Query 011237
Match_columns 490
No_of_seqs 466 out of 3001
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 03:59:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zo4_A Metallo-beta-lactamase 100.0 9E-40 3.1E-44 329.0 29.6 267 185-477 2-316 (317)
2 4ad9_A Lactb2, beta-lactamase- 100.0 5.1E-38 1.7E-42 312.7 32.1 271 181-475 6-287 (289)
3 2vw8_A PA1000, PQSE; quinolone 100.0 1.1E-30 3.8E-35 261.4 22.9 252 182-462 7-298 (303)
4 1m2x_A Class B carbapenemase B 100.0 4.5E-29 1.5E-33 238.6 19.9 193 183-396 3-200 (223)
5 3l6n_A Metallo-beta-lactamase; 100.0 2E-28 6.8E-33 233.0 20.1 197 180-397 3-205 (219)
6 4eyb_A Beta-lactamase NDM-1; m 100.0 4.2E-29 1.5E-33 246.5 14.9 194 181-397 48-255 (270)
7 3hnn_A Putative diflavin flavo 100.0 2.7E-28 9.2E-33 239.5 20.0 221 176-409 3-249 (262)
8 1a7t_A Metallo-beta-lactamase; 100.0 2.1E-28 7.2E-33 235.5 18.8 197 180-397 9-211 (232)
9 1k07_A FEZ-1 beta-lactamase; m 100.0 1E-27 3.4E-32 235.0 19.8 217 179-424 5-260 (263)
10 2fhx_A SPM-1; metallo-beta-lac 100.0 2E-27 6.8E-32 230.0 21.0 191 179-397 7-226 (246)
11 1mqo_A Beta-lactamase II; alph 100.0 1.4E-27 4.6E-32 228.9 18.8 198 180-398 14-216 (227)
12 2y8b_A Metallo-B-lactamase; hy 100.0 1.1E-27 3.7E-32 235.6 17.9 195 180-397 41-244 (265)
13 2cfu_A SDSA1; SDS-hydrolase, l 100.0 1.1E-27 3.8E-32 263.6 19.8 274 120-435 55-389 (658)
14 3iog_A Beta-lactamase; hydrola 100.0 1.9E-27 6.6E-32 227.0 18.9 186 182-399 3-211 (227)
15 3q6v_A Beta-lactamase; metallo 99.9 3.6E-27 1.2E-31 226.0 18.0 187 181-399 5-218 (233)
16 4hl2_A Beta-lactamase NDM-1; s 99.9 2.3E-27 8E-32 229.6 15.1 195 181-397 21-228 (243)
17 1jjt_A IMP-1 metallo beta-lact 99.9 4.7E-27 1.6E-31 225.6 16.8 194 180-398 5-203 (228)
18 2yhe_A SEC-alkyl sulfatase; hy 99.9 5.2E-29 1.8E-33 273.3 0.0 280 119-442 65-406 (668)
19 3m8t_A 'BLR6230 protein; subcl 99.9 8.6E-26 3E-30 224.1 20.1 190 181-399 37-249 (294)
20 1xm8_A Glyoxalase II; structur 99.9 4.5E-26 1.6E-30 223.0 16.0 151 231-398 24-175 (254)
21 2qed_A Hydroxyacylglutathione 99.9 5.6E-26 1.9E-30 222.9 16.2 185 222-426 18-208 (258)
22 4dik_A Flavoprotein; TM0755, e 99.9 5.3E-25 1.8E-29 229.3 21.1 224 169-408 4-257 (410)
23 2p18_A Glyoxalase II; metallop 99.9 2.2E-25 7.6E-30 224.4 17.7 182 230-426 51-267 (311)
24 2ohh_A Type A flavoprotein FPR 99.9 5.8E-25 2E-29 228.2 19.7 214 182-409 3-250 (404)
25 4ax1_B Metallo-beta-lactamase 99.9 1.8E-24 6.1E-29 215.1 21.8 212 182-422 41-293 (303)
26 1qh5_A Glyoxalase II, protein 99.9 4.2E-25 1.4E-29 216.9 15.7 154 223-396 12-177 (260)
27 2p97_A Hypothetical protein; p 99.9 1.3E-24 4.5E-29 204.7 18.3 191 184-409 2-199 (201)
28 1ycg_A Nitric oxide reductase; 99.9 1.7E-24 5.7E-29 224.3 20.8 215 184-411 3-247 (398)
29 2q9u_A A-type flavoprotein; fl 99.9 2.2E-24 7.4E-29 224.9 19.7 215 182-410 8-250 (414)
30 2xf4_A Hydroxyacylglutathione 99.9 1.9E-24 6.4E-29 204.3 15.6 159 230-398 24-198 (210)
31 1e5d_A Rubredoxin\:oxygen oxid 99.9 6.8E-24 2.3E-28 219.9 20.6 213 183-408 2-245 (402)
32 2gcu_A Putative hydroxyacylglu 99.9 6.1E-24 2.1E-28 206.8 18.2 158 222-395 14-186 (245)
33 2zwr_A Metallo-beta-lactamase 99.9 4.6E-24 1.6E-28 201.6 15.5 161 223-397 13-189 (207)
34 4efz_A Metallo-beta-lactamase 99.9 1.1E-23 3.6E-28 210.7 18.6 168 221-395 15-219 (298)
35 1sml_A Protein (penicillinase) 99.9 9.2E-24 3.2E-28 207.4 16.4 186 182-396 21-229 (269)
36 3r2u_A Metallo-beta-lactamase 99.9 1.1E-22 3.7E-27 215.7 20.2 165 221-394 35-221 (466)
37 3adr_A Putative uncharacterize 99.9 1.1E-22 3.7E-27 198.3 16.9 186 230-434 29-245 (261)
38 3tp9_A Beta-lactamase and rhod 99.9 1.8E-22 6.2E-27 214.4 13.9 164 222-394 15-201 (474)
39 3dha_A N-acyl homoserine lacto 99.9 5.5E-22 1.9E-26 192.8 9.7 162 223-395 39-242 (254)
40 3aj3_A MLR6805 protein, 4-pyri 99.8 4.4E-21 1.5E-25 188.5 9.5 161 223-395 35-255 (274)
41 3esh_A Protein similar to meta 99.8 1E-20 3.4E-25 187.0 8.9 166 223-396 48-255 (280)
42 1ztc_A Hypothetical protein TM 99.8 3.9E-21 1.3E-25 183.6 5.5 155 223-397 35-216 (221)
43 2r2d_A AGR_PTI_140P, Zn-depend 99.8 3.9E-20 1.3E-24 181.8 11.9 156 230-395 52-262 (276)
44 1p9e_A Methyl parathion hydrol 99.8 1.2E-20 4.2E-25 191.3 7.6 166 222-395 96-305 (331)
45 1zkp_A Hypothetical protein BA 99.6 6.1E-15 2.1E-19 144.3 13.3 168 222-398 42-241 (268)
46 3zq4_A Ribonuclease J 1, RNAse 99.5 2.2E-14 7.5E-19 154.9 12.1 131 221-357 20-169 (555)
47 3qsj_A Nudix hydrolase; struct 99.5 1.3E-14 4.4E-19 139.5 6.7 83 78-165 116-203 (232)
48 3bk2_A RNAse J, metal dependen 99.5 1.7E-13 5.7E-18 148.4 12.7 131 222-357 29-184 (562)
49 3iek_A Ribonuclease TTHA0252; 99.4 4.9E-13 1.7E-17 140.1 13.6 166 222-393 13-224 (431)
50 2ycb_A Beta-CAsp RNAse, cleava 99.4 9.9E-13 3.4E-17 144.3 16.2 166 222-393 192-417 (636)
51 2xr1_A Cleavage and polyadenyl 99.4 3.7E-13 1.3E-17 147.8 10.4 165 223-393 197-420 (640)
52 3md7_A Beta-lactamase-like; ss 99.4 1.5E-12 5E-17 129.4 11.4 163 224-397 64-267 (293)
53 3g1p_A Protein PHNP; C-P lyase 99.4 7.8E-13 2.7E-17 128.8 8.4 120 223-355 39-167 (258)
54 2e7y_A TRNAse Z; tRNA maturati 99.4 7.3E-13 2.5E-17 129.7 7.2 111 221-343 10-146 (280)
55 2i7x_A Protein CFT2; polyadeny 99.3 1.8E-11 6.1E-16 135.7 18.2 129 220-354 12-181 (717)
56 3af5_A Putative uncharacterize 99.3 2.9E-12 1E-16 140.9 11.3 126 223-354 202-369 (651)
57 3kl7_A Putative metal-dependen 99.3 4.8E-12 1.7E-16 121.8 11.4 154 223-395 37-212 (235)
58 2az4_A Hypothetical protein EF 99.3 5.4E-12 1.8E-16 131.9 9.3 92 255-355 83-192 (429)
59 2wyl_A L-ascorbate-6-phosphate 99.3 1.4E-11 4.7E-16 126.1 10.3 139 255-396 108-285 (360)
60 2i7t_A Cleavage and polyadenyl 99.2 3E-12 1E-16 135.1 5.0 128 222-355 24-182 (459)
61 2cbn_A Ribonuclease Z; phospho 99.2 4.1E-11 1.4E-15 119.0 12.2 106 230-343 33-152 (306)
62 1y44_A Ribonuclease Z; zinc-de 99.2 3.4E-11 1.1E-15 120.6 10.2 113 223-343 19-150 (320)
63 3bv6_A Metal-dependent hydrola 99.2 3E-11 1E-15 124.5 9.3 140 254-396 131-310 (379)
64 2p4z_A Metal-dependent hydrola 99.1 2E-10 6.8E-15 113.6 11.6 170 219-395 29-258 (284)
65 3rpc_A Possible metal-dependen 99.1 8.1E-10 2.8E-14 107.8 13.4 131 256-396 64-230 (264)
66 2bib_A CBPE, teichoic acid pho 99.1 6.8E-10 2.3E-14 119.6 13.5 127 223-354 18-205 (547)
67 4b87_A DNA cross-LINK repair 1 99.0 7.2E-10 2.5E-14 113.6 9.4 107 229-356 35-146 (367)
68 3jxp_A Coenzyme PQQ synthesis 99.0 1E-09 3.5E-14 110.5 9.3 124 223-354 41-203 (321)
69 3zwf_A Zinc phosphodiesterase 99.0 1.6E-09 5.6E-14 111.0 10.4 73 222-301 18-102 (368)
70 3zdk_A 5' exonuclease apollo; 98.8 4.1E-09 1.4E-13 106.6 8.0 108 227-355 6-124 (336)
71 3h3e_A Uncharacterized protein 98.8 2.6E-08 8.8E-13 97.5 11.6 68 218-298 27-94 (267)
72 1vjn_A Zn-dependent hydrolase 98.7 2.8E-08 9.7E-13 94.4 6.9 134 223-396 20-177 (220)
73 3u53_A BIS(5'-nucleosyl)-tetra 97.1 0.0011 3.9E-08 58.3 7.3 100 15-149 22-127 (155)
74 3i7u_A AP4A hydrolase; nudix p 96.8 0.00084 2.9E-08 58.0 3.8 96 16-148 14-113 (134)
75 1sjy_A MUTT/nudix family prote 96.7 0.0061 2.1E-07 53.3 9.0 113 7-152 17-135 (159)
76 3gwy_A Putative CTP pyrophosph 96.6 0.004 1.4E-07 53.6 6.7 105 6-146 9-115 (140)
77 3q91_A Uridine diphosphate glu 96.5 0.0011 3.9E-08 62.4 2.8 125 6-153 39-194 (218)
78 1ktg_A Diadenosine tetraphosph 96.5 0.0039 1.3E-07 53.2 5.9 109 5-148 5-119 (138)
79 3grn_A MUTT related protein; s 96.3 0.014 4.9E-07 50.8 8.9 105 6-146 11-118 (153)
80 1v8y_A ADP-ribose pyrophosphat 96.2 0.01 3.5E-07 52.9 7.6 107 7-152 38-149 (170)
81 2pbt_A AP4A hydrolase; nudix p 96.2 0.0035 1.2E-07 53.2 4.1 102 6-147 7-112 (134)
82 3son_A Hypothetical nudix hydr 96.1 0.015 5.3E-07 50.3 7.7 95 16-148 19-125 (149)
83 3shd_A Phosphatase NUDJ; nudix 96.0 0.0098 3.3E-07 51.7 6.3 93 16-144 15-112 (153)
84 1vcd_A NDX1; nudix protein, di 96.0 0.014 4.7E-07 48.9 7.0 100 6-147 5-107 (126)
85 3eds_A MUTT/nudix family prote 95.9 0.006 2E-07 53.5 4.3 101 7-146 25-134 (153)
86 3o6z_A GDP-mannose pyrophospha 95.8 0.0069 2.3E-07 55.5 4.5 115 7-152 49-171 (191)
87 3exq_A Nudix family hydrolase; 95.6 0.029 9.8E-07 49.5 7.6 103 7-144 14-118 (161)
88 1q27_A Putative nudix hydrolas 95.5 0.064 2.2E-06 47.5 9.6 112 7-153 38-154 (171)
89 2w4e_A MUTT/nudix family prote 95.5 0.02 6.9E-07 49.5 6.1 102 16-152 16-122 (145)
90 2o1c_A DATP pyrophosphohydrola 95.3 0.028 9.4E-07 48.3 6.1 107 6-147 12-132 (150)
91 2azw_A MUTT/nudix family prote 95.2 0.021 7E-07 49.1 5.2 104 8-148 23-131 (148)
92 1rya_A GDP-mannose mannosyl hy 95.2 0.05 1.7E-06 47.4 7.7 108 6-146 21-137 (160)
93 1f3y_A Diadenosine 5',5'''-P1, 95.2 0.016 5.3E-07 50.8 4.3 99 16-150 25-148 (165)
94 4dyw_A MUTT/nudix family prote 95.1 0.017 5.7E-07 50.8 4.4 102 6-144 32-138 (157)
95 1g0s_A Hypothetical 23.7 kDa p 94.8 0.033 1.1E-06 51.7 5.8 114 8-152 62-184 (209)
96 3q93_A 7,8-dihydro-8-oxoguanin 94.8 0.023 7.9E-07 51.1 4.4 96 16-145 35-132 (176)
97 2rrk_A ORF135, CTP pyrophospho 94.8 0.045 1.5E-06 46.4 6.1 96 16-146 19-116 (140)
98 2b0v_A Nudix hydrolase; struct 94.7 0.037 1.3E-06 47.8 5.5 98 16-147 18-120 (153)
99 3id9_A MUTT/nudix family prote 94.7 0.027 9.1E-07 50.0 4.7 101 5-146 25-134 (171)
100 2yvp_A NDX2, MUTT/nudix family 94.5 0.034 1.2E-06 50.0 4.9 102 16-152 52-159 (182)
101 3h95_A Nucleoside diphosphate- 94.5 0.06 2E-06 49.3 6.7 104 8-147 31-140 (199)
102 3ees_A Probable pyrophosphohyd 94.4 0.054 1.8E-06 46.6 5.8 96 16-146 32-129 (153)
103 2dsc_A ADP-sugar pyrophosphata 94.3 0.037 1.3E-06 51.4 4.8 107 10-151 70-187 (212)
104 2jvb_A Protein PSU1, mRNA-deca 94.2 0.048 1.6E-06 46.8 5.0 106 7-152 8-119 (146)
105 3fk9_A Mutator MUTT protein; s 94.1 0.022 7.6E-07 51.9 2.7 93 16-144 14-111 (188)
106 3r03_A Nudix hydrolase; struct 94.0 0.088 3E-06 44.9 6.3 105 7-146 12-118 (144)
107 2pqv_A MUTT/nudix family prote 93.9 0.031 1.1E-06 48.6 3.2 100 6-146 22-128 (154)
108 2yyh_A MUTT domain, 8-OXO-DGTP 93.8 0.062 2.1E-06 45.7 4.9 103 6-145 12-119 (139)
109 3cng_A Nudix hydrolase; struct 93.8 0.049 1.7E-06 49.5 4.4 99 6-145 43-144 (189)
110 2a6t_A SPAC19A8.12; alpha/beta 93.5 0.048 1.7E-06 52.9 4.1 103 6-148 104-213 (271)
111 1vhz_A ADP compounds hydrolase 93.5 0.037 1.3E-06 50.9 3.1 100 18-152 61-165 (198)
112 3hhj_A Mutator MUTT protein; n 93.4 0.17 6E-06 43.9 7.2 104 7-145 33-138 (158)
113 3fcm_A Hydrolase, nudix family 93.3 0.082 2.8E-06 48.3 5.1 105 7-149 49-169 (197)
114 3f6a_A Hydrolase, nudix family 93.3 0.076 2.6E-06 46.4 4.6 102 7-145 10-131 (159)
115 1nqz_A COA pyrophosphatase (MU 93.3 0.11 3.7E-06 47.1 5.8 100 12-146 43-150 (194)
116 1mut_A MUTT, nucleoside tripho 93.2 0.055 1.9E-06 45.1 3.5 94 16-144 15-110 (129)
117 2fml_A MUTT/nudix family prote 93.2 0.055 1.9E-06 52.5 3.9 99 16-146 55-156 (273)
118 1hzt_A Isopentenyl diphosphate 93.1 0.15 5.1E-06 46.1 6.4 115 7-152 36-155 (190)
119 2fvv_A Diphosphoinositol polyp 92.9 0.19 6.4E-06 46.0 6.8 96 16-151 53-154 (194)
120 3fjy_A Probable MUTT1 protein; 92.8 0.1 3.4E-06 52.7 5.2 100 15-149 36-160 (364)
121 3i9x_A MUTT/nudix family prote 92.6 0.15 5.3E-06 45.9 5.7 104 16-146 45-154 (187)
122 1mk1_A ADPR pyrophosphatase; n 92.6 0.17 5.9E-06 46.6 6.2 103 16-152 54-163 (207)
123 1x51_A A/G-specific adenine DN 92.5 0.32 1.1E-05 42.1 7.5 106 7-146 23-132 (155)
124 3gg6_A Nudix motif 18, nucleos 92.3 0.12 4.1E-06 44.8 4.6 99 6-145 23-128 (156)
125 3q1p_A Phosphohydrolase (MUTT/ 92.1 0.083 2.8E-06 48.7 3.4 95 16-144 78-175 (205)
126 3gz5_A MUTT/nudix family prote 91.5 0.21 7E-06 47.4 5.5 97 16-144 36-136 (240)
127 2kdv_A RNA pyrophosphohydrolas 91.2 0.15 5.1E-06 45.1 3.9 106 8-149 13-137 (164)
128 3oga_A Nucleoside triphosphata 91.2 0.25 8.5E-06 43.2 5.3 100 16-146 38-148 (165)
129 3o8s_A Nudix hydrolase, ADP-ri 91.0 0.11 3.8E-06 47.9 2.9 94 16-144 80-176 (206)
130 1k2e_A Nudix homolog; nudix/MU 90.7 0.2 6.9E-06 43.6 4.2 96 7-145 5-117 (156)
131 2qjo_A Bifunctional NMN adenyl 90.5 0.34 1.1E-05 47.9 6.1 100 16-147 213-322 (341)
132 2qjt_B Nicotinamide-nucleotide 90.3 0.41 1.4E-05 47.6 6.6 99 16-146 218-328 (352)
133 2fb1_A Conserved hypothetical 89.4 0.32 1.1E-05 45.6 4.7 94 16-144 27-125 (226)
134 2fkb_A Putative nudix hydrolas 87.1 1.9 6.4E-05 38.0 8.1 107 7-149 41-151 (180)
135 1vk6_A NADH pyrophosphatase; 1 86.1 0.48 1.6E-05 45.8 3.7 90 16-144 150-243 (269)
136 2jt1_A PEFI protein; solution 83.1 1.1 3.9E-05 34.6 3.9 38 424-470 23-60 (77)
137 3e57_A Uncharacterized protein 82.5 0.79 2.7E-05 42.6 3.4 112 16-151 78-192 (211)
138 2b06_A MUTT/nudix family prote 82.2 0.85 2.9E-05 39.1 3.3 79 44-146 38-118 (155)
139 3fsp_A A/G-specific adenine gl 81.5 1.4 4.7E-05 44.4 5.0 99 6-144 243-342 (369)
140 3jth_A Transcription activator 80.1 2 7E-05 34.0 4.7 53 416-477 27-79 (98)
141 1q33_A Pyrophosphatase, ADP-ri 79.9 1.1 3.6E-05 43.8 3.4 96 16-145 138-260 (292)
142 2fu4_A Ferric uptake regulatio 79.7 2.1 7.1E-05 32.9 4.5 58 415-476 20-81 (83)
143 3f13_A Putative nudix hydrolas 79.4 3.8 0.00013 35.9 6.6 80 16-140 26-108 (163)
144 3pqk_A Biofilm growth-associat 78.5 4.1 0.00014 32.5 6.1 54 416-478 27-80 (102)
145 1p6r_A Penicillinase repressor 77.7 3.4 0.00011 31.6 5.1 57 416-477 13-70 (82)
146 2vxz_A Pyrsv_GP04; viral prote 74.8 2.4 8.2E-05 36.8 3.7 57 409-475 8-64 (165)
147 2heo_A Z-DNA binding protein 1 73.6 4.1 0.00014 30.2 4.4 50 415-474 13-64 (67)
148 1oyi_A Double-stranded RNA-bin 72.6 3.1 0.0001 32.6 3.6 50 412-470 17-66 (82)
149 2xsq_A U8 snoRNA-decapping enz 72.5 1.9 6.5E-05 40.0 2.8 67 41-129 74-141 (217)
150 1r1u_A CZRA, repressor protein 72.4 4.6 0.00016 32.5 4.8 52 416-476 30-81 (106)
151 1xmk_A Double-stranded RNA-spe 72.3 5.7 0.0002 30.7 5.1 46 413-467 12-59 (79)
152 2k4b_A Transcriptional regulat 70.8 3.2 0.00011 33.6 3.4 56 417-477 40-96 (99)
153 2oqg_A Possible transcriptiona 70.4 5.9 0.0002 31.9 5.2 52 416-476 25-76 (114)
154 2kko_A Possible transcriptiona 70.4 3 0.0001 33.9 3.3 53 416-477 29-81 (108)
155 3f6o_A Probable transcriptiona 70.0 2.8 9.7E-05 34.6 3.1 54 416-478 22-75 (118)
156 1u20_A U8 snoRNA-binding prote 66.1 5.2 0.00018 36.6 4.4 90 16-144 55-162 (212)
157 2jsc_A Transcriptional regulat 66.1 3.9 0.00013 33.7 3.2 54 416-478 25-78 (118)
158 1r1t_A Transcriptional repress 65.7 7.2 0.00024 32.4 4.8 53 416-477 50-102 (122)
159 1qbj_A Protein (double-strande 64.8 13 0.00045 28.7 5.8 55 412-475 10-69 (81)
160 3f6v_A Possible transcriptiona 63.6 3.6 0.00012 35.9 2.5 54 416-478 62-115 (151)
161 1xn7_A Hypothetical protein YH 63.1 6.2 0.00021 30.4 3.5 46 414-468 4-50 (78)
162 3cuo_A Uncharacterized HTH-typ 62.3 8.7 0.0003 29.9 4.5 54 415-477 27-81 (99)
163 1y0u_A Arsenical resistance op 61.5 14 0.00047 28.9 5.5 43 416-468 35-77 (96)
164 1qgp_A Protein (double strande 61.3 9.2 0.00031 29.2 4.2 46 414-468 16-65 (77)
165 1u2w_A CADC repressor, cadmium 60.0 7.2 0.00025 32.3 3.7 52 416-476 46-98 (122)
166 2k02_A Ferrous iron transport 59.7 5.7 0.00019 31.4 2.8 45 415-468 5-50 (87)
167 3g2b_A Coenzyme PQQ synthesis 57.1 15 0.0005 29.3 4.9 48 416-465 47-94 (95)
168 3hhh_A Transcriptional regulat 54.1 11 0.00036 31.2 3.7 51 416-469 17-67 (116)
169 2p4w_A Transcriptional regulat 53.8 9.9 0.00034 34.7 3.9 45 416-469 19-63 (202)
170 1mzb_A Ferric uptake regulatio 52.1 14 0.00047 31.2 4.2 57 416-476 22-82 (136)
171 4esb_A Transcriptional regulat 52.0 9.4 0.00032 31.5 3.1 51 416-469 13-63 (115)
172 2htj_A P fimbrial regulatory p 50.8 17 0.00058 27.5 4.2 43 416-467 4-47 (81)
173 2dk8_A DNA-directed RNA polyme 50.0 23 0.00077 27.5 4.7 66 412-485 14-81 (81)
174 1yg2_A Gene activator APHA; vi 49.9 11 0.00036 33.5 3.3 53 416-469 6-58 (179)
175 2lkp_A Transcriptional regulat 49.8 17 0.00059 29.4 4.4 53 416-477 36-88 (119)
176 3df8_A Possible HXLR family tr 49.6 15 0.00051 29.8 3.9 53 416-477 31-85 (111)
177 2o03_A Probable zinc uptake re 49.0 25 0.00086 29.3 5.4 58 416-477 15-75 (131)
178 2hzt_A Putative HTH-type trans 47.9 21 0.0007 28.6 4.5 46 416-469 18-63 (107)
179 3b73_A PHIH1 repressor-like pr 47.7 22 0.00076 29.1 4.7 46 415-467 16-62 (111)
180 3f8b_A Transcriptional regulat 47.5 13 0.00044 30.6 3.2 53 416-469 16-68 (116)
181 4esf_A PADR-like transcription 46.2 14 0.00048 30.5 3.3 51 416-469 15-65 (117)
182 2fe3_A Peroxide operon regulat 46.0 28 0.00096 29.6 5.3 57 416-476 26-85 (145)
183 2dql_A PEX protein; circadian 45.0 13 0.00046 30.5 2.9 51 417-469 27-77 (115)
184 2w57_A Ferric uptake regulatio 44.2 19 0.00066 30.9 4.0 57 416-476 21-81 (150)
185 2pny_A Isopentenyl-diphosphate 44.2 53 0.0018 30.7 7.4 71 78-151 124-205 (246)
186 3mwm_A ZUR, putative metal upt 43.8 31 0.0011 29.2 5.2 57 416-476 18-77 (139)
187 3l7w_A Putative uncharacterize 43.6 14 0.00046 29.9 2.7 49 416-469 13-61 (108)
188 2g9w_A Conserved hypothetical 42.0 32 0.0011 28.8 5.0 57 415-476 12-70 (138)
189 2dho_A Isopentenyl-diphosphate 40.7 64 0.0022 29.8 7.3 117 9-151 65-194 (235)
190 1sd4_A Penicillinase repressor 40.4 38 0.0013 27.4 5.2 56 416-476 14-70 (126)
191 1q1h_A TFE, transcription fact 40.2 21 0.00072 28.5 3.4 51 416-475 22-78 (110)
192 1ub9_A Hypothetical protein PH 39.8 22 0.00074 27.4 3.4 44 416-468 20-64 (100)
193 1xma_A Predicted transcription 39.8 11 0.00039 32.4 1.8 53 416-469 45-97 (145)
194 1uly_A Hypothetical protein PH 39.3 31 0.001 31.0 4.7 45 414-467 22-66 (192)
195 2esh_A Conserved hypothetical 38.3 15 0.0005 30.2 2.1 53 416-469 17-70 (118)
196 2xig_A Ferric uptake regulatio 37.5 35 0.0012 29.2 4.6 58 416-477 31-91 (150)
197 3o2p_E Cell division control p 35.9 44 0.0015 26.2 4.4 60 415-475 26-86 (88)
198 2f2e_A PA1607; transcription f 35.5 73 0.0025 26.9 6.3 45 416-469 28-72 (146)
199 2zkz_A Transcriptional repress 34.9 36 0.0012 26.7 3.9 52 416-477 31-83 (99)
200 3elk_A Putative transcriptiona 34.9 19 0.00065 29.6 2.3 51 416-469 18-68 (117)
201 1okr_A MECI, methicillin resis 34.0 51 0.0018 26.4 4.9 54 417-475 15-69 (123)
202 2e1n_A PEX, period extender; c 33.8 19 0.00063 30.8 2.1 51 417-469 39-89 (138)
203 1z7u_A Hypothetical protein EF 32.9 30 0.001 27.9 3.2 47 416-470 26-72 (112)
204 2zfw_A PEX; five alpha-helices 32.3 17 0.00058 31.5 1.6 52 416-469 48-99 (148)
205 1sfx_A Conserved hypothetical 31.1 75 0.0025 24.4 5.3 45 416-469 24-69 (109)
206 3i4p_A Transcriptional regulat 30.6 56 0.0019 28.1 4.8 44 415-467 6-50 (162)
207 2fsw_A PG_0823 protein; alpha- 30.1 33 0.0011 27.3 3.0 47 416-470 29-75 (107)
208 2d1h_A ST1889, 109AA long hypo 29.7 59 0.002 25.1 4.4 45 417-470 27-72 (109)
209 2p5v_A Transcriptional regulat 28.3 71 0.0024 27.3 5.1 43 416-467 14-57 (162)
210 1tbx_A ORF F-93, hypothetical 27.6 1E+02 0.0035 23.6 5.5 55 416-475 12-67 (99)
211 3tgn_A ADC operon repressor AD 27.0 65 0.0022 26.4 4.5 45 416-469 42-86 (146)
212 3k2z_A LEXA repressor; winged 26.9 74 0.0025 28.3 5.1 45 415-468 12-58 (196)
213 2w25_A Probable transcriptiona 26.8 80 0.0027 26.5 5.1 43 416-467 11-54 (150)
214 2cfx_A HTH-type transcriptiona 26.5 80 0.0027 26.4 5.0 43 416-467 9-52 (144)
215 3l9f_A Putative uncharacterize 26.2 14 0.00048 33.8 0.0 63 406-469 30-92 (204)
216 3tdu_C Cullin-1, CUL-1; E2:E3, 25.8 74 0.0025 24.2 4.1 60 415-475 14-75 (77)
217 4a5n_A Uncharacterized HTH-typ 25.7 68 0.0023 26.9 4.3 47 416-470 30-76 (131)
218 2e1c_A Putative HTH-type trans 25.7 82 0.0028 27.5 5.0 44 415-467 30-74 (171)
219 2pn6_A ST1022, 150AA long hypo 25.3 86 0.0029 26.2 5.0 44 415-467 6-50 (150)
220 1on2_A Transcriptional regulat 24.3 1.5E+02 0.0052 24.2 6.4 46 415-469 11-57 (142)
221 1yyv_A Putative transcriptiona 23.6 44 0.0015 27.9 2.7 47 416-470 39-85 (131)
222 3ri2_A Transcriptional regulat 23.3 36 0.0012 28.3 2.0 49 416-469 25-73 (123)
223 2xrn_A HTH-type transcriptiona 22.9 77 0.0026 29.2 4.5 55 412-475 6-62 (241)
224 4g6q_A Putative uncharacterize 22.5 30 0.001 30.7 1.5 46 416-469 27-72 (182)
225 2cyy_A Putative HTH-type trans 22.2 86 0.0029 26.4 4.4 43 416-467 11-54 (151)
226 1r7j_A Conserved hypothetical 22.1 1.2E+02 0.0041 23.7 4.9 47 412-468 8-54 (95)
227 2cg4_A Regulatory protein ASNC 22.0 85 0.0029 26.4 4.3 43 416-467 12-55 (152)
228 1mkm_A ICLR transcriptional re 21.9 1E+02 0.0034 28.5 5.1 54 412-475 8-63 (249)
229 3s6n_M SurviVal motor neuron p 21.6 19 0.00066 23.1 -0.0 6 40-45 5-10 (37)
230 2h09_A Transcriptional regulat 21.4 2E+02 0.0067 23.9 6.6 49 414-471 42-91 (155)
231 2do7_A Cullin-4B, CUL-4B; heli 21.3 1.2E+02 0.0043 24.2 4.8 59 415-476 34-94 (101)
232 4ets_A Ferric uptake regulatio 21.1 64 0.0022 28.0 3.3 56 416-475 37-97 (162)
233 3r0a_A Putative transcriptiona 20.9 1.1E+02 0.0036 25.0 4.5 46 414-468 28-76 (123)
234 2qlz_A Transcription factor PF 20.8 1.2E+02 0.0041 28.0 5.3 40 420-468 173-212 (232)
235 1j5y_A Transcriptional regulat 20.4 1.2E+02 0.0039 26.8 5.0 47 411-466 20-69 (187)
236 1iuy_A Cullin-3 homologue; win 20.1 1.1E+02 0.0039 24.0 4.2 59 416-475 30-90 (92)
No 1
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=9e-40 Score=328.95 Aligned_cols=267 Identities=21% Similarity=0.292 Sum_probs=212.4
Q ss_pred eecCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChH-HHHHHHHHHhCC----CceE
Q 011237 185 QEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEF-HEELLKVVASLP----RKLI 259 (490)
Q Consensus 185 ~eva~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~-~~~L~~~~~~~~----~~~~ 259 (490)
+||+||||++..+.+. +....|+|+|.++ ++.+|||||..... .+.+.+.+++.+ ++++
T Consensus 2 ~~v~~~v~~i~~~~p~--~~~~~n~~li~~~--------------~~~ilID~G~~~~~~~~~l~~~l~~~g~~~~~i~~ 65 (317)
T 2zo4_A 2 KALLPGLYLLPVPIPY--PLKTVNLYLLQGA--------------GEVALVDTALGTRAARGALELHLAELGLCFQDVKT 65 (317)
T ss_dssp -CCBTTEEEEEEECSS--TTCEEEEEEEEET--------------TEEEEECCCCSSHHHHHHHHHHHHHTTCCGGGCCE
T ss_pred eeccCCeEEEEecCCC--CCCcEEEEEEEcC--------------CceEEEECCCCCHHHHHHHHHHHHHcCCChhhcCE
Confidence 6899999999876542 3345677777653 45899999998753 334555555543 4679
Q ss_pred EEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhcc------------------CC-----------------
Q 011237 260 VFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGK------------------DD----------------- 304 (490)
Q Consensus 260 IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~------------------~~----------------- 304 (490)
||+||.|+||+| |+..|++. +++|++++.+...+.. ..
T Consensus 66 Vi~TH~H~DH~g-----g~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 138 (317)
T 2zo4_A 66 ILLTHHHPDHYG-----LSGFFEGL--GARVFLHEEEFARGHRFWREPEAFAEASWRLFLDHGTPEGALQGIRETVEKTR 138 (317)
T ss_dssp EEESCCSHHHHT-----THHHHHHT--TCEEEEEGGGTTTHHHHHHCTTTSHHHHHHHHHHTTCCC-------CHHHHHH
T ss_pred EEEcCCCCcccc-----cHHHHHhC--CCEEEEcHHHHHHHHhhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhccccc
Confidence 999999999999 99999876 8999999876443321 00
Q ss_pred ----CCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCCCEEEEccccCCCCccccccC---CCCCHHHHHHHH
Q 011237 305 ----WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDIT---AGGNMTDYFQST 377 (490)
Q Consensus 305 ----~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~---~~~~~~~~~~SL 377 (490)
.......+.+|+.+.+||.+++++++||||+||+|+++++.++||+||+++...++++... ...++.+|++||
T Consensus 139 ~~~~~~~~~~~~~~g~~l~~gg~~~~~i~tpGHt~g~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~~~~sl 218 (317)
T 2zo4_A 139 ERVHPPQNPLPLRDGEALEVAGKRLRVLWTPGHADGHAAFYLEEEGVLLAGDALLEKVSPNVGLWAYTRENPLKDFLRSL 218 (317)
T ss_dssp TTCCCCSSCEEECTTCEEEETTEEEEEEECCSSSTTCEEEEETTTTEEEEETSCCSSSCCCCCCCTTSCSCHHHHHHHHH
T ss_pred ccCCCCCCceEECCCCEEEeCCceEEEEECCCCCcccEEEEeCCCCEEEECCEecCCCCCCCcccCCCCCchHHHHHHHH
Confidence 0124567899999999999999999999999999999999999999999987655543321 235889999999
Q ss_pred HHHHcCCCCEEEcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhc-CCCccchHHHHHHHHHHHH
Q 011237 378 YKFLELSPHALIPMHGRVNLWPKHMLCGYLKNRRAREAAILQAIENGVETLFDIVANVYS-EVPRSFWIPAASNVRLHVD 456 (490)
Q Consensus 378 ~~L~~l~~~~ilPgHG~~~~~~~~~i~~~l~~~~~r~~~il~~l~~g~~T~~ei~~~~~~-~l~~~~~~~a~~~v~ahL~ 456 (490)
++|+++++++++||||.++.+..+.+.+++++++++++++++++ +++.|++||++.+|+ +++..++.++..++.+||+
T Consensus 219 ~~l~~l~~~~v~pgHg~~~~~~~~~i~~~~~~~~~~~~~i~~~l-~~~~t~~ei~~~~~~~~~~~~~~~~a~~e~~ahL~ 297 (317)
T 2zo4_A 219 DRLADLGARVAYAGHFGPIADVRQRAEELKAHHQARLEALLALL-DGPKTAWELSLHLFPQELDPAGRRFAFAETLAHLE 297 (317)
T ss_dssp HHHHTSCCSEEEESSSSCBSCHHHHHHHHHHHHHHHHHHHHHHC-SSCBCHHHHHHHHCC-------CHHHHHHHHHHHH
T ss_pred HHHhcCCCCEEECCCCCccCCHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHhhcccChhHHHHHHHHHHHHHH
Confidence 99999999999999999998888999999999999999999998 567799999999999 9999999999999999999
Q ss_pred HHHHCCccccccccceeeech
Q 011237 457 HLADQNKLPKGFSLESFNSSL 477 (490)
Q Consensus 457 ~L~~~g~i~~~~~~~~~~~~~ 477 (490)
+|+++|+|. .+++.++|+.
T Consensus 298 ~L~~~g~v~--~~~~~~~~~~ 316 (317)
T 2zo4_A 298 YLREEGAVG--RGGPPYRYFR 316 (317)
T ss_dssp HHHHTTSEE--EETTTTEEEE
T ss_pred HHHHCCCEE--ecCCeEEEEe
Confidence 999999998 5667766653
No 2
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.1e-38 Score=312.67 Aligned_cols=271 Identities=23% Similarity=0.351 Sum_probs=218.1
Q ss_pred CCCceecCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCC--hHHHHHHHHHHhCC-Cc
Q 011237 181 TLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRS--EFHEELLKVVASLP-RK 257 (490)
Q Consensus 181 ~~~~~eva~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~--~~~~~L~~~~~~~~-~~ 257 (490)
.+.+.+++||||.+....+.......+|+|+|..+ ++.+|||||... ...+.+.+.+...+ .+
T Consensus 6 ~~~~~~v~~~v~~v~g~~p~p~~~~~~n~~li~~~--------------~~~ilID~G~~~~~~~~~~l~~~l~~~~~~i 71 (289)
T 4ad9_A 6 LQRVERLSNRVVRVLGCNPGPMTLQGTNTYLVGTG--------------PRRILIDTGEPAIPEYISCLKQALTEFNTAI 71 (289)
T ss_dssp CCSEEECSSSEEEEECSCCBTTTBTCCEEEEECSS--------------SSEEEECCCSTTCHHHHHHHHHHHHHTTCCE
T ss_pred CcchhccCCCeEEEeCCCCCCCcCCceEEEEEecC--------------CceEEEeCCCCCChHHHHHHHHHHHHcCCCc
Confidence 45678999999999654433223334566666543 458999999753 23345555555433 56
Q ss_pred eEEEecCCCccccCchhhccHHHHHHhC---CCCEEEeChhhHHhhcc-CCCCCCceecCCCceEEECCEEEEEEeCCCC
Q 011237 258 LIVFVTHHHRDHVDGEFIRGLSIIQKCN---PDAILLAHENTMRRIGK-DDWSLGYTSVSGSEDICVGGQRLTVVFSPGH 333 (490)
Q Consensus 258 ~~IviTH~H~DH~G~a~~~G~~~l~~~~---p~a~I~~~~~~~~~l~~-~~~~~~~~~~~~g~~l~lgg~~l~vi~tPGH 333 (490)
++||+||.|.||+| |+..|.+.+ ++++++++......... ......+..+.+|+.+.+||.+++++++|||
T Consensus 72 ~~Ii~TH~H~DH~g-----g~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~gg~~~~~~~~pGH 146 (289)
T 4ad9_A 72 QEIVVTHWHRDHSG-----GIGDICKSINNDTTYCIKKLPRNPQREEIIGNGEQQYVYLKDGDVIKTEGATLRVLYTPGH 146 (289)
T ss_dssp EEEECSCSSHHHHT-----THHHHHHHSCCSSCCCEEECCCSSCCCCCBTTTTBCEEECCTTCEEEETTEEEEEEECCSS
T ss_pred eEEEEcCCCCcccc-----cHHHHHHhhccCCCceEEecCCCcchhhhccCCCCceEEcCCCCEEEeCCeEEEEEECCCC
Confidence 79999999999999 999999886 57889987643211100 0122356789999999999999999999999
Q ss_pred CCCCeEEEECCCCEEEEccccCCCCccccccCCCCCHHHHHHHHHHHHcCCCCEEEcCCCCCCCChHHHHHHHHHHHHHH
Q 011237 334 TDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHALIPMHGRVNLWPKHMLCGYLKNRRAR 413 (490)
Q Consensus 334 T~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~L~~l~~~~ilPgHG~~~~~~~~~i~~~l~~~~~r 413 (490)
|+||+|+++++.++||+||++++..... ..++.+|++||+++.+++++.++||||.++.+..+.+.+|++++++|
T Consensus 147 t~~~~~~~~~~~~~lftGD~~~~~~~~~-----~~~~~~~~~sl~~l~~l~~~~v~pgHg~~~~~~~~~i~~~~~~~~~r 221 (289)
T 4ad9_A 147 TDDHMALLLEEENAIFSGDCILGEGTTV-----FEDLYDYMNSLKELLKIKADIIYPGHGPVIHNAEAKIQQYISHRNIR 221 (289)
T ss_dssp STTCEEEEETTTTEEEEETSSCSSSCCC-----CSCHHHHHHHHHHHHHHTCSEEEESSSSCBSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCEEEEecccCCCCCcC-----cCCHHHHHHHHHHHHcCCCCEEEeCCCChhcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765432 35899999999999999999999999999998889999999999999
Q ss_pred HHHHHHHHHcC---CCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc-cceeee
Q 011237 414 EAAILQAIENG---VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS-LESFNS 475 (490)
Q Consensus 414 ~~~il~~l~~g---~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~-~~~~~~ 475 (490)
+++|++++.++ +.|+.||++.+|+++|..++.++..++.+||++|+++|+|.+... ++.|+.
T Consensus 222 ~~~i~~~l~~~~~~~~t~~ei~~~~~~~~p~~l~~~a~~~~~ahL~~L~~~g~v~~~~~~~~~w~~ 287 (289)
T 4ad9_A 222 EQQILTLFRENFEKSFTVMELVKIIYKNTPENLHEMAKHNLLLHLKKLEKEGKIFSNTDPDKKWKA 287 (289)
T ss_dssp HHHHHHHHHHTTTCCBCHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHHHHTTSEEECCCSSCCEEE
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHCCcEEEEeCCCceeec
Confidence 99999999863 569999999999999999999999999999999999999987753 455643
No 3
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*
Probab=99.97 E-value=1.1e-30 Score=261.43 Aligned_cols=252 Identities=18% Similarity=0.203 Sum_probs=174.7
Q ss_pred CCceecCCceEEEecCCCCCCCcccccEEEE-ccCCCCCCCcceEEEecCCeEEEcCCCCCh---HHHHHHHHHHhCCCc
Q 011237 182 LSYQEYPPGVILVPMQSRTAKPFLTTNLIVF-APDSVSDDCGNHRFVAQGEALIVDPGCRSE---FHEELLKVVASLPRK 257 (490)
Q Consensus 182 ~~~~eva~Gv~~i~~~~~~~~p~~~~N~~~i-~~~~~~~~~~~~~~li~g~~iLIDtG~~~~---~~~~L~~~~~~~~~~ 257 (490)
..+.+|.+|||++. ....|+|++ .++ ++.+|||||.... ..+.+.+.+....++
T Consensus 7 ~~~~~v~~~v~~ig--------~~~~n~~li~~~~--------------~~~iLID~G~~~~~~~~~~~l~~~~~~~~~i 64 (303)
T 2vw8_A 7 SAPGQLDDDLCLLG--------DVQVPVFLLRLGE--------------ASWALVEGGISRDAELVWADLCRWVADPSQV 64 (303)
T ss_dssp CSSEEEETTEEEES--------CTTSCEEEEEEET--------------TEEEEECCCCGGGHHHHHHHHHHHCSCGGGE
T ss_pred CCceeecCCeEEec--------CCCceEEEEEeCC--------------CceEEEECCCCCcHHHHHHHHHHHhcCcccc
Confidence 45688999999991 223577777 343 4589999998642 223333331123456
Q ss_pred eEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccC---------------CC----------CCCceec
Q 011237 258 LIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKD---------------DW----------SLGYTSV 312 (490)
Q Consensus 258 ~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~---------------~~----------~~~~~~~ 312 (490)
++|++||.|.||+| |+..+++.+|+++|++++.+...+... .+ ..+...+
T Consensus 65 ~~Ii~TH~H~DH~g-----g~~~l~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (303)
T 2vw8_A 65 HYWLITHKHYDHCG-----LLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQRLPEACAWDALPVRAV 139 (303)
T ss_dssp EEEECCCCSTTTTT-----THHHHGGGCTTCEEEEEHHHHHHTTCHHHHHHHHHHHHHTCCTTCCCCCCCCGGGSCEEEE
T ss_pred eEEEeccCCccccC-----CHHHHHHhCCCCeEEECHHHHHHHhccchhhHHHHHHHHHHHhhcccccccCCCCCCceEc
Confidence 79999999999999 999999988999999998876554321 01 1223567
Q ss_pred CCCceEEECC-EEEEEEeCCCCCCCCeEEEECCCCEEEEccccCCCCc--cccccCCCCCHHHHHHHHHHHHcCCCC-EE
Q 011237 313 SGSEDICVGG-QRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGS--AVLDITAGGNMTDYFQSTYKFLELSPH-AL 388 (490)
Q Consensus 313 ~~g~~l~lgg-~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~--~~~~~~~~~~~~~~~~SL~~L~~l~~~-~i 388 (490)
.+|+.+++|+ .+++++++||||+||+|+++++.++||+||++..... .........+..+|++||+++++++++ ++
T Consensus 140 ~~g~~~~lg~g~~l~~i~~pGHt~g~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~d~~~~~~sl~~l~~l~~~~~v 219 (303)
T 2vw8_A 140 ADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALGEFDEAEGVWRPLVFDDMEAYLESLERLQRLPTLLQL 219 (303)
T ss_dssp CTTCEEEEETTEEEEEEECTTSSTTCEEEEETTTTEEEEETTTCEECTTTCSEECCCSSCHHHHHHHHHHHHTSSCCSEE
T ss_pred CCCCEEecCCCeEEEEEECCCCCcccEEEEECCCCEEEEcCccCcccCcccccCCCCCCCHHHHHHHHHHHhcCCCCeEE
Confidence 8999999987 9999999999999999999999999999999742211 111111357999999999999999999 99
Q ss_pred EcCCCCCCCChHHHHHHHHHHHHH-HHHHHHH-HHHcCC-CCHHHHHH---HhhcCCCccchHHHH-HHHHHHHHHHHHC
Q 011237 389 IPMHGRVNLWPKHMLCGYLKNRRA-REAAILQ-AIENGV-ETLFDIVA---NVYSEVPRSFWIPAA-SNVRLHVDHLADQ 461 (490)
Q Consensus 389 lPgHG~~~~~~~~~i~~~l~~~~~-r~~~il~-~l~~g~-~T~~ei~~---~~~~~l~~~~~~~a~-~~v~ahL~~L~~~ 461 (490)
+||||.+..+ +.+.+++++.++ ..+.+.+ .++++. .+..++++ .+|+..+...+..+. .++.+|+..+..+
T Consensus 220 ~pgHg~~~~~--~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~ 297 (303)
T 2vw8_A 220 IPGHGGLLRG--RLAADGAESAYTECLRLCRRLLWRQSMGESLDELSEELHRAWGGQSVDFLPGELHLGSMRRMLEILSR 297 (303)
T ss_dssp EESSSCEEEH--HHHHTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCccCc--hHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHH
Confidence 9999998753 456677766222 2222222 555432 15666655 678877766655453 5555555444443
Q ss_pred C
Q 011237 462 N 462 (490)
Q Consensus 462 g 462 (490)
.
T Consensus 298 ~ 298 (303)
T 2vw8_A 298 Q 298 (303)
T ss_dssp H
T ss_pred h
Confidence 3
No 4
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=99.96 E-value=4.5e-29 Score=238.64 Aligned_cols=193 Identities=15% Similarity=0.186 Sum_probs=148.2
Q ss_pred CceecCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHhC--CCceEE
Q 011237 183 SYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASL--PRKLIV 260 (490)
Q Consensus 183 ~~~eva~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~~--~~~~~I 260 (490)
.+++|++|||++..+.+........|+|++..+ ++.+|||||......+.+.+.+.+. .++++|
T Consensus 3 ~~~~i~~~v~~i~~~~~~~~~~~~~n~~li~~~--------------~~~iLiD~G~~~~~~~~~~~~l~~~~g~~i~~v 68 (223)
T 1m2x_A 3 KIEKLKDNLYVYTTYNTFNGTKYAANAVYLVTD--------------KGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMN 68 (223)
T ss_dssp EEEEEETTEEEEEEEEEETTEEEEEEEEEEEET--------------TEEEEESCCSSGGGHHHHHHHHHHHHCCCEEEE
T ss_pred eEEEeeCCEEEEEEeccCCCCcccccEEEEEeC--------------CEEEEEeCCCChhHHHHHHHHHHHHhCCCeEEE
Confidence 468899999998654221111122455555432 4589999998754334444444433 366799
Q ss_pred EecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCCCceecCCCceEEECCEEEEEEe-CCCCCCCCeE
Q 011237 261 FVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVF-SPGHTDGHVA 339 (490)
Q Consensus 261 viTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~~~~~~~g~~l~lgg~~l~vi~-tPGHT~g~i~ 339 (490)
|+||.|.||+| |+..+.+ ++++|++++.+...+.......+...+.+|+.+.+|+.++++++ +||||+|+++
T Consensus 69 i~TH~H~DH~g-----g~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~~pgHt~~~~~ 141 (223)
T 1m2x_A 69 IATHSHDDRAG-----GLEYFGK--IGAKTYSTKMTDSILAKENKPRAQYTFDNNKSFKVGKSEFQVYYPGKGHTADNVV 141 (223)
T ss_dssp ECSSSSTTTTT-----THHHHHH--TTCEEEEEHHHHHHHHHTTCCCCSEEESSCEEEEETTEEEEEECCCSSSSSSCCE
T ss_pred EeccCCccccC-----chhhHhh--CCCeEEEcHHHHHHHHhcCccCCceecCCCceEEECCEEEEEEecCCCCCCCCEE
Confidence 99999999999 9999987 58999999998887765443344577899999999999999996 9999999999
Q ss_pred EEECCCCEEEEccccCCCCccccccCCCCCHHHHHHHHHHHHcC--CCCEEEcCCCCCC
Q 011237 340 LLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLEL--SPHALIPMHGRVN 396 (490)
Q Consensus 340 l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~L~~l--~~~~ilPgHG~~~ 396 (490)
+++++.++||+||+++....+.+...+.++..+|++||++++++ +.+.++||||.+.
T Consensus 142 ~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~i~pgHg~~~ 200 (223)
T 1m2x_A 142 VWFPKEKVLVGGCIIKSADSKDLGYIGEAYVNDWTQSVHNIQQKFSGAQYVVAGHDDWK 200 (223)
T ss_dssp EEETTTTEEEEETTSCCTTCSSCCCCTTCCHHHHHHHHHHHHHHTTTCSEEEESBSCCC
T ss_pred EEECCCCEEEEecccccCcccccccCCCCCHHHHHHHHHHHHHhCCCCCEEEeCCCCcC
Confidence 99998999999998765433333334568999999999999987 7889999999987
No 5
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0
Probab=99.96 E-value=2e-28 Score=232.97 Aligned_cols=197 Identities=16% Similarity=0.173 Sum_probs=154.8
Q ss_pred CCCCcee-cCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHh--CCC
Q 011237 180 PTLSYQE-YPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVAS--LPR 256 (490)
Q Consensus 180 ~~~~~~e-va~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~--~~~ 256 (490)
+++.+++ |++|||++........+....|+|++..+ ++.+|||||........+.+.+.. ..+
T Consensus 3 ~~~~~~~~l~~~v~~~~~~~~~~~~~~~~n~~li~~~--------------~~~iLiD~G~~~~~~~~~~~~l~~~~~~~ 68 (219)
T 3l6n_A 3 KDFVIEPPIKNNLHIYKTFGVFGGKEYSANSMYLVTK--------------KGVVLFDVPWEKVQYQSLMDTIKKRHNLP 68 (219)
T ss_dssp CCCEECCCBTTTEEEEEEEEEETTEEEEEEEEEEEET--------------TEEEEESCCSSGGGHHHHHHHHHHHHSCC
T ss_pred CccceEeeecCCEEEEEeccccCCccccceEEEEEeC--------------CEEEEEeCCCChHHHHHHHHHHHHhcCCc
Confidence 4677889 99999999554221111122455555442 458999999876444455544443 346
Q ss_pred ceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCCCceecCCCceEEECCEEEEEEe-CCCCCC
Q 011237 257 KLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVF-SPGHTD 335 (490)
Q Consensus 257 ~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~~~~~~~g~~l~lgg~~l~vi~-tPGHT~ 335 (490)
+++|++||.|.||+| |+..|++. +++||+++.+...+...........+.+|+.+.+|+.++++++ +||||+
T Consensus 69 i~~ii~TH~H~DH~g-----g~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~~pgHt~ 141 (219)
T 3l6n_A 69 VVAVFATHSHDDRAG-----DLSFFNNK--GIKTYATAKTNEFLKKDGKATSTEIIKTGKPYRIGGEEFVVDFLGEGHTA 141 (219)
T ss_dssp EEEEECSSSSTTTTC-----CTHHHHHT--TCEEEECHHHHHHHHHTTCCCCSEECCTTSEEEETTEEEEEECCCCSSSS
T ss_pred eeEEEecCCCccccc-----CHHHHHhC--CCEEEEcHHHHHHHHhcCCCCCcEecCCCCEEEECCEEEEEEeCCCCCCC
Confidence 779999999999999 99999873 8999999999988876655566788999999999999999998 899999
Q ss_pred CCeEEEECCCCEEEEccccCCCCccccccCCCCCHHHHHHHHHHHHcC--CCCEEEcCCCCCCC
Q 011237 336 GHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLEL--SPHALIPMHGRVNL 397 (490)
Q Consensus 336 g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~L~~l--~~~~ilPgHG~~~~ 397 (490)
|++++++++.++||+||+++..+.+.+...+.++..+|++|++++.++ +.+.++||||++..
T Consensus 142 g~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~v~pgHg~~~~ 205 (219)
T 3l6n_A 142 DNVVVWFPKYNVLDGGCLVKSNSATDLGYIKEANVEQWPKTINKLKAKYSKATLIIPGHDEWKG 205 (219)
T ss_dssp SCCEEEETTTTEEEEETTSCCTTCSSCCCCTTCCTTTHHHHHHHHHHHCTTCSEEEESBSCCTT
T ss_pred CCEEEEECCCCEEEECCeeeccccccccccCccCHHHHHHHHHHHHHhCCCCCEEECCCCCCCC
Confidence 999999999999999999875544444434678899999999999985 67899999999865
No 6
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=99.96 E-value=4.2e-29 Score=246.47 Aligned_cols=194 Identities=15% Similarity=0.189 Sum_probs=144.0
Q ss_pred CCCceecCCceEEEecCCCCCCCcc--cccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHhCC--C
Q 011237 181 TLSYQEYPPGVILVPMQSRTAKPFL--TTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLP--R 256 (490)
Q Consensus 181 ~~~~~eva~Gv~~i~~~~~~~~p~~--~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~~~--~ 256 (490)
++.++||+||||.+..... ..+++ .+|+|+|.++ ++++|||||.+....+++.+.+++.. .
