific 30.9 1.1E+02 0.0023 27.3 5.1 57 412-470 43-99 (135)
180 PRK13518 carboxylate-amine lig 29.7 45 0.00097 34.7 3.0 99 53-153 50-157 (357)
181 PRK13516 gamma-glutamyl:cystei 29.6 38 0.00083 35.4 2.5 130 23-153 7-156 (373)
182 PF13601 HTH_34: Winged helix 29.5 93 0.002 24.8 4.2 45 417-470 5-50 (80)
183 cd02786 MopB_CT_3 The MopB_CT_ 29.3 3.1E+02 0.0068 22.7 7.8 53 278-340 21-77 (116)
184 TIGR02702 SufR_cyano iron-sulf 28.7 96 0.0021 29.2 4.9 43 416-467 5-48 (203)
185 PRK12423 LexA repressor; Provi 28.4 1.3E+02 0.0028 28.3 5.7 52 410-469 8-61 (202)
186 PLN02552 isopentenyl-diphospha 28.1 1.4E+02 0.003 29.3 6.0 74 78-151 118-207 (247)
187 PF13034 DUF3895: Protein of u 27.8 1.6E+02 0.0035 23.6 5.0 49 425-473 18-72 (78)
188 PF14947 HTH_45: Winged helix- 27.1 1.7E+02 0.0036 23.0 5.3 53 412-475 6-58 (77)
189 PF02186 TFIIE_beta: TFIIE bet 27.0 1.9E+02 0.004 22.3 5.3 50 415-475 8-59 (65)
190 PRK13509 transcriptional repre 26.9 1.3E+02 0.0029 29.3 5.7 53 411-472 4-57 (251)
191 PRK10906 DNA-binding transcrip 26.9 1.1E+02 0.0024 30.0 5.1 52 411-471 4-56 (252)
192 TIGR02719 repress_PhaQ poly-be 26.6 1.6E+02 0.0034 26.3 5.5 50 416-468 28-77 (138)
193 TIGR01884 cas_HTH CRISPR locus 26.4 1.5E+02 0.0032 27.9 5.7 46 415-469 146-192 (203)
194 cd00090 HTH_ARSR Arsenical Res 26.4 2.2E+02 0.0049 20.7 5.9 52 416-476 11-62 (78)
195 TIGR03433 padR_acidobact trans 26.1 73 0.0016 26.4 3.1 51 416-467 8-58 (100)
196 TIGR02050 gshA_cyan_rel unchar 26.1 49 0.0011 33.2 2.4 96 54-151 38-142 (287)
197 cd03431 DNA_Glycosylase_C DNA 26.0 2.6E+02 0.0057 22.7 6.7 29 114-143 73-101 (118)
198 PRK10411 DNA-binding transcrip 24.9 1.4E+02 0.003 29.0 5.4 53 411-472 3-56 (240)
199 PRK09462 fur ferric uptake reg 24.7 1.9E+02 0.0041 25.7 5.8 58 416-477 21-82 (148)
200 PF10771 DUF2582: Protein of u 24.5 77 0.0017 24.4 2.7 54 414-476 10-64 (65)
201 COG1107 Archaea-specific RecJ- 24.1 82 0.0018 34.7 3.7 38 232-271 421-458 (715)
202 cd00248 Mth938-like Mth938-lik 24.0 2E+02 0.0043 24.3 5.5 31 374-404 41-72 (109)
203 PF12802 MarR_2: MarR family; 23.7 1.8E+02 0.0038 21.1 4.6 46 416-470 9-57 (62)
204 cd02782 MopB_CT_1 The MopB_CT_ 23.6 3.4E+02 0.0073 23.1 7.1 55 277-341 22-80 (129)
205 PF03823 Neurokinin_B: Neuroki 23.5 24 0.00051 26.2 -0.3 20 36-55 36-55 (59)
206 cd02790 MopB_CT_Formate-Dh_H F 22.6 3.3E+02 0.0072 22.4 6.7 73 259-341 5-82 (116)
207 COG0735 Fur Fe2+/Zn2+ uptake r 22.6 2E+02 0.0044 25.6 5.5 59 416-478 25-86 (145)
208 PLN02594 phosphatidate cytidyl 22.1 3.9E+02 0.0085 27.6 8.0 87 369-463 250-339 (342)
209 PF10074 DUF2285: Uncharacteri 22.0 2.4E+02 0.0052 23.9 5.5 88 365-462 4-93 (106)
210 cd00092 HTH_CRP helix_turn_hel 21.2 1.8E+02 0.0038 21.4 4.2 36 424-468 24-59 (67)
211 COG2512 Predicted membrane-ass 20.9 1.4E+02 0.0031 29.5 4.5 57 412-477 195-253 (258)
212 PF08784 RPA_C: Replication pr 20.9 2.5E+02 0.0055 23.0 5.5 47 414-469 49-100 (102)
213 KOG4432 Uncharacterized NUDIX 20.6 1.6E+02 0.0034 29.7 4.6 107 6-122 232-342 (405)
214 TIGR03882 cyclo_dehyd_2 bacter 20.4 2.4E+02 0.0053 26.4 5.8 44 415-466 33-76 (193)
215 PF01047 MarR: MarR family; I 20.4 1.8E+02 0.0039 20.9 4.0 40 423-471 15-54 (59)
216 PF01325 Fe_dep_repress: Iron 20.1 3.8E+02 0.0082 20.0 6.4 49 414-471 10-59 (60)
No 1
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.94 E-value=5.7e-26 Score=229.28 Aligned_cols=179 Identities=18% Similarity=0.232 Sum_probs=138.7
Q ss_pred CeEEEcCCCCChHHHHHHHHHHhC-CCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCCCc
Q 011237 231 EALIVDPGCRSEFHEELLKVVASL-PRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGY 309 (490)
Q Consensus 231 ~~iLIDtG~~~~~~~~L~~~~~~~-~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~~ 309 (490)
.+++||||......+ .+++. ..+++|++||+|.||+| |+..|++.+ +++||++..+...+.. ..
T Consensus 99 ~~~vVDP~~a~~vl~----~l~~~g~~L~~ILlTH~H~DH~G-----G~~~L~~~~-ga~V~g~~~~~~~i~~-----~d 163 (329)
T PLN02398 99 TVGVVDPSEAVPVID----ALSRKNRNLTYILNTHHHYDHTG-----GNLELKARY-GAKVIGSAVDKDRIPG-----ID 163 (329)
T ss_pred EEEEEcCCCHHHHHH----HHHhcCCCceEEEECCCCchhhC-----CHHHHHHhc-CCEEEEehHHhhhccC-----Cc
Confidence 489999996544333 33332 34679999999999999 999999886 7999999876655422 24
Q ss_pred eecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCCCEEEEccccCCCCccccccCCCCCHHHHHHHHHHHHcCCCCE-E
Q 011237 310 TSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHA-L 388 (490)
Q Consensus 310 ~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~L~~l~~~~-i 388 (490)
..+.+|+.+.+||.+++++++||||+||++|++++.++||+||++|..+.+.+ +.++..++++||++|.+++.++ |
T Consensus 164 ~~v~dGd~i~lgg~~l~vi~tPGHT~GhI~~~~~~~~vLFtGDtLf~~g~Gr~---feg~~~~~~~SL~rL~~L~~~t~V 240 (329)
T PLN02398 164 IVLKDGDKWMFAGHEVLVMETPGHTRGHISFYFPGSGAIFTGDTLFSLSCGKL---FEGTPEQMLSSLQKIISLPDDTNI 240 (329)
T ss_pred EEeCCCCEEEECCeEEEEEeCCCcCCCCEEEEECCCCEEEECCCcCCCCcCCC---CCCCHHHHHHHHHHHHcCCCCeEE
Confidence 67889999999999999999999999999999998899999999997665543 6789999999999999999886 7
Q ss_pred EcCCCCCCCChHHH--HHHHHHHHHHHHHHHHHHHHcCCCC
Q 011237 389 IPMHGRVNLWPKHM--LCGYLKNRRAREAAILQAIENGVET 427 (490)
Q Consensus 389 lPgHG~~~~~~~~~--i~~~l~~~~~r~~~il~~l~~g~~T 427 (490)
+||||.+..+..-. ++-.-....++.+++.+..+++..|
T Consensus 241 ypGHgyt~~Nl~Fa~~vep~n~~l~~~~~~v~~~r~~~~~t 281 (329)
T PLN02398 241 YCGHEYTLSNSKFALSIEPNNEVLQSYAAHVAHLRSKGLPT 281 (329)
T ss_pred ECCCCChhcchhhHhhhCCChHHHHHHHHHHHHHHHcCCCc
Confidence 89999987664332 2222234455555676666665444
No 2
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.94 E-value=1.8e-25 Score=219.30 Aligned_cols=178 Identities=23% Similarity=0.319 Sum_probs=134.4
Q ss_pred CeEEEcCCCCChHHHHHHHHHHhCC-CceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCCCc
Q 011237 231 EALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGY 309 (490)
Q Consensus 231 ~~iLIDtG~~~~~~~~L~~~~~~~~-~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~~ 309 (490)
+++|||||..... .+.+++.+ .+++|++||.|.||+| |+..+++.++ ++||++..+ . .+...
T Consensus 21 ~~ilID~g~~~~i----~~~l~~~g~~l~~Il~TH~H~DHig-----G~~~l~~~~~-~~V~~~~~~--~-----~~~~~ 83 (248)
T TIGR03413 21 QAAVVDPGEAEPV----LDALEARGLTLTAILLTHHHHDHVG-----GVAELLEAFP-APVYGPAEE--R-----IPGIT 83 (248)
T ss_pred CEEEEcCCChHHH----HHHHHHcCCeeeEEEeCCCCccccC-----CHHHHHHHCC-CeEEecccc--c-----CCCCc
Confidence 5899999975433 33333333 4569999999999999 9999998875 899998754 1 12234
Q ss_pred eecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCCCEEEEccccCCCCccccccCCCCCHHHHHHHHHHHHcCCCCE-E
Q 011237 310 TSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHA-L 388 (490)
Q Consensus 310 ~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~L~~l~~~~-i 388 (490)
..+.+|+.+++|+.+++++++||||+||+++++++.++||+||+++..+.+.+ ..++..+|++||++|++++.++ |
T Consensus 84 ~~v~~g~~~~~g~~~i~v~~tpGHT~g~i~~~~~~~~~lftGDtl~~~g~g~~---~~~~~~~~~~Sl~~l~~l~~~~~i 160 (248)
T TIGR03413 84 HPVKDGDTVTLGGLEFEVLAVPGHTLGHIAYYLPDSPALFCGDTLFSAGCGRL---FEGTPEQMYDSLQRLAALPDDTLV 160 (248)
T ss_pred EEeCCCCEEEECCEEEEEEECCCCCcccEEEEECCCCEEEEcCccccCCcCCC---CCCCHHHHHHHHHHHHcCCCCeEE
Confidence 67889999999999999999999999999999998899999999987665543 5679999999999999999986 7
Q ss_pred EcCCCCCCCChHHH--HHHHHHHHHHHHHHHHHHHHcCCCCH
Q 011237 389 IPMHGRVNLWPKHM--LCGYLKNRRAREAAILQAIENGVETL 428 (490)
Q Consensus 389 lPgHG~~~~~~~~~--i~~~l~~~~~r~~~il~~l~~g~~T~ 428 (490)
+||||.+..+.+-. +.--.....++.+++.+..++|..|+
T Consensus 161 ~pGH~~~~~n~~fa~~~~p~~~~l~~~~~~~~~~~~~~~~t~ 202 (248)
T TIGR03413 161 YCAHEYTLSNLRFALTVEPDNPALQERLKEVEALRAQGQPTL 202 (248)
T ss_pred ECCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHHCCCCCC
Confidence 99999876554321 11111233344445666655654443
No 3
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.93 E-value=8.1e-25 Score=215.49 Aligned_cols=151 Identities=21% Similarity=0.274 Sum_probs=119.5
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCC-CceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCCC
Q 011237 230 GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSLG 308 (490)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~-~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~ 308 (490)
++++|||||... .+.+.+++.+ .+.+|++||.|.||+| |+..|++.+++++||++..+. + ...
T Consensus 23 ~~~vlIDp~~~~----~il~~l~~~g~~l~~Il~TH~H~DH~g-----G~~~l~~~~~~~~V~~~~~~~--~-----~~~ 86 (258)
T PLN02469 23 KDAAVVDPVDPE----KVLQAAHEHGAKIKLVLTTHHHWDHAG-----GNEKIKKLVPGIKVYGGSLDN--V-----KGC 86 (258)
T ss_pred CeEEEECCCChH----HHHHHHHHcCCcccEEEecCCCCcccc-----CHHHHHHHCCCCEEEEechhc--C-----CCC
Confidence 358999999533 3444444433 4669999999999999 999999998899999986431 1 112
Q ss_pred ceecCCCceEEECC-EEEEEEeCCCCCCCCeEEEECC----CCEEEEccccCCCCccccccCCCCCHHHHHHHHHH-HHc
Q 011237 309 YTSVSGSEDICVGG-QRLTVVFSPGHTDGHVALLHAS----TNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYK-FLE 382 (490)
Q Consensus 309 ~~~~~~g~~l~lgg-~~l~vi~tPGHT~g~i~l~~~~----~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~-L~~ 382 (490)
...+.+|+.+.+|+ ..+++++|||||+||+||++++ .++|||||++|..+.+.+ +.++..++++||++ +..
T Consensus 87 ~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtGDtLf~~g~Gr~---~~g~~~~~~~Sl~~~l~~ 163 (258)
T PLN02469 87 THPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFIAGCGKF---FEGTAEQMYQSLCVTLGS 163 (258)
T ss_pred CeEeCCCCEEEECCceEEEEEECCCCCCCCEEEEeccCCCCCCEEEecCcccCCCcCCC---CCCCHHHHHHHHHHHHHc
Confidence 35688999999986 6899999999999999999873 369999999987665543 57899999999985 667
Q ss_pred CCCC-EEEcCCCCCCCCh
Q 011237 383 LSPH-ALIPMHGRVNLWP 399 (490)
Q Consensus 383 l~~~-~ilPgHG~~~~~~ 399 (490)
++.+ .|+||||....+.
T Consensus 164 Lp~~t~vypGH~yt~~nl 181 (258)
T PLN02469 164 LPKPTQVYCGHEYTVKNL 181 (258)
T ss_pred CCCCeEEEcCCCCchhHH
Confidence 8776 5999999986543
No 4
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.93 E-value=6.4e-25 Score=215.75 Aligned_cols=178 Identities=26% Similarity=0.324 Sum_probs=134.2
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCC-CceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCCC
Q 011237 230 GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSLG 308 (490)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~-~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~ 308 (490)
+.++|||||..... .+.+++.+ .+.+|++||.|.||+| |+..+++.+++++||++..... ...
T Consensus 22 ~~~ilIDpg~~~~v----l~~l~~~g~~l~~IllTH~H~DHig-----G~~~l~~~~~~~~V~~~~~~~~-------~~~ 85 (251)
T PRK10241 22 GRCLIVDPGEAEPV----LNAIAENNWQPEAIFLTHHHHDHVG-----GVKELVEKFPQIVVYGPQETQD-------KGT 85 (251)
T ss_pred CcEEEECCCChHHH----HHHHHHcCCccCEEEeCCCCchhhc-----cHHHHHHHCCCCEEEecccccc-------cCC
Confidence 45899999976443 33333333 3469999999999999 9999999998899999764321 112
Q ss_pred ceecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCCCEEEEccccCCCCccccccCCCCCHHHHHHHHHHHHcCCCCE-
Q 011237 309 YTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHA- 387 (490)
Q Consensus 309 ~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~L~~l~~~~- 387 (490)
...+.+|+.+.+|+.+++++++||||+||++++. .+++||||+++..+.+.+ +.++..++++||++|.++++++
T Consensus 86 ~~~v~~g~~i~ig~~~~~vi~tPGHT~ghi~~~~--~~~lFtGDtlf~~g~gr~---f~g~~~~~~~Sl~kl~~l~~~t~ 160 (251)
T PRK10241 86 TQVVKDGETAFVLGHEFSVFATPGHTLGHICYFS--KPYLFCGDTLFSGGCGRL---FEGTASQMYQSLKKINALPDDTL 160 (251)
T ss_pred ceEeCCCCEEEeCCcEEEEEEcCCCCccceeeec--CCcEEEcCeeccCCcCCC---CCCCHHHHHHHHHHHHcCCCCEE
Confidence 4568899999999999999999999999999986 479999999987665543 5789999999999999999997
Q ss_pred EEcCCCCCCCChHHHHH--HHHHHHHHHHHHHHHHHHcCCCCH
Q 011237 388 LIPMHGRVNLWPKHMLC--GYLKNRRAREAAILQAIENGVETL 428 (490)
Q Consensus 388 ilPgHG~~~~~~~~~i~--~~l~~~~~r~~~il~~l~~g~~T~ 428 (490)
|+||||.+..+.+-.+. --.....++.+++.+..++|..|+
T Consensus 161 i~pgH~y~~~n~~fa~~~~p~n~~l~~~~~~~~~~~~~~~~t~ 203 (251)
T PRK10241 161 ICCAHEYTLSNMKFALSILPHDLSINDYYRKVKELRAKNQITL 203 (251)
T ss_pred EECCCCChhhhHHHHHHhCCCCHHHHHHHHHHHHHHHCCCCcC
Confidence 78999998765543321 112234455556666665654443
No 5
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.92 E-value=7.3e-24 Score=221.45 Aligned_cols=211 Identities=14% Similarity=0.178 Sum_probs=151.1
Q ss_pred eecCCceEEEecCCCCCCCcccccE-EEEccCCCCCCCcceEEEecC-CeEEEcCCCCChHHHHHHHHHH---hCCCceE
Q 011237 185 QEYPPGVILVPMQSRTAKPFLTTNL-IVFAPDSVSDDCGNHRFVAQG-EALIVDPGCRSEFHEELLKVVA---SLPRKLI 259 (490)
Q Consensus 185 ~eva~Gv~~i~~~~~~~~p~~~~N~-~~i~~~~~~~~~~~~~~li~g-~~iLIDtG~~~~~~~~L~~~~~---~~~~~~~ 259 (490)
.+|.+||||+.......+-|. .. |- ...|..+|+|++.+ +.+|||||..... +.+.+.++ ...++++
T Consensus 1 ~~i~~~v~~vg~~d~~~~~f~--~~~~~-----~~~g~~~NsyLI~~~~~vLIDtg~~~~~-~~~~~~l~~~~~~~~Id~ 72 (394)
T PRK11921 1 FKINDNVTWVGKIDWELRKFH--GEEYS-----THRGSSYNSYLIKDEKTVLIDTVWQPFA-KEFVENLKKEIDLDKIDY 72 (394)
T ss_pred CeecCCeEEEeeecCCcceec--ceEee-----cCCceEEEEEEEeCCCEEEEeCCCCCcH-HHHHHHHHhhcCcccCCE
Confidence 368999999977655444332 22 22 23466788999964 4899999976432 23333222 2345779
Q ss_pred EEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCC-CCCCceecCCCceEEECCEEEEEEeCCC-CCCCC
Q 011237 260 VFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDD-WSLGYTSVSGSEDICVGGQRLTVVFSPG-HTDGH 337 (490)
Q Consensus 260 IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~-~~~~~~~~~~g~~l~lgg~~l~vi~tPG-HT~g~ 337 (490)
|++||.|+||+| |+..+.+.+|+++|++++.+...+.... .......+++|+.+++|+.+++++++|| |||||
T Consensus 73 IilTH~H~DHig-----gl~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~ 147 (394)
T PRK11921 73 IVANHGEIDHSG-----ALPELMKEIPDTPIYCTKNGAKSLKGHYHQDWNFVVVKTGDRLEIGSNELIFIEAPMLHWPDS 147 (394)
T ss_pred EEeCCCCCchhh-----HHHHHHHHCCCCEEEECHHHHHHHHHHhCCCCceEEeCCCCEEeeCCeEEEEEeCCCCCCCCc
Confidence 999999999999 9999998889999999998776554211 1124567899999999999999999998 99999
Q ss_pred eEEEECCCCEEEEccccCCCCcc--ccccCCCC-----------------CHHHHHHHHHHHH--cCCCCEEEcCCCCCC
Q 011237 338 VALLHASTNSLIVGDHCVGQGSA--VLDITAGG-----------------NMTDYFQSTYKFL--ELSPHALIPMHGRVN 396 (490)
Q Consensus 338 i~l~~~~~~vLftGD~l~~~~~~--~~~~~~~~-----------------~~~~~~~SL~~L~--~l~~~~ilPgHG~~~ 396 (490)
+++|++++++||+||++-..... .++...+. -...+.+.|++|+ ++++++|+||||++.
T Consensus 148 ~~~y~~~~~vLFsgD~fG~~~~~~~~~~d~~~~~~~~~~~~~y~~~i~~p~~~~v~~~l~~l~~~~l~~~~i~p~HG~i~ 227 (394)
T PRK11921 148 MFTYLTGDNILFSNDAFGQHYASELMYNDLVDQGELYQEAIKYYANILTPFSPLVIKKIEEILSLNLPVDMICPSHGVIW 227 (394)
T ss_pred eEEEEcCCCEEEecCcccccccCcccccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEcCCccEE
Confidence 99999999999999986443322 11110000 1123467788888 558999999999986
Q ss_pred CC-hHHHHHHHHH
Q 011237 397 LW-PKHMLCGYLK 408 (490)
Q Consensus 397 ~~-~~~~i~~~l~ 408 (490)
+. ..+.+..|.+
T Consensus 228 ~~~~~~~~~~Y~~ 240 (394)
T PRK11921 228 RDNPLQIVEKYLE 240 (394)
T ss_pred eCCHHHHHHHHHH
Confidence 54 5566677765
No 6
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.91 E-value=7.7e-24 Score=225.58 Aligned_cols=212 Identities=15% Similarity=0.174 Sum_probs=151.3
Q ss_pred eecCCceEEEecCCCCCCCcccccE-EEEccCCCCCCCcceEEEecC-CeEEEcCCCCChHHHHHHHHHH--hCCCceEE
Q 011237 185 QEYPPGVILVPMQSRTAKPFLTTNL-IVFAPDSVSDDCGNHRFVAQG-EALIVDPGCRSEFHEELLKVVA--SLPRKLIV 260 (490)
Q Consensus 185 ~eva~Gv~~i~~~~~~~~p~~~~N~-~~i~~~~~~~~~~~~~~li~g-~~iLIDtG~~~~~~~~L~~~~~--~~~~~~~I 260 (490)
.+|.++|||+.+.....+-|. ++ |-+ ..|...|+|+|.+ +.+|||||......+.+.++.. ...++++|
T Consensus 3 ~~i~~~vy~vg~~d~~~~~F~--~~~~~~-----~~G~t~NsYLI~~~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~I 75 (479)
T PRK05452 3 IHVKNNIHWVGQRDWEVRDFH--GTEYKT-----LRGSSYNSYLIREEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYI 75 (479)
T ss_pred EEecCCeEEEeeecCCccccc--cceeec-----CCCcEEEEEEEECCCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEE
Confidence 579999999987766544442 22 222 2455678898854 5899999965433333333322 23457799
Q ss_pred EecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCC--CCCceecCCCceEEEC-CEEEEEEeCCC-CCCC
Q 011237 261 FVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDW--SLGYTSVSGSEDICVG-GQRLTVVFSPG-HTDG 336 (490)
Q Consensus 261 viTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~--~~~~~~~~~g~~l~lg-g~~l~vi~tPG-HT~g 336 (490)
++||.|.||+| |+..+.+.+|+++|++++.+...+..... ...+..+++|+.+++| +.+++++++|| ||||
T Consensus 76 ilTH~H~DH~G-----gl~~Ll~~~p~a~V~~s~~~~~~l~~~~~~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pg 150 (479)
T PRK05452 76 VINHAEEDHAG-----ALTELMAQIPDTPIYCTANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPD 150 (479)
T ss_pred EeCCCCcchhc-----hHHHHHHHCCCCEEEECHHHHHHHHHhhcCCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCC
Confidence 99999999999 99999988899999999988776644211 2245778999999999 47999999997 9999
Q ss_pred CeEEEECCCCEEEEccccCCCCcc--ccccCC----------------CCCH-HHHHHHHHHHH--cCCCCEEEcCCCCC
Q 011237 337 HVALLHASTNSLIVGDHCVGQGSA--VLDITA----------------GGNM-TDYFQSTYKFL--ELSPHALIPMHGRV 395 (490)
Q Consensus 337 ~i~l~~~~~~vLftGD~l~~~~~~--~~~~~~----------------~~~~-~~~~~SL~~L~--~l~~~~ilPgHG~~ 395 (490)
++++|++++++|||||++-..+.. .++... .++. ..++++|++++ ++++++|+||||++
T Consensus 151 s~~~y~~~~~vLFsgD~fG~~~~~~~~f~d~~~~~~~~~~~~~y~~~i~~p~~~~v~~~l~~~~~l~l~~~~i~p~HG~i 230 (479)
T PRK05452 151 SMMTYLTGDAVLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNLPVDMIATSHGVV 230 (479)
T ss_pred ceEEEEcCCCEEEecccccCCCCchhhhcccCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCCEEECCCCce
Confidence 999999999999999986433322 111000 0111 23467889998 45899999999998
Q ss_pred CC-ChHHHHHHHHH
Q 011237 396 NL-WPKHMLCGYLK 408 (490)
Q Consensus 396 ~~-~~~~~i~~~l~ 408 (490)
.. +..+.+..|++
T Consensus 231 ~r~~~~~~l~~Y~~ 244 (479)
T PRK05452 231 WRDNPTQIVELYLK 244 (479)
T ss_pred EeCCHHHHHHHHHH
Confidence 54 35566677765
No 7
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.91 E-value=1.5e-23 Score=205.26 Aligned_cols=149 Identities=25% Similarity=0.387 Sum_probs=118.8
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCC-CceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCCC
Q 011237 230 GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSLG 308 (490)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~-~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~ 308 (490)
++++|||||.... ..+.+.+++.+ .+.+|++||.|.||+| |+..|++.+++++++++.... ...
T Consensus 36 ~~avlIDP~~~~~--~~~l~~l~~~g~~i~~Il~TH~H~DHig-----g~~~l~~~~~~a~v~~~~~~~--------~~~ 100 (251)
T PLN02962 36 KPALLIDPVDKTV--DRDLSLVKELGLKLIYAMNTHVHADHVT-----GTGLLKTKLPGVKSIISKASG--------SKA 100 (251)
T ss_pred CEEEEECCCCCcH--HHHHHHHHHCCCeeEEEEcCCCCchhHH-----HHHHHHHHCCCCeEEeccccC--------CCC
Confidence 3589999985322 23344554444 4569999999999999 999999888899999875321 112
Q ss_pred ceecCCCceEEECCEEEEEEeCCCCCCCCeEEEECC------CCEEEEccccCCCCccccccCCCCCHHHHHHHHH-HHH
Q 011237 309 YTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAS------TNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTY-KFL 381 (490)
Q Consensus 309 ~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~------~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~-~L~ 381 (490)
...+.+|+.+.+|+.++++++|||||+||+||++++ .+++|+||++|..+....+. +.++..++++||+ +|.
T Consensus 101 d~~l~~g~~i~~g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lftGD~Lf~~g~Gr~d~-~~g~~~~l~~Sl~~~l~ 179 (251)
T PLN02962 101 DLFVEPGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIRGCGRTDF-QGGSSDQLYKSVHSQIF 179 (251)
T ss_pred CEEeCCCCEEEECCEEEEEEECCCCCcCcEEEEeccCCCCCccceEEECCeeccCCcCCCCC-CCCCHHHHHHHHHHHHH
Confidence 345889999999999999999999999999999853 36999999999877666553 5789999999996 788
Q ss_pred cCCCCE-EEcCCCC
Q 011237 382 ELSPHA-LIPMHGR 394 (490)
Q Consensus 382 ~l~~~~-ilPgHG~ 394 (490)
.++.++ |+||||.
T Consensus 180 ~L~~~~~i~PGHg~ 193 (251)
T PLN02962 180 TLPKDTLIYPAHDY 193 (251)
T ss_pred cCCCCeEEECCCCC
Confidence 998886 8999995
No 8
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=99.90 E-value=2e-23 Score=201.53 Aligned_cols=173 Identities=24% Similarity=0.358 Sum_probs=129.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCC-CCEEEeChhhHHhhccCCCCCCce
Q 011237 232 ALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNP-DAILLAHENTMRRIGKDDWSLGYT 310 (490)
Q Consensus 232 ~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p-~a~I~~~~~~~~~l~~~~~~~~~~ 310 (490)
+.++|+.....+...+.+.......+.+|++||+|+||+| |+..|.+..+ +++++++.. +++. .-..
T Consensus 27 a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsG-----Gn~~i~~~~~~~~~v~g~~~--~r~~-----~i~~ 94 (265)
T KOG0813|consen 27 ADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSG-----GNEDIKREIPYDIKVIGGAD--DRIP-----GITR 94 (265)
T ss_pred eeeecCcchHHHHHHHHhhhhccCceeEEEeccccccccC-----cHHHHHhhccCCcEEecCCh--hcCc-----cccc
Confidence 6688888776655555444444556679999999999999 9999999855 899999851 1111 1123
Q ss_pred ecCCCceEEECCEEEEEEeCCCCCCCCeEEEECC---CCEEEEccccCCCCccccccCCCCCHHHHHHHHHHHHcCCCC-
Q 011237 311 SVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAS---TNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPH- 386 (490)
Q Consensus 311 ~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~---~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~L~~l~~~- 386 (490)
.+++|+.+.++|.+|++++|||||.||+|||+.+ .+.+|+||++|..++..+ +.+...++..|+..|..++.+
T Consensus 95 ~~~~~e~~~~~g~~v~~l~TPgHT~~hi~~~~~~~~~e~~iFtGDtlf~~GcG~~---FEgt~~~M~~sl~~l~~L~~~t 171 (265)
T KOG0813|consen 95 GLKDGETVTVGGLEVRCLHTPGHTAGHICYYVTESTGERAIFTGDTLFGAGCGRF---FEGTAEQMDSSLNELIALPDDT 171 (265)
T ss_pred cCCCCcEEEECCEEEEEEeCCCccCCcEEEEeecCCCCCeEEeCCceeecCccch---hcCCHHHHHHhHHHhhcCCCCc
Confidence 4889999999999999999999999999999986 899999999998877643 566777777888889999999
Q ss_pred EEEcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 011237 387 ALIPMHGRVNLWPKHMLCGYLKNRRAREAAILQAI 421 (490)
Q Consensus 387 ~ilPgHG~~~~~~~~~i~~~l~~~~~r~~~il~~l 421 (490)
.|+|||+.... ......|++....++++.++.+
T Consensus 172 ~iypGHeYt~~--n~kf~~~ve~~n~~~q~~l~~~ 204 (265)
T KOG0813|consen 172 RIYPGHEYTKS--NLKFARYVEPRNEVEQEKLDWL 204 (265)
T ss_pred eEccCcccccc--cceeeeecccccHHHHHHHHHH
Confidence 59999994322 2234455544444444444444
No 9
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.85 E-value=5e-20 Score=178.31 Aligned_cols=158 Identities=25% Similarity=0.425 Sum_probs=118.4
Q ss_pred CeEEEcCCCCChHHHHHHHHHHhCC-CceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCC-----
Q 011237 231 EALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDD----- 304 (490)
Q Consensus 231 ~~iLIDtG~~~~~~~~L~~~~~~~~-~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~----- 304 (490)
..+|||||........+.+.+...+ ++++|++||.|.||+| |+..+++..+.++++.++..........
T Consensus 36 ~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~g-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (252)
T COG0491 36 GAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIG-----GAAVLKEAFGAAPVIAPAEVPLLLREEILRKAG 110 (252)
T ss_pred ceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhc-----cHHHHHhhcCCceEEccchhhhhhhcccccccc
Confidence 5899999998753344555544444 5779999999999999 9999988754477755544333222110
Q ss_pred -------CC--CCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCCCEEEEccccCCCC--ccccccCCCCCHHHH
Q 011237 305 -------WS--LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQG--SAVLDITAGGNMTDY 373 (490)
Q Consensus 305 -------~~--~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~--~~~~~~~~~~~~~~~ 373 (490)
.+ .....+.+++.+.+++..+++++|||||+||++++++++++||+||+++... ...... ...+...+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tpGHT~g~~~~~~~~~~~l~~gD~~~~~~~~~~~~~~-~~~~~~~~ 189 (252)
T COG0491 111 VTAEAYAAPGASPLRALEDGDELDLGGLELEVLHTPGHTPGHIVFLLEDGGVLFTGDTLFAGDTGVGRLDL-PGGDAAQL 189 (252)
T ss_pred cccccCCCCccccceecCCCCEEEecCeEEEEEECCCCCCCeEEEEECCccEEEecceeccCCCCCccccC-CCCCHHHH
Confidence 01 1234566899999999999999999999999999999888999999998765 111211 22238999
Q ss_pred HHHHHHHHcCCCC--EEEcCCCC
Q 011237 374 FQSTYKFLELSPH--ALIPMHGR 394 (490)
Q Consensus 374 ~~SL~~L~~l~~~--~ilPgHG~ 394 (490)
++|++++..+..+ .++||||.
T Consensus 190 ~~s~~~~~~~~~~~~~v~pgHg~ 212 (252)
T COG0491 190 LASLRRLLLLLLPDTLVLPGHGP 212 (252)
T ss_pred HHHHHHHHhccCCCCEEECCCCc
Confidence 9999999988776 89999998
No 10
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.85 E-value=1.1e-19 Score=184.52 Aligned_cols=213 Identities=15% Similarity=0.178 Sum_probs=156.2
Q ss_pred CCceecCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEecC-CeEEEcCCCCChHHHHHHHHHH---hCCCc
Q 011237 182 LSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQG-EALIVDPGCRSEFHEELLKVVA---SLPRK 257 (490)
Q Consensus 182 ~~~~eva~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~g-~~iLIDtG~~~~~~~~L~~~~~---~~~~~ 257 (490)
+...++++++|+++......+-| .+. -....|...|+|+|.+ +.+||||+-..-. +.+.+.+. ++..+
T Consensus 2 ~~~~~i~~~i~~~~~~dw~~~~f--~~~-----~~~~~GttyNSYLI~~~k~aLID~~~~~~~-~~~l~~l~~~id~k~i 73 (388)
T COG0426 2 VQVLKIADNIYWVGVRDWDRRRF--EIE-----YETPRGTTYNSYLIVGDKTALIDTVGEKFF-DEYLENLSKYIDPKEI 73 (388)
T ss_pred CccccccCceEEecccchhheee--eee-----eccCCCceeeeEEEeCCcEEEECCCCcchH-HHHHHHHHhhcChhcC
Confidence 45678999999996654332222 122 1223466788888865 4899999976533 33333333 34467
Q ss_pred eEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCC-CceecCCCceEEECCEEEEEEeCCC-CCC
Q 011237 258 LIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSL-GYTSVSGSEDICVGGQRLTVVFSPG-HTD 335 (490)
Q Consensus 258 ~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~lgg~~l~vi~tPG-HT~ 335 (490)
++||++|..+||+| ++..+.+.+|+++|+++....+.+....... .+..++.|+++++||.+++++.+|= |+|
T Consensus 74 DYIi~~H~ePDhsg-----~l~~ll~~~p~a~ii~s~~~~~~L~~~~~~~~~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWP 148 (388)
T COG0426 74 DYIIVNHTEPDHSG-----SLPELLELAPNAKIICSKLAARFLKGFYHDPEWFKIVKTGDTLDLGGHTLKFIPAPFLHWP 148 (388)
T ss_pred eEEEECCCCcchhh-----hHHHHHHhCCCCEEEeeHHHHHHHHHhcCCccceeecCCCCEeccCCcEEEEEeCCCCCCC
Confidence 89999999999999 9999999999999999999888876532111 1678999999999999999998885 999
Q ss_pred CCeEEEECCCCEEEEccccCCCCccccccCCCCCHHH-------------------HHHHHHHHHcCCCCEEEcCCCCCC
Q 011237 336 GHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTD-------------------YFQSTYKFLELSPHALIPMHGRVN 396 (490)
Q Consensus 336 g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~-------------------~~~SL~~L~~l~~~~ilPgHG~~~ 396 (490)
|+++.|.+++++|||+|++-...+.. ..++.++.. -+..++++..++.+.|+||||++.
T Consensus 149 d~m~TYd~~~kILFS~D~fG~h~~~~--~~fded~~~~~~~~~~Y~~~lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~ 226 (388)
T COG0426 149 DTMFTYDPEDKILFSCDAFGAHVCDD--YRFDEDIEELLPDMRKYYANLMAPNARLVLWALKKIKLLKIEMIAPSHGPIW 226 (388)
T ss_pred CceeEeecCCcEEEccccccccccch--hccccCHHHHHHHHHHHHHHhhcccHHHHHHHHhhhcccCccEEEcCCCcee
Confidence 99999999999999999864443332 113333322 234556677778999999999998
Q ss_pred CC-hHHHHHHHHHH
Q 011237 397 LW-PKHMLCGYLKN 409 (490)
Q Consensus 397 ~~-~~~~i~~~l~~ 409 (490)
.. +.+.+..|.+.
T Consensus 227 ~~~~~~i~~~Y~~W 240 (388)
T COG0426 227 RGNPKEIVEAYRDW 240 (388)
T ss_pred eCCHHHHHHHHHHH
Confidence 64 67777777763
No 11
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.81 E-value=2.2e-18 Score=159.16 Aligned_cols=163 Identities=26% Similarity=0.402 Sum_probs=125.3
Q ss_pred cceEEEec--CCeEEEcCCCCChHHHHHHHHHHh--CCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhH
Q 011237 222 GNHRFVAQ--GEALIVDPGCRSEFHEELLKVVAS--LPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTM 297 (490)
Q Consensus 222 ~~~~~li~--g~~iLIDtG~~~~~~~~L~~~~~~--~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~ 297 (490)
.+++++|+ ++.+|||||..... +.+.. +.. ..++++|++||.|.||++ |+..+.+. +++++|+++...
T Consensus 5 ~~~~~li~~~~~~iliD~g~~~~~-~~~~~-l~~~~~~~i~~i~iTH~H~DH~~-----g~~~~~~~-~~~~i~~~~~~~ 76 (183)
T smart00849 5 GVNSYLVEGDGGAILIDTGPGEAE-DLLAE-LKKLGPKDIDAIILTHGHPDHIG-----GLPELLEA-PGAPVYAPEGTA 76 (183)
T ss_pred ceeEEEEEeCCceEEEeCCCChhH-HHHHH-HHHcCchhhcEEEecccCcchhc-----cHHHHHhC-CCCcEEEchhhh
Confidence 34555552 45899999966432 22111 222 346679999999999999 99888776 689999999888
Q ss_pred HhhccCC-----------CCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCCCEEEEccccCCCCc-cccccC
Q 011237 298 RRIGKDD-----------WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGS-AVLDIT 365 (490)
Q Consensus 298 ~~l~~~~-----------~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~-~~~~~~ 365 (490)
..+.... .......+..++.+.+++.+++++++|||+++++++++++.+++|+||+.+.... .....+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~vl~~gD~~~~~~~~~~~~~~ 156 (183)
T smart00849 77 ELLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPGSIVLYLPEGKILFTGDLLFSGGIGRTDDDG 156 (183)
T ss_pred HHHhccchhccccCcCCCCCccceecCCCCEEEeCCceEEEEECCCCCCCcEEEEECCCCEEEECCeeeccCCCCcccCC
Confidence 7775321 1223556889999999999999999999999999999999999999999875542 223333
Q ss_pred CCCCHHHHHHHHHHHHcCCCCEEEcCC
Q 011237 366 AGGNMTDYFQSTYKFLELSPHALIPMH 392 (490)
Q Consensus 366 ~~~~~~~~~~SL~~L~~l~~~~ilPgH 392 (490)
.......+.++++++.+...++++|||
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~i~~~H 183 (183)
T smart00849 157 GDASASDSLESLLKLLALDPELVVPGH 183 (183)
T ss_pred CCccHHHHHHHHHHhhcCCccEeecCC
Confidence 456788999999999999999999999
No 12
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.79 E-value=7e-19 Score=162.27 Aligned_cols=166 Identities=22% Similarity=0.342 Sum_probs=118.8
Q ss_pred cceEEEec--CCeEEEcCCCCChHHHHH--HHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhH
Q 011237 222 GNHRFVAQ--GEALIVDPGCRSEFHEEL--LKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTM 297 (490)
Q Consensus 222 ~~~~~li~--g~~iLIDtG~~~~~~~~L--~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~ 297 (490)
++|+|+|+ ++.+|||||......... ........++.+||+||.|.||+| |+..|.+.++...+.......
T Consensus 5 ~~n~~li~~~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~g-----gl~~~~~~~~~~~~~~~~~~~ 79 (194)
T PF00753_consen 5 GSNSYLIEGGDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIG-----GLPELLEAGPVVIIYSSADAA 79 (194)
T ss_dssp EEEEEEEEETTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHT-----THHHHHHHTTEEEEEEHHHHH
T ss_pred eEEEEEEEECCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccc-----cccccccccceeeeecccccc
Confidence 34445442 458999999988754443 234445567789999999999999 999999987655555544332
Q ss_pred HhhccCC-----------CCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCCCEEEEccccCCCCcccccc--
Q 011237 298 RRIGKDD-----------WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDI-- 364 (490)
Q Consensus 298 ~~l~~~~-----------~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~-- 364 (490)
....... ................++..+.+...+||++++++++.+++++||+||+++.........
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~~ 159 (194)
T PF00753_consen 80 KAIRPPDRDSASRRGPAVPPPPIIDEDEDDLEIGGDRILFIIPGPGHGSDSLIIYLPGGKVLFTGDLLFSNEHPNPDPDL 159 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHESEEEEEETTTEEEEETTEEEEEEESSSSSTTEEEEEETTTTEEEEETTSCTTTSSSSSTSH
T ss_pred ccccccccccccccccccccccceeeecccccccccccccceeccccCCcceEEEeCCCcEEEeeeEeccCCcccccccc
Confidence 2211100 001112234455566677888888999999999999999999999999997655443322
Q ss_pred -------CCCCCHHHHHHHHHHHHcCCCCEEEcCC
Q 011237 365 -------TAGGNMTDYFQSTYKFLELSPHALIPMH 392 (490)
Q Consensus 365 -------~~~~~~~~~~~SL~~L~~l~~~~ilPgH 392 (490)
....+...+.++++++.++++++++|||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~gH 194 (194)
T PF00753_consen 160 PLRGADVRYGSNWEESIEALRRLEALDPEVIIPGH 194 (194)
T ss_dssp TTTTHTTSHTTHHHHHHHHHHHHHTSTTSEEEESS
T ss_pred ccccccccCcHHHHHHHHHHHHHHCCCCCEEEeCc
Confidence 2245778999999999999999999999
No 13
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=99.71 E-value=2.5e-16 Score=142.45 Aligned_cols=159 Identities=21% Similarity=0.182 Sum_probs=102.4
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCCCc
Q 011237 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGY 309 (490)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~~ 309 (490)
++.|+|||-+-.. ...+.+..++.+.+|++||. ||+- .+..+++.+ +++|++|..+++.+.- ...
T Consensus 32 ~GnilIDP~~ls~---~~~~~l~a~ggv~~IvLTn~--dHvR-----~A~~ya~~~-~a~i~~p~~d~~~~p~----~~D 96 (199)
T PF14597_consen 32 EGNILIDPPPLSA---HDWKHLDALGGVAWIVLTNR--DHVR-----AAEDYAEQT-GAKIYGPAADAAQFPL----ACD 96 (199)
T ss_dssp T--EEES-----H---HHHHHHHHTT--SEEE-SSG--GG-T-----THHHHHHHS---EEEEEGGGCCC-SS------S
T ss_pred CCCEEecCccccH---HHHHHHHhcCCceEEEEeCC--hhHh-----HHHHHHHHh-CCeeeccHHHHhhCCC----CCc
Confidence 5689999987654 45667778899999999985 9999 899999886 8999999987654311 234
Q ss_pred eecCCCceEEECCEEEEEEeCCC-CCCCCeEEEECCCCEEEEccccCCCCccccccC---CCCCHHHHHHHHHHHHcC-C
Q 011237 310 TSVSGSEDICVGGQRLTVVFSPG-HTDGHVALLHASTNSLIVGDHCVGQGSAVLDIT---AGGNMTDYFQSTYKFLEL-S 384 (490)
Q Consensus 310 ~~~~~g~~l~lgg~~l~vi~tPG-HT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~---~~~~~~~~~~SL~~L~~l-~ 384 (490)
..+.+|+.+ ++| +++++.|| ||+|.+.+++++ ++||+||++.......+... ...|..+..+|+.||.++ +
T Consensus 97 ~~l~dge~i-~~g--~~vi~l~G~ktpGE~ALlled-~vLi~GDl~~~~~~g~l~lLpd~k~~d~~~a~~sl~RLa~~~~ 172 (199)
T PF14597_consen 97 RWLADGEEI-VPG--LWVIHLPGSKTPGELALLLED-RVLITGDLLRSHPAGSLSLLPDEKLYDPTEARASLRRLAAYPD 172 (199)
T ss_dssp EEE-TT-BS-STT--EEEEEE-SSSSTTEEEEEETT-TEEEESSSEEBSSTTS-EE--GGG-S-HHHHHHHHHHHHT-TT
T ss_pred cccccCCCc-cCc--eEEEEcCCCCCCceeEEEecc-ceEEecceeeecCCCCeEECChHHcCCHHHHHHHHHHHhcccc
Confidence 578888855 577 89999999 999999999975 79999998865543333322 346899999999999999 6
Q ss_pred CCEEEcCCCCCC-CChHHHHHHHH
Q 011237 385 PHALIPMHGRVN-LWPKHMLCGYL 407 (490)
Q Consensus 385 ~~~ilPgHG~~~-~~~~~~i~~~l 407 (490)
++.+++|||.++ .+.++++.++.
T Consensus 173 fe~lLvGdGwpi~~~~r~rl~~L~ 196 (199)
T PF14597_consen 173 FEWLLVGDGWPIFRDARQRLRELV 196 (199)
T ss_dssp --EEEESBB--B-S-HHHHHHHHH
T ss_pred ccEEeecCCchhhhhHHHHHHHHH
Confidence 999999999975 44444444443
No 14
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=99.66 E-value=4.2e-16 Score=139.52 Aligned_cols=158 Identities=22% Similarity=0.355 Sum_probs=122.3
Q ss_pred cceEEEe----cCCeEEEcCCCCChHHHHHHHHHHhCC-CceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhh
Q 011237 222 GNHRFVA----QGEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENT 296 (490)
Q Consensus 222 ~~~~~li----~g~~iLIDtG~~~~~~~~L~~~~~~~~-~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~ 296 (490)
++..|++ .+.++||||-..... .-.+++++++ +..+-++||.|.||+- |...++...|+++-+.+...
T Consensus 20 sTytYll~d~~~~~AviIDPV~et~~--RD~qlikdLgl~LiYa~NTH~HADHiT-----Gtg~Lkt~~pg~kSVis~~S 92 (237)
T KOG0814|consen 20 STYTYLLGDHKTGKAVIIDPVLETVS--RDAQLIKDLGLDLIYALNTHVHADHIT-----GTGLLKTLLPGCKSVISSAS 92 (237)
T ss_pred ceEEEEeeeCCCCceEEecchhhccc--chHHHHHhcCceeeeeecceeeccccc-----ccchHHHhcccHHHHhhhcc
Confidence 3455555 245999999765431 1234555665 3459999999999999 99999998888865554322
Q ss_pred HHhhccCCCCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCCCEEEEccccCCCCccccccCCCCCHHHHHHH
Q 011237 297 MRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQS 376 (490)
Q Consensus 297 ~~~l~~~~~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~S 376 (490)
- ......+++|+.+++|+..+++..|||||+|++.+...+.+..|+||+++-.++...+. ..+......+|
T Consensus 93 G--------akAD~~l~~Gd~i~~G~~~le~ratPGHT~GC~TyV~~d~~~aFTGDalLIRgCGRTDF-QqG~~~~Lyes 163 (237)
T KOG0814|consen 93 G--------AKADLHLEDGDIIEIGGLKLEVRATPGHTNGCVTYVEHDLRMAFTGDALLIRGCGRTDF-QQGCPASLYES 163 (237)
T ss_pred c--------cccccccCCCCEEEEccEEEEEecCCCCCCceEEEEecCcceeeecceeEEeccCccch-hccChHHHHHH
Confidence 1 12345688999999999999999999999999999999999999999998777776654 56778888888
Q ss_pred HH-HHHcCCCCE-EEcCCCCC
Q 011237 377 TY-KFLELSPHA-LIPMHGRV 395 (490)
Q Consensus 377 L~-~L~~l~~~~-ilPgHG~~ 395 (490)
+. +|-.++-++ |+|+|..-
T Consensus 164 VH~kIFTLP~d~~iYpaHdY~ 184 (237)
T KOG0814|consen 164 VHSKIFTLPEDYLIYPAHDYK 184 (237)
T ss_pred HhHHheeCCCceEEeeccccC
Confidence 76 899999887 89999763
No 15
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.43 E-value=2.6e-12 Score=131.10 Aligned_cols=227 Identities=14% Similarity=0.218 Sum_probs=156.3
Q ss_pred CCCceecCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHH-HhCCCc--
Q 011237 181 TLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVV-ASLPRK-- 257 (490)
Q Consensus 181 ~~~~~eva~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~-~~~~~~-- 257 (490)
....-+|.||+|.+ +++..+|+.+++++ .++|+|||-...+..++-.++. +..+++
T Consensus 107 ~~GLfkVtd~iYQV-------RG~DisNITfveGd--------------tg~IViDpL~t~~tA~aAldl~~~~~g~rPV 165 (655)
T COG2015 107 KHGLFKVTDGIYQV-------RGFDISNITFVEGD--------------TGWIVIDPLVTPETAKAALDLYNQHRGQRPV 165 (655)
T ss_pred hcCeeeeccceeEe-------ecccccceEEEcCC--------------cceEEEcccCCcHHHHHHHHHHHHhcCCCCe
Confidence 44557899999999 67777899999886 4699999998887655444443 345544
Q ss_pred eEEEecCCCccccCchhhccHHHHHHh----CCCCEEEeChhhHHhhccCC------------------CC---------
Q 011237 258 LIVFVTHHHRDHVDGEFIRGLSIIQKC----NPDAILLAHENTMRRIGKDD------------------WS--------- 306 (490)
Q Consensus 258 ~~IviTH~H~DH~G~a~~~G~~~l~~~----~p~a~I~~~~~~~~~l~~~~------------------~~--------- 306 (490)
..||.||+|.||+| |+.-+... ...++|+++..-++..-..+ .+
T Consensus 166 ~aVIYtHsH~DHfG-----GVkGiv~eadV~sGkV~iiAP~GFme~avaENvlAGnaM~RRa~YqyG~~Lp~g~~G~V~~ 240 (655)
T COG2015 166 VAVIYTHSHSDHFG-----GVKGIVSEADVKSGKVQIIAPAGFMEEAVAENVLAGNAMSRRAQYQYGTLLPPGAQGQVGC 240 (655)
T ss_pred EEEEeecccccccC-----CeeeccCHHHcccCceeEecchhHHHHHHHHhhhhhhhHhhhhhhhhccccCCCccCcccc
Confidence 48999999999999 88766432 23578898876544321100 00
Q ss_pred --------------CCc-eecCCCceEEECCEEEEEEeCCC-CCCCCeEEEECCCCEEEEccccCCCCcccccc--CCCC
Q 011237 307 --------------LGY-TSVSGSEDICVGGQRLTVVFSPG-HTDGHVALLHASTNSLIVGDHCVGQGSAVLDI--TAGG 368 (490)
Q Consensus 307 --------------~~~-~~~~~g~~l~lgg~~l~vi~tPG-HT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~--~~~~ 368 (490)
.+. ...+.|+++.++|.++++..||| .+|..+-+|.|..++|.........-...+.. ....
T Consensus 241 giGk~la~G~vsLiaPT~~I~~~gE~~~iDGV~~~Fq~tPgtEaPAEM~~y~P~~kaL~mAEnat~~lHNlytlRGa~vR 320 (655)
T COG2015 241 GIGKTLATGEVSLIAPTKIIEETGETLTIDGVEFEFQMTPGTEAPAEMHFYFPRLKALCMAENATHTLHNLYTLRGAEVR 320 (655)
T ss_pred ccccccccCceeeecceEEeeccCceEEEeceEEEEeeCCCCCCcHHHhhhhhHHHHHHHHhhccccceeeeecccceec
Confidence 011 23467899999999999999999 79999999999999888777653222111111 0112
Q ss_pred CHHHHHHHHH---HHHcCCCCEEEcCCCCCCCChHHHHHHHHHHHHHHH----HHHHHHHHcCCCCHHHHHHHh
Q 011237 369 NMTDYFQSTY---KFLELSPHALIPMHGRVNLWPKHMLCGYLKNRRARE----AAILQAIENGVETLFDIVANV 435 (490)
Q Consensus 369 ~~~~~~~SL~---~L~~l~~~~ilPgHG~~~~~~~~~i~~~l~~~~~r~----~~il~~l~~g~~T~~ei~~~~ 435 (490)
|..+|-+-|. .+-.-+.++++..|+.|. +....|.+++..+++.. .+.++.+.+| .|..||...+
T Consensus 321 D~~~Ws~ylneal~~fg~~adVmfa~H~WP~-wG~~~I~e~L~kqRDmy~yiHDQTLrL~NqG-~T~~eI~~~~ 392 (655)
T COG2015 321 DAKAWSKYLNEALDMFGDDADVMFASHTWPR-WGNAHINEFLGKQRDMYKYIHDQTLRLANQG-YTGNEIADMI 392 (655)
T ss_pred chHHHHHHHHHHHHHhcccccEEEeecCCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccHHHHHHHh
Confidence 4444444443 344457889999999985 44677888887776654 4677778775 5999998865
No 16
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.41 E-value=2.5e-12 Score=135.85 Aligned_cols=132 Identities=14% Similarity=0.181 Sum_probs=96.3
Q ss_pred CCcceEEEe--cCCeEEEcCCCCChHHHH---------HHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCC
Q 011237 220 DCGNHRFVA--QGEALIVDPGCRSEFHEE---------LLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDA 288 (490)
Q Consensus 220 ~~~~~~~li--~g~~iLIDtG~~~~~~~~---------L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a 288 (490)
..++|||++ .+..+|||+|........ +..+.....++++||+||.|.||+| |+..+....+.+
T Consensus 11 eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHig-----gl~~l~~~~~~~ 85 (422)
T TIGR00649 11 EIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIG-----AVPYLFHTVGFP 85 (422)
T ss_pred ccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhC-----cHHHHHHhCCCC
Confidence 345666666 345899999975321100 1112223446679999999999999 999988776557
Q ss_pred EEEeChhhHHhhcc----CC--CCCCceecCCCceEEEC-CEEEEEEeCCCCCCCCeEEEE--CCCCEEEEccccCC
Q 011237 289 ILLAHENTMRRIGK----DD--WSLGYTSVSGSEDICVG-GQRLTVVFSPGHTDGHVALLH--ASTNSLIVGDHCVG 356 (490)
Q Consensus 289 ~I~~~~~~~~~l~~----~~--~~~~~~~~~~g~~l~lg-g~~l~vi~tPGHT~g~i~l~~--~~~~vLftGD~l~~ 356 (490)
+||+++.+...+.. .. .......++.++.+++| +.+++++++++|++|++++.+ ++.+++||||..+.
T Consensus 86 ~Vy~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~~~~~ivytGD~~~~ 162 (422)
T TIGR00649 86 PIYGTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHTPLGYIVYTGDFKFD 162 (422)
T ss_pred eEEeCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEeCCcEEEECCCcCCC
Confidence 99999988766542 11 12245678899999996 599999999999999999887 45679999999764
No 17
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.20 E-value=1.3e-10 Score=112.33 Aligned_cols=163 Identities=15% Similarity=0.232 Sum_probs=100.8
Q ss_pred ceEEEec--CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhh
Q 011237 223 NHRFVAQ--GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRI 300 (490)
Q Consensus 223 ~~~~li~--g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l 300 (490)
+++|+++ +..+||||+....-...+. .... ++++|++||.|.||++ +...+... ++++++++......+
T Consensus 8 ~s~~li~~~~~~iLiDP~~~~~~~~~~~--~~~~-~id~vliTH~H~DH~~-----~~~~~~~~-~~~~v~~~~~~~~~~ 78 (228)
T PRK00685 8 HSAFLIETGGKKILIDPFITGNPLADLK--PEDV-KVDYILLTHGHGDHLG-----DTVEIAKR-TGATVIANAELANYL 78 (228)
T ss_pred ceEEEEEECCEEEEECCCCCCCCCCCCC--hhcC-cccEEEeCCCCccccc-----cHHHHHHh-CCCEEEEeHHHHHHH
Confidence 3455553 3489999865321000111 1122 5779999999999999 88776553 578999998887776
Q ss_pred ccCCCCCCceecCCCceEEECCEEEEEEeCCCCCCC------------CeEEEE--CCCCEEEEccccCCCC--------
Q 011237 301 GKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDG------------HVALLH--ASTNSLIVGDHCVGQG-------- 358 (490)
Q Consensus 301 ~~~~~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g------------~i~l~~--~~~~vLftGD~l~~~~-------- 358 (490)
...... ....++.|+.+++++.+++++.+. |+.. ..+|.+ ++.+++|+||+-+...
T Consensus 79 ~~~~~~-~~~~~~~~~~~~~~~~~i~~~p~~-H~~~~~~~~~~~~~~~~~g~~i~~~~~~i~~~GDt~~~~~~~~~~~~~ 156 (228)
T PRK00685 79 SEKGVE-KTHPMNIGGTVEFDGGKVKLTPAL-HSSSFIDEDGITYLGNPTGFVITFEGKTIYHAGDTGLFSDMKLIGELH 156 (228)
T ss_pred HhcCCC-ceeeccCCCcEEECCEEEEEEEEE-cCCCCcCCCCcccCCCceEEEEEECCeEEEEecCccchhHHHHHHHhh
Confidence 543221 456778899999999888876432 3222 255555 4567999999854221
Q ss_pred ccccc-cCCCCC-HHHHHHHHHHHHcCCCCEEEcCCCCCC
Q 011237 359 SAVLD-ITAGGN-MTDYFQSTYKFLELSPHALIPMHGRVN 396 (490)
Q Consensus 359 ~~~~~-~~~~~~-~~~~~~SL~~L~~l~~~~ilPgHG~~~ 396 (490)
.+.+. .+..+. -....++++-.+.++++.++|.|-..+
T Consensus 157 ~~D~~~~~~~~~~h~~~~ea~~~~~~~~~k~~v~~H~~~~ 196 (228)
T PRK00685 157 KPDVALLPIGDNFTMGPEDAALAVELIKPKIVIPMHYNTF 196 (228)
T ss_pred CCCEEEEecCCccccCHHHHHHHHHhhCCCEEEEeccCCC
Confidence 01000 011111 122345556677778999999998754
No 18
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.10 E-value=2.1e-09 Score=103.49 Aligned_cols=74 Identities=22% Similarity=0.330 Sum_probs=59.8
Q ss_pred CCcceEEEecCC--eEEEcCCCCCh-HHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhC-CCCEEEeChh
Q 011237 220 DCGNHRFVAQGE--ALIVDPGCRSE-FHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCN-PDAILLAHEN 295 (490)
Q Consensus 220 ~~~~~~~li~g~--~iLIDtG~~~~-~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~-p~a~I~~~~~ 295 (490)
...+-+++++.+ .+|+|||.... ...+++.+..++.++++|++||.|+||+| |+.++.+.. ++.+||+|+.
T Consensus 19 a~hGfS~LVE~~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~G-----GL~~~~~~~~~~i~v~ahp~ 93 (259)
T COG1237 19 AEHGFSALVEDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTG-----GLPYLLEENNPGIPVYAHPD 93 (259)
T ss_pred ccCceEEEEEcCCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccC-----chHhHHhccCCCceEEeChH
Confidence 445667777543 79999996554 56677777778889999999999999999 999987744 8899999987
Q ss_pred hHH
Q 011237 296 TMR 298 (490)
Q Consensus 296 ~~~ 298 (490)
...
T Consensus 94 af~ 96 (259)
T COG1237 94 AFK 96 (259)
T ss_pred HHh
Confidence 755
No 19
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.07 E-value=4.9e-09 Score=112.78 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=97.6
Q ss_pred cceEEEe--cCCeEEEcCCCCChHH---------HHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEE
Q 011237 222 GNHRFVA--QGEALIVDPGCRSEFH---------EELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAIL 290 (490)
Q Consensus 222 ~~~~~li--~g~~iLIDtG~~~~~~---------~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I 290 (490)
+.|+|++ +++.+++|+|...... ..+.-+.....++++||+||.|.||+| |++++......++|
T Consensus 21 GkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIG-----aip~ll~~~~~~pi 95 (555)
T COG0595 21 GKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIG-----ALPYLLKQVLFAPI 95 (555)
T ss_pred ccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhcc-----chHHHHhcCCcCce
Confidence 3444444 5679999999643310 011112223346779999999999999 99999987766999
Q ss_pred EeChhhHHhhccC----C-C--CCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEE--CCCCEEEEccccCCC
Q 011237 291 LAHENTMRRIGKD----D-W--SLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLH--ASTNSLIVGDHCVGQ 357 (490)
Q Consensus 291 ~~~~~~~~~l~~~----~-~--~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~--~~~~vLftGD~l~~~ 357 (490)
|+++-+...++.. . . ......+..++.+++++..++++.+-.--|+.+++.+ |...|++|||.-+..
T Consensus 96 y~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~Tp~G~Iv~TGDFk~d~ 171 (555)
T COG0595 96 YASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKTPEGNIVYTGDFKFDP 171 (555)
T ss_pred ecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEeCcEEEEEEeecccCccceEEEEECCCccEEEeCCEEecC
Confidence 9999888776542 1 1 2456789999999999999999999988899988776 456699999997643
No 20
>PRK11539 ComEC family competence protein; Provisional
Probab=99.06 E-value=4.5e-09 Score=118.67 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=80.2
Q ss_pred CCeEEEcCCCCC----hHHHHHHHHHHhCC-CceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCC
Q 011237 230 GEALIVDPGCRS----EFHEELLKVVASLP-RKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDD 304 (490)
Q Consensus 230 g~~iLIDtG~~~----~~~~~L~~~~~~~~-~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~ 304 (490)
++++|||||... ...+.+...++..+ .+++|++||.|.||+| |+..+.+.+|..+++.+....
T Consensus 520 ~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~G-----Gl~~Ll~~~~~~~i~~~~~~~------- 587 (755)
T PRK11539 520 GKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRG-----GLASLLHAWPMAWIRSPLNWA------- 587 (755)
T ss_pred CEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCC-----CHHHHHHhCCcceeeccCccc-------
Confidence 569999999742 12344455555443 4679999999999999 999999998888898864211
Q ss_pred CCCCceecCCCceEEECCEEEEEEeCCCCC-----CCCeEEEEC--CCCEEEEccc
Q 011237 305 WSLGYTSVSGSEDICVGGQRLTVVFSPGHT-----DGHVALLHA--STNSLIVGDH 353 (490)
Q Consensus 305 ~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT-----~g~i~l~~~--~~~vLftGD~ 353 (490)
.......|+.+.+++.++++++.++|+ ++++++.+. +.++||+||.
T Consensus 588 ---~~~~~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~~~LltGDi 640 (755)
T PRK11539 588 ---NHLPCVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDDGKHSILLTGDL 640 (755)
T ss_pred ---CcccccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEECCEEEEEEeCC
Confidence 123356889999999999999887765 446666664 3569999995
No 21
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.02 E-value=1.3e-09 Score=119.97 Aligned_cols=132 Identities=17% Similarity=0.173 Sum_probs=86.8
Q ss_pred CCCCcceEEEec--CCeEEEcCCCCChH-HHHHHHHH----HhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEE
Q 011237 218 SDDCGNHRFVAQ--GEALIVDPGCRSEF-HEELLKVV----ASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAIL 290 (490)
Q Consensus 218 ~~~~~~~~~li~--g~~iLIDtG~~~~~-~~~L~~~~----~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I 290 (490)
.+..+.+||++. +..+|||||..... ........ ....++++||+||.|.||+| ++..+.+...+.+|
T Consensus 183 ~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG-----~LP~L~k~g~~gpI 257 (630)
T TIGR03675 183 FREVGRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSG-----LVPLLFKYGYDGPV 257 (630)
T ss_pred CCccCCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHh-----hHHHHHHhCCCCce
Confidence 344556778773 45899999976532 01100111 11345679999999999999 99999876557899
Q ss_pred EeChhhHHhhc-----------cCCCC------------CCceecCCCceEEEC-CEEEEEEeCCCCCCCCeEEEEC--C
Q 011237 291 LAHENTMRRIG-----------KDDWS------------LGYTSVSGSEDICVG-GQRLTVVFSPGHTDGHVALLHA--S 344 (490)
Q Consensus 291 ~~~~~~~~~l~-----------~~~~~------------~~~~~~~~g~~l~lg-g~~l~vi~tPGHT~g~i~l~~~--~ 344 (490)
|++..+.+.+. ..... ..+.++..++.++++ +.+++++ -.||+.|+.++.+. +
T Consensus 258 Y~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~-~AGHilGsa~~~~~i~d 336 (630)
T TIGR03675 258 YCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFY-NAGHILGSAIAHLHIGD 336 (630)
T ss_pred eecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEe-cCccccCceEEEEEECC
Confidence 99987654321 00111 123567778888884 6666655 46999999876542 3
Q ss_pred --CCEEEEccccC
Q 011237 345 --TNSLIVGDHCV 355 (490)
Q Consensus 345 --~~vLftGD~l~ 355 (490)
.+++|+||.-.
T Consensus 337 g~~~IvYTGD~~~ 349 (630)
T TIGR03675 337 GLYNIVYTGDFKY 349 (630)
T ss_pred CCEEEEEeCCCCC
Confidence 36999999854
No 22
>PRK02113 putative hydrolase; Provisional
Probab=99.01 E-value=5.9e-09 Score=102.47 Aligned_cols=120 Identities=17% Similarity=0.237 Sum_probs=84.5
Q ss_pred ceEEEe--cCCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHh--CCCCEEEeChhhHH
Q 011237 223 NHRFVA--QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKC--NPDAILLAHENTMR 298 (490)
Q Consensus 223 ~~~~li--~g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~--~p~a~I~~~~~~~~ 298 (490)
.++++| ++..+|||+|.+.. .++.+. ...++++|++||.|.||++ |+..+... ....+||+++...+
T Consensus 35 ~~s~li~~~~~~iLiD~G~g~~--~~l~~~--~~~~id~I~lTH~H~DH~~-----gl~~l~~~~~~~~~~i~~~~~~~~ 105 (252)
T PRK02113 35 RTSALVETEGARILIDCGPDFR--EQMLRL--PFGKIDAVLITHEHYDHVG-----GLDDLRPFCRFGEVPIYAEQYVAE 105 (252)
T ss_pred eeEEEEEECCeEEEEECCchHH--HHHHhc--CccccCEEEECCCChhhhC-----CHHHHHHhccCCCceEEECHHHHH
Confidence 345555 24589999998643 233332 4566779999999999999 98876432 24678999988776
Q ss_pred hhccCC--------CC----CCceecCCCceEEECCEEEEEEeCCCCC-CCCeEEEECCCCEEEEcccc
Q 011237 299 RIGKDD--------WS----LGYTSVSGSEDICVGGQRLTVVFSPGHT-DGHVALLHASTNSLIVGDHC 354 (490)
Q Consensus 299 ~l~~~~--------~~----~~~~~~~~g~~l~lgg~~l~vi~tPGHT-~g~i~l~~~~~~vLftGD~l 354 (490)
.+.... ++ ..+..++.|+.+++++.+++.+.+. |+ ...+++.+ ++++|+||+-
T Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~-H~~~~~~gy~i--~~i~y~~Dt~ 171 (252)
T PRK02113 106 RLRSRMPYCFVEHSYPGVPNIPLREIEPDRPFLVNHTEVTPLRVM-HGKLPILGYRI--GKMAYITDML 171 (252)
T ss_pred HHHhhCCeeeccCCCCCCcceeeEEcCCCCCEEECCeEEEEEEec-CCCccEEEEEe--CCEEEccCCC
Confidence 654321 11 2356678899999999999888776 54 33566666 6899999984
No 23
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=98.96 E-value=3.2e-09 Score=107.42 Aligned_cols=116 Identities=15% Similarity=0.143 Sum_probs=77.8
Q ss_pred CCcceEEEec------CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHh------CCC
Q 011237 220 DCGNHRFVAQ------GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKC------NPD 287 (490)
Q Consensus 220 ~~~~~~~li~------g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~------~p~ 287 (490)
..++++|+++ ++.+|||+|.+.. ..+.+...++.++++||+||.|.||++ |+..+... ...
T Consensus 14 ~r~~s~~lv~~~~~~~~~~iLiD~G~g~~--~~l~~~~i~~~~id~IfiTH~H~DHi~-----Gl~~ll~~~~~~~~~~~ 86 (303)
T TIGR02649 14 TRNVTAILLNLQHPTQSGLWLFDCGEGTQ--HQLLHTAFNPGKLDKIFISHLHGDHLF-----GLPGLLCSRSMSGIIQP 86 (303)
T ss_pred CCCccEEEEEccCCCCCCEEEEECCccHH--HHHHHhCCCHHHCcEEEEeCCChhhcC-----CHHHHHHHHHhcCCCCC
Confidence 3345566663 2579999998864 344444334466789999999999999 99876431 134
Q ss_pred CEEEeChhhHHhhccC--------CCCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEEC
Q 011237 288 AILLAHENTMRRIGKD--------DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA 343 (490)
Q Consensus 288 a~I~~~~~~~~~l~~~--------~~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~ 343 (490)
.+||+++...+.+... .....+..+..++.+..++.+++.+.+. |+...++|.+.
T Consensus 87 l~Iygp~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~ 149 (303)
T TIGR02649 87 LTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLE-HPLECYGYRIE 149 (303)
T ss_pred eEEEechhHHHHHHHHHHhcccccCCceEEEEcCCCceEecCCeEEEEEEcc-CccceEEEEEe
Confidence 6899998766554321 1122335567788888888778777665 66677777764
No 24
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=98.93 E-value=1.7e-08 Score=99.25 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=77.6
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHh-CCCCEEEeChhhHHh--hccCCCC
Q 011237 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKC-NPDAILLAHENTMRR--IGKDDWS 306 (490)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~-~p~a~I~~~~~~~~~--l~~~~~~ 306 (490)
+..+|||+|... +.+. ....++++|++||.|.||++ |+..+... .+.++||++...... +.+....
T Consensus 46 ~~~iLiD~G~~~-----~~~~-~~~~~i~~i~iTH~H~DHi~-----gl~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 114 (250)
T PRK11244 46 GARTLIDAGLPD-----LAER-FPPGSLQQILLTHYHMDHVQ-----GLFPLRWGVGDPIPVYGPPDPEGCDDLFKHPGI 114 (250)
T ss_pred CCEEEEECCChH-----Hhhc-CCcccCCEEEEccCchhhhc-----cHHHHHhhcCCceeEEeCCchhhHHHHhcCccc
Confidence 458999999532 2221 23456779999999999999 88776432 246789998753211 1111101
Q ss_pred CCc-eecCCCceEEECCEEEEEEeCCCCCCCCeEEEECC--CCEEEEcccc
Q 011237 307 LGY-TSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAS--TNSLIVGDHC 354 (490)
Q Consensus 307 ~~~-~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~--~~vLftGD~l 354 (490)
..+ ..+++++.+.+++.+++.+.++ |+.++++|.+.. .+++|+||+.
T Consensus 115 ~~~~~~l~~~~~~~~~~~~I~~~~~~-H~~~s~g~~i~~~~~~i~ysgDt~ 164 (250)
T PRK11244 115 LDFSHPLEPFEPFDLGGLQVTPLPLN-HSKLTFGYLLETAHSRVAYLTDTV 164 (250)
T ss_pred cccccccCCCCCeeECCEEEEEEeeC-CCcceeEEEEecCCeEEEEEcCCC
Confidence 122 3477889999999888888774 888889988753 4699999984
No 25
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=98.93 E-value=4.9e-09 Score=105.57 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=74.9
Q ss_pred cceEEEec--CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHh------CCCCEEEeC
Q 011237 222 GNHRFVAQ--GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKC------NPDAILLAH 293 (490)
Q Consensus 222 ~~~~~li~--g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~------~p~a~I~~~ 293 (490)
+++|+++. +..+|||+|.+.. .++.+...+..++.+||+||.|.||++ |+..+... .....||++
T Consensus 17 ~~~~~~v~~~~~~iLiD~G~g~~--~~l~~~~~~~~~i~~IfiTH~H~DH~~-----Gl~~l~~~~~~~~~~~~i~Iy~p 89 (299)
T TIGR02651 17 NLPSIALKLNGELWLFDCGEGTQ--RQMLRSGISPMKIDRIFITHLHGDHIL-----GLPGLLSTMSFQGRKEPLTIYGP 89 (299)
T ss_pred CCceEEEEECCeEEEEECCHHHH--HHHHHcCCCHHHCcEEEEECCchhhhc-----ChHHHHHhhccCCCCceEEEECC
Confidence 34455552 4589999998643 334333223345679999999999999 99877542 124679999
Q ss_pred hhhHHhhcc------C--CCCCCceecCCCc-eEEECCEEEEEEeCCCCCCCCeEEEEC
Q 011237 294 ENTMRRIGK------D--DWSLGYTSVSGSE-DICVGGQRLTVVFSPGHTDGHVALLHA 343 (490)
Q Consensus 294 ~~~~~~l~~------~--~~~~~~~~~~~g~-~l~lgg~~l~vi~tPGHT~g~i~l~~~ 343 (490)
+...+.+.. . .....+..+.+++ .+..++.+++.+.+. |+...++|.+.
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~ 147 (299)
T TIGR02651 90 PGIKEFIETSLRVSYTYLNYPIKIHEIEEGGLVFEDDGFKVEAFPLD-HSIPSLGYRFE 147 (299)
T ss_pred ccHHHHHHHHHHHcccCCCceEEEEEccCCCceEecCCEEEEEEEcC-CCCceEEEEEE
Confidence 876655432 1 1112235577777 588899888888776 66667776653
No 26
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=98.92 E-value=1.2e-08 Score=99.46 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=76.7
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHh-CCCCEEEeChhhHHh--hccCCCC
Q 011237 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKC-NPDAILLAHENTMRR--IGKDDWS 306 (490)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~-~p~a~I~~~~~~~~~--l~~~~~~ 306 (490)
+..+|||+|... +.+. ....++++|++||.|.||++ |+..+... .....||+++.+... +....-.
T Consensus 36 ~~~iliD~G~~~-----~~~~-~~~~~id~i~iTH~H~DHi~-----gl~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 104 (238)
T TIGR03307 36 GARTLIDAGLTD-----LAER-FPPGSLQAILLTHYHMDHVQ-----GLFPLRWGVGEPIPVYGPPDEEGCDDLFKHPGI 104 (238)
T ss_pred CcEEEEECCChh-----Hhhc-cCccCCCEEEEecCchhhhc-----chHHHHHhcCCceeEEeCchHhhHHHHhcCccc
Confidence 568999999542 1221 23456779999999999999 88666432 246789998765321 1111101
Q ss_pred CCc-eecCCCceEEECCEEEEEEeCCCCCCCCeEEEEC--CCCEEEEcccc
Q 011237 307 LGY-TSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--STNSLIVGDHC 354 (490)
Q Consensus 307 ~~~-~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~--~~~vLftGD~l 354 (490)
..+ ..+..++.+.+++.+|+.+.+. |+.+++++.+. +.+++|+||+-
T Consensus 105 ~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~~~~g~~i~~~~~~i~y~gDt~ 154 (238)
T TIGR03307 105 LDFSKPLEAFEPFDLGGLRVTPLPLV-HSKLTFGYLLETDGQRVAYLTDTA 154 (238)
T ss_pred ccccccccCCceEEECCEEEEEEecC-CCCcceEEEEecCCcEEEEEecCC
Confidence 122 2367888999999888887665 88788888875 34699999983
No 27
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.89 E-value=5.7e-08 Score=108.38 Aligned_cols=113 Identities=16% Similarity=0.253 Sum_probs=77.5
Q ss_pred CCeEEEcCCCCCh----HHHHHHHHHHhCC-CceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCC
Q 011237 230 GEALIVDPGCRSE----FHEELLKVVASLP-RKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDD 304 (490)
Q Consensus 230 g~~iLIDtG~~~~----~~~~L~~~~~~~~-~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~ 304 (490)
++.+|||||.... ..+.+...++..+ .+++|++||.|.||+| |+..+.+.++..+++.+..... .
T Consensus 459 ~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiG-----Gl~~ll~~~~v~~i~~~~~~~~----~- 528 (662)
T TIGR00361 459 GKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIG-----GAEIILKHHPVKRLVIPKGFVE----E- 528 (662)
T ss_pred CeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhC-----cHHHHHHhCCccEEEeccchhh----C-
Confidence 4689999997521 1233444444432 2779999999999999 9999999887778887654211 0
Q ss_pred CCCCceecCCCceEEECCEEEEEEeCC-C---C-CCCCeEEEEC--CCCEEEEccc
Q 011237 305 WSLGYTSVSGSEDICVGGQRLTVVFSP-G---H-TDGHVALLHA--STNSLIVGDH 353 (490)
Q Consensus 305 ~~~~~~~~~~g~~l~lgg~~l~vi~tP-G---H-T~g~i~l~~~--~~~vLftGD~ 353 (490)
......+..|+.+++++.++++++-+ + + ..+++++.+. +.++||+||.
T Consensus 529 -~~~~~~~~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~~~~L~tGD~ 583 (662)
T TIGR00361 529 -GVAIEECKRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDDGGNSWLLTGDL 583 (662)
T ss_pred -CCceEecCCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEECCeeEEEecCC
Confidence 12345578899999999999999532 1 1 2334554443 4579999997
No 28
>PRK04286 hypothetical protein; Provisional
Probab=98.88 E-value=3.3e-08 Score=99.74 Aligned_cols=131 Identities=12% Similarity=0.157 Sum_probs=73.7
Q ss_pred CCCcceEEEec--CCeEEEcCCCCC---------------hHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHH
Q 011237 219 DDCGNHRFVAQ--GEALIVDPGCRS---------------EFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSII 281 (490)
Q Consensus 219 ~~~~~~~~li~--g~~iLIDtG~~~---------------~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l 281 (490)
.|..+||++|+ +..+|||+|... .....+.+....+.++++||+||.|.||++ |...+
T Consensus 11 ~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~-----g~~~~ 85 (298)
T PRK04286 11 LGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHT-----PFYED 85 (298)
T ss_pred CCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCC-----Ccccc
Confidence 44455677663 448999999542 112233344445567789999999999999 66543
Q ss_pred H----------HhCCCCEEEe-Chhh-H---HhhccCCC------CCCceecCCCceEEECCEEEEEEeCCCCCCC--Ce
Q 011237 282 Q----------KCNPDAILLA-HENT-M---RRIGKDDW------SLGYTSVSGSEDICVGGQRLTVVFSPGHTDG--HV 338 (490)
Q Consensus 282 ~----------~~~p~a~I~~-~~~~-~---~~l~~~~~------~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g--~i 338 (490)
. ..+...+++. +... . .......+ ......+..++.+.+|+.++++...-.|... .+
T Consensus 86 ~y~~~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~~~~~~~ 165 (298)
T PRK04286 86 PYELSDEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHGADGSKL 165 (298)
T ss_pred ccccccccchHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEECCEEEEEeccCCCCCCCCcc
Confidence 1 1112223332 1111 0 00000011 0023456778899999988887743356432 33
Q ss_pred EE----E--ECCCCEEEEcccc
Q 011237 339 AL----L--HASTNSLIVGDHC 354 (490)
Q Consensus 339 ~l----~--~~~~~vLftGD~l 354 (490)
++ . ..+.+++|+||+-
T Consensus 166 Gy~i~~ri~~gg~~~~~~gDt~ 187 (298)
T PRK04286 166 GYVIMVRISDGDESFVFASDVQ 187 (298)
T ss_pred ceEEEEEEEeCCEEEEEECCCC
Confidence 32 1 2345799999996
No 29
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=98.85 E-value=1.4e-08 Score=102.46 Aligned_cols=123 Identities=15% Similarity=0.224 Sum_probs=84.3
Q ss_pred ceEEEe-c-C-CeEEEcCCCCChHHHHHHHH-------HHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEe
Q 011237 223 NHRFVA-Q-G-EALIVDPGCRSEFHEELLKV-------VASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLA 292 (490)
Q Consensus 223 ~~~~li-~-g-~~iLIDtG~~~~~~~~L~~~-------~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~ 292 (490)
.+++++ . + ..+|||+|++.. +++.+. .....++.+||+||.|.||+. |+..+++. ...+||+
T Consensus 38 rss~ll~~~g~~~iLID~Gpd~r--~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~-----GL~~L~~~-~~lpVya 109 (302)
T TIGR02108 38 QSSIAVSADGERWVLLNASPDIR--QQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTT-----GLLTLREG-QPFTLYA 109 (302)
T ss_pred ccEEEEEeCCCEEEEEECCHHHH--HHHHhCcccccccCCCcccCCEEEEeCCCcchhh-----CHHHHcCC-CCceEEE
Confidence 344555 2 3 389999998754 334333 223567789999999999999 99999765 4789999
Q ss_pred ChhhHHhhccCC-------CCCCceecCCCceEEEC-----CEEEEEEeCCC-------C------CCCCeEEEECC---
Q 011237 293 HENTMRRIGKDD-------WSLGYTSVSGSEDICVG-----GQRLTVVFSPG-------H------TDGHVALLHAS--- 344 (490)
Q Consensus 293 ~~~~~~~l~~~~-------~~~~~~~~~~g~~l~lg-----g~~l~vi~tPG-------H------T~g~i~l~~~~--- 344 (490)
++.+.+.+.+.. +...+..+..++.+.++ +.+|+.+.++. | ..+.++|.+..
T Consensus 110 ~~~t~~~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~ 189 (302)
T TIGR02108 110 TEMVLQDLSDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTT 189 (302)
T ss_pred CHHHHHHHHhCCCccccchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCCC
Confidence 999988875311 11122456667777664 47888888871 3 23566777753
Q ss_pred -CCEEEEccc
Q 011237 345 -TNSLIVGDH 353 (490)
Q Consensus 345 -~~vLftGD~ 353 (490)
.+++|++|+
T Consensus 190 g~~~~y~tD~ 199 (302)
T TIGR02108 190 GKRLFYIPGC 199 (302)
T ss_pred CcEEEEECCC
Confidence 359999997
No 30
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=98.83 E-value=2.3e-08 Score=101.15 Aligned_cols=123 Identities=12% Similarity=0.160 Sum_probs=84.6
Q ss_pred ceEEEec--CC-eEEEcCCCCChHHHHHHHHH-------HhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEe
Q 011237 223 NHRFVAQ--GE-ALIVDPGCRSEFHEELLKVV-------ASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLA 292 (490)
Q Consensus 223 ~~~~li~--g~-~iLIDtG~~~~~~~~L~~~~-------~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~ 292 (490)
.++++|. +. .+|||+|++.. .++.+.. .+..++++||+||.|+||+. |+..|+.. ...+||+
T Consensus 39 ~ss~li~~~g~~~iLiD~G~g~~--~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~-----Gl~~l~~~-~~l~Vyg 110 (302)
T PRK05184 39 QSSIAVSADGEDWVLLNASPDIR--QQIQATPALQPARGLRDTPIAAVVLTDGQIDHTT-----GLLTLREG-QPFPVYA 110 (302)
T ss_pred ccEEEEEcCCCEEEEEECChhHH--HHHHhchhcCccccCCcccccEEEEeCCchhhhh-----ChHhhccC-CCeEEEe
Confidence 4455553 32 59999997654 3444431 13346789999999999999 99988654 4789999
Q ss_pred ChhhHHhhccC-C-C-------CCCceecCCCceEEEC---CEEEEEEeCC------------CCCCCCeEEEEC----C
Q 011237 293 HENTMRRIGKD-D-W-------SLGYTSVSGSEDICVG---GQRLTVVFSP------------GHTDGHVALLHA----S 344 (490)
Q Consensus 293 ~~~~~~~l~~~-~-~-------~~~~~~~~~g~~l~lg---g~~l~vi~tP------------GHT~g~i~l~~~----~ 344 (490)
++.+.+.+.+. . + ...+..+..++.+.++ +.+|+.+.++ -|....++|.+. +
T Consensus 111 ~~~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g 190 (302)
T PRK05184 111 TPAVLEDLSTGFPIFNVLDHYGGVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATG 190 (302)
T ss_pred CHHHHHHHHhcCCcccccccccceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCC
Confidence 99888776542 0 1 1133467777888886 7888888775 145567788773 2
Q ss_pred CCEEEEccc
Q 011237 345 TNSLIVGDH 353 (490)
Q Consensus 345 ~~vLftGD~ 353 (490)
.+++|++|.