T Consensus 48 ~~~~~~~~~~v~~~~~~~~-~~~~G~~~~N~ylv~~~--------------~~~ilIDtg~~~~~~~~l~~~i~~~~~~~ 112 (270)
T 4eyb_A 48 DLVFRQLAPNVWQHTSYLD-MPGFGAVASNGLIVRDG--------------GRVLVVDTAWTDDQTAQILNWIKQEINLP 112 (270)
T ss_dssp TEEEEEEETTEEEEEEEEE-ETTTEEEEEEEEEEEET--------------TEEEEESCCSSHHHHHHHHHHHHHHTCCC
T ss_pred cceEEEecCCeEEEEeecc-cCCCCccceEEEEEEEC--------------CEEEEEeCCCCHHHHHHHHHHHHHhcCCc
Confidence 4568899999998632111 11222 2455555443 45899999988776667766665432 3
Q ss_pred ceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCC--------CceecCCCceEEECCEEEEEE
Q 011237 257 KLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSL--------GYTSVSGSEDICVGGQRLTVV 328 (490)
Q Consensus 257 ~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~--------~~~~~~~g~~l~lgg~~l~vi 328 (490)
+++||+||.|+||+| |+..|++. ++++++++.+...+....... ....+.++..+..|+.. .++
T Consensus 113 I~~Ii~TH~H~DH~g-----g~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~ 184 (270)
T 4eyb_A 113 VALAVVTHAHQDKMG-----GMDALHAA--GIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLK-VFY 184 (270)
T ss_dssp EEEEEECSSSHHHHT-----THHHHHHT--TCEEEEEHHHHHHGGGGTCCCCSEEECBCTTSBBCGGGSTTCTTEE-EEC
T ss_pred eEEEEeCCCChhhcC-----cHHHHHHC--CCeEEECHHHHHHHHhcCccccccccCCCCceeecCceeeecCcee-EEe
Confidence 569999999999999 99999886 899999999888776543221 12234555556566632 345
Q ss_pred eCCCCCCCCeEEEECCCCEEEEccccCCCCccccccCCCCCHHHHHHHHHHHHcC--CCCEEEcCCCCCCC
Q 011237 329 FSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLEL--SPHALIPMHGRVNL 397 (490)
Q Consensus 329 ~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~L~~l--~~~~ilPgHG~~~~ 397 (490)
++||||+||+|+|++++++||+||+++....+.+...+++++.+|++||++++++ +.++|+||||++..
T Consensus 185 ~~pgHT~g~~~~~~~~~~vLfsGD~l~~~~~~~~~~~~~~~~~~~~~Sl~~l~~~~~d~~~v~PGHG~p~~ 255 (270)
T 4eyb_A 185 PGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDS 255 (270)
T ss_dssp CCSSSSSSCCEEEETTSSEEECTTTCCCTTCSCCCCCTTCCTTTHHHHHHHHHHHSTTCCEEECSSSCCBC
T ss_pred cccccCCCCEEEEecCCcEEEEeCeecCCCCCCcCCCCCCCHHHHHHHHHHHHhhCCCCcEEEcCCCCCCC
Confidence 8899999999999999999999999987776666555678999999999999874 56789999999864
No 7
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural GE consortium, NESG, NSR435A, DFA5, electron transport; 1.80A {Nostoc SP} PDB: 4fek_A
Probab=99.96 E-value=2.7e-28 Score=239.51 Aligned_cols=221 Identities=14% Similarity=0.145 Sum_probs=157.3
Q ss_pred cCCCCCCCceecCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEec-CCeEEEcCCCCChHHHHHHHHHHh-
Q 011237 176 WKVPPTLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQ-GEALIVDPGCRSEFHEELLKVVAS- 253 (490)
Q Consensus 176 ~~~~~~~~~~eva~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~-g~~iLIDtG~~~~~~~~L~~~~~~- 253 (490)
|..+..+.+.||+||||+++.......-|. +.+ ....+..+|+|++. ++.+|||||... ..+.+.+.+++
T Consensus 3 ~~~~~~~~~~~i~~~vy~v~~~~~~~~~f~--~~~-----~~~~g~~~N~yli~~~~~iLID~G~~~-~~~~~~~~l~~~ 74 (262)
T 3hnn_A 3 DSKPRDVQVLPIATNTKVLRARSWSRLRFE--IEY-----ALERGTTSNSYVIEGDKTAIIDPPVES-FMKIYLEALQQT 74 (262)
T ss_dssp -CCSCEEEEEEEETTEEEEEEEESSCSSSS--GGG-----TTCCCEEEEEEEEESSSEEEECCCCHH-HHHHHHHHHHHH
T ss_pred CCccccceeEeecCCeEEEEEeeCCcccee--eee-----ccCCCcEEEEEEEECCCEEEEECCCcc-hHHHHHHHHHHh
Confidence 345567788999999999975533211111 100 11223445666664 358999999863 22333333332
Q ss_pred --CCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccC--CCCCCceecCCCceEEEC-CEEEEEE
Q 011237 254 --LPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKD--DWSLGYTSVSGSEDICVG-GQRLTVV 328 (490)
Q Consensus 254 --~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~--~~~~~~~~~~~g~~l~lg-g~~l~vi 328 (490)
..++++|++||.|.||+| |+..+++.+|+++|++++.+...+... ....+...+++|+.+++| |.+++++
T Consensus 75 ~~~~~i~~IilTH~H~DH~g-----g~~~l~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~g~~l~lg~~~~~~~i 149 (262)
T 3hnn_A 75 VNLKKLDYVILGHFSPNRIP-----TFKALLELAPQITFVCSLPAAGDLRAAFPDDNLNILPMRGKETLDLGKGHVLKFL 149 (262)
T ss_dssp SCGGGEEEEECSSCCGGGHH-----HHHHHHHHCTTCEEEECHHHHHHHHHHSSSSCCEEEECCSSCEEECSTTCEEEEE
T ss_pred CChhhCCEEEECCCCcchhc-----hHHHHHHHCCCCEEEECHHHHHHHHHHhCCCCCceEEeCCCCEEEcCCCcEEEEE
Confidence 345679999999999999 999999999999999999988766431 112346778999999998 8999999
Q ss_pred eCCC-CCCCCeEEEECCCCEEEEccccCCCCcc--cccc---------------CCCCCHHHHHHHHHHHHcCCCCEEEc
Q 011237 329 FSPG-HTDGHVALLHASTNSLIVGDHCVGQGSA--VLDI---------------TAGGNMTDYFQSTYKFLELSPHALIP 390 (490)
Q Consensus 329 ~tPG-HT~g~i~l~~~~~~vLftGD~l~~~~~~--~~~~---------------~~~~~~~~~~~SL~~L~~l~~~~ilP 390 (490)
++|| ||+|+++++.+++++||+||++...... .+.. ....+..++.+||++|+++++++|+|
T Consensus 150 ~tpg~Ht~g~~~~~~~~~~~lfsGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~L~~~~i~P 229 (262)
T 3hnn_A 150 PIPSPRWPAGLCTYDVQTQILYTDKIFGAHICGDDVFDDNWESFKEDQRYYFNCLMAPHAIHVEAALEKISDLQVRLYAV 229 (262)
T ss_dssp ECCCSSCTTCEEEEETTTTEEEEETTTCCCCCCSCCEESCGGGTHHHHHHHHHHHTGGGHHHHHHHHHHHTTSCCSEEEE
T ss_pred ECCCCCCCCeeEEEeCCCCEEEEeecCccccCchhcccccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCCCCCEEEC
Confidence 9999 9999999999999999999995432221 1110 01123578999999999999999999
Q ss_pred CCCCCCCC-hHHHHHHHHHH
Q 011237 391 MHGRVNLW-PKHMLCGYLKN 409 (490)
Q Consensus 391 gHG~~~~~-~~~~i~~~l~~ 409 (490)
|||+++.+ ..+.++.|++.
T Consensus 230 gHG~~~~~~~~~~~~~y~~w 249 (262)
T 3hnn_A 230 GHGPLVRTSLIALTQAYADW 249 (262)
T ss_dssp SSSSEESTTHHHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHH
Confidence 99998763 34455555543
No 8
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=99.96 E-value=2.1e-28 Score=235.51 Aligned_cols=197 Identities=15% Similarity=0.202 Sum_probs=149.4
Q ss_pred CCCCceecCCceEEEecCCCCCC-CcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHhC--CC
Q 011237 180 PTLSYQEYPPGVILVPMQSRTAK-PFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASL--PR 256 (490)
Q Consensus 180 ~~~~~~eva~Gv~~i~~~~~~~~-p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~~--~~ 256 (490)
..+.+++|++|||++....+... .....|+|+|..+ ++.+|||||........+.+.+.+. .+
T Consensus 9 ~~~~~~~i~~~v~~i~~~~~~~~~g~~~~n~~li~~~--------------~~~iLiD~G~~~~~~~~~~~~l~~~~~~~ 74 (232)
T 1a7t_A 9 DDISITQLSDKVYTYVSLAEIEGWGMVPSNGMIVINN--------------HQAALLDTPINDAQTEMLVNWVTDSLHAK 74 (232)
T ss_dssp SSEEEEECSSSEEEEEEEEEETTTEEEEEEEEEEEET--------------TEEEEESCCSSHHHHHHHHHHHHHHHCCE
T ss_pred CCeEEEEecCCeEEEEeccCCCCCccccceEEEEEeC--------------CEEEEEeCCCCHHHHHHHHHHHHHhcCCC
Confidence 45677899999999955321100 0111345544432 4589999998754334444444433 35
Q ss_pred ceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCCCceecCCCceEEECCEEEEEEe-CCCCCC
Q 011237 257 KLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVF-SPGHTD 335 (490)
Q Consensus 257 ~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~~~~~~~g~~l~lgg~~l~vi~-tPGHT~ 335 (490)
+++|++||.|.||+| |+..|.+ ++++|++++.+...+.......+...+.+|+.+.+|+.++++++ +||||+
T Consensus 75 i~~ii~TH~H~DH~g-----g~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~~pgHt~ 147 (232)
T 1a7t_A 75 VTTFIPNHWHGDCIG-----GLGYLQR--KGVQSYANQMTIDLAKEKGLPVPEHGFTDSLTVSLDGMPLQCYYLGGGHAT 147 (232)
T ss_dssp EEEEECSSSSHHHHT-----THHHHHH--TTCEEEEEHHHHHHHHHHTCCCCSEEESSEEEEEETTEEEEEECCCCSSST
T ss_pred eEEEEeCCCCccccC-----CHHHHHh--CCCeEEEcHHHHHHHHhcCCCCCceecCCCCEEEECCeEEEEEeCCCCCCC
Confidence 679999999999999 9999987 38999999998877765444445677889999999999999997 999999
Q ss_pred CCeEEEECCCCEEEEccccCCCCccccccCCCCCHHHHHHHHHHHHcC--CCCEEEcCCCCCCC
Q 011237 336 GHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLEL--SPHALIPMHGRVNL 397 (490)
Q Consensus 336 g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~L~~l--~~~~ilPgHG~~~~ 397 (490)
||++++++++++||+||+++......+...+.++..+|++||++++++ +.+.++||||.+..
T Consensus 148 g~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~v~pgHg~~~~ 211 (232)
T 1a7t_A 148 DNIVVWLPTENILFGGCMLKDNQTTSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGHGNYGG 211 (232)
T ss_dssp TCCEEEETTTTEEEEETTSCCTTCCSCCCCTTCCTTTHHHHHHHHHHHCTTCSEEEESSSCCBC
T ss_pred CCEEEEECCCCEEEEcCcccccCCcccccCCCCCHHHHHHHHHHHHhhCCCCCEEECCCCCccc
Confidence 999999999999999999875433333333567889999999999987 78899999999875
No 9
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A
Probab=99.95 E-value=1e-27 Score=234.96 Aligned_cols=217 Identities=15% Similarity=0.206 Sum_probs=162.2
Q ss_pred CCCCCceecCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHhCC---
Q 011237 179 PPTLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLP--- 255 (490)
Q Consensus 179 ~~~~~~~eva~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~~~--- 255 (490)
...+.+.+|.+|||.+. ....|+|+|..+ ++.+|||||.... ...+.+.+++.+
T Consensus 5 ~~~~~~~~i~~~v~~i~--------~~~~n~~li~~~--------------~~~iLID~G~~~~-~~~l~~~l~~~g~~~ 61 (263)
T 1k07_A 5 PNPFPPFRIAGNLYYVG--------TDDLASYLIVTP--------------RGNILINSDLEAN-VPMIKASIKKLGFKF 61 (263)
T ss_dssp CCBCCCEEEETTEEECC--------BSSBCCEEEEET--------------TEEEEECCCCGGG-HHHHHHHHHHTTCCG
T ss_pred cCCcCCeEEECCEEEEC--------CCCeEEEEEEeC--------------CceEEEECCCccc-HHHHHHHHHHcCCCH
Confidence 34566789999999992 223577777553 4589999998633 234555555543
Q ss_pred -CceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCC-------------CC--CCceecCCCceEE
Q 011237 256 -RKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDD-------------WS--LGYTSVSGSEDIC 319 (490)
Q Consensus 256 -~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~-------------~~--~~~~~~~~g~~l~ 319 (490)
++++||+||.|.||+| |+..|++. ++++|++++.+...+.... +. .....+.+|+.+.
T Consensus 62 ~~i~~IilTH~H~DH~g-----g~~~l~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 135 (263)
T 1k07_A 62 SDTKILLISHAHFDHAA-----GSELIKQQ-TKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLHDGERVE 135 (263)
T ss_dssp GGEEEEECSSSSHHHHT-----THHHHHHH-HCCEEEEEHHHHHHHHTTTTTCTTTTTCGGGCCCCCCCSEEECTTCEEE
T ss_pred HHCcEEEeCCCCccccc-----cHHHHHHh-cCCEEEEcHHHHHHHhcccccccccCccccccCCCCCcceEeCCCCEEE
Confidence 4679999999999999 99999876 4799999998877664321 10 1345688999999
Q ss_pred ECCEEEEEEeCCCCCCCCeEEEECC---C---CEEEEccccCCCCcccccc-CCCCCHHHHHHHHHHHHcCCCCEEEcCC
Q 011237 320 VGGQRLTVVFSPGHTDGHVALLHAS---T---NSLIVGDHCVGQGSAVLDI-TAGGNMTDYFQSTYKFLELSPHALIPMH 392 (490)
Q Consensus 320 lgg~~l~vi~tPGHT~g~i~l~~~~---~---~vLftGD~l~~~~~~~~~~-~~~~~~~~~~~SL~~L~~l~~~~ilPgH 392 (490)
+|+.+++++++||||+||+|++++. . ++||+||+........... ....++.+|++||++|+++++++++|||
T Consensus 136 ~g~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~i~pgH 215 (263)
T 1k07_A 136 LGGTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIGVNPGYKLVDNITYPKIAEDYKHSIKVLESMRCDIFLGSH 215 (263)
T ss_dssp ETTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEEECCCCCCTTCCCSSCSSCTTHHHHHHHHHHHHHTBCCSEEEESB
T ss_pred ECCeEEEEEECCCCCCCcEEEEEecccCCceeEEEEECCcccCCCccccCCCcCcccHHHHHHHHHHHHccCCCEEEcCC
Confidence 9999999999999999999999875 2 5999999865222111111 1235789999999999999999999999
Q ss_pred CCCCCChHHH-------------HHHHHHHHHHHHHHHHHHHHcC
Q 011237 393 GRVNLWPKHM-------------LCGYLKNRRAREAAILQAIENG 424 (490)
Q Consensus 393 G~~~~~~~~~-------------i~~~l~~~~~r~~~il~~l~~g 424 (490)
|.++....+. ..++.++..++++++++.++++
T Consensus 216 g~~~~~~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~~~~l~~~ 260 (263)
T 1k07_A 216 AGMFDLKNKYVLLSKGQNNPFVDPTGCKNYIEQKANDFYTELKKQ 260 (263)
T ss_dssp HHHHTHHHHHHHHHTTCSCTTBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHhcccCCCCCCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9876533321 2377888888999999998764
No 10
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=99.95 E-value=2e-27 Score=230.04 Aligned_cols=191 Identities=18% Similarity=0.220 Sum_probs=143.0
Q ss_pred CCCCCceecCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHhC-C-C
Q 011237 179 PPTLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASL-P-R 256 (490)
Q Consensus 179 ~~~~~~~eva~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~~-~-~ 256 (490)
+..+.+++|++|||++.... ++ ..|+|++..++ ++.+|||||......+.+.+.+++. + .
T Consensus 7 ~~~~~~~~i~~~v~~i~~~~----~~-~~n~~li~~~~-------------~~~iLiD~G~~~~~~~~l~~~l~~~~~~~ 68 (246)
T 2fhx_A 7 PYNLTATKIDSDVFVVTDRD----FY-SSNVLVAKMLD-------------GTVVIVSSPFENLGTQTLMDWVAKTMKPK 68 (246)
T ss_dssp STTEEEEEEETTEEEEEETT----TT-TEEEEEEECTT-------------SEEEEESCCSSHHHHHHHHHHHHHHHCCS
T ss_pred CCCceEEEecCCEEEEECcC----CC-CCCEEEEEeCC-------------CeEEEEeCCCCHHHHHHHHHHHHHhcCCC
Confidence 34667889999999996542 11 24666664321 3489999998754444444444332 2 2
Q ss_pred ceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhcc-------------------------CCCCC-Cce
Q 011237 257 KLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGK-------------------------DDWSL-GYT 310 (490)
Q Consensus 257 ~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~-------------------------~~~~~-~~~ 310 (490)
..+||+||.|.||+| |+..|.+ + +++|++++.+...+.. ..... ...
T Consensus 69 ~~~vi~TH~H~DH~g-----g~~~l~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (246)
T 2fhx_A 69 KVVAINTHFHLDGTG-----GNEIYKK-M-GAETWSSDLTKQLRLEENKKDRIKAAEFYKNEDLKRRILSSHPVPADNVF 141 (246)
T ss_dssp EEEEECCSSSHHHHT-----THHHHHH-T-TCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTCCCCCSEEE
T ss_pred cEEEEeCCCCccccC-----hHHHHhh-c-CCEEEEcHHHHHHHHhcchhhhHHHHhhhccccchhhhcccccCCCCcee
Confidence 237999999999999 9999987 3 8999999887654421 00011 123
Q ss_pred ecCCCceEEECCEEEEEEe-CCCCCCCCeEEEECCCCEEEEccccCCCCccccccCCCCCHHHHHHHHHHHHcCCCCEEE
Q 011237 311 SVSGSEDICVGGQRLTVVF-SPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHALI 389 (490)
Q Consensus 311 ~~~~g~~l~lgg~~l~vi~-tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~L~~l~~~~il 389 (490)
.+.+|+.+++||.++++++ +||||+||+++++++.++||+||+++....+. .+.++..+|++||++|++++++.++
T Consensus 142 ~~~~g~~l~~g~~~i~~~~~~pGHt~g~~~~~~~~~~~lf~GD~~~~~~~~~---~~~~~~~~~~~sl~~l~~l~~~~i~ 218 (246)
T 2fhx_A 142 DLKQGKVFSFSNELVEVSFPGPAHSPDNVVVYFPKKKLLFGGCMIKPKELGY---LGDANVKAWPDSARRLKKFDAKIVI 218 (246)
T ss_dssp CTTTCEEEEETTEEEEEECCCCSSSTTCCEEEETTTTEEEEETTCCSSCCCC---CTTCCTTTHHHHHHHGGGSCCSEEE
T ss_pred ecCCCCEEEECCEEEEEEeCCCCCCCCCEEEEEcCCCEEEECCEeccCCCCC---CCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 5789999999999999996 99999999999999999999999987643332 2456899999999999999999999
Q ss_pred cCCCCCCC
Q 011237 390 PMHGRVNL 397 (490)
Q Consensus 390 PgHG~~~~ 397 (490)
||||.++.
T Consensus 219 pgHg~~~~ 226 (246)
T 2fhx_A 219 PGHGEWGG 226 (246)
T ss_dssp ESBSCCBS
T ss_pred CCCCCcCC
Confidence 99999875
No 11
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Probab=99.95 E-value=1.4e-27 Score=228.93 Aligned_cols=198 Identities=18% Similarity=0.231 Sum_probs=148.4
Q ss_pred CCCCceecCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHh--CCCc
Q 011237 180 PTLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVAS--LPRK 257 (490)
Q Consensus 180 ~~~~~~eva~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~--~~~~ 257 (490)
..+.+++|++|||++.............|+|++..+ ++.+|||||......+.+.+.+.+ ..++
T Consensus 14 ~~~~~~~i~~~v~~~~~~~~~~~~~~~~n~~li~~~--------------~~~iliD~G~~~~~~~~~~~~l~~~~~~~i 79 (227)
T 1mqo_A 14 GTISISQLNKNVWVHTELGSFNGEAVPSNGLVLNTS--------------KGLVLVDSSWDDKLTKELIEMVEKKFQKRV 79 (227)
T ss_dssp SSEEEEEEETTEEEEEEEEEETTEEEEEEEEEEEET--------------TEEEEESCCSSHHHHHHHHHHHHHHHTSCE
T ss_pred CcEEEEEecCCeEEEEeeecccCceecceEEEEEeC--------------CeEEEEECCCChHHHHHHHHHHHHhcCCCc
Confidence 456778999999998432110000112344444332 458999999886433344444433 4567
Q ss_pred eEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCCCceecCCCceEEECCEEEEEE-eCCCCCCC
Q 011237 258 LIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVV-FSPGHTDG 336 (490)
Q Consensus 258 ~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~~~~~~~g~~l~lgg~~l~vi-~tPGHT~g 336 (490)
++|++||.|+||+| |+..|.+. +++|++++.+...+....+..+...+.+|+.+.+|+.+++++ ++||||+|
T Consensus 80 ~~ii~TH~H~DH~g-----g~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~pgHt~g 152 (227)
T 1mqo_A 80 TDVIITHAHADRIG-----GIKTLKER--GIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTED 152 (227)
T ss_dssp EEEECCCCSHHHHT-----THHHHHHH--TCEEECBHHHHHHHHHTTCCCCCCCBCSEEEEEETTEEEEEECCCCSSSSS
T ss_pred eEEEeCCCCchhcc-----chHHHhhC--CcEEEeccchHHHHHhcCCCCCccccCCCCeeeECCEEEEEEecCCCCCCC
Confidence 89999999999999 99999877 799999998877765444333456678889999999999998 69999999
Q ss_pred CeEEEECCCCEEEEccccCCCCccccccCCCCCHHHHHHHHHHHHcC--CCCEEEcCCCCCCCC
Q 011237 337 HVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLEL--SPHALIPMHGRVNLW 398 (490)
Q Consensus 337 ~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~L~~l--~~~~ilPgHG~~~~~ 398 (490)
|+++++++.++||+||+++....+.+...+.++..+|++||++++++ +++.++||||.+..+
T Consensus 153 ~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~i~pgHg~~~~~ 216 (227)
T 1mqo_A 153 NIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDK 216 (227)
T ss_dssp CCEEEETTTTEEEEETTSCCTTCCSCCCCTTCCHHHHHHHHHHHHHHCCSCSEEEESSSCCBCT
T ss_pred CEEEEECCCCEEEEeeeeeccCccccCcCCCCCHHHHHHHHHHHHHhcCCCCEEEcCCCCcccc
Confidence 99999998999999999875433333333567899999999999986 788999999998764
No 12
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Probab=99.95 E-value=1.1e-27 Score=235.64 Aligned_cols=195 Identities=14% Similarity=0.160 Sum_probs=142.6
Q ss_pred CCCCceecCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHhC-C-Cc
Q 011237 180 PTLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASL-P-RK 257 (490)
Q Consensus 180 ~~~~~~eva~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~~-~-~~ 257 (490)
..+.+.+|.+|+|+++...+...+....|+|+|..+ ++.+|||||.+......+.+.+++. + ++
T Consensus 41 g~~~~~~l~dgv~~~~~~~~~~~~~~~~n~~li~~~--------------~~~iLID~G~~~~~~~~l~~~l~~~~g~~i 106 (265)
T 2y8b_A 41 GEVRLYKIGDGVWSHIATQKLGDTVYSSNGLIVRDA--------------DELLLIDTAWGAKNTVALLAEIEKQIGLPV 106 (265)
T ss_dssp TCCEEEEEETTEEEEEEEEEETTEEEEEEEEEEEET--------------TEEEEESCCSSHHHHHHHHHHHHHHTCSCE
T ss_pred CCceEEEecCCeEEEeccccCCCCcccceEEEEEEC--------------CeEEEEeCCCCHHHHHHHHHHHHHhcCCCe
Confidence 467788999999998542111001122355544432 4589999998754444555555443 3 56
Q ss_pred eEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCCCcee----cCCCceEEECCEEEEE-EeCCC
Q 011237 258 LIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTS----VSGSEDICVGGQRLTV-VFSPG 332 (490)
Q Consensus 258 ~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~~~~----~~~g~~l~lgg~~l~v-i~tPG 332 (490)
++|++||.|.||+| |+..+.+. +++|++++.+.+.+........... .++|+.+.+|+ +++ +++||
T Consensus 107 ~~VilTH~H~DH~g-----g~~~~~~~--~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~v~~~~pG 177 (265)
T 2y8b_A 107 TRSISTHFHDDRVG-----GVDVLRAA--GVATYTSPLTRQLAEAAGNEVPAHSLKALSSSGDVVRFGP--VEVFYPGAA 177 (265)
T ss_dssp EEEECSSSSHHHHT-----THHHHHHT--TCEEEECHHHHHHHHHTTCCCCSEECSSCSSTTEEEEETT--EEEEECCSS
T ss_pred EEEEeCCCChhhcC-----CHHHHhhC--CCeEEECHHHHHHHHhcccccccccccccCCCCcEEeecC--EEEEecCCC
Confidence 79999999999999 99998874 8999999998887654321111122 36788888887 566 79999
Q ss_pred CCCCCeEEEECCCCEEEEccccCCCCccccccCCCCCHHHHHHHHHHHHcC--CCCEEEcCCCCCCC
Q 011237 333 HTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLEL--SPHALIPMHGRVNL 397 (490)
Q Consensus 333 HT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~L~~l--~~~~ilPgHG~~~~ 397 (490)
||+||++++++++++||+||+++....+.+....+.+..+|.+|++++.++ +.+.++||||.+..
T Consensus 178 Ht~g~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~d~~~~~~sl~~l~~~~~~~~~v~pgHg~~~~ 244 (265)
T 2y8b_A 178 HSGDNLVVYVPAVRVLFGGCAVHEASRESAGNVADANLAEWPATIKRIQQRYPEAEVVIPGHGLPGG 244 (265)
T ss_dssp SSTTCCEEEETTTTEEEEETTSCCTTCCSCCCCTTCCTTTHHHHHHHHHHHCTTCSEEEESSSCCBC
T ss_pred CCCCCEEEEecCCCEEEEccccccCCCcccCcCCcCCHHHHHHHHHHHHhhCCCCCEEECCCCCCCC
Confidence 999999999998899999999876533333333457889999999999987 77899999999874
No 13
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=99.95 E-value=1.1e-27 Score=263.64 Aligned_cols=274 Identities=14% Similarity=0.153 Sum_probs=191.4
Q ss_pred EEEeEcCCCc-cccccccccCCHHHHHHHHHccCCCCCccChhhhhhhhchhhhccccCCCCCCCceecCCceEEEecCC
Q 011237 120 YIMGKLLDGN-QILQEGCKWMSTQSCINCLAEVKPSTDRVGPLVVIGLLNDLVQWRKWKVPPTLSYQEYPPGVILVPMQS 198 (490)
Q Consensus 120 f~~a~lp~~q-~~e~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~ag~~~~~~~~~~~~~~~~~~~~eva~Gv~~i~~~~ 198 (490)
=|+|.++.++ ..+.....|-.. ..+.+... ..+..+-|- +-.... .+....+.||.+|||+++
T Consensus 55 g~~~~~~~~~~~~~~~~~~~~~~--~~~f~~~~-~~~~~v~ps----lw~~~~------l~~~~~l~~V~~gVy~i~--- 118 (658)
T 2cfu_A 55 GLIRRPERLLIRNPDGSVAWQLG--GYDFLLDG-KPRDSINPS----LQRQAL------LNLKYGLFEVAEGIYQVR--- 118 (658)
T ss_dssp TEEECCSSCEEECTTSCEEEECG--GGGGGTTC-CCCTTSCHH----HHHHHH------HTTCCEEEEEETTEEEEE---
T ss_pred CCcccCCccceeCCCCCEeeccc--cccccccC-CCCCCcChH----HHHHHH------hhccCCcEEEeCCEEEEe---
Confidence 3678887777 345566666542 23333332 234555552 221111 122456789999999994
Q ss_pred CCCCCcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHh---CCCceEEEecCCCccccCchhh
Q 011237 199 RTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVAS---LPRKLIVFVTHHHRDHVDGEFI 275 (490)
Q Consensus 199 ~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~---~~~~~~IviTH~H~DH~G~a~~ 275 (490)
+....|+|+|.++ ++.+|||||......+.+.+.+.+ ...+++||+||.|.||+|
T Consensus 119 ----g~~~~N~ylI~~~--------------~g~iLIDtG~~~~~a~~~l~~i~~~~~~~~I~~IIlTH~H~DH~G---- 176 (658)
T 2cfu_A 119 ----GFDLANITFIRGD--------------SGWIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFG---- 176 (658)
T ss_dssp ----SSSSSCEEEEECS--------------SSEEEECCCSSHHHHHHHHHHHHHHHCCCCEEEEECSBSCHHHHT----
T ss_pred ----cCCCeEEEEEEEC--------------CEEEEEECCCCHHHHHHHHHHHHhhCCCCCceEEEECCCChhhhC----
Confidence 2234678777653 468999999987654444444332 456779999999999999
Q ss_pred ccHHHHHHh----CCCCEEEeChhhHHhhcc------------------CC-----------------------CCCCce
Q 011237 276 RGLSIIQKC----NPDAILLAHENTMRRIGK------------------DD-----------------------WSLGYT 310 (490)
Q Consensus 276 ~G~~~l~~~----~p~a~I~~~~~~~~~l~~------------------~~-----------------------~~~~~~ 310 (490)
|+..|.+. +++++|++|+.+.+.+.. .. ...+..
T Consensus 177 -G~~~l~~~~~~~~~~a~V~a~~~~~~~~~~e~~~~g~~~~~r~~~~~g~~lp~~~~~~v~~~l~~~~~~g~~~~~~p~~ 255 (658)
T 2cfu_A 177 -GVRGLVEPQQVASGAVQIIAPAGFMEAAIKENVLAGNAMMRRATYQYGTQLPKGPQGQVDMAIGKGLARGPLSLLAPTR 255 (658)
T ss_dssp -TGGGTCCHHHHHTTSSEEEEETTHHHHHC---CTTHHHHHHHHHHHTTTTSCBSTTSBCCCSSSSCCCCSCCCCCCCSE
T ss_pred -CHHHHHhhhhccCCCCEEEEchhHHHHHhhhhhhhhhHHHHHHHHHhccCCChhhhhhhhhcccccccCCCccCCCCcE
Confidence 99888752 579999999875443210 00 001223
Q ss_pred ec-CCCceEEECCEEEEEEeCCCC-CCCCeEEEECCCCEEEEccccCCCCccccc---cCCCCCHHHHHHHHHHHHcC--
Q 011237 311 SV-SGSEDICVGGQRLTVVFSPGH-TDGHVALLHASTNSLIVGDHCVGQGSAVLD---ITAGGNMTDYFQSTYKFLEL-- 383 (490)
Q Consensus 311 ~~-~~g~~l~lgg~~l~vi~tPGH-T~g~i~l~~~~~~vLftGD~l~~~~~~~~~---~~~~~~~~~~~~SL~~L~~l-- 383 (490)
.+ ++|+.+.+||.+++++++||| |+||+|+|+|+.++||+||+++... +++. .....+...|.++|++++++
T Consensus 256 ~~~~dG~~l~lgg~~l~vi~tPGHhTpg~i~~~~p~~~vLftGD~v~~~~-~~i~~~~g~~~~d~~~~~~sL~~l~~l~~ 334 (658)
T 2cfu_A 256 LIEGEGEDLVLDGVPFTFQNTPGTESPAEMNIWLPRQKALLMAENVVGTL-HNLYTLRGAEVRDALGWSKYINQALHRFG 334 (658)
T ss_dssp EECTTEEEEEETTEEEEEEECTTSSSSSBEEEEETTTTEEECTTTSCSSC-CCSSCTTCCCCCCHHHHHHHHHHHHHHTG
T ss_pred EEecCceEEEECCEEEEEEeCCCCCCCCcEEEEECCCCEEEEeccccccC-CccccCCCcccCCHHHHHHHHHHHHHHhC
Confidence 45 589999999999999999999 9999999999999999999987542 2221 12235889999999998776
Q ss_pred -CCCEEEcCCCCCCCChHHHHHHHHHHHHHHHHHH----HHHHHcCCCCHHHHHHHh
Q 011237 384 -SPHALIPMHGRVNLWPKHMLCGYLKNRRAREAAI----LQAIENGVETLFDIVANV 435 (490)
Q Consensus 384 -~~~~ilPgHG~~~~~~~~~i~~~l~~~~~r~~~i----l~~l~~g~~T~~ei~~~~ 435 (490)
++++++||||.++.+ .+.+.+++++++++++.+ ++.+++ +.|.+||++.+
T Consensus 335 l~~~~v~PGHg~p~~g-~~~i~~~l~~~rd~l~~l~~~v~~~~~~-g~t~~ei~~~i 389 (658)
T 2cfu_A 335 RQAEVMFAVHNWPRWG-NAEIVEVLEKQRDLYGYLHDQTLHLANQ-GVTIGQVHNRL 389 (658)
T ss_dssp GGCSEEECSSSCCEES-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCTTTGGGTC
T ss_pred CCCcEEEeCCCCccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHh
Confidence 899999999998766 567888998888888644 445654 56899988876
No 14
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=99.95 E-value=1.9e-27 Score=226.97 Aligned_cols=186 Identities=17% Similarity=0.222 Sum_probs=143.2
Q ss_pred CCceecCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHhCC--CceE
Q 011237 182 LSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLP--RKLI 259 (490)
Q Consensus 182 ~~~~eva~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~~~--~~~~ 259 (490)
+.+++|.+|+|+++.. .+...|+|++.++ ++.+|||||......+.+.+.+++.+ ++++
T Consensus 3 ~~~~~l~~~v~~~~~~-----~~~~~n~~li~~~--------------~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ 63 (227)
T 3iog_A 3 MSLTQVSGPVYVVEDN-----YYVQENSMVYFGA--------------KGVTVVGATWTPDTARELHKLIKRVSRKPVLE 63 (227)
T ss_dssp EEEEEEETTEEEEEEC-----SSSCEEEEEEECS--------------SCEEEESCCSSHHHHHHHHHHHHTTCCSCEEE
T ss_pred cccEEecCCEEEEECC-----CcccCcEEEEEeC--------------CeEEEEECCCChHHHHHHHHHHHHhcCCCeEE
Confidence 5678999999999532 2334577777653 56899999987666667777776643 5669
Q ss_pred EEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccC-------------CC-----CCCceecCCCceEEEC
Q 011237 260 VFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKD-------------DW-----SLGYTSVSGSEDICVG 321 (490)
Q Consensus 260 IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~-------------~~-----~~~~~~~~~g~~l~lg 321 (490)
|++||.|.||+| |+..|++ ++++|++++.+...+.+. .+ ..+...+ ++ .+.++
T Consensus 64 ii~TH~H~DH~g-----g~~~l~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~l~ 134 (227)
T 3iog_A 64 VINTNYHTDRAG-----GNAYWKS--IGAKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVH-DG-DFTLQ 134 (227)
T ss_dssp EECSSSSHHHHT-----THHHHHH--TTCEEEEEHHHHHHHHHHHHHHHHHHHHHCTTSCCCCCCCCSEEE-SS-CEEET
T ss_pred EEeCCCchhhcC-----hHHHHhh--CCCeEEECHHHHHHHHHhhHHHHHHhhcCCCCCCCccccCCCEee-cC-eEEEc
Confidence 999999999999 9999986 689999999877655321 11 1112223 34 48888
Q ss_pred CEEEEEEeC-CCCCCCCeEEEECCCCEEEEccccCCCCccccccCCCCCHHHHHHHHHHHH--cCCCCEEEcCCCCCCCC
Q 011237 322 GQRLTVVFS-PGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFL--ELSPHALIPMHGRVNLW 398 (490)
Q Consensus 322 g~~l~vi~t-PGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~L~--~l~~~~ilPgHG~~~~~ 398 (490)
+.+++++++ ||||+||++++++++++|| ||.++....+.+ ...+..+|++||++|+ .+++++++||||.++.+
T Consensus 135 ~~~~~~~~~~pGHt~g~~~~~~~~~~~lf-gd~l~~~~~~~~---~~~~~~~~~~sl~~l~~~~l~~~~i~pgHg~~~~~ 210 (227)
T 3iog_A 135 EGKVRAFYAGPAHTPDGIFVYFPDEQVLY-GGCILKEKLGNL---SFADVKAYPQTLERLKAMKLPIKTVIGGHDSPLHG 210 (227)
T ss_dssp TTTEEEECCCCSSSSSCCEEEETTTTEEE-CGGGSCSSCCCC---TTCCTTHHHHHHHHHHHTCCCCSEEECSSSCCEEC
T ss_pred CcEEEEEecCCCCCCCcEEEEecCCCEEE-cccccccCCCCc---CcCCHHHHHHHHHHHHhccCCCCEEEeCCCCCcCC
Confidence 888999997 9999999999999999999 888876544433 3468899999999999 68999999999998865
Q ss_pred h
Q 011237 399 P 399 (490)
Q Consensus 399 ~ 399 (490)
.
T Consensus 211 ~ 211 (227)
T 3iog_A 211 P 211 (227)
T ss_dssp T
T ss_pred H
Confidence 4
No 15
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=99.95 E-value=3.6e-27 Score=225.99 Aligned_cols=187 Identities=18% Similarity=0.186 Sum_probs=143.6
Q ss_pred CCCceecCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHh--CCCce
Q 011237 181 TLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVAS--LPRKL 258 (490)
Q Consensus 181 ~~~~~eva~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~--~~~~~ 258 (490)
.+.+++|++|||+++.. ++...|+|++.++ ++.+|||||......+.+.+.+++ ..+++
T Consensus 5 ~~~~~~l~~~v~~i~~~-----~~~~~n~~li~~~--------------~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~ 65 (233)
T 3q6v_A 5 NLTLTHFKGPLYIVEDK-----EYVQENSMVYIGT--------------DGITIIGATWTPETAETLYKEIRKVSPLPIN 65 (233)
T ss_dssp CEEEEEEETTEEEEEEC-----SSSCEEEEEEECS--------------SCEEEESCCSSHHHHHHHHHHHHHHCCCCEE
T ss_pred cceeEEecCCEEEEeCC-----CcCCCcEEEEEeC--------------CeEEEEECCCCHHHHHHHHHHHHHhcCCCcE
Confidence 46778999999999532 2334577766653 568999999987655566666554 34567
Q ss_pred EEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccC------------------CCCCCceecCCCceEEE
Q 011237 259 IVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKD------------------DWSLGYTSVSGSEDICV 320 (490)
Q Consensus 259 ~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~------------------~~~~~~~~~~~g~~l~l 320 (490)
+|++||.|+||+| |+..|++ ++++|++++.+...+... ....+...+.++..+..
T Consensus 66 ~ii~TH~H~DH~g-----g~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (233)
T 3q6v_A 66 EVINTNYHTDRAG-----GNAYWKT--LGAKIVATQMTYDLQKSQWGSIVNFTRQGNNKYPNLEKSLPDTVFPGDFNLQN 138 (233)
T ss_dssp EEECSSSSHHHHT-----THHHHHH--TTCEEEEEHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCCCSEEESSCEEETT
T ss_pred EEEECCCChhhhC-----hHHHHhh--CCCEEEEcHHHHHHHHhhhHHHHHHHhccccccccccccCCCEEeCCCeEEcC
Confidence 9999999999999 9999984 689999999876655321 11123345666655543
Q ss_pred CCEEEEEEeC-CCCCCCCeEEEECCCCEEEEccccCCCCccccccCCCCCHHHHHHHHHHHHcC------CCCEEEcCCC
Q 011237 321 GGQRLTVVFS-PGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLEL------SPHALIPMHG 393 (490)
Q Consensus 321 gg~~l~vi~t-PGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~L~~l------~~~~ilPgHG 393 (490)
+ .++++++ ||||+||++++++++++|| ||.++....+.+ +.++..+|.+||++|+++ ++++++||||
T Consensus 139 ~--~~~v~~~~pGHt~g~~~~~~~~~~~lf-gD~~~~~~~~~~---~~~~~~~~~~sl~~l~~l~~~~~~~~~~i~pgHg 212 (233)
T 3q6v_A 139 G--SIRAMYLGEAHTKDGIFVYFPAERVLY-GNCILKENLGNM---SFANRTEYPKTLEKLKGLIEQGELKVDSIIAGHD 212 (233)
T ss_dssp T--TEEEECCCCSSSSSCCEEEETTTTEEE-CTTTSCSSCCCC---TTCCTTHHHHHHHHHHHHHHTTSSCCSEEECSSS
T ss_pred c--eEEEEECCCCCCcCcEEEEeccCCEEE-CceeccccCCCC---CcCCHHHHHHHHHHHHHhhhcccCCCeEEECCCC
Confidence 3 5889988 9999999999999999999 999886644432 567899999999999999 9999999999
Q ss_pred CCCCCh
Q 011237 394 RVNLWP 399 (490)
Q Consensus 394 ~~~~~~ 399 (490)
.++.+.
T Consensus 213 ~~~~~~ 218 (233)
T 3q6v_A 213 TPIHDV 218 (233)
T ss_dssp SSEECT
T ss_pred CccCCH
Confidence 987654
No 16
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=99.95 E-value=2.3e-27 Score=229.63 Aligned_cols=195 Identities=15% Similarity=0.190 Sum_probs=145.8
Q ss_pred CCCceecCCceEEEecCCCCC-CCcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHhC-C-Cc
Q 011237 181 TLSYQEYPPGVILVPMQSRTA-KPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASL-P-RK 257 (490)
Q Consensus 181 ~~~~~eva~Gv~~i~~~~~~~-~p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~~-~-~~ 257 (490)
.+.+++|+||||++....+.. .+....|+|++..+ ++.+|||||........+.+.+.+. + .+
T Consensus 21 ~~~~~~i~~~v~~~~~~~~~~~~g~~~~n~~li~~~--------------~~~iLID~G~~~~~~~~l~~~l~~~~~~~i 86 (243)
T 4hl2_A 21 DLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDG--------------GRVLVVDTAWTDDQTAQILNWIKQEINLPV 86 (243)
T ss_dssp TEEEEEEETTEEEEEEEEEETTTEEEEEEEEEEEET--------------TEEEEESCCSSHHHHHHHHHHHHHHTCCCE
T ss_pred ceEEEEeCCceEEEeeecccCCCCcccceEEEEEEC--------------CcEEEEECCCCCccHHHHHHHHHHhhCCCe
Confidence 677889999999984321110 01122455555432 4589999997655455565555543 2 46
Q ss_pred eEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCC--------CCceecCCCceEEECCEEEEEEe
Q 011237 258 LIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWS--------LGYTSVSGSEDICVGGQRLTVVF 329 (490)
Q Consensus 258 ~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~--------~~~~~~~~g~~l~lgg~~l~vi~ 329 (490)
++||+||.|.||+| |+..|.+. +++||+++.+...+...... .....+.+|+.+.+|+.++ +++
T Consensus 87 ~~vi~TH~H~DH~g-----g~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~v-~~~ 158 (243)
T 4hl2_A 87 ALAVVTHAHQDKMG-----GMDALHAA--GIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKV-FYP 158 (243)
T ss_dssp EEEEECSSSHHHHT-----THHHHHHT--TCEEEEEHHHHHHGGGTTCCCCSEEECBCTTSBBCGGGSTTCTTEEE-ECC
T ss_pred eEEEECCCCccccC-----CHHHHHhC--CCeEEECHHHHHHHhcccccccccccccccceEecCCCeEEECCEEE-EeC
Confidence 79999999999999 99999885 89999999998887653221 1234467899999999887 679
Q ss_pred CCCCCCCCeEEEECCCCEEEEccccCCCCccccccCCCCCHHHHHHHHHHHHc-C-CCCEEEcCCCCCCC
Q 011237 330 SPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLE-L-SPHALIPMHGRVNL 397 (490)
Q Consensus 330 tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~L~~-l-~~~~ilPgHG~~~~ 397 (490)
+||||+||+++++++.++||+||+++....+.+...+.++..+|++||++++. + +..+++||||++..
T Consensus 159 ~pGHt~g~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~d~~~~~~sl~~l~~~l~~~~~v~pgHg~~~~ 228 (243)
T 4hl2_A 159 GPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDS 228 (243)
T ss_dssp CSSSSTTCCEEEETTTTEEECTTTCCCTTCSCCCCCTTCCTTTHHHHHHHHHHHSTTCCEEECSSSCCBC
T ss_pred CCCCCcCCEEEEEcCCCEEEEcceeeeccCCCcCCCCCCCHHHHHHHHHHHHhhCCCceEEEeCCCCcCc
Confidence 99999999999999999999999998533333333357789999999999986 4 57789999999875
No 17
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
Probab=99.95 E-value=4.7e-27 Score=225.62 Aligned_cols=194 Identities=18% Similarity=0.195 Sum_probs=143.9
Q ss_pred CCCCceecCCceEEEecCCCCCC-CcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHhCC-Cc
Q 011237 180 PTLSYQEYPPGVILVPMQSRTAK-PFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLP-RK 257 (490)
Q Consensus 180 ~~~~~~eva~Gv~~i~~~~~~~~-p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~~~-~~ 257 (490)
..+.+.+|.+|||++....+... .....|+|++..+ ++.+|||||......+.+.+.+++.+ ++
T Consensus 5 ~~~~~~~i~~~v~~~~~~~~~~g~~~~~~n~~li~~~--------------~~~iliD~g~~~~~~~~~~~~l~~~g~~i 70 (228)
T 1jjt_A 5 PDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVN--------------AEAYLIDTPFTAKDTEKLVTWFVERGYKI 70 (228)
T ss_dssp CCCEEEEEETTEEEEEEEEECTTSCEEEEEEEEEEET--------------TEEEEESCCSSHHHHHHHHHHHHTTTCEE
T ss_pred CCceEEEecCCeEEEEeecccCCCccccceEEEEEEC--------------CcEEEEeCCCChhhHHHHHHHHHHcCCCe
Confidence 35678899999999954311000 0112344444332 45899999987544456666666654 45
Q ss_pred eEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCCCceecCCCceEEECCEEEEEE-eCCCCCCC
Q 011237 258 LIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVV-FSPGHTDG 336 (490)
Q Consensus 258 ~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~~~~~~~g~~l~lgg~~l~vi-~tPGHT~g 336 (490)
++|++||.|.||+| |+..|.+. +++|++++.+...+.......+...+ .|+.+.+++.+++++ ++||||+|
T Consensus 71 ~~ii~TH~H~DH~g-----g~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~-~g~~~~l~~~~i~~~~~~pGHt~g 142 (228)
T 1jjt_A 71 KGSISSHFHSDSTG-----GIEWLNSR--SIPTYASELTNELLKKDGKVQATNSF-SGVNYWLVKNKIEVFYPGPGHTPD 142 (228)
T ss_dssp EEEECSSSSHHHHT-----THHHHHHT--TCCEEEEHHHHHHHHHTTCCCCSEEE-CSSCCEEETTTEEEECCCCSSSTT
T ss_pred eEEEeCCCChhhhc-----cHHHHHhC--CCEEEEChHHHHHHHhcCCcCccccc-cCcceEecCceEEEEecCCCCCCC
Confidence 69999999999999 99999873 89999999988877543322222233 366777888889998 89999999
Q ss_pred CeEEEECCCCEEEEccccCCCCccccccCCCCCHHHHHHHHHHHHcC--CCCEEEcCCCCCCCC
Q 011237 337 HVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLEL--SPHALIPMHGRVNLW 398 (490)
Q Consensus 337 ~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~L~~l--~~~~ilPgHG~~~~~ 398 (490)
|++++++++++||+||+++....+.+ ...++.+|++||++++++ +.+.++||||.+...
T Consensus 143 ~~~~~~~~~~~lf~GD~~~~~~~~~~---~~~d~~~~~~sl~~l~~~~~~~~~i~pgHg~~~~~ 203 (228)
T 1jjt_A 143 NVVVWLPERKILFGGCFIKPYGLGNL---GDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDA 203 (228)
T ss_dssp CCEEEETTTTEEEEETTCCTTCCCCC---TTCCTTTHHHHHHHHHHHTTTCSEEEESSSCCBCT
T ss_pred cEEEEECCCcEEEEeccccccccCcc---CccCHHHHHHHHHHHHhhcCCCCEEEcCCCCcCCH
Confidence 99999999999999999875443322 356889999999999998 889999999998763
No 18
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=99.90 E-value=5.2e-29 Score=273.32 Aligned_cols=280 Identities=17% Similarity=0.164 Sum_probs=195.5
Q ss_pred EEEEeEcCCCc-cccccccccCCHHHHHHHHHccCCCCCccChhhhhhhhchhhhccccCCCCCCCceecCCceEEEecC
Q 011237 119 VYIMGKLLDGN-QILQEGCKWMSTQSCINCLAEVKPSTDRVGPLVVIGLLNDLVQWRKWKVPPTLSYQEYPPGVILVPMQ 197 (490)
Q Consensus 119 ~f~~a~lp~~q-~~e~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~ag~~~~~~~~~~~~~~~~~~~~eva~Gv~~i~~~ 197 (490)
|=|+|. +.++ ..+.....|-.. ..+.+... ..+..+=| +|-.- . ..+....+.||+||||+++
T Consensus 65 rg~i~~-~~~~~~~~~g~~~~~~~--~~~f~~~~-~~p~tvnp----slwr~---~---~~~~~~~l~eV~~gVy~i~-- 128 (668)
T 2yhe_A 65 RGLIAP-FSGQIKNAEGQVVWDMG--AYQFLNDK-DAADTVNP----SLWRQ---A---QLNNIAGLFEVMPKLYQVR-- 128 (668)
Confidence 446666 7777 455666677542 23333332 12333333 22221 1 1233456789999999983
Q ss_pred CCCCCCcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHh---CCCceEEEecCCCccccCchh
Q 011237 198 SRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVAS---LPRKLIVFVTHHHRDHVDGEF 274 (490)
Q Consensus 198 ~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~---~~~~~~IviTH~H~DH~G~a~ 274 (490)
+....|+|+|.++ ++++|||||......+.+.+.+.+ ...+++||+||.|+||+|
T Consensus 129 -----g~~~~N~~lI~~~--------------~~~iLIDtG~~~~~a~~~l~~i~~~~~~~~I~~IilTH~H~DH~g--- 186 (668)
T 2yhe_A 129 -----GLDPANMTIIEGD--------------SGLVLIDTLTTAETARAALDLYFQHRPKKPIVAVVYSHSHIDHFG--- 186 (668)
Confidence 2344677777653 458999999876544444444433 234569999999999999
Q ss_pred hccHHHHHHh----CCCCEEEeChhhHHhh--c----------c--CCC-----------------------C-----CC
Q 011237 275 IRGLSIIQKC----NPDAILLAHENTMRRI--G----------K--DDW-----------------------S-----LG 308 (490)
Q Consensus 275 ~~G~~~l~~~----~p~a~I~~~~~~~~~l--~----------~--~~~-----------------------~-----~~ 308 (490)
|+..|.+. .++++||+|+.+.+.. . . ..+ . .+
T Consensus 187 --G~~~l~~~~~~~~~~a~I~a~~~~~e~~~~e~~~~g~~~~~r~~~~~G~~lp~~~~~~~~~~l~~~~~~~~~~~~~~P 264 (668)
T 2yhe_A 187 --GARGIIDEADVKAGKVKVFAPSGFMEHAVSENILAGTAMARRGQYQSGVMVPRGAQAQVDSGLFKTTATNATNTLVAP 264 (668)
Confidence 99999863 4689999988752210 0 0 000 0 01
Q ss_pred ce-ecCCCceEEECCEEEEEEeCCC-CCCCCeEEEECCCCEEEEccccCCCCccccc---cCCCCCHHHHHHHHHHHHcC
Q 011237 309 YT-SVSGSEDICVGGQRLTVVFSPG-HTDGHVALLHASTNSLIVGDHCVGQGSAVLD---ITAGGNMTDYFQSTYKFLEL 383 (490)
Q Consensus 309 ~~-~~~~g~~l~lgg~~l~vi~tPG-HT~g~i~l~~~~~~vLftGD~l~~~~~~~~~---~~~~~~~~~~~~SL~~L~~l 383 (490)
.. .+++|+.+.+||.+++++++|| ||+||+|+|+|+.++||+||+++.... ++. .....++..|++||++++++
T Consensus 265 ~~~~~~dg~~l~lgg~~l~vi~tPG~Htpg~i~~~~p~~~vLftGD~~~~~~~-ni~~~~g~~~~d~~~w~~SL~~l~~l 343 (668)
T 2yhe_A 265 NVLIEKPYERHTVDGVELEFQLTLGSEAPSDMNIYLPQFKVLNTADNAPPAMH-NLLTPRGAEVRDAKAWAGYIDASLEK 343 (668)
Confidence 11 2358899999999999999999 999999999999999999999885432 221 11235888999999999998
Q ss_pred ---CCCEEEcCCCCCCCChHHHHHHHHHHHHHHH----HHHHHHHHcCCCCHHHHHHHhhcCCCcc
Q 011237 384 ---SPHALIPMHGRVNLWPKHMLCGYLKNRRARE----AAILQAIENGVETLFDIVANVYSEVPRS 442 (490)
Q Consensus 384 ---~~~~ilPgHG~~~~~~~~~i~~~l~~~~~r~----~~il~~l~~g~~T~~ei~~~~~~~l~~~ 442 (490)
++++++||||.++.+ .+.+.++++++++++ +++++.+++| .|++||++.+| ++|+.
T Consensus 344 ~~~~~~~vvPGHg~p~~g-~~~i~~~l~~~rd~l~~l~~qvl~~l~~G-~t~~EI~~~iy-~lp~~ 406 (668)
T 2yhe_A 344 YGDRTDVLIQQHNWPVWG-GDKVRTYLADQRDMYAFLNNRALNLMNKG-LTLHEIAAEVS-KLPGE 406 (668)
Confidence 899999999998766 567888888888888 6777788776 69999999998 88754
No 19
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A
Probab=99.94 E-value=8.6e-26 Score=224.09 Aligned_cols=190 Identities=19% Similarity=0.183 Sum_probs=143.4
Q ss_pred CCCceecCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHhCC----C
Q 011237 181 TLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLP----R 256 (490)
Q Consensus 181 ~~~~~eva~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~~~----~ 256 (490)
.+...++.+|||++. ....|+|+|..+ ++.+|||||.... ...+.+.+.+.+ +
T Consensus 37 ~~~~~~i~~~v~~~~--------~~~~n~~li~~~--------------~~~iLID~G~~~~-~~~~~~~l~~~g~~~~~ 93 (294)
T 3m8t_A 37 PFEPFQLIDNIYYVG--------TDGIAVYVIKTS--------------QGLILMDTAMPQS-TGMIKDNIAKLGFKVAD 93 (294)
T ss_dssp CCCCEEEETTEEECC--------CSSSCCEEEEET--------------TEEEEECCCCGGG-HHHHHHHHHHTTCCGGG
T ss_pred CCCCEEEeCCEEEeC--------CCCeEEEEEEEC--------------CceEEEECCCchh-HHHHHHHHHHcCCCHHH
Confidence 345689999999982 222466666553 4589999998533 234555555443 4
Q ss_pred ceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCC-----------C--CCCceecCCCceEEECCE
Q 011237 257 KLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDD-----------W--SLGYTSVSGSEDICVGGQ 323 (490)
Q Consensus 257 ~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~-----------~--~~~~~~~~~g~~l~lgg~ 323 (490)
+++||+||.|.||+| |+..|.+. ++++||+++.+...+.... + ......+.+|+.+.+|+.