T Consensus 191 ~~~~y~tD~ 199 (302)
T PRK05184 191 KRLFYAPGL 199 (302)
T ss_pred cEEEEECCC
Confidence 358999776
No 31
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=98.81 E-value=7e-08 Score=99.38 Aligned_cols=141 Identities=15% Similarity=0.121 Sum_probs=89.3
Q ss_pred CCCceEEEecCCCccccCchhhccHHHHHHhC-CCCEEEeChhhHHhhccCCCC-CCceecCCCceEEECCEEEEEEeC-
Q 011237 254 LPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCN-PDAILLAHENTMRRIGKDDWS-LGYTSVSGSEDICVGGQRLTVVFS- 330 (490)
Q Consensus 254 ~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~-p~a~I~~~~~~~~~l~~~~~~-~~~~~~~~g~~l~lgg~~l~vi~t- 330 (490)
+..+++|++||.|.||+..+ .+..+.+.. +++.++++....+.+.....+ .....++.|+.+++++.+|+++..
T Consensus 107 i~~IDaVLiTH~H~DHlD~~---tl~~l~~~~~~~~~~v~p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~ig~v~It~lpa~ 183 (355)
T PRK11709 107 IREIDAVLATHDHSDHIDVN---VAAAVLQNCADHVKFIGPQACVDLWIGWGVPKERCIVVKPGDVVKVKDIKIHALDSF 183 (355)
T ss_pred CCCCCEEEECCCcccccChH---HHHHHHhhcCCCcEEEEcHHHHHHHHhcCCCcceEEEecCCCcEEECCEEEEEEecc
Confidence 45677999999999999621 344554433 467899988876665443322 245678999999999988888854
Q ss_pred --------C-CCCCC-----------CeEEEE--CCCCEEEEccccCCCC--------cccccc-CCCC------CHHHH
Q 011237 331 --------P-GHTDG-----------HVALLH--ASTNSLIVGDHCVGQG--------SAVLDI-TAGG------NMTDY 373 (490)
Q Consensus 331 --------P-GHT~g-----------~i~l~~--~~~~vLftGD~l~~~~--------~~~~~~-~~~~------~~~~~ 373 (490)
| .|+.+ .+++.+ ++.+++|+||+.+... ...+.. +..+ .-..-
T Consensus 184 h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~~~~~i~~~~~iDvall~iG~~p~~~~~hm~p 263 (355)
T PRK11709 184 DRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSNYFAKHGNDHQIDVALGSYGENPRGITDKMTS 263 (355)
T ss_pred ccccccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccHHHHHHHhcCCCCEEEecCCCCCCCCcCCCCH
Confidence 2 23211 244554 5678999999865320 011100 1111 01223
Q ss_pred HHHHHHHHcCCCCEEEcCCCCCCC
Q 011237 374 FQSTYKFLELSPHALIPMHGRVNL 397 (490)
Q Consensus 374 ~~SL~~L~~l~~~~ilPgHG~~~~ 397 (490)
.++++-.+.++++.++|-|-..+.
T Consensus 264 ~ea~~~a~~l~ak~vIpiH~dtf~ 287 (355)
T PRK11709 264 IDILRMAESLNAKVVIPVHHDIWS 287 (355)
T ss_pred HHHHHHHHHcCCCEEEEEChhhcc
Confidence 466667778899999999998754
No 32
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=98.74 E-value=8.7e-09 Score=96.40 Aligned_cols=116 Identities=21% Similarity=0.334 Sum_probs=76.7
Q ss_pred eEEEcCCCCChHHHHHH-HHHH---hCCCceEEEecCCCccccCchhhccHHHHHH---hCCCCEEEeChhhHHhhc--c
Q 011237 232 ALIVDPGCRSEFHEELL-KVVA---SLPRKLIVFVTHHHRDHVDGEFIRGLSIIQK---CNPDAILLAHENTMRRIG--K 302 (490)
Q Consensus 232 ~iLIDtG~~~~~~~~L~-~~~~---~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~---~~p~a~I~~~~~~~~~l~--~ 302 (490)
.+|||||.+.. .-.+. +... .+.++.+|++||.|.||+. |+..+.. ..++ +|++++...+.+. .
T Consensus 2 ~iLiD~g~~~~-~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~-----gl~~l~~~~~~~~~-~i~~~~~~~~~l~~~~ 74 (194)
T PF12706_consen 2 RILIDCGPGTR-SLRLRQQIMQELEDLPDIDAVFITHSHPDHIA-----GLPSLIPAWAKHPK-PIYGPPETKEFLREYK 74 (194)
T ss_dssp EEEESE-TTHH-HHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHT-----THHHHHHHHHHCTT-EEEECHHHHHHHHHHH
T ss_pred EEEEeCCCCcc-cccccccccccccccCCCCEEEECCCCccccC-----ChHHHHHHhhcccc-eEEecHHHHHHHHhhh
Confidence 58999999764 11111 1111 2236679999999999988 8655543 2234 9999998877765 2
Q ss_pred CC----CC----CCceecCCCceEEECCEEEEEEeCCCCCCCCeE----EEEC--CCCEEEEccccC
Q 011237 303 DD----WS----LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVA----LLHA--STNSLIVGDHCV 355 (490)
Q Consensus 303 ~~----~~----~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~----l~~~--~~~vLftGD~l~ 355 (490)
.. .. .....+..++.+++++.+++.+.+. |..+..+ |.+. +.+++|+||+-.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~~~~~~~~g~~i~~~~~~i~~~gD~~~ 140 (194)
T PF12706_consen 75 FGILDLYPEEDNFDIIEISPGDEFEIGDFRITPFPAN-HGPPSYGGNKGFVIEPDGKKIFYSGDTNY 140 (194)
T ss_dssp HTHHTTCCTTSGEEEEEECTTEEEEETTEEEEEEEEE-SSSCCEEECCEEEEEETTEEEEEETSSSS
T ss_pred cccccccccccceeEEEeccCceEEeceEEEEEEecc-ccccccccCceEEEecCCcceEEeeccch
Confidence 11 11 1235677888999999999988665 6666654 5544 567999999854
No 33
>PRK02126 ribonuclease Z; Provisional
Probab=98.71 E-value=1.3e-07 Score=96.87 Aligned_cols=102 Identities=20% Similarity=0.222 Sum_probs=68.1
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhC----CCCEEEeChhhHHhhccCC-
Q 011237 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCN----PDAILLAHENTMRRIGKDD- 304 (490)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~----p~a~I~~~~~~~~~l~~~~- 304 (490)
+..+|||||. .+++.+ ..+.++.+||+||.|.||++ |+..|.... +.++||+++.+.+.+...-
T Consensus 27 ~~~iLiD~G~----~~~l~~--~~~~~i~~I~iTH~H~DHi~-----Gl~~l~~~~~~r~~~l~iygp~~~~~~l~~~~~ 95 (334)
T PRK02126 27 RRALLFDLGD----LHHLPP--RELLRISHIFVSHTHMDHFI-----GFDRLLRHCLGRPRRLRLFGPPGFADQVEHKLA 95 (334)
T ss_pred CeEEEEcCCC----HHHHhh--cCCCccCEEEEcCCChhHhC-----cHHHHHHHhccCCCCeEEEECHHHHHHHHHHhc
Confidence 4589999998 223332 24567789999999999999 999887653 4579999998876553311
Q ss_pred ---C------CCCce----e--------------------------cCCCceEEECCEEEEEEeCCCCCCCCeEEEEC
Q 011237 305 ---W------SLGYT----S--------------------------VSGSEDICVGGQRLTVVFSPGHTDGHVALLHA 343 (490)
Q Consensus 305 ---~------~~~~~----~--------------------------~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~ 343 (490)
+ ...+. . ..++..+..++.+|+++.+. |+--+++|.+.
T Consensus 96 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~~-H~vp~~gy~~~ 172 (334)
T PRK02126 96 GYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFLD-HGIPCLAFALE 172 (334)
T ss_pred cccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEcc-CCCceeEEEEE
Confidence 0 11111 1 12344466678888888877 76667777664
No 34
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1e-07 Score=93.03 Aligned_cols=149 Identities=21% Similarity=0.277 Sum_probs=94.3
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCCCc
Q 011237 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGY 309 (490)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~~ 309 (490)
++.+++|+|.+ .|.+.....+.|..+++||.|++|.| ++..|. ..+++.+. ++...+ ....
T Consensus 104 ~~v~v~~~gls-----~lak~~vt~d~i~~vv~t~~~~~hlg-----n~~~f~----~sp~l~~s--~e~~gr---~~~p 164 (302)
T KOG4736|consen 104 GDVVVVDTGLS-----VLAKEGVTLDQIDSVVITHKSPGHLG-----NNNLFP----QSPILYHS--MEYIGR---HVTP 164 (302)
T ss_pred CceEEEecCCc-----hhhhcCcChhhcceeEEeccCccccc-----cccccc----CCHHHhhh--hhhcCC---ccCh
Confidence 35889999987 44555666778889999999999999 887773 33443332 222221 1223
Q ss_pred eecCCCceEEECCEEEEEEeCCCCCCCCeEEEECC----CCEEEEccccCCCCccccc--cCC---CCCHHHHHHHHHHH
Q 011237 310 TSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAS----TNSLIVGDHCVGQGSAVLD--ITA---GGNMTDYFQSTYKF 380 (490)
Q Consensus 310 ~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~----~~vLftGD~l~~~~~~~~~--~~~---~~~~~~~~~SL~~L 380 (490)
..++.+..++++ ..+++..|||||...+.+.+.. ..+.++||++-......-. +.. ..+...-+++-.++
T Consensus 165 t~l~e~~~~~l~-~~~~V~~TpGht~~~isvlv~n~~~~GTv~itGDLf~~~~dlde~d~i~~~e~s~d~~~kr~~r~~~ 243 (302)
T KOG4736|consen 165 TELDERPYLKLS-PNVEVWKTPGHTQHDISVLVHNVDLYGTVAITGDLFPREEDLDEKDDIMSQEGSEDNAAKRQSRNRY 243 (302)
T ss_pred hhhccCCccccC-CceeEeeCCCCCCcceEEEEEeecccceEEEEeecccCCccccchhhhhhhccCCchhhhhhhhhcE
Confidence 457778888887 4688889999999999888763 5699999996433211110 000 01222222222222
Q ss_pred HcCCCCEEEcCCCCCCCCh
Q 011237 381 LELSPHALIPMHGRVNLWP 399 (490)
Q Consensus 381 ~~l~~~~ilPgHG~~~~~~ 399 (490)
.. =+|+++||||+++.-.
T Consensus 244 v~-l~D~ivpgHg~~f~v~ 261 (302)
T KOG4736|consen 244 VC-LADWIVPGHGPPFRVL 261 (302)
T ss_pred EE-EeeeeecCCCCceeec
Confidence 22 3678999999997643
No 35
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.56 E-value=9.7e-07 Score=88.23 Aligned_cols=118 Identities=20% Similarity=0.297 Sum_probs=75.7
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhC--CCceEEEecCCCccccCchhhccHHHHHHhC--CCCEEEeChhhHHhhccCCC
Q 011237 230 GEALIVDPGCRSEFHEELLKVVASL--PRKLIVFVTHHHRDHVDGEFIRGLSIIQKCN--PDAILLAHENTMRRIGKDDW 305 (490)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~--~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~--p~a~I~~~~~~~~~l~~~~~ 305 (490)
+..+++|||... ....+...++.. .+++.+|+||.|.||+| |+..+.+.+ +..-++..............
T Consensus 63 ~~~~l~dtg~~~-~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiG-----g~~~vl~~~~v~~~~i~~~~~~~~~~~~~~~ 136 (293)
T COG2333 63 GKTILYDTGNSM-GQDVIIPYLKSLGVRKLDQLILTHPDADHIG-----GLDEVLKTIKVPELWIYAGSDSTSTFVLRDA 136 (293)
T ss_pred CceEEeecCccc-CceeehhhHhHcCCccccEEEeccCCccccC-----CHHHHHhhCCCCcEEEeCCCCccchhhhhhc
Confidence 348999999841 112334444443 45679999999999999 999999844 43334333322111101111
Q ss_pred CCCceecCCCceEEECCEEEEEEeCCCCC-----CCCeEEEEC--CCCEEEEccc
Q 011237 306 SLGYTSVSGSEDICVGGQRLTVVFSPGHT-----DGHVALLHA--STNSLIVGDH 353 (490)
Q Consensus 306 ~~~~~~~~~g~~l~lgg~~l~vi~tPGHT-----~g~i~l~~~--~~~vLftGD~ 353 (490)
.........|+.+.+++..++++.-++.+ ..++++++. +..+||+||.
T Consensus 137 ~~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~LlTGD~ 191 (293)
T COG2333 137 GIPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSFLLTGDL 191 (293)
T ss_pred CCceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEEeCCeeEEEecCC
Confidence 34556778899999999999999555432 234555554 4579999997
No 36
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=1.7e-07 Score=99.04 Aligned_cols=126 Identities=21% Similarity=0.237 Sum_probs=83.8
Q ss_pred ceEEEe--cCCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhh
Q 011237 223 NHRFVA--QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRI 300 (490)
Q Consensus 223 ~~~~li--~g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l 300 (490)
.+|.++ .+..+++|+|..........-......+++.+++||+|.||+| ++..+....-+.+||++..+...+
T Consensus 14 ~s~~~l~~~~~~il~D~G~~~~~~~~~~p~~~~~~~vDavllTHaHlDH~g-----~lp~l~~~~~~~~v~aT~~T~~l~ 88 (427)
T COG1236 14 RSCVLLETGGTRILLDCGLFPGDPSPERPLLPPFPKVDAVLLTHAHLDHIG-----ALPYLVRNGFEGPVYATPPTAALL 88 (427)
T ss_pred cEEEEEEECCceEEEECCCCcCcCCccCCCCCCCCCcCEEEeccCchhhhc-----ccHHHHHhccCCceeeccCHHHHH
Confidence 344444 4568999999876522100000001114579999999999999 999887743347899988776543
Q ss_pred cc--------C--C--C----------CCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEEC--CCCEEEEcccc
Q 011237 301 GK--------D--D--W----------SLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--STNSLIVGDHC 354 (490)
Q Consensus 301 ~~--------~--~--~----------~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~--~~~vLftGD~l 354 (490)
.- . . + ....+++.-|+.+.+++.+++++ -.||.+|...+++. +.+++||||.-
T Consensus 89 ~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~-~AGHilGsa~~~le~~~~~ilytGD~~ 165 (427)
T COG1236 89 KVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFY-NAGHILGSAAILLEVDGGRILYTGDVK 165 (427)
T ss_pred HHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEe-cCCCccceeEEEEEeCCceEEEEeccC
Confidence 21 0 0 0 01234588899999999555544 46899999998886 56699999984
No 37
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.44 E-value=1.2e-06 Score=80.34 Aligned_cols=137 Identities=24% Similarity=0.399 Sum_probs=67.2
Q ss_pred ceEEEec--CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhh
Q 011237 223 NHRFVAQ--GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRI 300 (490)
Q Consensus 223 ~~~~li~--g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l 300 (490)
.+|++|+ |..+||||..... .......++.+|++||.|.||+... .+++.
T Consensus 7 ha~~~ie~~g~~iliDP~~~~~------~~~~~~~~~D~IlisH~H~DH~~~~------~l~~~---------------- 58 (163)
T PF13483_consen 7 HASFLIETGGKRILIDPWFSSV------GYAPPPPKADAILISHSHPDHFDPE------TLKRL---------------- 58 (163)
T ss_dssp TTEEEEEETTEEEEES--TTT--------T-TSS-B-SEEEESSSSTTT-CCC------CCCCH----------------
T ss_pred eeEEEEEECCEEEEECCCCCcc------CcccccCCCCEEEECCCccccCChh------Hhhhc----------------
Confidence 3455553 4589999996421 1111124566999999999999921 11110
Q ss_pred ccCCCCCCceecCCCceEEECCEEEEEEeC-----CCCCCC-CeEEEEC--CCCEEEEccccCCCCcc------ccc---
Q 011237 301 GKDDWSLGYTSVSGSEDICVGGQRLTVVFS-----PGHTDG-HVALLHA--STNSLIVGDHCVGQGSA------VLD--- 363 (490)
Q Consensus 301 ~~~~~~~~~~~~~~g~~l~lgg~~l~vi~t-----PGHT~g-~i~l~~~--~~~vLftGD~l~~~~~~------~~~--- 363 (490)
......+..++.+++++.+++.+.. .|+..+ .++|++. +.++++.||+....... .++
T Consensus 59 -----~~~~~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~~~~~~~~~~~~~~vDvl~ 133 (163)
T PF13483_consen 59 -----DRDIHVVAPGGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTGFPPDDEQLKQLGKVDVLF 133 (163)
T ss_dssp -----HTSSEEE-TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--S---HHHHHHH-S-SEEE
T ss_pred -----ccccEEEccceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCccCCCHHHHhcccCCCEEE
Confidence 1234556667889999988888744 355555 4555554 45699999996421100 000
Q ss_pred cCCCC-CHHHHHHHHHHHHcCCCCEEEcCC
Q 011237 364 ITAGG-NMTDYFQSTYKFLELSPHALIPMH 392 (490)
Q Consensus 364 ~~~~~-~~~~~~~SL~~L~~l~~~~ilPgH 392 (490)
.+..+ ......++++-++.+++++++|.|
T Consensus 134 ~p~~g~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 134 LPVGGPFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp EE--TTTS--HHHHHHHHHHCT-SEEEEES
T ss_pred ecCCCCcccCHHHHHHHHHHcCCCEEEeCC
Confidence 01112 123344445555566777777766
No 38
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=98.37 E-value=3.3e-06 Score=87.77 Aligned_cols=133 Identities=20% Similarity=0.172 Sum_probs=81.6
Q ss_pred CCCCcceEEEec--CCeEEEcCCCCChHH-----HHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEE
Q 011237 218 SDDCGNHRFVAQ--GEALIVDPGCRSEFH-----EELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAIL 290 (490)
Q Consensus 218 ~~~~~~~~~li~--g~~iLIDtG~~~~~~-----~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I 290 (490)
.+.-+-+|+++. ...+|+|||...... ..+.---.....+++|++||+|.||+| -++.|.+..-+-+|
T Consensus 189 ~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G-----~lP~LfkYgy~GPV 263 (637)
T COG1782 189 FREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCG-----FLPLLFKYGYDGPV 263 (637)
T ss_pred chhccceeEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeeccccccc-----chhhhhhcCCCCCe
Confidence 344455666663 348999999764421 111000001224679999999999999 89988886557799
Q ss_pred EeChhhHHhhc-----------cCCCCCCc------------eecCCCceEEEC-CEEEEEEeCCCCCCCCeEEEEC---
Q 011237 291 LAHENTMRRIG-----------KDDWSLGY------------TSVSGSEDICVG-GQRLTVVFSPGHTDGHVALLHA--- 343 (490)
Q Consensus 291 ~~~~~~~~~l~-----------~~~~~~~~------------~~~~~g~~l~lg-g~~l~vi~tPGHT~g~i~l~~~--- 343 (490)
|+.+.+.+.+. +.....+| .++.-|+.-++. +.++++ +-.||--|+.+..+.
T Consensus 264 Y~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf-~NAGHILGSA~~HlHIGd 342 (637)
T COG1782 264 YCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTF-YNAGHILGSAMAHLHIGD 342 (637)
T ss_pred eeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEE-ecccchhcceeeEEEecC
Confidence 99887655331 11112222 345555555553 445554 557899998776553
Q ss_pred -CCCEEEEccccCC
Q 011237 344 -STNSLIVGDHCVG 356 (490)
Q Consensus 344 -~~~vLftGD~l~~ 356 (490)
.-+++||||.-|.
T Consensus 343 GlyNi~yTGDfk~~ 356 (637)
T COG1782 343 GLYNIVYTGDFKFE 356 (637)
T ss_pred CceeEEEecccccc
Confidence 2469999998653
No 39
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.21 E-value=2.2e-05 Score=77.55 Aligned_cols=167 Identities=18% Similarity=0.190 Sum_probs=92.1
Q ss_pred ceEEEec--CCeEEEcCCCCChHHHHHH---HHHHhCCCceEEEecCCCccccCchhhccHHHHHHhC-CCCEEEeChhh
Q 011237 223 NHRFVAQ--GEALIVDPGCRSEFHEELL---KVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCN-PDAILLAHENT 296 (490)
Q Consensus 223 ~~~~li~--g~~iLIDtG~~~~~~~~L~---~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~-p~a~I~~~~~~ 296 (490)
+++++|+ +..+||||..+......-. ........+.+|++||.|.||++ ......... +.+.++.+...
T Consensus 14 ha~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~-----~~~~~~~~~~~~~~~~~p~~~ 88 (258)
T COG2220 14 HAAFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLD-----DETLIALRTNKAPVVVVPLGA 88 (258)
T ss_pred ceEEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccC-----HHHHHHHhcCCCcEEEeHHHH
Confidence 4555553 3479999998754211100 11123455679999999999999 444333332 23455565554
Q ss_pred HHhh-ccCCCCCCceecCCCceEEECCEEEEEE---eCCC-CCC--------CCeEEEE--CCCCEEEEccccCCC----
Q 011237 297 MRRI-GKDDWSLGYTSVSGSEDICVGGQRLTVV---FSPG-HTD--------GHVALLH--ASTNSLIVGDHCVGQ---- 357 (490)
Q Consensus 297 ~~~l-~~~~~~~~~~~~~~g~~l~lgg~~l~vi---~tPG-HT~--------g~i~l~~--~~~~vLftGD~l~~~---- 357 (490)
.... ...........+..++.+.+++.++.++ +.+. |++ +..++.+ ++.+++++||+-+..
T Consensus 89 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iyh~GDt~~~~~~~~ 168 (258)
T COG2220 89 GDLLIRDGVEAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVYHAGDTGYLFLIIE 168 (258)
T ss_pred HHHHHhcCCCcceEEeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEEEeCCceEEeccCccHHHHhhh
Confidence 3333 2222222345667788888888765443 3333 332 2334444 456799999994210
Q ss_pred -Ccc--cc-ccCCCC----CHHHHHHHHHHHHcCCCCEEEcCCCC
Q 011237 358 -GSA--VL-DITAGG----NMTDYFQSTYKFLELSPHALIPMHGR 394 (490)
Q Consensus 358 -~~~--~~-~~~~~~----~~~~~~~SL~~L~~l~~~~ilPgHG~ 394 (490)
..+ .+ -.|..+ .+....+++...+.++++.++|.|..
T Consensus 169 ~~~~~~DvallPig~~~~~~~~~~~~~~~~~~~l~~~~viP~Hy~ 213 (258)
T COG2220 169 ELDGPVDVALLPIGGYPNATMMPPEAAVAAAEVLRPKRVIPMHYG 213 (258)
T ss_pred hhcCCccEEEeccCCCCCCccCCHHHHHHHHHHhcCCeEEeeccc
Confidence 011 11 111121 12234444444577899999999987
No 40
>PRK00055 ribonuclease Z; Reviewed
Probab=98.10 E-value=4.7e-06 Score=82.29 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=48.5
Q ss_pred cceEEEe--cCCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHh------CCCCEEEeC
Q 011237 222 GNHRFVA--QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKC------NPDAILLAH 293 (490)
Q Consensus 222 ~~~~~li--~g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~------~p~a~I~~~ 293 (490)
+++|+++ .+..+|||+|.+.. .++.+......++.+||+||.|.||++ |+..+... .....||++
T Consensus 19 ~~~~~li~~~~~~iLiD~G~g~~--~~l~~~~~~~~~i~~i~lTH~H~DHi~-----Gl~~l~~~~~~~~~~~~l~iy~p 91 (270)
T PRK00055 19 NVSSILLRLGGELFLFDCGEGTQ--RQLLKTGIKPRKIDKIFITHLHGDHIF-----GLPGLLSTRSLSGRTEPLTIYGP 91 (270)
T ss_pred CCCEEEEEECCcEEEEECCHHHH--HHHHHcCCCHHHCCEEEEeCCCchhhC-----cHHHHHHHhhhcCCCceEEEECC
Confidence 3556666 34589999998643 333333223446779999999999999 99877532 134679998
Q ss_pred hhhHHhh
Q 011237 294 ENTMRRI 300 (490)
Q Consensus 294 ~~~~~~l 300 (490)
+.....+
T Consensus 92 ~~~~~~~ 98 (270)
T PRK00055 92 KGIKEFV 98 (270)
T ss_pred ccHHHHH
Confidence 7665543
No 41
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=97.94 E-value=3.7e-05 Score=76.04 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=59.9
Q ss_pred ceEEEecCCeEEEc-CCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHH-------hCCCCEEEeCh
Q 011237 223 NHRFVAQGEALIVD-PGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQK-------CNPDAILLAHE 294 (490)
Q Consensus 223 ~~~~li~g~~iLID-tG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~-------~~p~a~I~~~~ 294 (490)
.+.+++....+|+| +|.+.. ..++.+...++.||+||.|.||+| |+..+.. ..+...||.++
T Consensus 11 ~t~~~~~~~~ilfD~ag~g~~-----~~l~~k~~~l~~vFlTH~H~DHi~-----gL~~~~~~~~~~~~~~~p~~Vy~P~ 80 (277)
T TIGR02650 11 FSTIIYSPEEIIFDAAEEGSS-----TLGGKKVAAFKVFFLHGGHDDHAA-----GLGGVNIINNGGGDDEEKLDDFFPK 80 (277)
T ss_pred eEEEEECchhheehhhcccch-----hHHhhhHhhcCEEEeecCchhhhc-----chHHHHhhhhhcccCCCCCeEECCc
Confidence 34455556689999 887765 223445566789999999999999 8844322 11335689887
Q ss_pred hhHHhhc-------cC----CCCCCceecCCCceEEEC-C---EEEEEEeCCCC
Q 011237 295 NTMRRIG-------KD----DWSLGYTSVSGSEDICVG-G---QRLTVVFSPGH 333 (490)
Q Consensus 295 ~~~~~l~-------~~----~~~~~~~~~~~g~~l~lg-g---~~l~vi~tPGH 333 (490)
...+..+ .. ........+..|+.+.+. + ..++.+.|-.+
T Consensus 81 g~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~ 134 (277)
T TIGR02650 81 EGNAAEEETSEFIKAANEDLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHH 134 (277)
T ss_pred chhHHHHHHHHHHHHhhhhhccCcccCCCCCCcEEEeecCCccEEEecCccccc
Confidence 6444332 11 112334456666666654 2 44555555433
No 42
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.67 E-value=0.0015 Score=62.89 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=30.2
Q ss_pred ceecCCCceEEECCEEEEEEeCCCCCCC-C----e-EEEE--CCCCEEEEccc
Q 011237 309 YTSVSGSEDICVGGQRLTVVFSPGHTDG-H----V-ALLH--ASTNSLIVGDH 353 (490)
Q Consensus 309 ~~~~~~g~~l~lgg~~l~vi~tPGHT~g-~----i-~l~~--~~~~vLftGD~ 353 (490)
-..+.||.++++|+.++++-..--|-++ + + .+.+ .+..++|+.|.
T Consensus 133 ~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~faSDv 185 (304)
T COG2248 133 EIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVFASDV 185 (304)
T ss_pred eeEecCCceEEeCCEEEEecCCCCCCCcccccceEEEEEEecCCeEEEEcccc
Confidence 3467899999999999998833235444 2 2 1222 34569999997
No 43
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=97.52 E-value=0.00014 Score=63.33 Aligned_cols=114 Identities=20% Similarity=0.318 Sum_probs=93.8
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
..++|-|+.+ ++||+|++..+. .....|.+|++.+.. +|. ..+++..++
T Consensus 5 v~~ii~~~~~--~vLl~~r~~~~~---------~~~~~~~~pgG~i~~--~E~------------------~~~aa~REl 53 (134)
T PF00293_consen 5 VGVIIFNEDG--KVLLIKRSRSPI---------TFPGYWELPGGGIEP--GES------------------PEEAARREL 53 (134)
T ss_dssp EEEEEEETTT--EEEEEEESTTSS---------SSTTEEESSEEEECT--TSH------------------HHHHHHHHH
T ss_pred EEEEEEeCCc--EEEEEEecCCCC---------CCCCeEecceeeEEc--CCc------------------hhhhHHhhh
Confidence 3467777764 999999999887 345679999999887 554 155789999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc------cccccccccCCHHHHHHHHHccC
Q 011237 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN------QILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q------~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
.++.|+.+....+..+..|.++. +.+.+..+.||++.++.++ ..|.....|++++++++.....+
T Consensus 54 ~EE~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 124 (134)
T PF00293_consen 54 KEETGLDVSPLELLGLFSYPSPS--GDPEGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGR 124 (134)
T ss_dssp HHHHSEEEEEEEEEEEEEEEETT--TESSEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTH
T ss_pred hhcccceecccccceeeeecccC--CCcccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcc
Confidence 99999999888888899999888 5556899999999998888 23889999999999999877653
No 44
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=97.38 E-value=0.00022 Score=70.97 Aligned_cols=120 Identities=17% Similarity=0.235 Sum_probs=71.0
Q ss_pred cCCeEEEcCCCCChH--HHHHH--HHHHhCC----CceEEEecCCCccccCchhhccHHHHHHh-CCCCEEEeChhhHHh
Q 011237 229 QGEALIVDPGCRSEF--HEELL--KVVASLP----RKLIVFVTHHHRDHVDGEFIRGLSIIQKC-NPDAILLAHENTMRR 299 (490)
Q Consensus 229 ~g~~iLIDtG~~~~~--~~~L~--~~~~~~~----~~~~IviTH~H~DH~G~a~~~G~~~l~~~-~p~a~I~~~~~~~~~ 299 (490)
+|..+++|+|..-.. .+.+- ..+...+ -+..|++||.|.||+| .+++|-+. .-+-+||++-.+...
T Consensus 25 ~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcG-----aLPyfsEv~GY~GPIYMt~PTkai 99 (501)
T KOG1136|consen 25 GGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCG-----ALPYFSEVVGYDGPIYMTYPTKAI 99 (501)
T ss_pred CCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccc-----cccchHhhhCCCCceEEecchhhh
Confidence 578999999953211 11110 0111111 2357999999999999 99999773 235578876544321
Q ss_pred ----------hcc---CCCC-----------CCceecCCCceEEECCEEEEEE-eCCCCCCCCeEEEEC--CCCEEEEcc
Q 011237 300 ----------IGK---DDWS-----------LGYTSVSGSEDICVGGQRLTVV-FSPGHTDGHVALLHA--STNSLIVGD 352 (490)
Q Consensus 300 ----------l~~---~~~~-----------~~~~~~~~g~~l~lgg~~l~vi-~tPGHT~g~i~l~~~--~~~vLftGD 352 (490)
+.- .... .....+.-.+++.++. .+++- .-.||--|...|++. +..++|+||
T Consensus 100 cPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~-dl~IrayYAGHVLGAaMf~ikvGd~svvYTGD 178 (501)
T KOG1136|consen 100 CPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDE-DLQIRAYYAGHVLGAAMFYIKVGDQSVVYTGD 178 (501)
T ss_pred chHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecc-cceeeeeecccccceeEEEEEecceeEEEecC
Confidence 100 0000 1123444556666643 34333 446899999998875 678999999
Q ss_pred cc
Q 011237 353 HC 354 (490)
Q Consensus 353 ~l 354 (490)
--
T Consensus 179 Yn 180 (501)
T KOG1136|consen 179 YN 180 (501)
T ss_pred cc
Confidence 63
No 45
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=97.17 E-value=0.00065 Score=68.46 Aligned_cols=61 Identities=23% Similarity=0.337 Sum_probs=44.5
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHH------hCCCCEEEeChhhH
Q 011237 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQK------CNPDAILLAHENTM 297 (490)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~------~~p~a~I~~~~~~~ 297 (490)
++..|||||.+.. .++........++..|++||.|.||+. |+..+.. ......||.++...
T Consensus 29 ~~~~L~DcGeGt~--~~l~~~~~~~~~i~~IfITH~H~DHi~-----gL~~ll~~~~~~~~~~~l~iygP~g~~ 95 (292)
T COG1234 29 GEKFLFDCGEGTQ--HQLLRAGLPPRKIDAIFITHLHGDHIA-----GLPGLLVSRSFRGRREPLKIYGPPGIK 95 (292)
T ss_pred CeeEEEECCHhHH--HHHHHhcCChhhccEEEeeccccchhc-----CcHHHHHHhhccCCCCceeEECCcchh
Confidence 5688999998765 456665555667889999999999999 9886533 11235788886543
No 46
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=96.89 E-value=0.0011 Score=70.05 Aligned_cols=123 Identities=19% Similarity=0.247 Sum_probs=74.0
Q ss_pred eEEEe--cCCeEEEcCCCCChH--HHHH--HHHHHhCCCceEEEecCCCccccCchhhccHHHHHHh--CCCCEEEeChh
Q 011237 224 HRFVA--QGEALIVDPGCRSEF--HEEL--LKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKC--NPDAILLAHEN 295 (490)
Q Consensus 224 ~~~li--~g~~iLIDtG~~~~~--~~~L--~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~--~p~a~I~~~~~ 295 (490)
+|.++ +|+.++.|||.-+.. ...+ -.. .++..++.+++||+|.||++ .+.++.++ +.+ ++++...
T Consensus 28 SC~ile~kGk~iMld~gvhpaysg~aslpf~d~-vd~s~id~llIthFhldh~a-----slp~~~qkTsf~g-rvfmth~ 100 (668)
T KOG1137|consen 28 SCHILEYKGKTIMLDCGVHPAYSGMASLPFYDE-VDLSAIDPLLITHFHLDHAA-----SLPFTLQKTSFIG-RVFMTHP 100 (668)
T ss_pred eEEEEEecCeEEEeccccCccccccccccchhh-cccccccHHHHhhhhhhhcc-----cccceeeeccccc-eeEEecc
Confidence 44444 678999999965532 1111 111 13456678999999999999 89888653 223 4444322
Q ss_pred hHH---hhccC-----CCCC---------------CceecCCCceEEECCEEEEEEeCCCCCCCCeEEEEC--CCCEEEE
Q 011237 296 TMR---RIGKD-----DWSL---------------GYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--STNSLIV 350 (490)
Q Consensus 296 ~~~---~l~~~-----~~~~---------------~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~--~~~vLft 350 (490)
+.. .+... .... ...++.-.+.+++.|.++..++ .||--|...|.++ .-++||+
T Consensus 101 TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~-aGhVlgacMf~veiagv~lLyT 179 (668)
T KOG1137|consen 101 TKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYH-AGHVLGACMFMVEIAGVRLLYT 179 (668)
T ss_pred hHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeec-cchhhhheeeeeeeceEEEEec
Confidence 222 11110 0000 1122333445667787777777 8999999888876 3469999
Q ss_pred cccc
Q 011237 351 GDHC 354 (490)
Q Consensus 351 GD~l 354 (490)
||..
T Consensus 180 Gd~s 183 (668)
T KOG1137|consen 180 GDYS 183 (668)
T ss_pred cccc
Confidence 9985
No 47
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=96.86 E-value=0.00084 Score=66.77 Aligned_cols=54 Identities=20% Similarity=0.381 Sum_probs=36.3
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeC
Q 011237 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAH 293 (490)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~ 293 (490)
.+.++||+|+.... +..+. ....+.+||+||.|.||+. |+..|+..+ ...++..
T Consensus 40 ~~~~lid~g~~~~~--~~~~~--~~~~idai~~TH~H~DHi~-----Gl~~l~~~~-~~~~~~~ 93 (269)
T COG1235 40 VKTLLIDAGPDLRD--QGLRL--GVSDLDAILLTHEHSDHIQ-----GLDDLRRAY-TLPIYVN 93 (269)
T ss_pred ceeEEEecChhHHh--hhhcc--cccccCeEEEecccHHhhc-----ChHHHHHHh-cCCcccc
Confidence 34778999976431 11111 1246779999999999999 999998854 3444444
No 48
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=96.55 E-value=0.0093 Score=52.61 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=72.2
Q ss_pred CCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCee
Q 011237 14 LNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGV 93 (490)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l 93 (490)
+++.+|||+|++.+. ...|.||++.+++ +|. .++++..++.++.|+.+
T Consensus 10 ~~~~~~Llvk~~~~~------------~g~W~fPgG~ve~--gEt------------------~~eaa~REl~EEtGl~v 57 (132)
T cd04661 10 LDDTLVLLVQQKVGS------------QNHWILPQGKREE--GET------------------LRQTAERTLKELCGNNL 57 (132)
T ss_pred ccCcEEEEEEeecCC------------CCeeECCcccccC--CCC------------------HHHHHHHHHHHhhCCCc
Confidence 567799999986421 5789999999974 666 37889999999999976
Q ss_pred ccCcc--eeecc--cccCC--CCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHHHHHH
Q 011237 94 RDGGE--WKLWK--CVEEP--EFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCINCL 148 (490)
Q Consensus 94 ~~~~~--~~~~~--w~~~~--~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l~~~ 148 (490)
....+ .+.++ |..|. ..+......+.||.+.+-.|+ ..|.....|++.+++.+.+
T Consensus 58 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~~~~~e~~~~~W~~~~el~~~l 121 (132)
T cd04661 58 KAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFFKARYMSGQFELSQNQVDFKWLAKEELQKYL 121 (132)
T ss_pred eEEEEEecCcEEEEEecCcccccccCcccEEEEEEEEEecCccccCCCcceeEecCHHHHHhhc
Confidence 65321 12222 22221 001122356889999988876 4688899999999988754
No 49
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=96.51 E-value=0.011 Score=51.38 Aligned_cols=106 Identities=20% Similarity=0.327 Sum_probs=72.3
Q ss_pred ehhhcCC-CCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 7 ALILKNP-LNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 7 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
++||-+. .+..++||+|++. ..|.+|++.++. +|. ..++++.++
T Consensus 6 g~vi~~~~~~~~~vLl~~~~~---------------~~w~~PgG~ve~--gEs------------------~~~aa~REl 50 (130)
T cd03428 6 GAIIYRRLNNEIEYLLLQASY---------------GHWDFPKGHVEP--GED------------------DLEAALRET 50 (130)
T ss_pred EEEEEEecCCCceEEEEEccC---------------CcCcCCcCCCCC--CCC------------------HHHHHHHHH
Confidence 3444444 3345799998875 569999888763 444 257899999
Q ss_pred HHHcCCeeccCcce-eecccccCCCCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHHHHHHHH
Q 011237 86 LEQLGFGVRDGGEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSCINCLA 149 (490)
Q Consensus 86 l~~~gl~l~~~~~~-~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~l~~~~ 149 (490)
.++.|+.+....+. .+....... .....+.+.||++....++ +.|.....|++++++.+.+.
T Consensus 51 ~EEtGl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 117 (130)
T cd03428 51 EEETGITAEQLFIVLGFKETLNYQ--VRGKLKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLT 117 (130)
T ss_pred HHHHCCChhhhhhhccceeEEEcc--ccCcceEEEEEEEEeCCCCccccccceeeEEeecHHHHHHHcC
Confidence 99999988754442 122222212 2346788889999987554 35889999999999887654
No 50
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=96.43 E-value=0.03 Score=60.92 Aligned_cols=128 Identities=14% Similarity=0.184 Sum_probs=81.0
Q ss_pred CcceEEEecCCeEEEcCCCCChH-HHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHH-hCCCCEEEeChhhHH
Q 011237 221 CGNHRFVAQGEALIVDPGCRSEF-HEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQK-CNPDAILLAHENTMR 298 (490)
Q Consensus 221 ~~~~~~li~g~~iLIDtG~~~~~-~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~-~~p~a~I~~~~~~~~ 298 (490)
+.|+..-+.|-.+|||||++... .+.+..+......+.+|++||...-|+| |+.+... .+-+|+||++-....
T Consensus 15 ~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlG-----aLpY~~~k~gl~~~VYAT~PV~~ 89 (764)
T KOG1135|consen 15 PLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLG-----ALPYAVGKLGLNAPVYATLPVIK 89 (764)
T ss_pred cceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhc-----cchhhHhhCCccceEEEecchhh
Confidence 33333344566899999998775 3334444445567789999999999999 9988754 445689999765322
Q ss_pred --------hhcc-CC---CC-----------CCceecCCCceEEECC--EEEEEE-eCCCCCCCCeEEEEC--CCCEEEE
Q 011237 299 --------RIGK-DD---WS-----------LGYTSVSGSEDICVGG--QRLTVV-FSPGHTDGHVALLHA--STNSLIV 350 (490)
Q Consensus 299 --------~l~~-~~---~~-----------~~~~~~~~g~~l~lgg--~~l~vi-~tPGHT~g~i~l~~~--~~~vLft 350 (490)
.+.. .. +. ....+++-.+.+.+.| ..+.+. +-.||+.|-..+-+- .++++|+
T Consensus 90 mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~k~~E~ivYa 169 (764)
T KOG1135|consen 90 MGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKISKVGEDIVYA 169 (764)
T ss_pred hhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEEecCceEEEE
Confidence 1111 00 00 0124556666676644 234444 456899998765442 4678888
Q ss_pred ccc
Q 011237 351 GDH 353 (490)
Q Consensus 351 GD~ 353 (490)
=|.
T Consensus 170 vd~ 172 (764)
T KOG1135|consen 170 VDF 172 (764)
T ss_pred Eec
Confidence 875
No 51
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=96.32 E-value=0.021 Score=58.48 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=30.7
Q ss_pred CceEEEecCCCccccCchhhccHHHHHHhC-----CCCEEEeChhhHHhhccC
Q 011237 256 RKLIVFVTHHHRDHVDGEFIRGLSIIQKCN-----PDAILLAHENTMRRIGKD 303 (490)
Q Consensus 256 ~~~~IviTH~H~DH~G~a~~~G~~~l~~~~-----p~a~I~~~~~~~~~l~~~ 303 (490)
.+...+|||.|.||+. |+-.-.... ..-+||+.+.+.+.+++.
T Consensus 79 ~I~~ylItH~HLDHi~-----gLvinsp~~~~~~~~~K~i~gl~~ti~alk~h 126 (335)
T PF02112_consen 79 HIKGYLITHPHLDHIA-----GLVINSPEDYLPNSSPKTIYGLPSTIEALKNH 126 (335)
T ss_pred hhheEEecCCchhhHH-----HHHhcCcccccccCCCCcEEECHHHHHHHHHc
Confidence 3558999999999999 774321111 245799999998887653
No 52
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=96.29 E-value=0.016 Score=51.81 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=73.5
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHH
Q 011237 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (490)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (490)
.+|-|. +.++||+|+..+|+ +..|++|++.+++ +|. ..+++..++.+
T Consensus 18 ~vv~~~--~~~vLL~~r~~~~~-----------~~~w~lPgG~ve~--gEt------------------~~~aa~REl~E 64 (142)
T cd04700 18 AVILNE--RNDVLLVQEKGGPK-----------KGLWHIPSGAVED--GEF------------------PQDAAVREACE 64 (142)
T ss_pred EEEEeC--CCcEEEEEEcCCCC-----------CCeEECCceecCC--CCC------------------HHHHHHHHHHH
Confidence 344443 34899999866552 5789999999873 555 26789999999
Q ss_pred HcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc-----cccccccccCCHHHHHHHHHccC
Q 011237 88 QLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----QILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 88 ~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-----~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
+-|+.+.... +...|.... .....+-+.+|++.+..+. ..|.....|++++++.+++...+
T Consensus 65 EtGl~~~~~~--~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~ 130 (142)
T cd04700 65 ETGLRVRPVK--FLGTYLGRF--DDGVLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQGQ 130 (142)
T ss_pred hhCceeeccE--EEEEEEEEc--CCCcEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhcccccc
Confidence 9999886543 233332211 1123444678888875442 35788899999999998876654
No 53
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=96.13 E-value=0.037 Score=48.22 Aligned_cols=111 Identities=12% Similarity=0.099 Sum_probs=71.5
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
+.++-|-..+.++||+|+..+ ..+.|++|++.++. +|. ..++++.++.
T Consensus 5 ~v~~~~~~~~~~vLL~~r~~~------------~~~~w~~PgG~ve~--~Es------------------~~~aa~RE~~ 52 (129)
T cd04664 5 LVVPYRLTGEGRVLLLRRSDK------------YAGFWQSVTGGIED--GES------------------PAEAARREVA 52 (129)
T ss_pred EEEEEEeCCCCEEEEEEeCCC------------CCCcccccCcccCC--CCC------------------HHHHHHHHHH
Confidence 344444323569999998765 34689999988633 333 1678999999
Q ss_pred HHcCCeeccC-cceeecccccCCCCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHHHHHHHH
Q 011237 87 EQLGFGVRDG-GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSCINCLA 149 (490)
Q Consensus 87 ~~~gl~l~~~-~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~l~~~~ 149 (490)
++.|+..... .+.....|++...-..+....-.+|++.+..+. ..|.....|++++++.+.+.
T Consensus 53 EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 120 (129)
T cd04664 53 EETGLDPERLTLLDRGASIAFVEFTDNGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLL 120 (129)
T ss_pred HHHCCChhheEEEeecccccccccCCCceEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHc
Confidence 9999987433 233333232222102224555677888877653 45788999999999987643
No 54
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=96.12 E-value=0.037 Score=47.92 Aligned_cols=108 Identities=19% Similarity=0.309 Sum_probs=72.9
Q ss_pred ehhhcCCCC-CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 7 ALILKNPLN-DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 7 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
++||-|+.+ ..++||+|+... +.|+||++.++. +|. ..+++..++
T Consensus 5 ~~ii~~~~~~~~~vLl~~~~~~--------------~~w~~PgG~v~~--gEs------------------~~~aa~REl 50 (131)
T cd03673 5 GGVVFRGSDGGIEVLLIHRPRG--------------DDWSLPKGKLEP--GET------------------PPEAAVREV 50 (131)
T ss_pred EEEEEEccCCCeEEEEEEcCCC--------------CcccCCCCccCC--CCC------------------HHHHHHHHH
Confidence 445555532 358999998543 689999998864 333 267899999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc-----cccccccccCCHHHHHHHHH
Q 011237 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----QILQEGCKWMSTQSCINCLA 149 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-----~~e~~~~~W~~~~~~l~~~~ 149 (490)
.++.|+.........-.+|..+.. +......+.||++....++ ..|.....|++++++.+.+.
T Consensus 51 ~EEtGl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 118 (131)
T cd03673 51 EEETGIRAEVGDPLGTIRYWFSSS-GKRVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLS 118 (131)
T ss_pred hhhhCCceEecceEEEEEEeccCC-CCCcceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcC
Confidence 999999877544333223433321 2245677888888877654 45778899999999876543
No 55
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=96.03 E-value=0.029 Score=48.83 Aligned_cols=98 Identities=16% Similarity=0.153 Sum_probs=66.9
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
..++||+++... ..|.||++.++. +|. ..+++..++.++-|+....
T Consensus 14 ~~~vLLv~~~~~--------------~~w~~PgG~ve~--~E~------------------~~~aa~RE~~EEtG~~~~~ 59 (122)
T cd04666 14 EVEVLLVTSRRT--------------GRWIVPKGGPEK--DES------------------PAEAAAREAWEEAGVRGKI 59 (122)
T ss_pred ceEEEEEEecCC--------------CeEECCCCCcCC--CCC------------------HHHHHHHHHHHHhCCcccc
Confidence 458999998532 679999998855 343 2578899999999998765
Q ss_pred C--cceeecccccCCCCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHHHHHHHH
Q 011237 96 G--GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSCINCLA 149 (490)
Q Consensus 96 ~--~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~l~~~~ 149 (490)
. .+..+....+.. ..++.+...||.+..-... +.|.....|+++.+|++++.
T Consensus 60 ~~~~l~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~ 117 (122)
T cd04666 60 GKRPLGRFEYRKRSK--NRPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVE 117 (122)
T ss_pred cceEEEEEEeeecCC--CCCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcC
Confidence 4 333333322222 2346788888877653322 33556899999999988764
No 56
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=95.97 E-value=0.034 Score=48.92 Aligned_cols=109 Identities=21% Similarity=0.220 Sum_probs=74.1
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
.+++-|+. .++||+||.+++. .+..|++|++.++. +|. ..+++..++.
T Consensus 6 ~v~~~~~~--~~iLl~~~~~~~~----------~~~~w~~PgG~ve~--gEs------------------~~~aa~RE~~ 53 (137)
T cd03424 6 AVLPYDDD--GKVVLVRQYRPPV----------GGWLLELPAGLIDP--GED------------------PEEAARRELE 53 (137)
T ss_pred EEEEEcCC--CeEEEEEeeecCC----------CCEEEEeCCccCCC--CCC------------------HHHHHHHHHH
Confidence 34555554 4899999988875 34579999998887 444 2678999999
Q ss_pred HHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc------cccccccccCCHHHHHHHHHccC
Q 011237 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN------QILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 87 ~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q------~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
++.|+... .+.......... +. ...-+.+|++...... ..|.....|++++++.+.+...+
T Consensus 54 EE~Gl~~~--~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 120 (137)
T cd03424 54 EETGYEAG--DLEKLGSFYPSP--GF-SDERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADGE 120 (137)
T ss_pred HHHCCCcc--ceEEEeeEecCC--cc-cCccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcCC
Confidence 99999885 222222222222 21 2223556666666543 45888899999999999988765
No 57
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.88 E-value=0.04 Score=47.37 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=66.6
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccC
Q 011237 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (490)
.++||+|+...+.. ....|+||++.++. +|. ..+++..++.++.|+...
T Consensus 11 ~~vLL~rR~~~~~~---------~~g~w~lPgG~ve~--gE~------------------~~~aa~REl~EEtGl~~~-- 59 (117)
T cd04691 11 DKVLLERRSLTKNA---------DPGKLNIPGGHIEA--GES------------------QEEALLREVQEELGVDPL-- 59 (117)
T ss_pred CEEEEEEeCCCCCC---------CCCeEECcceeecC--CCC------------------HHHHHHHHHHHHHCCCcc--
Confidence 58999998765532 34679999999975 444 267789999999999842
Q ss_pred cceeecccccCCCCCCCCeeeEEEEEeEcCCCc--cccccccccCCHHHHHHHH
Q 011237 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSCINCL 148 (490)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--~~e~~~~~W~~~~~~l~~~ 148 (490)
.+..+.....+. ....-..||++...+|. ..|.....|++.+++....
T Consensus 60 ~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~~ 109 (117)
T cd04691 60 SYTYLCSLYHPT----SELQLLHYYVVTFWQGEIPAQEAAEVHWMTANDIVLAS 109 (117)
T ss_pred cceEEEEEeccC----CCeEEEEEEEEEEecCCCCcccccccEEcCHHHcchhh
Confidence 223333333333 23444567788777765 5688999999988876543
No 58
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=95.68 E-value=0.055 Score=48.47 Aligned_cols=108 Identities=17% Similarity=0.228 Sum_probs=74.5
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.+.+|.|.. .+.||+|...+|. ++.|.||++.++. +|. -.+++..++
T Consensus 15 v~~vI~~~~--g~vLl~~R~~~p~-----------~g~w~lPGG~ve~--gEs------------------~~~aa~RE~ 61 (144)
T cd03430 15 IDLIVENED--GQYLLGKRTNRPA-----------QGYWFVPGGRIRK--NET------------------LTEAFERIA 61 (144)
T ss_pred EEEEEEeCC--CeEEEEEccCCCC-----------CCcEECCCceecC--CCC------------------HHHHHHHHH
Confidence 466776652 4899988765442 2679999988865 444 267789999
Q ss_pred HHHcCCeeccC--c-ceeecccccCCCC--CCCCeeeEEEEEeEcCCCc----cccccccccCCHHHHHH
Q 011237 86 LEQLGFGVRDG--G-EWKLWKCVEEPEF--GPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 86 l~~~gl~l~~~--~-~~~~~~w~~~~~~--~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~l~ 146 (490)
.++.|+.+... . +..+.+..+...+ +....+...+|.+.+.++. +.|...++|+++++..+
T Consensus 62 ~EE~Gl~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 131 (144)
T cd03430 62 KDELGLEFLISDAELLGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLA 131 (144)
T ss_pred HHHHCCCcccccceEEEEEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhc
Confidence 99999998765 2 3334444332211 2344677888888887664 56899999999888764
No 59
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=95.67 E-value=0.018 Score=61.00 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=64.1
Q ss_pred CceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCC-CCC-CceecCCCceEEECCEEEEEEeCCCC
Q 011237 256 RKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDD-WSL-GYTSVSGSEDICVGGQRLTVVFSPGH 333 (490)
Q Consensus 256 ~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~-~~~-~~~~~~~g~~l~lgg~~l~vi~tPGH 333 (490)
+..+-|+||.|.||.. |+.---. ..++|++..++..+...- ... -...+.-++.+.+.+..+.++... |
T Consensus 112 ~~s~yFLsHFHSDHy~-----GL~~sW~---~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~~~i~~~~vt~ldAn-H 182 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYI-----GLTKSWS---HPPLYCSPITARLVPLKVSVTKQSIQALDLNQPLEIPGIQVTLLDAN-H 182 (481)
T ss_pred ccceeeeecccccccc-----ccccccc---CCcccccccchhhhhhhcccChhhceeecCCCceeecceEEEEeccc-c
Confidence 4568999999999999 7755422 234999988777654321 111 234577788888888777666544 9
Q ss_pred CCCCeEEEECC---CCEEEEcccc
Q 011237 334 TDGHVALLHAS---TNSLIVGDHC 354 (490)
Q Consensus 334 T~g~i~l~~~~---~~vLftGD~l 354 (490)
.||.++|+.+. ..+|.+||.=
T Consensus 183 CPGa~mf~F~~~~~~~~lhtGDFR 206 (481)
T KOG1361|consen 183 CPGAVMFLFELSFGPCILHTGDFR 206 (481)
T ss_pred CCCceEEEeecCCCceEEecCCcc
Confidence 99999998863 4799999973
No 60
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.65 E-value=0.067 Score=46.30 Aligned_cols=106 Identities=19% Similarity=0.286 Sum_probs=67.8
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.+++|.|+. .++||+|+.+ | ...|.||++.++. +|. ..+++..++
T Consensus 5 v~~~i~~~~--~~iLL~r~~~--------~-----~~~w~lPGG~ve~--gEs------------------~~~aa~REl 49 (125)
T cd04696 5 VGALIYAPD--GRILLVRTTK--------W-----RGLWGVPGGKVEW--GET------------------LEEALKREF 49 (125)
T ss_pred EEEEEECCC--CCEEEEEccC--------C-----CCcEeCCceeccC--CCC------------------HHHHHHHHH
Confidence 456777764 3899998641 1 3579999998865 343 267789999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHHHH
Q 011237 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l~ 146 (490)
.++.|+.+....+.....++....+..+..+=+..|.+....++ +.|...++|++.+++.+
T Consensus 50 ~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 113 (125)
T cd04696 50 REETGLKLRDIKFAMVQEAIFSEEFHKPAHFVLFDFFARTDGTEVTPNEEIVEWEWVTPEEALD 113 (125)
T ss_pred HHHhCCcccccceEEEEEEeccCCCCCccEEEEEEEEEEecCCcccCCcccceeEEECHHHHhc
Confidence 99999988765543332233333223333333344556665444 45888899999877654
No 61
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.55 E-value=0.053 Score=46.26 Aligned_cols=94 Identities=19% Similarity=0.336 Sum_probs=66.1
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccC
Q 011237 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (490)
.++||+|+.. +..|.+|++.+++ +|. ..+++..++.++.|+.....
T Consensus 12 ~~vLl~~r~~--------------~~~w~~PgG~ve~--~Es------------------~~~aa~REl~EEtGl~~~~~ 57 (118)
T cd04690 12 GRVLLVRKRG--------------TDVFYLPGGKIEA--GET------------------PLQALIRELSEELGLDLDPD 57 (118)
T ss_pred CeEEEEEECC--------------CCcEECCCCccCC--CCC------------------HHHHHHHHHHHHHCCccChh
Confidence 3999999852 2469999977754 333 25678999999999987764
Q ss_pred cceeecccccCCCCCCCCeeeEEEEEeEcCCCc--cccccccccCCHHHH
Q 011237 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSC 144 (490)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--~~e~~~~~W~~~~~~ 144 (490)
.+.....+..+....+.....+.+|++...... ..|.....|++++++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~~~~W~~~~e~ 107 (118)
T cd04690 58 SLEYLGTFRAPAANEPGVDVRATVYVAELTGEPVPAAEIEEIRWVDYDDP 107 (118)
T ss_pred heEEEEEEecccccCCCcEEEEEEEEEcccCCcCCCchhhccEEecHHHc
Confidence 455555554443223335778889998876533 458888999998876
No 62
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=95.53 E-value=0.052 Score=48.81 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=66.9
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.++||-|.. +..+||+||..++ .|.||++.++ .+|. ..+++..++
T Consensus 4 ~gaii~~~~-~~~vLLvr~~~~~--------------~W~lPGG~ve--~gEs------------------~~~AA~REl 48 (145)
T cd03672 4 YGAIILNED-LDKVLLVKGWKSK--------------SWSFPKGKIN--KDED------------------DHDCAIREV 48 (145)
T ss_pred eEEEEEeCC-CCEEEEEEecCCC--------------CEECCCccCC--CCcC------------------HHHHHHHHH
Confidence 356666654 3489999986432 6999999886 3444 257788999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCC-----c-cccccccccCCHHHHHHHHHcc
Q 011237 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----N-QILQEGCKWMSTQSCINCLAEV 151 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~-----q-~~e~~~~~W~~~~~~l~~~~~~ 151 (490)
.++-|+.+..-. ....++... .....-+.||+...+.. + ..|...+.|++++++.+.....
T Consensus 49 ~EETGl~v~~~~--~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~ 115 (145)
T cd03672 49 YEETGFDISKYI--DKDDYIELI---IRGQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKK 115 (145)
T ss_pred HHhhCccceecc--ccceeeecc---cCCcEEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhc
Confidence 999999866421 111222221 11222344555444321 1 3588899999999999887765
No 63
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=95.53 E-value=0.042 Score=49.99 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=68.8
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccC-cCCCCccccccccccccccchhhhHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQG-EKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.+++.+..++.++||+|+++.++ ..+..|.+|++.+.. + |. ..+++..++
T Consensus 6 ~v~l~~~~~~~~vLL~~R~~~~~---------~~~g~w~lPGG~ve~--gdEs------------------~~eaa~REl 56 (157)
T cd03426 6 LVLLVEREGELRVLLTKRASHLR---------SHPGQVAFPGGKVDP--GDED------------------PVATALREA 56 (157)
T ss_pred EEEEEeCCCceEEEEEEcccccc---------cCCCcEECCCCCcCC--CcCC------------------HHHHHHHHH
Confidence 45666666667999999887654 245679999988875 3 33 267899999
Q ss_pred HHHcCCeeccCccee-ecccccCCCCCCCCeeeEEEEEeEcCCCc-----cccccccccCCHHHHHH
Q 011237 86 LEQLGFGVRDGGEWK-LWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 86 l~~~gl~l~~~~~~~-~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-----~~e~~~~~W~~~~~~l~ 146 (490)
.++.|+.+..-.+.. +..+.+. ..+...+|++.....+ ..|.....|++++++.+
T Consensus 57 ~EEtGl~~~~~~~l~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 117 (157)
T cd03426 57 EEEIGLPPDSVEVLGRLPPYYTR------SGFVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLD 117 (157)
T ss_pred HHHhCCCccceEEEEECCCcccc------CCCEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhC
Confidence 999999876422221 1111111 1344455666654432 35888999999888776
No 64
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.50 E-value=0.066 Score=46.31 Aligned_cols=105 Identities=16% Similarity=0.233 Sum_probs=70.3
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
+++|-|+. .+.||+|+...|+ +..|.||++.++. +|. ..+++..++.
T Consensus 6 ~~~i~~~~--~~vLL~~r~~~~~-----------~~~w~lPgG~ve~--gEt------------------~~eaa~RE~~ 52 (125)
T cd04679 6 GAAILRDD--GKLLLVKRLRAPE-----------AGHWGIPGGKVDW--MEA------------------VEDAVVREIE 52 (125)
T ss_pred EEEEECCC--CEEEEEEecCCCC-----------CCeEeCCeeeccC--CCC------------------HHHHHHHHHH
Confidence 44555543 4899999875432 3689999999875 444 2578899999
Q ss_pred HHcCCeeccCcce-eecccccCCCCCCCCeeeEEEEEeEcCCCc-----cccccccccCCHHHHHHHH
Q 011237 87 EQLGFGVRDGGEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----QILQEGCKWMSTQSCINCL 148 (490)
Q Consensus 87 ~~~gl~l~~~~~~-~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-----~~e~~~~~W~~~~~~l~~~ 148 (490)
++.|+.+....+. .+.++.+ ..+.++-+.+|++....++ ..|...+.|++++++.+.+
T Consensus 53 EEtGl~~~~~~~~~~~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l 116 (125)
T cd04679 53 EETGLSIHSTRLLCVVDHIIE----EPPQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPL 116 (125)
T ss_pred HHHCCCcccceEEEEEeeccc----CCCCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchh
Confidence 9999988654432 2233322 2345666778888776654 3477889999988775533
No 65
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.45 E-value=0.057 Score=46.78 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=69.4
Q ss_pred ceeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHH
Q 011237 4 YNVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALN 83 (490)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (490)
+|..+||-+ +.++||+|+.. ...|.||++.++. +|. -.+++..
T Consensus 2 ~~v~~vi~~---~~~vLl~~~~~--------------~~~w~lPgG~ve~--gEs------------------~~~aa~R 44 (126)
T cd04688 2 VRAAAIIIH---NGKLLVQKNPD--------------ETFYRPPGGGIEF--GES------------------SEEALIR 44 (126)
T ss_pred eEEEEEEEE---CCEEEEEEeCC--------------CCeEECCCccccC--CCC------------------HHHHHHH
Confidence 455555542 23899998653 4689999988874 444 2677899
Q ss_pred HHHHHcCCeeccCcc-eeecccccCCCCCCCCeeeEEEEEeEcCCCcc-----------ccccccccCCHHHHH
Q 011237 84 QILEQLGFGVRDGGE-WKLWKCVEEPEFGPGLTIHTVYIMGKLLDGNQ-----------ILQEGCKWMSTQSCI 145 (490)
Q Consensus 84 ~~l~~~gl~l~~~~~-~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q~-----------~e~~~~~W~~~~~~l 145 (490)
++.++.|+......+ ..+.+..+.. +.....-+.||.+.++.+.. .|.....|++++++.
T Consensus 45 E~~EEtGl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~ 116 (126)
T cd04688 45 EFKEELGLKIEITRLLGVVENIFTYN--GKPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELK 116 (126)
T ss_pred HHHHHhCCceecceeeEEEEEeeccC--CcccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcc
Confidence 999999998765443 3333333333 33345557888888877662 367789999987665
No 66
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.30 E-value=0.065 Score=45.90 Aligned_cols=101 Identities=15% Similarity=0.190 Sum_probs=63.4
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccC
Q 011237 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (490)
.+.||+|+...+. .+..|++|++.+.. +|. . .+++..++.++.|+.+...
T Consensus 11 ~~vLL~~r~~~~~----------~~~~w~lPgG~ve~--gE~-----------------~-~~aa~REl~EEtGl~v~~~ 60 (120)
T cd04683 11 DEVLLQRRANTGY----------MDGQWALPAGHLEK--GED-----------------A-VTAAVREAREEIGVTLDPE 60 (120)
T ss_pred CEEEEEEccCCCC----------CCCeEeCCccccCC--CCC-----------------H-HHHHHHHHHHHHCCccChh
Confidence 4899999875321 25689999998864 554 2 4578899999999988754
Q ss_pred cceeecccccCCCCCCCCeeeEEEEEeEcCCCc-----cccccccccCCHHHHHHHHH
Q 011237 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----QILQEGCKWMSTQSCINCLA 149 (490)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-----~~e~~~~~W~~~~~~l~~~~ 149 (490)
.+.....+.... +.....=..||++....+. ..|.....|+++++..+.++
T Consensus 61 ~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 61 DLRLAHTMHRRT--EDIESRIGLFFTVRRWSGEPRNCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred heEEEEEEEecC--CCCceEEEEEEEEEeecCccccCCCCcEeeEEEEchHHCcchhc
Confidence 433322222222 1112333456666543332 35677899999888766554
No 67
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.29 E-value=0.079 Score=46.06 Aligned_cols=105 Identities=16% Similarity=0.210 Sum_probs=68.4
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHH
Q 011237 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (490)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (490)
+.++||.+ +.++||+|+..++ +..|.+|++.++. +|. ..+++..+
T Consensus 3 ~a~~iv~~---~~~vLl~~r~~~~------------~~~~~lPGG~ve~--gEt------------------~~~aa~RE 47 (128)
T cd04687 3 SAKAVIIK---NDKILLIKHHDDG------------GVWYILPGGGQEP--GET------------------LEDAAHRE 47 (128)
T ss_pred EEEEEEEE---CCEEEEEEEEcCC------------CCeEECCCcccCC--CCC------------------HHHHHHHH
Confidence 34555553 3599999985432 2469999998865 444 26789999
Q ss_pred HHHHcCCeeccCcceeecccccCC-CC--CCCCeeeEEEEEeEcCCCc--------cccccccccCCHHHH
Q 011237 85 ILEQLGFGVRDGGEWKLWKCVEEP-EF--GPGLTIHTVYIMGKLLDGN--------QILQEGCKWMSTQSC 144 (490)
Q Consensus 85 ~l~~~gl~l~~~~~~~~~~w~~~~-~~--~~~~~~dt~f~~a~lp~~q--------~~e~~~~~W~~~~~~ 144 (490)
+.++.|+.+....+.....++... .. +.....-+.||++.++.+. +.+...+.|++.+++
T Consensus 48 ~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l 118 (128)
T cd04687 48 CKEEIGIDVEIGPLLFVREYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKEL 118 (128)
T ss_pred HHHHHCCccccCcEEEEEEEeccCccccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHh
Confidence 999999999876554444443221 00 1122334467888887664 234568999998875
No 68
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=95.29 E-value=0.095 Score=46.87 Aligned_cols=104 Identities=17% Similarity=0.308 Sum_probs=66.7
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.+.+|-|+. .++||+|+... .+.|++|++.++. +|. ..+++..++
T Consensus 10 v~~vi~~~~--~~vLl~~r~~~-------------~~~W~lPgG~ve~--gEs------------------~~~aa~REl 54 (148)
T PRK09438 10 VLVVIYTPD--LGVLMLQRADD-------------PDFWQSVTGSLEE--GET------------------PAQTAIREV 54 (148)
T ss_pred EEEEEEeCC--CeEEEEEecCC-------------CCcEeCCcccCCC--CCC------------------HHHHHHHHH
Confidence 344555543 37999988542 2579999998764 554 267899999
Q ss_pred HHHcCCeeccCcceeecccc------------c--CCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHHHHHH
Q 011237 86 LEQLGFGVRDGGEWKLWKCV------------E--EPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCINCL 148 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~------------~--~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l~~~ 148 (490)
.++.|+......+. +..|. . ++ +. ...-..+|.+....++ .+|.....|++++++.+..
T Consensus 55 ~EEtGl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 130 (148)
T PRK09438 55 KEETGIDVLAEQLT-LIDCQRSIEYEIFPHWRHRYAP--GV-TRNTEHWFCLALPHERPVVLTEHLAYQWLDAREAAALT 130 (148)
T ss_pred HHHhCcCcccccee-ecccccccccccchhhhhcccc--cc-CCceeEEEEEecCCCCccccCcccceeeCCHHHHHHHh
Confidence 99999987332211 11111 1 11 11 1233456667766554 4599999999999998864
No 69
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=95.16 E-value=0.088 Score=45.32 Aligned_cols=99 Identities=21% Similarity=0.362 Sum_probs=65.4
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccC
Q 011237 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (490)
.++||+|+..+| + ...|.+|++.+.. +|. ..+++..++.++.|+.+...
T Consensus 11 ~~vLl~~~~~~~-~----------~~~w~lPgG~ve~--gE~------------------~~~aa~RE~~EEtGl~~~~~ 59 (128)
T cd04684 11 GKLLLIQKNGGP-Y----------EGRWDLPGGGIEP--GES------------------PEEALHREVLEETGLTVEIG 59 (128)
T ss_pred CEEEEEEccCCC-C----------CCeEECCCcccCC--CCC------------------HHHHHHHHHHHHhCcEeecc
Confidence 589999998775 2 3569999999875 454 26789999999999988754
Q ss_pred cceeecccccCCCCCC-CCeeeEEEEEeEcCCCc------cccccccccCCHHHHHH
Q 011237 97 GEWKLWKCVEEPEFGP-GLTIHTVYIMGKLLDGN------QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 97 ~~~~~~~w~~~~~~~~-~~~~dt~f~~a~lp~~q------~~e~~~~~W~~~~~~l~ 146 (490)
.......+..+..... ....-+.+|.+....+. ..|.....|++++++.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~ 116 (128)
T cd04684 60 RRLGSASRYFYSPDGDYDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIE 116 (128)
T ss_pred eeeeEEEEEEECCCCCeeccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhc
Confidence 4332223332220011 11344567777776654 34678899999888764
No 70
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.05 E-value=0.12 Score=44.86 Aligned_cols=106 Identities=24% Similarity=0.349 Sum_probs=72.5
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.++||.|+. .++||+|...+| .+..|++|++..+. +|. ..+++..++
T Consensus 5 v~~ii~~~~--~~iLl~~r~~~~-----------~~~~w~~PGG~ve~--gEt------------------~~~Aa~REl 51 (129)
T cd04678 5 VGVFVLNPK--GKVLLGKRKGSH-----------GAGTWALPGGHLEF--GES------------------FEECAAREV 51 (129)
T ss_pred EEEEEECCC--CeEEEEeccCCC-----------CCCeEECCcccccC--CCC------------------HHHHHHHHH
Confidence 466777775 379999876542 36789999977642 333 257788999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCcc-------ccccccccCCHHHHHHH
Q 011237 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGNQ-------ILQEGCKWMSTQSCINC 147 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q~-------~e~~~~~W~~~~~~l~~ 147 (490)
.++.|+.+............. + +....+-+.||.+....++. .|...++|+++++..+.
T Consensus 52 ~EE~Gl~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 52 LEETGLHIENVQFLTVTNDVF-E--EEGKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred HHHhCCcccceEEEEEEeEEe-C--CCCcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 999999877644333332222 2 34568899999999988761 24556799998887653
No 71
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=95.03 E-value=0.074 Score=46.68 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=68.7
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccC
Q 011237 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (490)
.++||+|++..| ..+.|.+|++.++. +|. ..+++..++.++.|+.+...
T Consensus 12 ~~vLL~~r~~~~-----------~~~~w~~PgG~ve~--gEs------------------~~~aa~RE~~EEtGl~~~~~ 60 (137)
T cd03427 12 DKVLLLNRKKGP-----------GWGGWNGPGGKVEP--GET------------------PEECAIRELKEETGLTIDNL 60 (137)
T ss_pred CEEEEEEecCCC-----------CCCeEeCCceeCCC--CCC------------------HHHHHHHHHHHhhCeEeecc
Confidence 489998887654 24569999988864 333 25778999999999998866
Q ss_pred cceeecccccCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHHHH
Q 011237 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l~ 146 (490)
.+.....|..+. ...+..+.+|++....++ .+|.....|++.+++.+
T Consensus 61 ~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~e~~~~~W~~~~el~~ 110 (137)
T cd03427 61 KLVGIIKFPFPG---EEERYGVFVFLATEFEGEPLKESEEGILDWFDIDDLPL 110 (137)
T ss_pred eEEEEEEEEcCC---CCcEEEEEEEEECCcccccCCCCccccceEEcHhhccc
Confidence 655444443322 246788888998877766 45777899999887543
No 72
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=94.97 E-value=0.14 Score=44.38 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=70.7
Q ss_pred hhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCC-ccccccccCcCCCCccccccccccccccchhhhHHHHHHH
Q 011237 9 ILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLP-AIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (490)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (490)
++-|+. .+.||.|++.... .-...|++| ++.++. +|. . +++..++.+
T Consensus 6 ~~~~~~--g~vLl~~R~~~~~---------~~pg~w~~p~GG~ve~--gE~-----------------~--~aa~REl~E 53 (127)
T cd04693 6 CIFNSK--GELLLQKRSPNKD---------GWPGMWDLSVGGHVQA--GET-----------------S--TAAEREVKE 53 (127)
T ss_pred EEEeCC--CeEEEEEccCCCC---------CCCCcccccCCCcCCC--CCC-----------------H--HHHHHHHHH
Confidence 444443 3788877664221 113579998 666653 555 3 788999999
Q ss_pred HcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHHHHHHHHccC
Q 011237 88 QLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 88 ~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
+.|+.+....+..+..+.-+. +..-+..+|.+....++ ..|.....|++++++.+++.+++
T Consensus 54 EtGl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 118 (127)
T cd04693 54 ELGLELDFSELRPLFRYFFEA----EGFDDYYLFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIGHGE 118 (127)
T ss_pred HhCCCcChhhcEEEEEEEeec----CCeEEEEEEEecCcccccccCHHHhhhEEEeCHHHHHHHHhcCC
Confidence 999998876666555554333 12234445555544433 45788899999999999998776
No 73
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=94.95 E-value=0.064 Score=50.33 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=74.8
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+||-++|-+... + +.-+|.+|++.++ .+|. . .+++..++.++-|+...
T Consensus 56 ~~~vlLvrq~R~~~~~~~-~----~~~~lelPaG~ve--~gE~-----------------~-~~aA~REl~EEtG~~~~- 109 (185)
T TIGR00052 56 KDTVVLIEQFRIAAYVNG-E----EPWLLELSAGMVE--KGES-----------------P-EDVARREAIEEAGYQVK- 109 (185)
T ss_pred CCEEEEEECceeeeeecC-C----cceEEEECcEecC--CCCC-----------------H-HHHHHHHccccccceec-
Confidence 459999999999864221 0 2358999999987 3444 2 67799999999999874
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc--------cccccccccCCHHHHHHHHHccC
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--------QILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--------~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
.+.....+.+.+ +.. .--+++|+|....++ +.|.....|++..++++++.+++
T Consensus 110 -~~~~~~~~~~~~--g~~-~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~ 170 (185)
T TIGR00052 110 -NLRKLLSFYSSP--GGV-TELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGK 170 (185)
T ss_pred -ceEEEEEEEcCC--CCC-cEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCC
Confidence 334444444444 322 344667788754432 35667889999999999998875
No 74
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=94.86 E-value=0.12 Score=44.62 Aligned_cols=94 Identities=16% Similarity=0.273 Sum_probs=64.4
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccC
Q 011237 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (490)
.+.||+||.. ...|++|++.+.. +|. ..+++..++.++.|+.+...
T Consensus 13 ~~vLL~~~~~--------------~~~w~~PGG~ve~--gEs------------------~~~aa~REl~EEtG~~~~~~ 58 (123)
T cd04672 13 GKILLVREKS--------------DGLWSLPGGWADV--GLS------------------PAENVVKEVKEETGLDVKVR 58 (123)
T ss_pred CEEEEEEEcC--------------CCcEeCCccccCC--CCC------------------HHHHHHHHHHHHhCCeeeEe
Confidence 4899999965 3579999988853 343 36779999999999988766
Q ss_pred cceeecccccCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHH
Q 011237 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSC 144 (490)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~ 144 (490)
.+..+.........+.+..+=..||++....++ ..|.....|+++++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el 109 (123)
T cd04672 59 KLAAVDDRNKHHPPPQPYQVYKLFFLCEILGGEFKPNIETSEVGFFALDDL 109 (123)
T ss_pred EEEEEeccccccCCCCceEEEEEEEEEEecCCcccCCCceeeeEEECHHHC
Confidence 665555443322101222333457788877665 457888999998874
No 75
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=94.77 E-value=0.16 Score=44.40 Aligned_cols=98 Identities=16% Similarity=0.243 Sum_probs=63.6
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|++.. + ...|.+|++.++ .+|. ..+++..++.++.|+....
T Consensus 13 ~~~vLl~~r~~~--~----------~g~w~~PgG~ve--~gEs------------------~~~aa~RE~~EEtGl~~~~ 60 (131)
T cd04695 13 ETKVLLLKRVKT--L----------GGFWCHVAGGVE--AGET------------------AWQAALRELKEETGISLPE 60 (131)
T ss_pred CCEEEEEEecCC--C----------CCcEECCccccc--CCCC------------------HHHHHHHHHHHHhCCCccc
Confidence 558999998754 1 245999988876 3444 2678999999999998753
Q ss_pred Cccee-ecccccCCCCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHHHHHHH
Q 011237 96 GGEWK-LWKCVEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSCINCL 148 (490)
Q Consensus 96 ~~~~~-~~~w~~~~~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~l~~~ 148 (490)
-...- +-+..+.. ..+.+...+|++....+. +.|.....|++.+++++..
T Consensus 61 ~~~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 115 (131)
T cd04695 61 LYNADYLEQFYEAN---DNRILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELA 115 (131)
T ss_pred cccccceeeEeecC---CceEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHhc
Confidence 22111 11212222 123344556777765443 4688999999999988753
No 76
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=94.47 E-value=0.18 Score=46.06 Aligned_cols=107 Identities=16% Similarity=0.270 Sum_probs=71.1
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
++.+|.|. ..++||+|...+|. .+.|.||++.++. +|. ..+++..++
T Consensus 20 v~~vI~~~--~g~VLL~kR~~~~~-----------~g~W~lPGG~VE~--GEt------------------~~~Aa~REl 66 (159)
T PRK15434 20 LDFIVENS--RGEFLLGKRTNRPA-----------QGYWFVPGGRVQK--DET------------------LEAAFERLT 66 (159)
T ss_pred EEEEEECC--CCEEEEEEccCCCC-----------CCcEECCceecCC--CCC------------------HHHHHHHHH
Confidence 45677765 34899988764331 2789999999854 454 267789999
Q ss_pred HHHcCCeecc---CcceeecccccCCCC-CC--CCeeeEEEEEeEcCCCc----cccccccccCCHHHHHH
Q 011237 86 LEQLGFGVRD---GGEWKLWKCVEEPEF-GP--GLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 86 l~~~gl~l~~---~~~~~~~~w~~~~~~-~~--~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~l~ 146 (490)
.++.|+.+.. ..+.-+-+..... | +. ...|-+.+|.+....|. ..|....+|++++++++
T Consensus 67 ~EEtGl~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~ 136 (159)
T PRK15434 67 MAELGLRLPITAGQFYGVWQHFYDDN-FSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLA 136 (159)
T ss_pred HHHHCCccccccceEEEEEEeecccc-cCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhh
Confidence 9999998643 2222222222211 1 11 33567778888877665 35788999999999876
No 77
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=94.44 E-value=0.22 Score=43.52 Aligned_cols=99 Identities=22% Similarity=0.320 Sum_probs=70.4
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|+..++ ...|.+|++.+.+ +|. ..+++..++.++.|+.+..
T Consensus 10 ~~~vLlv~r~~~~------------~~~w~~PgG~ve~--gEs------------------~~~aa~REl~EEtGl~~~~ 57 (134)
T cd03675 10 DGRFLLVEEETDG------------GLVFNQPAGHLEP--GES------------------LIEAAVRETLEETGWHVEP 57 (134)
T ss_pred CCEEEEEEEccCC------------CceEECCCccCCC--CCC------------------HHHHHHHHHHHHHCccccc
Confidence 3589999986552 3579999998865 454 2578999999999999876
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc-----cccccccccCCHHHHHHHHH
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----QILQEGCKWMSTQSCINCLA 149 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-----~~e~~~~~W~~~~~~l~~~~ 149 (490)
..+.....+..+. ....+...+|++.+..+. ..|...+.|++++++.+...
T Consensus 58 ~~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~ 113 (134)
T cd03675 58 TALLGIYQWTAPD---SDTTYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLEEILALAA 113 (134)
T ss_pred ceEEEEEEeecCC---CCeeEEEEEEEEEECCCCCCCCCCCCceeeEEEeHHHHHhhhh
Confidence 5554443333322 234667777888877653 34677899999998887765
No 78
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=94.23 E-value=0.18 Score=42.37 Aligned_cols=103 Identities=17% Similarity=0.311 Sum_probs=69.6
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
++++.|.. .++||+|++.. .+..|++|++.++. ++. -...+..++.
T Consensus 4 ~~i~~~~~--~~ill~kr~~~------------~~~~~~~p~G~~~~--~e~------------------~~~~a~RE~~ 49 (123)
T cd02883 4 GAVILDED--GRVLLVRRADS------------PGGLWELPGGGVEP--GET------------------LEEAAIREVR 49 (123)
T ss_pred EEEEECCC--CCEEEEEEcCC------------CCCeEeCCcccccC--CCC------------------HHHHHHHHHH
Confidence 45566554 48999998876 36789999987664 222 2467889999
Q ss_pred HHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCcc-----ccccccccCCHHHHHH
Q 011237 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGNQ-----ILQEGCKWMSTQSCIN 146 (490)
Q Consensus 87 ~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q~-----~e~~~~~W~~~~~~l~ 146 (490)
++.|+..........-....+. ..+..-..+|.+..+.++. .|.....|+++.++.+
T Consensus 50 EE~Gl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~ 111 (123)
T cd02883 50 EETGLDVDVLRLLGVYEVESPD---EGEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPA 111 (123)
T ss_pred HhhCccceeeeEEEEEEeeccC---CCceEEEEEEEEEeCCCCcCCCCCCccceEEEEcHHHCcc
Confidence 9999987633222222222211 2467777788888877653 6777889999888775
No 79
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=94.17 E-value=0.23 Score=47.35 Aligned_cols=106 Identities=17% Similarity=0.232 Sum_probs=75.2
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccC
Q 011237 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (490)
.+++|+||-++|-.... .+.-+|-+|++.++ .+|. ..+++..++.++-|+...