T Consensus 94 i~~ii~TH~H~DH~g-----g~~~l~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ 167 (294)
T 3m8t_A 94 IKLILNTHAHLDHTG-----GFAEIKKE-TGAQLVAGERDKPLLEGGYYPGDEKNEDLAFPAVKVDRAVKEGDRVTLGDT 167 (294)
T ss_dssp EEEEECSCCCHHHHT-----THHHHHHH-HCCEEEEEGGGHHHHHHTCBTTBTTCGGGCCCCCCCSEEECTTCEEEETTE
T ss_pred CcEEEECCCCccccc-----cHHHHhhc-cCCEEEEChHHHHHHhcccccCccccccCCCCCCCCceEeCCCCEEEeCCE
Confidence 679999999999999 99999887 5899999998887665431 0 112456889999999999
Q ss_pred EEEEEeCCCCCCCCeEEEECC--C----CEEEEccccCCCCccccccCCCCCHHHHHHHHHHHHcCCCCEEEcCCCCCCC
Q 011237 324 RLTVVFSPGHTDGHVALLHAS--T----NSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHALIPMHGRVNL 397 (490)
Q Consensus 324 ~l~vi~tPGHT~g~i~l~~~~--~----~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~L~~l~~~~ilPgHG~~~~ 397 (490)
+++++++||||+||++++++. . ++||+||+++......-......++.+|.+||++++++++++++||||.++.
T Consensus 168 ~i~~~~~pgHt~g~~~~~~~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~v~pgHg~~~~ 247 (294)
T 3m8t_A 168 TLTAHATPGHSPGCTSWEMTVKDGKEDREVLFFCSGTVALNRLVGQPTYAGIVDDYRATFAKAKAMKIDVLLGPHPEVYG 247 (294)
T ss_dssp EEEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCCCCTTCCCSSSCSSTTHHHHHHHHHHHHHHSCCSEEECSSGGGTT
T ss_pred EEEEEeCCCCCccCEEEEEEccCCCccceEEEEcCccCCCCcCcCCCCCCchHHHHHHHHHHHHCCCCCEEEcCCCChhc
Confidence 999999999999999999862 3 5999999986433211111123568999999999999999999999999876
Q ss_pred Ch
Q 011237 398 WP 399 (490)
Q Consensus 398 ~~ 399 (490)
..
T Consensus 248 ~~ 249 (294)
T 3m8t_A 248 MQ 249 (294)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 20
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A
Probab=99.94 E-value=4.5e-26 Score=223.02 Aligned_cols=151 Identities=20% Similarity=0.257 Sum_probs=122.3
Q ss_pred CeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCCCce
Q 011237 231 EALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYT 310 (490)
Q Consensus 231 ~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~~~ 310 (490)
+++|||||......+.+.+. -..+++|++||.|+||+| |+..|++.+ +++||+++.+...+.. ...
T Consensus 24 ~~~lID~g~~~~i~~~l~~~---g~~i~~Il~TH~H~DH~g-----g~~~l~~~~-~~~v~~~~~~~~~~~~-----~~~ 89 (254)
T 1xm8_A 24 TVGVVDPSEAEPIIDSLKRS---GRNLTYILNTHHHYDHTG-----GNLELKDRY-GAKVIGSAMDKDRIPG-----IDM 89 (254)
T ss_dssp CEEEECCSSHHHHHHHHHHH---TCCCCEEECSSCCHHHHT-----THHHHHHHH-CCEEEEEGGGGGGSTT-----EEE
T ss_pred EEEEEeCCCHHHHHHHHHHc---CCCccEEEECCCCCcccc-----cHHHHHHHc-CCeEEEchhhhhcCCC-----Cce
Confidence 58999999543333333332 125679999999999999 999998875 6999999887665532 345
Q ss_pred ecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCCCEEEEccccCCCCccccccCCCCCHHHHHHHHHHHHcCCCC-EEE
Q 011237 311 SVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPH-ALI 389 (490)
Q Consensus 311 ~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~L~~l~~~-~il 389 (490)
.+.+|+.+.+|+.+++++++||||+||+|++++++++||+||+++..+... .+.++..+|++||++|.+++.+ .|+
T Consensus 90 ~~~~g~~~~lg~~~~~vi~tPGHt~g~~~~~~~~~~~lftGD~l~~~~~g~---~~~~~~~~~~~Sl~~l~~l~~~~~v~ 166 (254)
T 1xm8_A 90 ALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSRAIFTGDTMFSLSCGK---LFEGTPKQMLASLQKITSLPDDTSIY 166 (254)
T ss_dssp EECTTCEEEETTEEEEEEECCSSSSSCEEEEEGGGTEEEEETTEETTEECC---CSSSCHHHHHHHHHHHHTSCTTCEEE
T ss_pred eeCCCCEEEECCEEEEEEECCCCCCCcEEEEECCCCEEEEcCccccCCCCC---CCCCCHHHHHHHHHHHHccCCCcEEE
Confidence 788999999999999999999999999999999889999999998654332 2567999999999999999887 699
Q ss_pred cCCCCCCCC
Q 011237 390 PMHGRVNLW 398 (490)
Q Consensus 390 PgHG~~~~~ 398 (490)
||||++..+
T Consensus 167 pgHg~~~~~ 175 (254)
T 1xm8_A 167 CGHEYTLSN 175 (254)
T ss_dssp ESBCCHHHH
T ss_pred eCCcchhcc
Confidence 999987543
No 21
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2
Probab=99.93 E-value=5.6e-26 Score=222.90 Aligned_cols=185 Identities=24% Similarity=0.274 Sum_probs=138.3
Q ss_pred cceEEEec---CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHH
Q 011237 222 GNHRFVAQ---GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMR 298 (490)
Q Consensus 222 ~~~~~li~---g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~ 298 (490)
.|++|++. ++.+|||||......+.+.+. .. .+++|++||.|.||+| |+..|++.+++++||+++.+.
T Consensus 18 ~n~~yli~~~~~~~vlID~G~~~~i~~~l~~~--g~-~i~~Il~TH~H~DH~g-----g~~~l~~~~~~~~v~~~~~~~- 88 (258)
T 2qed_A 18 DNYIWVLTNDEGRCVIVDPGEAAPVLKAIAEH--KW-MPEAIFLTHHHHDHVG-----GVKELLQHFPQMTVYGPAETQ- 88 (258)
T ss_dssp TEEEEEEECTTSEEEEECCSCHHHHHHHHHHH--TC-EEEEEECCSCCHHHHT-----THHHHHHHCTTCEEEECGGGG-
T ss_pred ceEEEEEEECCCcEEEEeCCCcHHHHHHHHHc--CC-CCCEEEeCCCCccccC-----CHHHHHHHCCCCEEEeccccc-
Confidence 34566663 348999999643333333322 12 4669999999999999 999999988779999997652
Q ss_pred hhccCCCCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCCCEEEEccccCCCCccccccCCCCCHHHHHHHHH
Q 011237 299 RIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTY 378 (490)
Q Consensus 299 ~l~~~~~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~ 378 (490)
+ +.....+.+|+.+++|+.+++++++||||+||+|++ ++++||+||+++..+.+.. +.++..+|++||+
T Consensus 89 -~-----~~~~~~~~~g~~~~~g~~~~~vi~tPGHt~g~~~~~--~~~~lftGD~l~~~~~g~~---~~~~~~~~~~sl~ 157 (258)
T 2qed_A 89 -D-----KGATHLVGDGDTIRVLGEKFTLFATPGHTLGHVCYF--SRPYLFCGDTLFSGGCGRL---FEGTPSQMYQSLM 157 (258)
T ss_dssp -G-----GTCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEE--ETTEEEEETTEETTEECCC---SSSCHHHHHHHHH
T ss_pred -C-----CCCcEEeCCCCEEEECCcEEEEEECCCCCCCCeEEE--cCCEEEECCCCCCCCcCCC---CCCCHHHHHHHHH
Confidence 1 124567899999999999999999999999999999 5799999999986544333 4679999999999
Q ss_pred HHHcCCCC-EEEcCCCCCCCChHH--HHHHHHHHHHHHHHHHHHHHHcCCC
Q 011237 379 KFLELSPH-ALIPMHGRVNLWPKH--MLCGYLKNRRAREAAILQAIENGVE 426 (490)
Q Consensus 379 ~L~~l~~~-~ilPgHG~~~~~~~~--~i~~~l~~~~~r~~~il~~l~~g~~ 426 (490)
+|.+++.+ .++||||++..+..- .+....++..++.+++.+++++|..
T Consensus 158 ~l~~l~~~~~v~pgHg~~~~~~~f~~~~~p~~~~l~~~~~~v~~~~~~g~~ 208 (258)
T 2qed_A 158 KINSLPDDTLICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQM 208 (258)
T ss_dssp HHHTSCTTCEEEESBCCHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCCCeEEECCCcchhhchhHhhhcCcccHHHHHHHHHHHHHHHcCCC
Confidence 99999998 599999986533211 1111234556666678888777643
No 22
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.93 E-value=5.3e-25 Score=229.35 Aligned_cols=224 Identities=16% Similarity=0.212 Sum_probs=157.5
Q ss_pred hhhhccccCCCCCCCceecC--CceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEec--CCeEEEcCCCCChHH
Q 011237 169 DLVQWRKWKVPPTLSYQEYP--PGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQ--GEALIVDPGCRSEFH 244 (490)
Q Consensus 169 ~~~~~~~~~~~~~~~~~eva--~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~--g~~iLIDtG~~~~~~ 244 (490)
++.+.....|| ...+++|. ||+||++...+..+-| .+.|-+ +.|...|+|+|. ++.+|||||.... .
T Consensus 4 ~~~~~~~~~m~-~~~~~ki~d~p~iy~vg~~d~~~~~F--e~~~~~-----~~GtsyNsYLI~~~~~~vLIDtg~~~~-~ 74 (410)
T 4dik_A 4 DKIHHHHHHMP-KIWTERIFDDPEIYVLRIDDDRIRYF--EAVWEI-----PEGISYNAYLVKLNGANVLIDGWKGNY-A 74 (410)
T ss_dssp -----CCSSCC-CEEEEEEETTTEEEEEEEEECSCCEE--TTTEEC-----TTCEEEEEEEEECSSCEEEECCCCGGG-H
T ss_pred cccccccccCC-cceEEEEecCCCEEEEeeecCCCcce--eeeeeC-----CCceEEEEEEEEECCeEEEEeCCCcch-H
Confidence 34445555665 55567775 4799998765543333 344433 234556888884 3489999996543 3
Q ss_pred HHHHHHHHhC---CCceEEEecCCCccccCchhhccHHHHHHh-CCCCEEEeChhhHHhhccCCCCCCceecCCCceEEE
Q 011237 245 EELLKVVASL---PRKLIVFVTHHHRDHVDGEFIRGLSIIQKC-NPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV 320 (490)
Q Consensus 245 ~~L~~~~~~~---~~~~~IviTH~H~DH~G~a~~~G~~~l~~~-~p~a~I~~~~~~~~~l~~~~~~~~~~~~~~g~~l~l 320 (490)
+.+.+.+++. .++++||+||.|+||+| |+..+.+. .|+++|++++.....+........+..+++|+.+++
T Consensus 75 ~~~l~~l~~~i~~~~IdyIi~TH~h~DH~G-----~l~~l~~~~~~~~~v~~s~~~~~~l~~~~~~~~~~~v~dGd~l~l 149 (410)
T 4dik_A 75 KEFIDALSKIVDPKEITHIIVNHTEPDASG-----SLPATLKTIGHDVEIIASNFGKRLLEGFYGIKDVTVVKDGEEREI 149 (410)
T ss_dssp HHHHHHHTTTSCGGGCCEEECSCCCHHHHT-----THHHHHHHHCSCCEEEECHHHHHHHHHHHCCCCEEECCTTCEEEE
T ss_pred HHHHHHHHHhcCcccCCEEEeCcCCcchhh-----hHHHHHHHcCCCCEEEeCHHHHHHHHhhcCccceeEecCCCEEee
Confidence 3444444432 35679999999999999 99988775 478999999988777654222335678999999999
Q ss_pred CCEEEEEEeCCC-CCCCCeEEEECCCCEEEEccccCCCCcccccc-CCCC-------------------CHHHHHHHHHH
Q 011237 321 GGQRLTVVFSPG-HTDGHVALLHASTNSLIVGDHCVGQGSAVLDI-TAGG-------------------NMTDYFQSTYK 379 (490)
Q Consensus 321 gg~~l~vi~tPG-HT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~-~~~~-------------------~~~~~~~SL~~ 379 (490)
|+.++++++||| |+||++|+|. +++|||||++.......... .... .-..++++|++
T Consensus 150 G~~~L~~i~tPg~H~p~~~~~y~--~~iLFsgD~fg~h~~~~~~~d~~~~~~e~~~~~~~~yy~~i~~p~~~~v~~~L~k 227 (410)
T 4dik_A 150 GGKKFKFVMTPWLHWPDTMVTYL--DGILFSCDVGGGYLLPEILDDSNESVVERYLPHVTKYIVTVIGHYKNYILEGAEK 227 (410)
T ss_dssp TTEEEEEEECTTSSSTTCEEEEE--TTEEEEETTTCCSSCCSSSBTTCHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHH
T ss_pred cceEEEEecCCCCCCCCCeeEEe--CCceEccccccccccCccccccchhhHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 999999999999 9999999997 58999999975444332110 0000 11234678999
Q ss_pred HHcCCCCEEEcCCCCCCC-ChHHHHHHHHH
Q 011237 380 FLELSPHALIPMHGRVNL-WPKHMLCGYLK 408 (490)
Q Consensus 380 L~~l~~~~ilPgHG~~~~-~~~~~i~~~l~ 408 (490)
|++|++++|+||||++++ ++.+.+..|.+
T Consensus 228 l~~Ldi~~I~P~HGpi~r~~~~~ii~~Y~~ 257 (410)
T 4dik_A 228 LSSLKIKALLPGHGLIWKKDPQRLLNHYVS 257 (410)
T ss_dssp HHTSCCSEEEESSSCBBSSCHHHHHHHHHH
T ss_pred HhCCCCCEEecCCcchhhcCHHHHHHHHHH
Confidence 999999999999999874 56666777765
No 23
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A*
Probab=99.93 E-value=2.2e-25 Score=224.45 Aligned_cols=182 Identities=18% Similarity=0.175 Sum_probs=138.2
Q ss_pred CCeEEEcCCCCCh-HHHHHHHHHHhC------CCceEEEecCCCccccCchhhccHHHHHHhCC------CCEEEeChhh
Q 011237 230 GEALIVDPGCRSE-FHEELLKVVASL------PRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNP------DAILLAHENT 296 (490)
Q Consensus 230 g~~iLIDtG~~~~-~~~~L~~~~~~~------~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p------~a~I~~~~~~ 296 (490)
++.+|||||.... ..+.+.+.+.+. .++++||+||.|+||+| |+..|++.++ +++||+++.+
T Consensus 51 ~~~ilID~G~~~~~~~~~l~~~l~~~g~~~~~~~i~~IllTH~H~DH~g-----g~~~l~~~~~~~~~~~~~~v~~~~~~ 125 (311)
T 2p18_A 51 HTLAAVDVNADYKPILTYIEEHLKQQGNADVTYTFSTILSTHKHWDHSG-----GNAKLKAELEAMNSTVPVVVVGGAND 125 (311)
T ss_dssp TEEEEESCCSCCHHHHHHHHHTC--------CCEEEEEEESSSSHHHHT-----THHHHHHHHHSCC--CCCEEEEEGGG
T ss_pred CcEEEEeCCCChHHHHHHHHHHHhhcCCCCCCCCccEEEeCCCCccccC-----CHHHHHHhhhhcccCCCCEEEEechh
Confidence 3489999975543 223333321111 34569999999999999 9999988765 7899998765
Q ss_pred HHhhccCCCCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEE--CC---C-CEEEEccccCCCCccccccCCCCCH
Q 011237 297 MRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLH--AS---T-NSLIVGDHCVGQGSAVLDITAGGNM 370 (490)
Q Consensus 297 ~~~l~~~~~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~--~~---~-~vLftGD~l~~~~~~~~~~~~~~~~ 370 (490)
. .+.....+.+|+.+.+|+.+++++++||||+||+||++ ++ . ++||+||+++...... .+.++.
T Consensus 126 ~-------~~~~~~~l~~g~~l~lg~~~l~vi~tPGHT~g~i~~~~~~~~~~~~~~~lftGD~l~~~~~g~---~~~~~~ 195 (311)
T 2p18_A 126 S-------IPAVTKPVREGDRVQVGDLSVEVIDAPCHTRGHVLYKVQHPQHPNDGVALFTGDTMFIAGIGA---FFEGDE 195 (311)
T ss_dssp T-------CTTCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEECTTCGGGCEEEEEETTEETTEECC---CTTSCH
T ss_pred c-------CCCCceEeCCCCEEEECCeEEEEEECCCCCcccEEEEEecCCcCCcCCEEEEcCccccCCcCC---CCCCCH
Confidence 2 12345678999999999999999999999999999998 56 6 8999999998654332 246799
Q ss_pred HHHHHHHHHHHcC--------CCC-EEEcCCCCCCCChHHHHH-------HHHHHHHHHHHHHHHHHHcCCC
Q 011237 371 TDYFQSTYKFLEL--------SPH-ALIPMHGRVNLWPKHMLC-------GYLKNRRAREAAILQAIENGVE 426 (490)
Q Consensus 371 ~~~~~SL~~L~~l--------~~~-~ilPgHG~~~~~~~~~i~-------~~l~~~~~r~~~il~~l~~g~~ 426 (490)
.+|++||++|.++ +.+ .|+||||.+..+...... ++.++.+++++++.+.+++|..
T Consensus 196 ~~~~~Sl~kl~~l~~~~~~~~~~~~~v~pgHg~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~v~~~~~~g~~ 267 (311)
T 2p18_A 196 KDMCRAMEKVYHIHKGNDYALDKVTFIFPGHEYTSGFMTFSEKTFPDRASDDLAFIQAQRAKYAAAVKTGDP 267 (311)
T ss_dssp HHHHHHHHHHHTTTGGGTTGGGGGEEEEESBCCHHHHHHHHHHHCSCTTSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhhcccccCCCCeEEEeCCCchhhhhHHHHHhCCCccchhhHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999 776 599999987654332222 2477788888899999988754
No 24
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.93 E-value=5.8e-25 Score=228.15 Aligned_cols=214 Identities=15% Similarity=0.178 Sum_probs=151.7
Q ss_pred CCceecCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEec--CCeEEEcCCCCChH---HHHHHHHHH--hC
Q 011237 182 LSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQ--GEALIVDPGCRSEF---HEELLKVVA--SL 254 (490)
Q Consensus 182 ~~~~eva~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~--g~~iLIDtG~~~~~---~~~L~~~~~--~~ 254 (490)
+.+.||+||||+++.+......| .+ + + + .+..+|+|++. ++.+|||||..... .+.+.+... ..
T Consensus 3 ~~~~~i~~~v~~~~~~~~~~~~f--~~-~-~-~----~g~~~n~~li~~~~~~iLiD~g~~~~~~~~~~~l~~~~~~~~~ 73 (404)
T 2ohh_A 3 AAAKRISDGVYWTGVLDWDLRNY--HG-Y-T-L----QGTTYNAYLVCGDEGVALIDNSYPGTFDELMARVEDALQQVGM 73 (404)
T ss_dssp CCCEEEETTEEECCEEETTCCEE--TT-E-E-C----SCEEECCEEEECSSCEEEECCCCTTCHHHHHHHHHHHHHHHTC
T ss_pred ceeEEeeCCeEEEEeccCCcccc--ce-e-c-C----CCCeEEEEEEEeCCcEEEEeCCCCccHHHHHHHHHHHhccCCc
Confidence 45689999999996543221122 11 2 1 1 12234555553 34899999986332 233333310 34
Q ss_pred CCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccC-CC--CCCceecCCCceEEECCEEEEEEeCC
Q 011237 255 PRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKD-DW--SLGYTSVSGSEDICVGGQRLTVVFSP 331 (490)
Q Consensus 255 ~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~-~~--~~~~~~~~~g~~l~lgg~~l~vi~tP 331 (490)
.++++|++||.|.||+| |+..+.+.+|+++|++++.+...+... .. ......+.+|+.+++|+.+++++++|
T Consensus 74 ~~i~~ii~TH~H~DH~g-----g~~~l~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~p 148 (404)
T 2ohh_A 74 ERVDYIIQNHVEKDHSG-----VLVELHRRFPEAPIYCTEVAVKGLLKHYPSLREAEFMTVKTGDVLDLGGKTLTFLETP 148 (404)
T ss_dssp CCCCEEECSCCSHHHHT-----THHHHHHHSTTCCEEECHHHHHHHHHHCGGGGGSCEEECCTTCEEECSSCEEEEEECT
T ss_pred cCCCEEEeCCCCCcccc-----hHHHHHHHCCCCEEEECHHHHHHHHHHhcccccCCceEcCCCCEEEECCEEEEEEeCC
Confidence 67789999999999999 999999988999999999887765431 11 12456789999999999999999999
Q ss_pred -CCCCCCeEEEECCCCEEEEccccCCCC--ccccccC-C----------------CCCHHHHHHHHHHHHcCCC----CE
Q 011237 332 -GHTDGHVALLHASTNSLIVGDHCVGQG--SAVLDIT-A----------------GGNMTDYFQSTYKFLELSP----HA 387 (490)
Q Consensus 332 -GHT~g~i~l~~~~~~vLftGD~l~~~~--~~~~~~~-~----------------~~~~~~~~~SL~~L~~l~~----~~ 387 (490)
|||+||+++++++.++||+||++.... ...+... + ......+++||++|+++++ ++
T Consensus 149 ~gH~~~~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~~~~~ 228 (404)
T 2ohh_A 149 LLHWPDSMFTLLDEDGILFSNDAFGQHLCCPQRLDREIPEYILMDAARKFYANLITPLSKLVLKKFDEVKELGLLERIQM 228 (404)
T ss_dssp TSSSTTCEEEEEETTTEEECTTTTCCCCCCSCCBGGGSCHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHTTCGGGCSE
T ss_pred CCCCCCceEEEECCCcEEEecCccccCcCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccE
Confidence 999999999999999999999983221 1112110 0 0122456899999999999 89
Q ss_pred EEcCCCCCCCChHHHHHHHHHH
Q 011237 388 LIPMHGRVNLWPKHMLCGYLKN 409 (490)
Q Consensus 388 ilPgHG~~~~~~~~~i~~~l~~ 409 (490)
|+||||.+..++.+.+..|++.
T Consensus 229 i~pgHg~~~~~~~~~~~~~~~~ 250 (404)
T 2ohh_A 229 IAPSHGQIWTDPMKIIEAYTGW 250 (404)
T ss_dssp EECSSSCBBSSHHHHHHHHHHH
T ss_pred EecCCCccccCHHHHHHHHHHH
Confidence 9999999987766666666654
No 25
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Probab=99.93 E-value=1.8e-24 Score=215.15 Aligned_cols=212 Identities=17% Similarity=0.197 Sum_probs=153.0
Q ss_pred CCceecCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHhCC----Cc
Q 011237 182 LSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLP----RK 257 (490)
Q Consensus 182 ~~~~eva~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~~~----~~ 257 (490)
....+|.+|+|++. ....|+++|..+ ++.+|||||.... .+.+.+.+.+.+ ++
T Consensus 41 ~~~~~i~~~~~~vg--------~~~~~~~li~~~--------------~~~iLiD~G~~~~-~~~~~~~l~~~g~~~~~i 97 (303)
T 4ax1_B 41 AMPLKVYGNTWYVG--------TCGISALLVTSD--------------AGHILVDAATPQA-GPQILANIRALGFRPEDV 97 (303)
T ss_dssp CCCEEEETTEEECS--------BSSSCCEEECCT--------------TCEEEECCBSTTC-HHHHHHHHHHTTCCGGGE
T ss_pred CCCeEEECCceEeC--------CCCceEEEEEeC--------------CcEEEEECCCccc-HHHHHHHHHHcCCCHHHC
Confidence 44567788888862 122466666543 5689999997543 234455555543 36
Q ss_pred eEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCC---------------CCCCceecCCCceEEECC
Q 011237 258 LIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDD---------------WSLGYTSVSGSEDICVGG 322 (490)
Q Consensus 258 ~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~---------------~~~~~~~~~~g~~l~lgg 322 (490)
++|++||.|.||+| |+..|.+.+ +++||+++.+...+.... .......+.+|+.+++|+
T Consensus 98 ~~ii~TH~H~DH~g-----g~~~l~~~~-~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~ 171 (303)
T 4ax1_B 98 RAIVFSHEHFDHAG-----SLAELQKAT-GAPVYARAPAIDTLKRGLPDRTDPNFEVAEPVAPVANIVTLADDGVVSVGP 171 (303)
T ss_dssp EEEECSCSSHHHHT-----THHHHHHHH-CCCEEEEHHHHHHHHHTSCCTTSTTGGGCCCCCCCSCEEEECTTCEEEETT
T ss_pred cEEEcCCCCccccC-----CHHHHHhhc-CCEEEEcHHHHHHHhccccCccccccccccCcCCCCCcEEeCCCCEEEECC
Confidence 79999999999999 999998864 899999998877665431 112346788999999999
Q ss_pred EEEEEEeCCCCCCCCeEEEECCC-----CEEEEccccCCCCccccccC----CCCCHHHHHHHHHHHHcCCCCEEEcCCC
Q 011237 323 QRLTVVFSPGHTDGHVALLHAST-----NSLIVGDHCVGQGSAVLDIT----AGGNMTDYFQSTYKFLELSPHALIPMHG 393 (490)
Q Consensus 323 ~~l~vi~tPGHT~g~i~l~~~~~-----~vLftGD~l~~~~~~~~~~~----~~~~~~~~~~SL~~L~~l~~~~ilPgHG 393 (490)
.+++++++||||+|++++++++. +.+|+||+++.........+ ...+..+|.+||++++.+++++++||||
T Consensus 172 ~~v~~~~~pgHt~g~~~~~~~~~~~~~~~~~l~gD~l~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~vv~~Hg 251 (303)
T 4ax1_B 172 LALTAVASPGHTPGGTSWTWRSCEGDDCRQMVYADSLTAISDDVFRYSDDAAHPGYLAAFRNTLARVAALDCDILVTPHP 251 (303)
T ss_dssp EEEEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCCCCCCCSSCCTTCGGGSTTHHHHHHHHHHHHHTSCCSEEECSSG
T ss_pred eEEEEEeCCCCCccceEEEEEecCCCceeEEEEeCCccccCcCcccCCCCCCCccHHHHHHHHHHHHhcCCCCEEEcCCc
Confidence 99999999999999999999752 35666999875544333322 2246899999999999999999999999
Q ss_pred CCCCCh-------------HHHHHHHHHHHHHHHHHHHHHHH
Q 011237 394 RVNLWP-------------KHMLCGYLKNRRAREAAILQAIE 422 (490)
Q Consensus 394 ~~~~~~-------------~~~i~~~l~~~~~r~~~il~~l~ 422 (490)
.+.... .+...+|++...++.++.++.-+
T Consensus 252 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~ 293 (303)
T 4ax1_B 252 SASGLWNRIGPRAAAPLMDTTACRRYAQGARQRLEKRLAEEA 293 (303)
T ss_dssp GGGTGGGTSSTTCCSCSCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhcccCCCCccCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 975411 23355666666665555555443
No 26
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A*
Probab=99.92 E-value=4.2e-25 Score=216.89 Aligned_cols=154 Identities=19% Similarity=0.281 Sum_probs=121.8
Q ss_pred ceEEEec----CCeEEEcCCCCChHHHHHHHHHHhCC-CceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhH
Q 011237 223 NHRFVAQ----GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTM 297 (490)
Q Consensus 223 ~~~~li~----g~~iLIDtG~~~~~~~~L~~~~~~~~-~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~ 297 (490)
|++|++. ++.+|||||... .+.+.+++.+ .+++|++||.|.||+| |+..|++.+|+++||+++.+.
T Consensus 12 n~~yli~~~~~~~~vlID~G~~~----~i~~~l~~~g~~i~~IllTH~H~DH~g-----g~~~l~~~~~~~~v~~~~~~~ 82 (260)
T 1qh5_A 12 NYMYLVIDDETKEAAIVDPVQPQ----KVVDAARKHGVKLTTVLTTHHHWDHAG-----GNEKLVKLESGLKVYGGDDRI 82 (260)
T ss_dssp EEEEEEEETTTTEEEEESCSSHH----HHHHHHHHHTCEEEEEECCCSSHHHHT-----THHHHHHHSTTCEEEESCTTS
T ss_pred eEEEEEEECCCCEEEEEcCCCHH----HHHHHHHHcCCCccEEEeCCCCccccC-----CHHHHHHHCCCCEEEECcccC
Confidence 4455553 348999999533 2333333332 3569999999999999 999999998889999986421
Q ss_pred HhhccCCCCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEE-----CCCCEEEEccccCCCCccccccCCCCCHHH
Q 011237 298 RRIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLH-----ASTNSLIVGDHCVGQGSAVLDITAGGNMTD 372 (490)
Q Consensus 298 ~~l~~~~~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~-----~~~~vLftGD~l~~~~~~~~~~~~~~~~~~ 372 (490)
+.....+.+|+.+.+|+.+++++++||||+||+|+++ ++.++||+||+++..+... .+.++..+
T Consensus 83 --------~~~~~~~~~g~~~~~g~~~~~vi~tPGHt~g~~~~~~~~~~~~~~~~lftGD~l~~~~~g~---~~~~~~~~ 151 (260)
T 1qh5_A 83 --------GALTHKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCGK---FYEGTADE 151 (260)
T ss_dssp --------TTCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEEECSSSSSCCEEEEETTEETTEECC---CTTCCHHH
T ss_pred --------CCCCEEeCCCCEEEECCEEEEEEECCCCCCCCEEEEEeccCCCCCCEEEEcCccccCCcCC---CCCCCHHH
Confidence 2235678899999999999999999999999999998 7789999999988654333 35679999
Q ss_pred HHHHHH-HHHcCCCC-EEEcCCCCCC
Q 011237 373 YFQSTY-KFLELSPH-ALIPMHGRVN 396 (490)
Q Consensus 373 ~~~SL~-~L~~l~~~-~ilPgHG~~~ 396 (490)
+++||+ +|..++.+ .++||||.+.
T Consensus 152 ~~~Sl~~~l~~l~~~~~v~pgHg~~~ 177 (260)
T 1qh5_A 152 MCKALLEVLGRLPPDTRVYCGHEYTI 177 (260)
T ss_dssp HHHHHHTTTTTSCTTCEEEESBCCHH
T ss_pred HHHHHHHHHHcCCCCeEEEcCCCchh
Confidence 999994 79999988 4899999854
No 27
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12
Probab=99.92 E-value=1.3e-24 Score=204.69 Aligned_cols=191 Identities=17% Similarity=0.123 Sum_probs=141.3
Q ss_pred ceecC-CceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHhCCCceEEEe
Q 011237 184 YQEYP-PGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLPRKLIVFV 262 (490)
Q Consensus 184 ~~eva-~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~Ivi 262 (490)
++|+. ||+|.+....+. .....|+|+|..+ ++.+|||||.... .+.+.+++.+++++|++
T Consensus 2 ~~~i~~~~v~~~~~~~~~--~~~~~n~~li~~~--------------~~~iliD~g~~~~---~~~~~l~~~g~i~~ii~ 62 (201)
T 2p97_A 2 MKSLHRPDLYSWSTFNPA--RNIDFNGFAWIRP--------------EGNILIDPVALSN---HDWKHLESLGGVVWIVL 62 (201)
T ss_dssp CEECSSTTEEEEEEEETT--TTEEEEEEEECCT--------------TCCEEESCCCCCH---HHHHHHHHTTCCSEEEC
T ss_pred cccccCCCEEeeecccCC--CCcceeEEEEEeC--------------CeeEEEECCCCcH---HHHHHHHhcCCCCEEEE
Confidence 47899 999999653221 1223566666543 4589999995433 23344445567889999
Q ss_pred cCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCCCCCCceecCCCceEEECCEEEEEEeCC-CCCCCCeEEE
Q 011237 263 THHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSP-GHTDGHVALL 341 (490)
Q Consensus 263 TH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~~~~~~~~~~~g~~l~lgg~~l~vi~tP-GHT~g~i~l~ 341 (490)
||. ||+| |+..|++.+ +++|++++.+...+... ....+.+|+.+. + .++++++| |||+||++++
T Consensus 63 TH~--DH~g-----g~~~~~~~~-~a~v~~~~~~~~~~~~~----~~~~~~~g~~~~--~-~~~~~~~p~gHt~g~~~~~ 127 (201)
T 2p97_A 63 TNS--DHVR-----SAKEIADQT-YTKIAGPVAEKENFPIY----CDRWLSDGDELV--P-GLKVMELQGSKTPGELALL 127 (201)
T ss_dssp SSG--GGCT-----THHHHHHHS-CCEEEEEGGGTTSCSSC----CSEEECTTCBSS--T-TEEEEEECSSSSTTEEEEE
T ss_pred CCc--hhhh-----hHHHHHHhc-CCEEEEcHhHhhhhccc----CceecCCCCEEc--c-eEEEEECCCCCCCCcEEEE
Confidence 999 9999 999999886 59999999887665432 245677887653 2 69999999 9999999999
Q ss_pred ECCCCEEEEccccCCCCcccccc-C--CCCCHHHHHHHHHHHHc-CCCCEEEcCCCCCC-CChHHHHHHHHHH
Q 011237 342 HASTNSLIVGDHCVGQGSAVLDI-T--AGGNMTDYFQSTYKFLE-LSPHALIPMHGRVN-LWPKHMLCGYLKN 409 (490)
Q Consensus 342 ~~~~~vLftGD~l~~~~~~~~~~-~--~~~~~~~~~~SL~~L~~-l~~~~ilPgHG~~~-~~~~~~i~~~l~~ 409 (490)
+++ ++||+||+++......+.. + ...+..+|++|+++|++ ++++.++||||.++ .++.+.+++|++.
T Consensus 128 ~~~-~~lf~GD~~~~~~~g~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~~v~pgHg~~~~~~~~~~l~~~~~~ 199 (201)
T 2p97_A 128 LEE-TTLITGDLVRAYRAGGLEILPDEKLMNKQKVVASVRRLAALEKVEAVLVGDGWSVFRDGRDRLKELVAT 199 (201)
T ss_dssp ETT-TEEEECSSEEBSSTTSCEECCGGGCSCHHHHHHHHHHHHTCTTCCEEEESBBCCBCSCHHHHHHHHHHH
T ss_pred EcC-CEEEECccccccCCCccccCCccccCCHHHHHHHHHHHHhcCCCCEEEeCCCcceecCHHHHHHHHHHh
Confidence 987 9999999987652111111 1 13689999999999999 79999999999654 5666667766653
No 28
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.92 E-value=1.7e-24 Score=224.26 Aligned_cols=215 Identities=16% Similarity=0.181 Sum_probs=151.3
Q ss_pred ceecCCceEEEecCCCCCCCcccccE-EEEccCCCCCCCcceEEEec-CCeEEEcCCCCChHHHHHHHHHH---hCCCce
Q 011237 184 YQEYPPGVILVPMQSRTAKPFLTTNL-IVFAPDSVSDDCGNHRFVAQ-GEALIVDPGCRSEFHEELLKVVA---SLPRKL 258 (490)
Q Consensus 184 ~~eva~Gv~~i~~~~~~~~p~~~~N~-~~i~~~~~~~~~~~~~~li~-g~~iLIDtG~~~~~~~~L~~~~~---~~~~~~ 258 (490)
+.+|++|||+++........|. +. +-+ ..+..+|+|++. ++.+|||||.... .+.+.+.+. ...+++
T Consensus 3 ~~~i~~~v~~v~~~d~~~~~f~--~~~~~~-----~~g~~~n~~li~~~~~iliD~g~~~~-~~~~~~~l~~~~~~~~i~ 74 (398)
T 1ycg_A 3 PVAITDGIYWVGAVDWNIRYFH--GPAFST-----HRGTTYNAYLIVDDKTALVDTVYEPF-KEELIAKLKQIKDPVKLD 74 (398)
T ss_dssp CEEEETTEEECCEEESSCCEET--TTTEEC-----TTCEEECCEEECSSSCEEECCCCGGG-HHHHHHHHHHHCSSCCCS
T ss_pred ceEEeCCEEEEEeecCCccccc--ceeccC-----CCCeeEEEEEEECCCEEEEeCCCccc-HHHHHHHHHHhcCcccCC
Confidence 4789999999954422111110 00 111 112345566664 3589999998732 223333333 245678
Q ss_pred EEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccC-CC-CCCceecCCCceEEECCEEEEEEeCC-CCCC
Q 011237 259 IVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKD-DW-SLGYTSVSGSEDICVGGQRLTVVFSP-GHTD 335 (490)
Q Consensus 259 ~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~-~~-~~~~~~~~~g~~l~lgg~~l~vi~tP-GHT~ 335 (490)
+||+||.|.||+| |+..+.+.+|+++|++++.+...+... .. ......+.+|+.+++|+.+++++++| |||+
T Consensus 75 ~iiiTH~H~DH~g-----g~~~l~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~p~gH~~ 149 (398)
T 1ycg_A 75 YLVVNHTESDHAG-----AFPAIMELCPDAHVLCTQRAFDSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWP 149 (398)
T ss_dssp EEEESCCSHHHHT-----THHHHHHHCTTCEEEECHHHHHHHHHHTCSCCCEEEECCTTCEEECSSCEEEEEECTTSSST
T ss_pred EEEeCCCCcchhh-----hHHHHHHHCCCCEEEEcHHHHHHHHHHhCCCCcceEEeCCCCEEeeCCcEEEEEeCCCCCCC
Confidence 9999999999999 999999988999999999887766431 11 13456788999999999999999999 8999
Q ss_pred CCeEEEECCCCEEEEccccCCCCccc--cccC--C---------------CCCHHHHHHHHHHHHc--CCCCEEEcCCCC
Q 011237 336 GHVALLHASTNSLIVGDHCVGQGSAV--LDIT--A---------------GGNMTDYFQSTYKFLE--LSPHALIPMHGR 394 (490)
Q Consensus 336 g~i~l~~~~~~vLftGD~l~~~~~~~--~~~~--~---------------~~~~~~~~~SL~~L~~--l~~~~ilPgHG~ 394 (490)
|+++++.++.++||+||++...+... +... + ......+.+++++|++ +++++|+||||.
T Consensus 150 ~~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~l~~l~~~~l~~~~i~p~Hg~ 229 (398)
T 1ycg_A 150 DSMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILMPFSNLITKKLDEIQKINLAIKTIAPSHGI 229 (398)
T ss_dssp TCEEEEETTTTEEEEETTTCCCCCCSCCBGGGSCHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHTTCCCSEEEESSSC
T ss_pred CcEEEEECCCcEEEeccccccccCccccccccccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhCCCCccEEECCCch
Confidence 99999999999999999965433221 1100 0 0112334789999999 999999999999
Q ss_pred CCC-ChHHHHHHHHHHHH
Q 011237 395 VNL-WPKHMLCGYLKNRR 411 (490)
Q Consensus 395 ~~~-~~~~~i~~~l~~~~ 411 (490)
+.. +..+.+..|++...
T Consensus 230 ~~~~~~~~~l~~~~~~~~ 247 (398)
T 1ycg_A 230 IWRKDPGRIIEAYARWAE 247 (398)
T ss_dssp BBCSCHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHhc
Confidence 886 66777777776544
No 29
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.92 E-value=2.2e-24 Score=224.93 Aligned_cols=215 Identities=14% Similarity=0.077 Sum_probs=149.8
Q ss_pred CCceecCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEec-CCeEEEcCCCCChHHHHHHHHHHh---CCCc
Q 011237 182 LSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQ-GEALIVDPGCRSEFHEELLKVVAS---LPRK 257 (490)
Q Consensus 182 ~~~~eva~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~-g~~iLIDtG~~~~~~~~L~~~~~~---~~~~ 257 (490)
+.+.+|++|||+++........|. + +-+ ..+..+|+|++. ++.+|||||.... .+.+.+.+.+ ..++
T Consensus 8 ~~~~~i~~~v~~v~~~~~~~~~f~--~-~~~-----~~g~~~n~~li~~~~~iLID~G~~~~-~~~~~~~l~~~~~~~~i 78 (414)
T 2q9u_A 8 VQDQEMIPGVYWVGIVDWMVRIFH--G-YHT-----DEGSSYNSYFIDDECPTVIDSVKYPF-AEEWLSRIAACCPLDKI 78 (414)
T ss_dssp SCCCEEETTEEECCEEESSCCEET--T-EEC-----TTCEEECCEEECSSSCEEECCCCGGG-HHHHHHHHHHHSCGGGC
T ss_pred ceeEEeeCCeEEEEEeeCCccccc--c-ccC-----CCCcceeEEEEECCCEEEEeCCCccc-HHHHHHHHHHhcCcccC
Confidence 556899999999854322111111 1 111 112235566664 3589999998532 2233333332 3456
Q ss_pred eEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccC--CCCCCceecCCCceEEECCEEEEEEeCC-CCC
Q 011237 258 LIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKD--DWSLGYTSVSGSEDICVGGQRLTVVFSP-GHT 334 (490)
Q Consensus 258 ~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~--~~~~~~~~~~~g~~l~lgg~~l~vi~tP-GHT 334 (490)
++||+||.|.||+| |+..+++.+|+++|++++.+...+... ....+...+.+|+.+++|+.+++++++| |||
T Consensus 79 ~~ii~TH~H~DH~g-----g~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lg~~~~~~~~~p~gHt 153 (414)
T 2q9u_A 79 KYVVMNHAEGDHAS-----SLKDHYHKFTNATFVCTKKCQEHLKILYGMEKATWLIVDDKYTLKIGKRTLKFIPVPLLHW 153 (414)
T ss_dssp CEEECSCCSGGGTT-----THHHHGGGSTTCEEEECHHHHHHHHHHHCCTTCCEEECCTTCCEECSSCEEEEEECTTSSS
T ss_pred CEEEeCCCCcchhc-----CHHHHHHHCCCCEEEECHHHHHHHHHHhCCCCCeeEEeCCCCEEEECCeEEEEEeCCCCCC
Confidence 79999999999999 999999988999999999887765421 1112456788999999999999999999 999
Q ss_pred CCCeEEEECCCCEEEEccccCCCCcc--ccccCC-----------------CCCHHHHHHHHHHHHcCCCCEEEcCCCCC
Q 011237 335 DGHVALLHASTNSLIVGDHCVGQGSA--VLDITA-----------------GGNMTDYFQSTYKFLELSPHALIPMHGRV 395 (490)
Q Consensus 335 ~g~i~l~~~~~~vLftGD~l~~~~~~--~~~~~~-----------------~~~~~~~~~SL~~L~~l~~~~ilPgHG~~ 395 (490)
+||++++.+++++||+||++...... .+.... ......+.+||+++.++++++|+||||.+
T Consensus 154 ~~~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~i~pgHg~~ 233 (414)
T 2q9u_A 154 PDSTFTYCPEDKILFSNDGFGQHYATSRRWADECDVSHVMHLFKEYTANILGLFSAQMRKALEVASTVEIKYILSAHGVS 233 (414)
T ss_dssp TTCEEEEETTTTEEEEETTTCCCCCCSCCBGGGSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCSEEEESSSCB
T ss_pred CCceEEEECCCeEEEEccccccccCcccccccccchhhHHHHHHHHHHHheehHHHHHHHHHHHHhCCCCCEEECCCcCe
Confidence 99999999999999999976432211 111100 12335678999999999999999999998
Q ss_pred CCC--hHHHHHHHHHHH
Q 011237 396 NLW--PKHMLCGYLKNR 410 (490)
Q Consensus 396 ~~~--~~~~i~~~l~~~ 410 (490)
+.. ..+.+..|.+..
T Consensus 234 ~~~~~~~~~l~~~~~~~ 250 (414)
T 2q9u_A 234 WRGDAMGLAIAEYDRWS 250 (414)
T ss_dssp EEHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHh
Confidence 763 445555555544
No 30
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}
Probab=99.92 E-value=1.9e-24 Score=204.28 Aligned_cols=159 Identities=26% Similarity=0.369 Sum_probs=122.4
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCC-CceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccC-----
Q 011237 230 GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKD----- 303 (490)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~-~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~----- 303 (490)
++.+|||||... +.+.+.+.+.+ .+++|++||.|.||+| |+..|.+.+ +++|++++.+...+.+.
T Consensus 24 ~~~iLiD~G~~~---~~l~~~l~~~g~~i~~ii~TH~H~DH~g-----g~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~ 94 (210)
T 2xf4_A 24 RLAALVDPGGDA---EKIKQEVDASGVTLMQILLTHGHLDHVG-----AASELAQHY-GVPVIGPEKEDEFWLQGLPAQS 94 (210)
T ss_dssp CEEEEECCCSCH---HHHHHHHHHHTCEEEEEECSCSCHHHHT-----THHHHHHHH-TCCEECCCGGGHHHHHTHHHHH
T ss_pred CcEEEEcCCCCH---HHHHHHHHHcCCceeEEEECCCChhhhc-----CHHHHHHHc-CCcEEEecchHHHHhccchhhh
Confidence 348999999643 23444444332 3669999999999999 999998765 68999987765443211
Q ss_pred ---CC-----CCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCCCEEEEccccCCCCccccccCCCCCHHHHHH
Q 011237 304 ---DW-----SLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQ 375 (490)
Q Consensus 304 ---~~-----~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~ 375 (490)
.. ..+...+++|+.+.+|+.+++++++||||+||+++++++.+++|+||+++.......+ .+.++..+|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~pgHt~g~~~~~~~~~~~lf~GD~~~~~~~~~~~-~~~~~~~~~~~ 173 (210)
T 2xf4_A 95 RMFGLDECQPLTPDRWLNDGDRVSVGNVTLQVLHCPGHTPGHVVFFDEQSQLLISGDVIFKGGVGRSD-FPRGDHTQLID 173 (210)
T ss_dssp HHTTCCCCCCCCCSBCCCTTCEEEETTEEEEEEECCSSSTTCEEEEETTTTEEEEETSEETTEECCCC-STTCCHHHHHH
T ss_pred hhcCCcccCCCCCceEECCCCEEEECCeEEEEEECCCCCCCcEEEEeCCCCEEEECCEeccCCcCCCC-CCCCCHHHHHH
Confidence 11 1234568899999999999999999999999999999989999999998754322222 24579999999
Q ss_pred HH-HHHHcCCCC-EEEcCCCCCCCC
Q 011237 376 ST-YKFLELSPH-ALIPMHGRVNLW 398 (490)
Q Consensus 376 SL-~~L~~l~~~-~ilPgHG~~~~~ 398 (490)
|| ++|++++.+ .++||||++...
T Consensus 174 sl~~~l~~l~~~~~v~pgHg~~~~~ 198 (210)
T 2xf4_A 174 AIKRKLLPLGDDVTFIPGHGPLSTL 198 (210)
T ss_dssp HHHHHTGGGCTTCEEEESSSCCEEH
T ss_pred HHHHHHhcCCCCeEEECCCCCcccH
Confidence 99 789999887 799999998653
No 31
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.92 E-value=6.8e-24 Score=219.93 Aligned_cols=213 Identities=14% Similarity=0.141 Sum_probs=149.0
Q ss_pred CceecCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEec-CCeEEEcCCCCChHHHHHHHHHHhC---CCce
Q 011237 183 SYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQ-GEALIVDPGCRSEFHEELLKVVASL---PRKL 258 (490)
Q Consensus 183 ~~~eva~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~-g~~iLIDtG~~~~~~~~L~~~~~~~---~~~~ 258 (490)
.+.+|++|||+++........|. . +- +...+..+|+|++. ++.+|||||.... .+.+.+.+.+. .+++
T Consensus 2 ~~~~i~~~v~~v~~~d~~~~~f~--~-~~----~~~~g~~~n~~li~~~~~iliD~G~~~~-~~~~~~~l~~~~~~~~i~ 73 (402)
T 1e5d_A 2 QATKIIDGFHLVGAIDWNSRDFH--G-YT----LSPMGTTYNAYLVEDEKTTLFDTVKAEY-KGELLCGIASVIDPKKID 73 (402)
T ss_dssp CCEEEETTEEEEEEEETTCCEET--T-TE----ECTTCEEEEEEEECSSSCEEECCCCGGG-HHHHHHHHHTTSCGGGCC
T ss_pred CceEeeCCeEEEEeccCCccccc--C-CC----cCCCCcceEEEEEECCCEEEEeCCCCcc-HHHHHHHHHHhCCcccCC
Confidence 35799999999965422111110 0 00 00112345566664 3589999998632 23444444443 4567
Q ss_pred EEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccC-CC-CCCceecCCCceEEECCEEEEEEeCC-CCCC
Q 011237 259 IVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKD-DW-SLGYTSVSGSEDICVGGQRLTVVFSP-GHTD 335 (490)
Q Consensus 259 ~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~-~~-~~~~~~~~~g~~l~lgg~~l~vi~tP-GHT~ 335 (490)
+|++||.|.||+| |+..+.+.+|+++|++++.+...+... .. ......+.+|+.+++|+.+++++++| |||+
T Consensus 74 ~iiiTH~H~DH~g-----g~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~p~gH~~ 148 (402)
T 1e5d_A 74 YLVIQHLELDHAG-----ALPALIEACQPEKIFTSSLGQKAMESHFHYKDWPVQVVKHGETLSLGKRTVTFYETRMLHWP 148 (402)
T ss_dssp EEEECCCSHHHHT-----THHHHHHHHCCSEEEEEHHHHHHHHHHHCCSSCCEEEECTTCEEECSSCEEEEEECTTSSST
T ss_pred EEEeCCCCccccc-----cHHHHHHHCCCCEEEEChHHHHHHHHHhCCCCCceEEcCCCCEEEECCCEEEEEeCCCCCCC
Confidence 9999999999999 999999888899999999887765421 11 23466789999999999999999999 9999
Q ss_pred CCeEEEECCCCEEEEccccCCCCccc--cccCCC----------------CC-HHHHHHHHHHHHc--CCCCEEEcCCCC
Q 011237 336 GHVALLHASTNSLIVGDHCVGQGSAV--LDITAG----------------GN-MTDYFQSTYKFLE--LSPHALIPMHGR 394 (490)
Q Consensus 336 g~i~l~~~~~~vLftGD~l~~~~~~~--~~~~~~----------------~~-~~~~~~SL~~L~~--l~~~~ilPgHG~ 394 (490)
|+++++.++.++||+||++...+... +....+ ++ ...+.++++++++ +++++|+||||.
T Consensus 149 ~~~~~~~~~~~~l~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~~~i~p~Hg~ 228 (402)
T 1e5d_A 149 DSMVSWFADEKVLISNDIFGQNIAASERFSDQIPVHTLERAMREYYANIVNPYAPQTLKAIETLVGAGVAPEFICPDHGV 228 (402)
T ss_dssp TCEEEEETTTTEEEEETTTCCCCCCSCCBGGGSCHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHTTCCCSEEEESSSC
T ss_pred CcEEEEECCCCEEEecccccCccccccccccccchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCCCCcCEEecCCcc
Confidence 99999999999999999965433221 111000 11 2345789999999 999999999999
Q ss_pred CCC---ChHHHHHHHHH
Q 011237 395 VNL---WPKHMLCGYLK 408 (490)
Q Consensus 395 ~~~---~~~~~i~~~l~ 408 (490)
+.. +..+.+..|++
T Consensus 229 ~~~~~~~~~~~~~~~~~ 245 (402)
T 1e5d_A 229 IFRGADQCTFAVQKYVE 245 (402)
T ss_dssp BEESHHHHHHHHHHHHH
T ss_pred eeecCCCHHHHHHHHHH
Confidence 876 34556666655
No 32
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana}
Probab=99.91 E-value=6.1e-24 Score=206.77 Aligned_cols=158 Identities=21% Similarity=0.357 Sum_probs=126.5
Q ss_pred cceEEEec------CCeEEEcCCCCChHHHHHHHHHHhCC-CceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeCh
Q 011237 222 GNHRFVAQ------GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHE 294 (490)
Q Consensus 222 ~~~~~li~------g~~iLIDtG~~~~~~~~L~~~~~~~~-~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~ 294 (490)
++++|+|. ++++|||||... .+.+.+.+++.+ .+++|++||.|.||+| |+..|++.+++++|++++
T Consensus 14 ~~~~yli~~~~~~~~~~ilID~g~~~--~~~~~~~l~~~g~~i~~Il~TH~H~DH~g-----g~~~l~~~~~~~~v~~~~ 86 (245)
T 2gcu_A 14 STFTYLLADVSHPDKPALLIDPVDKT--VDRDLKLIDELGLKLIYAMNTHVHADHVT-----GTGLLKTKLPGVKSVISK 86 (245)
T ss_dssp TEEEEEEEETTSTTCEEEEESCBGGG--HHHHHHHHHHHTCEEEEEECSSCCSSSCB-----SHHHHHHHSTTCEEEEEG
T ss_pred ceEEEEEEcCCCCCCcEEEEeCCCch--HHHHHHHHHHCCCeeeEEEeCCCChhhhh-----hHHHHHHhCCCCeEEecc
Confidence 45566553 358999999852 133444444333 3679999999999999 999999867899999997
Q ss_pred hhHHhhccCCCCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCC------CEEEEccccCCCCccccccCCCC
Q 011237 295 NTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAST------NSLIVGDHCVGQGSAVLDITAGG 368 (490)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~------~vLftGD~l~~~~~~~~~~~~~~ 368 (490)
.+.. .....+.+|+.+.+|+.+++++++||||+||+++++++. ++||+||+++..+....+. +.+
T Consensus 87 ~~~~--------~~~~~~~~g~~~~~g~~~i~v~~tpGHt~g~~~~~~~~~~~~~~~~~lftGD~~~~~~~~~~d~-~~~ 157 (245)
T 2gcu_A 87 ASGS--------KADLFLEPGDKVSIGDIYLEVRATPGHTAGCVTYVTGEGADQPQPRMAFTGDAVLIRGCGRTDF-QEG 157 (245)
T ss_dssp GGCC--------CCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEECCSTTSCSSCEEEEETTSBTTBCCCCSS-TTC
T ss_pred cccc--------cCCEEcCCCCEEEECCEEEEEEECCCCCCCCEEEEECCccccccccEEEECCccccCCccCCCC-CCC
Confidence 6531 245678999999999999999999999999999999875 7999999998665554433 467
Q ss_pred CHHHHHHHH-HHHHcCCCC-EEEcCCCCC
Q 011237 369 NMTDYFQST-YKFLELSPH-ALIPMHGRV 395 (490)
Q Consensus 369 ~~~~~~~SL-~~L~~l~~~-~ilPgHG~~ 395 (490)
+..+|++|| ++|.+++++ .|+||||..
T Consensus 158 ~~~~~~~sl~~~l~~l~~~~~v~pgHg~~ 186 (245)
T 2gcu_A 158 SSDQLYESVHSQIFTLPKDTLIYPAHDYK 186 (245)
T ss_dssp CHHHHHHHHHHHTTTSCTTCEEEESBCSS
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 899999999 899999988 799999984
No 33
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A
Probab=99.91 E-value=4.6e-24 Score=201.57 Aligned_cols=161 Identities=22% Similarity=0.366 Sum_probs=122.1
Q ss_pred ceEEEec--CCeEEEcCCCCChHHHHHHHHHHhCC-CceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHh
Q 011237 223 NHRFVAQ--GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRR 299 (490)
Q Consensus 223 ~~~~li~--g~~iLIDtG~~~~~~~~L~~~~~~~~-~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~ 299 (490)
+|+|++. ++.+|||||.... .+.+.+++.+ .+++|++||.|.||+| |+..|++.+ +++|++++.+...
T Consensus 13 ~n~~li~~~~~~iliD~G~~~~---~l~~~l~~~g~~i~~vilTH~H~DH~g-----g~~~l~~~~-~~~v~~~~~~~~~ 83 (207)
T 2zwr_A 13 ENAYLVETGEGPVLIDPGDEPE---KLLALFQTTGLIPLAILLTHAHFDHVG-----AVAPLVEAL-DLPVYLHPLDLPL 83 (207)
T ss_dssp EEEEEEEETTEEEEECCCSCHH---HHHHHHHHHTCCCSCEECSCCCGGGTT-----THHHHHHHH-CCCEEECGGGHHH
T ss_pred cEEEEEEeCCcEEEEeCCCCHH---HHHHHHHHcCCcccEEEECCCChHHHc-----cHHHHHHHh-CCcEEECHHHHHH
Confidence 4455553 3589999997532 3333333332 4679999999999999 999998765 7999999988776
Q ss_pred hccC-------C-----CCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCCCEEEEccccCCCCccccccCCC
Q 011237 300 IGKD-------D-----WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAG 367 (490)
Q Consensus 300 l~~~-------~-----~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~ 367 (490)
+... . .+.....+.+|+.+. .++++++||||+||++++++++++||+||+++.......+ .+.