T Consensus 62 ~~vlLvrQyR~~~~~~~-----~~~~~lE~PAG~vd--~gE~------------------p~~aA~REL~EETGy~a~-- 114 (202)
T PRK10729 62 DEVVLIEQIRIAAYDTS-----ETPWLLEMVAGMIE--EGES------------------VEDVARREAIEEAGLIVG-- 114 (202)
T ss_pred CEEEEEEeeecccccCC-----CCCeEEEccceEcC--CCCC------------------HHHHHHHHHHHHhCceee--
Confidence 49999999999975321 22356999999998 3555 257789999999999854
Q ss_pred cceeecccccCCCCCCCCeeeEEEEEeEc----CCC--c---cccccccccCCHHHHHHHHHccC
Q 011237 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKL----LDG--N---QILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~~~dt~f~~a~l----p~~--q---~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
.+.++....+.+ |- ...-+++|+|.. +.+ | ++|.....|++..++++++.+++
T Consensus 115 ~~~~l~~~~~sp--g~-~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~ 176 (202)
T PRK10729 115 RTKPVLSYLASP--GG-TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGK 176 (202)
T ss_pred EEEEEEEEEcCC--Cc-CceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCC
Confidence 344444444444 32 356678888873 111 2 46777899999999999998775
No 80
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=94.09 E-value=0.22 Score=42.39 Aligned_cols=100 Identities=19% Similarity=0.244 Sum_probs=64.0
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
..++|.|+. .++||+|+..++ .|++|++.++. +|. ..+++..++
T Consensus 3 ~~~~i~~~~--~~vLL~~r~~~~--------------~w~~PgG~ve~--gEt------------------~~~aa~REl 46 (120)
T cd04680 3 ARAVVTDAD--GRVLLVRHTYGP--------------GWYLPGGGLER--GET------------------FAEAARREL 46 (120)
T ss_pred eEEEEECCC--CeEEEEEECCCC--------------cEeCCCCcCCC--CCC------------------HHHHHHHHH
Confidence 345666664 389999986433 79999987653 444 267889999
Q ss_pred HHHcCCeec-cCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHHHHH
Q 011237 86 LEQLGFGVR-DGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 86 l~~~gl~l~-~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~l~ 146 (490)
.++.|+... ... .+..+.... ..... ...+|.+..-.+. ..|.....|++++++.+
T Consensus 47 ~EEtG~~~~~~~~--~~~~~~~~~--~~~~~-~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~ 107 (120)
T cd04680 47 LEELGIRLAVVAE--LLGVYYHSA--SGSWD-HVIVFRARADTQPVIRPSHEISEARFFPPDALPE 107 (120)
T ss_pred HHHHCCccccccc--eEEEEecCC--CCCce-EEEEEEecccCCCccCCcccEEEEEEECHHHCcc
Confidence 999999876 333 333333222 22233 3455555554432 46888999999887644
No 81
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=94.05 E-value=0.32 Score=41.87 Aligned_cols=98 Identities=16% Similarity=0.262 Sum_probs=65.3
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccC
Q 011237 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (490)
.+.||+|+...|+-. -...|++|++.++. +|. ..+++..++.++.|+.+...
T Consensus 12 g~vLl~~r~~~~~~~--------~~g~w~~PgG~ve~--gE~------------------~~~aa~RE~~EE~Gl~~~~~ 63 (122)
T cd04682 12 GRLLLQLRDDKPGIP--------YPGHWDLPGGHREG--GET------------------PLECVLRELLEEIGLTLPES 63 (122)
T ss_pred CEEEEEEccCCCCCC--------CCCcEeCCCccccC--CCC------------------HHHHHHHHHHHHhCCccccc
Confidence 489999998877632 24589999998874 444 25678899999999987643
Q ss_pred cceeecccccCCCCCCCCeeeEEEEEeEcCCCc-----cccccccccCCHHHHHHH
Q 011237 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----QILQEGCKWMSTQSCINC 147 (490)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-----~~e~~~~~W~~~~~~l~~ 147 (490)
.+ .+.+-.... ...-..++|++.+.++. ..|.....|+++++..+.
T Consensus 64 ~~-~~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 114 (122)
T cd04682 64 RI-PWFRVYPSA----SPPGTEHVFVVPLTAREDAILFGDEGQALRLMTVEEFLAH 114 (122)
T ss_pred cc-ceeEecccC----CCCceEEEEEEEEecCCCccccCchhheeecccHHHHhhc
Confidence 32 122211111 12334566777666542 568889999999888665
No 82
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=93.90 E-value=0.54 Score=46.97 Aligned_cols=122 Identities=15% Similarity=0.070 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCh-HHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCC---C
Q 011237 230 GEALIVDPGCRSE-FHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDD---W 305 (490)
Q Consensus 230 g~~iLIDtG~~~~-~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~---~ 305 (490)
|+.+|..+-...+ ..+.+.++..+.+.+++|+.--...-|.- -+..++++||+|++++.+.....-.+.. .
T Consensus 30 G~L~VhSPvapT~el~~~l~~L~~~~G~VkyIVaPn~~lEH~l-----fl~~w~~afP~A~v~~~Pg~~s~p~~lp~~~~ 104 (285)
T PF14234_consen 30 GGLWVHSPVAPTPELKAELDELEAQHGPVKYIVAPNKGLEHHL-----FLGPWARAFPDAKVWAPPGQWSFPLNLPLSWL 104 (285)
T ss_pred CCEEEECCCCCCHHHHHHHHHHhccCCceeEEEcCCcchhHHH-----hHHHHHHHCCCCEEEeCCCcccccccCchhhc
Confidence 4455666554433 33344444334488999988655445666 6889999999999999876432110000 0
Q ss_pred CCCc-eec-CCCceEEEC-CEEEEEE---eCCCCCCCCeEEEECCCCEEEEccccCC
Q 011237 306 SLGY-TSV-SGSEDICVG-GQRLTVV---FSPGHTDGHVALLHASTNSLIVGDHCVG 356 (490)
Q Consensus 306 ~~~~-~~~-~~g~~l~lg-g~~l~vi---~tPGHT~g~i~l~~~~~~vLftGD~l~~ 356 (490)
.... ..+ .+.....++ +...+++ ...+|.-..++|++...+.|+..|+++.
T Consensus 105 g~~~~~~l~~~~~~~pw~~eid~~~l~~~~lg~~~~~EvvFfHk~SkTLIvTDll~n 161 (285)
T PF14234_consen 105 GIPRDKTLPDDSDPPPWADEIDQEILGPLDLGSGPFQEVVFFHKPSKTLIVTDLLFN 161 (285)
T ss_pred CCccccccccccCCCCchhheeeEEecccccCCCceeEEEEEECCCCeEEhhhchhh
Confidence 0000 011 111111121 2223333 4456888899999999999999999864
No 83
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=93.85 E-value=0.26 Score=41.95 Aligned_cols=100 Identities=23% Similarity=0.415 Sum_probs=64.8
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccC
Q 011237 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (490)
.++||+|+...| .+..|.+|++.++. +|. ..+++..++.++.|+.....
T Consensus 11 ~~vLl~~r~~~~-----------~~~~w~~PgG~ie~--gE~------------------~~~aa~RE~~EEtGl~~~~~ 59 (122)
T cd04673 11 GRVLLVRRANPP-----------DAGLWSFPGGKVEL--GET------------------LEQAALRELLEETGLEAEVG 59 (122)
T ss_pred CEEEEEEEcCCC-----------CCCeEECCCcccCC--CCC------------------HHHHHHHHHHHhhCcEeeec
Confidence 489999997532 24569999988874 333 36789999999999998755
Q ss_pred cceeecccccCCCCC-CCCeeeEEEEEeEcCCCc---cccccccccCCHHHHHHH
Q 011237 97 GEWKLWKCVEEPEFG-PGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCINC 147 (490)
Q Consensus 97 ~~~~~~~w~~~~~~~-~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l~~ 147 (490)
.......+..+.-.+ ....+-...|.+....+. ..|.....|++++++.++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 114 (122)
T cd04673 60 RLLTVVDVIERDAAGRVEFHYVLIDFLCRYLGGEPVAGDDALDARWVPLDELAAL 114 (122)
T ss_pred eeEEEEEEeeccCCCccceEEEEEEEEEEeCCCcccCCcccceeEEECHHHHhhC
Confidence 544444443322001 122333344566665544 357788999999988764
No 84
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=93.76 E-value=0.27 Score=46.42 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=76.1
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHH
Q 011237 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (490)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (490)
.++-++. +.+++|+||-+||-+.- ...+.-+|-+|++.++. ++. .+++..++.+
T Consensus 50 Vl~~~~~-~~~vvLvrQyR~~v~~~----~~~~~~~lElPAG~vd~--~~p-------------------~~aA~REL~E 103 (191)
T PRK15009 50 ILLYNAK-KKTVVLIRQFRVATWVN----GNESGQLIETCAGLLDN--DEP-------------------EVCIRKEAIE 103 (191)
T ss_pred EEEEECC-CCEEEEEEccccccccc----CCCCceEEEEeccccCC--CCH-------------------HHHHHHHHHH
Confidence 3334444 45999999999996421 23456778888887762 222 5678899999
Q ss_pred HcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEc----CCC----ccccccccccCCHHHHHHHHHccC
Q 011237 88 QLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKL----LDG----NQILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 88 ~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~l----p~~----q~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
+-|+.. +.+.+.....+.+ |-- -=-+++|+|.. ..+ ..+|.....|++.+++++++.+++
T Consensus 104 ETGy~a--~~~~~l~~~~~sp--G~s-~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~ 171 (191)
T PRK15009 104 ETGYEV--GEVRKLFELYMSP--GGV-TELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGE 171 (191)
T ss_pred hhCCcc--ceEEEeeEEEcCC--ccc-CcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCC
Confidence 999975 4455555555555 332 22256666653 111 256777899999999999998875
No 85
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=93.70 E-value=0.32 Score=42.59 Aligned_cols=96 Identities=13% Similarity=0.111 Sum_probs=61.5
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeec--
Q 011237 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR-- 94 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~-- 94 (490)
.++||+|+... +.|.||++.+.. +|. ..+++..++.++.|+...
T Consensus 11 ~~vLLv~~~~~--------------~~w~lPgG~ve~--gEt------------------~~~aa~REl~EEtGl~~~~~ 56 (131)
T cd04686 11 DKILLLYTKRY--------------GDYKFPGGGVEK--GED------------------HIEGLIRELQEETGATNIRV 56 (131)
T ss_pred CEEEEEEEcCC--------------CcEECccccCCC--CCC------------------HHHHHHHHHHHHHCCccccc
Confidence 58999998531 259999999875 444 267889999999999863
Q ss_pred cCcceeecccc---cCCCCCCCCeeeEEEEEeEcCCCc-----c-ccc---cccccCCHHHHHHHH
Q 011237 95 DGGEWKLWKCV---EEPEFGPGLTIHTVYIMGKLLDGN-----Q-ILQ---EGCKWMSTQSCINCL 148 (490)
Q Consensus 95 ~~~~~~~~~w~---~~~~~~~~~~~dt~f~~a~lp~~q-----~-~e~---~~~~W~~~~~~l~~~ 148 (490)
...+..+.++. .+. +...+.-..||++.+..+. + .|. -.+.|++++++++.-
T Consensus 57 ~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~~ 120 (131)
T cd04686 57 IEKFGTYTERRPWRKPD--ADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEHN 120 (131)
T ss_pred ceEEEEEEeeccccCCC--CceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHhh
Confidence 22334443222 222 1122233568888887654 1 122 248999999998853
No 86
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=93.68 E-value=0.44 Score=42.71 Aligned_cols=116 Identities=15% Similarity=0.179 Sum_probs=70.3
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHH
Q 011237 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (490)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (490)
.+++|+.|+. .+.||+|++.-++. -+..|++|++.+.+ +|. ..+++..+
T Consensus 3 ~v~viv~~~~--~~vLl~rr~~~~~~---------~~g~w~~PgG~v~~--~E~------------------~~~aa~RE 51 (143)
T cd04694 3 GVAVLLQSSD--QKLLLTRRASSLRI---------FPNVWVPPGGHVEL--GEN------------------LLEAGLRE 51 (143)
T ss_pred EEEEEEEcCC--CEEEEEEECCCCCC---------CCCeEECcccccCC--CCC------------------HHHHHHHH
Confidence 4677878764 38999999864321 25679999988753 332 14678899
Q ss_pred HHHHcCCeeccCc--ceeecc---cccCCC-CCCC--CeeeEEEEEeEcCCC---------ccccccccccCCHHHHHHH
Q 011237 85 ILEQLGFGVRDGG--EWKLWK---CVEEPE-FGPG--LTIHTVYIMGKLLDG---------NQILQEGCKWMSTQSCINC 147 (490)
Q Consensus 85 ~l~~~gl~l~~~~--~~~~~~---w~~~~~-~~~~--~~~dt~f~~a~lp~~---------q~~e~~~~~W~~~~~~l~~ 147 (490)
+.++.|+.+.... ...+.. +.+... .+.. ....+.||+...+.+ +..|....+|+++++|++.
T Consensus 52 ~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~ 131 (143)
T cd04694 52 LNEETGLTLDPIDKSWQVLGLWESVYPPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV 131 (143)
T ss_pred HHHHHCCCccccccceeEEeeeccccccccCCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence 9999999887541 223332 222110 0222 123333333222211 1258889999999999998
Q ss_pred HHcc
Q 011237 148 LAEV 151 (490)
Q Consensus 148 ~~~~ 151 (490)
+..+
T Consensus 132 ~~~~ 135 (143)
T cd04694 132 VSAE 135 (143)
T ss_pred HHhh
Confidence 7644
No 87
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=93.64 E-value=0.38 Score=45.02 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=69.2
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+||.+++. ++..|.||++.+++ +|. ..+++..++.++-|+..
T Consensus 58 ~~~vlLvrq~r~~~----------~~~~~elPaG~ve~--gE~------------------~~~aA~REl~EEtG~~~-- 105 (185)
T PRK11762 58 DDTLLLIREYAAGT----------ERYELGFPKGLIDP--GET------------------PLEAANRELKEEVGFGA-- 105 (185)
T ss_pred CCEEEEEEeecCCC----------CCcEEEccceeCCC--CCC------------------HHHHHHHHHHHHHCCCC--
Confidence 45899999976653 56679999999884 444 26789999999999975
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCC-----ccccccccccCCHHHHHHHHHccC
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~-----q~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
+.+.........+ +-. .-.+++|+|.-..+ ++.|.....|++..++.+++...+
T Consensus 106 ~~l~~l~~~~~~~--~~~-~~~~~~f~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~g~ 164 (185)
T PRK11762 106 RQLTFLKELSLAP--SYF-SSKMNIVLAEDLYPERLEGDEPEPLEVVRWPLADLDELLARPD 164 (185)
T ss_pred cceEEEEEEecCC--Ccc-CcEEEEEEEEccccccCCCCCCceeEEEEEcHHHHHHHHHcCC
Confidence 4444444433333 211 22334555553322 246777899999999999988765
No 88
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=93.59 E-value=0.28 Score=47.64 Aligned_cols=100 Identities=21% Similarity=0.266 Sum_probs=53.2
Q ss_pred HHHHhCCCceEEEecCCCccccCchhhccHHHHHH-hCCCCEEEeChhhHHhhccCCCCCCceecCCCceEE--ECCEEE
Q 011237 249 KVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQK-CNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDIC--VGGQRL 325 (490)
Q Consensus 249 ~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~-~~p~a~I~~~~~~~~~l~~~~~~~~~~~~~~g~~l~--lgg~~l 325 (490)
..+.++.++..++++|.|.||.. . ..++. ..-++.++.-+..+.......-....+.+..+++.+ -++.++
T Consensus 125 ~~~~~~p~~d~~~vsh~h~dhld-----~-~~~~~~~~~~~~~wfvp~g~k~~m~~~gc~~v~el~wwe~~~~vkn~~~~ 198 (343)
T KOG3798|consen 125 MKLEDLPDLDFAVVSHDHYDHLD-----A-DAVKKITDRNPQIWFVPLGMKKWMEGDGSSTVTELNWGESSEFVKNGKTY 198 (343)
T ss_pred hhhccCCCCceeccccccccccc-----h-HHHHhhhccCccceeehhhhhheecCCCCCceeEeeccchhceecCCcEE
Confidence 34455667778999999999988 2 22222 222344444443333322221112233444444333 366778
Q ss_pred EEEeCCCCCCCCe-------------EEEECCCCEEEEcccc
Q 011237 326 TVVFSPGHTDGHV-------------ALLHASTNSLIVGDHC 354 (490)
Q Consensus 326 ~vi~tPGHT~g~i-------------~l~~~~~~vLftGD~l 354 (490)
.+..||.--.+.- .+.-+..+.+|+||+-
T Consensus 199 ti~~tPaqHw~~R~L~D~Nk~LW~sw~v~g~~nrfffaGDTG 240 (343)
T KOG3798|consen 199 TIWCLPAQHWGQRGLFDRNKRLWSSWAVIGENNRFFFAGDTG 240 (343)
T ss_pred EEEEcchhhhcccccccCCcceeeeeEEecCCceEEecCCCC
Confidence 8888887333332 3333445666777763
No 89
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=93.45 E-value=0.45 Score=41.52 Aligned_cols=104 Identities=19% Similarity=0.314 Sum_probs=63.6
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHH
Q 011237 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (490)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (490)
-.++||. . +.++||.|.+.... ...+|.||++.+.. +|. ..+....+
T Consensus 6 ~~~~ii~--~-~~~vLL~~R~~~~~----------~~g~w~~PgG~ve~--gE~------------------~~~a~~RE 52 (135)
T PRK10546 6 VVAAIIE--R-DGKILLAQRPAHSD----------QAGLWEFAGGKVEP--GES------------------QPQALIRE 52 (135)
T ss_pred EEEEEEe--c-CCEEEEEEccCCCC----------CCCcEECCcccCCC--CCC------------------HHHHHHHH
Confidence 3455554 2 44899987643321 24789999987654 332 13456789
Q ss_pred HHHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc--cccccccccCCHHHHHH
Q 011237 85 ILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 85 ~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--~~e~~~~~W~~~~~~l~ 146 (490)
+.++.|+.+....+..-.++... .+.++..+|.+..-.|. ..|.....|++++++.+
T Consensus 53 ~~EE~Gl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 111 (135)
T PRK10546 53 LREELGIEATVGEYVASHQREVS-----GRRIHLHAWHVPDFHGELQAHEHQALVWCTPEEALR 111 (135)
T ss_pred HHHHHCCccccceeEEEEEEecC-----CcEEEEEEEEEEEecCcccccccceeEEcCHHHccc
Confidence 99999998775443222233222 25666777765554443 34677789999887654
No 90
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=93.43 E-value=0.34 Score=41.98 Aligned_cols=104 Identities=20% Similarity=0.262 Sum_probs=65.0
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHH
Q 011237 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (490)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (490)
-++.+|.|+. .++||+|+...|. ++.|++|++.++. +|. ..+++..+
T Consensus 3 av~~~i~~~~--~~vLL~~r~~~~~-----------~~~w~~PgG~ve~--gEs------------------~~~aa~RE 49 (130)
T cd04681 3 AVGVLILNED--GELLVVRRAREPG-----------KGTLDLPGGFVDP--GES------------------AEEALIRE 49 (130)
T ss_pred eEEEEEEcCC--CcEEEEEecCCCC-----------CCcEeCCceeecC--CCC------------------HHHHHHHH
Confidence 3566777764 3899998875431 4579999988853 333 26778999
Q ss_pred HHHHcCCeeccCcceeecccccCCCCCCCCeee--EEEEEeEcCCCc----cccccccccCCHHHH
Q 011237 85 ILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIH--TVYIMGKLLDGN----QILQEGCKWMSTQSC 144 (490)
Q Consensus 85 ~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~d--t~f~~a~lp~~q----~~e~~~~~W~~~~~~ 144 (490)
+.++.|+....-....-..+..+. .+.++. ..||++.++.+. ..|.....|+++.+.
T Consensus 50 ~~EEtGl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el 112 (130)
T cd04681 50 IREETGLKVTELSYLFSLPNTYPY---GGMEYDTLDLFFVCQVDDKPIVKAPDDVAELKWVVPQDI 112 (130)
T ss_pred HHHHhCCcccceeEEEeecceeee---CCceeEEEEEEEEEEeCCCCCcCChHHhheeEEecHHHC
Confidence 999999977633221111111111 122222 247888887653 467888999997764
No 91
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=92.96 E-value=0.27 Score=44.72 Aligned_cols=109 Identities=12% Similarity=0.207 Sum_probs=66.8
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
+++|-|+. .++||+|+... ...|++|++-+.. +|. ..+++..++.
T Consensus 12 ~~~i~~~~--g~vLL~~r~~~-------------~~~w~~P~G~~~~--gE~------------------~~~aa~REl~ 56 (156)
T PRK00714 12 GIILLNRQ--GQVFWGRRIGQ-------------GHSWQFPQGGIDP--GET------------------PEQAMYRELY 56 (156)
T ss_pred EEEEEecC--CEEEEEEEcCC-------------CCeEECCcccCCC--CcC------------------HHHHHHHHHH
Confidence 34566554 38999999732 2569999987764 343 2677899999
Q ss_pred HHcCCeecc-CcceeecccccCC---CC-C-CCCee---eEEEEEeEcCCCc---------cccccccccCCHHHHHHHH
Q 011237 87 EQLGFGVRD-GGEWKLWKCVEEP---EF-G-PGLTI---HTVYIMGKLLDGN---------QILQEGCKWMSTQSCINCL 148 (490)
Q Consensus 87 ~~~gl~l~~-~~~~~~~~w~~~~---~~-~-~~~~~---dt~f~~a~lp~~q---------~~e~~~~~W~~~~~~l~~~ 148 (490)
++.|+.... ..+..+..|++-. .. . ....| ...||++++..+. +.|....+|++..++.+.+
T Consensus 57 EEtG~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~ 136 (156)
T PRK00714 57 EEVGLRPEDVEILAETRDWLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQV 136 (156)
T ss_pred HHhCCCccceEEEEEcCCeEEecCcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhc
Confidence 999998652 2233232232211 00 0 00112 4567777764322 1378899999999998865
Q ss_pred Hc
Q 011237 149 AE 150 (490)
Q Consensus 149 ~~ 150 (490)
..
T Consensus 137 ~~ 138 (156)
T PRK00714 137 VP 138 (156)
T ss_pred hh
Confidence 43
No 92
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=92.64 E-value=0.41 Score=40.95 Aligned_cols=105 Identities=18% Similarity=0.306 Sum_probs=63.6
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHH
Q 011237 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (490)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (490)
..++||.|+. .++||+|++.- ..|+||++.+.. +|. ..+++..+
T Consensus 4 ~v~~ii~~~~--~~vLl~~r~~~--------------~~w~lPgG~v~~--~E~------------------~~~aa~RE 47 (129)
T cd04676 4 GVTAVVRDDE--GRVLLIRRSDN--------------GLWALPGGAVEP--GES------------------PADTAVRE 47 (129)
T ss_pred eEEEEEECCC--CeEEEEEecCC--------------CcEECCeeccCC--CCC------------------HHHHHHHH
Confidence 3456676653 48999987631 789999986643 333 14678889
Q ss_pred HHHHcCCeeccCcce-eeccc---ccCCCCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHHHHH
Q 011237 85 ILEQLGFGVRDGGEW-KLWKC---VEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 85 ~l~~~gl~l~~~~~~-~~~~w---~~~~~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~l~ 146 (490)
+-++.|+.+....+. .+..+ .+.+ .+....+-+.+|.+...+++ ..|.....|++++++-+
T Consensus 48 l~EE~Gl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~ 116 (129)
T cd04676 48 VREETGLDVEVTGLVGIYTGPVHVVTYP-NGDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPP 116 (129)
T ss_pred HHHHhCceeEeeEEEEEeecccceeecC-CCCcEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCcc
Confidence 999999987654331 22222 1111 01112333445566666653 45777889999887543
No 93
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=92.62 E-value=0.58 Score=40.77 Aligned_cols=91 Identities=21% Similarity=0.379 Sum_probs=62.5
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+||...| ..+.|.||++.++. +|. -.+++..++.++.|++...
T Consensus 23 ~~~vLL~kr~~~~-----------~~g~w~lPgG~ve~--gE~------------------~~~a~~REl~EEtGl~~~~ 71 (130)
T cd04511 23 EGKVLLCRRAIEP-----------RHGFWTLPAGFMEN--GET------------------TEQGALRETWEEAGARVEI 71 (130)
T ss_pred CCEEEEEEecCCC-----------CCCeEECCcccccC--CCC------------------HHHHHHHHHHHHhCCEEEe
Confidence 4599999996543 13579999999874 444 2577899999999998865
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHH
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSC 144 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~ 144 (490)
..+...-. .+ ...--..||++++..++ +.|.....|+++.+.
T Consensus 72 ~~~~~~~~---~~----~~~~~~~~f~~~~~~~~~~~~~e~~~~~~~~~~~l 116 (130)
T cd04511 72 DGLYAVYS---VP----HISQVYMFYRARLLDLDFAPGPESLEVRLFTEEEI 116 (130)
T ss_pred eeEEEEEe---cC----CceEEEEEEEEEEcCCcccCCcchhceEEECHHHC
Confidence 44332211 11 12334567888888775 457788899997754
No 94
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=92.47 E-value=0.44 Score=42.60 Aligned_cols=107 Identities=14% Similarity=0.270 Sum_probs=67.2
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
+++|-|. +.++||+|+..-+ ..|++|++.+.+ +|. ..+++..++-
T Consensus 7 ~~ii~~~--~~~vLL~~r~~~~-------------~~W~~PgG~~e~--gE~------------------~~~aA~REv~ 51 (147)
T cd03671 7 GVVLFNE--DGKVFVGRRIDTP-------------GAWQFPQGGIDE--GED------------------PEQAALRELE 51 (147)
T ss_pred EEEEEeC--CCEEEEEEEcCCC-------------CCEECCcCCCCC--CcC------------------HHHHHHHHHH
Confidence 3455554 3499999998765 569999988754 333 3778999999
Q ss_pred HHcCCeeccCcc-eeeccccc---CCCCCCCCee-------eEEEEEeEcCC--Cc-------cccccccccCCHHHHHH
Q 011237 87 EQLGFGVRDGGE-WKLWKCVE---EPEFGPGLTI-------HTVYIMGKLLD--GN-------QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 87 ~~~gl~l~~~~~-~~~~~w~~---~~~~~~~~~~-------dt~f~~a~lp~--~q-------~~e~~~~~W~~~~~~l~ 146 (490)
++-|+.+....+ ..+.-|++ +.+ ...+.+ ...+|++.+.. ++ +.|.....|++++++.+
T Consensus 52 EEtGl~~~~~~~l~~~~~~~~y~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~ 130 (147)
T cd03671 52 EETGLDPDSVEIIAEIPDWLRYDLPPE-LKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPD 130 (147)
T ss_pred HHHCCCcCceEEEEEcCCeeEeeChhh-hhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHH
Confidence 999998754322 22222222 221 111122 23556665543 22 24889999999999998
Q ss_pred HHH
Q 011237 147 CLA 149 (490)
Q Consensus 147 ~~~ 149 (490)
++.
T Consensus 131 ~~~ 133 (147)
T cd03671 131 LIV 133 (147)
T ss_pred hch
Confidence 754
No 95
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=92.17 E-value=0.83 Score=40.02 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=60.7
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccC
Q 011237 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (490)
.++||+|+... ...-|++|++.++. +|. + .+++..++.++.|+....-
T Consensus 12 ~~vLL~~r~~~------------~~~~w~lPgG~ie~--gEt-----------------~-~~aA~REl~EEtGl~~~~~ 59 (131)
T cd03429 12 DRILLARQPRF------------PPGMYSLLAGFVEP--GES-----------------L-EEAVRREVKEEVGIRVKNI 59 (131)
T ss_pred CEEEEEEecCC------------CCCcCcCCcccccC--CCC-----------------H-HHHHhhhhhhccCceeeee
Confidence 59999998632 24579999998764 444 2 5678899999999987532
Q ss_pred cceeecccccCCCCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHHHHHH
Q 011237 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSCINC 147 (490)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~l~~ 147 (490)
.. .... +.. . +..+ ..+|++....++ ..|.....|++.+++.++
T Consensus 60 --~~-l~~~-~~~-~-~~~~-~~~f~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 60 --RY-VGSQ-PWP-F-PSSL-MLGFTAEADSGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred --EE-Eeec-CCC-C-CceE-EEEEEEEEcCCcccCCchhhhccEeecHHHHhhc
Confidence 22 2221 111 1 2233 456677777654 357788999999988887
No 96
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=91.77 E-value=0.93 Score=38.85 Aligned_cols=105 Identities=18% Similarity=0.260 Sum_probs=63.3
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.+++|.|. +.++||.|++.-++. ...+|++|++.+.. +|. ..+++..++
T Consensus 4 v~~vv~~~--~~~iLl~kr~~~~~~---------~~g~w~~PgG~ve~--gEs------------------~~~aa~RE~ 52 (129)
T cd04699 4 VAALIVKD--VGRILILKRSKDERT---------APGKWELPGGKVEE--GET------------------FEEALKREV 52 (129)
T ss_pred EEEEEECC--CCcEEEEEecCCCCC---------CCCcCcCCccCccC--CCC------------------HHHHHHHHH
Confidence 45566653 248999988754432 45579999986654 333 135678899
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCC---ccccccccccCCHHHH
Q 011237 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSC 144 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~---q~~e~~~~~W~~~~~~ 144 (490)
.++.|+.+....+... .+... +......-..+|.+....+ +..|.....|++++++
T Consensus 53 ~EE~Gl~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el 111 (129)
T cd04699 53 YEETGLTVTPFLRYPS--TVTHE-DSGVYNVIYLVFVCEALSGAVKLSDEHEEYAWVTLEEL 111 (129)
T ss_pred HHhhCcEEEeeeeeeE--EEEEc-CCCEEEEEEEEEEeeecCCcccCChhheEEEEecHHHh
Confidence 9999998876554211 22222 1111233344555544333 2457788899998886
No 97
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=91.22 E-value=1.1 Score=37.82 Aligned_cols=93 Identities=17% Similarity=0.345 Sum_probs=61.1
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccC
Q 011237 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (490)
.++||.|++..+. ...+|+||++.+.. ++. ..+.+..++.++.|+.+...
T Consensus 13 ~~~Ll~~r~~~~~----------~~g~w~~p~G~~~~--~e~------------------~~~~a~Re~~EE~g~~~~~~ 62 (124)
T cd03425 13 GRILIAQRPAGKH----------LGGLWEFPGGKVEP--GET------------------PEQALVRELREELGIEVEVG 62 (124)
T ss_pred CEEEEEEeCCCCC----------CCCeEeCCCcccCC--CCC------------------HHHHHHHHHHHhhCcEEecc
Confidence 5899998876542 35689999986643 121 13556788999999887653
Q ss_pred cce-eecccccCCCCCCCCeeeEEEEEeEcCCCc--cccccccccCCHHHHH
Q 011237 97 GEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSCI 145 (490)
Q Consensus 97 ~~~-~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--~~e~~~~~W~~~~~~l 145 (490)
... .+.|.. +.......+|.+....+. ..|...+.|++++++.
T Consensus 63 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~ 108 (124)
T cd03425 63 ELLATVEHDY------PDKRVTLHVFLVELWSGEPQLLEHQELRWVPPEELD 108 (124)
T ss_pred ceEEEEEeeC------CCCeEEEEEEEEeeeCCCcccccCceEEEeeHHHcc
Confidence 222 222222 135777888888776555 3577889999987764
No 98
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=91.22 E-value=0.76 Score=47.36 Aligned_cols=99 Identities=16% Similarity=0.228 Sum_probs=67.4
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.+.||+|....|+ .+.|.||++.++. +|. + .+++..++.++.|+++..
T Consensus 213 ~g~VLLvrR~~~p~-----------~g~W~lPGG~ve~--gEt-----------------~-~~Aa~REl~EETGl~v~~ 261 (340)
T PRK05379 213 SGHVLLVRRRAEPG-----------KGLWALPGGFLEQ--DET-----------------L-LDACLRELREETGLKLPE 261 (340)
T ss_pred CCEEEEEEecCCCC-----------CCeEECCcccCCC--CCC-----------------H-HHHHHHHHHHHHCCcccc
Confidence 34899999865443 5789999998876 444 2 678999999999998765
Q ss_pred Ccceee----cccccCCCCCCCCeeeEEEEEeEcCCCc------cccccccccCCHHHHHH
Q 011237 96 GGEWKL----WKCVEEPEFGPGLTIHTVYIMGKLLDGN------QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 96 ~~~~~~----~~w~~~~~~~~~~~~dt~f~~a~lp~~q------~~e~~~~~W~~~~~~l~ 146 (490)
..+... .-+-.|. ..+..+.-|.+|.+.++.++ ..|...+.|++.+++.+
T Consensus 262 ~~l~~~~~~~~~f~~p~-r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~ 321 (340)
T PRK05379 262 PVLRGSIRDQQVFDHPG-RSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLA 321 (340)
T ss_pred cccceeeeeeEEEcCCC-CCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhh
Confidence 433211 1122222 11223556788888888664 45889999999988865
No 99
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=91.20 E-value=1.4 Score=39.09 Aligned_cols=115 Identities=19% Similarity=0.181 Sum_probs=68.5
Q ss_pred hcCCC-CCceeEEeecCCCCCCCcccccccccccCCCC-CccccccccCcCCCCccccccccccccccchhhhHHHHHHH
Q 011237 10 LKNPL-NDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDL-PAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (490)
Q Consensus 10 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (490)
|.|.. +...+||.|.++.-+ .-...|++ |++.+++ +|. ..++++.++.+
T Consensus 9 v~~~~~~~~~vLl~~R~~~~~---------~~pg~W~~~~gG~ve~--gEt------------------~~~aa~REl~E 59 (144)
T cd04692 9 IITKDEGKGYVLLQKRSANKK---------TYPGLWDISSAGHILA--GET------------------PLEDGIRELEE 59 (144)
T ss_pred EEEccCCCCEEEEEecCCCCC---------CCCCccccccCcccCC--CCC------------------HHHHHHHHHHH
Confidence 44443 235677766543211 12467999 4877653 444 26789999999
Q ss_pred HcCCeeccCcceeecccccCCC-CCC-CCeeeEEEEEeEcCC--Cc----cccccccccCCHHHHHHHHHccCC
Q 011237 88 QLGFGVRDGGEWKLWKCVEEPE-FGP-GLTIHTVYIMGKLLD--GN----QILQEGCKWMSTQSCINCLAEVKP 153 (490)
Q Consensus 88 ~~gl~l~~~~~~~~~~w~~~~~-~~~-~~~~dt~f~~a~lp~--~q----~~e~~~~~W~~~~~~l~~~~~~~~ 153 (490)
+.|+.+..+.+........... .+. ..+.-..+|++.+.. ++ ..|.....|++.+++.+.+.+.+.
T Consensus 60 EtGl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~ 133 (144)
T cd04692 60 ELGLDVSADDLIPLGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLEEEDH 133 (144)
T ss_pred HhCCCCChHHeEEeeEEEEeccccCCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHHcCCC
Confidence 9999886555543332221110 011 112223455565543 32 468899999999999999987654
No 100
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=91.19 E-value=1.3 Score=40.46 Aligned_cols=113 Identities=16% Similarity=0.151 Sum_probs=68.3
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCC-ccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLP-AIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
+++|.|+. .++||.|++.+. ..-...|++| ++.+.+ +|. ..++++.++
T Consensus 34 ~v~i~~~~--~~iLl~kR~~~~---------~~~Pg~w~~~~gG~ie~--GEt------------------~~eaa~REl 82 (165)
T cd02885 34 SVFLFNSK--GRLLLQRRALSK---------YTFPGLWTNTCCSHPLP--GEG------------------VKDAAQRRL 82 (165)
T ss_pred EEEEEcCC--CcEEEEeccCCC---------ccCCCcccccccCCCCC--CCC------------------HHHHHHHHH
Confidence 46678765 379999876421 1225778886 554432 333 267899999
Q ss_pred HHHcCCeeccCcce-eecccccCCCCCCCC--eeeEEEEEeEcCCCc---cccccccccCCHHHHHHHHHccC
Q 011237 86 LEQLGFGVRDGGEW-KLWKCVEEPEFGPGL--TIHTVYIMGKLLDGN---QILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 86 l~~~gl~l~~~~~~-~~~~w~~~~~~~~~~--~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
.++.|+.+....+. .--++..+.. .... .+. .+|.+.+..+. ..|.....|++++++.+.+.+..
T Consensus 83 ~EEtGl~~~~~~~~~~~~~~~~~~~-~~~~~~~i~-~~f~~~~~~~~~~~~~Ev~~~~w~~~~el~~~~~~~~ 153 (165)
T cd02885 83 REELGITGDLLELVLPRFRYRAPDD-GGLVEHEID-HVFFARADVTLIPNPDEVSEYRWVSLEDLKELVAAAP 153 (165)
T ss_pred HHHhCCCccchhhccceEEEEEEcC-CCceeeEEE-EEEEEEeCCCCCCCccceeEEEEECHHHHHHHHHhCc
Confidence 99999988754442 1112222110 1111 132 45556554332 45778899999999999988763
No 101
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=90.75 E-value=1.2 Score=38.71 Aligned_cols=100 Identities=23% Similarity=0.378 Sum_probs=67.9
Q ss_pred ceeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHH
Q 011237 4 YNVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALN 83 (490)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (490)
|=.|++|.|. +.+.||+|+.+.| .+..|.||++..+. +|. ..+++..
T Consensus 1 ~~~~~vv~~~--~~~vLl~~r~~~~-----------~~~~w~lPgG~ve~--gEt------------------~~~aa~R 47 (123)
T cd04671 1 YIVAAVILNN--QGEVLLIQEAKRS-----------CRGKWYLPAGRMEP--GET------------------IEEAVKR 47 (123)
T ss_pred CEEEEEEEcC--CCEEEEEEecCCC-----------CCCeEECceeecCC--CCC------------------HHHHHHH
Confidence 3456677664 3589999997543 14579999988863 444 2678999
Q ss_pred HHHHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc-------cccccccccCCHHHH
Q 011237 84 QILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-------QILQEGCKWMSTQSC 144 (490)
Q Consensus 84 ~~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-------~~e~~~~~W~~~~~~ 144 (490)
++.++.|+.++...+... ... ++.+-..+|.+....|+ +.|...++|++.++.
T Consensus 48 El~EEtG~~~~~~~~~~~----~~~----~~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el 107 (123)
T cd04671 48 EVKEETGLDCEPTTLLSV----EEQ----GGSWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDL 107 (123)
T ss_pred HHHHHHCCeeecceEEEE----Ecc----CCeEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHC
Confidence 999999999987654432 111 13455667778877664 235558999997665
No 102
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=90.60 E-value=0.74 Score=39.64 Aligned_cols=97 Identities=21% Similarity=0.364 Sum_probs=61.8
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHH
Q 011237 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (490)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (490)
|.++||-|. +.++||+|+..+. ...|.||++.++. +|. ..+++..+
T Consensus 2 ~~~~ii~~~--~~~vLL~~r~~~~------------~~~w~lPGG~ve~--gEs------------------~~~a~~RE 47 (121)
T cd04669 2 RASIVIIND--QGEILLIRRIKPG------------KTYYVFPGGGIEE--GET------------------PEEAAKRE 47 (121)
T ss_pred ceEEEEEeC--CCEEEEEEEecCC------------CCcEECCceeccC--CCC------------------HHHHHHHH
Confidence 445566543 3489999975431 2469999999873 555 26778899
Q ss_pred HHHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc-----cc--------cccccccCCHHHH
Q 011237 85 ILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----QI--------LQEGCKWMSTQSC 144 (490)
Q Consensus 85 ~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-----~~--------e~~~~~W~~~~~~ 144 (490)
+.++.|+.+....+.....+ . ..+..||++..-.|. .. +.....|++.+++
T Consensus 48 l~EEtGl~~~~~~~~~~~~~---~------~~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el 111 (121)
T cd04669 48 ALEELGLDVRVEEIFLIVNQ---N------GRTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQL 111 (121)
T ss_pred HHHhhCeeEeeeeEEEEEee---C------CcEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHc
Confidence 99999999865544322211 1 234678887776654 11 1234689997664
No 103
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=90.39 E-value=0.8 Score=39.62 Aligned_cols=99 Identities=22% Similarity=0.234 Sum_probs=62.9
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccC
Q 011237 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (490)
.++||++.... ..|++|++.++. +|. ..+++..++.++.|+.+...
T Consensus 19 ~~vLL~~r~~~--------------~~w~~PgG~v~~--gEt------------------~~~aa~REl~EE~Gi~~~~~ 64 (132)
T cd04677 19 GEVLLQKRSDT--------------GDWGLPGGAMEL--GES------------------LEETARRELKEETGLEVEEL 64 (132)
T ss_pred CCEEEEEecCC--------------CcEECCeeecCC--CCC------------------HHHHHHHHHHHHhCCeeeee
Confidence 48888776532 469999977653 333 25679999999999998764
Q ss_pred cce-eec---ccccCCCCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHHHHHHHHc
Q 011237 97 GEW-KLW---KCVEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSCINCLAE 150 (490)
Q Consensus 97 ~~~-~~~---~w~~~~~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~l~~~~~ 150 (490)
.+. .+. .|..+.. +....+-+.||+.....++ ..|...+.|++++++.+.+..
T Consensus 65 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 125 (132)
T cd04677 65 ELLGVYSGKEFYVKPNG-DDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELINP 125 (132)
T ss_pred EEEEEecCCceeecCCC-CcEEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchhH
Confidence 433 221 1222220 2223455667777655443 457888999999888765443
No 104
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=90.39 E-value=1.4 Score=37.81 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=60.0
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHH
Q 011237 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (490)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (490)
+.+++|-+ +..+||+|+. +...|.+|++.++. +|. ..+++..+
T Consensus 3 ~~~~vi~~---~~~vLlv~~~--------------~~~~~~lPGG~ve~--gEt------------------~~~aa~RE 45 (125)
T cd04689 3 RARAIVRA---GNKVLLARVI--------------GQPHYFLPGGHVEP--GET------------------AENALRRE 45 (125)
T ss_pred EEEEEEEe---CCEEEEEEec--------------CCCCEECCCCcCCC--CCC------------------HHHHHHHH
Confidence 34455542 4589999974 12369999976652 222 36789999
Q ss_pred HHHHcCCeeccCccee-e-cccccCCCCCCCCeeeEEEEEeEcCCCc-------cccccccccCCHHH
Q 011237 85 ILEQLGFGVRDGGEWK-L-WKCVEEPEFGPGLTIHTVYIMGKLLDGN-------QILQEGCKWMSTQS 143 (490)
Q Consensus 85 ~l~~~gl~l~~~~~~~-~-~~w~~~~~~~~~~~~dt~f~~a~lp~~q-------~~e~~~~~W~~~~~ 143 (490)
+.++.|+.+....+.. . ..|..+ +.....-+.||.+.++.+. ..|.....|++.++
T Consensus 46 l~EEtGl~~~~~~~l~~~~~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~e 110 (125)
T cd04689 46 LQEELGVAVSDGRFLGAIENQWHEK---GVRTHEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSD 110 (125)
T ss_pred HHHHhCceeeccEEEEEEeeeeccC---CceEEEEEEEEEEEcccccccCCccCccceEEEEEccHHH
Confidence 9999999887543221 1 122221 1111222467788876432 23567899999877
No 105
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=90.03 E-value=1.8 Score=38.17 Aligned_cols=95 Identities=15% Similarity=0.239 Sum_probs=59.2
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccC
Q 011237 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (490)
.+.||+|+.. ...|-||++.+++ +|. ..+++..++.++-|+.+...
T Consensus 15 ~~vLLv~r~~--------------~~~w~lPgG~ve~--gE~------------------~~~aa~REl~EEtGl~~~~~ 60 (138)
T cd03674 15 GKVLLTHHRK--------------LGSWLQPGGHIDP--DES------------------LLEAALRELREETGIELLGL 60 (138)
T ss_pred CeEEEEEEcC--------------CCcEECCceecCC--CCC------------------HHHHHHHHHHHHHCCCcccc
Confidence 5899999854 2579999988875 554 26789999999999976543
Q ss_pred ccee-----ecccccCCC-CC-CCCe-eeEEEEEeEcCCCc-----cccccccccCCHHHHHH
Q 011237 97 GEWK-----LWKCVEEPE-FG-PGLT-IHTVYIMGKLLDGN-----QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 97 ~~~~-----~~~w~~~~~-~~-~~~~-~dt~f~~a~lp~~q-----~~e~~~~~W~~~~~~l~ 146 (490)
.... ..++..... .+ +... ++.. |++..+.+. ..|...+.|++.+++..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 122 (138)
T cd03674 61 RPLSVLVDLDVHPIDGHPKRGVPGHLHLDLR-FLAVAPADDVAPPKSDESDAVRWFPLDELAS 122 (138)
T ss_pred eeccccccceeEeecCCCCCCCCCcEEEEEE-EEEEccCccccCCCCCcccccEEEcHHHhhh
Confidence 3221 123321110 00 1122 3334 555555443 45888999999887754
No 106
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=89.13 E-value=1.7 Score=36.71 Aligned_cols=88 Identities=22% Similarity=0.392 Sum_probs=58.6
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|+.. ..|.+|++.+++ +|. ..+.+..++.++.|+....
T Consensus 10 ~~~vLlv~r~~---------------~~w~~PgG~ve~--gE~------------------~~~aa~REl~EEtGl~~~~ 54 (112)
T cd04667 10 GGRVLLVRKSG---------------SRWALPGGKIEP--GET------------------PLQAARRELQEETGLQGLD 54 (112)
T ss_pred CCEEEEEEcCC---------------CcEeCCCCcCCC--CCC------------------HHHHHHHHHHHHhCCcccc
Confidence 45899999841 579999977754 333 2577899999999987642
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHHHHHH
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSCINC 147 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~l~~ 147 (490)
+.....+ . . ... ...+|++.++.+. ..|...+.|+++.++.+.
T Consensus 55 --~~~~~~~-~-~----~~~-~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 101 (112)
T cd04667 55 --LLYLFHV-D-G----GST-RHHVFVASVPPSAQPKPSNEIADCRWLSLDALGDL 101 (112)
T ss_pred --eEEEEEE-e-C----CCE-EEEEEEEEcCCcCCCCCchheeEEEEecHHHhhhc
Confidence 2222222 1 1 122 3467788877653 457788999999887653
No 107
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=88.97 E-value=2 Score=37.04 Aligned_cols=102 Identities=20% Similarity=0.268 Sum_probs=62.9
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.+++|-|+. .++||+|+..+ + +..|.+|++.... +|. ..+++..++
T Consensus 5 ~~~~v~~~~--~~vLl~~r~~~--~----------~~~w~~PGG~ve~--gEt------------------~~~aa~RE~ 50 (127)
T cd04670 5 VGGLVLNEK--NEVLVVQERNK--T----------PNGWKLPGGLVDP--GED------------------IFDGAVREV 50 (127)
T ss_pred EEEEEEcCC--CeEEEEEccCC--C----------CCcEECCCccCCC--CCC------------------HHHHHHHHH
Confidence 455666654 38999987553 1 2469999988753 443 267899999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCC--Cc----cccccccccCCHHHHHH
Q 011237 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLD--GN----QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~--~q----~~e~~~~~W~~~~~~l~ 146 (490)
.++.|+.++...+..+..|-. . . ....+ .||+..+.. ++ ..|.....|++.++.++
T Consensus 51 ~EE~Gl~~~~~~~~~~~~~~~-~--~-~~~~~-~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 112 (127)
T cd04670 51 LEETGIDTEFVSVVGFRHAHP-G--A-FGKSD-LYFICRLKPLSFDINFDTSEIAAAKWMPLEEYIS 112 (127)
T ss_pred HHHHCCCcceeEEEEEEecCC-C--C-cCcee-EEEEEEEccCcCcCCCChhhhheeEEEcHHHHhc
Confidence 999999886444333333322 1 1 12333 344544432 22 45777889999888743
No 108
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=88.71 E-value=2 Score=37.83 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=58.5
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||.|.+.+++.. +..|++|++.+.+ +|. ..+++..++.++.|+.+..
T Consensus 14 ~~~vLl~~R~~~~~~~---------~g~W~lPgG~ve~--gEs------------------~~~aa~REl~EEtGl~~~~ 64 (141)
T PRK15472 14 DGAYLLCKMADDRGVF---------PGQWALSGGGVEP--GER------------------IEEALRREIREELGEQLLL 64 (141)
T ss_pred CCEEEEEEecccCCCC---------CCceeCCcccCCC--CCC------------------HHHHHHHHHHHHHCCceee
Confidence 3589998865443221 2579999998653 555 2577889999999998765
Q ss_pred Ccceeecccc-----c-CCCCCCC-CeeeEEE-EEeEcCCCc---cccccccccCCHHHHHH
Q 011237 96 GGEWKLWKCV-----E-EPEFGPG-LTIHTVY-IMGKLLDGN---QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 96 ~~~~~~~~w~-----~-~~~~~~~-~~~dt~f-~~a~lp~~q---~~e~~~~~W~~~~~~l~ 146 (490)
..+.+|.-.. . +. +.. ..|...+ |......+. ..|.....|+++++.-+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 124 (141)
T PRK15472 65 TEITPWTFRDDIRTKTYAD--GRKEEIYMIYLIFDCVSANRDVKINEEFQDYAWVKPEDLVH 124 (141)
T ss_pred eeeccccccccceeEEecC--CCceeEEEEEEEEEeecCCCcccCChhhheEEEccHHHhcc
Confidence 5444332110 0 11 111 1233332 222222222 45788999999887644
No 109
>PLN02325 nudix hydrolase
Probab=88.41 E-value=2.2 Score=38.14 Aligned_cols=94 Identities=19% Similarity=0.197 Sum_probs=60.1
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccC
Q 011237 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (490)
.+.||+|...+|. .+.|.||++.++ .+|. ..+++..++.++.|+.+...
T Consensus 20 ~~vLL~rr~~~~~-----------~g~W~lPGG~ve--~gEs------------------~~~aa~REv~EEtGl~v~~~ 68 (144)
T PLN02325 20 NSVLLGRRRSSIG-----------DSTFALPGGHLE--FGES------------------FEECAAREVKEETGLEIEKI 68 (144)
T ss_pred CEEEEEEecCCCC-----------CCeEECCceeCC--CCCC------------------HHHHHHHHHHHHHCCCCcce
Confidence 4899988876543 246999998775 3343 26789999999999988755
Q ss_pred cceeec-ccccCCCCCCCCeeeEEEEEeEcCCCc-------cccccccccCCHHH
Q 011237 97 GEWKLW-KCVEEPEFGPGLTIHTVYIMGKLLDGN-------QILQEGCKWMSTQS 143 (490)
Q Consensus 97 ~~~~~~-~w~~~~~~~~~~~~dt~f~~a~lp~~q-------~~e~~~~~W~~~~~ 143 (490)
.+.... +..... ..+..+-+.||.+.+.+++ ..|...+.|++.++
T Consensus 69 ~~l~~~~~~~~~~--~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~ 121 (144)
T PLN02325 69 ELLTVTNNVFLEE--PKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDN 121 (144)
T ss_pred EEEEEecceeecC--CCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHH
Confidence 443322 222212 2234567778888765443 12336679999665
No 110
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=88.37 E-value=4.7 Score=34.81 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=64.1
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCC-ccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLP-AIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
.++||.|.++-+++ ....|++| ++.+.. +|. ..+++..++.++.|+...
T Consensus 12 ~~iLl~~R~~~~~~---------~~g~w~~~~GG~ve~--gE~------------------~~~aa~REl~EEtGl~~~- 61 (126)
T cd04697 12 GKLCVHKRTLTKDW---------CPGYWDIAFGGVVQA--GES------------------YLQNAQRELEEELGIDGV- 61 (126)
T ss_pred CeEEEEECCCCCCC---------CCCcccCcCCcccCC--CCC------------------HHHHHHHHHHHHHCCCcc-
Confidence 48888765544322 24579994 666643 333 257899999999999765
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCC---CccccccccccCCHHHHHHHHHccC
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLD---GNQILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~---~q~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
.+.+...+.... ... ++.-.+|.+.... -|..|.....|++++++.+++....
T Consensus 62 -~l~~~~~~~~~~--~~~-~~~~~~f~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 117 (126)
T cd04697 62 -QLTPLGLFYYDT--DGN-RVWGKVFSCVYDGPLKLQEEEVEEITWLSINEILQFKEGEN 117 (126)
T ss_pred -ccEEeeEEEecC--CCc-eEEEEEEEEEECCCCCCCHhHhhheEEcCHHHHHHHhhcCc
Confidence 445554444333 222 3333445555432 1246888999999999999776654
No 111
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=88.26 E-value=3 Score=35.54 Aligned_cols=101 Identities=18% Similarity=0.351 Sum_probs=58.2
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
++||.|. +.++||.|-+..+.+ +.+|++|++.++. +|. ..+++..++.
T Consensus 8 ~~ii~~~--~~~vll~rR~~~~~~----------~g~w~~PgG~~~~--gE~------------------~~~a~~Re~~ 55 (129)
T PRK10776 8 VGIIRNP--NNEIFITRRAADAHM----------AGKWEFPGGKIEA--GET------------------PEQALIRELQ 55 (129)
T ss_pred EEEEECC--CCEEEEEEecCCCCC----------CCeEECCceecCC--CCC------------------HHHHHHHHHH
Confidence 3455442 348888885432211 4689999865543 222 1345568888
Q ss_pred HHcCCeeccCc-ceeecccccCCCCCCCCeeeEEEEEeEcCCCc--cccccccccCCHHHHH
Q 011237 87 EQLGFGVRDGG-EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSCI 145 (490)
Q Consensus 87 ~~~gl~l~~~~-~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--~~e~~~~~W~~~~~~l 145 (490)
++.|+.+.... +..+ +++.+ .+...-.||.+...+++ ..|.....|+++++.-
T Consensus 56 EE~gl~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~ 111 (129)
T PRK10776 56 EEVGITVQHATLFEKL-EYEFP-----DRHITLWFWLVESWEGEPWGKEGQPGRWVSQVALN 111 (129)
T ss_pred HHHCCceecceEEEEE-EeeCC-----CcEEEEEEEEEEEECCccCCccCCccEEecHHHCc
Confidence 99998765322 2222 22222 24556667776655444 2366778999977643
No 112
>PHA02943 hypothetical protein; Provisional
Probab=86.96 E-value=1.5 Score=39.46 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeee
Q 011237 408 KNRRAREAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNS 475 (490)
Q Consensus 408 ~~~~~r~~~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~ 475 (490)
+...+|..+|++.++.|..|..||++.+- +...++..||.-|+++|+|++.. .|...|
T Consensus 7 d~v~~R~~eILE~Lk~G~~TtseIAkaLG---------lS~~qa~~~LyvLErEG~VkrV~-~G~~ty 64 (165)
T PHA02943 7 DTVHTRMIKTLRLLADGCKTTSRIANKLG---------VSHSMARNALYQLAKEGMVLKVE-IGRAAI 64 (165)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHC---------CCHHHHHHHHHHHHHcCceEEEe-ecceEE
Confidence 34567778899999888889999999872 23457899999999999998744 444444
No 113
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=85.19 E-value=1.3 Score=43.58 Aligned_cols=92 Identities=25% Similarity=0.278 Sum_probs=51.7
Q ss_pred CceEEEecCCCccccCchhhccHH----HHHHhCCCCEEEeChhhHHhhccCC-----CC---------CCceecCCCce
Q 011237 256 RKLIVFVTHHHRDHVDGEFIRGLS----IIQKCNPDAILLAHENTMRRIGKDD-----WS---------LGYTSVSGSED 317 (490)
Q Consensus 256 ~~~~IviTH~H~DH~G~a~~~G~~----~l~~~~p~a~I~~~~~~~~~l~~~~-----~~---------~~~~~~~~g~~ 317 (490)
.|..-+|||.|.||+. |+- .+-+.. .-+||+...+.+.+++.- |+ ..+..+++.+.
T Consensus 112 ~I~~y~ITH~HLDHIs-----GlVinSp~~~~qk-kkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~ 185 (356)
T COG5212 112 SINSYFITHAHLDHIS-----GLVINSPDDSKQK-KKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQS 185 (356)
T ss_pred hhhheEeccccccchh-----ceeecCccccccC-CceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHe
Confidence 3456899999999999 552 222221 347899888887776532 22 12345666665
Q ss_pred EEECCEEEEEEeCCC---CCCCC----eEEEECC----CCEEEEccc
Q 011237 318 ICVGGQRLTVVFSPG---HTDGH----VALLHAS----TNSLIVGDH 353 (490)
Q Consensus 318 l~lgg~~l~vi~tPG---HT~g~----i~l~~~~----~~vLftGD~ 353 (490)
..++-..+.+++-|- -.-|. .+++..+ +-++++||.
T Consensus 186 ~slt~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDv 232 (356)
T COG5212 186 LSLTLTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDV 232 (356)
T ss_pred eeeeeeeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCC
Confidence 555444444443332 11121 2333332 338889997
No 114
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=84.96 E-value=6.4 Score=36.63 Aligned_cols=74 Identities=8% Similarity=0.074 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHcCCeeccCc-ceeecccc--cCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHHHHHHHcc
Q 011237 78 IESALNQILEQLGFGVRDGG-EWKLWKCV--EEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCINCLAEV 151 (490)
Q Consensus 78 ~~~~~~~~l~~~gl~l~~~~-~~~~~~w~--~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l~~~~~~ 151 (490)
.+++..++.++.|+...... +..-..+. .+. +.-......+|++...... ..|.....|++++++.+++.+.
T Consensus 79 ~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~vf~~~~~~~~~~~~~Ev~~~~W~~~~el~~~i~~~ 156 (184)
T PRK03759 79 EDAVIRRCREELGVEITDLELVLPDFRYRATDPN--GIVENEVCPVFAARVTSALQPNPDEVMDYQWVDPADLLRAVDAT 156 (184)
T ss_pred HHHHHHHHHHHhCCCccccccccceEEEEEecCC--CceeeEEEEEEEEEECCCCCCChhHeeeEEEECHHHHHHHHHhC
Confidence 67789999999999875221 11111221 122 2111223446777765322 4578899999999999999887
Q ss_pred CC
Q 011237 152 KP 153 (490)
Q Consensus 152 ~~ 153 (490)
+.
T Consensus 157 ~~ 158 (184)
T PRK03759 157 PW 158 (184)
T ss_pred Cc
Confidence 54
No 115
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.64 E-value=5.7 Score=33.89 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=54.5
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccC
Q 011237 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (490)
.++||.|.+..+. ...+|++|++..+. ++. ..+....++.++.|+.+...
T Consensus 16 ~~vLl~~R~~~~~----------~~g~w~~Pgg~ve~--ge~------------------~~~~~~RE~~EE~g~~~~~~ 65 (128)
T TIGR00586 16 GEIIITRRADGHM----------FAKLLEFPGGKEEG--GET------------------PEQAVVRELEEEIGIPQHFS 65 (128)
T ss_pred CEEEEEEEeCCCC----------CCCeEECCCcccCC--CCC------------------HHHHHHHHHHHHHCCcceee
Confidence 3788888754332 24689999885542 222 01234478889999876543
Q ss_pred c-ceeecccccCCCCCCCCeeeEEEEEeEcCCCc--cccccccccCCHHH
Q 011237 97 G-EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQS 143 (490)
Q Consensus 97 ~-~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--~~e~~~~~W~~~~~ 143 (490)
. +...-| +. ..+...-.||++....+. ..+.....|+++++
T Consensus 66 ~~~~~~~h-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 109 (128)
T TIGR00586 66 EFEKLEYE-FY-----PRHITLWFWLLERWEGGPPGKEGQPEEWWVLVGL 109 (128)
T ss_pred eEEEEEEE-EC-----CCcEEEEEEEEEEEcCCCcCcccccccEEeCHHH
Confidence 2 222322 11 135677778888776555 23566778998664
No 116
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=84.61 E-value=7.3 Score=36.20 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=64.1
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCcccccccccccCCC-CCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWD-LPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
++|.|+ +.++||.|..++..+-. ..|+ +|++.+.+ ||. ..+++..++.
T Consensus 42 v~v~~~--~g~iLL~~R~~~~~~~p---------g~~~~~pGG~ve~--GEs------------------~~eAA~REL~ 90 (180)
T PRK15393 42 IVVHDG--MGKILVQRRTETKDFLP---------GMLDATAGGVVQA--GEQ------------------LLESARREAE 90 (180)
T ss_pred EEEECC--CCeEEEEEeCCCCCCCC---------CcccccCCCcCCC--CCC------------------HHHHHHHHHH
Confidence 445564 34899988766554432 2454 67887764 333 3677889999
Q ss_pred HHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHHHHHHHccC
Q 011237 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 87 ~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
++.|+.... +.....+.... ...++...||.+...... ..|.....|++++++.+......
T Consensus 91 EEtGl~~~~--~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~ 154 (180)
T PRK15393 91 EELGIAGVP--FAEHGQFYFED---ENCRVWGALFSCVSHGPFALQEEEVSEVCWMTPEEITARCDEFT 154 (180)
T ss_pred HHHCCCCcc--ceeceeEEecC---CCceEEEEEEEEEeCCCCCCChHHeeEEEECCHHHHhhhhhhcC
Confidence 999997432 22222222222 122332334544443222 45888999999999988765443
No 117
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=83.12 E-value=1.8 Score=30.74 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=34.2
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLP 465 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~ 465 (490)
+|+..+.+|+.++.||++.+- +...++.-||..|++.|.|.
T Consensus 6 ~Il~~L~~~~~~~~el~~~l~---------~s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 6 RILKLLSEGPLTVSELAEELG---------LSQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHHHTTSSEEHHHHHHHHT---------S-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCchhhHHHhcc---------ccchHHHHHHHHHHHCcCee
Confidence 688888889999999999873 34567899999999999986
No 118
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=82.74 E-value=3.6 Score=35.19 Aligned_cols=59 Identities=24% Similarity=0.312 Sum_probs=45.0
Q ss_pred HHHHHHHHH-HcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeec
Q 011237 413 REAAILQAI-ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSS 476 (490)
Q Consensus 413 r~~~il~~l-~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~ 476 (490)
.+.+|++.+ +.|+.|..||.+.+-.+ ..| +.+++...|..|+++|.|.+......+.|+
T Consensus 4 ~E~~IM~~lW~~~~~t~~eI~~~l~~~---~~~--~~sTv~t~L~rL~~Kg~l~~~~~gr~~~Y~ 63 (115)
T PF03965_consen 4 LELEIMEILWESGEATVREIHEALPEE---RSW--AYSTVQTLLNRLVEKGFLTREKIGRAYVYS 63 (115)
T ss_dssp HHHHHHHHHHHHSSEEHHHHHHHHCTT---SS----HHHHHHHHHHHHHTTSEEEEEETTCEEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhc---ccc--chhHHHHHHHHHHhCCceeEeecCCceEEE
Confidence 345666665 44678999999998655 223 567899999999999999999888777775
No 119
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=82.60 E-value=0.56 Score=51.87 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=29.6
Q ss_pred eEEEcCCCCChHHHHHHHHH-----HhCCCceEEEecCCCccccCchhhccHHHHHH
Q 011237 232 ALIVDPGCRSEFHEELLKVV-----ASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQK 283 (490)
Q Consensus 232 ~iLIDtG~~~~~~~~L~~~~-----~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~ 283 (490)
.||.|||-+.-. +-.+..+ ..+.+.++|++||.|.||.- |+.-+.+
T Consensus 473 ~IlLDCGEgTlg-ql~R~YG~~~~~~~lr~LraI~ISHlHADHh~-----Gl~~vL~ 523 (746)
T KOG2121|consen 473 SILLDCGEGTLG-QLVRHYGVENVDTALRKLRAIFISHLHADHHL-----GLISVLQ 523 (746)
T ss_pred cEEeecCCchHH-HHHHHhhhcchHHHHHhHHHHHHHhhcccccc-----cHHHHHH
Confidence 599999976531 1111222 12234468999999999999 8766543
No 120
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=81.52 E-value=4.2 Score=31.19 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=31.0
Q ss_pred CCeEEE-cCCCCChHHHHHHHHHHhCCCceEEEecCCC-ccccC
Q 011237 230 GEALIV-DPGCRSEFHEELLKVVASLPRKLIVFVTHHH-RDHVD 271 (490)
Q Consensus 230 g~~iLI-DtG~~~~~~~~L~~~~~~~~~~~~IviTH~H-~DH~G 271 (490)
....|| ++|-+.+ +.+.+...++.++..||+|+.. +|++|
T Consensus 21 ~~rYlFGn~gEGtQ--R~~~e~~ikl~kl~~IFlT~~~~w~~~G 62 (63)
T PF13691_consen 21 SRRYLFGNCGEGTQ--RACNEHKIKLSKLNDIFLTGLSSWENIG 62 (63)
T ss_pred CceEEeccCCcHHH--HHHHHcCCCccccceEEECCCCcccccC
Confidence 458899 8987765 4555555566777899999999 99999
No 121
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=81.47 E-value=8.8 Score=34.73 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=45.5
Q ss_pred hhHHHHHHHHcCCeeccCcceeec--ccccCCCCCCCCeeeEEEEEeEcCCC-c--cccccccccCCHHHHHHHHHccC
Q 011237 79 ESALNQILEQLGFGVRDGGEWKLW--KCVEEPEFGPGLTIHTVYIMGKLLDG-N--QILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 79 ~~~~~~~l~~~gl~l~~~~~~~~~--~w~~~~~~~~~~~~dt~f~~a~lp~~-q--~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
++++.++.++.|+.+....+..+. .+......+ ..+=..+|.+..+.. + ..|.....|+++++..+.+...+
T Consensus 71 eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~~g--~~~~~~~f~~~~~~~~~~~~~Ev~~~~W~~~~el~~~~~~~~ 147 (158)
T TIGR02150 71 EAAIRRLREELGIPADDVPLTVLPRFSYRARDAWG--EHELCPVFFARAPVPLNPNPEEVAEYRWVSLEELKEILKAPW 147 (158)
T ss_pred HHHHHHHHHHHCCCccccceEEcceEEEEEecCCC--cEEEEEEEEEecCCcccCChhHeeeEEEeCHHHHHHHHhcCc
Confidence 678999999999988755432222 233222112 223334555555441 1 45999999999999998888655
No 122
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=80.86 E-value=4 Score=40.32 Aligned_cols=90 Identities=13% Similarity=0.165 Sum_probs=60.9
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+||...| ...|.+|++-++. +|. + .+++..++.++-|+.+..
T Consensus 142 ~~~iLL~rr~~~~------------~g~wslPgG~vE~--GEs-----------------~-eeAa~REv~EEtGl~v~~ 189 (256)
T PRK00241 142 GDEILLARHPRHR------------NGVYTVLAGFVEV--GET-----------------L-EQCVAREVMEESGIKVKN 189 (256)
T ss_pred CCEEEEEEccCCC------------CCcEeCcccCCCC--CCC-----------------H-HHHhhhhhhhccCceeee
Confidence 4699999997654 2468999998864 555 2 567889999999998764
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHHH
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSC 144 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~ 144 (490)
-....--.|- | + ..-..+|.|....++ ..|...+.|++.++.
T Consensus 190 ~~~~~s~~~~----~--p-~~lm~~f~a~~~~~~~~~~~~Ei~~a~W~~~del 235 (256)
T PRK00241 190 LRYVGSQPWP----F--P-HSLMLGFHADYDSGEIVFDPKEIADAQWFRYDEL 235 (256)
T ss_pred eEEEEeEeec----C--C-CeEEEEEEEEecCCcccCCcccEEEEEEECHHHC
Confidence 3222111231 1 2 334667788876555 357789999998874
No 123
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=80.65 E-value=4.9 Score=31.07 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=39.9
Q ss_pred HHHHHHHHHc-CC--CCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc-ceeee
Q 011237 414 EAAILQAIEN-GV--ETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL-ESFNS 475 (490)
Q Consensus 414 ~~~il~~l~~-g~--~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~-~~~~~ 475 (490)
.++|+..+.+ |+ .|+.||++.+- + ....+.-||..|+++|.|.+..+. ++|.-
T Consensus 8 ~~~IL~~L~~~g~~~~ta~eLa~~lg--l-------~~~~v~r~L~~L~~~G~V~~~~~~~~~W~i 64 (68)
T smart00550 8 EEKILEFLENSGDETSTALQLAKNLG--L-------PKKEVNRVLYSLEKKGKVCKQGGTPPLWKL 64 (68)
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHC--C-------CHHHHHHHHHHHHHCCCEEecCCCCCceEe
Confidence 4577887765 45 79999998872 3 345789999999999999987655 66553
No 124
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=80.62 E-value=4.7 Score=37.90 Aligned_cols=103 Identities=19% Similarity=0.193 Sum_probs=57.7
Q ss_pred hhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHH
Q 011237 9 ILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQ 88 (490)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (490)
+.++..+..++||+|.+. ...|.||++.+++ +|. + .+++..++.++
T Consensus 41 ~~~~~~~~l~vLl~~r~~--------------~g~walPGG~v~~--~E~-----------------~-~~aa~Rel~EE 86 (186)
T cd03670 41 HPKSGKPILQFVAIKRPD--------------SGEWAIPGGMVDP--GEK-----------------I-SATLKREFGEE 86 (186)
T ss_pred EecCCCCeeEEEEEEeCC--------------CCcCcCCeeeccC--CCC-----------------H-HHHHHHHHHHH
Confidence 344445567899999832 3679999999966 333 1 23344455555
Q ss_pred cCCeec-----------------cCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc---------cccccccccCCHH
Q 011237 89 LGFGVR-----------------DGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---------QILQEGCKWMSTQ 142 (490)
Q Consensus 89 ~gl~l~-----------------~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---------~~e~~~~~W~~~~ 142 (490)
.|+.+. .....-|...+..+.-...-|+.|.-|....++|+ ..++..+.|++..
T Consensus 87 t~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~~dpr~td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~ 166 (186)
T cd03670 87 ALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDID 166 (186)
T ss_pred HcccccccchhhhhhcchhhhhcccccEEEeccccCCCCCCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEcc
Confidence 543321 11222344433333101122667887766655442 3589999999987
Q ss_pred HHH
Q 011237 143 SCI 145 (490)
Q Consensus 143 ~~l 145 (490)
+..
T Consensus 167 ~l~ 169 (186)
T cd03670 167 SKL 169 (186)
T ss_pred ccc
Confidence 654
No 125
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=80.33 E-value=4.2 Score=35.19 Aligned_cols=80 Identities=13% Similarity=0.069 Sum_probs=52.4
Q ss_pred ccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccCcceeecccccCCCCCCCCeeeEEE
Q 011237 41 SDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVY 120 (490)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f 120 (490)
++.|.||++.++. +|. + .+++..++.++.|+.+....+..+.....+. +..-+.+
T Consensus 28 ~~~w~lPgG~ve~--~E~-----------------~-~~aa~REl~EE~g~~~~~~~l~~~~~~~~~~-----~~~~~~~ 82 (118)
T cd04674 28 RGKLALPGGFIEL--GET-----------------W-QDAVARELLEETGVAVDPADIRLFDVRSAPD-----GTLLVFG 82 (118)
T ss_pred CCeEECCceecCC--CCC-----------------H-HHHHHHHHHHHHCCcccccEEEEEEEEecCC-----CeEEEEE
Confidence 6779999999974 444 2 5678899999999998765555444433332 4455555
Q ss_pred EEeEcCCCc------cccccccccCCHHHHH
Q 011237 121 IMGKLLDGN------QILQEGCKWMSTQSCI 145 (490)
Q Consensus 121 ~~a~lp~~q------~~e~~~~~W~~~~~~l 145 (490)
|.+....+. +.|..++.|+.+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 113 (118)
T cd04674 83 LLPERRAADLPPFEPTDETTERAVVTAPSEL 113 (118)
T ss_pred EEeccccccCCCCCCCcceeeEEEccCCccc
Confidence 565444433 4577778887765543
No 126
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=80.28 E-value=6 Score=34.47 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=46.6
Q ss_pred HHHHHHHH-HcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeech
Q 011237 414 EAAILQAI-ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSL 477 (490)
Q Consensus 414 ~~~il~~l-~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~ 477 (490)
+.+|++.+ ..|+.|+.||+..+-.+ ..| +..++.--|.+|.+.|.|.+..+.+.|.|+-
T Consensus 8 E~eVM~ilW~~~~~t~~eI~~~l~~~---~ew--s~sTV~TLl~RL~KKg~l~~~kdgr~~~y~p 67 (123)
T COG3682 8 EWEVMEILWSRGPATVREIIEELPAD---REW--SYSTVKTLLNRLVKKGLLTRKKDGRAFRYSP 67 (123)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHhhc---ccc--cHHHHHHHHHHHHhccchhhhhcCCeeeeec
Confidence 34566654 56888999999998766 223 4557888899999999999999999999964
No 127
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=80.22 E-value=2.1 Score=32.66 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=32.4
Q ss_pred HHHHHHHc--CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccc
Q 011237 416 AILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 467 (490)
Q Consensus 416 ~il~~l~~--g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 467 (490)
+|++.+++ ++.+..||++.+- +...+++.+|.+|+.+|+|++.
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~g---------ls~~~aR~yL~~Le~eG~V~~~ 48 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALG---------LSIYQARYYLEKLEKEGKVERS 48 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHT---------S-HHHHHHHHHHHHHCTSEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHhC---------CCHHHHHHHHHHHHHCCCEEEe
Confidence 45666654 6789999998862 3466799999999999999864
No 128
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=76.56 E-value=9.9 Score=33.37 Aligned_cols=95 Identities=22% Similarity=0.291 Sum_probs=58.3
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
..+.||+||..| -+- + -+...|.||++.++. +|. ..+++..++.++.|+...
T Consensus 14 ~~~vlL~~~~~~-~~~----~--~~~~~W~lPgG~ie~--~E~------------------~~~aA~REl~EEtGl~~~- 65 (126)
T cd04662 14 RIEVLLVHPGGP-FWA----N--KDLGAWSIPKGEYTE--GED------------------PLLAAKREFSEETGFCVD- 65 (126)
T ss_pred cEEEEEEEccCc-ccc----C--CCCCEEECCcccCCC--CcC------------------HHHHHHHHHHHHhCCcce-
Confidence 347999999553 111 1 235679999998864 333 267899999999999876
Q ss_pred CcceeecccccCCCCCC------------CCeeeEEEEEeEcCCCc-----cccccccccCC
Q 011237 96 GGEWKLWKCVEEPEFGP------------GLTIHTVYIMGKLLDGN-----QILQEGCKWMS 140 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~------------~~~~dt~f~~a~lp~~q-----~~e~~~~~W~~ 140 (490)
..+..+..+..+. +. -...-..+|.+..|.|+ ..|.+...|.+
T Consensus 66 ~~~~~l~~~~~~~--~~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~ 125 (126)
T cd04662 66 GPFIDLGSLKQSG--GKVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFD 125 (126)
T ss_pred eeEEeEEEEECCC--CeEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeec
Confidence 3344444454443 21 11222345666666654 25777778875
No 129
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=76.01 E-value=8.3 Score=33.94 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=42.5
Q ss_pred HHHHHHH-HcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeec
Q 011237 415 AAILQAI-ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSS 476 (490)
Q Consensus 415 ~~il~~l-~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~ 476 (490)
.+|++.+ +.|+.|..||.+.+-...+ .+..++...|..|++.|.|.+......|.|+
T Consensus 7 ~~VM~vlW~~~~~t~~eI~~~l~~~~~-----~~~tTv~T~L~rL~~KG~v~~~k~gr~~~Y~ 64 (130)
T TIGR02698 7 WEVMRVVWTLGETTSRDIIRILAEKKD-----WSDSTIKTLLGRLVDKGCLTTEKEGRKFIYT 64 (130)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhhccC-----CcHHHHHHHHHHHHHCCceeeecCCCcEEEE
Confidence 3566655 5577899999988643322 3456788999999999999988777777775
No 130
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=75.50 E-value=10 Score=28.99 Aligned_cols=50 Identities=20% Similarity=0.239 Sum_probs=38.4
Q ss_pred HHHHHHHHHH-HcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc
Q 011237 412 AREAAILQAI-ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 470 (490)
Q Consensus 412 ~r~~~il~~l-~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 470 (490)
+.+.+|+..+ ..|+.|..||+..+- ++ ..++...|+.|+++|.|.+....
T Consensus 8 ~~E~~vy~~Ll~~~~~t~~eIa~~l~--i~-------~~~v~~~L~~L~~~GlV~~~~~~ 58 (68)
T PF01978_consen 8 ENEAKVYLALLKNGPATAEEIAEELG--IS-------RSTVYRALKSLEEKGLVEREEGR 58 (68)
T ss_dssp HHHHHHHHHHHHHCHEEHHHHHHHHT--SS-------HHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCEEEEcCc
Confidence 3445666654 578889999999872 33 46788999999999999988755
No 131
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=75.06 E-value=19 Score=31.58 Aligned_cols=99 Identities=17% Similarity=0.287 Sum_probs=57.8
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCee-cc
Q 011237 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGV-RD 95 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l-~~ 95 (490)
.+.||+|...+-. -..+.|++|++-... +|. ..+++..++.++.|+.+ ..
T Consensus 12 g~vLl~r~~~~~~---------~~~~~w~~PgG~ve~--gE~------------------~~~a~~Re~~EE~G~~~~~~ 62 (133)
T cd04685 12 DRVLLLRGDDPDS---------PGPDWWFTPGGGVEP--GES------------------PEQAARRELREETGITVADL 62 (133)
T ss_pred CeEEEEEEeCCCC---------CCCCEEECCcCCCCC--CCC------------------HHHHHHHHHHHHHCCccccc
Confidence 4799998765311 235689999987653 444 25678889999999988 32
Q ss_pred Ccc-eeecccccCCCCCCCCeeeEEEEEeEcCCCc-------cc---cccccccCCHHHHHH
Q 011237 96 GGE-WKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-------QI---LQEGCKWMSTQSCIN 146 (490)
Q Consensus 96 ~~~-~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-------~~---e~~~~~W~~~~~~l~ 146 (490)
..+ +.--+..+-. +.+-+=...||++.++.+. .. +....+|+++++..+
T Consensus 63 ~~~~~~~~~~f~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~ 122 (133)
T cd04685 63 GPPVWRRDAAFTFL--GVDGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAA 122 (133)
T ss_pred cceEEEEEEEEEec--CccceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhh
Confidence 222 1111112212 2222224568888887643 11 234689999777543
No 132
>PRK08999 hypothetical protein; Provisional
Probab=74.83 E-value=14 Score=37.23 Aligned_cols=100 Identities=16% Similarity=0.254 Sum_probs=57.9
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.+++|.|. +.++||.|.+... .-+.+|.+|++.+.. +|. ..+....++
T Consensus 8 ~~~vi~~~--~~~vLL~kR~~~~----------~~~g~w~~PgG~ve~--gE~------------------~~~aa~RE~ 55 (312)
T PRK08999 8 AAGVIRDA--DGRILLARRPEGK----------HQGGLWEFPGGKVEP--GET------------------VEQALAREL 55 (312)
T ss_pred EEEEEECC--CCeEEEEEecCCC----------CCCCeEECCccCCCC--CCC------------------HHHHHHHHH
Confidence 45555543 3489998875422 135689999875432 222 124556899
Q ss_pred HHHcCCeeccCc-ceeecccccCCCCCCCCeeeEEEEEeEcCCCc--cccccccccCCHHH
Q 011237 86 LEQLGFGVRDGG-EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQS 143 (490)
Q Consensus 86 l~~~gl~l~~~~-~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--~~e~~~~~W~~~~~ 143 (490)
.++.|+...... +.... +.-+ .+...-.||....+.+. ..|.....|+++++
T Consensus 56 ~EE~Gl~~~~~~~l~~~~-h~~~-----~~~~~i~~y~~~~~~~~~~~~e~~~~~Wv~~~e 110 (312)
T PRK08999 56 QEELGIEVTAARPLITVR-HDYP-----DKRVRLDVRRVTAWQGEPHGREGQPLAWVAPDE 110 (312)
T ss_pred HHHhCCceecceeEEEEE-EEcC-----CCeEEEEEEEEEEecCcccCccCCccEEecHHH
Confidence 999999866433 22222 2211 23445566666665443 34666778998664
No 133
>PF03551 PadR: Transcriptional regulator PadR-like family; InterPro: IPR005149 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response [].; PDB: 1XMA_B 2ESH_A 2DQL_B 3L9F_C 3ELK_B 4EJO_B 3L7W_A 3HHH_A 1YG2_A 3F8B_A ....
Probab=74.74 E-value=3.9 Score=32.02 Aligned_cols=53 Identities=13% Similarity=0.277 Sum_probs=41.4
Q ss_pred HHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc
Q 011237 417 ILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 470 (490)
Q Consensus 417 il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 470 (490)
|+..+.+++++.++|.+.+-...+. .|.....++...|..|+++|.|......
T Consensus 1 iL~~L~~~~~~Gyei~~~l~~~~~~-~~~i~~g~lY~~L~~Le~~gli~~~~~~ 53 (75)
T PF03551_consen 1 ILGLLSEGPMHGYEIKQELEERTGG-FWKISPGSLYPALKRLEEEGLIESRWEE 53 (75)
T ss_dssp HHHHHHHS-EEHHHHHHHHHHCSTT-TEETTHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred ChhhhccCCCcHHHHHHHHHHHhCC-CcccChhHHHHHHHHHHhCCCEEEeeec
Confidence 4566666888999999998665443 4556678899999999999999988776
No 134
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=74.37 E-value=6.2 Score=29.55 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=35.8
Q ss_pred HHHHHH-HcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 416 AILQAI-ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 416 ~il~~l-~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
+|++.+ ..++.|..||.+.+- ....++.-||..|++.|.|+...+
T Consensus 14 ~Il~~L~~~~~~t~~ela~~l~---------~~~~t~s~hL~~L~~aGli~~~~~ 59 (61)
T PF12840_consen 14 RILRLLASNGPMTVSELAEELG---------ISQSTVSYHLKKLEEAGLIEVERE 59 (61)
T ss_dssp HHHHHHHHCSTBEHHHHHHHHT---------S-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHhcCCCCCHHHHHHHHC---------CCHHHHHHHHHHHHHCCCeEEecc
Confidence 577777 677889999999872 335678899999999999987654
No 135
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=73.26 E-value=11 Score=32.41 Aligned_cols=88 Identities=17% Similarity=0.177 Sum_probs=62.9
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+..+||+|+.. ..|++|++.++. +|. ..+++..++.++.|+..
T Consensus 10 ~~~vLl~~~~~---------------~~w~lPgG~ve~--gE~------------------~~~aa~REl~EE~G~~~-- 52 (118)
T cd04665 10 DDGLLLVRHKD---------------RGWEFPGGHVEP--GET------------------IEEAARREVWEETGAEL-- 52 (118)
T ss_pred CCEEEEEEeCC---------------CEEECCccccCC--CCC------------------HHHHHHHHHHHHHCCcc--
Confidence 35899999841 249999998862 333 25678899999999987
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHH
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQS 143 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~ 143 (490)
..+.+...+..+. +. +...+.+|.|....+. ..|-..+.|.++..
T Consensus 53 ~~~~~l~~~~~~~--~~-~~~~~~~y~a~~~~~~~~~~~~E~~~~~~~~~~~ 101 (118)
T cd04665 53 GSLTLVGYYQVDL--FE-SGFETLVYPAVSAQLEEKASYLETDGPVLFKNEP 101 (118)
T ss_pred CceEEEEEEEecC--CC-CcEEEEEEEEEEEecccccccccccCcEEeccCC
Confidence 4445555555544 32 6778888888887775 46888999988543
No 136
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=73.15 E-value=4.1 Score=36.48 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=40.9
Q ss_pred HcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeechhcc
Q 011237 422 ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSLVEF 480 (490)
Q Consensus 422 ~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~~~~ 480 (490)
++|++|.+||+-+.- ...+.+.+.|..+...|++.+.-++++|+|.+...