T Consensus 84 ~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~i~----~~~~~~~pGHt~g~~~~~~~~~~~lf~GD~~~~~~~~~~~-~~~ 158 (207)
T 2zwr_A 84 YEGADLAARAWGLAIPKPPLPVRPLEEGMRLF----GFQVLHLPGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRYD-LPG 158 (207)
T ss_dssp HHTHHHHHHHTTCCCCCCCSCCEECCTTCEET----TEEEEECCSSSTTCEEEEETTTTEEEEETSEETTEECCSS-STT
T ss_pred HhCchhhhhhcCCCCCcCCCCceEeCCCCEEE----EEEEEeCCCCCCCcEEEEECCCCEEEEecccCCCCcCCCC-CCC
Confidence 5421 0 111345677888765 5999999999999999999989999999998754322222 245
Q ss_pred CCHHHHHHHHHHHHcCCCC-EEEcCCCCCCC
Q 011237 368 GNMTDYFQSTYKFLELSPH-ALIPMHGRVNL 397 (490)
Q Consensus 368 ~~~~~~~~SL~~L~~l~~~-~ilPgHG~~~~ 397 (490)
++..+|++||++|++++.+ .++||||++..
T Consensus 159 ~~~~~~~~sl~~l~~l~~~~~i~pgHg~~~~ 189 (207)
T 2zwr_A 159 ADPKALFASLKRLLSLPPETRVHPGHGPGTT 189 (207)
T ss_dssp CCHHHHHHHHHHHTTSCTTCEEEESBSCCEE
T ss_pred CCHHHHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 7999999999999999988 69999999865
No 34
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei}
Probab=99.91 E-value=1.1e-23 Score=210.66 Aligned_cols=168 Identities=20% Similarity=0.286 Sum_probs=128.0
Q ss_pred CcceEEEec----CCeEEEcCCCCC---------hHHHHHHHHHHhCC-CceEEEecCCCccccCchhhccHHHHHHhCC
Q 011237 221 CGNHRFVAQ----GEALIVDPGCRS---------EFHEELLKVVASLP-RKLIVFVTHHHRDHVDGEFIRGLSIIQKCNP 286 (490)
Q Consensus 221 ~~~~~~li~----g~~iLIDtG~~~---------~~~~~L~~~~~~~~-~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p 286 (490)
.++++|++. ++++|||||... ...+.+.+.+++.+ .+++|++||.|.||++ |+..|++.+
T Consensus 15 ~~~~~yli~~~~~~~~ilID~g~~~~~~~~~~~~~~~~~l~~~l~~~g~~i~~Il~TH~H~DH~g-----g~~~l~~~~- 88 (298)
T 4efz_A 15 TCTISYLLFDSGSGECALIDSVLDYDPKSGRTRTASADQLIARVAALGARVRWLLETHVHADHLS-----AAPYLKTRV- 88 (298)
T ss_dssp TCBEEEEEECTTTCEEEEESCCBEEETTTTEEECHHHHHHHHHHHHHTCEEEEEECSSCCSSSBC-----CHHHHHHHH-
T ss_pred cccEEEEEEECCCCeEEEEcCCCCccccccccCcccHHHHHHHHHHCCCcceEEEECCCchhhhh-----hHHHHHHHh-
Confidence 345666663 348999999742 23345555555444 3569999999999999 999999876
Q ss_pred CCEEEeChhhHHhhcc-------CC-C----CCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCCC--------
Q 011237 287 DAILLAHENTMRRIGK-------DD-W----SLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTN-------- 346 (490)
Q Consensus 287 ~a~I~~~~~~~~~l~~-------~~-~----~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~-------- 346 (490)
+++|++++.+...+.. .. + ......+.+|+.+.+|+.+++++++||||+||+++++++.+
T Consensus 89 ~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~g~~~i~vi~tPGHT~g~~~~~~~~~~~~~~~~~~ 168 (298)
T 4efz_A 89 GGEIAIGRHVTRVQDVFGKLFNAGPAFAHDGSQFDRLLDDGDTLALGALSIRAMHTPGHTPACMTYVVTEAHAAHDARDA 168 (298)
T ss_dssp CCEEEEETTHHHHHHHHHHHTTCCTTSCSSSTTSSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEETTCCGGGCBC
T ss_pred CCcEEEChhHHHHHHHHHHhcCCcccccccccCCCEEeCCCCEEEECCEEEEEEECCCCCcccEEEEECCCcccccCCce
Confidence 8999998875543210 00 0 11236789999999999999999999999999999998766
Q ss_pred EEEEccccCCCCcc--ccccCCCCCHHHHHHHHHHHHcCCCC-EEEcCCCCC
Q 011237 347 SLIVGDHCVGQGSA--VLDITAGGNMTDYFQSTYKFLELSPH-ALIPMHGRV 395 (490)
Q Consensus 347 vLftGD~l~~~~~~--~~~~~~~~~~~~~~~SL~~L~~l~~~-~ilPgHG~~ 395 (490)
++|+||+++..... ..+. +.++..+|++||++|.+++++ .|+||||..
T Consensus 169 ~lftGD~l~~~~~g~~r~d~-~~~d~~~~~~Sl~kl~~L~~~~~v~pgHg~~ 219 (298)
T 4efz_A 169 AAFVGDTLFMPDYGTARCDF-PGGDARSLYRSIRKVLSLPPATRLYMCHDYQ 219 (298)
T ss_dssp EEECCSSBCCTTTCBCCCCS-TTCCHHHHHHHHHHHTTSCTTCEEECSBCSC
T ss_pred EEEEcCccccCCCCCccCCC-CCCCHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 99999999864222 3332 467999999999999999998 699999964
No 35
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Probab=99.91 E-value=9.2e-24 Score=207.38 Aligned_cols=186 Identities=17% Similarity=0.210 Sum_probs=138.3
Q ss_pred CCceecCCceEEEecCCCCCCCcccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHhCC----Cc
Q 011237 182 LSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLP----RK 257 (490)
Q Consensus 182 ~~~~eva~Gv~~i~~~~~~~~p~~~~N~~~i~~~~~~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~~~----~~ 257 (490)
+.+.+|++|+|++. ....|+|+|..+ ++.+|||||.... .+.+.+.+++.+ ++
T Consensus 21 ~~~~~v~~~v~~ig--------~~~~~~~li~~~--------------~~~iLID~G~~~~-~~~l~~~l~~~g~~~~~i 77 (269)
T 1sml_A 21 MAPLQIADHTWQIG--------TEDLTALLVQTP--------------DGAVLLDGGMPQM-ASHLLDNMKARGVTPRDL 77 (269)
T ss_dssp CCCEEEETTEEECS--------BTTBCCEEEEET--------------TEEEEECCBSGGG-HHHHHHHHHHTTCCGGGE
T ss_pred CCceeEeCCEEEec--------CCCcEEEEEEeC--------------CceEEEECCCCcc-HHHHHHHHHHcCCChHHC
Confidence 45689999999982 223466666553 4589999998643 234455555443 46
Q ss_pred eEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCC-----------CC--CCceecCCCceEEECCEE
Q 011237 258 LIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDD-----------WS--LGYTSVSGSEDICVGGQR 324 (490)
Q Consensus 258 ~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~-----------~~--~~~~~~~~g~~l~lgg~~ 324 (490)
++||+||.|.||+| |+..|.+.+ +++|++++.+...+.... +. .....+++|+.+++|+.+
T Consensus 78 ~~IilTH~H~DH~g-----g~~~l~~~~-~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~ 151 (269)
T 1sml_A 78 RLILLSHAHADHAG-----PVAELKRRT-GAKVAANAESAVLLARGGSDDLHFGDGITYPPANADRIVMDGEVITVGGIV 151 (269)
T ss_dssp EEEECSCCSHHHHT-----THHHHHHHS-SCEEEECHHHHHHHHTTTCSBTTTBTSSCCCCCCCSEECCTTCEEEETTEE
T ss_pred cEEEeCCCCccccC-----CHHHHHHhc-CCeEEECHHHHHHHhcCCccccccccccCCCCCCCCeEeCCCCEEEECCEE
Confidence 79999999999999 999998875 799999998877654321 01 123568899999999999
Q ss_pred EEEEeCCCCCCCCeEEEECC---CC--EEEEccccCCCCccccccC-CCCCHHHHHHHHHHHHcCCCCEEEcCCCCCC
Q 011237 325 LTVVFSPGHTDGHVALLHAS---TN--SLIVGDHCVGQGSAVLDIT-AGGNMTDYFQSTYKFLELSPHALIPMHGRVN 396 (490)
Q Consensus 325 l~vi~tPGHT~g~i~l~~~~---~~--vLftGD~l~~~~~~~~~~~-~~~~~~~~~~SL~~L~~l~~~~ilPgHG~~~ 396 (490)
++++++||||+||++++++. .+ .+++||+++..+....... ...++.+|.+||+++.++++++++||||.+.
T Consensus 152 i~~~~~pGHt~g~~~~~~~~~~~~~~~~l~~gD~l~~~~~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~l~~~H~~~~ 229 (269)
T 1sml_A 152 FTAHFMAGHTPGSTAWTWTDTRNGKPVRIAYADSLSAPGYQLQGNPRYPHLIEDYRRSFATVRALPCDVLLTPHPGAS 229 (269)
T ss_dssp EEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCCCCTTCCCSSCTTCTTHHHHHHHHHHHHHTSCCSEEECSSGGGG
T ss_pred EEEEECCCCCcccEEEEEecccCCceeEEEEeccccCCCcccccCCCCCcCHHHHHHHHHHHHcCCCCEEEeCCCCcc
Confidence 99999999999999999864 22 6777999875432222111 1124789999999999999999999999864
No 36
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=99.90 E-value=1.1e-22 Score=215.74 Aligned_cols=165 Identities=22% Similarity=0.317 Sum_probs=126.4
Q ss_pred CcceEEEe----cCCeEEEcCCCCChHHHHHHHHHHhCC-CceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChh
Q 011237 221 CGNHRFVA----QGEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHEN 295 (490)
Q Consensus 221 ~~~~~~li----~g~~iLIDtG~~~~~~~~L~~~~~~~~-~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~ 295 (490)
.++|+|++ +++++|||||.... .+.+.+++.+ .+++|++||.|.||+| |+..|++.+ +++|++++.
T Consensus 35 ~~~nsyli~~~~~~~~vlID~g~~~~---~~~~~l~~~g~~i~~Il~TH~H~DH~g-----g~~~l~~~~-~a~v~~~~~ 105 (466)
T 3r2u_A 35 LSQASYLIGCQKTGEAMIIDPIRDLS---SYIRVADEEGLTITHAAETHIHADFAS-----GIRDVAIKL-NANIYVSGE 105 (466)
T ss_dssp TTEEEEEEEETTTCEEEEESCCSCCH---HHHHHHHHHTCEEEEEECSSCCSSSCC-----CHHHHHHHH-CCEEEEECC
T ss_pred ccceEEEEEeCCCCEEEEEcCCCCHH---HHHHHHHHCCCeeeEEEECCCChhhhc-----cHHHHHHhh-CCeEEECcc
Confidence 45667777 23489999997654 2333333332 4679999999999999 999998876 899999986
Q ss_pred hHHhhccCCCCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCCC-------EEEEccccCCCCccccccC---
Q 011237 296 TMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTN-------SLIVGDHCVGQGSAVLDIT--- 365 (490)
Q Consensus 296 ~~~~l~~~~~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~-------vLftGD~l~~~~~~~~~~~--- 365 (490)
+...+.....+.....+.+|+.+.+|+.++++++|||||+||+|+++++.+ +||+||+++.......+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~g~~l~~g~~~l~vi~tPGHT~g~~~~~~~~~~~~~~~~~~lftGD~lf~~~~gr~dl~~~~ 185 (466)
T 3r2u_A 106 SDDTLGYKNMPNHTHFVQHNDDIYVGNIKLKVLHTPGHTPESISFLLTDEGAGAQVPMGLFSGDFIFVGDIGRPDLLEKA 185 (466)
T ss_dssp SCTTTSCCSCCTTCEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEECGGGTCCSCCEEEEETTBCSSCBCCCCCCCGG
T ss_pred hhhhhccccCCCCCEEeCCCCEEEECCEEEEEEECCCCCCCCEEEEEcCCCccCCCceEEEECCcccCCCCCCcCccccc
Confidence 544443222223567899999999999999999999999999999998654 9999999986554444332
Q ss_pred --CCC----CHHHHHHHHHHHHcCCCCE-EEcCCCC
Q 011237 366 --AGG----NMTDYFQSTYKFLELSPHA-LIPMHGR 394 (490)
Q Consensus 366 --~~~----~~~~~~~SL~~L~~l~~~~-ilPgHG~ 394 (490)
..+ +..+|++||++|.+++.++ |+||||.
T Consensus 186 ~~~~g~~~~~~~~~~~Sl~kl~~L~~~~~v~PgHg~ 221 (466)
T 3r2u_A 186 VKVEGSSEIGAKQMFKSIESIKDLPDYIQIWPGHGA 221 (466)
T ss_dssp GCCTTHHHHHHHHHHHHHHHHTTSCTTCEEEESBCT
T ss_pred cccCCCchHHHHHHHHHHHHHhcCCCCeEEECCCCC
Confidence 112 3789999999999999986 9999994
No 37
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii}
Probab=99.89 E-value=1.1e-22 Score=198.29 Aligned_cols=186 Identities=20% Similarity=0.299 Sum_probs=131.7
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccC------
Q 011237 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKD------ 303 (490)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~------ 303 (490)
++.+|||||...... .+ .. ..++++||+||.|.||+| |+..|.+.+ +++|++++.+...+...
T Consensus 29 ~~~iLiD~G~~~~~~-~l---~~-~~~i~~vi~TH~H~DH~g-----g~~~l~~~~-~~~i~~~~~~~~~l~~~~~~~~~ 97 (261)
T 3adr_A 29 KLTVMIDAGVSNSIA-DF---SF-LDKLDYIVLTHLHIDHIG-----LLPELLQVY-KAKVLVKSGFKKYLTSEDGLKKL 97 (261)
T ss_dssp SCEEEECCCCTTCCC-CC---TT-CSCCCEEECSCCSGGGTT-----THHHHHHHS-CCEEEEETTCTHHHHSHHHHHHH
T ss_pred CcEEEEeCCCCCChh-hc---CC-CCCCcEEEECCCCccccC-----CHHHHHHHh-CCeEEECHHHHHHhcCchhHHHH
Confidence 458999999875421 12 11 456779999999999999 999998876 89999987654332210
Q ss_pred ----------------C--CCC---CceecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCCCEEEEccccCCCCccc-
Q 011237 304 ----------------D--WSL---GYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAV- 361 (490)
Q Consensus 304 ----------------~--~~~---~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~- 361 (490)
. .+. .+..+++|+.+++||.+++++++||||+|+++++. +++||+||+++......
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~pGHt~~~~~~~~--~~~lf~GD~~~~~~~~~~ 175 (261)
T 3adr_A 98 NESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNEEFDLGGYRMRLIYTPGHARHHMSVLV--DDFLFTGDSAGAYFNGVV 175 (261)
T ss_dssp HHHHHHHHTHHHHHHCCCCSCCCGGGEEEECSCCEEECSSSEEEEEECTTSCTTCEEEEE--TTEEEEETSSCEEETTEE
T ss_pred HHHHHHHHHHHHHHhcccccCCCccceEecCCCCEEEECCEEEEEEECCCCCCccEEEEE--CCEEEEcCcccccccccc
Confidence 0 111 23568899999999999999999999999999976 69999999976432111
Q ss_pred -cccCCCCCHHHHHHHHHHHHcCCCCEEEcCCCCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 011237 362 -LDITAGGNMTDYFQSTYKFLELSPHALIPMHGRVNLW--PKHMLCGYLKNRRAREAAILQAIENGVETLFDIVAN 434 (490)
Q Consensus 362 -~~~~~~~~~~~~~~SL~~L~~l~~~~ilPgHG~~~~~--~~~~i~~~l~~~~~r~~~il~~l~~g~~T~~ei~~~ 434 (490)
...++..+..+|.+|+++++++++++++||||.+... ..+.+.++..... ..+ . +++ +.|++|++++
T Consensus 176 ~~~~~~~~~~~~~~~sl~~l~~l~~~~v~~~H~~~~~~~~~~~~l~~~~~~~~---~~i-~-~~~-g~t~~ei~~~ 245 (261)
T 3adr_A 176 IPTTPPVIDYKMYMESLKRQIELKPKVVGFAHGGLVSPKIMEEHLKQMLSKEE---IQI-N-VDI-GGVAGEILRK 245 (261)
T ss_dssp ECCCCSCCCHHHHHHHHHHHHHTCCSEEEETTTEEECTHHHHHHHHHHHCSSC---CCC-C-CCC-CHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCccCCcCHHHHHHHHHHHHH---HHH-H-hcC-CCChHHHHHh
Confidence 1222347899999999999999999999999998763 3333333332222 112 2 333 3477777765
No 38
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.88 E-value=1.8e-22 Score=214.43 Aligned_cols=164 Identities=24% Similarity=0.372 Sum_probs=123.4
Q ss_pred cceEEEe--c--CCeEEEcCCCCChHHHHHHHHHHhCC-CceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhh
Q 011237 222 GNHRFVA--Q--GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENT 296 (490)
Q Consensus 222 ~~~~~li--~--g~~iLIDtG~~~~~~~~L~~~~~~~~-~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~ 296 (490)
.+|+|++ . ++++|||||.... .+.+.+++.+ ++++|++||.|.||+| |+..|++.+ +++|++++.+
T Consensus 15 ~~n~yli~~~~~~~~ilID~g~~~~---~~~~~l~~~~~~i~~Il~TH~H~DH~g-----g~~~l~~~~-~~~i~~~~~~ 85 (474)
T 3tp9_A 15 AHASYLVGCQETGEACVIDPARDVE---PYLLTAKREGLRIVAALETHIHADFVS-----GAREMADRA-GAAICVSDEG 85 (474)
T ss_dssp TEEEEEEEETTTCEEEEESCCSCCH---HHHHHHHHHTCEEEEEECSSCCSSSCC-----CHHHHHHHH-CCEEEEECCS
T ss_pred eeEEEEEEECCCCEEEEEcCCCChH---HHHHHHHHcCCeeEEEEcCcCchhhhC-----CHHHHHHHH-CCcEEEcCcc
Confidence 4566666 2 3489999997754 3333333333 4679999999999999 999998874 8999998876
Q ss_pred HHhhccCC-CCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCC-------CEEEEccccCCCCccccccC---
Q 011237 297 MRRIGKDD-WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAST-------NSLIVGDHCVGQGSAVLDIT--- 365 (490)
Q Consensus 297 ~~~l~~~~-~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~-------~vLftGD~l~~~~~~~~~~~--- 365 (490)
...+.... .......+.+|+.+.+|+.++++++|||||+||+++++++. ++||+||++|.......+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~i~tPGHt~g~~~~~~~~~~~~~~~~~~lftGD~lf~~~~g~~dl~~~~ 165 (474)
T 3tp9_A 86 PPEWKSEYVKAYPHRLLKDGDELHFGNVRIVVMHTPGHTPEHVSYLLYDGKTSPDVPMALFSGDFVFVGDVGRPDLLERV 165 (474)
T ss_dssp CGGGCCGGGGGSSEEEECTTCEEEETTEEEEEEECCSSSSSCEEEEEEETTTEEEEEEEEEEETSEETTEECCSCHHHHH
T ss_pred hhhhcccccccccceECCCCCEEEECCEEEEEEECCCCCCCCEEEEEecCCCCCCCceEEEeCCccccCCCCCCCCCccc
Confidence 55543211 11234678999999999999999999999999999998754 69999999986543332221
Q ss_pred --CCCC----HHHHHHHHHHHHcCCCCE-EEcCCCC
Q 011237 366 --AGGN----MTDYFQSTYKFLELSPHA-LIPMHGR 394 (490)
Q Consensus 366 --~~~~----~~~~~~SL~~L~~l~~~~-ilPgHG~ 394 (490)
..++ ..+|++||++|..++.++ |+||||.
T Consensus 166 ~~~~~~~~~~~~~~~~sl~~l~~l~~~~~v~PgHg~ 201 (474)
T 3tp9_A 166 AGESGSSEALARQMFRSLRKFEALPDHVQVLPAHGA 201 (474)
T ss_dssp SCCTTHHHHHHHHHHHHHHHHHTSCTTCEEEESBCT
T ss_pred cCCCccchHHHHHHHHHHHHHhcCCCCcEEECCCCC
Confidence 1222 689999999999999886 7799994
No 39
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Probab=99.86 E-value=5.5e-22 Score=192.75 Aligned_cols=162 Identities=16% Similarity=0.210 Sum_probs=116.7
Q ss_pred ceEEEec--CCeEEEcCCCCCh--------------------------HHHHHHHHHHhCCCceEEEecCCCccccCchh
Q 011237 223 NHRFVAQ--GEALIVDPGCRSE--------------------------FHEELLKVVASLPRKLIVFVTHHHRDHVDGEF 274 (490)
Q Consensus 223 ~~~~li~--g~~iLIDtG~~~~--------------------------~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~ 274 (490)
.|+|+|+ ++.+|||||.... ..+.+.+...+..++++||+||.|.||+|
T Consensus 39 ~~~~lI~~~~~~iLiDtG~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~~I~~VilTH~H~DH~g--- 115 (254)
T 3dha_A 39 VWCYLLETEEGPILVDTGMPESAVNNEGLFNGTFVEGQILPKMTEEDRIVNILKRVGYEPDDLLYIISSHLHFDHAG--- 115 (254)
T ss_dssp EEEEEEEETTEEEEECCCCCGGGBTCTTTTTTSTTTTTEEEEBCGGGSHHHHHHHHTCCGGGCSEEECSCCSHHHHT---
T ss_pred eEEEEEECCCccEEEECCCChhhhcccccccccccccccccccCchhhHHHHHHHcCCCHHHCCEEEcCCChhhcCC---
Confidence 4555553 4589999998632 23444444333445789999999999999
Q ss_pred hccHHHHHHhCCCCEEEeChhhHHhhccCC-------CCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCC--
Q 011237 275 IRGLSIIQKCNPDAILLAHENTMRRIGKDD-------WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAST-- 345 (490)
Q Consensus 275 ~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~-------~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~-- 345 (490)
|+..| ++++|++++.+.+.+.... .......+.+++...+++ ++++++||||+||++++++..
T Consensus 116 --g~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~pGHt~g~~~~~~~~~~~ 187 (254)
T 3dha_A 116 --GNGAF----TNTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEGDYEVVPG--VQLLYTPGHSPGHQSLFIETEQS 187 (254)
T ss_dssp --TGGGC----SSSCEEEEHHHHHHHHHCTTSCGGGSCTTSCEEEECSSEEEETT--EEEEECCSSSTTCEEEEEEETTT
T ss_pred --ChHHC----CCCEEEECHHHHHHhhccccccccccCcccceEEecCCccccCC--EEEEECCCCCCCCEEEEEEeCCC
Confidence 98866 5789999998877653321 111123344566666777 889999999999999999754
Q ss_pred -CEEEEccccCCCCcccccc-CCCCCHHHHHHHHHHHHcCCCC---EEEcCCCCC
Q 011237 346 -NSLIVGDHCVGQGSAVLDI-TAGGNMTDYFQSTYKFLELSPH---ALIPMHGRV 395 (490)
Q Consensus 346 -~vLftGD~l~~~~~~~~~~-~~~~~~~~~~~SL~~L~~l~~~---~ilPgHG~~ 395 (490)
++||+||+++......... .+..+..+|++|+++|.++..+ .|+||||+.
T Consensus 188 ~~vl~~GD~~~~~~~~~~~~~~~~~d~~~~~~sl~~l~~l~~~~~~~v~pgHg~~ 242 (254)
T 3dha_A 188 GSVLLTIDASYTKENFEDEVPFAGFDPELALSSIKRLKEVVKKEKPIIFFGHDIE 242 (254)
T ss_dssp EEEEEEETTCSSHHHHHSCCCCSCSCHHHHHHHHHHHHHHHHHHCCEEEESSCHH
T ss_pred CEEEEEecccchhhhcccCCCcCcCCHHHHHHHHHHHHHHHHhcCCEEEeCCCHH
Confidence 6999999987543222111 2356999999999999998665 899999974
No 40
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A
Probab=99.83 E-value=4.4e-21 Score=188.47 Aligned_cols=161 Identities=20% Similarity=0.269 Sum_probs=112.7
Q ss_pred ceEEEec--CCeEEEcCCCCChH--------------HHHHHHHHHhC----CCceEEEecCCCccccCchhhccHHHHH
Q 011237 223 NHRFVAQ--GEALIVDPGCRSEF--------------HEELLKVVASL----PRKLIVFVTHHHRDHVDGEFIRGLSIIQ 282 (490)
Q Consensus 223 ~~~~li~--g~~iLIDtG~~~~~--------------~~~L~~~~~~~----~~~~~IviTH~H~DH~G~a~~~G~~~l~ 282 (490)
.|+|+|. ++.+|||||..... .+.+.+.+++. .++++||+||.|.||+| |+..|
T Consensus 35 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~VilTH~H~DH~g-----g~~~~- 108 (274)
T 3aj3_A 35 VYSILIEHAEGRFLIDTGYDYDHVMKVLPFEKPIQEKHQTIPGALGLLGLEPRDIDVVVNSHFHFDHCG-----GNKYF- 108 (274)
T ss_dssp EEEEEEEETTEEEEECCCCCHHHHHHHCGGGCCBCCGGGSHHHHHHHTTCCGGGCCEEECSCCSGGGTT-----TGGGC-
T ss_pred EEEEEEEeCCccEEEECCCCcccccCccccCCcccCccccHHHHHHHcCCCHHHCCEEEecCcCcccCC-----chhhC-
Confidence 3455552 34899999987642 12333444443 35679999999999999 98876
Q ss_pred HhCCCCEEEeChhhHHhhccCC-----------C---------------------CCCceecCCCceEEECCEEEEEEeC
Q 011237 283 KCNPDAILLAHENTMRRIGKDD-----------W---------------------SLGYTSVSGSEDICVGGQRLTVVFS 330 (490)
Q Consensus 283 ~~~p~a~I~~~~~~~~~l~~~~-----------~---------------------~~~~~~~~~g~~l~lgg~~l~vi~t 330 (490)
++++|++++.+...+.... + ...+..+++ .++++| +++++++
T Consensus 109 ---~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~g-~~~v~~~ 182 (274)
T 3aj3_A 109 ---PHAKKICHRSEVPQACNPQPFEHLGYSDLSFSAEAAEARGATAQLLEGTTRANSTFEGIDG--DVDLAR-GVKLIST 182 (274)
T ss_dssp ---TTSEEEEETTHHHHHHSCCGGGTTTTCCCTTCHHHHHHHTCGGGCCTTCCSTTSCEEEECS--SEEEET-TEEEEEC
T ss_pred ---CCCEEEECHHHHHHHhCcCCccccccChhhhccccccccccccccccccccCCCCceEcCC--ccccCC-EEEEEEC
Confidence 6899999988776543211 0 112233432 466777 7999999
Q ss_pred CCCCCCCeEEEEC---CCCEEEEccccCCCCccc-ccc-CCCCCHHHHHHHHHHHHcCCCC---EEEcCCCCC
Q 011237 331 PGHTDGHVALLHA---STNSLIVGDHCVGQGSAV-LDI-TAGGNMTDYFQSTYKFLELSPH---ALIPMHGRV 395 (490)
Q Consensus 331 PGHT~g~i~l~~~---~~~vLftGD~l~~~~~~~-~~~-~~~~~~~~~~~SL~~L~~l~~~---~ilPgHG~~ 395 (490)
||||+||++++++ +.++||+||+++...... ... ....+..+|.+|+++|+++..+ .++||||.+
T Consensus 183 pGHt~g~~~~~~~~~~~~~~lf~GD~~~~~~~~~~~~~~~~~~d~~~~~~sl~~l~~l~~~~~~~i~pgH~~~ 255 (274)
T 3aj3_A 183 PGHSIGHYSLLVEFPRRKPILFTIDAAYTQKSLETLCQAAFHIDPVAGVNSMRKVKKLAEDHGAELMYSHDMD 255 (274)
T ss_dssp TTSSTTCEEEEECCSSSCCEEEEETTCSSHHHHHHTCCCSCCSCHHHHHHHHHHHHHHHHHHTCEEEESSCHH
T ss_pred CCCCceeeEEEEECCCCCEEEEEechhhhHHHhcCCCCCceecCHHHHHHHHHHHHHHHhcCCCEEEecCCHH
Confidence 9999999999997 468999999876432111 111 1246889999999999987543 899999975
No 41
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=99.82 E-value=1e-20 Score=187.01 Aligned_cols=166 Identities=15% Similarity=0.124 Sum_probs=115.5
Q ss_pred ceEEEec--CCeEEEcCCCCCh-----------------HHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHH
Q 011237 223 NHRFVAQ--GEALIVDPGCRSE-----------------FHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQK 283 (490)
Q Consensus 223 ~~~~li~--g~~iLIDtG~~~~-----------------~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~ 283 (490)
.|||+|. ++.+|||||.... ..+.+.+...+..++++|++||.|.||+| |+..+.+
T Consensus 48 ~n~~lI~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~Id~IllTH~H~DHig-----g~~~l~~ 122 (280)
T 3esh_A 48 THPILIQTAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMTHMHFDHAA-----GLTDQAG 122 (280)
T ss_dssp CCCEEEECSSCEEESCCTTCSSCSCHHHHHHTTCSSCCCHHHHHHTTTCCTTSCCEEECSCCCHHHHG-----GGSCTTS
T ss_pred EEEEEEEECCEEEEEECCCCCcccccccccccCCcccchHHHHHHHcCCCHHHCCEEEeCCCcccccC-----ccccccc
Confidence 3445442 4699999997652 23333333333446779999999999999 9988876
Q ss_pred --hCCCCEEEeChhhHHhhccCCCCC--------------CceecCCCceEEECCEEEEEEeCCCCCCCCeEEEEC--CC
Q 011237 284 --CNPDAILLAHENTMRRIGKDDWSL--------------GYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--ST 345 (490)
Q Consensus 284 --~~p~a~I~~~~~~~~~l~~~~~~~--------------~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~--~~ 345 (490)
.+|+++||+++.+...+....... ....+.++.. +.+ .++++++||||+||++++++ +.
T Consensus 123 ~~~fp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~-gi~~~~~pGHt~g~~~~~i~~~~~ 199 (280)
T 3esh_A 123 HAIFENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNKLILFEKHFE--PVP-GIKMQHSGGHSFGHTIITIESQGD 199 (280)
T ss_dssp CCSSTTCEEEEEHHHHHHHHSCCTTGGGTSCGGGCCGGGGGEEEESSEEC--SST-TEEEEECCSSSTTCEEEEEEETTE
T ss_pred ccCCCCCEEEECHHHHHHhhCcccccccchhhhhhhhhhheEEEeCCCCe--EcC-CEEEEEcCCCCcccEEEEEEECCc
Confidence 678999999999887765432110 1122333332 333 38889999999999999995 45
Q ss_pred CEEEEccccCCCCcccccc--CCCCCHHHHHHHHHHHHcC---CCCEEEcCCCCCC
Q 011237 346 NSLIVGDHCVGQGSAVLDI--TAGGNMTDYFQSTYKFLEL---SPHALIPMHGRVN 396 (490)
Q Consensus 346 ~vLftGD~l~~~~~~~~~~--~~~~~~~~~~~SL~~L~~l---~~~~ilPgHG~~~ 396 (490)
++||+||+++.......+. .++.+..+..+|.+++.++ +...|+||||+..
T Consensus 200 ~vlftGD~~~~~~~~~~d~~~~~d~d~~~~~~s~~~ll~~~~~~~~~v~pgH~~~~ 255 (280)
T 3esh_A 200 KAVHMGDIFPTTAHKNPLWVTAYDDYPMQSIREKERMIPYFIQQQYWFLFYHDENY 255 (280)
T ss_dssp EEEECGGGSCSGGGCSTTCCCTTCSCHHHHHHHHHHHHHHHHHTTCEEECSSCSSE
T ss_pred EEEEEEccCCchhhcCCCccccccCCHHHHHHHHHHHHHHHHhCCCEEEEEccCCC
Confidence 7999999997654333222 2355788888898887764 5567999999864
No 42
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11
Probab=99.82 E-value=3.9e-21 Score=183.62 Aligned_cols=155 Identities=20% Similarity=0.207 Sum_probs=108.9
Q ss_pred ceEEEec--CCeEEEcCCCCChH---HHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhH
Q 011237 223 NHRFVAQ--GEALIVDPGCRSEF---HEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTM 297 (490)
Q Consensus 223 ~~~~li~--g~~iLIDtG~~~~~---~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~ 297 (490)
+|+|++. ++.+|||||..... .+.+.+...+..++++|++||.|.||+| |+..|. +++||+++...
T Consensus 35 ~n~~li~~~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~ViiTH~H~DH~g-----g~~~~~----~~~v~~~~~~~ 105 (221)
T 1ztc_A 35 STVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIF-----NSVLFE----NATFYVHEVYK 105 (221)
T ss_dssp CCEEEEEETTEEEEECCCCGGGHHHHHHHHHHHTCCGGGCCEEECSCCCHHHHG-----GGGGCT----TCEEEEEGGGG
T ss_pred eEEEEEEeCCeEEEEECCCCcchHHHHHHHHHcCCCHHHCcEEEEcCCccccCC-----chhhCC----CCEEEEeHHHh
Confidence 4445442 35899999986332 2233332222335679999999999999 987763 78999987621
Q ss_pred Hh-hccC------------CCCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEECCC---CEEEEccccCCCCccc
Q 011237 298 RR-IGKD------------DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAST---NSLIVGDHCVGQGSAV 361 (490)
Q Consensus 298 ~~-l~~~------------~~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~---~vLftGD~l~~~~~~~ 361 (490)
.. +... .....+..+++|+.+. ++ .++++++||||+|+++++++.. +++|+||+++....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-~~-~~~v~~~pGHt~g~~~~~~~~~~~~~vlftGD~~~~~~~-- 181 (221)
T 1ztc_A 106 TKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLF-DE-KVKVFHTPWHAREHLSFLLDTENAGRVLITGDITPNRLS-- 181 (221)
T ss_dssp GSCGGGGCHHHHHHHHHHHHTCCSEEEECSCCEET-TT-TEEEEECCSSSTTCEEEEEEETTTEEEEECGGGSCSHHH--
T ss_pred hhhhhhhccchhhhhhhccccccceEEeCCCCEEE-CC-eEEEEEcCCCCcccEEEEEEcCCCCeEEEEeCccccccc--
Confidence 10 0000 0012345677888775 43 6999999999999999998754 79999999864432
Q ss_pred cccCCCCCHHHHHHH------HHHHHcCCCCEEEcCCCCCCC
Q 011237 362 LDITAGGNMTDYFQS------TYKFLELSPHALIPMHGRVNL 397 (490)
Q Consensus 362 ~~~~~~~~~~~~~~S------L~~L~~l~~~~ilPgHG~~~~ 397 (490)
..+..+|++| |++ +++ +++++||||+++.
T Consensus 182 -----~~d~~~~~~s~~~~~~l~~-~~l-~~~i~pgHg~~~~ 216 (221)
T 1ztc_A 182 -----YYDIIKGYGSVQVKNFLDR-VGR-IDLLVFPHDAPLK 216 (221)
T ss_dssp -----HHHHHHTCSCHHHHHHHHH-HCC-CSEEECSSSCCBC
T ss_pred -----CCCHHHHHhhhHhHHHHHh-ccC-CCEEEeCCCchHh
Confidence 2467888888 999 888 8999999999864
No 43
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Probab=99.82 E-value=3.9e-20 Score=181.76 Aligned_cols=156 Identities=18% Similarity=0.263 Sum_probs=112.1
Q ss_pred CCeEEEcCCCCChH-------------------------HHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHh
Q 011237 230 GEALIVDPGCRSEF-------------------------HEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKC 284 (490)
Q Consensus 230 g~~iLIDtG~~~~~-------------------------~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~ 284 (490)
++.+|||||..... .+.+.+......++++||+||.|.||+| |+..|
T Consensus 52 ~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~VilTH~H~DH~g-----g~~~~--- 123 (276)
T 2r2d_A 52 DATVLYDTGCHPECMGTNGRWPAQSQLNAPYIGASECNLPERLRQLGLSPDDISTVVLSHLHNDHAG-----CVEYF--- 123 (276)
T ss_dssp SCEEEECCCSCTTCSSTTCSSCHHHHHHSCBCCCTTCSHHHHHHHTTCCGGGCSEEECSCCSTTTST-----TGGGC---
T ss_pred CCCEEEECCCCcccccccccccHhHHhhcCCCCChhhCHHHHHHHcCCCHHHCCEEEecCcccccCC-----ChhhC---
Confidence 45899999977542 2233333223335779999999999999 99876
Q ss_pred CCCCEEEeChhhHHhhccC--------CC-----------CCCceecC-CCceEEECCEEEEEEeC-CCCCCCCeEEEEC
Q 011237 285 NPDAILLAHENTMRRIGKD--------DW-----------SLGYTSVS-GSEDICVGGQRLTVVFS-PGHTDGHVALLHA 343 (490)
Q Consensus 285 ~p~a~I~~~~~~~~~l~~~--------~~-----------~~~~~~~~-~g~~l~lgg~~l~vi~t-PGHT~g~i~l~~~ 343 (490)
++++|++++.+...+... .+ ...+..++ +|+.+++++ .++++++ ||||+||++++++
T Consensus 124 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~-~~~v~~~~pgHt~g~~~~~~~ 201 (276)
T 2r2d_A 124 -GKSRLIAHEDEFATAVRYFATGDHSSPYIVKDIEAWLATPRNWDLVGRDERERELAP-GVNLLNFGTGHASGMLGLAVR 201 (276)
T ss_dssp -SSSEEEEEHHHHHHHHHHHHTTCCSSSSCHHHHHHHTTSCCCEEEECTTCCEEEEET-TEEEEEEESSSSSSEEEEEEE
T ss_pred -CCCEEEECHHHHHHHhccccccccccccchHHhhhhccccccceeccCCCceeEecC-CEEEEeCCCCCCceeEEEEEE
Confidence 689999998876644211 00 12345566 488899874 2899999 9999999999996
Q ss_pred --C-CCEEEEccccCCCCc--c-ccccCCCCCHHHHHHHHHHHHcC---CCCEEEcCCCCC
Q 011237 344 --S-TNSLIVGDHCVGQGS--A-VLDITAGGNMTDYFQSTYKFLEL---SPHALIPMHGRV 395 (490)
Q Consensus 344 --~-~~vLftGD~l~~~~~--~-~~~~~~~~~~~~~~~SL~~L~~l---~~~~ilPgHG~~ 395 (490)
+ .+++|+||+++.... . ........+..+|.+|++++.++ ....++||||+.
T Consensus 202 ~~~~~~vl~~GD~~~~~~~~~~~~~~~~~~~d~~~~~~sl~~l~~l~~~~~~~v~~~H~~~ 262 (276)
T 2r2d_A 202 LEKQPGFLLVSDACYTATNYGPPARRAGVLHDTIGYDRTVSHIRQYAESRSLTVLFGHDRE 262 (276)
T ss_dssp CSSSCEEEEEETTSCCHHHHSSSCCCCSSCSCHHHHHHHHHHHHHHHHHTTCEEEESSCHH
T ss_pred cCCCceEEEEechhhhHHHhcccCCCCccccCHHHHHHHHHHHHHHHhcCCCEEEeCCCHH
Confidence 3 689999999864321 1 11112345889999999999988 466999999864
No 44
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5
Probab=99.81 E-value=1.2e-20 Score=191.32 Aligned_cols=166 Identities=18% Similarity=0.246 Sum_probs=118.3
Q ss_pred cceEEEec--CCeEEEcCCCCC-------hHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHH-HHHhCCCCEEE
Q 011237 222 GNHRFVAQ--GEALIVDPGCRS-------EFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSI-IQKCNPDAILL 291 (490)
Q Consensus 222 ~~~~~li~--g~~iLIDtG~~~-------~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~-l~~~~p~a~I~ 291 (490)
..|+|+|. ++.+|||||.+. ...+.+.+...+..++++||+||.|.||+| |+.. +...+++++||
T Consensus 96 ~~n~~LI~~~~~~iLIDtG~~~~~~~~~~~l~~~L~~~Gi~~~~Id~VilTH~H~DHig-----gl~~~~~~~fp~a~v~ 170 (331)
T 1p9e_A 96 SVTGYLVNTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVG-----GLMVGEQLAFPNAVVR 170 (331)
T ss_dssp EEEEEEEECSSCEEEECCCCTTSSCTTCCCHHHHHHHTTCCGGGCCEEECSCCCHHHHG-----GGEETTEESSTTCEEE
T ss_pred EEEEEEEEECCEEEEEECCCCCcCCcchhHHHHHHHHcCCCHHHCCEEEeCCcccccCC-----cccccccccCCCCEEE
Confidence 45677774 358999999873 234444444333446789999999999999 8873 33357899999
Q ss_pred eChhhHHhhccCC----C---------------------CCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEEC--C
Q 011237 292 AHENTMRRIGKDD----W---------------------SLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--S 344 (490)
Q Consensus 292 ~~~~~~~~l~~~~----~---------------------~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~--~ 344 (490)
+++.+.+.+.... . ...+..+++|+.+.. | ++++++||||+||++++++ +
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~-g--i~vi~tpGHtpG~~~~~i~~~~ 247 (331)
T 1p9e_A 171 ADQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFSGNTDLVP-G--IKALASHGHTPGHTTYVVESQG 247 (331)
T ss_dssp CBHHHHHHHSCHHHHTTCSSTTSCHHHHHHHHHHHHHHHTTCBCCBCSSEECST-T--EEEEECTTSSTTCEEEEEEETT
T ss_pred ECHHHHHHHhCchhhccCchhhhhHHHHHHHHHhhhhcccCceEEeCCCCEEcc-c--EEEEEcCCCChhCEEEEEEECC
Confidence 9998877553210 0 112345667766653 3 8999999999999999987 5
Q ss_pred CCEEEEccccCCCC----ccccccCCCCCHHHHHHHHHHHHcC---CCCEEEcCCCCC
Q 011237 345 TNSLIVGDHCVGQG----SAVLDITAGGNMTDYFQSTYKFLEL---SPHALIPMHGRV 395 (490)
Q Consensus 345 ~~vLftGD~l~~~~----~~~~~~~~~~~~~~~~~SL~~L~~l---~~~~ilPgHG~~ 395 (490)
++++|+||+++... .+.+...++.+..++++|++++.+. +...|+|||++.
T Consensus 248 ~~vlf~GD~~~~~~~~~~~p~~~~~~d~d~~~~~~s~~~ll~~~~~~~~~v~~~H~~~ 305 (331)
T 1p9e_A 248 QKLALLGDLILVAAVQFDDPSVTTQLDSDSKSVAVERKKAFADAAKGGYLIAASHLSF 305 (331)
T ss_dssp EEEEECTTSCCCHHHHTTCTTCCBTTCSSHHHHHHHHHHHHHHHHHHTCEEECTTSST
T ss_pred cEEEEEECccCcchhcccCCCceecccCCHHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 68999999986431 1222223467999999999988764 456899999974
No 45
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9
Probab=99.59 E-value=6.1e-15 Score=144.27 Aligned_cols=168 Identities=14% Similarity=0.093 Sum_probs=116.2
Q ss_pred cceEEEec--CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHh----------CCCCE
Q 011237 222 GNHRFVAQ--GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKC----------NPDAI 289 (490)
Q Consensus 222 ~~~~~li~--g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~----------~p~a~ 289 (490)
++++|++. +..+|||||.+.. .++.+. ....++++||+||.|.||++ |+..+.+. .++++
T Consensus 42 ~~~~~li~~~~~~iLiD~G~~~~--~~l~~~-~~~~~i~~v~iTH~H~DH~~-----gl~~l~~~~~~~~~~~~~~~~~~ 113 (268)
T 1zkp_A 42 ATSGYLFEHDGFRLLVDCGSGVL--AQLQKY-ITPSDIDAVVLSHYHHDHVA-----DIGVLQYARLITSATKGQLPELP 113 (268)
T ss_dssp CBSEEEEEETTEEEEECCCTTHH--HHHTTT-CCGGGCCEEECSCCCHHHHT-----THHHHHHHHHHHHHHHCCCCCEE
T ss_pred CccEEEEEECCcEEEEECCHHHH--HHHHHh-CCcccCCEEEEecCCchhhC-----CHHHHHHHHHhcccccCCCCceE
Confidence 45666663 4589999998632 333333 23445679999999999999 99887653 24689
Q ss_pred EEeChhhHHhhccCCCC--CCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEECC--CCEEEEccccCCCCcc-----
Q 011237 290 LLAHENTMRRIGKDDWS--LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAS--TNSLIVGDHCVGQGSA----- 360 (490)
Q Consensus 290 I~~~~~~~~~l~~~~~~--~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~--~~vLftGD~l~~~~~~----- 360 (490)
||+++.+...+....+. .....+.+|+.+++|+.+++++++| |++|+++++++. .+++|+||+.+.....
T Consensus 114 i~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~g~~~v~~~~~~-H~~~~~~~~i~~~~~~i~~~GD~~~~~~~~~~~~~ 192 (268)
T 1zkp_A 114 IYGHTFDENGFHSLTHEPHTKGIPYNPEETLQIGPFSISFLKTV-HPVTCFAMRITAGNDIVVYSADSSYIPEFIPFTKD 192 (268)
T ss_dssp EEECSSSHHHHHTTCBTTTEEEEECCTTSCEEETTEEEEEEECC-SSSCCEEEEEEETTEEEEECCSCCCCTTHHHHHTT
T ss_pred EEeCccHHHHHHhcccCCccceEEecCCCeEEECCEEEEEEECC-CCCCceEEEEEECCeEEEEeCCCCCCHHHHHHHcC
Confidence 99998887776553321 2345688899999999999999999 999999998853 5799999998643210
Q ss_pred ----ccccCCCC---C----HHHHHHHHHHHHcCCCCEEEcCCCCCCCC
Q 011237 361 ----VLDITAGG---N----MTDYFQSTYKFLELSPHALIPMHGRVNLW 398 (490)
Q Consensus 361 ----~~~~~~~~---~----~~~~~~SL~~L~~l~~~~ilPgHG~~~~~ 398 (490)
..+..... . -..+.++++.+++.+++.+++.|-....+
T Consensus 193 ~d~li~e~~~~~~~~~~~~~H~~~~~a~~~~~~~~~~~lil~H~~~~~~ 241 (268)
T 1zkp_A 193 ADLFICECNMYAHQEAAKAGHMNSTEVASIAKDANVKELLLTHLPHTGN 241 (268)
T ss_dssp CSEEEEECCBCTTSCCGGGTCCBHHHHHHHHHHTTCSEEEEESBCSSSC
T ss_pred CCEEEEECCCCccccccCCCCCCHHHHHHHHHHcCCCEEEEECCCCCCC
Confidence 01110000 0 11234555666678899999999877543
No 46
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=99.53 E-value=2.2e-14 Score=154.89 Aligned_cols=131 Identities=13% Similarity=0.213 Sum_probs=98.8
Q ss_pred CcceEEEe--cCCeEEEcCCCCChHHH---------HHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCE
Q 011237 221 CGNHRFVA--QGEALIVDPGCRSEFHE---------ELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAI 289 (490)
Q Consensus 221 ~~~~~~li--~g~~iLIDtG~~~~~~~---------~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~ 289 (490)
.+.|+|++ .++.+|||||....... .+..+.....++++||+||.|.||+| |+..+.+.+ +++
T Consensus 20 iG~n~~li~~~~~~iLID~G~~~~~~~~~g~d~iip~~~~l~~~~~~Id~I~lTH~H~DHig-----gl~~l~~~~-~~p 93 (555)
T 3zq4_A 20 IGKNTYAVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEDKIKGLFITHGHEDHIG-----GIPYLLRQV-NIP 93 (555)
T ss_dssp SSCCEEEEEETTEEEEEEECCBCCCTTSTTCSEEEECCHHHHTTTTTEEEEEESCCCHHHHT-----THHHHHTTC-CCC
T ss_pred cCCEEEEEEECCeEEEEeCCCCCCccccccccccccCHHHHhcCccCCCEEEECCCchhhhC-----CHHHHHHhc-Cce
Confidence 34556665 34589999997422100 12333345567789999999999999 999998875 789
Q ss_pred EEeChhhHHhhccC----C--CCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEE--CCCCEEEEccccCCC
Q 011237 290 LLAHENTMRRIGKD----D--WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLH--ASTNSLIVGDHCVGQ 357 (490)
Q Consensus 290 I~~~~~~~~~l~~~----~--~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~--~~~~vLftGD~l~~~ 357 (490)
||+++.+...+... . ....+..+..|+.+.+|+.+++++++++|++|++++++ ++.+++|+||+.+..
T Consensus 94 Iy~t~~t~~ll~~~l~~~~~~~~~~~~~v~~g~~~~ig~~~v~~~~~~H~~pgs~~~~i~~~~~~il~tGD~~~~~ 169 (555)
T 3zq4_A 94 VYGGKLAIGLLRNKLEEHGLLRQTKLNIIGEDDIVKFRKTAVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDF 169 (555)
T ss_dssp EEECHHHHHHHHHHHHHHSTTTTCCEEECCTTCCEEETTEEEEEEEEBCSSSSEEEEEEEETTEEEEECCSCBCCS
T ss_pred EEECHHHHHHHHHHHHHcCccCCCceEEeCCCCEEEECCEEEEEEeCCCCCcCcEEEEEEECCcEEEEeCCCCCCC
Confidence 99999887655421 1 12356788999999999999999999999999988776 667899999998643
No 47
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.51 E-value=1.3e-14 Score=139.47 Aligned_cols=83 Identities=11% Similarity=0.068 Sum_probs=72.0
Q ss_pred hhhHHHHHHHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCC-----ccccccccccCCHHHHHHHHHccC
Q 011237 78 IESALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 78 ~~~~~~~~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~-----q~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
...+|.++|+++|+.++.+.|.+|+|||||+ +.+|||||+||++.+|.. +++|...+.|++|+++++.+.+++
T Consensus 116 ~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~--~~~rRfdT~FFla~lpq~~~v~~d~~E~~~~~W~~p~eal~~~~~G~ 193 (232)
T 3qsj_A 116 GGDALSAWLSARGLAFDLGLLRRIGRFVTPP--TQPVRFDTRFFLCVGQHLGEPRLHGAELDAALWTPARDMLTRIQSGE 193 (232)
T ss_dssp CTTHHHHHHHTTTCEEBGGGCEEEEEEECCT--TSSSEEEEEEEEEECSSCCCCCCCSSSEEEEEEEEHHHHHHHHHTTS
T ss_pred CchhHHHHHHHCCCccChhhceeeEEEcCCc--CCceeEEEEEEEEECCCCCCCCCCCCceEEEEEEcHHHHHHHHHcCC
Confidence 4468999999999999999999999999999 889999999999999843 247999999999999999998774
Q ss_pred CCCCccChhhhhh
Q 011237 153 PSTDRVGPLVVIG 165 (490)
Q Consensus 153 ~~~~~~~~~~~ag 165 (490)
..+.|++..-
T Consensus 194 ---i~L~pPT~~~ 203 (232)
T 3qsj_A 194 ---LPAVRPTIAV 203 (232)
T ss_dssp ---SCCCHHHHHH
T ss_pred ---ceechhHHHH
Confidence 4566666553
No 48
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=99.47 E-value=1.7e-13 Score=148.41 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=97.5
Q ss_pred cceEEEec--CCeEEEcCCCCChHH---------HHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCC----
Q 011237 222 GNHRFVAQ--GEALIVDPGCRSEFH---------EELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNP---- 286 (490)
Q Consensus 222 ~~~~~li~--g~~iLIDtG~~~~~~---------~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p---- 286 (490)
++|+|+++ ++.+|||||...... ..+..+.....++++||+||.|.||+| |+..+.+.++
T Consensus 29 g~n~~li~~~~~~iLID~G~~~~~~~~~g~~~~~p~~~~l~~~~~~Id~I~iTH~H~DHig-----gl~~L~~~~~~~~~ 103 (562)
T 3bk2_A 29 GKNITVFRFRDEIFVLDGGLAFPEEGMPGVDLLIPRVDYLIEHRHKIKAWVLTHGHEDHIG-----GLPFLLPMIFGKES 103 (562)
T ss_dssp SCCEEEEEETTEEEEECCCCBCCCTTSTTCCEEEECCHHHHHTGGGEEEEECCCCCHHHHT-----THHHHHHHHHCSCC
T ss_pred CCCEEEEEECCeEEEEECCCCCCccccccccccccchhhhhcCcccCcEEEECCCChHHhC-----CHHHHHHhhccccC
Confidence 45666663 458999999642100 012223334556789999999999999 9999987654
Q ss_pred CCEEEeChhhHHhhcc----CCC---CCCceecCCCceEEECC-EEEEEEeCCCCCCCCeEEEE--CCCCEEEEccccCC
Q 011237 287 DAILLAHENTMRRIGK----DDW---SLGYTSVSGSEDICVGG-QRLTVVFSPGHTDGHVALLH--ASTNSLIVGDHCVG 356 (490)
Q Consensus 287 ~a~I~~~~~~~~~l~~----~~~---~~~~~~~~~g~~l~lgg-~~l~vi~tPGHT~g~i~l~~--~~~~vLftGD~l~~ 356 (490)
+++||+++.+...+.. ... ...+..+..|+.+++|+ .+++++++++|++|++++++ ++.+++|+||+.+.
T Consensus 104 ~~pIy~~~~t~~~l~~~l~~~~~~~~~~~~~~v~~g~~~~lg~~~~v~~~~~~H~~~gs~~~~i~~~~~~il~tGD~~~~ 183 (562)
T 3bk2_A 104 PVPIYGARLTLGLLRGKLEEFGLRPGAFNLKEISPDDRIQVGRYFTLDLFRMTHSIPDNSGVVIRTPIGTIVHTGDFKLD 183 (562)
T ss_dssp CSEEEEEHHHHHHHHHHHHHTTCCSTTSEEEEECTTCEEEETTTEEEEEEECCCSSSSCEEEEEEETTEEEEECCSCCCC
T ss_pred CceEEeCHHHHHHHHHHHHHcCCCcCCceEEEECCCCEEEeCCCEEEEEEECCCCCcccEEEEEEECCeEEEEcCCCCCC
Confidence 7899999988765532 111 23456788999999999 99999999999999999886 56789999999764
Q ss_pred C
Q 011237 357 Q 357 (490)
Q Consensus 357 ~ 357 (490)
.
T Consensus 184 ~ 184 (562)
T 3bk2_A 184 P 184 (562)
T ss_dssp S
T ss_pred C
Confidence 3
No 49
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=99.44 E-value=4.9e-13 Score=140.14 Aligned_cols=166 Identities=16% Similarity=0.143 Sum_probs=110.3
Q ss_pred cceEEEe--cCCeEEEcCCCCChHH--HHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhH
Q 011237 222 GNHRFVA--QGEALIVDPGCRSEFH--EELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTM 297 (490)
Q Consensus 222 ~~~~~li--~g~~iLIDtG~~~~~~--~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~ 297 (490)
+++||++ .+..+|||||...... ..+........++++|++||.|.||+| |+..+.+...+++||+++.+.
T Consensus 13 g~s~~li~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~Id~VllTH~H~DH~g-----glp~l~~~~~~~~Iy~t~~t~ 87 (431)
T 3iek_A 13 TGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVG-----RLPKLFREGYRGPVYATRATV 87 (431)
T ss_dssp SCCCEEEEETTEEEEECCCCCCGGGGGGGGSCCSSCGGGCCEEECSCCCHHHHT-----THHHHHHTTCCSCEEECHHHH
T ss_pred CCcEEEEEECCeEEEEeCCCCcchhhccchhhcCCCcccCCEEEECCCChHHhc-----cHHHHHHcCCCCeEEEcHHHH
Confidence 3456666 3458999999854320 001111112235679999999999999 999998876789999999877
Q ss_pred Hhhcc-----------CCCC--------CCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEEC--CCCEEEEccccCC
Q 011237 298 RRIGK-----------DDWS--------LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--STNSLIVGDHCVG 356 (490)
Q Consensus 298 ~~l~~-----------~~~~--------~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~--~~~vLftGD~l~~ 356 (490)
..+.. ..+. ..+..+..++.+++++.+++++++ ||++|++++++. +.+++|+||+-..