T Consensus 3 q~Ga~T~eELA~~FG---------vttRkvaStLa~~ta~Grl~Rv~q~gkfRy~iPg~ 52 (155)
T PF07789_consen 3 QEGAKTAEELAGKFG---------VTTRKVASTLAMVTATGRLIRVNQNGKFRYCIPGG 52 (155)
T ss_pred ccCcccHHHHHHHhC---------cchhhhHHHHHHHHhcceeEEecCCCceEEeCCCC
Confidence 468899999987642 12445778899999999999999999999988765
No 137
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=73.09 E-value=9.6 Score=28.99 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccc
Q 011237 411 RAREAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLP 465 (490)
Q Consensus 411 ~~r~~~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~ 465 (490)
.+.-..|++.+ +|+.|+++|++.+....+.... -+...+...|..|.+.|.|+
T Consensus 16 n~~a~~Iw~~~-~g~~t~~ei~~~l~~~y~~~~~-~~~~dv~~fl~~L~~~glIe 68 (68)
T PF05402_consen 16 NETAAFIWELL-DGPRTVEEIVDALAEEYDVDPE-EAEEDVEEFLEQLREKGLIE 68 (68)
T ss_dssp -THHHHHHHH---SSS-HHHHHHHHHHHTT--HH-HHHHHHHHHHHHHHHTT---
T ss_pred cHHHHHHHHHc-cCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHCcCcC
Confidence 33344788888 4678999999998766542222 34667999999999999874
No 138
>PLN03143 nudix hydrolase; Provisional
Probab=72.17 E-value=8.2 Score=38.88 Aligned_cols=103 Identities=17% Similarity=0.104 Sum_probs=65.5
Q ss_pred eeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccCc
Q 011237 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (490)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~ 97 (490)
..+|+||.++|-- ...|-+|++.++.= ++. ..+.|+.|+.++-|+....+.
T Consensus 144 ~VlLVrQ~R~pvg----------~~~lE~PAG~lD~~-~ed------------------p~~aA~REL~EETG~~~~a~~ 194 (291)
T PLN03143 144 YAVLTEQVRVPVG----------KFVLELPAGMLDDD-KGD------------------FVGTAVREVEEETGIKLKLED 194 (291)
T ss_pred EEEEEEeEecCCC----------cEEEEecccccCCC-CCC------------------HHHHHHHHHHHHHCCccccce
Confidence 4899999998862 23699999888641 112 167899999999999876655
Q ss_pred ceeec---------ccccCCCCCCCCeeeEEEEEeEcC--C-------C--c----cccccccccCCHHHHHHHHHccC
Q 011237 98 EWKLW---------KCVEEPEFGPGLTIHTVYIMGKLL--D-------G--N----QILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 98 ~~~~~---------~w~~~~~~~~~~~~dt~f~~a~lp--~-------~--q----~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
+.... ...+-+- .-.-++ ++|++.-. . + + ..|.....|++-+++..+.++.|
T Consensus 195 lv~L~~~~~~~~g~~v~pspG-~~dE~i--~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~k 270 (291)
T PLN03143 195 MVDLTAFLDPSTGCRMFPSPG-GCDEEI--SLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADAK 270 (291)
T ss_pred EEEeeeccccCcCceEEecCC-ccCCeE--EEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhHH
Confidence 55442 2222220 112222 35553322 1 1 1 35777889999999988887655
No 139
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=71.85 E-value=19 Score=32.85 Aligned_cols=109 Identities=14% Similarity=0.044 Sum_probs=73.8
Q ss_pred CCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeec
Q 011237 15 NDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR 94 (490)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~ 94 (490)
.++.+||+||.. ..|.+|++.+++ +|. ..+++..++.++-|+..
T Consensus 33 ~~~~~LL~~~~~---------------~~~elPgG~vE~--gEt------------------~~eaA~REl~EETG~~~- 76 (156)
T TIGR02705 33 YKDQWLLTEHKR---------------RGLEFPGGKVEP--GET------------------SKEAAIREVMEETGAIV- 76 (156)
T ss_pred ECCEEEEEEEcC---------------CcEECCceecCC--CCC------------------HHHHHHHHHHHHhCcEe-
Confidence 345899999851 259999988764 444 26778999999999865
Q ss_pred cCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc-cccccccc-cCCHHHHHHHHHccCCCCCccChhhh
Q 011237 95 DGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-QILQEGCK-WMSTQSCINCLAEVKPSTDRVGPLVV 163 (490)
Q Consensus 95 ~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-~~e~~~~~-W~~~~~~l~~~~~~~~~~~~~~~~~~ 163 (490)
..+..+..+...+ +. ..+=...|+|....++ ..|..... +++..++.+.+...+.-+.+|-=-++
T Consensus 77 -~~~~~lg~~~~~~--~~-~~~~~~vf~A~~~~~~~~~e~~E~~~~~~~~~~~~~~~~g~~~s~~~~d~~~ 143 (156)
T TIGR02705 77 -KELHYIGQYEVEG--ES-TDFVKDVYFAEVSALESKDDYLETKGPVLLQEIPDIIKADPRFSFIMKDDVL 143 (156)
T ss_pred -eeeEEEEEEEecC--CC-cEEEEEEEEEEEeccccCCCceeeEeEEEHHHHHHHHhcCCcccEEEchHHH
Confidence 5666677766655 33 4555666666666444 34544444 79999999988887755555544433
No 140
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=71.14 E-value=11 Score=30.23 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccc
Q 011237 414 EAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLP 465 (490)
Q Consensus 414 ~~~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~ 465 (490)
-..|++.++ |+.|+++|++.+-.+.+. .-.+...+.+.|+.|.++|.|.
T Consensus 33 g~~Iw~lld-g~~tv~eI~~~L~~~Y~~--~e~~~~dV~~fL~~L~~~gli~ 81 (81)
T TIGR03859 33 AGEILELCD-GKRSLAEIIQELAQRFPA--AEEIEDDVIAFLAVARAKHWLE 81 (81)
T ss_pred HHHHHHHcc-CCCcHHHHHHHHHHHcCC--hhhHHHHHHHHHHHHHHCcCcC
Confidence 346888885 567999999998776664 2345668999999999998873
No 141
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=69.41 E-value=26 Score=31.27 Aligned_cols=93 Identities=19% Similarity=0.208 Sum_probs=63.1
Q ss_pred eeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccCc
Q 011237 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (490)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~ 97 (490)
+-||+|-..+|.-+- |-||++.++. ||. + .+++..++.++-||.++.
T Consensus 22 ~iLLvrR~~~p~~g~-----------WalPGG~ve~--GEt-----------------~-eeaa~REl~EETgL~~~~-- 68 (145)
T COG1051 22 RILLVRRANEPGAGY-----------WALPGGFVEI--GET-----------------L-EEAARRELKEETGLRVRV-- 68 (145)
T ss_pred EEEEEEecCCCCCCc-----------EeCCCccCCC--CCC-----------------H-HHHHHHHHHHHhCCcccc--
Confidence 899999988886543 9999998876 555 2 677999999999998543
Q ss_pred ceeecccccCCCCCCCC-eeeEEEEEeEcCCCc-----cccccccccCCHHHHH
Q 011237 98 EWKLWKCVEEPEFGPGL-TIHTVYIMGKLLDGN-----QILQEGCKWMSTQSCI 145 (490)
Q Consensus 98 ~~~~~~w~~~~~~~~~~-~~dt~f~~a~lp~~q-----~~e~~~~~W~~~~~~l 145 (490)
+..++-.=.+. ..+| +.=+.||.+..+.|+ +.++....|++..+..
T Consensus 69 ~~~~~v~~~~~--rd~r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~ 120 (145)
T COG1051 69 LELLAVFDDPG--RDPRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELP 120 (145)
T ss_pred eeEEEEecCCC--CCCceeEEEEEEEEEecCCCcccCChhhHhhcceecHhHcc
Confidence 33444444444 2255 333455567777775 2377788888855543
No 142
>PHA00738 putative HTH transcription regulator
Probab=68.86 E-value=11 Score=32.05 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=42.4
Q ss_pred HHHHHHHcC-CCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeechhc
Q 011237 416 AILQAIENG-VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSLVE 479 (490)
Q Consensus 416 ~il~~l~~g-~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~~~ 479 (490)
+|+..+.++ ++++.+|+..+ .+....+-.||..|++.|.|..........|+...
T Consensus 16 ~IL~lL~~~e~~~V~eLae~l---------~lSQptVS~HLKvLreAGLV~srK~Gr~vyY~Ln~ 71 (108)
T PHA00738 16 KILELIAENYILSASLISHTL---------LLSYTTVLRHLKILNEQGYIELYKEGRTLYAKIRE 71 (108)
T ss_pred HHHHHHHHcCCccHHHHHHhh---------CCCHHHHHHHHHHHHHCCceEEEEECCEEEEEECC
Confidence 567766665 57888888765 13455688899999999999999888877777654
No 143
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=67.87 E-value=9.2 Score=28.41 Aligned_cols=50 Identities=12% Similarity=0.225 Sum_probs=37.6
Q ss_pred HHHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccce
Q 011237 414 EAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLES 472 (490)
Q Consensus 414 ~~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~ 472 (490)
..+|++.+++ +..|+.|+++.+- ....+++-.|.+|+++|.+.+......
T Consensus 2 ~~~Il~~l~~~~~~s~~ela~~~~---------VS~~TiRRDl~~L~~~g~i~r~~GG~~ 52 (57)
T PF08220_consen 2 QQQILELLKEKGKVSVKELAEEFG---------VSEMTIRRDLNKLEKQGLIKRTHGGAV 52 (57)
T ss_pred HHHHHHHHHHcCCEEHHHHHHHHC---------cCHHHHHHHHHHHHHCCCEEEEcCEEE
Confidence 4567777765 5569999998752 235678999999999999987765543
No 144
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=67.72 E-value=14 Score=28.47 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=26.7
Q ss_pred CCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 425 VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 425 ~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
+.|+.||++.+- +. -..++..||+.|++.|.|.+...
T Consensus 25 ~Pt~rEIa~~~g--~~------S~~tv~~~L~~Le~kG~I~r~~~ 61 (65)
T PF01726_consen 25 PPTVREIAEALG--LK------STSTVQRHLKALERKGYIRRDPG 61 (65)
T ss_dssp ---HHHHHHHHT--SS------SHHHHHHHHHHHHHTTSEEEGCC
T ss_pred CCCHHHHHHHhC--CC------ChHHHHHHHHHHHHCcCccCCCC
Confidence 349999998873 11 24579999999999999987653
No 145
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=66.44 E-value=6.7 Score=43.59 Aligned_cols=51 Identities=25% Similarity=0.416 Sum_probs=38.0
Q ss_pred eEEEecCCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHH
Q 011237 224 HRFVAQGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSII 281 (490)
Q Consensus 224 ~~~li~g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l 281 (490)
..|-+.|=.|||+.|.... .-++++++.+.++..|++||.-.|..+ |+.-+
T Consensus 51 ALFavnGf~iLv~GgserK--S~fwklVrHldrVdaVLLthpg~dNLp-----ginsl 101 (934)
T KOG3592|consen 51 ALFAVNGFNILVNGGSERK--SCFWKLVRHLDRVDAVLLTHPGADNLP-----GINSL 101 (934)
T ss_pred eeEeecceEEeecCCcccc--cchHHHHHHHhhhhhhhhcccccCccc-----cchHH
Confidence 3444455578888887644 346677777888899999999999999 76554
No 146
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=65.69 E-value=14 Score=31.99 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=41.4
Q ss_pred HHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeechh
Q 011237 416 AILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSLV 478 (490)
Q Consensus 416 ~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~~ 478 (490)
+|+..+.+ |+.++-||++.+ + +...++-.||..|++.|.|..+.+.....|+..
T Consensus 20 ~IL~~L~~~~~~~v~ela~~l--~-------lsqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~ 74 (117)
T PRK10141 20 GIVLLLRESGELCVCDLCTAL--D-------QSQPKISRHLALLRESGLLLDRKQGKWVHYRLS 74 (117)
T ss_pred HHHHHHHHcCCcCHHHHHHHH--C-------cCHHHHHHHHHHHHHCCceEEEEEcCEEEEEEC
Confidence 56666643 677899998775 2 234568889999999999999888877777764
No 147
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=65.02 E-value=18 Score=29.01 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHc--CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeee
Q 011237 412 AREAAILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNS 475 (490)
Q Consensus 412 ~r~~~il~~l~~--g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~ 475 (490)
++..+|++.+.+ ++.|..||++.+ ++ ...++..+|..|++.|.|.+....+.|.-
T Consensus 5 ~r~~~Il~~l~~~~~~~t~~~ia~~l--~i-------~~~tv~r~l~~L~~~g~l~~~~~~~~y~l 61 (91)
T smart00346 5 ERGLAVLRALAEEPGGLTLAELAERL--GL-------SKSTAHRLLNTLQELGYVEQDGQNGRYRL 61 (91)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHh--CC-------CHHHHHHHHHHHHHCCCeeecCCCCceee
Confidence 344567777754 467999999987 22 35678999999999999988754444443
No 148
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=62.77 E-value=25 Score=33.02 Aligned_cols=99 Identities=9% Similarity=0.017 Sum_probs=60.1
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|-++.++. + +.-|.||++.+++-... ..++++.++.++-|+...
T Consensus 43 ~~~vLl~~R~~~~r~-------~--~G~~~~PGG~~e~~de~-------------------~~~tA~REl~EEtGl~~~- 93 (190)
T PRK10707 43 QPTLLLTQRSIHLRK-------H--AGQVAFPGGAVDPTDAS-------------------LIATALREAQEEVAIPPS- 93 (190)
T ss_pred CCEEEEEEeCCcccC-------C--CCcEEcCCcccCCCccc-------------------HHHHHHHHHHHHHCCCcc-
Confidence 347777775443322 2 22478898887642111 257899999999999653
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc-----cccccccccCCHHHHHHH
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----QILQEGCKWMSTQSCINC 147 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-----~~e~~~~~W~~~~~~l~~ 147 (490)
.+..+..-- +- -....|.+.-|++.+.... ..|.....|++..++++.
T Consensus 94 -~~~~lg~l~-~~--~~~~~~~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~ 146 (190)
T PRK10707 94 -AVEVIGVLP-PV--DSSTGYQVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHL 146 (190)
T ss_pred -ceEEEEEee-ee--eccCCcEEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCc
Confidence 333333221 11 1123566777777665443 468888999998887774
No 149
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=62.64 E-value=27 Score=24.52 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=32.0
Q ss_pred HHHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccc
Q 011237 414 EAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLP 465 (490)
Q Consensus 414 ~~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~ 465 (490)
..+|+..+.+ +..|..||++.+- +...++..|+..|++.|.|+
T Consensus 5 ~~~Il~~l~~~~~~t~~ela~~~~---------is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 5 QRKILNYLRENPRITQKELAEKLG---------ISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHCTTS-HHHHHHHHT---------S-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhC---------CCHHHHHHHHHHHHHCcCcC
Confidence 4467777766 4569999998873 34567899999999999874
No 150
>PRK05638 threonine synthase; Validated
Probab=62.04 E-value=17 Score=38.77 Aligned_cols=93 Identities=10% Similarity=0.053 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHcC---CCC----EEEcCCCCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhcCC
Q 011237 369 NMTDYFQSTYKFLEL---SPH----ALIPMHGRVNL--WPKHMLCGYLKNRRAREAAILQAIENGVETLFDIVANVYSEV 439 (490)
Q Consensus 369 ~~~~~~~SL~~L~~l---~~~----~ilPgHG~~~~--~~~~~i~~~l~~~~~r~~~il~~l~~g~~T~~ei~~~~~~~l 439 (490)
.-..-+..+.++.+- ..+ ++++|||.-.. ..++.+ ... .....|+..+.+++++..||.+.+-..
T Consensus 324 ssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~~~~~~~~~---~~~--~~r~~IL~~L~~~~~~~~el~~~l~~~- 397 (442)
T PRK05638 324 SSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGYGEGGREKF---TIG--GTKLEILKILSEREMYGYEIWKALGKP- 397 (442)
T ss_pred hHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCchhhh---ccc--chHHHHHHHHhhCCccHHHHHHHHccc-
Confidence 344555666665442 222 37899997432 112222 211 112368888888888999999887422
Q ss_pred CccchHHHHHHHHHHHHHHHHCCcccccccccee
Q 011237 440 PRSFWIPAASNVRLHVDHLADQNKLPKGFSLESF 473 (490)
Q Consensus 440 ~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~ 473 (490)
+...++.-||..|++.|.|....+.+.+
T Consensus 398 ------~s~~~v~~hL~~Le~~GLV~~~~~~g~~ 425 (442)
T PRK05638 398 ------LKYQAVYQHIKELEELGLIEEAYRKGRR 425 (442)
T ss_pred ------CCcchHHHHHHHHHHCCCEEEeecCCCc
Confidence 2345688999999999999875444433
No 151
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=60.74 E-value=12 Score=35.95 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=37.0
Q ss_pred HHHHHHHH-cCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccc
Q 011237 415 AAILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLE 471 (490)
Q Consensus 415 ~~il~~l~-~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~ 471 (490)
+.|+..++ .|+.|+.||++.+= + ....++-||+.|+++|.|+...+.+
T Consensus 14 ~~il~lL~~~g~~sa~elA~~Lg--i-------s~~avR~HL~~Le~~Glv~~~~~~~ 62 (218)
T COG2345 14 ERILELLKKSGPVSADELAEELG--I-------SPMAVRRHLDDLEAEGLVEVERQQG 62 (218)
T ss_pred HHHHHHHhccCCccHHHHHHHhC--C-------CHHHHHHHHHHHHhCcceeeeeccC
Confidence 46777776 47889999999872 2 2345899999999999998875553
No 152
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=57.67 E-value=16 Score=28.09 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=34.5
Q ss_pred HHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccc
Q 011237 415 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLE 471 (490)
Q Consensus 415 ~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~ 471 (490)
.+|++.+++ |..|+.||+..+- .....+.+.|+.|++.|+|.+.....
T Consensus 3 ~~i~~~l~~~~~~S~~eLa~~~~---------~s~~~ve~mL~~l~~kG~I~~~~~~~ 51 (69)
T PF09012_consen 3 QEIRDYLRERGRVSLAELAREFG---------ISPEAVEAMLEQLIRKGYIRKVDMSS 51 (69)
T ss_dssp HHHHHHHHHS-SEEHHHHHHHTT-----------HHHHHHHHHHHHCCTSCEEEEEE-
T ss_pred HHHHHHHHHcCCcCHHHHHHHHC---------cCHHHHHHHHHHHHHCCcEEEecCCC
Confidence 467777765 4559999998863 23456899999999999998765543
No 153
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=52.59 E-value=53 Score=27.98 Aligned_cols=60 Identities=18% Similarity=0.068 Sum_probs=41.8
Q ss_pred HHHHHHHc--CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc-ceeeechhc
Q 011237 416 AILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL-ESFNSSLVE 479 (490)
Q Consensus 416 ~il~~l~~--g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~-~~~~~~~~~ 479 (490)
.|++.+.+ +..|++||.+.+-..-+ .+...++.--|+.|++.|.|.+.... +..+|....
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~----~is~~TVYR~L~~L~e~Gli~~~~~~~~~~~Y~~~~ 74 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGP----RISLATVYRTLDLLEEAGLIRKIEFGDGESRYELST 74 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTT----T--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccC----CcCHHHHHHHHHHHHHCCeEEEEEcCCCcceEeecC
Confidence 46666554 46699999999875433 23456788899999999999976555 666665543
No 154
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=51.56 E-value=33 Score=24.72 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=35.0
Q ss_pred HHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeec
Q 011237 418 LQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSS 476 (490)
Q Consensus 418 l~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~ 476 (490)
+..+..++.|..+|.+.+- ....++..+++.|.++|.+......+...|.
T Consensus 3 l~~l~~~~~~~~~i~~~l~---------is~~~v~~~l~~L~~~g~i~~~~~~~~~~~~ 52 (66)
T smart00418 3 LKLLAEGELCVCELAEILG---------LSQSTVSHHLKKLREAGLVESRREGKRVYYS 52 (66)
T ss_pred HHHhhcCCccHHHHHHHHC---------CCHHHHHHHHHHHHHCCCeeeeecCCEEEEE
Confidence 3444456678999888862 2345688899999999999876655544443
No 155
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=51.30 E-value=39 Score=31.08 Aligned_cols=73 Identities=12% Similarity=-0.018 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHcCCeeccCc-ceeec--cccc--CCCCCCCCeeeEEEEEeEcCCC-----ccccccccccCCHHHHHHH
Q 011237 78 IESALNQILEQLGFGVRDGG-EWKLW--KCVE--EPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINC 147 (490)
Q Consensus 78 ~~~~~~~~l~~~gl~l~~~~-~~~~~--~w~~--~~~~~~~~~~dt~f~~a~lp~~-----q~~e~~~~~W~~~~~~l~~ 147 (490)
.+++..++.++.|+...... +.... .+.. .. +.-.+-..++|.+.++.+ |..|-....|+++++++++
T Consensus 81 ~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~--~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~ 158 (180)
T cd03676 81 EETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEA--GGLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRA 158 (180)
T ss_pred HHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCC--CcEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHH
Confidence 66799999999999766432 22111 1121 22 111223345566665433 3568889999999999999
Q ss_pred HHccC
Q 011237 148 LAEVK 152 (490)
Q Consensus 148 ~~~~~ 152 (490)
+.+++
T Consensus 159 l~~g~ 163 (180)
T cd03676 159 LKEGE 163 (180)
T ss_pred HHcCC
Confidence 98764
No 156
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=51.04 E-value=39 Score=28.47 Aligned_cols=57 Identities=16% Similarity=0.062 Sum_probs=40.2
Q ss_pred HHHHHHHc--CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc-ceeeec
Q 011237 416 AILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL-ESFNSS 476 (490)
Q Consensus 416 ~il~~l~~--g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~-~~~~~~ 476 (490)
.|++.+.+ ++.|++||.+.+-...+ .+...++.-.|+.|++.|.|.+.... +...|.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~----~i~~~TVYR~L~~L~~~Gli~~~~~~~~~~~y~ 64 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGP----SISLATVYRTLELLEEAGLVREIELGDGKARYE 64 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhCCCEEEEEeCCCceEEE
Confidence 45565543 46799999999875533 13446789999999999999976543 445553
No 157
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=50.93 E-value=28 Score=25.05 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcC--CCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccc
Q 011237 412 AREAAILQAIENG--VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 467 (490)
Q Consensus 412 ~r~~~il~~l~~g--~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 467 (490)
+|.-+|++++.+. +.|+.||++.+- +...++.-+|..|++.|.+.+.
T Consensus 3 ~ral~iL~~l~~~~~~~t~~eia~~~g---------l~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 3 ERALRILEALAESGGPLTLSEIARALG---------LPKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHHHHCHHCTBSCEEHHHHHHHHT---------S-HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHC---------cCHHHHHHHHHHHHHCcCeecC
Confidence 3455678877653 348999999873 3456789999999999999764
No 158
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=50.81 E-value=32 Score=24.83 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=30.7
Q ss_pred HHHHHHHHH-Hc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCC
Q 011237 413 REAAILQAI-EN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQN 462 (490)
Q Consensus 413 r~~~il~~l-~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g 462 (490)
|..+|+..+ +. ++.|..+|++.+. ....++..+++.|.+.|
T Consensus 1 R~~~il~~L~~~~~~it~~eLa~~l~---------vS~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 1 RQKQILKLLLESKEPITAKELAEELG---------VSRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHHHHTTTSBEHHHHHHHCT---------S-HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCcCHHHHHHHhC---------CCHHHHHHHHHHHHHCC
Confidence 345677777 33 3479999999864 34568999999999999
No 159
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=47.65 E-value=29 Score=32.89 Aligned_cols=48 Identities=8% Similarity=0.037 Sum_probs=39.2
Q ss_pred HHHHHHHcC--CCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccce
Q 011237 416 AILQAIENG--VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLES 472 (490)
Q Consensus 416 ~il~~l~~g--~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~ 472 (490)
+|++.+.+| +.|..||++.+. +...++..|+++|++.|.+.....-+.
T Consensus 166 ~Vl~~~~~g~~g~s~~eIa~~l~---------iS~~Tv~~~~~~~~~~~~~~~~~~~~~ 215 (225)
T PRK10046 166 AVRKLFKEPGVQHTAETVAQALT---------ISRTTARRYLEYCASRHLIIAEIVHGK 215 (225)
T ss_pred HHHHHHHcCCCCcCHHHHHHHhC---------ccHHHHHHHHHHHHhCCeEEEEeecCC
Confidence 688888876 469999999975 456789999999999999988766543
No 160
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=47.04 E-value=30 Score=34.07 Aligned_cols=52 Identities=17% Similarity=0.288 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccc
Q 011237 411 RAREAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLE 471 (490)
Q Consensus 411 ~~r~~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~ 471 (490)
.+|.++|++.+++ |..++.|+++.+- ....+++-+|..|+++|.+.+....-
T Consensus 4 ~eR~~~Il~~L~~~~~v~v~eLa~~l~---------VS~~TIRRDL~~Le~~g~l~r~~Gga 56 (256)
T PRK10434 4 RQRQAAILEYLQKQGKTSVEELAQYFD---------TTGTTIRKDLVILEHAGTVIRTYGGV 56 (256)
T ss_pred HHHHHHHHHHHHHcCCEEHHHHHHHHC---------CCHHHHHHHHHHHHHCCCEEEEECCE
Confidence 4677789999886 5669999998863 23457999999999999999877554
No 161
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognises and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae (Baker's yeast), and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue []. ; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_B 1U6G_A 3O6B_J 3O2P_E 4A0K_A 2HYE_C ....
Probab=46.32 E-value=59 Score=24.96 Aligned_cols=56 Identities=16% Similarity=0.351 Sum_probs=40.7
Q ss_pred HHHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc
Q 011237 414 EAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 470 (490)
Q Consensus 414 ~~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 470 (490)
.+.|.+.|+. +.++..+|+..+...+.... ......+...+++|.++|.+++..++
T Consensus 10 ~AaIVrimK~~k~~~~~~L~~~v~~~l~~~f-~~~~~~ik~~Ie~LIekeyi~Rd~~d 66 (68)
T PF10557_consen 10 DAAIVRIMKQEKKLSHDELINEVIEELKKRF-PPSVSDIKKRIESLIEKEYIERDEDD 66 (68)
T ss_dssp HHHHHHHHHHSSEEEHHHHHHHHHHHTTTTS----HHHHHHHHHHHHHTTSEEEESSE
T ss_pred hhheehhhhhcCceeHHHHHHHHHHHhcCCc-CCCHHHHHHHHHHHHHhhhhhcCCCC
Confidence 3467777765 34588999999987775433 34456789999999999999987665
No 162
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=44.88 E-value=52 Score=26.34 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=34.2
Q ss_pred HHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc
Q 011237 415 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 470 (490)
Q Consensus 415 ~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 470 (490)
.+|.+.++. |..++.+|...+- .| ...+.+.|++|++.|+|.+..++
T Consensus 5 ~qlRd~l~~~gr~s~~~Ls~~~~--~p-------~~~VeaMLe~l~~kGkverv~~~ 52 (78)
T PRK15431 5 IQVRDLLALRGRMEAAQISQTLN--TP-------QPMINAMLQQLESMGKAVRIQEE 52 (78)
T ss_pred HHHHHHHHHcCcccHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCeEeeccC
Confidence 356666654 5668999988864 22 22488999999999999987633
No 163
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=44.33 E-value=1.4e+02 Score=25.10 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=39.6
Q ss_pred CCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCCCceecCCCceEEE----CCEEEEEEeCCCCCCCCeE
Q 011237 264 HHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVA 339 (490)
Q Consensus 264 H~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~~~~~~~g~~l~l----gg~~l~vi~tPGHT~g~i~ 339 (490)
|.|.++.. .....+++..+...++.++.++..+. +++|+.+.+ |...+.+..+++=.+|.+.
T Consensus 15 ~~~s~~~~----~~~~~l~~~~~~~~v~in~~dA~~lg----------i~~Gd~V~v~~~~G~~~~~v~~~~~i~~g~v~ 80 (122)
T cd02791 15 QWHTMTRT----GRVPRLNAHVPEPYVEIHPEDAARLG----------LKEGDLVRVTSRRGEVVLRVRVTDRVRPGEVF 80 (122)
T ss_pred hhccCCcc----CChHHHHhhCCCCEEEECHHHHHHcC----------CCCCCEEEEEcCCEEEEEEEEECCCcCCCeEE
Confidence 44555533 04566666667778999998887752 456776665 2345666677766666655
Q ss_pred E
Q 011237 340 L 340 (490)
Q Consensus 340 l 340 (490)
+
T Consensus 81 ~ 81 (122)
T cd02791 81 V 81 (122)
T ss_pred E
Confidence 4
No 164
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=43.09 E-value=44 Score=32.07 Aligned_cols=58 Identities=9% Similarity=0.049 Sum_probs=41.6
Q ss_pred HHHHHHHHHc--CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeechhcc
Q 011237 414 EAAILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSLVEF 480 (490)
Q Consensus 414 ~~~il~~l~~--g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~~~~ 480 (490)
+++|.+.++. .+.|++|+.+.+ .....+++-+|+||+..|.+..+..-|+.-.+.+.+
T Consensus 160 l~~i~~~~~~~~~~~Taeela~~~---------giSRvTaRRYLeyl~~~~~l~a~i~yG~vGRP~r~Y 219 (224)
T COG4565 160 LQKVREALKEPDQELTAEELAQAL---------GISRVTARRYLEYLVSNGILEAEIHYGKVGRPERRY 219 (224)
T ss_pred HHHHHHHHhCcCCccCHHHHHHHh---------CccHHHHHHHHHHHHhcCeeeEEeeccccCCcceee
Confidence 3456666652 345888888776 245678999999999999999988877655544443
No 165
>PRK02079 pyrroloquinoline quinone biosynthesis protein PqqD; Provisional
Probab=42.76 E-value=61 Score=26.53 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccc
Q 011237 414 EAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLP 465 (490)
Q Consensus 414 ~~~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~ 465 (490)
-..|++.++ |..|+.+|++.+-..++... -+...+...++.|.++|.|.
T Consensus 38 g~~Iw~~~D-G~~tv~eIi~~L~~~y~~~~--~~~~DV~~fl~~L~~~g~i~ 86 (88)
T PRK02079 38 AGEILGLID-GKRTVAAIIAELQQQFPDVP--GLDEDVLEFLEVARAKHWIE 86 (88)
T ss_pred HHHHHHHcc-CCCCHHHHHHHHHHHccchh--hHHHHHHHHHHHHHHCcCEE
Confidence 346888885 56799999988855553221 14577999999999999886
No 166
>PLN02709 nudix hydrolase
Probab=41.76 E-value=1e+02 Score=29.87 Aligned_cols=95 Identities=19% Similarity=0.125 Sum_probs=56.9
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+...||+|.+...+ + -+.-|-||++.+++-+.. ..+.++.+..++.|+....
T Consensus 50 ~~~vLl~~Rs~~l~-------~--h~GqiafPGG~~e~~D~~-------------------~~~tAlRE~~EEiGl~~~~ 101 (222)
T PLN02709 50 ELRVILTKRSSTLS-------S--HPGEVALPGGKRDEEDKD-------------------DIATALREAREEIGLDPSL 101 (222)
T ss_pred ceEEEEEEcCCCCC-------C--CCCCccCCCcccCCCCCC-------------------HHHHHHHHHHHHHCCCchh
Confidence 44677777665432 1 133477777766543211 2578999999999997753
Q ss_pred -CcceeecccccCCCCCCCCeeeEEEEEeEcCCC---c----cccccccccCCHHHH
Q 011237 96 -GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---N----QILQEGCKWMSTQSC 144 (490)
Q Consensus 96 -~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~---q----~~e~~~~~W~~~~~~ 144 (490)
+.+..+...++ +..|--.=|||.+++. + ..|-+...|++-+..
T Consensus 102 v~vlg~L~~~~t------~sg~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~l 152 (222)
T PLN02709 102 VTIISVLEPFVN------KKGMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMF 152 (222)
T ss_pred eEEeeecCCeEC------CCCCEEEEEEEEecCCCCccccCChhhhheeEEecHHHH
Confidence 33333333232 3466666677777542 1 358888999984443
No 167
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=40.65 E-value=1.8e+02 Score=24.26 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=36.5
Q ss_pred cHHHHHHhCCCCEEEeChhhHHhhccCCCCCCceecCCCceEEEC----CEEEEEEeCCCCCCCCeEEE
Q 011237 277 GLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVG----GQRLTVVFSPGHTDGHVALL 341 (490)
Q Consensus 277 G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~~~~~~~g~~l~lg----g~~l~vi~tPGHT~g~i~l~ 341 (490)
....+++..+...+++++.++..+ -+++|+.+.+- ...+.+.-+++-.+|.+++.
T Consensus 24 ~~~~l~~~~~~~~v~inp~dA~~l----------gi~~Gd~V~v~~~~G~~~~~v~~~~~i~~g~v~~~ 82 (120)
T cd00508 24 RSPRLAALAPEPFVEIHPEDAARL----------GIKDGDLVRVSSRRGSVVVRARVTDRVRPGTVFMP 82 (120)
T ss_pred ccHHHHhhCCCCEEEECHHHHHHc----------CCCCCCEEEEEeCCEEEEEEEEECCCcCCCEEEEe
Confidence 455666666677899999888775 24577766652 24556667777777766554
No 168
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=40.49 E-value=78 Score=27.69 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=37.1
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHH
Q 011237 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (490)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (490)
|.+++|.+.-+..++|+.|.+- ..|.||++.+++ +|. ..+++..+
T Consensus 2 ~~~~~~~~~~~~~~ll~~r~~~---------------~~~~lPgG~ve~--~E~------------------~~~aa~Re 46 (126)
T cd04663 2 KCPAVLRRNGEVLELLVFEHPL---------------AGFQIVKGTVEP--GET------------------PEAAALRE 46 (126)
T ss_pred EEEEEEEeCCceEEEEEEEcCC---------------CcEECCCccCCC--CCC------------------HHHHHHHH
Confidence 4556666554334677776532 248999999874 444 26778899
Q ss_pred HHHHcCCee
Q 011237 85 ILEQLGFGV 93 (490)
Q Consensus 85 ~l~~~gl~l 93 (490)
+.++-|+..
T Consensus 47 l~EEtGl~~ 55 (126)
T cd04663 47 LQEESGLPS 55 (126)
T ss_pred HHHHHCCee
Confidence 999999986
No 169
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=37.27 E-value=73 Score=25.13 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc
Q 011237 414 EAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 470 (490)
Q Consensus 414 ~~~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 470 (490)
.+.|+..+..+-.|++|+....- + -..++.-+|..|.++|.|.+.+..
T Consensus 7 ~~~IL~~ls~~c~TLeeL~ekTg--i-------~k~~LlV~LsrL~k~GiI~Rkw~~ 54 (72)
T PF05584_consen 7 TQKILIILSKRCCTLEELEEKTG--I-------SKNTLLVYLSRLAKRGIIERKWRK 54 (72)
T ss_pred HHHHHHHHHhccCCHHHHHHHHC--C-------CHHHHHHHHHHHHHCCCeeeeeEE
Confidence 34677777776679999988752 2 245678899999999999998554
No 170
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=37.19 E-value=79 Score=26.85 Aligned_cols=27 Identities=19% Similarity=0.280 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCCCCEEEcCCCCCCCCh
Q 011237 373 YFQSTYKFLELSPHALIPMHGRVNLWP 399 (490)
Q Consensus 373 ~~~SL~~L~~l~~~~ilPgHG~~~~~~ 399 (490)
-.++|+.+..++++.++-|.|.....+
T Consensus 41 ~~e~l~~l~~~~peiliiGTG~~~~~~ 67 (109)
T cd05560 41 TAAHFEALLALQPEVILLGTGERQRFP 67 (109)
T ss_pred CHHHHHHHHhcCCCEEEEecCCCCCcC
Confidence 446677777788999999999865433
No 171
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=37.04 E-value=70 Score=22.14 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=30.9
Q ss_pred HHHHHHH-cCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccc
Q 011237 416 AILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 468 (490)
Q Consensus 416 ~il~~l~-~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 468 (490)
.+++.+. ++..+..++.+.+ + +...++..++..|++.|.|.+..
T Consensus 4 ~il~~l~~~~~~s~~~l~~~l--~-------~s~~tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 4 QILELLAQQGKVSVEELAELL--G-------VSEMTIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred HHHHHHHHcCCcCHHHHHHHH--C-------CCHHHHHHHHHHHHHCCCEEEee
Confidence 3444443 3456899999886 2 23557888999999999987644
No 172
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=36.98 E-value=2.2e+02 Score=23.88 Aligned_cols=55 Identities=9% Similarity=0.196 Sum_probs=36.4
Q ss_pred cHHHHHHhCCCCEEEeChhhHHhhccCCCCCCceecCCCceEEE----CCEEEEEEeCCCCCCCCeEEE
Q 011237 277 GLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVALL 341 (490)
Q Consensus 277 G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~~~~~~~g~~l~l----gg~~l~vi~tPGHT~g~i~l~ 341 (490)
....+++..+...+..|+.++..+. +++|+.+.+ |...+++.-+++=-+|.+.+.
T Consensus 24 ~~~~l~~~~~~~~v~i~p~dA~~lg----------i~~Gd~V~v~s~~G~~~~~v~v~~~i~~g~v~~~ 82 (122)
T cd02792 24 NSPYLAELQPEMFVEISPELAAERG----------IKNGDMVWVSSPRGKIKVKALVTDRVKPHEVGIP 82 (122)
T ss_pred CCHHHHhhCCCcEEEECHHHHHHcC----------CCCCCEEEEEcCCceEEEEEEECCCcCCCEEEEe
Confidence 4566777667778999999888753 456776665 224566666666666665543
No 173
>COG0640 ArsR Predicted transcriptional regulators [Transcription]
Probab=36.12 E-value=82 Score=24.73 Aligned_cols=52 Identities=15% Similarity=0.055 Sum_probs=38.2
Q ss_pred HHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeec
Q 011237 416 AILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSS 476 (490)
Q Consensus 416 ~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~ 476 (490)
+++..+.+ ...++.++...+ .....++..||..|.+.|.+....+.+...|+
T Consensus 29 ~il~~l~~~~~~~~~~l~~~~---------~~~~~~v~~hL~~L~~~glv~~~~~~~~~~~~ 81 (110)
T COG0640 29 EILSLLAEGGELTVGELAEAL---------GLSQSTVSHHLKVLREAGLVELRREGRLRLYR 81 (110)
T ss_pred HHHHHHHhcCCccHHHHHHHH---------CCChhHHHHHHHHHHHCCCeEEEecccEEEEe
Confidence 56666655 356777777776 23356788999999999999997777766665
No 174
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=36.06 E-value=1.1e+02 Score=26.97 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=37.8
Q ss_pred HcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc-----ceeeechhccc
Q 011237 422 ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL-----ESFNSSLVEFD 481 (490)
Q Consensus 422 ~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~-----~~~~~~~~~~~ 481 (490)
.+|+.|+++|++.+-. -.+++.--|..|.+.|.|.++... .+|.|....++
T Consensus 39 ~~~~~tvdelae~lnr---------~rStv~rsl~~L~~~GlV~Rek~~~~~Ggy~yiY~~i~~e 94 (126)
T COG3355 39 ENGPLTVDELAEILNR---------SRSTVYRSLQNLLEAGLVEREKVNLKGGGYYYLYKPIDPE 94 (126)
T ss_pred hcCCcCHHHHHHHHCc---------cHHHHHHHHHHHHHcCCeeeeeeccCCCceeEEEecCCHH
Confidence 4789999999998742 345677789999999999988655 45666444443
No 175
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.75 E-value=1.2e+02 Score=26.59 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeee
Q 011237 410 RRAREAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNS 475 (490)
Q Consensus 410 ~~~r~~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~ 475 (490)
+.+...+|++.+++ |..|+.|++...- +...++..|+..|++.|.|-..=.-|.|..
T Consensus 10 r~eLk~rIvElVRe~GRiTi~ql~~~TG---------asR~Tvk~~lreLVa~G~l~~~G~~GvF~s 67 (127)
T PF06163_consen 10 REELKARIVELVREHGRITIKQLVAKTG---------ASRNTVKRYLRELVARGDLYRHGRSGVFPS 67 (127)
T ss_pred HHHHHHHHHHHHHHcCCccHHHHHHHHC---------CCHHHHHHHHHHHHHcCCeEeCCCcccccc
Confidence 34445578888765 7779999998753 334578889999999999976444355544
No 176
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=34.65 E-value=77 Score=31.41 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=36.0
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 467 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 467 (490)
+++-++++|++|.+||-..+- ++ ..++..|+.+|.+.|.|.++
T Consensus 17 ~lLllL~egPkti~EI~~~l~--vs-------~~ai~pqiKkL~~~~LV~~~ 59 (260)
T COG4742 17 DLLLLLKEGPKTIEEIKNELN--VS-------SSAILPQIKKLKDKGLVVQE 59 (260)
T ss_pred HHHHHHHhCCCCHHHHHHHhC--CC-------cHHHHHHHHHHhhCCCEEec
Confidence 688888899999999998873 22 34689999999999999877
No 177
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=34.45 E-value=1.2e+02 Score=23.05 Aligned_cols=49 Identities=8% Similarity=-0.056 Sum_probs=35.8
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccccee
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESF 473 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~ 473 (490)
++++.+.++..+..+|++.+- ....++..++..|++.|......+.+++
T Consensus 4 ~il~~L~~~~~~~~eLa~~l~---------vS~~tv~~~l~~L~~~g~~i~~~~~g~~ 52 (69)
T TIGR00122 4 RLLALLADNPFSGEKLGEALG---------MSRTAVNKHIQTLREWGVDVLTVGKGYR 52 (69)
T ss_pred HHHHHHHcCCcCHHHHHHHHC---------CCHHHHHHHHHHHHHCCCeEEecCCceE
Confidence 577777777778888888862 2346789999999999996544444444
No 178
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=33.57 E-value=1.1e+02 Score=29.73 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=38.8
Q ss_pred HHHHHHH-cCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc-----ceeeec
Q 011237 416 AILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL-----ESFNSS 476 (490)
Q Consensus 416 ~il~~l~-~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~-----~~~~~~ 476 (490)
+|++.+. +|++.+.||++.+- +| .+.+.+|+..|++.|.|+.+... ++.+++
T Consensus 27 ~Il~lL~~k~plNvneiAe~lg--Lp-------qst~s~~ik~Le~aGlirT~t~karkG~QKiC~s 84 (308)
T COG4189 27 AILQLLHRKGPLNVNEIAEALG--LP-------QSTMSANIKVLEKAGLIRTETVKARKGSQKICIS 84 (308)
T ss_pred HHHHHHHHhCCCCHHHHHHHhC--Cc-------hhhhhhhHHHHHhcCceeeeeeccccCceeEeEe
Confidence 5666664 47789999999873 33 45688899999999999877544 666664
No 179
>PRK09416 lstR lineage-specific thermal regulator protein; Provisional
Probab=30.93 E-value=1.1e+02 Score=27.28 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc
Q 011237 412 AREAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 470 (490)
Q Consensus 412 ~r~~~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 470 (490)
+..--|+..+.++ ..-++|.+.+...- ...+.....++..-|..|+++|.|......
T Consensus 43 ~~~l~IL~lL~~~-~yGYeI~k~I~e~~-~g~~~~s~GtIYp~L~RLE~~GlI~s~~~~ 99 (135)
T PRK09416 43 DILLAILQLLMNE-KTGYELLQLLRQRG-ILTFEGNEGSLYTLLHRLEQNRFIQSSWDH 99 (135)
T ss_pred cHHHHHHHHHhCC-CCHHHHHHHHHHhc-CCcccCCCccHHHHHHHHHHCCCeEEeecC
Confidence 3344678888877 89999999986531 112233456788889999999999986643
No 180
>PRK13518 carboxylate-amine ligase; Provisional
Probab=29.71 E-value=45 Score=34.68 Aligned_cols=99 Identities=13% Similarity=-0.015 Sum_probs=66.6
Q ss_pred cccCcCCCCccccccccccccccchhh-----hHHHHHHHHcCCeeccCcceeeccccc-CCCCCCCCeeeEEEEEeEcC
Q 011237 53 HIQGEKSEPTISIQGSEKINLGKFDIE-----SALNQILEQLGFGVRDGGEWKLWKCVE-EPEFGPGLTIHTVYIMGKLL 126 (490)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~l~~~~~~~~~~w~~-~~~~~~~~~~dt~f~~a~lp 126 (490)
.+..|+.+|-|.|.-.-+.+++.+-.+ ..+.+.+++.|+.+.+-+-.||++|-+ +. .+..||.--+=-..++
T Consensus 50 ~~~~El~~~qvEi~T~~~~~~~el~~~L~~~r~~l~~aa~~~g~~l~a~GthP~~~~~~~~~--t~~~RY~~m~~~~~~~ 127 (357)
T PRK13518 50 RLDHELFKFVIETQTPLIEDPSEAGAALREVRDALVDHAAAHGYRIAAAGLHPAAKWRELEH--AEKPRYRSQLDRIQYP 127 (357)
T ss_pred cccccccCceEEEcCcCcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCCCCCccccCC--CCCcHHHHHHHhcccc
Confidence 366778778888887777777776554 468899999999999999999999976 43 5567775431111122
Q ss_pred CC-c--cccccccccCCHHHHHHHHHccCC
Q 011237 127 DG-N--QILQEGCKWMSTQSCINCLAEVKP 153 (490)
Q Consensus 127 ~~-q--~~e~~~~~W~~~~~~l~~~~~~~~ 153 (490)
.. | -..+.+..--+..+++..+...++
T Consensus 128 ~~~~~~~G~HVHVg~~d~d~av~v~n~lr~ 157 (357)
T PRK13518 128 QHRNTTAGLHVHVGVDDADKAVWIANELRW 157 (357)
T ss_pred hhcceeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 21 2 234556666677777766655543
No 181
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional
Probab=29.61 E-value=38 Score=35.39 Aligned_cols=130 Identities=16% Similarity=0.098 Sum_probs=77.4
Q ss_pred ecCCCCCCCcccccccccccCCCCC---cccccc---------ccCcCCCCccccccccccccccchhh-----hHHHHH
Q 011237 23 KQTPPPKFNDEEYDSYVDSDLWDLP---AIKLNH---------IQGEKSEPTISIQGSEKINLGKFDIE-----SALNQI 85 (490)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 85 (490)
+.+||+.+|-|+==-.||.+-.++. ...|+. +..|+.++-|.+...-+.++..+..+ ..+.+.
T Consensus 7 ~~~~~~t~GvE~E~~LVD~~t~~~~~~~~~vl~~~~~~~~~~~v~~El~~~qIEi~T~p~~~~~el~~eL~~~r~~l~~~ 86 (373)
T PRK13516 7 HVSEPFTLGVELELQLVNPHDYDLTQDSSDLLRAVKNQPTAGEIKPEITESMIEIATGVCRDIDQALGQLSAMRDVLVQA 86 (373)
T ss_pred CCCCCCeeEEEEEEEeEcCCCcCcCccHHHHHHhccccccccccChhhhCceEEEcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4456667776654456676655555 222332 33454555666666556676666554 478889
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCeeeEEEE-EeEcCCCcc--ccccccccCCHHHHHHHHHccCC
Q 011237 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYI-MGKLLDGNQ--ILQEGCKWMSTQSCINCLAEVKP 153 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~-~a~lp~~q~--~e~~~~~W~~~~~~l~~~~~~~~ 153 (490)
++++|+.|.+.+..||++|.+.+- -+..||.--.= .+-+...+. .-+.+...-++++++..+.+..+
T Consensus 87 A~~~G~~lva~GthP~~~~~~~~i-t~~~RY~~l~~~~~~~~~~~~i~G~HVHvg~~d~~~av~~~~~l~~ 156 (373)
T PRK13516 87 ADKLNIGICGGGTHPFQQWQRQRI-CDNPRFQYLSELYGYLAKQFTVFGQHVHIGCPSGDDALYLLHGLSR 156 (373)
T ss_pred HHHcCCEEEeecCCCCCCccccCC-CCcHHHHHHHHHhhhhhhhheeeeeEEEeCCCCHHHHHHHHHHHHh
Confidence 999999999999999999976331 33334541000 001111121 13556666677888888877754
No 182
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=29.47 E-value=93 Score=24.77 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=30.9
Q ss_pred HHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc
Q 011237 417 ILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 470 (490)
Q Consensus 417 il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 470 (490)
|+..+.. +..+..+|.+.+ .+...++..||..|++.|.|+.....
T Consensus 5 Il~~L~~~~~~~f~~L~~~l---------~lt~g~Ls~hL~~Le~~GyV~~~k~~ 50 (80)
T PF13601_consen 5 ILALLYANEEATFSELKEEL---------GLTDGNLSKHLKKLEEAGYVEVEKEF 50 (80)
T ss_dssp HHHHHHHHSEEEHHHHHHHT---------T--HHHHHHHHHHHHHTTSEEEEEE-
T ss_pred HHHHHhhcCCCCHHHHHHHh---------CcCHHHHHHHHHHHHHCCCEEEEEec
Confidence 4444433 556777777765 24567899999999999999977554
No 183
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=29.25 E-value=3.1e+02 Score=22.73 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=35.6
Q ss_pred HHHHHHhCCCCEEEeChhhHHhhccCCCCCCceecCCCceEEE----CCEEEEEEeCCCCCCCCeEE
Q 011237 278 LSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVAL 340 (490)
Q Consensus 278 ~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~~~~~~~g~~l~l----gg~~l~vi~tPGHT~g~i~l 340 (490)
...+.+..+...+++|+.++..+. +++|+.+.+ |...+++.-+++-.+|.+.+
T Consensus 21 ~~~l~~~~~~~~v~i~p~dA~~lg----------i~~Gd~V~v~s~~G~~~~~v~~~~~i~~g~v~~ 77 (116)
T cd02786 21 LPELRAKEGEPTLLIHPADAAARG----------IADGDLVVVFNDRGSVTLRAKVTDDVPPGVVVA 77 (116)
T ss_pred CHHHHhhCCCCEEEECHHHHHHcC----------CCCCCEEEEEcCCeEEEEEEEECCCCCCCEEEe
Confidence 355665556778999999888753 456776655 33456666777777776654
No 184
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=28.69 E-value=96 Score=29.18 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=33.9
Q ss_pred HHHHHHH-cCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccc
Q 011237 416 AILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 467 (490)
Q Consensus 416 ~il~~l~-~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 467 (490)
+|+..+. .|+.|..+|++.+- +...++..||+.|++.|.|.+.
T Consensus 5 ~IL~~L~~~~~~t~~eLA~~lg---------is~~tV~~~L~~Le~~GlV~r~ 48 (203)
T TIGR02702 5 DILSYLLKQGQATAAALAEALA---------ISPQAVRRHLKDLETEGLIEYE 48 (203)
T ss_pred HHHHHHHHcCCCCHHHHHHHHC---------cCHHHHHHHHHHHHHCCCeEEe
Confidence 5666653 56789999999872 2345799999999999999876
No 185
>PRK12423 LexA repressor; Provisional
Probab=28.43 E-value=1.3e+02 Score=28.32 Aligned_cols=52 Identities=25% Similarity=0.183 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCCC--CHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 410 RRAREAAILQAIENGVE--TLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 410 ~~~r~~~il~~l~~g~~--T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
+++.++.+.+.+.++.. |..||++.+- + .....+..||+.|++.|.|.+...
T Consensus 8 q~~il~~l~~~i~~~g~~Ps~~eia~~~g--~------~s~~~v~~~l~~L~~~G~l~~~~~ 61 (202)
T PRK12423 8 RAAILAFIRERIAQAGQPPSLAEIAQAFG--F------ASRSVARKHVQALAEAGLIEVVPN 61 (202)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHhC--C------CChHHHHHHHHHHHHCCCEEecCC
Confidence 34445556666665533 8999998751 1 123457789999999999987655
No 186
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=28.08 E-value=1.4e+02 Score=29.34 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHcCCeecc---CcceeecccccCCCC-------C--CCCeeeEEEEEeEcCCC----ccccccccccCCH
Q 011237 78 IESALNQILEQLGFGVRD---GGEWKLWKCVEEPEF-------G--PGLTIHTVYIMGKLLDG----NQILQEGCKWMST 141 (490)
Q Consensus 78 ~~~~~~~~l~~~gl~l~~---~~~~~~~~w~~~~~~-------~--~~~~~dt~f~~a~lp~~----q~~e~~~~~W~~~ 141 (490)
.+++..++.++.|+.+.. +.+....+..-..+. + -.+-+|..||......+ |..|.....|+++
T Consensus 118 ~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~ 197 (247)
T PLN02552 118 KNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNR 197 (247)
T ss_pred HHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEeH
Confidence 467999999999998543 334443322111100 0 02577888776322222 3679999999999
Q ss_pred HHHHHHHHcc
Q 011237 142 QSCINCLAEV 151 (490)
Q Consensus 142 ~~~l~~~~~~ 151 (490)
++..+++...
T Consensus 198 ~el~~~~~~~ 207 (247)
T PLN02552 198 EELKEMMRKE 207 (247)
T ss_pred HHHHHHHhhc
Confidence 9998877654
No 187
>PF13034 DUF3895: Protein of unknown function (DUF3895)
Probab=27.81 E-value=1.6e+02 Score=23.60 Aligned_cols=49 Identities=10% Similarity=-0.088 Sum_probs=33.0
Q ss_pred CCCHHHHHHHhhcC--CCc----cchHHHHHHHHHHHHHHHHCCcccccccccee
Q 011237 425 VETLFDIVANVYSE--VPR----SFWIPAASNVRLHVDHLADQNKLPKGFSLESF 473 (490)
Q Consensus 425 ~~T~~ei~~~~~~~--l~~----~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~ 473 (490)
..++.|+++.+... .+. ...+-+-..+..||++|+.+|++.....+++.
T Consensus 18 ~Isa~elcE~LI~~~~~~~~rysTgKpkiY~~Vc~yLe~L~~eg~l~~i~~~~~~ 72 (78)
T PF13034_consen 18 EISARELCEYLIENGGSPNKRYSTGKPKIYPYVCNYLEYLVKEGKLSFIENDGTR 72 (78)
T ss_pred cccHHHHHHHHHHcCCCccccccCCCceeHHHHHHHHHHHHHCCeEEEEecCcch
Confidence 45888888887543 221 11233344688999999999999877766543
No 188
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=27.10 E-value=1.7e+02 Score=22.97 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeee
Q 011237 412 AREAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNS 475 (490)
Q Consensus 412 ~r~~~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~ 475 (490)
+-...|+..+.+|+.+..+|+..+ + +....+..+|+.|++.|.|.. .++.|.-
T Consensus 6 ~Ii~~IL~~l~~~~~~~t~i~~~~--~-------L~~~~~~~yL~~L~~~gLI~~--~~~~Y~l 58 (77)
T PF14947_consen 6 EIIFDILKILSKGGAKKTEIMYKA--N-------LNYSTLKKYLKELEEKGLIKK--KDGKYRL 58 (77)
T ss_dssp HHHHHHHHHH-TT-B-HHHHHTTS--T---------HHHHHHHHHHHHHTTSEEE--ETTEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHh--C-------cCHHHHHHHHHHHHHCcCeeC--CCCEEEE
Confidence 334578888876777777777443 1 345578899999999999943 4444443
No 189
>PF02186 TFIIE_beta: TFIIE beta subunit core domain; InterPro: IPR003166 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This entry represents the beta subunit of the transcription factor TFIIE.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005673 transcription factor TFIIE complex; PDB: 1D8K_A 1D8J_A.
Probab=27.03 E-value=1.9e+02 Score=22.25 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=29.5
Q ss_pred HHHHHHHHc--CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeee
Q 011237 415 AAILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNS 475 (490)
Q Consensus 415 ~~il~~l~~--g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~ 475 (490)
..+.+.|++ .+.|++||...+.-++. ...+..|....+|+..-..+.|.|
T Consensus 8 ~~~VeymK~r~~Plt~~eI~d~l~~d~~-----------~~~~~~Lk~npKI~~d~~~~~f~f 59 (65)
T PF02186_consen 8 AKAVEYMKKRDHPLTLEEILDYLSLDIG-----------KKLKQWLKNNPKIEYDPDGNTFSF 59 (65)
T ss_dssp HHHHHHHHHH-S-B-HHHHHHHHTSSS------------HHHHHHHHH-TTEEEE-TT-CEEE
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHcCCCC-----------HHHHHHHHcCCCEEEecCCCEEEe
Confidence 344444443 57899999999873433 235677778888887766667776
No 190
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=26.92 E-value=1.3e+02 Score=29.33 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccce
Q 011237 411 RAREAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLES 472 (490)
Q Consensus 411 ~~r~~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~ 472 (490)
.+|.++|++.+++ |..+..|+++.+- ....+++-.|..|+++|.+.+......
T Consensus 4 ~~R~~~Il~~l~~~~~~~~~ela~~l~---------vS~~TirRdL~~Le~~g~i~r~~gga~ 57 (251)
T PRK13509 4 AQRHQILLELLAQLGFVTVEKVIERLG---------ISPATARRDINKLDESGKLKKVRNGAE 57 (251)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHC---------cCHHHHHHHHHHHHHCCCEEEecCCcc
Confidence 4566788888876 5569999998852 234578889999999999988665543
No 191
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=26.87 E-value=1.1e+02 Score=29.96 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccc
Q 011237 411 RAREAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLE 471 (490)
Q Consensus 411 ~~r~~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~ 471 (490)
.+|.++|++.+++ +..++.|+.+.+- .-..+++--|..|+++|++.+..+..
T Consensus 4 ~~R~~~Il~~l~~~~~~~~~ela~~l~---------vS~~TiRRdL~~Le~~g~l~r~~GGa 56 (252)
T PRK10906 4 TQRHDAIIELVKQQGYVSTEELVEHFS---------VSPQTIRRDLNDLAEQNKILRHHGGA 56 (252)
T ss_pred HHHHHHHHHHHHHcCCEeHHHHHHHhC---------CCHHHHHHHHHHHHHCCCEEEecCCE
Confidence 4567788888876 4459999998761 23456888899999999998876554
No 192
>TIGR02719 repress_PhaQ poly-beta-hydroxybutyrate-responsive repressor. Members of this family are transcriptional regulatory proteins found in the vicinity of poly-beta-hydroxybutyrate (PHB) operons in several species of Bacillus. This protein appears to have repressor activity modulated by PHB itself. This protein belongs to the larger PadR family (see pfam03551).
Probab=26.57 E-value=1.6e+02 Score=26.30 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=38.2
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 468 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 468 (490)
-|+..+.++++.-++|.+.+-. .. .+.....++...|..|+++|.|....
T Consensus 28 ~IL~~L~~~p~hGYeI~q~l~~-~g--~~~v~~GtLYp~L~RLE~~GlI~~~~ 77 (138)
T TIGR02719 28 FLLLCLKDWNLHGYKLIQMLMD-FG--FSSVDQGNVYRTLRKLEKDNLISSQW 77 (138)
T ss_pred HHHHHHccCCCCHHHHHHHHHH-cC--CCCCCcChHHHHHHHHHHCCCEEEEe
Confidence 4788888888899999998743 22 23344567888999999999998753
No 193
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=26.44 E-value=1.5e+02 Score=27.88 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=35.3
Q ss_pred HHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 415 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 415 ~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
.+++..+.+ |+.+..||++.+- + ...++..||..|++.|.|.+...
T Consensus 146 ~~IL~~l~~~g~~s~~eia~~l~--i-------s~stv~r~L~~Le~~GlI~r~~~ 192 (203)
T TIGR01884 146 LKVLEVLKAEGEKSVKNIAKKLG--K-------SLSTISRHLRELEKKGLVEQKGR 192 (203)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCEEEEcC
Confidence 356777665 6679999998873 2 34568899999999999998753
No 194
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=26.41 E-value=2.2e+02 Score=20.71 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=34.9
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeec
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSS 476 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~ 476 (490)
.|+..+..++.+..||...+- + ...++..+++.|.+.|.+..........|.
T Consensus 11 ~il~~l~~~~~~~~ei~~~~~--i-------~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~ 62 (78)
T cd00090 11 RILRLLLEGPLTVSELAERLG--L-------SQSTVSRHLKKLEEAGLVESRREGRRVYYS 62 (78)
T ss_pred HHHHHHHHCCcCHHHHHHHHC--c-------CHhHHHHHHHHHHHCCCeEEEEeccEEEEE
Confidence 456655555578888887652 2 235678889999999999876555333343
No 195
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=26.10 E-value=73 Score=26.40 Aligned_cols=51 Identities=10% Similarity=0.101 Sum_probs=38.4
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 467 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 467 (490)
-|+..+.+++..-+||.+.+-... ...|.+...++..-|..|+++|.|...
T Consensus 8 ~iL~~L~~~~~~GYei~~~l~~~~-~~~~~i~~gtlY~~L~rLe~~GlI~~~ 58 (100)
T TIGR03433 8 LILKTLSLGPLHGYGIAQRIQQIS-EDVLQVEEGSLYPALHRLERRGWIAAE 58 (100)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHc-CCccccCCCcHHHHHHHHHHCCCeEEE
Confidence 477778778889999999875432 233444556677789999999999985
No 196
>TIGR02050 gshA_cyan_rel uncharacterized enzyme. This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believe to make glutathione, and the function is unknown.
Probab=26.09 E-value=49 Score=33.22 Aligned_cols=96 Identities=11% Similarity=0.105 Sum_probs=64.7
Q ss_pred ccCcCCCCccccccccccccccchhh-----hHHHHHHHHcCCeeccCcceeecccccCCCCCCCCeeeEEE--EEeEcC
Q 011237 54 IQGEKSEPTISIQGSEKINLGKFDIE-----SALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVY--IMGKLL 126 (490)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f--~~a~lp 126 (490)
+..|+.++-|++...-+.++..+..+ ..+.++++++|+.|-+.+..|+++|...+ ..+..||+--+ | +.+-
T Consensus 38 ~~~El~~~qiEi~t~p~~~~~~l~~~l~~~~~~l~~~a~~~g~~l~~~G~hP~~~~~~~~-~~~~~RY~~m~~~~-g~~~ 115 (287)
T TIGR02050 38 FKHELFESQVELATPVCTTLAEAAAQIRAVRARLVQAASDHGLRICGAGTHPFARWRRQE-VADNPRYQRLLERY-GYVA 115 (287)
T ss_pred cChhhhccEEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCC-CCcHHHHHHHHHHH-HHHH
Confidence 66778788888887777776666544 47889999999999999999999997744 26667776221 0 1100
Q ss_pred CCc--cccccccccCCHHHHHHHHHcc
Q 011237 127 DGN--QILQEGCKWMSTQSCINCLAEV 151 (490)
Q Consensus 127 ~~q--~~e~~~~~W~~~~~~l~~~~~~ 151 (490)
..+ .+-+.+...-+++++++.+...
T Consensus 116 ~~~~~~g~hVhv~v~d~~~~i~~~n~l 142 (287)
T TIGR02050 116 RQQLVFGLHVHVGVPSPDDAVAVLNRL 142 (287)
T ss_pred HhHceeeEEEEeCCCCHHHHHHHHHHH
Confidence 011 2355666666777777766554
No 197
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=26.01 E-value=2.6e+02 Score=22.73 Aligned_cols=29 Identities=7% Similarity=0.282 Sum_probs=20.3
Q ss_pred CeeeEEEEEeEcCCCccccccccccCCHHH
Q 011237 114 LTIHTVYIMGKLLDGNQILQEGCKWMSTQS 143 (490)
Q Consensus 114 ~~~dt~f~~a~lp~~q~~e~~~~~W~~~~~ 143 (490)
++..-.+|.+.+..+. .+.....|+++++
T Consensus 73 ~~~~~~~~~~~~~~~~-~~~~~~~W~~~ee 101 (118)
T cd03431 73 FRLTLHVYLARLEGDL-LAPDEGRWVPLEE 101 (118)
T ss_pred eEEEEEEEEEEEeCCC-cCccccEEccHHH
Confidence 5788888888776653 3455678999654
No 198
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=24.93 E-value=1.4e+02 Score=29.04 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccce
Q 011237 411 RAREAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLES 472 (490)
Q Consensus 411 ~~r~~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~ 472 (490)
.+|..+|++.+++ +..+..|+++.+- ....+++-.|..|+++|++.+..+...
T Consensus 3 ~~R~~~Il~~l~~~~~~~~~eLa~~l~---------VS~~TiRRdL~~L~~~~~l~r~~Gga~ 56 (240)
T PRK10411 3 AARQQAIVDLLLNHTSLTTEALAEQLN---------VSKETIRRDLNELQTQGKILRNHGRAK 56 (240)
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHC---------cCHHHHHHHHHHHHHCCCEEEecCeEE
Confidence 3566678888765 5669999998872 335678999999999999988554443
No 199
>PRK09462 fur ferric uptake regulator; Provisional
Probab=24.73 E-value=1.9e+02 Score=25.68 Aligned_cols=58 Identities=10% Similarity=0.033 Sum_probs=40.8
Q ss_pred HHHHHHHc---CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccc-ccceeeech
Q 011237 416 AILQAIEN---GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF-SLESFNSSL 477 (490)
Q Consensus 416 ~il~~l~~---g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~-~~~~~~~~~ 477 (490)
.|++.+.+ ++.|++||...+-...+. +...+|.-.|+.|++.|.|.+.. .++...|..
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~~~~~~----i~~aTVYR~L~~L~e~Gli~~~~~~~~~~~y~~ 82 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEE----IGLATVYRVLNQFDDAGIVTRHNFEGGKSVFEL 82 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCC----CCHHHHHHHHHHHHHCCCEEEEEcCCCcEEEEe
Confidence 56666642 467999999998654432 23457888899999999998654 455566643
No 200
>PF10771 DUF2582: Protein of unknown function (DUF2582); InterPro: IPR019707 This entry represents conserved proteins found in bacteria and archaea. The function is not known. ; PDB: 2L02_B 2L01_A.
Probab=24.54 E-value=77 Score=24.43 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=39.4
Q ss_pred HHHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeec
Q 011237 414 EAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSS 476 (490)
Q Consensus 414 ~~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~ 476 (490)
.-.|.+++.+ |..|+.+|.+..- ++ ..++..-+.+|.++|+|.....++.+..+
T Consensus 10 AG~Vw~~L~~~~~~s~~el~k~~~--l~-------~~~~~~AiGWLarE~KI~~~~~~~~~~v~ 64 (65)
T PF10771_consen 10 AGKVWQLLNENGEWSVSELKKATG--LS-------DKEVYLAIGWLARENKIEFEEKNGELYVS 64 (65)
T ss_dssp HHHHHHHHCCSSSEEHHHHHHHCT---S-------CHHHHHHHHHHHCTTSEEEEEETTEEEEE
T ss_pred HHHHHHHHhhCCCcCHHHHHHHhC--cC-------HHHHHHHHHHHhccCceeEEeeCCEEEEE
Confidence 3478888877 6779999996642 22 23456669999999999988888766543
No 201
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=24.08 E-value=82 Score=34.70 Aligned_cols=38 Identities=26% Similarity=0.252 Sum_probs=28.9
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccC
Q 011237 232 ALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVD 271 (490)
Q Consensus 232 ~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G 271 (490)
.+|+|.|+..+...++.++ +.-++..|++-|+|+|-.-
T Consensus 421 ~VlvDnGsTeEDipA~~~~--k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 421 LVLVDNGSTEEDIPAIKQL--KAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred EEEEcCCCcccccHHHHHH--HhcCCCEEEEcCCCCcchh
Confidence 5799999998766666554 2346778999999999754
No 202
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=24.00 E-value=2e+02 Score=24.32 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=20.3
Q ss_pred HHHHHHHHcCC-CCEEEcCCCCCCCChHHHHH
Q 011237 374 FQSTYKFLELS-PHALIPMHGRVNLWPKHMLC 404 (490)
Q Consensus 374 ~~SL~~L~~l~-~~~ilPgHG~~~~~~~~~i~ 404 (490)
.++|..+...+ +++++-|-|.....+...+.
T Consensus 41 ~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~ 72 (109)
T cd00248 41 PEALLPLLAEDRPDILLIGTGAEIAFLPRALR 72 (109)
T ss_pred HHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHH
Confidence 44566666666 99999999986543333333
No 203
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=23.68 E-value=1.8e+02 Score=21.12 Aligned_cols=46 Identities=15% Similarity=0.087 Sum_probs=32.3
Q ss_pred HHHHHHHc-CC--CCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc
Q 011237 416 AILQAIEN-GV--ETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 470 (490)
Q Consensus 416 ~il~~l~~-g~--~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 470 (490)
.++..+.. ++ .|..||++.+. +...++-..++.|+++|.|.+....
T Consensus 9 ~vL~~l~~~~~~~~t~~~la~~l~---------~~~~~vs~~v~~L~~~Glv~r~~~~ 57 (62)
T PF12802_consen 9 RVLMALARHPGEELTQSELAERLG---------ISKSTVSRIVKRLEKKGLVERERDP 57 (62)
T ss_dssp HHHHHHHHSTTSGEEHHHHHHHHT---------S-HHHHHHHHHHHHHTTSEEEEE-S
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHC---------cCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 34555443 33 58999998874 2345688889999999999887654
No 204
>cd02782 MopB_CT_1 The MopB_CT_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=23.65 E-value=3.4e+02 Score=23.10 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=35.1
Q ss_pred cHHHHHHhCCCCEEEeChhhHHhhccCCCCCCceecCCCceEEE----CCEEEEEEeCCCCCCCCeEEE
Q 011237 277 GLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVALL 341 (490)
Q Consensus 277 G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~~~~~~~g~~l~l----gg~~l~vi~tPGHT~g~i~l~ 341 (490)
....+++..+...+++|+.++..+. +++|+.+.+ |...+++.-+++--+|.+.+.
T Consensus 22 ~~~~l~~~~~~~~v~i~p~dA~~~g----------i~~Gd~V~v~s~~g~~~~~~~~~~~v~~g~v~~~ 80 (129)
T cd02782 22 NDPRLVKGRNRCTLRIHPDDAAALG----------LADGDKVRVTSAAGSVEAEVEVTDDMMPGVVSLP 80 (129)
T ss_pred hCchhhccCCCceEEECHHHHHHcC----------CCCCCEEEEEcCCCeEEEEEEECCCcCCCeEEee
Confidence 4445555566778999998887752 456666655 234566667777666766543
No 205
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=23.49 E-value=24 Score=26.22 Aligned_cols=20 Identities=40% Similarity=0.557 Sum_probs=17.5
Q ss_pred cccccccCCCCCcccccccc
Q 011237 36 DSYVDSDLWDLPAIKLNHIQ 55 (490)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~ 55 (490)
++--||||+.||...|++|-
T Consensus 36 ~skKdsdLyqLPpslLRRLy 55 (59)
T PF03823_consen 36 HSKKDSDLYQLPPSLLRRLY 55 (59)
T ss_pred ccccCcchhhCCHHHHHHHH
Confidence 66789999999999998875
No 206
>cd02790 MopB_CT_Formate-Dh_H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=22.65 E-value=3.3e+02 Score=22.43 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=43.0
Q ss_pred EEEecCCCccccCc-hhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCCCceecCCCceEEEC----CEEEEEEeCCCC
Q 011237 259 IVFVTHHHRDHVDG-EFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVG----GQRLTVVFSPGH 333 (490)
Q Consensus 259 ~IviTH~H~DH~G~-a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~~~~~~~g~~l~lg----g~~l~vi~tPGH 333 (490)
.+++|-.+.+|+.. ........+++..+...+++++.++..+ -+++|+.+.+- ...+.+.-+.+-
T Consensus 5 ~~l~t~~~~~~~~s~~~~~~~~~l~~~~~~~~v~in~~dA~~l----------gi~~Gd~V~v~~~~G~~~~~v~i~~~i 74 (116)
T cd02790 5 LVLTTGRVLYHYHTGTMTRRAEGLDAIAPEEYVEINPEDAKRL----------GIEDGEKVRVSSRRGSVEVRARVTDRV 74 (116)
T ss_pred EEEEecchHHHhcccccccccHHHHhhCCCcEEEECHHHHHHc----------CCCCCCEEEEEcCCEEEEEEEEECCCc
Confidence 45555545553320 0011445666666677899999888765 34577766652 234566667777
Q ss_pred CCCCeEEE
Q 011237 334 TDGHVALL 341 (490)
Q Consensus 334 T~g~i~l~ 341 (490)
.+|.+.+.
T Consensus 75 ~~g~v~~~ 82 (116)
T cd02790 75 PEGVVFMP 82 (116)
T ss_pred CCCEEEEe
Confidence 77766553
No 207
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.63 E-value=2e+02 Score=25.62 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=41.6
Q ss_pred HHHHHHHc--CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc-cceeeechh
Q 011237 416 AILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS-LESFNSSLV 478 (490)
Q Consensus 416 ~il~~l~~--g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~-~~~~~~~~~ 478 (490)
.|++.+.+ ++.|+++|...+-.+.|.. ...+|.--|+.|++.|.|.+-.. +++..|...
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~i----slaTVYr~L~~l~e~Glv~~~~~~~~~~~y~~~ 86 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGI----SLATVYRTLKLLEEAGLVHRLEFEGGKTRYELN 86 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCC----CHhHHHHHHHHHHHCCCEEEEEeCCCEEEEecC
Confidence 56777654 3469999999887654431 24468888999999999997765 446666443
No 208
>PLN02594 phosphatidate cytidylyltransferase
Probab=22.07 E-value=3.9e+02 Score=27.60 Aligned_cols=87 Identities=9% Similarity=0.023 Sum_probs=43.1
Q ss_pred CHHHHHHHH-HHHHcC-CCCEEEcCCCCCCCChHHHH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhcCCCccchH
Q 011237 369 NMTDYFQST-YKFLEL-SPHALIPMHGRVNLWPKHML-CGYLKNRRAREAAILQAIENGVETLFDIVANVYSEVPRSFWI 445 (490)
Q Consensus 369 ~~~~~~~SL-~~L~~l-~~~~ilPgHG~~~~~~~~~i-~~~l~~~~~r~~~il~~l~~g~~T~~ei~~~~~~~l~~~~~~ 445 (490)
...+..+|. +|-... |...++||||++.+.-...+ ..-.... -+...++....+...+.+.+...++..+..
T Consensus 250 ~fGdlfaS~~KR~~~IKDfG~~IPGHGGilDRfDs~l~~~~f~y~-----y~~~fi~~~~~~~~~il~~i~~~l~~~~q~ 324 (342)
T PLN02594 250 PFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYI-----YYQSFIVPQSVSVGKLLDQILTLLTDEEQK 324 (342)
T ss_pred HhhhHHHHHHHHccCCCcccCccCCCccccccccHHHHHHHHHHH-----HHHHHhcCCCCCHHHHHHHHHHcCCHHHHH
Confidence 334444443 333333 33469999999875332211 1111110 111223333458888998888777755443
Q ss_pred HHHHHHHHHHHHHHHCCc
Q 011237 446 PAASNVRLHVDHLADQNK 463 (490)
Q Consensus 446 ~a~~~v~ahL~~L~~~g~ 463 (490)
.... .--++|.++|.
T Consensus 325 ~l~~---~l~~~l~~~g~ 339 (342)
T PLN02594 325 ELYV---KLGQMLQERGL 339 (342)
T ss_pred HHHH---HHHHHHHHcCC
Confidence 3222 22344555554
No 209
>PF10074 DUF2285: Uncharacterized conserved protein (DUF2285); InterPro: IPR018754 This entry contains uncharacterised proteins of unknown function.
Probab=22.03 E-value=2.4e+02 Score=23.87 Aligned_cols=88 Identities=18% Similarity=0.255 Sum_probs=47.5
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhcC--CCcc
Q 011237 365 TAGGNMTDYFQSTYKFLELSPHALIPMHGRVNLWPKHMLCGYLKNRRAREAAILQAIENGVETLFDIVANVYSE--VPRS 442 (490)
Q Consensus 365 ~~~~~~~~~~~SL~~L~~l~~~~ilPgHG~~~~~~~~~i~~~l~~~~~r~~~il~~l~~g~~T~~ei~~~~~~~--l~~~ 442 (490)
|.+.+...=++++.++...- -|+..+-. +. .+..|-..+....-+++++..+|. |..||+..+|.. +...
T Consensus 4 P~D~~~~~Rl~a~~rl~~~l-----~g~~~~p~-~~-~lt~~~~~rl~~~LralDa~~~Ga-s~ReIA~~lfg~~~~~~~ 75 (106)
T PF10074_consen 4 PLDADLEDRLEAARRLWRAL-----AGRPPPPD-PR-ALTPYQRRRLRLMLRALDARLAGA-SYREIAEALFGEDRVSAD 75 (106)
T ss_pred ecCCChHHHHHHHHHHHHHh-----cCCCCCCC-CC-CCCHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHcCcCccccc
Confidence 45567777777877765431 12222111 00 023344444444456677766665 999999999986 3333
Q ss_pred chHHHHHHHHHHHHHHHHCC
Q 011237 443 FWIPAASNVRLHVDHLADQN 462 (490)
Q Consensus 443 ~~~~a~~~v~ahL~~L~~~g 462 (490)
.|.- +.....+..|.++|
T Consensus 76 ~W~~--~~~R~~~~rll~~a 93 (106)
T PF10074_consen 76 EWKD--SSLRRRVRRLLRRA 93 (106)
T ss_pred cccC--hHHHHHHHHHHHHH
Confidence 3322 34555555555444
No 210
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=21.21 E-value=1.8e+02 Score=21.37 Aligned_cols=36 Identities=11% Similarity=0.001 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccc
Q 011237 424 GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 468 (490)
Q Consensus 424 g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 468 (490)
++.|..||++.+- ....++..++..|+++|.|....
T Consensus 24 ~~~s~~ela~~~g---------~s~~tv~r~l~~L~~~g~i~~~~ 59 (67)
T cd00092 24 LPLTRQEIADYLG---------LTRETVSRTLKELEEEGLISRRG 59 (67)
T ss_pred CCcCHHHHHHHHC---------CCHHHHHHHHHHHHHCCCEEecC
Confidence 4568888887763 23456888999999999998765
No 211
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=20.93 E-value=1.4e+02 Score=29.50 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHc-CC-CCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeech
Q 011237 412 AREAAILQAIEN-GV-ETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSL 477 (490)
Q Consensus 412 ~r~~~il~~l~~-g~-~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~ 477 (490)
+-++.+++++.+ |+ .+-.||.+++ .++ ..++.-+|..|+++|.|++....+......
T Consensus 195 ~~e~~il~~i~~~GGri~Q~eL~r~l--gls-------ktTvsR~L~~LEk~GlIe~~K~G~~n~V~l 253 (258)
T COG2512 195 EDEKEILDLIRERGGRITQAELRRAL--GLS-------KTTVSRILRRLEKRGLIEKEKKGRTNIVEL 253 (258)
T ss_pred HHHHHHHHHHHHhCCEEeHHHHHHhh--CCC-------hHHHHHHHHHHHhCCceEEEEeCCeeEEEE
Confidence 334567777654 43 4778888776 222 456777899999999999988877665543
No 212
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=20.87 E-value=2.5e+02 Score=23.04 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=33.1
Q ss_pred HHHHHHHHHc-----CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 414 EAAILQAIEN-----GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 414 ~~~il~~l~~-----g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
.++|++.+++ .+.++.+|++++ .++ ..+++..|++|..+|.|=..+.
T Consensus 49 ~~~Vl~~i~~~~~~~~Gv~v~~I~~~l--~~~-------~~~v~~al~~L~~eG~IYsTiD 100 (102)
T PF08784_consen 49 QDKVLNFIKQQPNSEEGVHVDEIAQQL--GMS-------ENEVRKALDFLSNEGHIYSTID 100 (102)
T ss_dssp HHHHHHHHHC----TTTEEHHHHHHHS--TS--------HHHHHHHHHHHHHTTSEEESSS
T ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHh--CcC-------HHHHHHHHHHHHhCCeEecccC
Confidence 3456666654 235899999987 443 4578999999999999854443
No 213
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=20.56 E-value=1.6e+02 Score=29.71 Aligned_cols=107 Identities=20% Similarity=0.311 Sum_probs=68.5
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCcccccccc-CcCCCCcccc--cccc-ccccccchhhhH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQ-GEKSEPTISI--QGSE-KINLGKFDIESA 81 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~--~~~~-~~~~~~~~~~~~ 81 (490)
++.|+-|-+.. |..|+||-+||-|.-+ -+|.--- -..++.... .++ +|.|.+ +--+ ++|=-.=+.+.+
T Consensus 232 vt~iL~n~srk-~LVlvqqfRpaVy~G~--~~~~~~g----~~~~vDe~~~~e~-~PaigvTlELcag~Vd~p~s~~e~a 303 (405)
T KOG4432|consen 232 VTCILVNMSRK-ELVLVQQFRPAVYVGK--NRFLKEG----IGKPVDEIDFSES-DPAIGVTLELCAGRVDDPFSDPEKA 303 (405)
T ss_pred eEEEEEeccch-heehhhhcCcceeecc--eeecccC----CCCcccccccccC-CccceeeeeeecccCCCCcccHHHH
Confidence 45677787755 9999999999987555 2331000 001111111 223 554422 2111 233223345678
Q ss_pred HHHHHHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEE
Q 011237 82 LNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIM 122 (490)
Q Consensus 82 ~~~~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~ 122 (490)
-.+..++.|..|..+.+..-|++++-- |..--=-|-||+
T Consensus 304 ~~e~veecGYdlp~~~~k~va~y~sGV--G~SG~~QTmfy~ 342 (405)
T KOG4432|consen 304 ARESVEECGYDLPEDSFKLVAKYISGV--GQSGDTQTMFYV 342 (405)
T ss_pred HHHHHHHhCCCCCHHHHhhhheeeccc--CCcCCeeEEEEE
Confidence 899999999999999999999999988 776566788997
No 214
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=20.39 E-value=2.4e+02 Score=26.40 Aligned_cols=44 Identities=25% Similarity=0.387 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccc
Q 011237 415 AAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPK 466 (490)
Q Consensus 415 ~~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~ 466 (490)
.+++..++ |..|++||++.+-.+++ ...+..-|+.|.++|.|..
T Consensus 33 ~~L~~lLd-G~rt~~eI~~~l~~~~p-------~~~v~~~L~~L~~~G~l~~ 76 (193)
T TIGR03882 33 CQLAPLLD-GRRTLDEIIAALAGRFP-------AEEVLYALDRLERRGYLVE 76 (193)
T ss_pred HHHHHHHc-CCCCHHHHHHHhhccCC-------HHHHHHHHHHHHHCCCEec
Confidence 35777774 67799999999877655 2236677999999999975
No 215
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=20.35 E-value=1.8e+02 Score=20.93 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=30.8
Q ss_pred cCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccc
Q 011237 423 NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLE 471 (490)
Q Consensus 423 ~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~ 471 (490)
.++.+..+|...+. ....++-..++.|+++|.|.+.....
T Consensus 15 ~~~~~~~~la~~~~---------~~~~~~t~~i~~L~~~g~I~r~~~~~ 54 (59)
T PF01047_consen 15 NGGITQSELAEKLG---------ISRSTVTRIIKRLEKKGLIERERDPD 54 (59)
T ss_dssp HSSEEHHHHHHHHT---------S-HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred cCCCCHHHHHHHHC---------CChhHHHHHHHHHHHCCCEEeccCCC
Confidence 46679999998874 23556788899999999999876553
No 216
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=20.06 E-value=3.8e+02 Score=19.97 Aligned_cols=49 Identities=18% Similarity=0.088 Sum_probs=33.4
Q ss_pred HHHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccc
Q 011237 414 EAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLE 471 (490)
Q Consensus 414 ~~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~ 471 (490)
++.|..+.++ +..+..+|++.+- ....++-..+.+|.++|.|..+...+
T Consensus 10 L~~Iy~l~~~~~~v~~~~iA~~L~---------vs~~tvt~ml~~L~~~GlV~~~~y~g 59 (60)
T PF01325_consen 10 LKAIYELSEEGGPVRTKDIAERLG---------VSPPTVTEMLKRLAEKGLVEYEPYKG 59 (60)
T ss_dssp HHHHHHHHHCTSSBBHHHHHHHHT---------S-HHHHHHHHHHHHHTTSEEEETTTE
T ss_pred HHHHHHHHcCCCCccHHHHHHHHC---------CChHHHHHHHHHHHHCCCEEecCCCC
Confidence 3345555444 4558899998873 23456788899999999998775443
Done!