T Consensus 88 ~l~~~~l~d~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~l~g~~v~~~~a-gH~~Gs~~~~i~~~~~~ilfsGD~~~~ 166 (431)
T 3iek_A 88 LLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQA-GHLPGSAFVVAQGEGRTLVYSGDLGNR 166 (431)
T ss_dssp HHHHHHHHHHHHHCSSCSSCHHHHHHHHHTEEECCTTCCEEETTEEEEEEEC-CSSTTCEEEEEEETTEEEEECCCCCCT
T ss_pred HHHHHHHHHHHhhcccCCCCHHHHHHHHhccEEcCCCCeEEeCCEEEEEEeC-CCCcCceEEEEEECCEEEEEeCCCCCC
Confidence 65431 0011 135678889999999988888765 999999999885 3469999998643
Q ss_pred CCccc--------c-----ccC----CCCC----HHHHHHHHHHHHcCCCCEEEcCCC
Q 011237 357 QGSAV--------L-----DIT----AGGN----MTDYFQSTYKFLELSPHALIPMHG 393 (490)
Q Consensus 357 ~~~~~--------~-----~~~----~~~~----~~~~~~SL~~L~~l~~~~ilPgHG 393 (490)
..... . +.. ...+ ...+.+++++..+....+++|.+-
T Consensus 167 ~~~~l~~~~~~~~~D~LI~EsTy~~~~h~~~~~~~~~l~~~i~~~~~~gg~vlIp~fa 224 (431)
T 3iek_A 167 EKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFA 224 (431)
T ss_dssp TSSSSCCCCBCCCCSEEEEECTTTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCT
T ss_pred CCcccCCccccCCccEEEEEcccCCcCCCChHHHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 21110 0 000 0012 345556666666667788999886
No 50
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.44 E-value=9.9e-13 Score=144.33 Aligned_cols=166 Identities=19% Similarity=0.174 Sum_probs=110.2
Q ss_pred cceEEEec--CCeEEEcCCCCChH---HHHHHHH---HHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeC
Q 011237 222 GNHRFVAQ--GEALIVDPGCRSEF---HEELLKV---VASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAH 293 (490)
Q Consensus 222 ~~~~~li~--g~~iLIDtG~~~~~---~~~L~~~---~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~ 293 (490)
+.+||++. +..+|||||..... ...+..+ .....++++||+||.|.||+| |+..+.+...+++||++
T Consensus 192 g~s~~lI~~~~~~ILID~G~~~~~~~~~~~~~~l~~l~~~~~~Id~VlLTH~H~DHiG-----glp~L~~~~~~~~Iy~t 266 (636)
T 2ycb_A 192 GRSCLYLQTPNSRVLLDCGVNVAGGDDKNSYPYLNVPEFTLDSLDAVIITHAHLDHSG-----FLPYLYHYGYDGPVYCT 266 (636)
T ss_dssp SCCEEEEECSSCEEEEEECCCCSSCCHHHHSCCTTSTTCCTTTCCEEECSSSSHHHHT-----THHHHHHTTCCSCEEEC
T ss_pred CCCEEEEEECCeEEEEeCCCCcccccchhhccccccccCCcccCcEEEECCCChHHhc-----CHHHHHhcCCCCeEEEc
Confidence 45666663 45899999987542 1111111 123456779999999999999 99999874457899999
Q ss_pred hhhHHhhcc---------------CCCC--------CCceecCCCceEEE-CCEEEEEEeCCCCCCCCeEEEEC--CC--
Q 011237 294 ENTMRRIGK---------------DDWS--------LGYTSVSGSEDICV-GGQRLTVVFSPGHTDGHVALLHA--ST-- 345 (490)
Q Consensus 294 ~~~~~~l~~---------------~~~~--------~~~~~~~~g~~l~l-gg~~l~vi~tPGHT~g~i~l~~~--~~-- 345 (490)
+.+...+.. ..+. ..+..+..|+.+++ +|.++++ ..+||++|++++++. +.
T Consensus 267 ~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~l~ggi~v~~-~~~gH~~Gs~~~~i~~~~~~~ 345 (636)
T 2ycb_A 267 APTRDLMTLLQLDHIDIAHREDEPLPFNVKHVKKSVKHTITLDYGEVTDIAPDIRLTL-HNAGHILGSAMAHLHIGDGQH 345 (636)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHTEEECCTTCCEEEETTEEEEE-EECCSSTTCEEEEEEETTTTT
T ss_pred chHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHhceEEeCCCCEEEecCCeEEEE-eCCCCCCCcEEEEEEECCCeE
Confidence 887654321 0110 02356888999999 9988887 478999999999875 55
Q ss_pred CEEEEccccCCCC---------cccc-----ccCC------CCC----HHHHHHHHHHHHcCCCCEEEcCCC
Q 011237 346 NSLIVGDHCVGQG---------SAVL-----DITA------GGN----MTDYFQSTYKFLELSPHALIPMHG 393 (490)
Q Consensus 346 ~vLftGD~l~~~~---------~~~~-----~~~~------~~~----~~~~~~SL~~L~~l~~~~ilPgHG 393 (490)
+++|+||+-.... .... +..+ ..+ ...+.+.+++..+.+..+++|+|.
T Consensus 346 ~ilftGD~~~~~~~ll~~~~~~~~~~D~LI~EsT~~~~~~~h~s~~~~~~~l~~~i~~~~~~~g~vlIp~fa 417 (636)
T 2ycb_A 346 NMVYTGDFKYEQSRLLEAAANRFPRIETLVMESTYGGHEDVQPSRNRAEKELVKTIYSTLRRGGKILIPVFA 417 (636)
T ss_dssp CEEECCSCCSSCCSSSCCCCCCCSCCSEEEEECTTCSGGGCCCCHHHHHHHHHHHHHHHHHHTCCEEEECCT
T ss_pred EEEEECCCCCCcccccCCcccCCCCCeEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 8999999843211 0000 0001 111 234556666665568899999996
No 51
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=99.41 E-value=3.7e-13 Score=147.78 Aligned_cols=165 Identities=17% Similarity=0.128 Sum_probs=102.8
Q ss_pred ceEEEec--CCeEEEcCCCCChH----HHHHHHHHH-hCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChh
Q 011237 223 NHRFVAQ--GEALIVDPGCRSEF----HEELLKVVA-SLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHEN 295 (490)
Q Consensus 223 ~~~~li~--g~~iLIDtG~~~~~----~~~L~~~~~-~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~ 295 (490)
++||++. +..+|||||..... ...+..... ...++++||+||.|.||+| |+..+.+...+++||+++.
T Consensus 197 ~s~~LI~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~~~~~Id~VllTH~H~DHiG-----gl~~L~~~~~~~~Iy~t~~ 271 (640)
T 2xr1_A 197 RSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIVTHAHLDHQG-----LVPLLFKYGYEGPVYCTPP 271 (640)
T ss_dssp CCEEEEECSSCEEEECCCCBCSSCSSCCCCTTSTTTCSGGGCCEEECCSSCHHHHT-----THHHHHHTTCCSCEEECHH
T ss_pred CcEEEEEECCeEEEEeCCCCccccccccccccccccCCcccCcEEEECCCChhhhc-----cHHHHHhcCCCCeEEECHH
Confidence 4566663 45899999987431 011110001 3345679999999999999 9999987445789999988
Q ss_pred hHHhhcc---------------CCCC--------CCceecCCCceEEE-CCEEEEEEeCCCCCCCCeEEEEC--CC--CE
Q 011237 296 TMRRIGK---------------DDWS--------LGYTSVSGSEDICV-GGQRLTVVFSPGHTDGHVALLHA--ST--NS 347 (490)
Q Consensus 296 ~~~~l~~---------------~~~~--------~~~~~~~~g~~l~l-gg~~l~vi~tPGHT~g~i~l~~~--~~--~v 347 (490)
+...+.. ..+. ..+..+..|+.+++ ++.++++ ..+||++|++++++. +. ++
T Consensus 272 t~~ll~~~l~d~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~g~~i~l~gg~~v~~-~~~GH~~Gs~~~~i~~~~~~~~i 350 (640)
T 2xr1_A 272 TRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTF-HNAGHILGSAISHFHIGDGLHNV 350 (640)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEECCTTCCEEEETTEEEEE-EECSSSTTCEEEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHhceEEeCCCCEEEecCCEEEEE-EcCCCCcCcEEEEEEECCceEEE
Confidence 7654321 0111 12456888999999 9988887 569999999999875 56 79
Q ss_pred EEEccccCCCC-----c--c-------ccccCC------CCC----HHHHHHHHHHHHcCCCCEEEcCCC
Q 011237 348 LIVGDHCVGQG-----S--A-------VLDITA------GGN----MTDYFQSTYKFLELSPHALIPMHG 393 (490)
Q Consensus 348 LftGD~l~~~~-----~--~-------~~~~~~------~~~----~~~~~~SL~~L~~l~~~~ilPgHG 393 (490)
+|+||+-.... . . .++..+ ..+ ..++.+++++..+.+..+++|+|.
T Consensus 351 lftGD~~~~~~~ll~~~~~~~~~~DvLi~EsT~g~~~~~h~s~~~~~~~l~~~i~~~~~~~g~vlIp~fa 420 (640)
T 2xr1_A 351 VFTGDYKYEKTRLFDPAVNKFPRVETVISEATYGNANAFQPALKDAEKHLQMVVKNTIERGGIAVIPAFA 420 (640)
T ss_dssp EECCSCCSSCCSSCCCCCCBCSCCSEEEEECTTCSTTCCCCCHHHHHHHHHHHC--------CEEEECCT
T ss_pred EEECCCCCCCccccccccccCCCCcEEEECCCCCCCccCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 99999832110 0 0 000001 111 345566666655567889999997
No 52
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A*
Probab=99.38 E-value=1.5e-12 Score=129.35 Aligned_cols=163 Identities=14% Similarity=0.162 Sum_probs=111.9
Q ss_pred eEEEec----C---CeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHH----hCCCCEEEe
Q 011237 224 HRFVAQ----G---EALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQK----CNPDAILLA 292 (490)
Q Consensus 224 ~~~li~----g---~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~----~~p~a~I~~ 292 (490)
++|++. + ..+|||||.+.. .++.+ ....++++||+||.|.||++ |+..|+. ....++||+
T Consensus 64 ~s~li~~~~~~g~~~~iLID~G~~~~--~~l~~--~~~~~id~IliTH~H~DHi~-----Gl~~l~~~~~~~~~~~~vy~ 134 (293)
T 3md7_A 64 ASLLVERYDAEGNNTVVVIDTGPDFR--MQMID--SGVHMLDAAVYTHPHADHIH-----GIDDLRTYVVDNGRLMDVYA 134 (293)
T ss_dssp CEEEEEEECTTCCEEEEEECCCTTHH--HHHHH--HTCCCCSEEECSCCCHHHHT-----TGGGGHHHHHHHTSCEEEEE
T ss_pred cEEEEEecCCCCceeEEEEECCccHH--HHHHh--cCCCcccEEEEcCCCchhhC-----CHHHHHHHhhcCCCceEEEE
Confidence 666665 3 489999997743 33433 24567889999999999999 8876654 235789999
Q ss_pred ChhhHHhhccC-----------CCC--CCceecCCCceEEECC----EEEEEEeCCCCCCCCeEEEECCCCEEEEccccC
Q 011237 293 HENTMRRIGKD-----------DWS--LGYTSVSGSEDICVGG----QRLTVVFSPGHTDGHVALLHASTNSLIVGDHCV 355 (490)
Q Consensus 293 ~~~~~~~l~~~-----------~~~--~~~~~~~~g~~l~lgg----~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~ 355 (490)
++.+.+.+... .++ ..+..+.+|+.+++++ .+++++++++++.++++|.+. +++|+||+..
T Consensus 135 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~g~~~~~~~v~~~~~~H~~~~~~g~~i~--~~~y~gDt~~ 212 (293)
T 3md7_A 135 NRLTRNRLYDTFGYCFETPVGSSYPPILSMHDIAPETPFSIEGAGGAIRFEPFSQVHGDIESLGFRIG--SVVYCTDVSA 212 (293)
T ss_dssp CHHHHHHHHHHCGGGTSCCTTCCCCCCEEEEECCTTCCEEECCTTCCEEEEEEEEEETTEEEEEEEET--TEEEECSCSB
T ss_pred CHHHHHHHHHhhhhhhccccccCCCCceEEEEcCCCCcEEECCCCCcEEEEEEEecCCCCCEEEEEEe--EEEEECCCCC
Confidence 98877665431 011 1345678899999999 999999999666789999885 9999999962
Q ss_pred -CCCc---------cccccC---CCCCHHHHHHHHHHHHcCCCCEEEcCCCCCCC
Q 011237 356 -GQGS---------AVLDIT---AGGNMTDYFQSTYKFLELSPHALIPMHGRVNL 397 (490)
Q Consensus 356 -~~~~---------~~~~~~---~~~~~~~~~~SL~~L~~l~~~~ilPgHG~~~~ 397 (490)
.... ...+.. ....-..+.++++.+++++++.+++.|-....
T Consensus 213 ~~~~~~~~~~~~Dlli~e~~~~~~~~~H~~~~~a~~~~~~~~~k~lvl~H~~~~~ 267 (293)
T 3md7_A 213 FPEQSLQYIKDADVLIIGALQYRPHPSHFSLGEALEWIEKLSPKRAILTHMHVPL 267 (293)
T ss_dssp CCGGGHHHHTTCSEEEEECCCSSCBTTBCCHHHHHHHHHHHCCSEEEEESBCTTC
T ss_pred CCHHHHHHhcCCCEEEEeCccCCCCCCCCCHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 2110 011110 01111234456666677788999999987643
No 53
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A
Probab=99.36 E-value=7.8e-13 Score=128.79 Aligned_cols=120 Identities=16% Similarity=0.101 Sum_probs=86.8
Q ss_pred ceEEEe--cCCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhC-CCCEEEeChhhH--
Q 011237 223 NHRFVA--QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCN-PDAILLAHENTM-- 297 (490)
Q Consensus 223 ~~~~li--~g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~-p~a~I~~~~~~~-- 297 (490)
.++|++ .+..+|||+|.... .+ .....++++||+||.|.||++ |+..++... ..++||+++.+.
T Consensus 39 ~s~~li~~~~~~iLiD~G~~~~-----~~-~~~~~~id~IliTH~H~DHi~-----gl~~l~~~~~~~~~v~~~~~~~~~ 107 (258)
T 3g1p_A 39 PCSGVVKFNDAITLIDAGLHDL-----AD-RWSPGSFQQFLLTHYHMDHVQ-----GLFPLRWGVGDPIPVYGPPDEQGC 107 (258)
T ss_dssp BSEEEEEETTEEEEECCCCTTH-----HH-HCCTTSSCEEECSCCCHHHHG-----GGTTTTTCSSSCEEEEECCCSSCS
T ss_pred CceEEEEECCcEEEEECCchHH-----Hh-hcCcccCCEEEEccCchhHhC-----CHHHHhccCCCCeEEEeChhhhhH
Confidence 345555 24589999995431 11 123456789999999999999 998876543 247899988765
Q ss_pred -HhhccCCCCCCc-eecCCCceEEECCEEEEEEeCCCCCCCCeEEEECC--CCEEEEccccC
Q 011237 298 -RRIGKDDWSLGY-TSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAS--TNSLIVGDHCV 355 (490)
Q Consensus 298 -~~l~~~~~~~~~-~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~--~~vLftGD~l~ 355 (490)
..+..... ..+ ..+.+|+.+++|+.++++++++ |++++++|.+.. .+++|+||+..
T Consensus 108 ~~~~~~~~~-~~~~~~~~~g~~~~~g~~~v~~~~~~-H~~~~~g~~i~~~~~~i~~~GDt~~ 167 (258)
T 3g1p_A 108 DDLFKHPGL-LDFSHTVEPFVVFDLQGLQVTPLPLN-HSKLTFGYLLETAHSRVAWLSDTAG 167 (258)
T ss_dssp TTTTTSCTT-EEEEEECCTTCCEEETTEEEEEEECC-SSSCCEEEEEECSSCEEEEECSCSS
T ss_pred HHHhcCCCc-cccccccCCCCeEEECCEEEEEEECC-CCCCceEEEEEeCCcEEEEECCCCC
Confidence 33322111 112 4688999999999999999999 999999998864 36999999853
No 54
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Probab=99.35 E-value=7.3e-13 Score=129.69 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=80.7
Q ss_pred CcceEEEecCCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHH---H-hC----CCCEEEe
Q 011237 221 CGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQ---K-CN----PDAILLA 292 (490)
Q Consensus 221 ~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~---~-~~----p~a~I~~ 292 (490)
+.++++++.++.+|||||.+.. +. +.....++++|++||.|.||++ |+..+. . .+ +.++||+
T Consensus 10 ~~~~~~~i~~~~iLiD~G~~~~--~~---l~~~~~~i~~IliTH~H~DH~~-----gl~~l~~~~~~~~~~~~~~~~v~~ 79 (280)
T 2e7y_A 10 LFSTWIYYSPERILFDAGEGVS--TT---LGSKVYAFKYVFLTHGHVDHIA-----GLWGVVNIRNNGMGDREKPLDVFY 79 (280)
T ss_dssp TTEEEEEEGGGTEEEEECTTHH--HH---HGGGGGGCCEEECSCCCHHHHT-----THHHHHHHHHHHSGGGCCCEEEEE
T ss_pred CceEEEEECCcEEEEECCcchH--HH---hccCccCCCEEEEeCCchhHHC-----CHHHHHHHHHHhccCCCCCCEEEE
Confidence 3456666666789999998653 22 2334556779999999999999 998884 2 22 3589999
Q ss_pred ChhhHHhhccC-----------CCCCCceecCCCceEEEC-----CEEEEEEeCCCCCCC--CeEEEEC
Q 011237 293 HENTMRRIGKD-----------DWSLGYTSVSGSEDICVG-----GQRLTVVFSPGHTDG--HVALLHA 343 (490)
Q Consensus 293 ~~~~~~~l~~~-----------~~~~~~~~~~~g~~l~lg-----g~~l~vi~tPGHT~g--~i~l~~~ 343 (490)
++.+. .+... .....+..+.+|+.+++| +.+++++++ +|+++ +++|.+.
T Consensus 80 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~v~~~~~-~H~~~~~~~g~~i~ 146 (280)
T 2e7y_A 80 PEGNR-AVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAGGFKRYVQPFRT-KHVSSEVSFGYHIF 146 (280)
T ss_dssp ETTCH-HHHHHHHHHHHHCGGGTTTEEEEEECTTCCEECCCSSCSCEEEEEEEC-CSCSSSCCEEEEEE
T ss_pred CccHH-HHHHHHHHHhhcccCCCCceEEEEcCCCCEEEeCCcccCCEEEEEEEc-cCCCCCceEEEEEE
Confidence 88765 43210 111245678899999999 889999988 99999 9998874
No 55
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=99.34 E-value=1.8e-11 Score=135.66 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=89.9
Q ss_pred CCcceEEEec--CCeEEEcCCCCCh--HHHHHHHHHHh-CCCceEEEecCCCccccCchhhccHHHHHHhC-----CCCE
Q 011237 220 DCGNHRFVAQ--GEALIVDPGCRSE--FHEELLKVVAS-LPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCN-----PDAI 289 (490)
Q Consensus 220 ~~~~~~~li~--g~~iLIDtG~~~~--~~~~L~~~~~~-~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~-----p~a~ 289 (490)
..+++||++. +..+|||||.... ....+...+.. ...+.+||+||.|.||+| |+..+.+.+ .+++
T Consensus 12 ev~~n~~LIe~~~~~ILID~G~~~~~~~~~~~l~~L~~~~~~IdaVlLTH~H~DHiG-----gLp~L~~~~~~g~~~~~p 86 (717)
T 2i7x_A 12 SGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLG-----AHSLLYYNFTSHFISRIQ 86 (717)
T ss_dssp SSSCCCEEEEETTEEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHT-----THHHHHHHSHHHHHHTCE
T ss_pred CCCCCEEEEEECCeEEEEeCCCCcccchhhhHHHHHHhcCCCCCEEEECCCChHHHC-----CHHHHHHhhhhcccCCce
Confidence 3456667663 4589999998752 11112122222 235679999999999999 999998654 3789
Q ss_pred EEeChhhHHhhcc--------C----CC-----C--------CCceecCCCceEEE----CCEEEEEEeCCCCCCCCeEE
Q 011237 290 LLAHENTMRRIGK--------D----DW-----S--------LGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVAL 340 (490)
Q Consensus 290 I~~~~~~~~~l~~--------~----~~-----~--------~~~~~~~~g~~l~l----gg~~l~vi~tPGHT~g~i~l 340 (490)
||+++.+...+.. . .+ . ..+..+..++.+.+ ++.+++++ .+||++|++++
T Consensus 87 IY~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~l~~ge~i~l~~~~ggi~V~~~-~aGHs~Gs~~~ 165 (717)
T 2i7x_A 87 VYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAY-NAGVCPGGSIW 165 (717)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEE-ECSSSTTCEEE
T ss_pred EEecchhHHHHHHHHHHHHHhhccccccccccccHHHHHhhhhceEEecCCCEEEEeecCCCEEEEEE-CCCCCCCcEEE
Confidence 9999876543210 0 01 0 02456788999999 88888775 68999999998
Q ss_pred EEC--CCCEEEEcccc
Q 011237 341 LHA--STNSLIVGDHC 354 (490)
Q Consensus 341 ~~~--~~~vLftGD~l 354 (490)
.+. ..+++|+||+-
T Consensus 166 ~I~~~~~~IvytGD~~ 181 (717)
T 2i7x_A 166 CISTYSEKLVYAKRWN 181 (717)
T ss_dssp EEECSSCEEEECSSCC
T ss_pred EEEeCCCEEEEECCCC
Confidence 874 56899999974
No 56
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=99.33 E-value=2.9e-12 Score=140.92 Aligned_cols=126 Identities=20% Similarity=0.183 Sum_probs=90.4
Q ss_pred ceEEEec--CCeEEEcCCCCChH----HHHHHH-----HHHhC--CCceEEEecCCCccccCchhhccHHHHHHhC-CCC
Q 011237 223 NHRFVAQ--GEALIVDPGCRSEF----HEELLK-----VVASL--PRKLIVFVTHHHRDHVDGEFIRGLSIIQKCN-PDA 288 (490)
Q Consensus 223 ~~~~li~--g~~iLIDtG~~~~~----~~~L~~-----~~~~~--~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~-p~a 288 (490)
++||++. +..+|||||..... ...+.. ..... .++++||+||.|.||+| |+..+.+.. .++
T Consensus 202 ~s~~LI~~~~~~ILID~G~~~~~~~~g~~~l~~l~~~~~g~~~~~~~Id~VllTH~H~DHiG-----glp~L~~~~~~~~ 276 (651)
T 3af5_A 202 RSALLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAIIITHAHLDHCG-----MLPYLFRYNLFDG 276 (651)
T ss_dssp CCEEEEEESSCEEEECCCCCGGGTTCHHHHSCCTTCHHHHHHHHTTCCCEEECSCSSHHHHT-----THHHHHHTTCCCS
T ss_pred CcEEEEEECCcEEEEeCCCChhccccchhhcccccchhhccCcccCCCCEEEECCCChHhhc-----CHHHHHhcCCCCc
Confidence 4566553 56899999987542 111111 11133 56789999999999999 999998743 368
Q ss_pred EEEeChhhHHhhcc-----------C----CCC--------CCceecCCCceEEE-CCEEEEEEeCCCCCCCCeEEEEC-
Q 011237 289 ILLAHENTMRRIGK-----------D----DWS--------LGYTSVSGSEDICV-GGQRLTVVFSPGHTDGHVALLHA- 343 (490)
Q Consensus 289 ~I~~~~~~~~~l~~-----------~----~~~--------~~~~~~~~g~~l~l-gg~~l~vi~tPGHT~g~i~l~~~- 343 (490)
+||++..+...+.. . .+. ..+..+..|+.+++ ++.++++ ..+||++|++++++.
T Consensus 277 pIy~t~~t~~ll~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~ggi~v~~-~~~gH~~Gs~~~~i~~ 355 (651)
T 3af5_A 277 PIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTL-HNAGHILGSAIVHLHI 355 (651)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTEEECCTTCCEEEETTEEEEE-EECSSSTTCEEEEEEE
T ss_pred eEEEcHHHHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHhhhcEEEeCCCCEEEecCCEEEEE-ecCCCCcCcEEEEEEE
Confidence 99999887654321 0 110 12456888999999 9988887 669999999999875
Q ss_pred -CC--CEEEEcccc
Q 011237 344 -ST--NSLIVGDHC 354 (490)
Q Consensus 344 -~~--~vLftGD~l 354 (490)
+. +++|+||+-
T Consensus 356 ~~~~~~ilftGD~~ 369 (651)
T 3af5_A 356 GNGLHNIAITGDFK 369 (651)
T ss_dssp TTTTTCEEECCSCC
T ss_pred CCCceEEEEeCCCC
Confidence 56 899999994
No 57
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}
Probab=99.33 E-value=4.8e-12 Score=121.81 Aligned_cols=154 Identities=21% Similarity=0.272 Sum_probs=101.0
Q ss_pred ceEEEec--CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHH-hCCCCEEEeChhhHHh
Q 011237 223 NHRFVAQ--GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQK-CNPDAILLAHENTMRR 299 (490)
Q Consensus 223 ~~~~li~--g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~-~~p~a~I~~~~~~~~~ 299 (490)
++||+++ +..+|||||..... ...+.++++|++||.|.||++ .. .+.. ..++++|+++..+...
T Consensus 37 ~s~~li~~~~~~iliDpg~~~~~-------~~~~~~id~VliTH~H~DH~~-----~~-~l~~~~~~~~~v~~~~~~~~~ 103 (235)
T 3kl7_A 37 HGSLMLTYDNHSIQVDPVSEYAD-------YTTFPKADIILITHEHGDHLD-----PK-AIQAVEKSDTEIIANENSQKK 103 (235)
T ss_dssp TTEEEEEETTEEEEESCCTTTCC-------TTSSCCCSEEEECCSSTTTCC-----HH-HHHHHCCTTCEEEECHHHHHH
T ss_pred ceEEEEEECCEEEEECCCCCccc-------hhhCCCCCEEEECCCccccCC-----HH-HHHHhhcCCCEEEEcHHHHHH
Confidence 3566663 45899999987541 234556789999999999998 32 3322 2468999999998887
Q ss_pred hccCCCCCCceecCCCc-eEEECCEEEEEEeCCCCCC--------C-CeEEEE--CCCCEEEEccccCCCCccc---cc-
Q 011237 300 IGKDDWSLGYTSVSGSE-DICVGGQRLTVVFSPGHTD--------G-HVALLH--ASTNSLIVGDHCVGQGSAV---LD- 363 (490)
Q Consensus 300 l~~~~~~~~~~~~~~g~-~l~lgg~~l~vi~tPGHT~--------g-~i~l~~--~~~~vLftGD~l~~~~~~~---~~- 363 (490)
+.+ ...+..|+ .+++|+.+|+++++++.++ | ..+|.+ ++.+++|+||+.+...... ++
T Consensus 104 l~~------~~~l~~g~~~~~~g~~~i~~~p~~H~~~~~~~~~~~~~~~g~~i~~~g~~i~~~GDt~~~~~~~~l~~~Dv 177 (235)
T 3kl7_A 104 LGK------GKVLKNGDTDTSISYMKIEAVPAYNTTPGRDKYHPRHRDNGYILTFDGLRVYIAGDTEDIPEMKDLKDIDI 177 (235)
T ss_dssp HTC------SEECCTTCEECCSTTCEEEEEECCCCSTTGGGTSCTTTSEEEEEEETTEEEEECCSCCSCGGGGGCCSCSE
T ss_pred hcC------cEEecCCCEEEEECCEEEEEEEeecCCCccccccCCCCceEEEEEeCCeEEEEECCCCchhhHHhhcCCCE
Confidence 742 46788999 9999999999997763322 2 245554 3557999999975432110 11
Q ss_pred --cCCCCCH-HHHHHHHHHHHcCCCCEEEcCCCCC
Q 011237 364 --ITAGGNM-TDYFQSTYKFLELSPHALIPMHGRV 395 (490)
Q Consensus 364 --~~~~~~~-~~~~~SL~~L~~l~~~~ilPgHG~~ 395 (490)
.+..+.. ....++++.++.++++.++|.|-..
T Consensus 178 ~il~~~~~~h~~~~ea~~~~~~l~~k~vip~H~~~ 212 (235)
T 3kl7_A 178 AFLPVNQPYTMTVSQAAKAARMFSPKILYPYHYGD 212 (235)
T ss_dssp EEEECCTTTSCCHHHHHHHHHHHCCSEEEEESCTT
T ss_pred EEECCCCCcccCHHHHHHHHHHcCCCEEEEEcCCC
Confidence 0111110 1233444455566899999999876
No 58
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10
Probab=99.28 E-value=5.4e-12 Score=131.88 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=72.8
Q ss_pred CCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccC---C------------CCCCceecCCCceEE
Q 011237 255 PRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKD---D------------WSLGYTSVSGSEDIC 319 (490)
Q Consensus 255 ~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~---~------------~~~~~~~~~~g~~l~ 319 (490)
.++++||+||.|.||+| |+..+.+ +++||+++.+...+... . ....+..+..|+.+.
T Consensus 83 ~~i~~v~lTH~H~DHig-----gl~~l~~---~~~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 154 (429)
T 2az4_A 83 YQHTAVFLSHAHLDHSR-----MINYLDP---AVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIK 154 (429)
T ss_dssp CSEEEEECSCSCHHHHT-----TGGGBCT---TSCEEEEHHHHHHHHHHTTTSCSSCCCTTSCTTCCCCCEEECTTCEEE
T ss_pred ccCCEEEECCchHHHhC-----cHhHhcC---CCCEEECHHHHHHHHHHHHhCccccccccccccccceEEEeCCCCeEE
Confidence 35569999999999999 9988753 68999999877654321 0 123456788999999
Q ss_pred ECCEEEEEEeCCCC-CCCCeEEEE--CCCCEEEEccccC
Q 011237 320 VGGQRLTVVFSPGH-TDGHVALLH--ASTNSLIVGDHCV 355 (490)
Q Consensus 320 lgg~~l~vi~tPGH-T~g~i~l~~--~~~~vLftGD~l~ 355 (490)
+|+.++++++++ | ++|++++.+ ++.+++|+||+.+
T Consensus 155 ~g~~~v~~~~~~-H~~~gs~~~~i~~~~~~i~~tGD~~~ 192 (429)
T 2az4_A 155 VGEISVEIVPVD-HDAYGASALLIRTPDHFITYTGDLRL 192 (429)
T ss_dssp ETTEEEEEEECC-CSSTTCEEEEEEETTEEEEECCSCCS
T ss_pred ECCEEEEEEECC-CCChhhEEEEEEeCCcEEEECCCccc
Confidence 999999999885 7 899999876 4567999999975
No 59
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*
Probab=99.25 E-value=1.4e-11 Score=126.07 Aligned_cols=139 Identities=16% Similarity=0.102 Sum_probs=89.5
Q ss_pred CCceEEEecCCCccccCchhhccHHHHHHhCC-CCEEEeChhhHHhhccCCCC-CCceecCCCceEEECCEEEEEEeCC-
Q 011237 255 PRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNP-DAILLAHENTMRRIGKDDWS-LGYTSVSGSEDICVGGQRLTVVFSP- 331 (490)
Q Consensus 255 ~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p-~a~I~~~~~~~~~l~~~~~~-~~~~~~~~g~~l~lgg~~l~vi~tP- 331 (490)
.++++|++||.|.||+|+. ++..+.+.++ +++||++......+.+...+ .....+..|+.+.+++.+++++.+.
T Consensus 108 ~~id~VliTH~H~DHig~~---~l~~l~~~~~~~~~v~~p~~~~~~l~~~g~~~~~~~~l~~g~~~~~g~~~v~~~~~~H 184 (360)
T 2wyl_A 108 RQIDAVLATHDHNDHIDVN---VAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHALDAFD 184 (360)
T ss_dssp CCCSEEECSBSCTTTCCHH---HHHHHHHHSCTTCCEEECHHHHHHHHHHTCCGGGEEECCTTCEEEETTEEEEEEECCC
T ss_pred CCCCEEEECCCchhcCCHH---HHHHHHhcCCCCCEEEEcHHHHHHHHHcCCChheEEEcCCCCEEEECCEEEEEEeccC
Confidence 4567999999999999922 2445655554 79999998887776542221 2456788999999999999988663
Q ss_pred ----------CCCCC---------CeEEEE--CCCCEEEEccccCCCCccc------cc---cCCCC------CHHHHHH
Q 011237 332 ----------GHTDG---------HVALLH--ASTNSLIVGDHCVGQGSAV------LD---ITAGG------NMTDYFQ 375 (490)
Q Consensus 332 ----------GHT~g---------~i~l~~--~~~~vLftGD~l~~~~~~~------~~---~~~~~------~~~~~~~ 375 (490)
||++| .+++.+ ++.+++|+||+.+...... ++ .+..+ .-....+
T Consensus 185 ~~~~~~~~~~~h~~g~~~~~~~~~~~g~~i~~~g~~i~~sGDt~~~~~~~~i~~~~~~Dv~il~~g~~~~~~~~h~~~~e 264 (360)
T 2wyl_A 185 RTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSAD 264 (360)
T ss_dssp C------------------CCTTTBEEEEEEETTEEEEECTTCCCCTTHHHHHHHSCCCEEEEEBCCCCTTCCCSBCHHH
T ss_pred cccccccccccccccccccccCcccEEEEEEECCcEEEEeCCCCcCHHHHHHhhCCCCCEEEecCCCCcccccCCCCHHH
Confidence 56655 466665 4567999999975432110 00 00000 0123345
Q ss_pred HHHHHHcCCCCEEEcCCCCCC
Q 011237 376 STYKFLELSPHALIPMHGRVN 396 (490)
Q Consensus 376 SL~~L~~l~~~~ilPgHG~~~ 396 (490)
+++.++.++++.++|.|...+
T Consensus 265 a~~~~~~l~~k~vi~~H~~~~ 285 (360)
T 2wyl_A 265 MLRMGEALNAKVVIPFHHDIW 285 (360)
T ss_dssp HHHHHHHHTCSEEEEESTTTB
T ss_pred HHHHHHHhCCCEEEEEeeccc
Confidence 566666778999999998765
No 60
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=99.24 E-value=3e-12 Score=135.15 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=87.8
Q ss_pred cceEEEec--CCeEEEcCCCCChH--HHHHHHH-HHhCCCceEEEecCCCccccCchhhccHHHHHHhC-CCCEEEeChh
Q 011237 222 GNHRFVAQ--GEALIVDPGCRSEF--HEELLKV-VASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCN-PDAILLAHEN 295 (490)
Q Consensus 222 ~~~~~li~--g~~iLIDtG~~~~~--~~~L~~~-~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~-p~a~I~~~~~ 295 (490)
+++||+++ +..+|||||..... ...+..+ .....++++||+||.|.||+| |+..+.... .+.+||++..
T Consensus 24 g~s~~li~~~~~~iLID~G~~~~~~~~~~~~~l~~~~~~~Id~VllTH~H~DH~g-----gl~~l~~~~~~~~~iy~t~~ 98 (459)
T 2i7t_A 24 GRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCG-----ALPWFLQKTSFKGRTFMTHA 98 (459)
T ss_dssp SSCEEEEEETTEEEEECCCCCTTSCGGGGSCCGGGSCGGGCCEEECCCSSHHHHT-----THHHHHHHSSCCSEEEEEHH
T ss_pred CCCEEEEEECCeEEEEeCCCCcCcccccccCcccccCcccCcEEEECCCChhhhh-----hhHHHHHhcCCCCCEEechH
Confidence 45666663 45899999986321 1111000 112345679999999999999 999987653 2579999887
Q ss_pred hHHhhcc---------------CCCC--------CCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEEC--CCCEEEE
Q 011237 296 TMRRIGK---------------DDWS--------LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--STNSLIV 350 (490)
Q Consensus 296 ~~~~l~~---------------~~~~--------~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~--~~~vLft 350 (490)
+...+.. ..+. ..+..+..++.++++|.+++++ .+||++|++++++. +.+++|+
T Consensus 99 t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~-~~GH~~Gs~~~~i~~~~~~il~s 177 (459)
T 2i7t_A 99 TKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCY-HAGHVLGAAMFMIEIAGVKLLYT 177 (459)
T ss_dssp HHHHHHHHHHHHCC---------CCCHHHHHHHGGGEEEECTTCCEEETTEEEEEE-ECCSSTTCEEEEEEETTEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcccccccccCHHHHHHHHhccEEeCCCCEEEECCEEEEEE-eCCCccCcEEEEEEECCcEEEEe
Confidence 6543210 0000 1345678889999999888775 78999999999875 3479999
Q ss_pred ccccC
Q 011237 351 GDHCV 355 (490)
Q Consensus 351 GD~l~ 355 (490)
||+..
T Consensus 178 GD~~~ 182 (459)
T 2i7t_A 178 GDFSR 182 (459)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 99864
No 61
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7
Probab=99.23 E-value=4.1e-11 Score=119.04 Aligned_cols=106 Identities=16% Similarity=0.167 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHh------CCCCEEEeChhhHHhhcc-
Q 011237 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKC------NPDAILLAHENTMRRIGK- 302 (490)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~------~p~a~I~~~~~~~~~l~~- 302 (490)
++.+|||||.+.. ..+.+......++++|++||.|.||++ |+..+... .++++||+++.+...+..
T Consensus 33 ~~~iliD~G~~~~--~~l~~~~~~~~~i~~i~iTH~H~DH~~-----gl~~l~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 105 (306)
T 2cbn_A 33 SGLWLFDCGEGTQ--HQLLHTAFNPGKLDKIFISHLHGDHLF-----GLPGLLCSRSMSGIIQPLTIYGPQGIREFVETA 105 (306)
T ss_dssp CCEEEECCCTTHH--HHHHTSCCCTTTEEEEECSCCCHHHHT-----THHHHHHHHHHTTCCSCEEEEESTTHHHHHHHH
T ss_pred CcEEEEECCHHHH--HHHHHhCCCHHHcCEEEEecCCchhhC-----ChHHHHHHHHhcCCCCCeEEEcCccHHHHHHHH
Confidence 3589999998632 333332223456679999999999999 99887652 246899999887665432
Q ss_pred ---C----CCCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEEC
Q 011237 303 ---D----DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA 343 (490)
Q Consensus 303 ---~----~~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~ 343 (490)
. .....+..+.+|+.+++++.+++.+.++ |+.+++++.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~-H~~~~~gy~i~ 152 (306)
T 2cbn_A 106 LRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLE-HPLECYGYRIE 152 (306)
T ss_dssp HHHTTCCCSSCEEEEECCSEEEEECSSEEEEEEECB-SSSCCEEEEEE
T ss_pred HHhhccCCCceEEEEEcCCCcEeecCCEEEEEEEcc-CCCCccEEEEE
Confidence 1 1122345788899999999999999888 88888887663
No 62
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*
Probab=99.20 E-value=3.4e-11 Score=120.61 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=76.1
Q ss_pred ceEEEec-----CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHh------CCCCEEE
Q 011237 223 NHRFVAQ-----GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKC------NPDAILL 291 (490)
Q Consensus 223 ~~~~li~-----g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~------~p~a~I~ 291 (490)
+++|++. +..+|||||.+.. ..+.+......++++||+||.|.||++ |+..+... .++++||
T Consensus 19 ~~~~li~~~~~~~~~iLiD~G~~~~--~~l~~~~~~~~~i~~I~iTH~H~DH~~-----gl~~l~~~~~~~~~~~~~~v~ 91 (320)
T 1y44_A 19 VTSVALKLLEERRSVWLFDCGEATQ--HQMLHTTIKPRKIEKIFITHMHGDHVY-----GLPGLLGSRSFQGGEDELTVY 91 (320)
T ss_dssp BCEEEEEETTTTSEEEEECCCTTHH--HHHTTSSCCGGGEEEEECSBCCGGGTT-----THHHHHHHHHHTTCCSCEEEE
T ss_pred CCEEEEEEecCCCcEEEEECCHHHH--HHHHHcCCCHHHcCEEEEeCCChhhhC-----CHHHHHHHHHhcCCCCCEEEE
Confidence 4555553 3489999998642 222221112335679999999999999 99887652 1468999
Q ss_pred eChhhHHhhccC--------CCCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEEC
Q 011237 292 AHENTMRRIGKD--------DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA 343 (490)
Q Consensus 292 ~~~~~~~~l~~~--------~~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~ 343 (490)
+++.+...+... .....+..+.+|+.+++++.+++.+++ +|+.++++|.+.
T Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~p~-~H~~~~~gy~i~ 150 (320)
T 1y44_A 92 GPKGIKAFIETSLAVTKTHLTYPLAIQEIEEGIVFEDDQFIVTAVSV-IHGVEAFGYRVQ 150 (320)
T ss_dssp ESTTHHHHHHHHHHHTTCCCSSCEEEEECCSEEEEECSSEEEEEEEC-BSSSSBEEEEEE
T ss_pred eCHHHHHHHHHHHHhhccCCCCceEEEEcCCCceEecCCEEEEEEEc-cCCCCcceEEEe
Confidence 998876655321 112234568889999999866655544 699999998764
No 63
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Probab=99.19 E-value=3e-11 Score=124.50 Aligned_cols=140 Identities=15% Similarity=0.132 Sum_probs=92.8
Q ss_pred CCCceEEEecCCCccccCchhhccHHHHHHhCC-CCEEEeChhhHHhhccCCCC-CCceecCCCceEEECCEEEEEEeCC
Q 011237 254 LPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNP-DAILLAHENTMRRIGKDDWS-LGYTSVSGSEDICVGGQRLTVVFSP 331 (490)
Q Consensus 254 ~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p-~a~I~~~~~~~~~l~~~~~~-~~~~~~~~g~~l~lgg~~l~vi~tP 331 (490)
+.++++|++||.|.||+|+. ++..+.+.++ +++||++......+.+...+ .....+..|+.+.+++.+++++.+.
T Consensus 131 ~~~iD~IliTH~H~DHig~~---~l~~l~~~~~~~~~v~~~~~~~~~l~~~g~~~~~~~~l~~g~~~~~g~~~v~~~~~~ 207 (379)
T 3bv6_A 131 IKEIDAVLASHDHADHIDVN---VAAAVLQNCGEHVKFIGPQACVDLWLGWGVPQERCIVAKVGDVLEIGDVKIRVLDSF 207 (379)
T ss_dssp CCCCSEEECSBCSGGGCCHH---HHHHHHHHSCTTCEEEECHHHHHHHHHHTCCGGGEEECCTTCEEEETTEEEEEEECC
T ss_pred CCCCCEEEECCCCcccCChH---HHHHHHhcCCCCcEEEecHHHHHHHHHcCCChhhEEEeCCCCEEEECCEEEEEEecc
Confidence 34567999999999999832 3455656554 89999998887776542221 2456788999999999999998762
Q ss_pred ----------CCC--CC---------CeEEEE--CCCCEEEEccccCCCCccc------cc---cCCCC------CHHHH
Q 011237 332 ----------GHT--DG---------HVALLH--ASTNSLIVGDHCVGQGSAV------LD---ITAGG------NMTDY 373 (490)
Q Consensus 332 ----------GHT--~g---------~i~l~~--~~~~vLftGD~l~~~~~~~------~~---~~~~~------~~~~~ 373 (490)
||+ +| ++++.+ ++.+++|+||+.+...... ++ .+..+ .-...
T Consensus 208 H~~~~~~~p~~h~~~~G~~~~~~~~~~~g~~i~~~g~~i~~sGDt~~~~~~~~i~~~~~~Dv~il~~g~~~~~~~~h~~~ 287 (379)
T 3bv6_A 208 DRTALVTLPKGVSSYDKAILDGMDERAVNYLIETSGGSVYHSGDSHYSNYYAKHGNDYQIDVALLSYGENPRGVTDKMTS 287 (379)
T ss_dssp CHHHHTCCCTTSCSSCGGGGGCHHHHBEEEEEEETTEEEEECTTCCCCTTHHHHHHHSCCSEEEEEBCCCCTTCCCSBCH
T ss_pred cccccccccccccccccccccccCCceEEEEEEeCCeEEEEeCCCCccHHHHHHhhcCCCCEEEecCCCCcccccccCCH
Confidence 343 22 567766 4567999999975432100 00 00110 01234
Q ss_pred HHHHHHHHcCCCCEEEcCCCCCC
Q 011237 374 FQSTYKFLELSPHALIPMHGRVN 396 (490)
Q Consensus 374 ~~SL~~L~~l~~~~ilPgHG~~~ 396 (490)
.++++.++.++++.++|.|..++
T Consensus 288 ~ea~~~~~~l~~k~vi~~H~~~~ 310 (379)
T 3bv6_A 288 SDVLRAAESLDCQVVVPFHHDIW 310 (379)
T ss_dssp HHHHHHHHHHTCSEEEEESTTSB
T ss_pred HHHHHHHHHcCCCEEEEEeeccc
Confidence 45566666778999999998765
No 64
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis}
Probab=99.13 E-value=2e-10 Score=113.59 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=103.4
Q ss_pred CCCcceEEEec--CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhh
Q 011237 219 DDCGNHRFVAQ--GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENT 296 (490)
Q Consensus 219 ~~~~~~~~li~--g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~ 296 (490)
.+..+++|+++ ++.+|||||.+....+.+.+...+..++++|++||.|.||+| |+..|.+.+++++||+++.+
T Consensus 29 ~~~~g~s~li~~~~~~iLiD~G~~~~~~~~l~~~g~~~~~i~~v~lTH~H~DH~g-----gl~~~~~~~~~~~v~~~~~~ 103 (284)
T 2p4z_A 29 VAEHGLSLLLKKGNKEIVVDTGQSENFIKNCGLMGIDVGRIKKVVLTHGHYDHIG-----GLKGLLERNPEVKIYTHKEI 103 (284)
T ss_dssp CBCSSCEEEEEETTEEEEECCCSSTHHHHHHHHTTCCGGGCCEEECCCSCHHHHT-----THHHHHHHCTTCEEEEEGGG
T ss_pred ccCCEEEEEEEECCeEEEEeCCCCHHHHHHHHHcCCChhhCCEEEECCCCchhhc-----cHHHHHHHcCCCceecCHHH
Confidence 45566777774 348999999976544445444333446779999999999999 99999888889999999887
Q ss_pred HH-hhccCC-----C-C----------CCceecCCCceEEECCEEEEEEeCCCCCC----------------------CC
Q 011237 297 MR-RIGKDD-----W-S----------LGYTSVSGSEDICVGGQRLTVVFSPGHTD----------------------GH 337 (490)
Q Consensus 297 ~~-~l~~~~-----~-~----------~~~~~~~~g~~l~lgg~~l~vi~tPGHT~----------------------g~ 337 (490)
.+ .+.... + . ..+..+++ ..++++.-+.+-++|+|.+ +.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~i~~gi~~i~~~~~~h~~~~~~g~~~~~~~~~y~~D~~~de 181 (284)
T 2p4z_A 104 LNKKYAMRKGGQFEEIGFDLSFYEKYKNNFVLIDK--DAEIEEGFYVITNTDITYDNEFTTKNFFVEKEGKRIPDKFLDE 181 (284)
T ss_dssp GSCEEEECSSSCEEECSCCHHHHHHHGGGEEEESS--CEEEETTEEEECSCCCCSCCHHHHTTEEEEETTEEEECCCTTC
T ss_pred HHHHhccCccccccccccccchhhhcCceEEEeCC--CeEEeCCEEEEeeeCCccccccCCCceEEEcCCCEecCCCCCc
Confidence 64 222110 0 0 01112222 2344321122225666532 23
Q ss_pred eEEEECCCC--EEEEcccc------C-------CCCc--ccccc--CCCCCHHHHHHHHHHHHcCCCCEEEcCCCCC
Q 011237 338 VALLHASTN--SLIVGDHC------V-------GQGS--AVLDI--TAGGNMTDYFQSTYKFLELSPHALIPMHGRV 395 (490)
Q Consensus 338 i~l~~~~~~--vLftGD~l------~-------~~~~--~~~~~--~~~~~~~~~~~SL~~L~~l~~~~ilPgHG~~ 395 (490)
++.++...+ ++++|+.- + +... ..+.. ....+...+.++++.+++++++.++|+|...
T Consensus 182 ~~~~~~~~dglvli~gcsH~Gi~n~l~~~~~~~~~~~i~~~igg~Hl~~~~~~~~~~a~~~~~~~~~~~l~l~H~~~ 258 (284)
T 2p4z_A 182 VFVVVKEEDGINVVTGCSHAGILNILETARNRFGVSYIKSLIGGFHLRGMEEEKVKDIARKIEEYGVKKVLTGHCTG 258 (284)
T ss_dssp CEEEEEETTEEEEEESSCTTCHHHHHHHHHHHHTCSCBSEEEECCCCTTCCHHHHHHHHHHHHHTTBCCEEECGGGC
T ss_pred eEEEEEcCCcEEEEECCCCcCHHHHHHHHHHHcCCCceEEEEEcccCCCCCHHHHHHHHHHHHcCCCCEEEeeCcCc
Confidence 455555556 77888651 1 1000 00000 1233566888999999999999999999876
No 65
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=99.08 E-value=8.1e-10 Score=107.83 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=84.3
Q ss_pred CceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeC-hhhHHhhccCCCCCCceecCCCceEEECCEEEEEEeCCCCC
Q 011237 256 RKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAH-ENTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHT 334 (490)
Q Consensus 256 ~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~-~~~~~~l~~~~~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT 334 (490)
.+++|++||.|.||++ +...+... .+++||++ ......+.+.... ....+ ++.+++++.+|+.+.+. |+
T Consensus 64 ~id~iliTH~H~DH~~-----~~~~~~~~-~~~~v~~~~~~~~~~l~~~g~~-~~~~~--~~~~~~~~~~i~~~pa~-H~ 133 (264)
T 3rpc_A 64 NVTAVVVTHTHLDHWD-----DTAINSIP-KSLPIFVQNTADKELITSQGFI-DVRII--FESLEFNGITLRKTGGS-HG 133 (264)
T ss_dssp TCCEEECSCCCGGGSC-----HHHHHHSC-TTSCEEESSHHHHHHHHHTTCS-CEEEC--SSEEEETTEEEEEECCC-SS
T ss_pred cCCEEEECCCchhhCC-----CHHHHhhc-cCCeEEEeCHHHHHHHHhcCCC-eeEEe--cccEEECCEEEEEeccc-cC
Confidence 5679999999999999 88777654 58999998 7777776543321 22333 57899999776666332 66
Q ss_pred CC--------------CeEEEEC---CCCEEEEccccCCCCc--------c---ccccCC-------CCCHHHHHHHHHH
Q 011237 335 DG--------------HVALLHA---STNSLIVGDHCVGQGS--------A---VLDITA-------GGNMTDYFQSTYK 379 (490)
Q Consensus 335 ~g--------------~i~l~~~---~~~vLftGD~l~~~~~--------~---~~~~~~-------~~~~~~~~~SL~~ 379 (490)
++ .++|.+. +.+++|+||+.+.... + .+.... ......-.++++.
T Consensus 134 ~~~~~~~p~~~~~~~~~~g~~i~~~~~~~i~~~GDt~~~~~~~~~~~~~~~Dv~il~~g~~~~~~~~~~~hm~~~ea~~~ 213 (264)
T 3rpc_A 134 TVEMYANPVLAPLAGDAMGVIFEAADEPTVYLVGDTVWTSDVEKALLRFDPNVIIMNTGYAQILGFEDSIIMGTKDIGRM 213 (264)
T ss_dssp CHHHHTSTTHHHHHCCCCEEEEECTTSCCEEECCSCCSCHHHHHHHHHHCCSEEEEECSCBCBTTCSSCSSCCHHHHHHH
T ss_pred CccccccccccccccccEEEEEEeCCccEEEEECCcCchHHHHHHHHHhCCCEEEEecCccccccccCCcccCHHHHHHH
Confidence 64 2566654 4579999999754221 0 011100 0101122345555
Q ss_pred HHcCCCCEEEcCCCCCC
Q 011237 380 FLELSPHALIPMHGRVN 396 (490)
Q Consensus 380 L~~l~~~~ilPgHG~~~ 396 (490)
++.++++.++|.|-..+
T Consensus 214 ~~~l~~~~vi~~H~~~~ 230 (264)
T 3rpc_A 214 VVRKPEAKIIAVHMDTV 230 (264)
T ss_dssp HHHCTTSEEEEESCSSS
T ss_pred HHhCCcCeEEEEccccc
Confidence 56778899999998864
No 66
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Probab=99.07 E-value=6.8e-10 Score=119.61 Aligned_cols=127 Identities=14% Similarity=0.248 Sum_probs=84.4
Q ss_pred ceEEEec--CCeEEEcCCCCCh----------------------HHHHHHHHHHhC--CCceEEEecCCCccccCchhhc
Q 011237 223 NHRFVAQ--GEALIVDPGCRSE----------------------FHEELLKVVASL--PRKLIVFVTHHHRDHVDGEFIR 276 (490)
Q Consensus 223 ~~~~li~--g~~iLIDtG~~~~----------------------~~~~L~~~~~~~--~~~~~IviTH~H~DH~G~a~~~ 276 (490)
++|++|. ++.+|||||.... ..+.+...+... .++++||+||.|.||+|
T Consensus 18 g~~~lI~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~id~vilTH~H~DHig----- 92 (547)
T 2bib_A 18 SDAIILESNGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLDFILVTHTHSDHIG----- 92 (547)
T ss_dssp CCEEEEEETTEEEEEECCCCSCCCCSSSTTSCCCTTCCCCGGGCCHHHHHHHHHHTTCCCBSCEECCCSCHHHHT-----
T ss_pred ceEEEEEeCCeEEEEeCCCCCcccccccccccccccccccccchhHHHHHHHHHhcCcccccEEEEcCCCccccC-----
Confidence 4455552 4589999997621 123444444443 35679999999999999
Q ss_pred cHHHHHHhCCCCEEEeChhhHHhhccCC------------------CCCCce--ecCCCceEEECCEEEEEEeC-CC-C-
Q 011237 277 GLSIIQKCNPDAILLAHENTMRRIGKDD------------------WSLGYT--SVSGSEDICVGGQRLTVVFS-PG-H- 333 (490)
Q Consensus 277 G~~~l~~~~p~a~I~~~~~~~~~l~~~~------------------~~~~~~--~~~~g~~l~lgg~~l~vi~t-PG-H- 333 (490)
|+..+.+.++..+|++++.+...+.... ...+.. .+..++.+.+|+.+|++++. ++ |
T Consensus 93 gl~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~g~~~i~~l~~~~~~h~ 172 (547)
T 2bib_A 93 NVDELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTATETGVSVIQNITQGDAHFQFGDMDIQLYNYENETDS 172 (547)
T ss_dssp THHHHHHHSCBSEEECCCCCGGGBSCGGGCTTHHHHHHHHHHHHHHTTCEEECSCCTTTTEEEETTEEEEEESCSCCBCT
T ss_pred CHHHHHHhCCccEEEECcccccccCChHHHHhHHHHHHHHHHHHHHhCCeEEEeecCCCceEecCCeeEEEecCccccCc
Confidence 9999998877668998865443321100 011111 34678899999999999963 22 3
Q ss_pred ----------CCCCeEEEEC--CCCEEEEcccc
Q 011237 334 ----------TDGHVALLHA--STNSLIVGDHC 354 (490)
Q Consensus 334 ----------T~g~i~l~~~--~~~vLftGD~l 354 (490)
..+++++.+. +.++||+||+-
T Consensus 173 ~~~~~~~~~~n~~S~vl~i~~~~~~iLftGD~~ 205 (547)
T 2bib_A 173 SGELKKIWDDNSNSLISVVKVNGKKIYLGGDLD 205 (547)
T ss_dssp TSCBCCBSSGGGGCCEEEEEETTEEEEECTTCC
T ss_pred cccccccCCCCCCcEEEEEEECCEEEEecCCcc
Confidence 2456777664 56799999984
No 67
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}
Probab=99.00 E-value=7.2e-10 Score=113.59 Aligned_cols=107 Identities=21% Similarity=0.200 Sum_probs=82.7
Q ss_pred cCCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccCC--CC
Q 011237 229 QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKDD--WS 306 (490)
Q Consensus 229 ~g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~~--~~ 306 (490)
.|..++||+... ....++++||+||.|.||+| |+.. . .+++||+++.+...+.... ..
T Consensus 35 pG~~ilVD~f~~-----------~~~~~IdaI~lTH~H~DHig-----gl~~---~-~~~pIy~s~~t~~ll~~~l~~~~ 94 (367)
T 4b87_A 35 PGTGFTVDAFQY-----------GVVEGCTAYFLTHFHSDHYA-----GLSK---H-FTFPVYCSEITGNLLKNKLHVQE 94 (367)
T ss_dssp TTSSEEESCCSS-----------SSCTTCCEEECCCCCHHHHT-----TCST---T-CCSCEEECHHHHHHHHHHSCCCG
T ss_pred CCCeEEEeCCCc-----------CCccCCcEEEECcChHHHhC-----Cccc---c-cCCcEEECHHHHHHHHHHhcccc
Confidence 355799998633 24567889999999999999 8872 2 4789999999887664321 11
Q ss_pred CCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEEC--CCC-EEEEccccCC
Q 011237 307 LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--STN-SLIVGDHCVG 356 (490)
Q Consensus 307 ~~~~~~~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~--~~~-vLftGD~l~~ 356 (490)
..+..+..|+.+.+|+.+++++. +||++|++++++. +++ ++|+||+.+.
T Consensus 95 ~~~~~l~~g~~~~ig~~~v~~~~-agH~~gs~~~~i~~~~g~~il~tGD~~~~ 146 (367)
T 4b87_A 95 QYIHPLPLDTECIVNGVKVVLLD-ANHCPGAVMILFYLPNGTVILHTGDFRAD 146 (367)
T ss_dssp GGEEECCBTSCEEETTEEEEEEE-CSSSTTCEEEEEECTTSCEEEECCSCCCC
T ss_pred ceEEEeCCCCEEEECCEEEEEEe-CCCcCCcEEEEEEcCCCcEEEEecCcccC
Confidence 23567888999999999999877 8999999999884 344 9999999754
No 68
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A
Probab=98.97 E-value=1e-09 Score=110.48 Aligned_cols=124 Identities=8% Similarity=0.055 Sum_probs=88.2
Q ss_pred ceEEEec--CC-eEEEcCCCCChHHHHHHHHHH-------hCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEe
Q 011237 223 NHRFVAQ--GE-ALIVDPGCRSEFHEELLKVVA-------SLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLA 292 (490)
Q Consensus 223 ~~~~li~--g~-~iLIDtG~~~~~~~~L~~~~~-------~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~ 292 (490)
.+|++++ +. .+|||+|.+.. .++.+... +..++++||+||.|.||++ |+..+++. .+++||+
T Consensus 41 ~ss~li~~~~~~~iLiD~G~~~~--~~l~~~~~l~~~~~~~~~~i~~i~lTH~H~DH~~-----gl~~l~~~-~~~~vy~ 112 (321)
T 3jxp_A 41 QSSIALSDDGVHWILCNASPDIR--AQLQAFAPMQPARALRDTGINAIVLLDSQIDHTT-----GLLSLREG-CPHQVWC 112 (321)
T ss_dssp BCEEEEESSSSSEEEECCCTTHH--HHHHTCGGGCCCSSSSCCSEEEEECSCCCHHHHG-----GGGGGGGG-CCEEEEE
T ss_pred ceEEEEEeCCceEEEEeCCchHH--HHHHhcccccccccCCcccCCEEEECCCChhhhh-----hHHHHHhc-CCCeEEE
Confidence 3455552 33 49999998643 33333221 3456779999999999999 99998764 4789999
Q ss_pred ChhhHHhhccCC---------C-CCCceecCCCceEEE---CCEEEEEEeCC-------CCCC-----CCeEEEEC----
Q 011237 293 HENTMRRIGKDD---------W-SLGYTSVSGSEDICV---GGQRLTVVFSP-------GHTD-----GHVALLHA---- 343 (490)
Q Consensus 293 ~~~~~~~l~~~~---------~-~~~~~~~~~g~~l~l---gg~~l~vi~tP-------GHT~-----g~i~l~~~---- 343 (490)
++.+.+.+.... . ...+..+..|+.+.+ ++.+|+.+.++ -|.. ..++|.+.
T Consensus 113 ~~~~~~~l~~~~~~f~~~~~~~~~i~~~~i~~g~~~~i~~~~~~~V~~~~v~H~~~~~~~H~~~~~~~~~~Gy~i~~~~~ 192 (321)
T 3jxp_A 113 TDMVHQDLTTGFPLFNMLSHWNGGLQWNRIELEGSFVIDACPNLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTRT 192 (321)
T ss_dssp CHHHHHHTTTTSCHHHHHTTTTTCEEEEECCSSSCEECTTSTTEEEEEEEECCCCCTTCTTTTSCCTTSEEEEEEEETTT
T ss_pred CHHHHHHHHhhCccccccccccCceeEEEcCCCCeEEeccCCCeEEEEEEecCCccccccccccccCCCcEEEEEEecCC
Confidence 999888776321 0 123456788999999 99999999887 3664 56677664
Q ss_pred CCCEEEEcccc
Q 011237 344 STNSLIVGDHC 354 (490)
Q Consensus 344 ~~~vLftGD~l 354 (490)
+.+++|+||+-
T Consensus 193 g~~i~y~~Dt~ 203 (321)
T 3jxp_A 193 GGKLFYAPGLG 203 (321)
T ss_dssp CCEEEEESSCC
T ss_pred CcEEEEECCCC
Confidence 34699999984
No 69
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}
Probab=98.96 E-value=1.6e-09 Score=111.01 Aligned_cols=73 Identities=25% Similarity=0.260 Sum_probs=51.0
Q ss_pred cceEEEec--CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhC----------CCCE
Q 011237 222 GNHRFVAQ--GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCN----------PDAI 289 (490)
Q Consensus 222 ~~~~~li~--g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~----------p~a~ 289 (490)
+.++|++. +..+|||||.+.. ..+.+...+..++.+||+||.|.||++ |+..+.... +.++
T Consensus 18 ~~ss~ll~~~~~~iLiD~G~g~~--~~l~~~~~~~~~id~I~iTH~H~DHi~-----gl~~l~~~~~~~~~~~~~~~~l~ 90 (368)
T 3zwf_A 18 GASAVVLRCEGECWLFDCGEGTQ--TQLMKSQLKAGRITKIFITHLHGDHFF-----GLPGLLCTISLQSGSMVSKQPIE 90 (368)
T ss_dssp CSSEEEEEETTEEEEECCCTTHH--HHHHHSSSCGGGEEEEECCCSSGGGTT-----THHHHHHHHHHHC------CCEE
T ss_pred CccEEEEEECCeEEEEeCChhHH--HHHHHcCCChHHCCEEEECCCChHHhC-----cHHHHHHHhhhccccccCCCCeE
Confidence 34555552 5589999997653 334333333346779999999999999 998776431 3689
Q ss_pred EEeChhhHHhhc
Q 011237 290 LLAHENTMRRIG 301 (490)
Q Consensus 290 I~~~~~~~~~l~ 301 (490)
||++......+.
T Consensus 91 iygp~~~~~~l~ 102 (368)
T 3zwf_A 91 IYGPVGLRDFIW 102 (368)
T ss_dssp EEEETTHHHHHH
T ss_pred EEEcHHHHHHHH
Confidence 999988766554
No 70
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}
Probab=98.84 E-value=4.1e-09 Score=106.64 Aligned_cols=108 Identities=19% Similarity=0.168 Sum_probs=79.7
Q ss_pred EecCCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhhccC--C
Q 011237 227 VAQGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRIGKD--D 304 (490)
Q Consensus 227 li~g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l~~~--~ 304 (490)
++.|..+.||+... ....++++||+||.|.||+| |+..+. +++||+++.+...+... .
T Consensus 6 ~i~g~~i~vD~f~~-----------~~~~~i~ai~lTH~H~DHig-----gl~~l~----~~pVy~s~~t~~ll~~~l~~ 65 (336)
T 3zdk_A 6 LIPHTPIAVDFWSL-----------RRAGTARLFFLSHMHSDHTV-----GLSSTW----ARPLYCSPITAHLLHRHLQV 65 (336)
T ss_dssp ECTTSSEEESCCCH-----------HHHCSSCEEECCCCCGGGST-----TCSTTC----CSCEEECHHHHHHHHHHHCC
T ss_pred EeCCCCEeecCCcc-----------cCCCCCCEEEECCChHHHHC-----chHHHc----CCCEEecHHHHHHHHHhhhh
Confidence 34455788997642 12356789999999999999 888863 68999999988776531 1
Q ss_pred CCCCceecCCCceEEE-------CCEEEEEEeCCCCCCCCeEEEEC--CCCEEEEccccC
Q 011237 305 WSLGYTSVSGSEDICV-------GGQRLTVVFSPGHTDGHVALLHA--STNSLIVGDHCV 355 (490)
Q Consensus 305 ~~~~~~~~~~g~~l~l-------gg~~l~vi~tPGHT~g~i~l~~~--~~~vLftGD~l~ 355 (490)
....+..+..++.+.+ |+.+++++.+ ||++|++++.+. +.+++|+||+-+
T Consensus 66 ~~~~~~~~~~~~~~~i~~~~~~~g~~~v~~~~~-~H~~gs~~~~i~~~~~~i~~tGD~~~ 124 (336)
T 3zdk_A 66 SKQWIQALEVGESHVLPLDEIGQETMTVTLLDA-NHCPGSVMFLFEGYFGTILYTGDFRY 124 (336)
T ss_dssp CTTTEEECCTTSEEEEESSSSSSCEEEEEEEEC-SSSTTCEEEEEEETTEEEEECCSCCC
T ss_pred cccceEecCCCCeEEecCcccccCCEEEEEEEC-CCCcceEEEEEEeCCceEEEeCCCCC
Confidence 1123455666666655 7888988887 899999999875 457999999854
No 71
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=98.79 E-value=2.6e-08 Score=97.47 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=51.5
Q ss_pred CCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhH
Q 011237 218 SDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTM 297 (490)
Q Consensus 218 ~~~~~~~~~li~g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~ 297 (490)
..+..+++|+|+. +|||||......+.+.+...++. ++|++||.|.||+| |+..+ ++++||+++.+.
T Consensus 27 l~~~~G~s~lie~--iLiD~G~~~~l~~~l~~~gi~~~--~~IvlTH~H~DH~g-----gl~~l----~~~~v~~~~~~~ 93 (267)
T 3h3e_A 27 FESEHGFSVLVDS--VLFDTGKSDVFLKNARKLGIDLP--KDVLISHGHYDHAG-----GLLYL----SGKRVWLRKEAL 93 (267)
T ss_dssp CCCCSSCEEEETT--EEECCCSSSHHHHHHHHTTCCCC--SEEECSCSCHHHHG-----GGGGC----CSCEEEEEGGGG
T ss_pred ceeCcEeHHeeee--EEEECCCcHHHHHHHHHCCcCcC--CEEEECCCChhhhC-----CHHHh----cCCEEEECHHHH
Confidence 3456678888877 99999998644444444332222 79999999999999 99887 689999998765
Q ss_pred H
Q 011237 298 R 298 (490)
Q Consensus 298 ~ 298 (490)
.
T Consensus 94 ~ 94 (267)
T 3h3e_A 94 D 94 (267)
T ss_dssp S
T ss_pred H
Confidence 3
No 72
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4
Probab=98.65 E-value=2.8e-08 Score=94.42 Aligned_cols=134 Identities=17% Similarity=0.182 Sum_probs=73.1
Q ss_pred ceEEEec--CCeEEEcCCCCChHHHHHHHHHHhCCCceEEEecCCCccccCchhhccHHHHHHhCCCCEEEeChhhHHhh
Q 011237 223 NHRFVAQ--GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGEFIRGLSIIQKCNPDAILLAHENTMRRI 300 (490)
Q Consensus 223 ~~~~li~--g~~iLIDtG~~~~~~~~L~~~~~~~~~~~~IviTH~H~DH~G~a~~~G~~~l~~~~p~a~I~~~~~~~~~l 300 (490)
+++|+++ +..+|||||.+.. .+.....++.+|++||.|.||++. . .++ +++.++
T Consensus 20 ~~~~li~~~~~~iLiD~g~~~~------~~~~~~~~id~VliTH~H~DH~~~-----~-~l~---~~~~vi--------- 75 (220)
T 1vjn_A 20 HACFALEMEGKTIVTDPFDESV------GYPIPNVTADVVTESHQHFDHNAH-----H-LVK---GNFRVI--------- 75 (220)
T ss_dssp TTEEEEEETTEEEEESCCC-----------CCCCCBCSEEECSSCC---CGG-----G-GCB---SSCEEE---------
T ss_pred CCEEEEEECCEEEEEcCCCCcC------CCCcCCCCcCEEEECCCCCCCCCc-----h-Hhc---CCCEEE---------
Confidence 3455553 4589999997631 111123456799999999999982 1 221 234443
Q ss_pred ccCCCCCCceecCCCceEEECCEEEEEEeCCCCCC------CC-eEEEEC--CCCEEEEccccCCCC--------ccc--
Q 011237 301 GKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTD------GH-VALLHA--STNSLIVGDHCVGQG--------SAV-- 361 (490)
Q Consensus 301 ~~~~~~~~~~~~~~g~~l~lgg~~l~vi~tPGHT~------g~-i~l~~~--~~~vLftGD~l~~~~--------~~~-- 361 (490)
..+..+++++.+++.+.++ |+. |+ ++|.+. +.+++|+||+.+... ...
T Consensus 76 ------------~~~g~~~~~~~~I~~~~~~-H~~~~g~~~g~~~g~~i~~~g~~i~~~GDt~~~~~~~~~~~~~~~Dvl 142 (220)
T 1vjn_A 76 ------------DRPGAYTVNGVKIKGVETF-HDPSHGRERGKNIVFVFEGEGIKVCHLGDLGHVLTPAQVEEIGEIDVL 142 (220)
T ss_dssp ------------CSSEEEEETTEEEEEEEEE-EC-------CEEEEEEEEETTEEEEECTTCCSCCCHHHHHHHCCCSEE
T ss_pred ------------cCCCeEEECCEEEEEEeee-cCCCCCccCCCcEEEEEEECCeEEEEeCCCCCcchHHHHHhhCCCCEE
Confidence 1123678899888888665 655 44 666664 457999999965331 000
Q ss_pred -ccc--CCCCCHHHHHHHHHHHHcCCCCEEEcCCCCCC
Q 011237 362 -LDI--TAGGNMTDYFQSTYKFLELSPHALIPMHGRVN 396 (490)
Q Consensus 362 -~~~--~~~~~~~~~~~SL~~L~~l~~~~ilPgHG~~~ 396 (490)
++. ....+..+..+. ++.+.++.++|.|-...
T Consensus 143 il~~g~~~h~~~~~a~~~---~~~~~~k~vi~~H~~~~ 177 (220)
T 1vjn_A 143 LVPVGGTYTIGPKEAKEV---ADLLNAKVIIPMHYKTK 177 (220)
T ss_dssp EEECCSSSSCCHHHHHHH---HHHTTCSEEEEESCCCS
T ss_pred EEcCCCcCcCCHHHHHHH---HHhcCCCEEEEEecccc
Confidence 000 011233433333 34456788888887654
No 73
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=97.05 E-value=0.0011 Score=58.33 Aligned_cols=100 Identities=18% Similarity=0.298 Sum_probs=68.7
Q ss_pred CCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeec
Q 011237 15 NDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR 94 (490)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~ 94 (490)
+..||||+|.+..| .-|.||++.+++ +|. ..+++..++.++.|+...
T Consensus 22 ~~~e~LL~~r~~~~-------------~~W~lPgG~ve~--gEt------------------~~~aa~REl~EEtGl~~~ 68 (155)
T 3u53_A 22 NAIEFLLLQASDGI-------------HHWTPPKGHVEP--GED------------------DLETALRETQEEAGIEAG 68 (155)
T ss_dssp CSEEEEEEEESSSS-------------CCEECSEEECCS--SCC------------------HHHHHHHHHHHHHCCCGG
T ss_pred CCcEEEEEEecCCC-------------CCEECCeeeccC--CCC------------------HHHHHHHHHHHHHCCccc
Confidence 45699999876543 239999998875 444 367899999999999887
Q ss_pred cCcce-eecccccCCCCCCCCeeeEEEEEeEcCCCc-----cccccccccCCHHHHHHHHH
Q 011237 95 DGGEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----QILQEGCKWMSTQSCINCLA 149 (490)
Q Consensus 95 ~~~~~-~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-----~~e~~~~~W~~~~~~l~~~~ 149 (490)
...+. .+....... ......-+.||++....++ +.|.....|++++++++.+.
T Consensus 69 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~ea~~~~~ 127 (155)
T 3u53_A 69 QLTIIEGFKRELNYV--ARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQ 127 (155)
T ss_dssp GEEEEEEEEEEEEEE--ETTEEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHHHHC
T ss_pred cceeeeeEeeeeecC--CCcceeEEEEEEEEEeccCCccCCCcceeEEEEeEHHHHHHHcC
Confidence 54433 333333333 3344555566666665544 45888899999999988653
No 74
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=96.77 E-value=0.00084 Score=58.04 Aligned_cols=96 Identities=22% Similarity=0.300 Sum_probs=70.1
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|+. ++.|.||++.+++ +|. ..+++..++.++.|+.+..
T Consensus 14 ~~~vLL~~r~---------------~g~W~~PgG~ve~--gEt------------------~~~aa~RE~~EEtGl~~~~ 58 (134)
T 3i7u_A 14 DGEVLLIKTP---------------SNVWSFPKGNIEP--GEK------------------PEETAVREVWEETGVKGEI 58 (134)
T ss_dssp TTEEEEEECT---------------TSCEECCEEECCT--TCC------------------HHHHHHHHHHHHHSEEEEE
T ss_pred CCEEEEEEeC---------------CCcEECCeeEecC--CCC------------------HHHHHHHHHHHhcCceEEE
Confidence 4599999863 2469999998875 444 2678999999999998874
Q ss_pred C-cceeecccccCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHHHHHH
Q 011237 96 G-GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCINCL 148 (490)
Q Consensus 96 ~-~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l~~~ 148 (490)
. .+....++.+.. +......+.||++...+++ +.|.....|++++++.+.+
T Consensus 59 ~~~l~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~l 113 (134)
T 3i7u_A 59 LDYIGEIHYWYTLK--GERIFKTVKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLL 113 (134)
T ss_dssp EEEEEEEEEEEEET--TEEEEEEEEEEEEEEEEECCCCCTTSSEEEEEEHHHHHHHB
T ss_pred eeeeeeeeEEecCC--CceEEEEEEEEEEEEcCCcCcCChhheEEEEEEHHHHhhhc
Confidence 3 334444555555 4333445678998887776 4588889999999988764
No 75
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=96.69 E-value=0.0061 Score=53.32 Aligned_cols=113 Identities=19% Similarity=0.250 Sum_probs=76.3
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
+++|-|+ +.++||+|++..|.-+ .+...|.||++.++. +|. ..+++..++.
T Consensus 17 ~~vi~~~--~~~vLl~~r~~~~~~~-------~~~~~w~~PgG~ve~--gE~------------------~~~aa~RE~~ 67 (159)
T 1sjy_A 17 GVVLLNE--RGDILLVQEKGIPGHP-------EKAGLWHIPSGAVED--GEN------------------PQDAAVREAC 67 (159)
T ss_dssp EEEEBCT--TCCEEEEEESCC-----------CCCCCEECSEEECCT--TSC------------------HHHHHHHHHH
T ss_pred EEEEEeC--CCCEEEEEecccCcCC-------CCCCeEECCccccCC--CCC------------------HHHHHHHHHH
Confidence 4556654 3589999998765311 234689999998874 433 1467889999
Q ss_pred HHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc------cccccccccCCHHHHHHHHHccC
Q 011237 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN------QILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 87 ~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q------~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
++.|+.+....+.....+..+. + ..+.+.+|++..+.++ ..|.....|++++++.+.+....
T Consensus 68 EEtGl~~~~~~~l~~~~~~~~~--~--~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~ 135 (159)
T 1sjy_A 68 EETGLRVRPVKFLGAYLGRFPD--G--VLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAGQ 135 (159)
T ss_dssp HHHSCCEEEEEEEEEEEEECTT--S--CEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHTTC
T ss_pred HHHCccceeeEEEEEEecccCC--C--ceEEEEEEEEEccCCCccccCCCCceeEEEEecHHHHHHhhhccc
Confidence 9999988743332222222222 2 6788889998887664 45778899999999998877553
No 76
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=96.56 E-value=0.004 Score=53.57 Aligned_cols=105 Identities=17% Similarity=0.245 Sum_probs=69.1
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.+++|.+ +.++||+|++..+.. .....|.||++.++. +|. ..+++..++
T Consensus 9 v~~vi~~---~~~vLL~~r~~~~~~--------~~~g~w~lPgG~ve~--gE~------------------~~~aa~REl 57 (140)
T 3gwy_A 9 VAAVIRL---GEKYLCVQRGQTKFS--------YTSFRYEFPGGKVEE--GES------------------LQEALQREI 57 (140)
T ss_dssp EEEEEEE---TTEEEEEEC-----------------CCEECSEEECCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEe---CCEEEEEEecCCCCC--------CCCCeEECCCccCCC--CCC------------------HHHHHHHHH
Confidence 3555654 459999999866430 024589999987764 433 256788999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc--cccccccccCCHHHHHH
Q 011237 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--~~e~~~~~W~~~~~~l~ 146 (490)
.++.|+.+....+.....+.. +..++...+|++..+.+. ..|.....|++++++.+
T Consensus 58 ~EE~Gl~~~~~~~~~~~~~~~-----~~~~~~~~~f~~~~~~~~~~~~E~~~~~W~~~~el~~ 115 (140)
T 3gwy_A 58 MEEMDYVIEVGEKLLTVHHTY-----PDFEITMHAFLCHPVGQRYVLKEHIAAQWLSTREMAI 115 (140)
T ss_dssp HHHHCCCEEEEEEEEEEECCC-----SSCCEEEEEEEEEECCSCCCCCSSCEEEEECHHHHTT
T ss_pred HHhhCcEEEeceEEEEEEEEe-----CCceEEEEEEEEEecCCcccccccceeEeccHHHHhh
Confidence 999999887554433333322 246788899999988776 45778899999877643
No 77
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=96.46 E-value=0.0011 Score=62.42 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=80.5
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCC---------------ccccc----cccc--ccCCCCCccccccccCcCCCCccc
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFN---------------DEEYD----SYVD--SDLWDLPAIKLNHIQGEKSEPTIS 64 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~~ 64 (490)
++.++-|+.+ .++||+||.+||-+. .+.|+ .|-+ ...|.||++.+++ .+|.
T Consensus 39 V~vl~~~~~~-~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~-~gEs------ 110 (218)
T 3q91_A 39 VTVLLFNSSR-RSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQ-PGLS------ 110 (218)
T ss_dssp EEEEEEEGGG-TEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCS-SSCC------
T ss_pred EEEEEEECCC-CEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCC-CCCC------
Confidence 4555566653 499999999988540 00011 1112 3578888887764 1343
Q ss_pred cccccccccccchhhhHHHHHHHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCC------C--c--ccccc
Q 011237 65 IQGSEKINLGKFDIESALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLD------G--N--QILQE 134 (490)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~------~--q--~~e~~ 134 (490)
..+++..++.++.|+......+.+...+.+.+ +.. .....+|+|.... + . ..|..
T Consensus 111 ------------~~eaA~REl~EEtGl~~~~~~l~~l~~~~~~~--g~~-~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ 175 (218)
T 3q91_A 111 ------------LEEVACKEAWEECGYHLAPSDLRRVATYWSGV--GLT-GSRQTMFYTEVTDAQRSGPGGGLVEEGELI 175 (218)
T ss_dssp ------------HHHHHHHHHHHHHCBCCCGGGCEEEEEEEEC-----C-CEEEEEEEEEECGGGBCC---------CCE
T ss_pred ------------HHHHHHHHHHHHhCCccccCceEEEEEEecCC--Ccc-ceEEEEEEEEECCcccccCCCCCCCCCcEE
Confidence 26789999999999998666777777766655 333 4456777777432 1 1 56899
Q ss_pred ccccCCHHHHHHHHHccCC
Q 011237 135 GCKWMSTQSCINCLAEVKP 153 (490)
Q Consensus 135 ~~~W~~~~~~l~~~~~~~~ 153 (490)
...|++.+++++++.+.+-
T Consensus 176 ev~wv~l~el~~~i~~g~i 194 (218)
T 3q91_A 176 EVVHLPLEGAQAFADDPDI 194 (218)
T ss_dssp EEEEEEGGGHHHHHHCTTS
T ss_pred EEEEEEHHHHHHHHHcCCC
Confidence 9999999999999988754
No 78
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=96.45 E-value=0.0039 Score=53.24 Aligned_cols=109 Identities=18% Similarity=0.301 Sum_probs=71.4
Q ss_pred eeehhhcCCC-CCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHH
Q 011237 5 NVALILKNPL-NDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALN 83 (490)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (490)
..+++|-+.. ++.++||+|+++. ...|.+|++.+++ +|. ..+++..
T Consensus 5 ~~~~vi~~~~~~~~~vLl~~r~~~-------------~~~w~~PgG~ve~--gE~------------------~~~aa~R 51 (138)
T 1ktg_A 5 AAGLVIYRKLAGKIEFLLLQASYP-------------PHHWTPPKGHVDP--GED------------------EWQAAIR 51 (138)
T ss_dssp EEEEEEEEEETTEEEEEEEEESST-------------TCCEESSEEECCT--TCC------------------HHHHHHH
T ss_pred EEEEEEEEecCCCcEEEEEEccCC-------------CCcEeCCccccCC--CCC------------------HHHHHHH
Confidence 3445554442 2458999998621 2589999998875 444 2567999
Q ss_pred HHHHHcCCeeccCcce-eecccccCCCCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHHHHHHH
Q 011237 84 QILEQLGFGVRDGGEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSCINCL 148 (490)
Q Consensus 84 ~~l~~~gl~l~~~~~~-~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~l~~~ 148 (490)
++.++.|+.+....+. .+...++-. .+..+....||++.++.+. ..|.....|++++++.+.+
T Consensus 52 E~~EEtGl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~ 119 (138)
T 1ktg_A 52 ETKEEANITKEQLTIHEDCHETLFYE--AKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIA 119 (138)
T ss_dssp HHHHHHCCCGGGEEEEEEEEEEEEEE--ETTEEEEEEEEEEEECSCCCCCCCTTEEEEEEECHHHHHHHH
T ss_pred HHHHHHCCCccceEEeccccceEEEE--eCCCceEEEEEEEEecCCcccCCCchhcEeEeccHHHHHHhh
Confidence 9999999965433322 222222111 1135778889999887732 4677899999999988754
No 79
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=96.30 E-value=0.014 Score=50.77 Aligned_cols=105 Identities=19% Similarity=0.315 Sum_probs=73.3
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.+++|.|. +.++||+|++..++. ....|.||++.++. +|. ..+++..++
T Consensus 11 v~~vi~~~--~~~vLL~~r~~~~~~---------~~g~w~~PgG~ve~--gE~------------------~~~aa~REl 59 (153)
T 3grn_A 11 VYALIRNE--KGEFLLLRRSENSRT---------NAGKWDLPGGKVNP--DES------------------LKEGVAREV 59 (153)
T ss_dssp EEEEEECT--TCCEEEEEECTTCSS---------STTCEECSEEECCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEcC--CCcEEEEEEcCCCCC---------CCCeEECceeecCC--CCC------------------HHHHHHhhh
Confidence 45667654 348999998865332 35689999987764 333 256789999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHHHH
Q 011237 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l~ 146 (490)
.++.|+.+....+.....+..+ ..+....+|.+....+. ..|.....|++++++.+
T Consensus 60 ~EE~Gl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 118 (153)
T 3grn_A 60 WEETGITMVPGDIAGQVNFELT-----EKKVIAIVFDGGYVVADVKLSYEHIEYSWVSLEKILG 118 (153)
T ss_dssp HHHHCCCCCCCSEEEEEEEECS-----SCEEEEEEEEEEECCCCCCCCTTEEEEEEECHHHHTT
T ss_pred hhhhCcEeecceEEEEEEEecC-----CceEEEEEEEEEecCCcEecCCCcceEEEEEHHHhhh
Confidence 9999999886655444443333 35677788888777766 46788899999887643
No 80
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=96.23 E-value=0.01 Score=52.94 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=69.0
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
+.++-+ +.++||+||.++|. ....|.+|++.+++ +|. ..+++..++.
T Consensus 38 ~vii~~---~~~vLL~~~~r~~~----------~~~~w~lPgG~ve~--gEs------------------~~~aa~REl~ 84 (170)
T 1v8y_A 38 AVIALR---EGRMLFVRQMRPAV----------GLAPLEIPAGLIEP--GED------------------PLEAARRELA 84 (170)
T ss_dssp EEEEEE---TTEEEEEECCBTTT----------TBCCBBCSEEECCT--TCC------------------HHHHHHHHHH
T ss_pred EEEEEE---CCEEEEEEEEeCCC----------CCCEEECCccccCC--CCC------------------HHHHHHHHHH
Confidence 344444 45999999987762 25689999988874 444 2567999999
Q ss_pred HHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc-----cccccccccCCHHHHHHHHHccC
Q 011237 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----QILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 87 ~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-----~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
++.|+ .. .+.++..+...+ +. ....+.+|++...+++ ..|.....|++++++.+.+...+
T Consensus 85 EEtGl-~~--~~~~l~~~~~~~--~~-~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~ 149 (170)
T 1v8y_A 85 EQTGL-SG--DLTYLFSYFVSP--GF-TDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQRGE 149 (170)
T ss_dssp HHHSE-EE--EEEEEEEEESCT--TT-BCCEEEEEEEEEEEECC--------CEEEEECHHHHHHHHHTTS
T ss_pred HHHCC-Cc--CceeeEEEecCC--Cc-cccEEEEEEEEeccccCCCCCCCceEEEEEEEHHHHHHHHHCCC
Confidence 99999 43 344444443333 22 2334556666654322 46888999999999999887653
No 81
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=96.19 E-value=0.0035 Score=53.18 Aligned_cols=102 Identities=20% Similarity=0.280 Sum_probs=70.6
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.+++|.| +.++||+|++. ..|.+|++.++. +|. ..+++..++
T Consensus 7 ~~~vi~~---~~~vLl~~r~~---------------~~w~~PgG~ve~--gE~------------------~~~aa~RE~ 48 (134)
T 2pbt_A 7 AGGVLFK---DGEVLLIKTPS---------------NVWSFPKGNIEP--GEK------------------PEETAVREV 48 (134)
T ss_dssp EEEEEEE---TTEEEEEECTT---------------SCEECCEEECCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEE---CCEEEEEEeCC---------------CcEECCccccCC--CCC------------------HHHHHHHHH
Confidence 3455554 34999999864 789999987764 333 256788999
Q ss_pred HHHcCCeeccCcc-eeecccccCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHHHHH
Q 011237 86 LEQLGFGVRDGGE-WKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCINC 147 (490)
Q Consensus 86 l~~~gl~l~~~~~-~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l~~ 147 (490)
.++.|+.+....+ ..+.+..+.+ +........+|++....+. ..|.....|++++++.+.
T Consensus 49 ~EE~Gl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 112 (134)
T 2pbt_A 49 WEETGVKGEILDYIGEIHYWYTLK--GERIFKTVKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKL 112 (134)
T ss_dssp HHHHSEEEEEEEEEEEEEEEEEET--TEEEEEEEEEEEEEEEEECCCCCTTSSEEEEEEHHHHHHH
T ss_pred HHHHCCccEEeeeeeEEEEEeeCC--CcEEEEEEEEEEEEecCCCcCCCcceeEEEEEcHHHHHhh
Confidence 9999998875433 3333334433 3334566788888877665 237788999999998765
No 82
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=96.06 E-value=0.015 Score=50.28 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=67.8
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|+..+ ..|.+|++.++. +|. ..+++..++.++.|+.+..
T Consensus 19 ~~~vLl~~r~~~--------------g~w~~PgG~ve~--gE~------------------~~~aa~REl~EEtGl~~~~ 64 (149)
T 3son_A 19 NYQFGVLHRTDA--------------DVWQFVAGGGED--EEA------------------ISETAKRESIEELNLDVDV 64 (149)
T ss_dssp SEEEEEEEESSS--------------SCEECEEEECCT--TCC------------------HHHHHHHHHHHHHTCCSCC
T ss_pred CeEEEEEEEcCC--------------CCEeCCccccCC--CCC------------------HHHHHHHHHHHHhCCCccc
Confidence 458999998764 679999998876 554 2578999999999998876
Q ss_pred Cc--ceee-----cccccCCCCCCCCeeeEEEEEeEcCC--Cc---cccccccccCCHHHHHHHH
Q 011237 96 GG--EWKL-----WKCVEEPEFGPGLTIHTVYIMGKLLD--GN---QILQEGCKWMSTQSCINCL 148 (490)
Q Consensus 96 ~~--~~~~-----~~w~~~~~~~~~~~~dt~f~~a~lp~--~q---~~e~~~~~W~~~~~~l~~~ 148 (490)
.. +... .+|.-+. .......+|.+.++. +. ..|.....|++++++.+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 125 (149)
T 3son_A 65 KMYSLDSHASIPNFHFSFNK----PYVVPEYCFAIDLTSCSYQVTLSLEHSELRWVSYESAIQLL 125 (149)
T ss_dssp CEEEEEEEEEEEGGGTCSSS----CSEEEEEEEEEECTTTGGGCCCCTTEEEEEEECHHHHHHHC
T ss_pred ceEEEEeeecccceeeccCC----ceEeEEEEEEEEcCCCCCcccCCCceeeEEEeCHHHHHHHh
Confidence 41 1111 1222122 346667889999984 33 3688889999999988753
No 83
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=96.02 E-value=0.0098 Score=51.75 Aligned_cols=93 Identities=19% Similarity=0.335 Sum_probs=69.0
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|+.++ ....|.||++.++. +|. ..+++..++.++.|+.+..
T Consensus 15 ~~~vLl~~r~~~------------~~~~w~~PgG~ve~--gEs------------------~~~aa~REl~EEtGl~~~~ 62 (153)
T 3shd_A 15 EGKFLVVEETIN------------GKALWNQPAGHLEA--DET------------------LVEAAARELWEETGISAQP 62 (153)
T ss_dssp TTEEEEEEEEET------------TEEEEECSEEECCT--TCC------------------HHHHHHHHHHHHHCCCCCC
T ss_pred CCEEEEEEecCC------------CCCCEECCeEEeCC--CCC------------------HHHHHHHHHHHHHCccccc
Confidence 459999998721 24689999988875 444 2677899999999999887
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc-----cccccccccCCHHHH
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----QILQEGCKWMSTQSC 144 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-----~~e~~~~~W~~~~~~ 144 (490)
..+.....+..+. ...+-+.+|++....+. ..|.....|++++++
T Consensus 63 ~~~~~~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el 112 (153)
T 3shd_A 63 QHFIRMHQWIAPD----KTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEI 112 (153)
T ss_dssp CEEEEEEEECCTT----SCCEEEEEEEEECSSCCCCCCCSTTCCEEEEECHHHH
T ss_pred CcEEEEEEEecCC----CceEEEEEEEEEccccCcCCCCcccceeeEEecHHHh
Confidence 6665555555543 34566678888887653 568888999998887
No 84
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=96.02 E-value=0.014 Score=48.86 Aligned_cols=100 Identities=18% Similarity=0.163 Sum_probs=66.8
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.+.+|-|.. .++||+|++. ..|.+|++.++. +|. ..+++..++
T Consensus 5 ~~~vi~~~~--~~vLl~~r~~---------------g~w~~PgG~ve~--gE~------------------~~~aa~RE~ 47 (126)
T 1vcd_A 5 AGGVVFNAK--REVLLLRDRM---------------GFWVFPKGHPEP--GES------------------LEEAAVREV 47 (126)
T ss_dssp EEEEEECTT--SCEEEEECTT---------------SCEECCEECCCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEcCC--CEEEEEEECC---------------CCccCCcCcCCC--CCC------------------HHHHHHHHH
Confidence 344555543 3899999864 469999988774 333 146788999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHHHHH
Q 011237 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCINC 147 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l~~ 147 (490)
.++.|+.+....+..-.++..+ .......+|.+....++ ..|.....|++++++.+.
T Consensus 48 ~EE~Gl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~ 107 (126)
T 1vcd_A 48 WEETGVRAEVLLPLYPTRYVNP-----KGVEREVHWFLMRGEGAPRLEEGMTGAGWFSPEEARAL 107 (126)
T ss_dssp HHHHCCEEEEEEEEEEEEEECT-----TSCEEEEEEEEEEEESCCCCCTTCCEEEEECHHHHHHH
T ss_pred HHhhCcEeeeccEEeEEEEecC-----CceEEEEEEEEEEcCCCCCCCcceeeeEEcCHHHHHHh
Confidence 9999998875443322233322 23456677777665543 457788999999998765
No 85
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=95.90 E-value=0.006 Score=53.47 Aligned_cols=101 Identities=19% Similarity=0.277 Sum_probs=63.0
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
+++|.|. +.++||+|.+ ...|.||++.++. +|. ..+++..++.
T Consensus 25 ~~ii~~~--~~~vLL~~r~---------------~~~w~lPgG~ve~--gEs------------------~~~aa~REl~ 67 (153)
T 3eds_A 25 AAVIKNE--QGEILFQYPG---------------GEYWSLPAGAIEL--GET------------------PEEAVVREVW 67 (153)
T ss_dssp EEEEBCT--TCCEEEECC------------------CBBCSEEECCT--TSC------------------HHHHHHHHHH
T ss_pred EEEEEcC--CCeEEEEEcC---------------CCcEECCccccCC--CCC------------------HHHHHHHHHH
Confidence 4556553 3589997765 5789999988764 443 2567889999
Q ss_pred HHcCCeeccCcceeec-----ccccCCCCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHHHHH
Q 011237 87 EQLGFGVRDGGEWKLW-----KCVEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 87 ~~~gl~l~~~~~~~~~-----~w~~~~~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~l~ 146 (490)
++.|+.+....+.... ++.-+. +....+.+.+|.+....+. ..|.....|++++++.+
T Consensus 68 EEtGl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 134 (153)
T 3eds_A 68 EETGLKVQVKKQKGVFGGKEYRYTYSN--GDEVEYIVVVFECEVTSGELRSIDGESLKLQYFSLSEKPP 134 (153)
T ss_dssp HHHCEEEEEEEEEEEECSGGGEEECTT--SCEEEEEEEEEEEEEEEECCC-------CEEEECGGGCCC
T ss_pred HHHCccceeeeEEEEecccceeeecCC--CCeEEEEEEEEEEEecCCccccCCCcEEEEEEECHHHCch
Confidence 9999998754433221 333344 3333556778888877665 46778899999876543
No 86
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=95.81 E-value=0.0069 Score=55.50 Aligned_cols=115 Identities=15% Similarity=0.192 Sum_probs=76.4
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
+.++-|+. +.++||+||.++|.+.... -+...|.||++.++ +|. ..+++..++.
T Consensus 49 ~v~~~~~~-~~~vlLv~~~r~~~~~~~~----~~~~~w~lPgG~ve---gE~------------------~~~aa~REl~ 102 (191)
T 3o6z_A 49 TILLYNTK-KKTVVLIRQFRVATWVNGN----ESGQLIESCAGLLD---NDE------------------PEVCIRKEAI 102 (191)
T ss_dssp EEEEEETT-TTEEEEEEEECHHHHTTTC----TTCEEEECEEEECC---SSC------------------HHHHHHHHHH
T ss_pred EEEEEECC-CCEEEEEEcCCccccccCC----CCCeEEEecceEeC---CCC------------------HHHHHHHHHH
Confidence 34444554 4599999998877532110 04567999999887 665 2678999999
Q ss_pred HHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCC--------ccccccccccCCHHHHHHHHHccC
Q 011237 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--------NQILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 87 ~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~--------q~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
++.|+... .+.......+.+ + .......+|+|..... ...|.....|++.+++.+++.+.+
T Consensus 103 EEtG~~~~--~~~~l~~~~~~~--~-~~~~~~~~f~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~ 171 (191)
T 3o6z_A 103 EETGYEVG--EVRKLFELYMSP--G-GVTELIHFFIAEYSDNQRANAGGGVEDEAIEVLELPFSQALEMIKTGE 171 (191)
T ss_dssp HHC-CCCS--CEEEEEEEESCT--T-TBCCEEEEEEEECCTTCC--------CCSSEEEEEEHHHHHHHHHHSS
T ss_pred HHhCCccC--cEEEEEEEEeCC--C-ccCcEEEEEEEEEcccccccCCCCCCCcEEEEEEEEHHHHHHHHHcCC
Confidence 99999873 344444433333 2 2344567778776432 156888999999999999998764
No 87
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=95.60 E-value=0.029 Score=49.51 Aligned_cols=103 Identities=11% Similarity=0.208 Sum_probs=71.5
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
+++|.|..+ .++||+|++..+ + ...|.||++.++. +|. ..+++..++.
T Consensus 14 ~~vi~~~~~-~~vLL~~r~~~~---------~--~g~w~lPgG~ve~--gEs------------------~~~aa~REl~ 61 (161)
T 3exq_A 14 MVMVTDPET-QRVLVEDKVNVP---------W--KAGHSFPGGHVEV--GEP------------------CATAAIREVF 61 (161)
T ss_dssp EEEEBCTTT-CCEEEECCCCCT---------T--TCSBBCCCCBCCT--TSC------------------HHHHHHHHHH
T ss_pred EEEEEeCCC-CEEEEEEccCCC---------C--CCCEEccceecCC--CCC------------------HHHHHHHHHH
Confidence 455665432 389999876322 1 2469999987765 443 2677899999
Q ss_pred HHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc--cccccccccCCHHHH
Q 011237 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSC 144 (490)
Q Consensus 87 ~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--~~e~~~~~W~~~~~~ 144 (490)
++.|+.+....+.....+..+. ...++...+|.+....++ ..|.....|++++++
T Consensus 62 EEtGl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el 118 (161)
T 3exq_A 62 EETGLRLSGVTFCGTCEWFDDD---RQHRKLGLLYRASNFTGTLKASAEGQLSWLPITAL 118 (161)
T ss_dssp HHHCCEESCCEEEEEEEEECSS---CSSEEEEEEEEECCEESCCCGGGTTTEEEECGGGC
T ss_pred HhhCcEecCCcEEEEEecccCC---CCeEEEEEEEEEeccCCccCCCccceEEEeeHHHh
Confidence 9999998866655555555432 346788888888776665 567788999998765
No 88
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=95.48 E-value=0.064 Score=47.46 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=74.9
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCC-CCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWD-LPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
+.+|.|.. .++||+|.++.+.. ....|+ +|++.+++ +|. ..+++..++
T Consensus 38 ~v~i~~~~--~~vLl~~r~~~~~~---------~~g~w~~~PgG~ve~--gEs------------------~~~aa~REl 86 (171)
T 1q27_A 38 NAFLRNSQ--GQLWIPRRSPSKSL---------FPNALDVSVGGAVQS--GET------------------YEEAFRREA 86 (171)
T ss_dssp EEEEEETT--TEEEECCSCCSSSC---------CCCSCCCSEEEECSS--SSC------------------HHHHHHHHH
T ss_pred EEEEECCC--CeEEEEEecCCCCC---------CCCccccccCccccC--CCC------------------HHHHHHHHH
Confidence 34555543 38999886544322 246799 99998874 443 146788999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHHHHHHHHccCC
Q 011237 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSCINCLAEVKP 153 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~l~~~~~~~~ 153 (490)
.++.|+.+....+.++..+.+-. ..... ...+|.+.. .++ ..|.....|++++++.+.....+.
T Consensus 87 ~EEtGl~~~~~~l~~~~~~~~~~--~~~~~-~~~~f~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~ 154 (171)
T 1q27_A 87 REELNVEIDALSWRPLASFSPFQ--TTLSS-FMCVYELRS-DATPIFNPNDISGGEWLTPEHLLARIAAGEA 154 (171)
T ss_dssp HHHHSCTTSSSCEEEEEEECSSS--SCCSS-EEEEEEEEC-CCCCCSCTTTCSCCEEECHHHHHHHHHHHSS
T ss_pred HHHHCCcccccceEEEEEEeccC--CCCcc-EEEEEEEEE-CCccccCchhhheEEEecHHHHHHHHhcCCC
Confidence 99999998877666666655111 12223 556677776 443 467788999999999987776543
No 89
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=95.48 E-value=0.02 Score=49.54 Aligned_cols=102 Identities=15% Similarity=0.096 Sum_probs=65.6
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+||.++|. +...|.+|++.+++ +|. ..+++..++.++.|+...
T Consensus 16 ~~~vLLv~~~r~~~----------~~~~w~~PgG~ve~--gEt------------------~~~aa~REl~EEtGl~~~- 64 (145)
T 2w4e_A 16 QGEAVLIRQFRYPL----------RATITEIVAGGVEK--GED------------------LGAAAARELLEEVGGAAS- 64 (145)
T ss_dssp TSEEEEEEEEETTT----------TEEEEECEEEECCT--TCC------------------HHHHHHHHHHHHHCEECS-
T ss_pred CCEEEEEEEEecCC----------CCCEEEeCCccCCC--CCC------------------HHHHHHHHHHHhhCCccC-
Confidence 34799999976653 24579999999874 444 267899999999999764
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeE-cCCC----ccccccccccCCHHHHHHHHHccC
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGK-LLDG----NQILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~-lp~~----q~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
.+..+..+...+ +.. .....+|++. +..+ +..|.....|++++++.+.+...+
T Consensus 65 -~~~~l~~~~~~~--~~~-~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 122 (145)
T 2w4e_A 65 -EWVPLPGFYPQP--SIS-GVVFYPLLALGVTLGAAQLEDTETIERVVLPLAEVYRMLEAGE 122 (145)
T ss_dssp -EEEECCCBBSCT--TTC-CCEEEEEEEEEEEEC--------CEEEEEEEHHHHHHHHHHTC
T ss_pred -eEEEEecCcCCC--Ccc-CceEEEEEEEecccCCCCCCCCCeEEEEEEeHHHHHHHHHcCC
Confidence 233333333333 211 2334556555 3322 246888999999999999887654
No 90
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=95.25 E-value=0.028 Score=48.27 Aligned_cols=107 Identities=10% Similarity=0.148 Sum_probs=70.9
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.+.+|-|+. +.++||+|++.. ...|++|++.++. +|. ..+++..++
T Consensus 12 v~~~i~~~~-~~~vLl~~r~~~-------------~g~w~~PgG~ve~--gE~------------------~~~aa~RE~ 57 (150)
T 2o1c_A 12 ILVVIYAQD-TKRVLMLQRRDD-------------PDFWQSVTGSVEE--GET------------------APQAAMREV 57 (150)
T ss_dssp EEEEEEETT-TCEEEEEECSSS-------------TTCEESEEEECCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEeCC-CCEEEEEEecCC-------------CCceECCccccCC--CCC------------------HHHHHHHHH
Confidence 445565554 348999987653 3579999998874 444 256788999
Q ss_pred HHHcCCeeccCcc--ee---------ecccccCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHHHHH
Q 011237 86 LEQLGFGVRDGGE--WK---------LWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCINC 147 (490)
Q Consensus 86 l~~~gl~l~~~~~--~~---------~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l~~ 147 (490)
.++.|+.+....+ .. +..|...-. .......+.+|.+....++ ..|.....|++++++.+.
T Consensus 58 ~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 132 (150)
T 2o1c_A 58 KEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYA-PGVTRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAAL 132 (150)
T ss_dssp HHHHCCCHHHHTCCEEEEEEEEEEECCGGGGGGBC-TTCCEEEEEEEEEEESSCCCCCCSSSSCEEEEEHHHHHHH
T ss_pred HHHhCCCccccceeEEeeeceeeeeeecccccccC-CCCcceEEEEEEEEcCCCCCcChhHhhccEeecHHHHHhh
Confidence 9999998876422 11 112211110 1124577888888887765 368889999999998764
No 91
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=95.22 E-value=0.021 Score=49.14 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=66.0
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHH
Q 011237 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (490)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (490)
.+|-|.. +.++||+|. ++ ..|.+|++.++. +|. ..+++..++.+
T Consensus 23 ~vi~~~~-~~~vLl~~r--~~-------------g~w~~PgG~ve~--gE~------------------~~~aa~RE~~E 66 (148)
T 2azw_A 23 IIVSKPE-NNTMVLVQA--PN-------------GAYFLPGGEIEG--TET------------------KEEAIHREVLE 66 (148)
T ss_dssp EECEEGG-GTEEEEEEC--TT-------------SCEECSEEECCT--TCC------------------HHHHHHHHHHH
T ss_pred EEEECCC-CCeEEEEEc--CC-------------CCEeCCCcccCC--CCC------------------HHHHHHHHHHH
Confidence 4555442 458999985 21 589999988774 443 14678899999
Q ss_pred HcCCeeccCc-ceeecccccCCCCCC-CCeeeEEEEEeEcCCCc---cccccccccCCHHHHHHHH
Q 011237 88 QLGFGVRDGG-EWKLWKCVEEPEFGP-GLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCINCL 148 (490)
Q Consensus 88 ~~gl~l~~~~-~~~~~~w~~~~~~~~-~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l~~~ 148 (490)
+.|+.+.... +..+..+..+.. +. .....+.||.+....++ ..|.....|++++++.+.+
T Consensus 67 EtGl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~ 131 (148)
T 2azw_A 67 ELGISVEIGCYLGEADEYFYSNH-RQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLL 131 (148)
T ss_dssp HHSEEEEEEEEEEEEEEEEEETT-TTEEEEEEEEEEEEEEEEECSSCC-CCSEEEEECHHHHHHHB
T ss_pred HhCCeeEeeeEEEEEEEEEcCCC-CCcceEEEEEEEEEEcCcCCcCCCCceeeEEEeeHHHHHhhh
Confidence 9999887543 233333333320 11 12234777887776544 3566789999999987753
No 92
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=95.20 E-value=0.05 Score=47.39 Aligned_cols=108 Identities=14% Similarity=0.210 Sum_probs=69.8
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.+++|-|. +.++||+|++..| + ...|.||++.+++ +|. ..+++..++
T Consensus 21 v~~vi~~~--~~~vLl~~r~~~~-~----------~g~w~~PgG~ve~--gE~------------------~~~aa~REl 67 (160)
T 1rya_A 21 LDFIVENS--RGEFLLGKRTNRP-A----------QGYWFVPGGRVQK--DET------------------LEAAFERLT 67 (160)
T ss_dssp EEEEEECT--TSCEEEEEECSSS-S----------TTSEECCEEECCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEcC--CCEEEEEeccCCC-C----------CCEEECCccccCC--CCC------------------HHHHHHHHH
Confidence 44556553 4589999987532 1 4679999988764 333 246788999
Q ss_pred HHHcCCeeccCcce---eecccccCCCC--CCCCeeeEEEEEeEcCCCc----cccccccccCCHHHHHH
Q 011237 86 LEQLGFGVRDGGEW---KLWKCVEEPEF--GPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 86 l~~~gl~l~~~~~~---~~~~w~~~~~~--~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~l~ 146 (490)
.++.|+.+....+. .+.+..+.... ++...+-+.+|.+..+.++ ..|.....|++++++.+
T Consensus 68 ~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 137 (160)
T 1rya_A 68 MAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLA 137 (160)
T ss_dssp HHHHSSCCCGGGSEEEEEEEEEESSBTTBSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHH
T ss_pred HHHHCCCCCcccceEEEEEeEEEcccccCCCcCcEEEEEEEEEEcCccccccCCCccceEEEecHHHHhh
Confidence 99999986433222 33333332200 1122667788888887664 45888999999888765
No 93
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=95.17 E-value=0.016 Score=50.84 Aligned_cols=99 Identities=15% Similarity=0.237 Sum_probs=64.9
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|++..| ..|++|++.++. +|. ..+++..++.++.|+.+..
T Consensus 25 ~~~vLl~~r~~~~-------------g~w~~PgG~ve~--gE~------------------~~~aa~RE~~EEtGl~~~~ 71 (165)
T 1f3y_A 25 DKKIFAASRLDIP-------------DAWQMPQGGIDE--GED------------------PRNAAIRELREETGVTSAE 71 (165)
T ss_dssp TSCEEEEEETTEE-------------EEEECCEEECCT--TCC------------------HHHHHHHHHHHHHCCCSEE
T ss_pred CCcEEEEecCCCC-------------CcEECCeeccCC--CCC------------------HHHHHHHHHHHhhCCChhh
Confidence 3589999987322 579999998864 443 2567999999999997641
Q ss_pred CcceeecccccCCCCCCC--------------CeeeEEEEEeEcCCCc-----------cccccccccCCHHHHHHHHHc
Q 011237 96 GGEWKLWKCVEEPEFGPG--------------LTIHTVYIMGKLLDGN-----------QILQEGCKWMSTQSCINCLAE 150 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~--------------~~~dt~f~~a~lp~~q-----------~~e~~~~~W~~~~~~l~~~~~ 150 (490)
.......|++.. .+. ..-...||++.+..+. ..|.....|++++++.+.+..
T Consensus 72 -~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~ 148 (165)
T 1f3y_A 72 -VIAEVPYWLTYD--FPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVE 148 (165)
T ss_dssp -EEEECSSCCBCC--CCHHHHHHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCG
T ss_pred -hhcccccceeee--cCccccccccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhh
Confidence 222222333322 111 1125678888776543 347889999999999887644
No 94
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=95.13 E-value=0.017 Score=50.83 Aligned_cols=102 Identities=18% Similarity=0.308 Sum_probs=70.2
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.+++|.+ +.++||+|++..| ....|.||++.++. +|. ..+++..++
T Consensus 32 v~~vi~~---~~~vLL~~r~~~~-----------~~~~w~lPgG~ve~--gEs------------------~~~aa~REl 77 (157)
T 4dyw_A 32 CGAAIVR---DGRILLIKRKRAP-----------EAGCWGLPGGKVDW--LEP------------------VERAVCREI 77 (157)
T ss_dssp EEEEEEE---TTEEEEEEECSSS-----------STTCEECCEEECCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEE---CCEEEEEEecCCC-----------CCCEEECCcccCCC--CCC------------------HHHHHHHHH
Confidence 4455555 4599999998643 35689999988764 333 266788999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc-----cccccccccCCHHHH
Q 011237 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----QILQEGCKWMSTQSC 144 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-----~~e~~~~~W~~~~~~ 144 (490)
.++.|+.+....+.....+..+. ....+.+.+|.+..+.++ ..|.....|++++++
T Consensus 78 ~EEtGl~~~~~~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el 138 (157)
T 4dyw_A 78 EEELGIALERATLLCVVDHIDAA---NGEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFALDDL 138 (157)
T ss_dssp HHHHSCEEESCEEEEEEEEEETT---TTEEEEEEEEEESEEESCCCCSCTTTEEEEEEEETTSC
T ss_pred HHHHCcccccCcEEEEEEeeccC---CCcEEEEEEEEEEEcCCCcccCCCCcEeEEEEECHHHc
Confidence 99999998865544433333322 245667778888777665 356778899997664
No 95
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=94.84 E-value=0.033 Score=51.68 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=74.0
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHH
Q 011237 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (490)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (490)
.++-|+. +.++||+||.++|... +.-....|.+|++.+++ +|. ..+++..++.+
T Consensus 62 vl~~~~~-~~~vLLvrq~R~~~~~-----~~~~~~~welPgG~ve~--gE~------------------~~~aA~REl~E 115 (209)
T 1g0s_A 62 LLPFDPV-RDEVVLIEQIRIAAYD-----TSETPWLLEMVAGMIEE--GES------------------VEDVARREAIE 115 (209)
T ss_dssp EEEEETT-TTEEEEEEEECGGGGG-----GSSCSEEEECEEEECCT--TCC------------------HHHHHHHHHHH
T ss_pred EEEEECC-CCEEEEEEeecccCCC-----CCCCCeEEEeCcccCCC--CcC------------------HHHHHHHHHHH
Confidence 3444554 4499999998876431 12234679999999874 554 26789999999
Q ss_pred HcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcC----CC-----ccccccccccCCHHHHHHHHHccC
Q 011237 88 QLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLL----DG-----NQILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 88 ~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp----~~-----q~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
+.|+... .+.++....+.+ +- ..-..++|+|... .+ ++.|.....|++.+++.+++.+.+
T Consensus 116 EtGl~~~--~~~~l~~~~~~~--g~-~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~~g~ 184 (209)
T 1g0s_A 116 EAGLIVK--RTKPVLSFLASP--GG-TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGK 184 (209)
T ss_dssp HHCCCCC--CEEEEEEEESCT--TT-BCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTTS
T ss_pred HcCcccC--cEEEeEEEecCC--Cc-cCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHHHHcCC
Confidence 9999774 344444433333 21 1234567777742 22 145677899999999999988764
No 96
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=94.79 E-value=0.023 Score=51.10 Aligned_cols=96 Identities=14% Similarity=0.069 Sum_probs=66.5
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|+..++ ....|.||++.++. +|. ..+++..++.++.|+.+..
T Consensus 35 ~~~vLL~~r~~~~-----------~~g~W~lPgG~ve~--gEs------------------~~~aa~REl~EEtGl~~~~ 83 (176)
T 3q93_A 35 PQRVLLGMKKRGF-----------GAGRWNGFGGKVQE--GET------------------IEDGARRELQEESGLTVDA 83 (176)
T ss_dssp SSEEEEEEECSST-----------TTTSEECEEEECCT--TSC------------------HHHHHHHHHHHHHSCEESC
T ss_pred CCEEEEEEEcCCC-----------CCCeEECceecCCC--CCC------------------HHHHHHHHHHHHHCCccee
Confidence 4599999886543 25789999988764 333 2667889999999999875
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc--cccccccccCCHHHHH
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSCI 145 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--~~e~~~~~W~~~~~~l 145 (490)
..+.....+.. . +.+..+...+|++....++ ..|.....|++++++.
T Consensus 84 ~~~l~~~~~~~-~--~~~~~~~~~~f~~~~~~~~~~~~e~~~~~W~~~~el~ 132 (176)
T 3q93_A 84 LHKVGQIVFEF-V--GEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIP 132 (176)
T ss_dssp CEEEEEEEEEE-T--TCSCEEEEEEEEESCEESCCCCCSSEEEEEEETTCCC
T ss_pred eEEEEEEEEEc-C--CCCcEEEEEEEEEECCCCCcCCCcceeeEEeeHHHcc
Confidence 44333333332 2 3356778888988876665 4566677999977653
No 97
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=94.77 E-value=0.045 Score=46.44 Aligned_cols=96 Identities=18% Similarity=0.278 Sum_probs=62.9
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|++..+.+ ..+|+||++.++. +|. ..+++..++.++.|+.+..
T Consensus 19 ~~~vLl~~r~~~~~~----------~g~w~lPgG~ve~--gE~------------------~~~aa~RE~~EE~Gl~~~~ 68 (140)
T 2rrk_A 19 DGKILLAQRPAQSDQ----------AGLWEFAGGKVEP--DES------------------QRQALVRELREELGIEATV 68 (140)
T ss_dssp TTEEEEEECCSSCSC----------CCCEECCEEECCT--TSC------------------HHHHHHHHHHHHSCEEEEC
T ss_pred CCEEEEEEcCCCCCC----------CCEEECCceecCC--CCC------------------HHHHHHHHHHHHHCCeeec
Confidence 458999998654322 4689999987764 333 2566888999999998865
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc--cccccccccCCHHHHHH
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--~~e~~~~~W~~~~~~l~ 146 (490)
..+..-..+..+ .+.....+|.+....++ ..|.....|++++++.+
T Consensus 69 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 116 (140)
T 2rrk_A 69 GEYVASHQREVS-----GRIIHLHAWHVPDFHGTLQAHEHQALVWCSPEEALQ 116 (140)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEESEEEECCCCSSCSCEEEECHHHHTT
T ss_pred ccEEEEEEEecC-----CcEEEEEEEEEEeeCCCcCCCccceeEEeCHHHHhh
Confidence 433222222221 34667778887765543 45667889999877643
No 98
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=94.74 E-value=0.037 Score=47.82 Aligned_cols=98 Identities=19% Similarity=0.243 Sum_probs=70.0
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|++.++. ...|.||++.+++ +|. ..+++..++.++.|+.+..
T Consensus 18 ~~~vLl~~r~~~~~-----------~~~w~lPgG~ve~--gE~------------------~~~aa~RE~~EEtGl~~~~ 66 (153)
T 2b0v_A 18 DDKYLLVEEIPRGT-----------AIKLNQPAGHLEP--GES------------------IIQACSREVLEETGHSFLP 66 (153)
T ss_dssp TTEEEEEEECSSSS-----------CCEEECSEEECCT--TSC------------------HHHHHHHHHHHHHSEEEEE
T ss_pred CCEEEEEEEcCCCC-----------CCeEECCCcCcCC--CCC------------------HHHHHHHHHHHhhCcEecc
Confidence 45999999976542 3579999998874 443 1567899999999999886
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc-----cccccccccCCHHHHHHH
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----QILQEGCKWMSTQSCINC 147 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-----~~e~~~~~W~~~~~~l~~ 147 (490)
..+.....|..+. ....+-..+|++....+. ..|.....|++++++.+.
T Consensus 67 ~~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 120 (153)
T 2b0v_A 67 EVLTGIYHWTCAS---NGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAK 120 (153)
T ss_dssp EEEEEEEEEEETT---TTEEEEEEEEEEEEEEECTTSCCCTTEEEEEEEEHHHHHHT
T ss_pred ceEEEEEEEeCCC---CCcEEEEEEEEEEeCCCCCCCCCCCCeeeEEEecHHHHhhh
Confidence 5544444444433 234566677888776543 467788999999998775
No 99
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=94.73 E-value=0.027 Score=50.02 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=64.7
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHH
Q 011237 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (490)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (490)
..+.+|.+ +.++||+||... ...|.+|++.++. +|. ..+++..+
T Consensus 25 ~v~~ii~~---~~~vLL~~r~~~-------------~~~w~~PgG~ve~--gEs------------------~~~aa~RE 68 (171)
T 3id9_A 25 RVTGILIE---DEKVLLVKQKVA-------------NRDWSLPGGRVEN--GET------------------LEEAMIRE 68 (171)
T ss_dssp EEEEEEEE---TTEEEEEECSST-------------TCCEECCEEECCT--TCC------------------HHHHHHHH
T ss_pred EEEEEEEE---CCEEEEEEEECC-------------CCeEECCCccCCC--CCC------------------HHHHHHHH
Confidence 34555553 459999999762 6789999988764 433 25678999
Q ss_pred HHHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc---------cccccccccCCHHHHHH
Q 011237 85 ILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---------QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 85 ~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---------~~e~~~~~W~~~~~~l~ 146 (490)
+.++.|+.+....+.....+ +. ... .....+|.+....+. ..|.....|++++++.+
T Consensus 69 l~EEtGl~~~~~~~~~~~~~--~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 134 (171)
T 3id9_A 69 MREETGLEVKIKKLLYVCDK--PD--ASP-SLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSY 134 (171)
T ss_dssp HHHHHCCCEEEEEEEEEEEE--TT--SSS-CEEEEEEEEEEC-------------CCCCCEEEEETGGGGG
T ss_pred HHHHHCCccccceEEEEEcc--cC--CCC-cEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhh
Confidence 99999999875544433322 22 222 344455666555444 25778899999888654
No 100
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=94.54 E-value=0.034 Score=49.98 Aligned_cols=102 Identities=18% Similarity=0.097 Sum_probs=69.6
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+||.++|. +...|.+|++.+++ +|. ..+++..++.++.|+.+.
T Consensus 52 ~~~vLL~~r~~~~~----------~~~~w~~PgG~ve~--gEs------------------~~~aa~REl~EEtGl~~~- 100 (182)
T 2yvp_A 52 RGTALLVRQYRHPT----------GKFLLEVPAGKVDE--GET------------------PEAAARRELREEVGAEAE- 100 (182)
T ss_dssp TSEEEEEEEEEGGG----------TEEEEECCEEECCT--TCC------------------HHHHHHHHHHHHHCEECS-
T ss_pred CCEEEEEEeccCCC----------CCcEEEeccccCCC--CcC------------------HHHHHHHHHHHHhCCCcc-
Confidence 34899999976542 35789999998874 444 256799999999999765
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcC--CC----ccccccccccCCHHHHHHHHHccC
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLL--DG----NQILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp--~~----q~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
.+..+..+...+ +. ....+.+|++... .+ +..|.....|++++++.+.+...+
T Consensus 101 -~~~~l~~~~~~~--~~-~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~ 159 (182)
T 2yvp_A 101 -TLIPLPSFHPQP--SF-TAVVFHPFLALKARVVTPPTLEEGELLESLELPLTEVYALLAKGE 159 (182)
T ss_dssp -CEEECCCBCSCT--TT-BCCEEEEEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHHHHTTC
T ss_pred -cEEEEEEEeCCC--Cc-cccEEEEEEEeccccCCCCCCCCCceEEEEEEEHHHHHHHHHcCC
Confidence 344444443333 22 2344556666532 12 256888999999999999887654
No 101
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=94.52 E-value=0.06 Score=49.32 Aligned_cols=104 Identities=16% Similarity=0.233 Sum_probs=64.5
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHH
Q 011237 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (490)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (490)
.+|-+.. +.++||+|...| ....|.||++.++. +|. ..+++..++.+
T Consensus 31 ~~v~~~~-~~~vLL~~r~~~------------~~g~w~lPGG~ve~--gEs------------------~~~aA~REl~E 77 (199)
T 3h95_A 31 GAVFDES-TRKILVVQDRNK------------LKNMWKFPGGLSEP--EED------------------IGDTAVREVFE 77 (199)
T ss_dssp EEEEETT-TTEEEEEEESSS------------STTSBBCCEEECCT--TCC------------------HHHHHHHHHHH
T ss_pred EEEEeCC-CCEEEEEEEcCC------------CCCCEECCccccCC--CCC------------------HHHHHHHHHHH
Confidence 3444444 348999987543 15789999998874 554 26789999999
Q ss_pred HcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc------cccccccccCCHHHHHHH
Q 011237 88 QLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN------QILQEGCKWMSTQSCINC 147 (490)
Q Consensus 88 ~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q------~~e~~~~~W~~~~~~l~~ 147 (490)
+.|+.+....+..+..+...+ +..... +.||++.+..+. ..|...+.|++.+++.+.
T Consensus 78 EtGl~~~~~~l~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 140 (199)
T 3h95_A 78 ETGIKSEFRSVLSIRQQHTNP--GAFGKS-DMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKT 140 (199)
T ss_dssp HHCCCEEEEEEEEEEECC------------CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHC
T ss_pred HhCCccccceEEEEEeeecCC--CCceeE-EEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhh
Confidence 999998865555443333333 211222 345555543222 468899999999888764
No 102
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=94.41 E-value=0.054 Score=46.63 Aligned_cols=96 Identities=16% Similarity=0.230 Sum_probs=68.2
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|++..+. ...+|.||++.++. +|. ..+++..++.++.|+.+..
T Consensus 32 ~~~vLl~~r~~~~~----------~~g~w~~PgG~ve~--gE~------------------~~~aa~RE~~EE~Gl~~~~ 81 (153)
T 3ees_A 32 DGKILVGQRPENNS----------LAGQWEFPGGKIEN--GET------------------PEEALARELNEELGIEAEV 81 (153)
T ss_dssp TTEEEEEECCTTST----------TTTCEECSEEECCT--TCC------------------HHHHHHHHHHHHHSCEEEC
T ss_pred CCEEEEEEeCCCCC----------CCCeEECCceeeCC--CCC------------------HHHHHHHHHHHHHCCcccc
Confidence 45999999875421 24689999988763 222 2567888999999999886
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc--cccccccccCCHHHHHH
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--~~e~~~~~W~~~~~~l~ 146 (490)
..+.....+..+ .+.+...+|.+...+++ ..|.....|++.+++.+
T Consensus 82 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 129 (153)
T 3ees_A 82 GELKLACTHSYG-----DVGILILFYEILYWKGEPRAKHHMMLEWIHPEELKH 129 (153)
T ss_dssp CCEEEEEEEEET-----TEEEEEEEEEECEEESCCCCSSSSEEEEECGGGGGG
T ss_pred CceEEEEEEecC-----CCeEEEEEEEEEECCCCcCCCccceEEEecHHHhhh
Confidence 665544444333 35777889998887765 56778899999877543
No 103
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=94.33 E-value=0.037 Score=51.36 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=69.0
Q ss_pred hcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHc
Q 011237 10 LKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQL 89 (490)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (490)
+.+..+..++||+||.++|. +...|.||++.+++ +|. ..+++..++.++.
T Consensus 70 ~~~~~~~~~vlLv~q~R~~~----------~~~~welPgG~ve~--gEs------------------~~~aA~REl~EEt 119 (212)
T 2dsc_A 70 LQRTLHYECIVLVKQFRPPM----------GGYCIEFPAGLIDD--GET------------------PEAAALRELEEET 119 (212)
T ss_dssp EECTTSCCEEEEEEEEEGGG----------TEEEEECCEEECCT--TCC------------------HHHHHHHHHHHHH
T ss_pred EeCCCCCcEEEEEEeecCCC----------CCcEEECCccccCC--CCC------------------HHHHHHHHHHHHh
Confidence 44443345899999987763 34579999999874 444 2678999999999
Q ss_pred CCeeccCcceeecccccCCCCCCCCeeeEEEEEeEc--C-------CC--ccccccccccCCHHHHHHHHHcc
Q 011237 90 GFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKL--L-------DG--NQILQEGCKWMSTQSCINCLAEV 151 (490)
Q Consensus 90 gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~l--p-------~~--q~~e~~~~~W~~~~~~l~~~~~~ 151 (490)
|+......+ ...+.+.+ +.. ....++|++.. . .. +..|.....|++.+++.+++...
T Consensus 120 Gl~~~~~~~--l~~~~~~~--~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 187 (212)
T 2dsc_A 120 GYKGDIAEC--SPAVCMDP--GLS-NCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQRLDAL 187 (212)
T ss_dssp CCCCEEEEE--CCCEESCT--TTB-CCEEEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHHHHHHH
T ss_pred CCCccceEE--eccEEcCC--Ccc-CceEEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHHHHHhc
Confidence 998653222 22222333 211 22345565552 1 11 25688899999999999988743
No 104
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=94.23 E-value=0.048 Score=46.84 Aligned_cols=106 Identities=20% Similarity=0.357 Sum_probs=65.9
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
+.+|-|.. +.++||+|+.. ...|.||++.++. +|. ..+++..++.
T Consensus 8 ~~~i~~~~-~~~vLl~~r~~--------------~g~w~~PgG~ve~--gEs------------------~~~aa~RE~~ 52 (146)
T 2jvb_A 8 GAAIFNEN-LSKILLVQGTE--------------SDSWSFPRGKISK--DEN------------------DIDCCIREVK 52 (146)
T ss_dssp EEEEBCTT-SSEEEEECCSS--------------SSCCBCCEECCCS--SSC------------------HHHHHHHHHH
T ss_pred EEEEEeCC-CCEEEEEEEcC--------------CCcEECCcccCCC--CCC------------------HHHHHHHHHH
Confidence 44454443 35899999652 3689999988763 443 2567999999
Q ss_pred HHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCC---c---cccccccccCCHHHHHHHHHccC
Q 011237 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---N---QILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 87 ~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~---q---~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
++.|+.+.. +....++.+.. .....+. .|++..+... . ..|.....|++++++.+.+....
T Consensus 53 EEtGl~~~~--~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~ 119 (146)
T 2jvb_A 53 EEIGFDLTD--YIDDNQFIERN--IQGKNYK-IFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSN 119 (146)
T ss_dssp HHTSCCCSS--SSCSSCEEEEE--ETTEEEE-EEEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGCSS
T ss_pred HHHCCCchH--hcccccccccc--cCCceEE-EEEEEeccccccCCcCCcchhheeEEeEHHHHHhhhcccc
Confidence 999998763 23334444432 1222332 3333333321 1 46788999999999888665543
No 105
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=94.10 E-value=0.022 Score=51.90 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=65.2
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|++. ...|.||++.++. +|. ..+++..++.++.|+.+..
T Consensus 14 ~~~vLL~~r~~--------------~g~W~lPGG~ve~--gEs------------------~~~aa~REl~EEtGl~~~~ 59 (188)
T 3fk9_A 14 HDQVLLLQKPR--------------RGWWVAPGGKMEA--GES------------------ILETVKREYWEETGITVKN 59 (188)
T ss_dssp TTEEEEEECTT--------------TCCEECCEEECCT--TCC------------------HHHHHHHHHHHHHSCEESS
T ss_pred CCEEEEEEeCC--------------CCeEECCeecccC--CCC------------------HHHHHHHHHHHHHCCCCCC
Confidence 45999999731 4689999988764 333 2567899999999999887
Q ss_pred CcceeecccccCCCCCCC--CeeeEEEEEeEcCCCc---cccccccccCCHHHH
Q 011237 96 GGEWKLWKCVEEPEFGPG--LTIHTVYIMGKLLDGN---QILQEGCKWMSTQSC 144 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~--~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~ 144 (490)
..+.....+..+. +.. ..+.+.+|.+....++ ..|.....|++++++
T Consensus 60 ~~~~~~~~~~~~~--~~~~~~~~~~~~f~a~~~~~~~~~~~e~~~~~W~~~~el 111 (188)
T 3fk9_A 60 PELKGIFSMVIFD--EGKIVSEWMLFTFKATEHEGEMLKQSPEGKLEWKKKDEV 111 (188)
T ss_dssp CEEEEEEEEEEEE--TTEEEEEEEEEEEEESCEESCCCSEETTEEEEEEEGGGG
T ss_pred ceEEEEEEEEecC--CCcceEEEEEEEEEEECCCCCCcCCCCCEeEEEEEHHHh
Confidence 6555444554433 221 3346788888877776 346678999998775
No 106
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=94.03 E-value=0.088 Score=44.87 Aligned_cols=105 Identities=20% Similarity=0.295 Sum_probs=70.3
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
+.+|.|. +.++||+|++.... -..+|.||++.++. +|. ..+++..++.
T Consensus 12 ~~vi~~~--~~~vLl~~r~~~~~----------~~g~w~lPgG~ve~--gE~------------------~~~aa~RE~~ 59 (144)
T 3r03_A 12 AAALIDP--DGRVLLAQRPPGKS----------LAGLWEFPGGKLEP--GET------------------PEAALVRELA 59 (144)
T ss_dssp EEEEBCT--TSCEEEEECCTTSS----------STTCEECSEEECCT--TCC------------------HHHHHHHHHH
T ss_pred EEEEEcC--CCEEEEEEeCCCCC----------CCCcEECCCcEecC--CCC------------------HHHHHHHHHH
Confidence 4455543 34899998764321 24679999987764 333 2567889999
Q ss_pred HHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc--cccccccccCCHHHHHH
Q 011237 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 87 ~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--~~e~~~~~W~~~~~~l~ 146 (490)
++.|+.+....+...... ... ....+....+|.+....+. ..|.....|++.+++.+
T Consensus 60 EE~Gl~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 118 (144)
T 3r03_A 60 EELGVDTRASCLAPLAFA-SHS--YDTFHLLMPLYACRSWRGRATAREGQTLAWVRAERLRE 118 (144)
T ss_dssp HHHCCBCCGGGCEEEEEE-EEE--CSSSEEEEEEEEECCCBSCCCCCSSCEEEEECGGGGGG
T ss_pred HHhCceeeccceEEEEee-ecc--CCCeEEEEEEEEEEecCCccCCCCcceEEEEeHHHhcc
Confidence 999999887654444222 112 2346788889998887665 46778899999777533
No 107
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=93.91 E-value=0.031 Score=48.57 Aligned_cols=100 Identities=14% Similarity=0.229 Sum_probs=65.2
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.+++|.+ +.++||+|+ ...|.||++.+++ +|. ..+++..++
T Consensus 22 ~~~ii~~---~~~vLl~~r----------------~~~w~lPgG~ve~--gE~------------------~~~aa~REl 62 (154)
T 2pqv_A 22 ATALIVQ---NHKLLVTKD----------------KGKYYTIGGAIQV--NES------------------TEDAVVREV 62 (154)
T ss_dssp EEECCEE---TTEEEEEEE----------------TTEEECEEEECBT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEE---CCEEEEEec----------------CCeEECcccCcCC--CCC------------------HHHHHHHHH
Confidence 3445553 459999998 3469999998774 443 256789999
Q ss_pred HHHcCCeeccCcceeec-ccccCCCCCCCCeeeEEEEEeEcCCCc------cccccccccCCHHHHHH
Q 011237 86 LEQLGFGVRDGGEWKLW-KCVEEPEFGPGLTIHTVYIMGKLLDGN------QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~-~w~~~~~~~~~~~~dt~f~~a~lp~~q------~~e~~~~~W~~~~~~l~ 146 (490)
.++.|+.+....+.... +..+.. +..-..-+.+|++.++.+. ..|.....|++++++.+
T Consensus 63 ~EEtGl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 128 (154)
T 2pqv_A 63 KEELGVKAQAGQLAFVVENRFEVD--GVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQN 128 (154)
T ss_dssp HHHHCCCEEEEEEEEEEEEEEEET--TEEEEEEEEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGG
T ss_pred HHHhCCeeeeceEEEEEeeeecCC--CCcceEEEEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhh
Confidence 99999998865544332 222322 2111233567888887664 23567899999877644
No 108
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=93.84 E-value=0.062 Score=45.73 Aligned_cols=103 Identities=18% Similarity=0.175 Sum_probs=65.3
Q ss_pred eehhhcCCCCCce--eEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHH
Q 011237 6 VALILKNPLNDSE--FLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALN 83 (490)
Q Consensus 6 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (490)
.+++|-+-.++.+ +||+|++..|. .|.||++.++. +|. ..+++..
T Consensus 12 v~~vi~~~~~~~~~~vLl~~r~~~~~-------------~w~~PgG~ve~--gE~------------------~~~aa~R 58 (139)
T 2yyh_A 12 TDVIIRLWDGENFKGIVLIERKYPPV-------------GLALPGGFVEV--GER------------------VEEAAAR 58 (139)
T ss_dssp EEEEEEEEETTEEEEEEEEEECSSSC-------------SEECCEEECCT--TCC------------------HHHHHHH
T ss_pred EEEEEEEEcCCCcEEEEEEEecCCCC-------------cEECccccCCC--CCC------------------HHHHHHH
Confidence 3444544222345 99999976542 29999998874 333 2577999
Q ss_pred HHHHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHHH
Q 011237 84 QILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCI 145 (490)
Q Consensus 84 ~~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l 145 (490)
++.++.|+.+....+. ..+..+. .++....-+.+|++.. .+. ..|.....|++++++.
T Consensus 59 E~~EEtGl~~~~~~~~--~~~~~~~-~~~~~~~~~~~f~~~~-~~~~~~~~e~~~~~W~~~~el~ 119 (139)
T 2yyh_A 59 EMREETGLEVRLHKLM--GVYSDPE-RDPRAHVVSVVWIGDA-QGEPKAGSDAKKVKVYRLEEIP 119 (139)
T ss_dssp HHHHHHCCCCEEEEEE--EEECCTT-SCTTSCEEEEEEEEEE-ESCCCCCTTEEEEEEECTTSCC
T ss_pred HHHHHHCCCcccceEE--EEECCCC-cCCCceEEEEEEEEec-CCccCCCCCcceEEEEEHHHCC
Confidence 9999999987643332 2222222 1333456677888877 443 4477789999977654
No 109
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=93.78 E-value=0.049 Score=49.48 Aligned_cols=99 Identities=21% Similarity=0.254 Sum_probs=68.6
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.++||.+ +.++||+|+..+|. ...|.||++.++. +|. ..+++..++
T Consensus 43 v~~ii~~---~~~vLL~~r~~~~~-----------~g~w~lPgG~ve~--gEs------------------~~~aa~REl 88 (189)
T 3cng_A 43 VGCIPEW---ENKVLLCKRAIAPY-----------RGKWTLPAGFMEN--NET------------------LVQGAARET 88 (189)
T ss_dssp EEEEEEE---TTEEEEEEESSSSS-----------TTCEECSEEECCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEe---CCEEEEEEccCCCC-----------CCeEECceeeccC--CCC------------------HHHHHHHHH
Confidence 3445554 45999999987642 2479999998874 443 256799999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHHH
Q 011237 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCI 145 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l 145 (490)
.++.|+.+....+.....+ +. ...-+.+|++....+. ..|.....|++++++.
T Consensus 89 ~EEtGl~~~~~~~~~~~~~--~~-----~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~ 144 (189)
T 3cng_A 89 LEEANARVEIRELYAVYSL--PH-----ISQVYMLFRAKLLDLDFFPGIESLEVRLFGEQEIP 144 (189)
T ss_dssp HHHHCCCEEEEEEEEEEEE--GG-----GTEEEEEEEEEECCSCCCCCTTEEEEEEECTTTCC
T ss_pred HHHHCCccccceeEEEEec--CC-----CcEEEEEEEEEeCCCccCCCccceeEEEECHHHcC
Confidence 9999999876554433222 22 3556778888887665 4577789999977653
No 110
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=93.52 E-value=0.048 Score=52.89 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=66.8
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.++||-|+. +.++||+||...| ..|.+|++.+++ ||. ..+++..++
T Consensus 104 v~avv~~~~-~~~vLLv~r~~~~-------------g~W~lPgG~ve~--gEs------------------~~eAA~REl 149 (271)
T 2a6t_A 104 RGAIMLDMS-MQQCVLVKGWKAS-------------SGWGFPKGKIDK--DES------------------DVDCAIREV 149 (271)
T ss_dssp EEEEEBCSS-SSEEEEEEESSTT-------------CCCBCSEEECCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEECC-CCEEEEEEEeCCC-------------CeEECCcccCCC--CcC------------------HHHHHHHHH
Confidence 466777764 3499999997642 469999999874 554 267899999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeE-cCCC------ccccccccccCCHHHHHHHH
Q 011237 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGK-LLDG------NQILQEGCKWMSTQSCINCL 148 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~-lp~~------q~~e~~~~~W~~~~~~l~~~ 148 (490)
.++.|+.+.. +.....|..+. ... .+ .++|++. .+.. +..|...+.|++++++.+..
T Consensus 150 ~EEtGl~~~~--l~~~~~~~~~~--~~~-~~-~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 213 (271)
T 2a6t_A 150 YEETGFDCSS--RINPNEFIDMT--IRG-QN-VRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFK 213 (271)
T ss_dssp HHHHCCCCTT--TCCTTCEEEEE--ETT-EE-EEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC
T ss_pred HHHhCCCcee--eeeeeeeccCC--cCC-ce-EEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHHH
Confidence 9999998876 33444565443 222 23 3444444 3322 24588889999999876643
No 111
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=93.50 E-value=0.037 Score=50.86 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=67.4
Q ss_pred eeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccCc
Q 011237 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (490)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~ 97 (490)
++||+||.++|. +...|.||++.+++ +|. ..+++..++.++.|+....
T Consensus 61 ~vLLvrq~r~~~----------~~~~welPgG~ve~--gEs------------------~~~aA~REl~EEtGl~~~~-- 108 (198)
T 1vhz_A 61 HLILIREYAVGT----------ESYELGFSKGLIDP--GES------------------VYEAANRELKEEVGFGAND-- 108 (198)
T ss_dssp EEEEEEEEETTT----------TEEEEECEEEECCT--TCC------------------HHHHHHHHHHHHHSEEEEE--
T ss_pred EEEEEEcccCCC----------CCcEEEeCcccCCC--CcC------------------HHHHHHHHHHHHHCCCcCc--
Confidence 999999987653 35679999998874 544 2678999999999998763
Q ss_pred ceeecccccCCCCCCCCeeeEEEEEeEcCCC-----ccccccccccCCHHHHHHHHHccC
Q 011237 98 EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 98 ~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~-----q~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
+..+......+ +.. .....+|+|....+ +..|.....|++.+++.+.+...+
T Consensus 109 ~~~l~~~~~~~--~~~-~~~~~~f~a~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 165 (198)
T 1vhz_A 109 LTFLKKLSMAP--SYF-SSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDPD 165 (198)
T ss_dssp EEEEEEEECCT--TTC-CCEEEEEEEEEEEECCCCCCCSSCCCEEEEEGGGGGGGGGCTT
T ss_pred eEEEEEEeCCC--Ccc-CcEEEEEEEEeCCcccCCCCCCceEEEEEEEHHHHHHHHHcCC
Confidence 23333333333 222 23345666654322 256778899999999988776553
No 112
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=93.41 E-value=0.17 Score=43.94 Aligned_cols=104 Identities=19% Similarity=0.281 Sum_probs=69.0
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
+.+|.+. +.++||+|++....+ ..+|.||++.++. +|. ..+++..++.
T Consensus 33 ~~~i~~~--~~~vLL~~r~~~~~~----------~g~w~~PgG~ve~--gE~------------------~~~aa~RE~~ 80 (158)
T 3hhj_A 33 ACALLDQ--DNRVLLTQRPEGKSL----------AGLWEFPGGKVEQ--GET------------------PEASLIRELE 80 (158)
T ss_dssp EEEEBCT--TSEEEEEECCCTTSC----------CCCCBCCEEECCT--TCC------------------HHHHHHHHHH
T ss_pred EEEEEeC--CCEEEEEEeCCCCCC----------CCEEECCceeecC--CCC------------------HHHHHHHHHH
Confidence 4445543 458999998643211 4589999987763 333 2567889999
Q ss_pred HHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc--cccccccccCCHHHHH
Q 011237 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSCI 145 (490)
Q Consensus 87 ~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--~~e~~~~~W~~~~~~l 145 (490)
++.|+.+....+..+... ... .........+|++....+. ..|.....|++.+++.
T Consensus 81 EEtGl~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~ 138 (158)
T 3hhj_A 81 EELGVHVQADNLFPLTFA-SHG--YETFHLLMPLYFCSHYKGVAQGREGQNLKWIFINDLD 138 (158)
T ss_dssp HHHCCBCCGGGCEEEEEE-EEE--CSSCEEEEEEEEESCCBSCCCCTTSCEEEEEEGGGGG
T ss_pred HHhCcEeecceEEEEEEE-eec--cCCcEEEEEEEEEEECCCccCCccccceEEEcHHHHh
Confidence 999999887655333221 111 2245778888888877665 5677889999977653
No 113
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=93.32 E-value=0.082 Score=48.26 Aligned_cols=105 Identities=11% Similarity=0.204 Sum_probs=62.3
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
+.+|-|+. ..++||+|++. ...|.||++.+. .+|. ..+++..++.
T Consensus 49 ~~vv~~~~-~~~vLL~~r~~--------------~g~w~lPgG~ve--~gEs------------------~~eaa~REl~ 93 (197)
T 3fcm_A 49 SAFAVNKE-RNKFLMIHHNI--------------YNSWAWTGGHSD--NEKD------------------QLKVAIKELK 93 (197)
T ss_dssp EEEEECTT-SCEEEEEEETT--------------TTEEECEEEECT--TCCB------------------HHHHHHHHHH
T ss_pred EEEEEECC-CCEEEEEEecC--------------CCCEECCccccC--CCCC------------------HHHHHHHHHH
Confidence 44555554 34999999762 238999999887 4665 2678999999
Q ss_pred HHcCCe-ecc--CcceeecccccCCCCCCC--------CeeeEEEEEeEcCCCc-----cccccccccCCHHHHHHHHH
Q 011237 87 EQLGFG-VRD--GGEWKLWKCVEEPEFGPG--------LTIHTVYIMGKLLDGN-----QILQEGCKWMSTQSCINCLA 149 (490)
Q Consensus 87 ~~~gl~-l~~--~~~~~~~~w~~~~~~~~~--------~~~dt~f~~a~lp~~q-----~~e~~~~~W~~~~~~l~~~~ 149 (490)
++.|+. +.. .....+..+..+. ..+ ..|+..| ++..+.+. ..|.....|++++++.+.+.
T Consensus 94 EEtGl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 169 (197)
T 3fcm_A 94 EETGVKNPTPLLDKAFALDVLTVNG--HIKRGKYVSSHLHLNLTY-LIECSEDETLMLKEDENSGVMWIPFNEISKYCS 169 (197)
T ss_dssp HHHCCSSCEESCSSCSEEEEEEECC--EEETTEEECCEEEEEEEE-EEECCTTSCCCCCC----CEEEEEGGGHHHHCC
T ss_pred HHHCCCcccccCCCceEEEEeeecC--ccccCcccCCceeEEEEE-EEEeCCCcccCCCcccccceEEccHHHHHhhcC
Confidence 999997 432 1222222222222 111 1233444 44555544 46888999999999887654
No 114
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=93.30 E-value=0.076 Score=46.44 Aligned_cols=102 Identities=11% Similarity=0.018 Sum_probs=65.3
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
+.+|.+ +.++||+|++. ...|.||++.+++ +|. ..+++..++.
T Consensus 10 ~~vi~~---~~~vLL~~r~~--------------~g~w~lPgG~ve~--gEs------------------~~~aa~REl~ 52 (159)
T 3f6a_A 10 SVFIVC---KDKVLLHLHKK--------------AKKMLPLGGHIEV--NEL------------------PEEACIREAK 52 (159)
T ss_dssp EEEEEE---TTEEEEEECSS--------------SCCEECEEEECCT--TCC------------------HHHHHHHHHH
T ss_pred EEEEEE---CCEEEEEEcCC--------------CCeEECCccCccC--CCC------------------HHHHHHHHHH
Confidence 344554 35999999863 3579999998875 444 2678899999
Q ss_pred HHcCCeeccCccee-e----------cccccCC-----CCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHHHH
Q 011237 87 EQLGFGVRDGGEWK-L----------WKCVEEP-----EFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSCI 145 (490)
Q Consensus 87 ~~~gl~l~~~~~~~-~----------~~w~~~~-----~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~l 145 (490)
++.|+.+....+.. + ..|..|. .+.+....=+.+|++..++++ ..|.....|++++++.
T Consensus 53 EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~ 131 (159)
T 3f6a_A 53 EEAGLNVTLYNPIDINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILKWYSKEDLK 131 (159)
T ss_dssp HHHCCCCEECCCCCHHHHHHHHHTTCEEECCCSEEEEECSSSSSCEEEEEEEEECSCSCCCCCTTSCCCEEEECSSSST
T ss_pred HHhCCCceecccccccccccccccccccccCccccccccCCCCceEEEEEEEEEeCCCCcCCCCCcccceEEeeHHHHh
Confidence 99999887544331 1 0111110 001223344467888887776 4688889999976653
No 115
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=93.26 E-value=0.11 Score=47.14 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=63.5
Q ss_pred CCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCC
Q 011237 12 NPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGF 91 (490)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 91 (490)
+..++.++||+|++..++.. ...|.||++.++. +|. ..+++..++.++.|+
T Consensus 43 ~~~~~~~vLL~~r~~~~~~~---------~g~w~lPgG~ve~--gEs------------------~~~aa~REl~EEtGl 93 (194)
T 1nqz_A 43 TREADPRVLLTVRSSELPTH---------KGQIAFPGGSLDA--GET------------------PTQAALREAQEEVAL 93 (194)
T ss_dssp ESSSSCBBCEEEEC---------------CCCEECSEEECCT--TCC------------------HHHHHHHHHHHHHCC
T ss_pred ecCCCeEEEEEEecCCCCCC---------CCeEECCcccCCC--CCC------------------HHHHHHHHHHHHHCC
Confidence 43333389999986532211 3469999998874 333 257799999999999
Q ss_pred eeccCcc-eeecccccCCCCCCCCeeeEEEEEeEcCCC------ccccccccccCCHHHH-HH
Q 011237 92 GVRDGGE-WKLWKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSC-IN 146 (490)
Q Consensus 92 ~l~~~~~-~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~------q~~e~~~~~W~~~~~~-l~ 146 (490)
.+....+ ..+.+..+ ...+...+|++.++.. +..|.....|++.+++ ++
T Consensus 94 ~~~~~~~l~~~~~~~~------~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 150 (194)
T 1nqz_A 94 DPAAVTLLGELDDVFT------PVGFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAV 150 (194)
T ss_dssp CGGGCEEEEECCCEEE------TTTEEEEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHS
T ss_pred CccceEEEEEccCccC------CCCeEEEEEEEEecCCccccCCCccceeEEEEEEHHHhccC
Confidence 8764322 22222222 2456777888887622 2458889999998887 54
No 116
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=93.23 E-value=0.055 Score=45.11 Aligned_cols=94 Identities=14% Similarity=0.259 Sum_probs=61.1
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|++.... ...+|++|++.++. +|. ..+++..++.++.|+.+..
T Consensus 15 ~~~vLl~~r~~~~~----------~~g~w~~PgG~~e~--gE~------------------~~~aa~RE~~EE~G~~~~~ 64 (129)
T 1mut_A 15 NNEIFITRRAADAH----------MANKLEFPGGKIEM--GET------------------PEQAVVRELQEEVGITPQH 64 (129)
T ss_dssp TTEEEEEECSSCCS----------SSCCEECCCCCSSS--CSS------------------TTHHHHHHHHTTTCCSSCE
T ss_pred CCEEEEEEeCCCCC----------CCCeEECCccCcCC--CCC------------------HHHHHHHHHHHHhCCcccc
Confidence 45899999876521 24689999987764 333 1466888999999998764
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc--cccccccccCCHHHH
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSC 144 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--~~e~~~~~W~~~~~~ 144 (490)
..+.....+ . ...++....||.+...++. ..|.....|++++++
T Consensus 65 ~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el 110 (129)
T 1mut_A 65 FSLFEKLEY---E--FPDRHITLWFWLVERWEGEPWGKEGQPGEWMSLVGL 110 (129)
T ss_dssp ECCCCCCBC---C--CSSCEEECCCEEEEECSSCCCCCSSCCCEEEESSSC
T ss_pred ceEEEEEEE---e--cCCceEEEEEEEEEccCCccCCcccceeEEeCHHHc
Confidence 322111111 1 2245667778888887665 456777899997654
No 117
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=93.21 E-value=0.055 Score=52.49 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=72.4
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
..++||+|+...| + ...|.||++.+++ +|. ..+++..++.++.|+.+..
T Consensus 55 ~~~VLLv~R~~~p---------~--~g~W~lPGG~ve~--gEs------------------~~~AA~REl~EEtGl~v~~ 103 (273)
T 2fml_A 55 QLKVLLIQRKGHP---------F--RNSWALPGGFVNR--NES------------------TEDSVLRETKEETGVVISQ 103 (273)
T ss_dssp EEEEEEEEECSSS---------S--TTCEECCEEECCT--TSC------------------HHHHHHHHHHHHHCCCCCG
T ss_pred CcEEEEEEccCCC---------C--CCcEECCccCCCC--CcC------------------HHHHHHHHHHHHHCCCCCc
Confidence 4589999997643 1 2579999999875 443 2678999999999998887
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHHHH
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l~ 146 (490)
..+..+..|..+.. .+..+.-+.+|++.++.+. ..|...+.|++++++.+
T Consensus 104 ~~l~~l~~~~~~~r-~~~~~~~~~~y~a~~~~~~~~~~~E~~~~~W~~~~e~~~ 156 (273)
T 2fml_A 104 ENIEQLHSFSRPDR-DPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQ 156 (273)
T ss_dssp GGEEEEEEECCTTS-STTSSEEEEEEEEECCCCCCCCCTTEEEEEEEEEEEETT
T ss_pred CcEEEEEEEcCCCC-CCCceEEEEEEEEEeCCCCCCCCcceeeEEEEEhhHhhh
Confidence 66666666665541 2233677888999888764 46888899999876544
No 118
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=93.07 E-value=0.15 Score=46.08 Aligned_cols=115 Identities=10% Similarity=0.109 Sum_probs=71.0
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCC-CccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDL-PAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
+.+|-|. +.++||.|++.... .....|++ |++.++. +|. ..+++..++
T Consensus 36 ~~~i~~~--~g~vLl~~R~~~~~---------~~~g~w~~~PgG~ve~--gEt------------------~~~aa~REl 84 (190)
T 1hzt_A 36 SSWLFNA--KGQLLVTRRALSKK---------AWPGVWTNSVCGHPQL--GES------------------NEDAVIRRC 84 (190)
T ss_dssp EEEEECT--TCCEEEEEECTTCS---------SSTTCEEESEEECCCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEcC--CCEEEEEEeCCCCC---------CCCCcccCcccccCCC--CCC------------------HHHHHHHHH
Confidence 4455553 34899988764322 12357999 8888764 433 257799999
Q ss_pred HHHcCCeeccC-cceeecccccCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHHHHHHHccC
Q 011237 86 LEQLGFGVRDG-GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 86 l~~~gl~l~~~-~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
.++.|+.+..- ....-..+..+..-+...+.-+.+|++..+... ..|.....|++++++.+.+...+
T Consensus 85 ~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~ 155 (190)
T 1hzt_A 85 RYELGVEITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGIDATP 155 (190)
T ss_dssp HHHHCCCBSCCEEEETTCEEEEECTTSCEEEEECCEEEEEBCSCCCCCTTTEEEEEEECHHHHHHHHHHCG
T ss_pred HHHHCCCchhhheeeeeEEEEeeCCCCCcceEEEEEEEEecCCCCcCCccceeeEEEecHHHHHHHHHcCh
Confidence 99999988753 111111121111002122445567788765332 45778999999999999887654
No 119
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=92.88 E-value=0.19 Score=45.96 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=62.7
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+||...| ..|.||++.+++ +|. ..+++..++.++.|+.+..
T Consensus 53 ~~~vLLv~r~~~~-------------g~W~lPgG~ve~--gEt------------------~~eaa~REl~EEtGl~~~~ 99 (194)
T 2fvv_A 53 EEEVLLVSSSRHP-------------DRWIVPGGGMEP--EEE------------------PSVAAVREVCEEAGVKGTL 99 (194)
T ss_dssp CCEEEEEECSSCT-------------TSEECSEEECCT--TCC------------------HHHHHHHHHHHHHCEEEEE
T ss_pred CCEEEEEEEeCCC-------------CcEECCCCcCCC--CcC------------------HHHHHHHHHHHHhCCcccc
Confidence 4599999987532 479999988874 444 2678999999999998764
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc----c--ccccccccCCHHHHHHHHHcc
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN----Q--ILQEGCKWMSTQSCINCLAEV 151 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q----~--~e~~~~~W~~~~~~l~~~~~~ 151 (490)
..+ +..+-.+. +...+.+|++.++... . .+.....|++++++.+.+...
T Consensus 100 ~~~--l~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~~~e~~~~~~W~~~~el~~~l~~~ 154 (194)
T 2fvv_A 100 GRL--VGIFENQE-----RKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQYH 154 (194)
T ss_dssp EEE--EEEEEETT-----TTEEEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHTTT
T ss_pred ceE--EEEEEcCC-----CceEEEEEEEEEccccCCCCCcccccceEEEEEHHHHHHHHhcC
Confidence 322 22222221 2334566666654321 1 133578999999998877543
No 120
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=92.79 E-value=0.1 Score=52.68 Aligned_cols=100 Identities=24% Similarity=0.287 Sum_probs=65.9
Q ss_pred CCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeec
Q 011237 15 NDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR 94 (490)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~ 94 (490)
++.++||+|++. .+.|.||++.+++ +|. ..+++..++.++.|+.+.
T Consensus 36 ~~~~vLLv~r~~--------------~g~W~lPgG~ve~--gEs------------------~~~AA~REl~EEtGl~~~ 81 (364)
T 3fjy_A 36 DSIEVCIVHRPK--------------YDDWSWPKGKLEQ--NET------------------HRHAAVREIGEETGSPVK 81 (364)
T ss_dssp TTEEEEEEEETT--------------TTEEECCEEECCT--TCC------------------HHHHHHHHHHHHHSCCEE
T ss_pred CceEEEEEEcCC--------------CCCEECCcCCCCC--CCC------------------HHHHHHHHHHHHhCCeee
Confidence 355999999832 1679999988874 554 267899999999999887
Q ss_pred cCcceeecccccCCCCCC---------CCeeeEEEEEeEcCCCc----------------cccccccccCCHHHHHHHHH
Q 011237 95 DGGEWKLWKCVEEPEFGP---------GLTIHTVYIMGKLLDGN----------------QILQEGCKWMSTQSCINCLA 149 (490)
Q Consensus 95 ~~~~~~~~~w~~~~~~~~---------~~~~dt~f~~a~lp~~q----------------~~e~~~~~W~~~~~~l~~~~ 149 (490)
...+.....+..+.+ +. .......||++....+. ..|.....|++++++.+.+.
T Consensus 82 ~~~~l~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 160 (364)
T 3fjy_A 82 LGPYLCEVEYPLSEE-GKKTRHSHDCTADTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILS 160 (364)
T ss_dssp EEEEEEEEC----------------------CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCS
T ss_pred eccccceEEEeccCC-CcccccccccccCceEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhc
Confidence 554433333332220 11 12577889998877652 36888999999999987643
No 121
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=92.58 E-value=0.15 Score=45.91 Aligned_cols=104 Identities=10% Similarity=0.031 Sum_probs=67.8
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|+++.++.+... .....|.||++.++. +|. ..+++..++.++.|+....
T Consensus 45 ~~~vLL~~r~~~~~~g~~~----~~~g~w~lPGG~ve~--gEs------------------~~~aa~REl~EEtGl~~~~ 100 (187)
T 3i9x_A 45 TLHILLIKRSLTNAEGKPN----MEGGKWAVPGGFVDE--NES------------------AEQAAERELEEETSLTDIP 100 (187)
T ss_dssp EEEEEEEECCSBCTTSSBC----TTTTCEECSEEECCT--TSC------------------HHHHHHHHHHHHHCCCSCC
T ss_pred CCEEEEEEEccccccccCC----CCCCEEECCceeCCC--CCC------------------HHHHHHHHHHHHHCCCCcc
Confidence 4589999998766554321 246789999998875 555 2678899999999997653
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc------cccccccccCCHHHHHH
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN------QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q------~~e~~~~~W~~~~~~l~ 146 (490)
.. .+.-+-.+.. .+..++-+.+|.+.+..+. ..|.....|++++++.+
T Consensus 101 ~~--~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 154 (187)
T 3i9x_A 101 LI--PFGVFDKPGR-DPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALE 154 (187)
T ss_dssp CE--EEEEECCTTS-STTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTT
T ss_pred eE--EEEEEcCCcc-CCCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHccc
Confidence 32 3333322221 2233455566666555432 45788899999888753
No 122
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=92.57 E-value=0.17 Score=46.57 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=64.2
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+||.++|. ....|.||++.++. .+|. ..+++..++.++.|+.+..
T Consensus 54 ~~~vLLvrr~r~~~----------~~~~w~lPgG~ve~-~gEs------------------~~~aa~REl~EEtGl~~~~ 104 (207)
T 1mk1_A 54 NGNIPMVYQYRHTY----------GRRLWELPAGLLDV-AGEP------------------PHLTAARELREEVGLQAST 104 (207)
T ss_dssp TSEEEEEEEEETTT----------TEEEEECCEEECCS-TTCC------------------HHHHHHHHHHHHHCEEEEE
T ss_pred CCEEEEEEeecCCC----------CCcEEEeCCccccC-CCCC------------------HHHHHHHHHHHHHCCcccc
Confidence 45999999987763 25689999988762 2333 2567999999999998764
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCC-------ccccccccccCCHHHHHHHHHccC
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-------NQILQEGCKWMSTQSCINCLAEVK 152 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~-------q~~e~~~~~W~~~~~~l~~~~~~~ 152 (490)
. ..+....+.+ +.. .....+|++....+ +..|.....|++.+++.+.+...+
T Consensus 105 ~--~~l~~~~~~~--~~~-~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~ 163 (207)
T 1mk1_A 105 W--QVLVDLDTAP--GFS-DESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRGE 163 (207)
T ss_dssp E--EEEEEECSCT--TTB-CCCEEEEEEEEEEECCC----------CEEEEEHHHHHHHHHTTS
T ss_pred c--EEEEEEEcCC--Ccc-ccEEEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHHHHcCC
Confidence 2 2222222222 111 11345566554322 145778899999999999887664
No 123
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=92.48 E-value=0.32 Score=42.13 Aligned_cols=106 Identities=15% Similarity=0.295 Sum_probs=62.4
Q ss_pred ehhhcCC-CCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 7 ALILKNP-LNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 7 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
++||.+. ..+.++||+|++... .-..+|.||++.++. +|. ...+++..++
T Consensus 23 ~~vi~~~~~~~~~vLl~~R~~~~----------~~~g~w~~PgG~~e~--gE~-----------------~~~~a~~REl 73 (155)
T 1x51_A 23 TCVLEQPGALGAQILLVQRPNSG----------LLAGLWEFPSVTWEP--SEQ-----------------LQRKALLQEL 73 (155)
T ss_dssp EEEEEEECSSSEEEEEEECCCCS----------TTCSCEECCEEECCS--SHH-----------------HHHHHHHHHH
T ss_pred EEEEEecCCCCCEEEEEECCCCC----------CCCceecCCccccCC--CCC-----------------HHHHHHHHHH
Confidence 3445443 224589999865321 123689999987653 222 1135677888
Q ss_pred HHHcC-CeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc--cccccccccCCHHHHHH
Q 011237 86 LEQLG-FGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 86 l~~~g-l~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--~~e~~~~~W~~~~~~l~ 146 (490)
.++.| +.... +..+.. +.-. ...++....+|.+.+..+. ..|.....|++++++.+
T Consensus 74 ~EE~g~l~~~~--~~~l~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 132 (155)
T 1x51_A 74 QRWAGPLPATH--LRHLGE-VVHT--FSHIKLTYQVYGLALEGQTPVTTVPPGARWLTQEEFHT 132 (155)
T ss_dssp HHHSCCCCSTT--CEECCC-BCCB--CSSCEEEEEEEEEECSSCCCCCCCCTTEEEEEHHHHHH
T ss_pred HHHhCCcceee--eeecce-EEEe--cCCccEEEEEEEEEEcCCCCCCCCCCccEEccHHHhhh
Confidence 89999 65432 222211 1111 1234667778888887654 34667789999887654
No 124
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=92.34 E-value=0.12 Score=44.82 Aligned_cols=99 Identities=18% Similarity=0.268 Sum_probs=65.3
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.+.+|.|. +.++||+|+..+| ....|.||++.++. +|. ..+++..++
T Consensus 23 v~~~i~~~--~~~vLl~~r~~~~-----------~~~~w~~PgG~ve~--gE~------------------~~~aa~REl 69 (156)
T 3gg6_A 23 VLAVFLSE--QDEVLLIQEAKRE-----------CRGSWYLPAGRMEP--GET------------------IVEALQREV 69 (156)
T ss_dssp EEEECBCT--TSEEEEEECCCTT-----------STTCEECSEEECCT--TCC------------------HHHHHHHHH
T ss_pred EEEEEEeC--CCEEEEEEecCCC-----------CCCEEECCeeeccC--CCC------------------HHHHHHHHH
Confidence 45556554 3589999998544 35689999998764 333 256789999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc-------cccccccccCCHHHHH
Q 011237 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-------QILQEGCKWMSTQSCI 145 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-------~~e~~~~~W~~~~~~l 145 (490)
.++.|+.+....+... + . . ...+-+.+|++....+. ..|.....|++.+++.
T Consensus 70 ~EEtGl~~~~~~~~~~--~-~-~----~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~ 128 (156)
T 3gg6_A 70 KEEAGLHCEPETLLSV--E-E-R----GPSWVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLP 128 (156)
T ss_dssp HHHHCEEEEEEEEEEE--E-E-S----STTEEEEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCC
T ss_pred HHhhCceeEeeeEEEE--E-c-C----CCCEEEEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCc
Confidence 9999998875433322 1 1 1 12345567777765554 2577788999977653
No 125
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=92.15 E-value=0.083 Score=48.72 Aligned_cols=95 Identities=17% Similarity=0.313 Sum_probs=63.8
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|++ +...|.||++.+++ +|. ..+++..++.++.|+.+..
T Consensus 78 ~~~vLLv~r~--------------~~g~w~lPgG~ve~--gEs------------------~~~aa~REl~EEtGl~v~~ 123 (205)
T 3q1p_A 78 NEKLLFVKEK--------------SDGKWALPGGWADV--GYT------------------PTEVAAKEVFEETGYEVDH 123 (205)
T ss_dssp TTEEEEEEC-----------------CCEECSEEECCT--TCC------------------HHHHHHHHHHHHHSEEEEE
T ss_pred CCEEEEEEEc--------------CCCcEECCcCccCC--CCC------------------HHHHHHHHHHHHHCCcccc
Confidence 4599999975 14589999998875 444 2678999999999999875
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHH
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSC 144 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~ 144 (490)
..+.....+.....-+....+-..||++.+..++ +.|.....|++.++.
T Consensus 124 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el 175 (205)
T 3q1p_A 124 FKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGEKKTSIETEEVEFFGENEL 175 (205)
T ss_dssp EEEEEEEEHHHHSCCCCSSCEEEEEEEEEEEEECCCCCTTSCCEEEECTTSC
T ss_pred ceEEEEEeccccCCCCCCceEEEEEEEEEecCCccCCCCcceEEEEEeHHHh
Confidence 5444333332211002234556678888876665 468888999997664
No 126
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=91.54 E-value=0.21 Score=47.38 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=69.0
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|+...|. ...|.||++.+++..+|. + .+++..++.++-|+.+..
T Consensus 36 ~~~vLLv~R~~~~~-----------~g~W~lPGG~ve~~~gEs-----------------~-~~AA~REl~EEtGl~~~~ 86 (240)
T 3gz5_A 36 QLKVLLVQRSNHPF-----------LGLWGLPGGFIDETCDES-----------------L-EQTVLRKLAEKTAVVPPY 86 (240)
T ss_dssp EEEEEEEECCSSSS-----------TTCEECSEEECCTTTCSB-----------------H-HHHHHHHHHHHHSSCCSE
T ss_pred CcEEEEEECcCCCC-----------CCCEECCccccCCCCCcC-----------------H-HHHHHHHHHHHHCCCCCc
Confidence 45899999875331 457999999998755666 2 678899999999997752
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHHH
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSC 144 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~ 144 (490)
+..+..+..+.. .+..++-+.+|.|.++.+. ..|...+.|++.+++
T Consensus 87 --~~~l~~~~~~~r-~~~~~~~~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el 136 (240)
T 3gz5_A 87 --IEQLCTVGNNSR-DARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADV 136 (240)
T ss_dssp --EEEEEEEEESSS-STTSCEEEEEEEEECCHHHHHHHHTTCTTEEEEEHHHH
T ss_pred --eeeEEEeCCCcc-CCCceEEEEEEEEEecccccCCCCCcccceEEecHHHc
Confidence 223333333321 3345788888999988776 458889999998876
No 127
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=91.24 E-value=0.15 Score=45.09 Aligned_cols=106 Identities=13% Similarity=0.278 Sum_probs=67.0
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHH
Q 011237 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (490)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (490)
.+|-|. +.++||+|+.. ...|.+|++.++. +|. ..+++..++.+
T Consensus 13 ~~i~~~--~~~vLl~~r~~--------------~~~w~~p~G~~e~--gE~------------------~~~aa~RE~~E 56 (164)
T 2kdv_A 13 IVICNR--QGQVMWARRFG--------------QHSWQFPQGGINP--GES------------------AEQAMYRELFE 56 (164)
T ss_dssp EEEECT--TSEEEEEEETT--------------CCCEECCEEECCT--TCC------------------HHHHHHHHHHH
T ss_pred EEEEcc--CCEEEEEEEcC--------------CCeEECCeeecCC--CCC------------------HHHHHHHHHHH
Confidence 455554 34899999863 3679999987764 443 26789999999
Q ss_pred HcCCeeccC-cceeecccc---cCCCC----CCC--CeeeEEEEEeEcCCCc---------cccccccccCCHHHHHHHH
Q 011237 88 QLGFGVRDG-GEWKLWKCV---EEPEF----GPG--LTIHTVYIMGKLLDGN---------QILQEGCKWMSTQSCINCL 148 (490)
Q Consensus 88 ~~gl~l~~~-~~~~~~~w~---~~~~~----~~~--~~~dt~f~~a~lp~~q---------~~e~~~~~W~~~~~~l~~~ 148 (490)
+.|+..... .+..+-+|+ .|... ..+ ......||++.+..+. ..|.....|+++.++++.+
T Consensus 57 E~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~~l 136 (164)
T 2kdv_A 57 EVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQV 136 (164)
T ss_dssp HHCCCGGGEEEEEECSSCEEEECCTTTCCTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGGS
T ss_pred HHCCCccceEEEEEecceeEEecCcceeeeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhhhh
Confidence 999987632 333344443 22200 011 1224578888876553 2377889999988877643
Q ss_pred H
Q 011237 149 A 149 (490)
Q Consensus 149 ~ 149 (490)
.
T Consensus 137 ~ 137 (164)
T 2kdv_A 137 V 137 (164)
T ss_dssp C
T ss_pred h
Confidence 3
No 128
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=91.17 E-value=0.25 Score=43.24 Aligned_cols=100 Identities=17% Similarity=0.097 Sum_probs=60.4
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|.+.... .....|.||++.++. +|. ..+++..++.++.|+.+..
T Consensus 38 ~~~vLL~~r~~~~~---------~~~g~w~lPgG~ve~--gE~------------------~~~aa~REl~EEtGl~~~~ 88 (165)
T 3oga_A 38 DGCYLLCKMADNRG---------VFPGQWALSGGGVEP--GER------------------IEEALRREIREELGEQLIL 88 (165)
T ss_dssp TTEEEEEEECC---------------CCEECCCEECCT--TCC------------------HHHHHHHHHHHHHCSSCCE
T ss_pred CCEEEEEEecCCCC---------CCCCeEECCccccCC--CCC------------------HHHHHHHHHHHHhCCCccc
Confidence 45899998764332 234689999987653 333 2567899999999999876
Q ss_pred Ccceeec------ccccCCCCCCCCeee--EEEEEeEcCCCc---cccccccccCCHHHHHH
Q 011237 96 GGEWKLW------KCVEEPEFGPGLTIH--TVYIMGKLLDGN---QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 96 ~~~~~~~------~w~~~~~~~~~~~~d--t~f~~a~lp~~q---~~e~~~~~W~~~~~~l~ 146 (490)
..+..+. .+..+. +....+. ..+|.+....++ ..|.....|++++++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 148 (165)
T 3oga_A 89 SDITPWTFRDDIRIKTYAD--GRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVKPEELAL 148 (165)
T ss_dssp EEEEEEEEEEEEEEEEC----CCEEEEEEEEEEEEEEESCCCCCCCTTEEEEEEECGGGGGG
T ss_pred cceeeeeeecceeeEecCC--CCceeEEEEEEEEEeeccCCCccCCchheeeEEccHHHHhh
Confidence 6655432 122222 2111122 345556666655 35778899999887644
No 129
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=91.01 E-value=0.11 Score=47.88 Aligned_cols=94 Identities=17% Similarity=0.307 Sum_probs=62.9
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|++ ...|.||++.++. +|. ..+++..++.++.|+.+..
T Consensus 80 ~~~vLLvrr~---------------~g~w~lPgG~ve~--gEs------------------~~~aa~REl~EEtGl~~~~ 124 (206)
T 3o8s_A 80 EDKILLVQEN---------------DGLWSLPGGWCDV--DQS------------------VKDNVVKEVKEEAGLDVEA 124 (206)
T ss_dssp TTEEEEEECT---------------TSCEECSEEECCT--TSC------------------HHHHHHHHHHHHHCEEEEE
T ss_pred CCEEEEEEec---------------CCeEECCeeccCC--CCC------------------HHHHHHHHHHHHHCCccee
Confidence 3599999976 4689999988763 333 2677899999999998875
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHH
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSC 144 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~ 144 (490)
..+.....+.....-+....+-..||.+.+..++ +.|.....|++.+++
T Consensus 125 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el 176 (206)
T 3o8s_A 125 QRVVAILDKHKNNPAKSAHRVTKVFILCRLLGGEFQPNSETVASGFFSLDDL 176 (206)
T ss_dssp EEEEEEEEHHHHCC-----CEEEEEEEEEEEEECCCCCSSCSEEEEECTTSC
T ss_pred eeEEEEEeccccCCCCCCceEEEEEEEEEecCCeecCCCCceEEEEEeHHHh
Confidence 5444333332222002235666778888887666 368888999997664
No 130
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=90.71 E-value=0.2 Score=43.57 Aligned_cols=96 Identities=21% Similarity=0.250 Sum_probs=59.7
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
+.+|-+ +.++||+|++. ...|.||++.+++ +|. ..+++..++.
T Consensus 5 ~~vi~~---~~~vLL~~r~~--------------~g~W~lPgG~ve~--gEs------------------~~~aa~REl~ 47 (156)
T 1k2e_A 5 SGVLVE---NGKVLLVKHKR--------------LGVYIYPGGHVEH--NET------------------PIEAVKREFE 47 (156)
T ss_dssp EEECEE---TTEEEEEECTT--------------TCSEECSEEECCT--TCC------------------HHHHHHHHHH
T ss_pred EEEEEE---CCEEEEEEEcC--------------CCcEECCeeecCC--CCC------------------HHHHHHHHHH
Confidence 344544 45899999753 3579999998875 443 2567899999
Q ss_pred HHcCCeeccCccee-eccc---------------ccCCCCCCCCeee-EEEEEeEcCCCccccccccccCCHHHHH
Q 011237 87 EQLGFGVRDGGEWK-LWKC---------------VEEPEFGPGLTIH-TVYIMGKLLDGNQILQEGCKWMSTQSCI 145 (490)
Q Consensus 87 ~~~gl~l~~~~~~~-~~~w---------------~~~~~~~~~~~~d-t~f~~a~lp~~q~~e~~~~~W~~~~~~l 145 (490)
++.|+.+....+.. +..| ++-+ + ...+. +.+|++..++ .|.....|++++++.
T Consensus 48 EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~f~~~~~~---~e~~~~~W~~~~el~ 117 (156)
T 1k2e_A 48 EETGIVVEPIGFTYGIIDENAVERPMPLVILEEVVKYP--E-ETHIHFDLIYLVKRVG---GDLKNGEWIDVREID 117 (156)
T ss_dssp HHHSEEEEECCCCCCCBSSSEEECCCCSEEEEEEEECS--S-CEEEEEEEEEEEEEEE---ECCCSCEEEEGGGGG
T ss_pred HHHCCcceeccceeeecccccccccccceeeeeeecCC--C-CceEEEEEEEEEEecC---CcEeeeEEeCHHHHh
Confidence 99999988654421 1111 1111 1 11211 2346666543 467789999988764
No 131
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=90.45 E-value=0.34 Score=47.85 Aligned_cols=100 Identities=17% Similarity=0.076 Sum_probs=64.3
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|++..|. ...|.||++.+++ +|. ..+++..++.++.|+.+..
T Consensus 213 ~~~vLL~~r~~~~~-----------~g~w~lPgG~ve~--gE~------------------~~~aa~REl~EEtGl~~~~ 261 (341)
T 2qjo_A 213 AGHVLMVRRQAKPG-----------LGLIALPGGFIKQ--NET------------------LVEGMLRELKEETRLKVPL 261 (341)
T ss_dssp TTEEEEEECCSSSS-----------TTCEECSEEECCT--TSC------------------HHHHHHHHHHHHHCCSSCH
T ss_pred CCEEEEEEecCCCC-----------CCeEECCCCcCCC--CCC------------------HHHHHHHHHhhhhCCcccc
Confidence 45999999965431 4679999998875 443 2577999999999998775
Q ss_pred Ccce----eecccccCCCCCCCCeeeEEEEEeEcCCCc------cccccccccCCHHHHHHH
Q 011237 96 GGEW----KLWKCVEEPEFGPGLTIHTVYIMGKLLDGN------QILQEGCKWMSTQSCINC 147 (490)
Q Consensus 96 ~~~~----~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q------~~e~~~~~W~~~~~~l~~ 147 (490)
..+. ....|-.|. ..+..+.-+.+|++.++.++ ..|.....|++.+++.+.
T Consensus 262 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 322 (341)
T 2qjo_A 262 PVLRGSIVDSHVFDAPG-RSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQ 322 (341)
T ss_dssp HHHHHTEEEEEEECCTT-SCTTSCEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHHT
T ss_pred ccccccccceEEEeCCC-CCCCCcEEEEEEEEEecCCCcCccCCCCceeeEEEeeHHHHhhh
Confidence 4321 122333333 12222456778888887655 367889999999987763
No 132
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=90.33 E-value=0.41 Score=47.57 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=66.9
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|+...| ....|.||++.+++ +|. ..+++..++.++.|+.+..
T Consensus 218 ~~~vLL~~r~~~~-----------~~g~w~lPgG~ve~--gEt------------------~~~aa~REl~EEtGl~v~~ 266 (352)
T 2qjt_B 218 NDHILMVQRKAHP-----------GKDLWALPGGFLEC--DET------------------IAQAIIRELFEETNINLTH 266 (352)
T ss_dssp TTEEEEEEESSSS-----------STTCEECSEEECCT--TSC------------------HHHHHHHHHHHHHCCSCCH
T ss_pred CCEEEEEEEcCCC-----------CCCeEECCCCcCCC--CCC------------------HHHHHHHHHHHhhCCCccc
Confidence 4599999997643 14689999998875 444 2577999999999998775
Q ss_pred Ccc----eeecccccCCCCCCCCeeeEEEEEeEcCCCc-------cccccccccCCH-HHHHH
Q 011237 96 GGE----WKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-------QILQEGCKWMST-QSCIN 146 (490)
Q Consensus 96 ~~~----~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q-------~~e~~~~~W~~~-~~~l~ 146 (490)
..+ .....|..|. .....+.-+..|++.++.++ ..|.....|++. +++.+
T Consensus 267 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~ 328 (352)
T 2qjt_B 267 EQLAIAKRCEKVFDYPD-RSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKN 328 (352)
T ss_dssp HHHHHHEEEEEEECCTT-SCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHH
T ss_pred chhcceeeeeEEecCCC-CCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHh
Confidence 332 1223333333 12223556677777776554 358889999999 87765
No 133
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=89.39 E-value=0.32 Score=45.58 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=65.0
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|+...|. ...|.||++.+++ +|. + .+++..++.++-|+....
T Consensus 27 ~~~vLLv~r~~~~~-----------~g~w~lPGG~ve~--gEs-----------------~-~~Aa~REl~EEtGl~~~~ 75 (226)
T 2fb1_A 27 EISLLLLKRNFEPA-----------MGEWSLMGGFVQK--DES-----------------V-DDAAKRVLAELTGLENVY 75 (226)
T ss_dssp EEEEEEEECSSSSS-----------TTCEECEEEECCT--TSC-----------------H-HHHHHHHHHHHHCCCSCE
T ss_pred CCEEEEEECcCCCC-----------CCCEECCeeccCC--CCC-----------------H-HHHHHHHHHHHHCCCCCc
Confidence 45899999976431 3569999999984 444 2 577999999999998763
Q ss_pred -CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHHH
Q 011237 96 -GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSC 144 (490)
Q Consensus 96 -~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~ 144 (490)
..+..+. .+.. .+..++-+.+|.|.++.+. ..|...+.|++.+++
T Consensus 76 ~~~l~~~~---~~~r-~~~~~~v~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el 125 (226)
T 2fb1_A 76 MEQVGAFG---AIDR-DPGERVVSIAYYALININEYDRELVQKHNAYWVNINEL 125 (226)
T ss_dssp EEEEEEEC---CTTS-SSSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSC
T ss_pred eEEEEEeC---CCCc-CCCceEEEEEEEEEecCcccccCCccccceEEEEHHHh
Confidence 3333332 2221 2334667778888888765 367888999997764
No 134
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=87.11 E-value=1.9 Score=38.02 Aligned_cols=107 Identities=11% Similarity=0.059 Sum_probs=66.1
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCC-CccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDL-PAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
+.+|.|+. .++||.|.++... .-...|+| |++.++. +|. ..+++..++
T Consensus 41 ~v~i~~~~--~~vLl~~R~~~~~---------~~~g~w~l~pGG~ve~--gE~------------------~~~aa~REl 89 (180)
T 2fkb_A 41 YIVVHDGM--GKILVQRRTETKD---------FLPGMLDATAGGVVQA--DEQ------------------LLESARREA 89 (180)
T ss_dssp EEEEECSS--SCEEEEEECSSCS---------SSTTCEESSBCCBCBT--TCC------------------HHHHHHHHH
T ss_pred EEEEECCC--CEEEEEECCCCCc---------cCCCcEEeecCCCCCC--CCC------------------HHHHHHHHH
Confidence 34555543 3788877654321 11357999 8988763 333 256789999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCCHHHHHHHHH
Q 011237 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCINCLA 149 (490)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~~~~~l~~~~ 149 (490)
.++.|+.... +..+..+.... + .......+|++...... ..|.....|++++++.+.+.
T Consensus 90 ~EEtGl~~~~--~~~l~~~~~~~--~-~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 151 (180)
T 2fkb_A 90 EEELGIAGVP--FAEHGQFYFED--K-NCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCD 151 (180)
T ss_dssp HHHHCCBSCC--CEEEEEEEEEE--T-TEEEEEEEEEEECCCCCCCCTTTEEEEEEECHHHHHTTGG
T ss_pred HHHHCCCccc--eEEEEEEEecC--C-CceEEEEEEEEecCCCcCCChhHhheEEEecHHHHHHHHH
Confidence 9999997643 22233322222 1 24566777777743222 46778899999998877654
No 135
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=86.11 E-value=0.48 Score=45.77 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=62.4
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.++||+|++..| ...|.||++.++. +|. ..+++..++.++.|+.+..
T Consensus 150 ~~~vLL~rr~~~~------------~g~w~lPgG~vE~--GEt------------------~eeAa~REv~EEtGl~v~~ 197 (269)
T 1vk6_A 150 DDSILLAQHTRHR------------NGVHTVLAGFVEV--GET------------------LEQAVAREVMEESGIKVKN 197 (269)
T ss_dssp TTEEEEEEETTTC------------SSCCBCEEEECCT--TCC------------------HHHHHHHHHHHHHCCEEEE
T ss_pred CCEEEEEEecCCC------------CCcEECCcCcCCC--CCC------------------HHHHHHHHHHHHhCceeee
Confidence 4599999998654 2469999998874 444 2567999999999998874
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc----cccccccccCCHHHH
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSC 144 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q----~~e~~~~~W~~~~~~ 144 (490)
..+..-..|.- + ..-+.+|++.+..++ ..|...+.|++.+++
T Consensus 198 ~~~~~~~~~~~------~-~~~~~~f~a~~~~~~~~~~~~E~~~~~W~~~~el 243 (269)
T 1vk6_A 198 LRYVTSQPWPF------P-QSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDL 243 (269)
T ss_dssp EEEEEEEEEET------T-EEEEEEEEEEEEECCCCCCTTTEEEEEEEETTSC
T ss_pred EEEEEEEecCC------C-CEEEEEEEEEECCCCcCCCCcceEEEEEEEHHHh
Confidence 33222222321 2 235667788776665 468889999997764
No 136
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=83.14 E-value=1.1 Score=34.57 Aligned_cols=38 Identities=24% Similarity=0.136 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc
Q 011237 424 GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 470 (490)
Q Consensus 424 g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 470 (490)
++.|+.||++.+- + ...++..||..|+++|.|.+....
T Consensus 23 ~~psv~EIa~~lg--v-------S~~TVrr~L~~Le~kG~I~R~~gg 60 (77)
T 2jt1_A 23 APVKTRDIADAAG--L-------SIYQVRLYLEQLHDVGVLEKVNAG 60 (77)
T ss_dssp SCEEHHHHHHHHT--C-------CHHHHHHHHHHHHHTTSEEEESCS
T ss_pred CCcCHHHHHHHHC--C-------CHHHHHHHHHHHHHCCcEEecCCC
Confidence 4669999999873 2 235699999999999999887543
No 137
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=82.54 E-value=0.79 Score=42.60 Aligned_cols=112 Identities=10% Similarity=0.049 Sum_probs=67.3
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCC-CccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeec
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDL-PAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR 94 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~ 94 (490)
+.++||+|.+.+|. +. ++ ...|.+ |++.+++-+. . .| .+ --.+++..++.++.|+.+.
T Consensus 78 ~grvLl~~R~~~~~--e~----~~-~g~w~~gPGGhVE~GEs-~-~p---~E---------tleeAa~REl~EEtGl~v~ 136 (211)
T 3e57_A 78 GDRVLITKRTTKQS--EK----RL-HNLYSLGIGGHVREGDG-A-TP---RE---------AFLKGLEREVNEEVDVSLR 136 (211)
T ss_dssp TTEEEEEEC-------------------CBSSEECCCBGGGC-S-SH---HH---------HHHHHHHHHHHHHEEEEEE
T ss_pred CCEEEEEEECCCCC--cc----cc-cCCcccccceEEeCCCC-C-Cc---hh---------hHHHHHHHHHHHHhCCeee
Confidence 55999998776552 11 11 246888 9999887654 1 11 00 1167899999999999887
Q ss_pred cCcceeecccccCCCCCCCCeeeEEEEEeEcCCCc--cccccccccCCHHHHHHHHHcc
Q 011237 95 DGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSCINCLAEV 151 (490)
Q Consensus 95 ~~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--~~e~~~~~W~~~~~~l~~~~~~ 151 (490)
...+.-..+|...+ . .+.+=..+|.+...+++ .+|.....|+++++..+.....
T Consensus 137 ~~~~ig~~~~~~~~--~-~~~~l~~~f~~~~~~g~~~~~E~~~~~W~~~~eL~~~~~~l 192 (211)
T 3e57_A 137 ELEFLGLINSSTTE--V-SRVHLGALFLGRGKFFSVKEKDLFEWELIKLEELEKFSGVM 192 (211)
T ss_dssp EEEEEEEEECCSSH--H-HHTEEEEEEEEEEEEEEESCTTTCEEEEEEHHHHHHHGGGC
T ss_pred ccEEEEEEeccCCC--C-CeEEEEEEEEEEeCCceeCCCCeEEEEEEEHHHHHHhHhhc
Confidence 65555555553322 1 22333346777776665 5677889999999987765443
No 138
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=82.15 E-value=0.85 Score=39.14 Aligned_cols=79 Identities=14% Similarity=0.226 Sum_probs=57.5
Q ss_pred CCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeeccCcceeecccccCCCCCCCCeeeEEEEEe
Q 011237 44 WDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMG 123 (490)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~f~~a 123 (490)
|.||++.+++ +|. ..+++..++.++.|+.+....+....++..+. ..++.+.+|.+
T Consensus 38 w~lPgG~ve~--gE~------------------~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 93 (155)
T 2b06_A 38 YAFPGGHVEN--DEA------------------FAESVIREIYEETGLTIQNPQLVGIKNWPLDT----GGRYIVICYKA 93 (155)
T ss_dssp EECCCCBCCT--TSC------------------HHHHHHHHHHHHHSEEEESCEEEEEEEEECTT----SCEEEEEEEEE
T ss_pred EeccceecCC--CCC------------------HHHHHHHHHHHHhCccccCCcEEEEEeeccCC----CceEEEEEEEE
Confidence 8999998874 443 25678999999999998866655555555432 35778888888
Q ss_pred EcCCCc--cccccccccCCHHHHHH
Q 011237 124 KLLDGN--QILQEGCKWMSTQSCIN 146 (490)
Q Consensus 124 ~lp~~q--~~e~~~~~W~~~~~~l~ 146 (490)
..+.+. ..|.....|++++++.+
T Consensus 94 ~~~~~~~~~~e~~~~~W~~~~el~~ 118 (155)
T 2b06_A 94 TEFSGTLQSSEEGEVSWVQKDQIPN 118 (155)
T ss_dssp CEEEECCCCBTTBEEEEEEGGGGGG
T ss_pred EecCCCCCCCcceeeEEeeHHHhhh
Confidence 776554 46788899999877543
No 139
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=81.51 E-value=1.4 Score=44.44 Aligned_cols=99 Identities=16% Similarity=0.244 Sum_probs=64.4
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHH
Q 011237 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (490)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (490)
.+++|.|. +.++||+|.+.... -..+|.||++..+.- . ..++...++
T Consensus 243 ~~~vi~~~--~g~vLL~rR~~~g~----------~~GlWefPGG~ve~g---t------------------~~~al~REl 289 (369)
T 3fsp_A 243 AVAVLADD--EGRVLIRKRDSTGL----------LANLWEFPSCETDGA---D------------------GKEKLEQMV 289 (369)
T ss_dssp EEEEEECS--SSEEEEEECCSSST----------TTTCEECCEEECSSS---C------------------THHHHHHHH
T ss_pred EEEEEEeC--CCEEEEEECCCCCC----------cCCcccCCCcccCCC---C------------------cHHHHHHHH
Confidence 45666653 45899988764211 247899999865421 1 134456678
Q ss_pred HHHcCCeeccCc-ceeecccccCCCCCCCCeeeEEEEEeEcCCCccccccccccCCHHHH
Q 011237 86 LEQLGFGVRDGG-EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGNQILQEGCKWMSTQSC 144 (490)
Q Consensus 86 l~~~gl~l~~~~-~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q~~e~~~~~W~~~~~~ 144 (490)
.++.|+.+.... +..+-|..+ ...++..||.+.+..+ ..|.....|+++++.
T Consensus 290 ~EE~Gl~v~~~~~l~~~~h~~~------h~~~~~~~~~~~~~~~-~~e~~~~~Wv~~~el 342 (369)
T 3fsp_A 290 GEQYGLQVELTEPIVSFEHAFS------HLVWQLTVFPGRLVHG-GPVEEPYRLAPEDEL 342 (369)
T ss_dssp TTSSSCCEEECCCCCEEEEECS------SEEEEEEEEEEEECCS-SCCCTTEEEEEGGGG
T ss_pred HHHhCCceeeecccccEEEEcc------eEEEEEEEEEEEEcCC-CCCccccEEeeHHHh
Confidence 888898877544 333444333 2478889999988765 567788899997764
No 140
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=80.06 E-value=2 Score=33.96 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=40.5
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeech
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSL 477 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~ 477 (490)
+|+..+.+|+.|..||++.+ +++ ..++..||..|++.|.|.+........|+.
T Consensus 27 ~Il~~L~~~~~~~~ela~~l--~is-------~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l 79 (98)
T 3jth_A 27 QILCMLHNQELSVGELCAKL--QLS-------QSALSQHLAWLRRDGLVTTRKEAQTVYYTL 79 (98)
T ss_dssp HHHHHTTTSCEEHHHHHHHH--TCC-------HHHHHHHHHHHHHTTSEEEECCTTCCEEEE
T ss_pred HHHHHHhcCCCCHHHHHHHH--CcC-------HHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence 57777777778999999887 333 457889999999999998877665555544
No 141
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=79.90 E-value=1.1 Score=43.78 Aligned_cols=96 Identities=15% Similarity=0.174 Sum_probs=60.9
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
..++||+|... ...|.||++.++. +|. + .+++..++.++.|+.+..
T Consensus 138 ~l~vLl~~r~~--------------~g~W~lPGG~Ve~--GEs-----------------~-~eAA~REl~EETGl~~~~ 183 (292)
T 1q33_A 138 ILQFVAIKRKD--------------CGEWAIPGGMVDP--GEK-----------------I-SATLKREFGEEALNSLQK 183 (292)
T ss_dssp CEEEEEEECTT--------------TCSEECCCEECCT--TCC-----------------H-HHHHHHHHHHHHSCGGGS
T ss_pred ceEEEEEEecC--------------CCcEeCCCcccCC--CCC-----------------H-HHHHHHHHHHHhCCcccc
Confidence 34799998754 1589999998874 444 2 567889999999988522
Q ss_pred ------------Cccee------ecccccCCCCCCCCeeeEEEEEeEcCCCc---------cccccccccCCHHHHH
Q 011237 96 ------------GGEWK------LWKCVEEPEFGPGLTIHTVYIMGKLLDGN---------QILQEGCKWMSTQSCI 145 (490)
Q Consensus 96 ------------~~~~~------~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---------~~e~~~~~W~~~~~~l 145 (490)
..+.. |..+...+..+...++.|..|.+..+.++ ..|...+.|++.+++.
T Consensus 184 ~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dpr~~d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~ 260 (292)
T 1q33_A 184 TSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKL 260 (292)
T ss_dssp CSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTC
T ss_pred ccccchhhHHHHHHHhhcccceeecccccCCCCCcccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCc
Confidence 11111 22233333111223777888877654332 4688899999987754
No 142
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=79.72 E-value=2.1 Score=32.85 Aligned_cols=58 Identities=9% Similarity=-0.014 Sum_probs=42.3
Q ss_pred HHHHHHHHc---CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc-cceeeec
Q 011237 415 AAILQAIEN---GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS-LESFNSS 476 (490)
Q Consensus 415 ~~il~~l~~---g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~-~~~~~~~ 476 (490)
..|++.+.+ ++.|+.||.+.+-...+. +...++.-+|+.|++.|.|.+... ++...|.
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~----is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~ 81 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEE----IGLATVYRVLNQFDDAGIVTRHNFEGGKSVFE 81 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHHTSEEEEECGGGCEEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCC----CCHhhHHHHHHHHHHCCCeEEEeeCCCceEee
Confidence 467887754 467999999998654331 234579999999999999998765 4555554
No 143
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=79.40 E-value=3.8 Score=35.91 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=50.9
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCcCCCCccccccccccccccchhhhHHHHHHHHcCCeecc
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (490)
+.+.||+|+. ...|.||++.++. +|. ..+++..++.++.|+.+..
T Consensus 26 ~~~vLL~~r~---------------~g~w~lPgG~ve~--gEs------------------~~~aa~REl~EEtGl~~~~ 70 (163)
T 3f13_A 26 PDGVLVTASR---------------GGRYNLPGGKANR--GEL------------------RSQALIREIREETGLRINS 70 (163)
T ss_dssp TTEEEEEECC------------------BBCSEEECCT--TCC------------------HHHHHHHHHHHHHCCCCCE
T ss_pred CCEEEEEEEC---------------CCeEECCceeCCC--CCC------------------HHHHHHHHHHHHHCcccce
Confidence 3489999874 2479999988773 444 2577899999999998754
Q ss_pred CcceeecccccCCCCCCCCeeeEEEEEeEcCCCc---cccccccccCC
Q 011237 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMS 140 (490)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q---~~e~~~~~W~~ 140 (490)
. ..+..+..+ . ....+|++.+ +|+ ..|.....|++
T Consensus 71 ~--~~l~~~~~~------~-~~~~~f~~~~-~~~~~~~~E~~~~~W~~ 108 (163)
T 3f13_A 71 M--LYLFDHITP------F-NAHKVYLCIA-QGQPKPQNEIERIALVS 108 (163)
T ss_dssp E--EEEEEEECS------S-EEEEEEEEEC--CCCCCCTTCCEEEEES
T ss_pred e--EEEEEEecC------C-eEEEEEEEEE-CCcCccCCCceEEEEEC
Confidence 2 333333221 1 4455666665 344 34777888987
No 144
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=78.51 E-value=4.1 Score=32.46 Aligned_cols=54 Identities=6% Similarity=0.121 Sum_probs=41.4
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeechh
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSLV 478 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~~ 478 (490)
+|+..+.+|+.|..||++.+ +++ ..++..||..|++.|.|.+........|+..
T Consensus 27 ~Il~~L~~~~~~~~ela~~l--~is-------~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~ 80 (102)
T 3pqk_A 27 MLVCTLVEGEFSVGELEQQI--GIG-------QPTLSQQLGVLRESGIVETRRNIKQIFYRLT 80 (102)
T ss_dssp HHHHHHHTCCBCHHHHHHHH--TCC-------TTHHHHHHHHHHHTTSEEEECSSSCCEEEEC
T ss_pred HHHHHHHhCCCCHHHHHHHH--CcC-------HHHHHHHHHHHHHCCCeEEEEeCCEEEEEEC
Confidence 57777777888999999887 343 2357889999999999998776655555543
No 145
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=77.75 E-value=3.4 Score=31.57 Aligned_cols=57 Identities=7% Similarity=0.048 Sum_probs=42.1
Q ss_pred HHHHHHH-cCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeech
Q 011237 416 AILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSL 477 (490)
Q Consensus 416 ~il~~l~-~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~ 477 (490)
.|+..+. .++.|..||++.+-.+- .+...++..+|+.|++.|.|.+......+.|+.
T Consensus 13 ~vL~~L~~~~~~t~~ei~~~l~~~~-----~~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y~~ 70 (82)
T 1p6r_A 13 EVMKVIWKHSSINTNEVIKELSKTS-----TWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTP 70 (82)
T ss_dssp HHHHHHHTSSSEEHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHhhcC-----CccHHHHHHHHHHHHHCCCeEEEecCCEEEEEe
Confidence 4666654 45679999999875321 123467899999999999999988777777753
No 146
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=74.77 E-value=2.4 Score=36.84 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeee
Q 011237 409 NRRAREAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNS 475 (490)
Q Consensus 409 ~~~~r~~~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~ 475 (490)
...++.++|++.+++|+.|..+|++.+- + .-+.+.-||..|+++|.|... ..|+-.|
T Consensus 8 ~v~erk~~ILE~Lk~G~~~t~~Iak~LG--l-------Shg~aq~~Ly~LeREG~V~~V-k~GK~ay 64 (165)
T 2vxz_A 8 EVLVRLRDILALLADGCKTTSLIQQRLG--L-------SHGRAKALIYVLEKEGRVTRV-AFGNVAL 64 (165)
T ss_dssp HHHHHHHHHHHHHTTCCEEHHHHHHHHT--C-------CHHHHHHHHHHHHHTTSCEEE-EETTEEE
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHhC--C-------cHHHHHHHHHHHHhcCceEEE-EEccEEE
Confidence 4566777899999999889999999872 2 234578899999999999654 3444444
No 147
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=73.60 E-value=4.1 Score=30.19 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=36.8
Q ss_pred HHHHHHHHc--CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceee
Q 011237 415 AAILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFN 474 (490)
Q Consensus 415 ~~il~~l~~--g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~ 474 (490)
.+|++.+.+ ++.+..||++.+- ++ ..++..++..|+++|.|.. ...++|.
T Consensus 13 ~~IL~~L~~~~~~~s~~eLA~~lg--ls-------r~tv~~~l~~L~~~G~I~~-~~~G~y~ 64 (67)
T 2heo_A 13 QKILQVLSDDGGPVAIFQLVKKCQ--VP-------KKTLNQVLYRLKKEDRVSS-PSPKYWS 64 (67)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHC--SC-------HHHHHHHHHHHHHTTSEEE-EETTEEE
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCcEec-CCCceEe
Confidence 357777654 4579999999873 33 5678999999999999876 4446553
No 148
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=72.64 E-value=3.1 Score=32.55 Aligned_cols=50 Identities=8% Similarity=0.015 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc
Q 011237 412 AREAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 470 (490)
Q Consensus 412 ~r~~~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 470 (490)
+...+|++.+++.+.|+.||++.+- + ....+..||..|+++|.|......
T Consensus 17 ~~~~~IL~lL~~~g~sa~eLAk~Lg--i-------Sk~aVr~~L~~Le~eG~I~~~~~~ 66 (82)
T 1oyi_A 17 EIVCEAIKTIGIEGATAAQLTRQLN--M-------EKREVNKALYDLQRSAMVYSSDDI 66 (82)
T ss_dssp HHHHHHHHHHSSSTEEHHHHHHHSS--S-------CHHHHHHHHHHHHHHTSSEECSSS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCEEeCCCC
Confidence 3345677887765589999998863 2 346799999999999999987655
No 149
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=72.51 E-value=1.9 Score=40.00 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=46.4
Q ss_pred ccCCCCCccccccccCc-CCCCccccccccccccccchhhhHHHHHHHHcCCeeccCcceeecccccCCCCCCCCeeeEE
Q 011237 41 SDLWDLPAIKLNHIQGE-KSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTV 119 (490)
Q Consensus 41 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dt~ 119 (490)
...|.||++.++. +| . ..+++..++.++.|+......+..+..+.+.+ +.....-+.
T Consensus 74 ~g~w~lPGG~ve~--gE~t------------------~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~--~~~~~~~~~ 131 (217)
T 2xsq_A 74 DGRLGFPGGFVDT--QDRS------------------LEDGLNRELREELGEAAAAFRVERTDYRSSHV--GSGPRVVAH 131 (217)
T ss_dssp TSCEECSEEECCT--TCSS------------------HHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEE--CSSSSEEEE
T ss_pred CCeEECCceecCC--CCCC------------------HHHHHHHHHHHHHCCCCccceeEEEEEEeecC--CCCCeEEEE
Confidence 3579999999884 44 3 15779999999999998865444444444434 323366788
Q ss_pred EEEeEcCCCc
Q 011237 120 YIMGKLLDGN 129 (490)
Q Consensus 120 f~~a~lp~~q 129 (490)
||++.++.++
T Consensus 132 ~f~~~l~~~~ 141 (217)
T 2xsq_A 132 FYAKRLTLEE 141 (217)
T ss_dssp EEEEECCHHH
T ss_pred EEEEEecccc
Confidence 8898887553
No 150
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=72.39 E-value=4.6 Score=32.51 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=39.3
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeec
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSS 476 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~ 476 (490)
+|+..+.+++.|..||++.+- ++ ..++..||..|++.|.|.+........|+
T Consensus 30 ~IL~~L~~~~~~~~ela~~l~--is-------~stvs~~L~~L~~~Glv~~~~~gr~~~y~ 81 (106)
T 1r1u_A 30 RIMELLSVSEASVGHISHQLN--LS-------QSNVSHQLKLLKSVHLVKAKRQGQSMIYS 81 (106)
T ss_dssp HHHHHHHHCCBCHHHHHHHHT--CC-------HHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HHHHHHHhCCCCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCeEEEEeCCEEEEE
Confidence 567777677789999998873 33 45788999999999999887655544444
No 151
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=72.34 E-value=5.7 Score=30.73 Aligned_cols=46 Identities=9% Similarity=0.120 Sum_probs=34.9
Q ss_pred HHHHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHH-HHHHHHHHHHHCCccccc
Q 011237 413 REAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAAS-NVRLHVDHLADQNKLPKG 467 (490)
Q Consensus 413 r~~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~-~v~ahL~~L~~~g~i~~~ 467 (490)
..++|+..++. |+.|+.+|++.+- +... .+..||..|+++|.|.+.
T Consensus 12 ~~~~IL~~Lk~~g~~ta~eiA~~Lg---------it~~~aVr~hL~~Le~eGlV~~~ 59 (79)
T 1xmk_A 12 IKEKICDYLFNVSDSSALNLAKNIG---------LTKARDINAVLIDMERQGDVYRQ 59 (79)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHC---------GGGHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHcC---------CCcHHHHHHHHHHHHHCCCEEec
Confidence 34467777654 7789999999873 2233 689999999999999854
No 152
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=70.82 E-value=3.2 Score=33.57 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=41.0
Q ss_pred HHHHHH-cCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeech
Q 011237 417 ILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSL 477 (490)
Q Consensus 417 il~~l~-~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~ 477 (490)
|+..+. .|+.|..||++.+..+ ..+...++...|+.|+++|.|.+......+.|+.
T Consensus 40 VL~~L~~~~~~t~~eL~~~l~~~-----~~~s~sTVt~~L~rLe~KGlV~R~~~gR~~~Y~p 96 (99)
T 2k4b_A 40 VMRVIWSLGEARVDEIYAQIPQE-----LEWSLATVKTLLGRLVKKEMLSTEKEGRKFVYRP 96 (99)
T ss_dssp HHHHHHHHSCEEHHHHHHTCCGG-----GCCCHHHHHHHHHHHHHTTSCEEEEETTEEEEEC
T ss_pred HHHHHHhCCCCCHHHHHHHHhcc-----cCCCHhhHHHHHHHHHHCCCEEEEeCCCEEEEEE
Confidence 444442 4677999999987543 1123467888999999999999998887777753
No 153
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=70.45 E-value=5.9 Score=31.89 Aligned_cols=52 Identities=8% Similarity=0.047 Sum_probs=39.6
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeec
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSS 476 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~ 476 (490)
+|+..+.+|+.|..||++.+- +...++..||..|++.|.|.+........|+
T Consensus 25 ~IL~~L~~~~~~~~ela~~l~---------is~~tv~~~l~~L~~~gli~~~~~gr~~~y~ 76 (114)
T 2oqg_A 25 EILTELGRADQSASSLATRLP---------VSRQAIAKHLNALQACGLVESVKVGREIRYR 76 (114)
T ss_dssp HHHHHHHHSCBCHHHHHHHSS---------SCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHC---------cCHHHHHHHHHHHHHCCCeeEEecCCEEEEE
Confidence 577777678889999998872 2345789999999999999887665544443
No 154
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=70.41 E-value=3 Score=33.87 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=38.9
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeech
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSL 477 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~ 477 (490)
+|+..+.+|+.|..||++.+- ++ ..++..||..|++.|.|.+........|+.
T Consensus 29 ~IL~~L~~~~~s~~eLa~~lg--is-------~stvs~~L~~L~~~GlV~~~~~gr~~~y~l 81 (108)
T 2kko_A 29 QILDLLAQGERAVEAIATATG--MN-------LTTASANLQALKSGGLVEARREGTRQYYRI 81 (108)
T ss_dssp HHHHHHTTCCEEHHHHHHHHT--CC-------HHHHHHHHHHHHHHTSEEEEEETTEEEEEE
T ss_pred HHHHHHHcCCcCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence 567777667778888888762 32 457889999999999998876555444443
No 155
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=69.97 E-value=2.8 Score=34.55 Aligned_cols=54 Identities=15% Similarity=0.200 Sum_probs=41.2
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeechh
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSLV 478 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~~ 478 (490)
+|+..+.+|+.|..||++.+ ++ ...++..||..|++.|.|.+........|+..
T Consensus 22 ~Il~~L~~~~~~~~eLa~~l--~i-------s~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~ 75 (118)
T 3f6o_A 22 AVLGRLSRGPATVSELAKPF--DM-------ALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIE 75 (118)
T ss_dssp HHHHHHHTCCEEHHHHHTTC--CS-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred HHHHHHHhCCCCHHHHHHHh--Cc-------CHHHHHHHHHHHHHCCCeEEEecCCEEEEEEC
Confidence 57777778888999988765 22 34568899999999999998877665566543
No 156
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=66.14 E-value=5.2 Score=36.62 Aligned_cols=90 Identities=12% Similarity=0.024 Sum_probs=59.2
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCc-CCCCccccccccccccccchhhhHHHHHHHHcCCeec
Q 011237 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGE-KSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR 94 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~ 94 (490)
+.++||.|+ ....|.+|++.++. +| . ..+++..++.++.|+...
T Consensus 55 ~~~vLl~~r---------------~~g~w~~PGG~ve~--gE~t------------------~~~aa~REl~EEtGl~~~ 99 (212)
T 1u20_A 55 RRVLLMMMR---------------FDGRLGFPGGFVDT--RDIS------------------LEEGLKRELEEELGPALA 99 (212)
T ss_dssp CEEEEEEEE---------------TTSCEECSEEEECT--TTSC------------------HHHHHHHHHHHHHCGGGG
T ss_pred CCEEEEEEe---------------CCCeEECCCcccCC--CCCC------------------HHHHHHHHHHHHHCCCcc
Confidence 347888876 15789999988774 44 2 156789999999999887
Q ss_pred cCcce---eecccccCCCCCCCCeeeEEEEEeEcCCCc--------------cccccccccCCHHHH
Q 011237 95 DGGEW---KLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--------------QILQEGCKWMSTQSC 144 (490)
Q Consensus 95 ~~~~~---~~~~w~~~~~~~~~~~~dt~f~~a~lp~~q--------------~~e~~~~~W~~~~~~ 144 (490)
...+. ++..... . .+ .++-..||++.+..++ ..|.....|++..++
T Consensus 100 ~~~l~~~~~~~~~~~-~--~~-~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el 162 (212)
T 1u20_A 100 TVEVTEDDYRSSQVR-E--HP-QKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTL 162 (212)
T ss_dssp GCCCCGGGEEEEEEE-C--TT-SCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBC
T ss_pred ccceeeeeEEEeccc-c--CC-CcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHh
Confidence 55321 2222111 1 22 5778889999887654 234456789886654
No 157
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=66.06 E-value=3.9 Score=33.74 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=39.9
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeechh
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSLV 478 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~~ 478 (490)
+|+..+.+|+.+..||++.+ ++ ...++..||..|++.|.|.+........|+..
T Consensus 25 ~IL~~L~~~~~~~~eLa~~l--gi-------s~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~ 78 (118)
T 2jsc_A 25 RILVALLDGVCYPGQLAAHL--GL-------TRSNVSNHLSCLRGCGLVVATYEGRQVRYALA 78 (118)
T ss_dssp HHHHHHHTTCCSTTTHHHHH--SS-------CHHHHHHHHHHHTTTTSEEEEECSSSEEEEES
T ss_pred HHHHHHHcCCCCHHHHHHHH--Cc-------CHHHHHHHHHHHHHCCceEEEEECCEEEEEEC
Confidence 57777777778888888876 23 24578899999999999988766554555443
No 158
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=65.69 E-value=7.2 Score=32.45 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=40.1
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeech
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSL 477 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~ 477 (490)
+|+..+.+++.+..||++.+- ++ ..++..||..|++.|.+..........|+.
T Consensus 50 ~IL~~L~~~~~s~~ela~~lg--is-------~stvs~~L~~Le~~Glv~~~~~gr~~~y~l 102 (122)
T 1r1t_A 50 RLLSLLARSELCVGDLAQAIG--VS-------ESAVSHQLRSLRNLRLVSYRKQGRHVYYQL 102 (122)
T ss_dssp HHHHHHTTCCBCHHHHHHHHT--CC-------HHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence 577777777789999998873 32 457889999999999999876655444543
No 159
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=64.81 E-value=13 Score=28.70 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHc-C---CCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc-cceeee
Q 011237 412 AREAAILQAIEN-G---VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS-LESFNS 475 (490)
Q Consensus 412 ~r~~~il~~l~~-g---~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~-~~~~~~ 475 (490)
+..++|++.+.+ + ..|+.||++.+- ++ ..++..+|..|+++|+|.+.-. .+.|.-
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lg--vs-------r~tV~~~L~~Le~~G~I~~~g~~~~~W~i 69 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLG--TP-------KKEINRVLYSLAKKGKLQKEAGTPPLWKI 69 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHT--CC-------HHHHHHHHHHHHHTTSEEEESSSSCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCEEecCCCCCeeEE
Confidence 334567777765 4 469999999974 33 4579999999999999986532 345544
No 160
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=63.60 E-value=3.6 Score=35.87 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=41.1
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeechh
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSLV 478 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~~ 478 (490)
+|+..+.+++.|+.||+..+- + ...++.-||..|++.|.|.+........|+..
T Consensus 62 ~IL~~L~~~~~t~~eLa~~lg--l-------s~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt 115 (151)
T 3f6v_A 62 RLVQLLTSGEQTVNNLAAHFP--A-------SRSAISQHLRVLTEAGLVTPRKDGRFRYYRLD 115 (151)
T ss_dssp HHHHHGGGCCEEHHHHHTTSS--S-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred HHHHHHHhCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEC
Confidence 577777778889999987752 2 35678899999999999998876665555543
No 161
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=63.13 E-value=6.2 Score=30.40 Aligned_cols=46 Identities=11% Similarity=0.077 Sum_probs=36.0
Q ss_pred HHHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccc
Q 011237 414 EAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 468 (490)
Q Consensus 414 ~~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 468 (490)
+.+|++.+++ |..++.||++.+- +. ..+++.-|+.|+++|+|.+..
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l~--VS-------~~TIRrdL~~Le~~G~l~R~~ 50 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTLN--TP-------QPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHTT--CC-------HHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCEEEec
Confidence 3567887764 6779999998863 22 457899999999999998873
No 162
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=62.31 E-value=8.7 Score=29.85 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=39.8
Q ss_pred HHHHHHHHcC-CCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeech
Q 011237 415 AAILQAIENG-VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSL 477 (490)
Q Consensus 415 ~~il~~l~~g-~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~ 477 (490)
.+|+..+.++ +.|..||++.+- + ...++..||..|++.|.|.+........|+.
T Consensus 27 ~~il~~l~~~~~~s~~ela~~l~--i-------s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l 81 (99)
T 3cuo_A 27 LLILCMLSGSPGTSAGELTRITG--L-------SASATSQHLARMRDEGLIDSQRDAQRILYSI 81 (99)
T ss_dssp HHHHHHHTTCCSEEHHHHHHHHC--C-------CHHHHHHHHHHHHHTTSEEEEECSSCEEEEE
T ss_pred HHHHHHHHhCCCcCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCEEEEecCCEEEEEE
Confidence 3577777665 669999998872 3 2457889999999999999877655545543
No 163
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=61.46 E-value=14 Score=28.91 Aligned_cols=43 Identities=12% Similarity=0.151 Sum_probs=34.7
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 468 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 468 (490)
+|+..+ +++.|..||++.+ .+ ...++..||..|++.|.|.+..
T Consensus 35 ~Il~~L-~~~~~~~eLa~~l--~i-------s~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 35 KILRML-DKGRSEEEIMQTL--SL-------SKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HHHHHH-HTTCCHHHHHHHH--TC-------CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHH-cCCCCHHHHHHHH--Cc-------CHHHHHHHHHHHHHCCCEEEEC
Confidence 577777 7788999999887 23 3457889999999999998766
No 164
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=61.30 E-value=9.2 Score=29.17 Aligned_cols=46 Identities=28% Similarity=0.384 Sum_probs=35.5
Q ss_pred HHHHHHHHHc-C---CCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccc
Q 011237 414 EAAILQAIEN-G---VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 468 (490)
Q Consensus 414 ~~~il~~l~~-g---~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 468 (490)
..+|++++.+ + ..|+.||++.+- ++ ..++..||..|+++|.|.+.-
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lg--vs-------~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLG--TP-------KKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHC--CC-------HHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCEEecC
Confidence 4567777765 4 469999999984 33 357999999999999998753
No 165
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=60.03 E-value=7.2 Score=32.31 Aligned_cols=52 Identities=19% Similarity=0.023 Sum_probs=36.1
Q ss_pred HHHHHHH-cCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeec
Q 011237 416 AILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSS 476 (490)
Q Consensus 416 ~il~~l~-~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~ 476 (490)
+|+..+. +|+.|..||++.+- ++ ..++.-||..|++.|.|.+........|+
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l~--is-------~stvs~~L~~L~~~Glv~~~~~gr~~~y~ 98 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANILG--VT-------IANASHHLRTLYKQGVVNFRKEGKLALYS 98 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHT--CC-------HHHHHHHHHHHHHTTSEEEC----CCEEE
T ss_pred HHHHHHHHCCCcCHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCeEEEEECCEEEEE
Confidence 5777765 57779999998873 33 45788999999999999877655433443
No 166
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=59.65 E-value=5.7 Score=31.35 Aligned_cols=45 Identities=9% Similarity=0.109 Sum_probs=35.7
Q ss_pred HHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccc
Q 011237 415 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 468 (490)
Q Consensus 415 ~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 468 (490)
.+|++.+++ |..++.||++.+- +. ..+++.-|+.|+++|+|.+..
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~--VS-------~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQ--TP-------QPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTT--CC-------HHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHC--cC-------HHHHHHHHHHHHHCCCEEEEe
Confidence 467777764 6679999998863 22 457899999999999999885
No 167
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=57.14 E-value=15 Score=29.34 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=37.2
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLP 465 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~ 465 (490)
.|++.+ +|..|+.+|++.+-.+++...-. ....+.+.|+.|.++|.|+
T Consensus 47 ~Iw~l~-DG~rtv~eIv~~L~~~y~~~~e~-i~~DV~~FL~~L~~~g~I~ 94 (95)
T 3g2b_A 47 VVAQRY-DGTQSLAQIAQTLAAEFDADASE-IETDVIELTTTLHQKRLLR 94 (95)
T ss_dssp HHHHHC-CSSSCHHHHHHHHHHHTTCCHHH-HHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHc-cCCCCHHHHHHHHHHHcCCcHHH-HHHHHHHHHHHHHHCcCEe
Confidence 688888 47789999999987766633222 3457999999999999885
No 168
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=54.14 E-value=11 Score=31.23 Aligned_cols=51 Identities=12% Similarity=0.040 Sum_probs=40.4
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
-|+..+.+++.+-+||.+.+-. ...|.+...++..+|..|+++|.|.....
T Consensus 17 ~IL~lL~~~p~~Gyei~~~l~~---~g~~~is~gtlY~~L~rLe~~GlI~~~~~ 67 (116)
T 3hhh_A 17 LVLAIIQRKETYGYEITKILND---QGFTEIVEGTVYTILLRLEKNQWVIAEKK 67 (116)
T ss_dssp HHHHHHHHSCBCHHHHHHHHHT---TSCSSCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHhcCCCCHHHHHHHHHH---cCCCCCCccHHHHHHHHHHHCCCEEEEee
Confidence 4788888889899999999865 12334456789999999999999998763
No 169
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=53.84 E-value=9.9 Score=34.72 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=37.0
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
+|+..+.+|+.+..||.+.+- +...++..||..|++.|.|.+...
T Consensus 19 ~IL~~L~~~~~s~~eLa~~l~---------is~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 19 RILFLLTKRPYFVSELSRELG---------VGQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp HHHHHHHHSCEEHHHHHHHHT---------CCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHhCCCCHHHHHHHHC---------cCHHHHHHHHHHHHHCCceEEEee
Confidence 577777778889999999882 235678999999999999998665
No 170
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=52.09 E-value=14 Score=31.24 Aligned_cols=57 Identities=9% Similarity=-0.037 Sum_probs=41.5
Q ss_pred HHHHHHHc---CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc-cceeeec
Q 011237 416 AILQAIEN---GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS-LESFNSS 476 (490)
Q Consensus 416 ~il~~l~~---g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~-~~~~~~~ 476 (490)
.|++.+.+ ++.|++||.+.+-...+. +...++.-+|+.|++.|.|.+... ++..+|.
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~----is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 82 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGED----VGLATVYRVLTQFEAAGLVVRHNFDGGHAVFE 82 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHHTSEEEECSSSSSCEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCC----CCHHHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 57777754 467999999998765442 234578999999999999987654 4555554
No 171
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=52.05 E-value=9.4 Score=31.46 Aligned_cols=51 Identities=8% Similarity=0.125 Sum_probs=40.1
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
-|+..+.+++.+.++|.+.+-. ...|.+...++..+|..|+++|.|.+...
T Consensus 13 ~IL~~L~~~~~~Gyei~~~l~~---~~~~~is~gtlY~~L~rLe~~GlI~~~~~ 63 (115)
T 4esb_A 13 CILYIISQEEVYGYELSTKLNK---HGFTFVSEGSIYPLLLRMQKEKLIEGTLK 63 (115)
T ss_dssp HHHHHHHHSCEEHHHHHHHHHH---TTCTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHHH---cCCCCCCcChHHHHHHHHHHCCCeEEEee
Confidence 4777777788899999998865 12344556789999999999999998753
No 172
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=50.79 E-value=17 Score=27.46 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=33.1
Q ss_pred HHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccc
Q 011237 416 AILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 467 (490)
Q Consensus 416 ~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 467 (490)
+|++.+.+ ++.|..||++.+- + ...++..+|+.|+++|.|.+.
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lg--v-------s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALA--V-------TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHT--S-------CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCEEEe
Confidence 56666654 6789999999872 3 345789999999999999853
No 173
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=50.00 E-value=23 Score=27.50 Aligned_cols=66 Identities=12% Similarity=0.012 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCC--CHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeechhccccccc
Q 011237 412 AREAAILQAIENGVE--TLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSLVEFDDKVG 485 (490)
Q Consensus 412 ~r~~~il~~l~~g~~--T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~~~~~~~~~ 485 (490)
+.+++|++.+++.+. |-++|... +++++... ...-++.|-.+|+|......+.+.|+.+.-++.+|
T Consensus 14 ~ie~~IL~l~~~~P~GItd~~L~~~-~p~~~~~~-------r~~aIN~LL~~gkiel~K~~~~liYr~k~~~~~~~ 81 (81)
T 2dk8_A 14 EIENRIIELCHQFPHGITDQVIQNE-MPHIEAQQ-------RAVAINRLLSMGQLDLLRSNTGLLYRIKDSGPSSG 81 (81)
T ss_dssp HHHHHHHHHHHHCSSCEEHHHHHHH-CTTSCHHH-------HHHHHHHHHHHTSEEEEECSSSEEEEECCCCCCCC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHH-CCCCCHHH-------HHHHHHHHHHcCCeEEEecCCeEEEEecccccCCC
Confidence 344568888876543 55555544 45655322 33447888899999987777888888777665543
No 174
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=49.87 E-value=11 Score=33.54 Aligned_cols=53 Identities=17% Similarity=0.312 Sum_probs=40.8
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
.|+..+.+++++.+||.+.+-..+. ..|.....++..+|..|+++|.|.....
T Consensus 6 ~iL~lL~~~~~~gyel~~~l~~~~~-~~~~~s~~~ly~~L~~Le~~GlI~~~~~ 58 (179)
T 1yg2_A 6 VILTVLSTRDATGYDITKEFSASIG-YFWKASHQQVYRELNKMGEQGLVTCVLE 58 (179)
T ss_dssp HHHHHHHHCCBCHHHHHHHHTTGGG-GTCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHhC-CccCCCcCcHHHHHHHHHHCCCeEEEee
Confidence 5777777789999999988843332 2445556789999999999999987654
No 175
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=49.83 E-value=17 Score=29.43 Aligned_cols=53 Identities=21% Similarity=0.178 Sum_probs=39.0
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeech
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSL 477 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~ 477 (490)
+|+..+.+++.+..++++.+. + ...++..||..|++.|.+.+........|+.
T Consensus 36 ~il~~L~~~~~s~~ela~~l~--i-------s~stvsr~l~~Le~~Glv~~~~~~r~~~~~~ 88 (119)
T 2lkp_A 36 MILTQLRNGPLPVTDLAEAIG--M-------EQSAVSHQLRVLRNLGLVVGDRAGRSIVYSL 88 (119)
T ss_dssp HHHHHHHHCCCCHHHHHHHHS--S-------CHHHHHHHHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCEEEEecCCEEEEEE
Confidence 466666556779999998873 2 2456888999999999998876655555544
No 176
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=49.65 E-value=15 Score=29.84 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=38.1
Q ss_pred HHHHHHHcCCCC--HHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeech
Q 011237 416 AILQAIENGVET--LFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSL 477 (490)
Q Consensus 416 ~il~~l~~g~~T--~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~ 477 (490)
.|+..+.+|+.+ ..||.+.+- . +...++-.||+.|++.|.|.+... ....|+.
T Consensus 31 ~IL~~L~~g~~~~~~~eL~~~l~-g-------is~~~ls~~L~~Le~~GlV~r~~~-r~~~y~L 85 (111)
T 3df8_A 31 LIISVLGNGSTRQNFNDIRSSIP-G-------ISSTILSRRIKDLIDSGLVERRSG-QITTYAL 85 (111)
T ss_dssp HHHHHHTSSSSCBCHHHHHHTST-T-------CCHHHHHHHHHHHHHTTSEEEEES-SSEEEEE
T ss_pred HHHHHHhcCCCCCCHHHHHHHcc-C-------CCHHHHHHHHHHHHHCCCEEEeec-CcEEEEE
Confidence 466677677777 999987651 1 234568889999999999998766 4445543
No 177
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=49.04 E-value=25 Score=29.32 Aligned_cols=58 Identities=9% Similarity=0.006 Sum_probs=41.7
Q ss_pred HHHHHHHc--CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc-cceeeech
Q 011237 416 AILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS-LESFNSSL 477 (490)
Q Consensus 416 ~il~~l~~--g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~-~~~~~~~~ 477 (490)
.|++.+.+ ++.|++||.+.+-.+.+. +...++.-.|+.|++.|.|.+... ++..+|..
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~----is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~~ 75 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGEN----IGLTTVYRTLQSMASSGLVDTLHTDTGESVYRR 75 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCC----CCHHHHHHHHHHHHTTTSEEEEECTTSCEEEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCC----CCHhhHHHHHHHHHHCCCEEEEEeCCCceEEEe
Confidence 46666643 466999999998665442 234578899999999999987654 56666643
No 178
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=47.91 E-value=21 Score=28.61 Aligned_cols=46 Identities=9% Similarity=0.070 Sum_probs=34.7
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
.|+..+.+|+.+..||.+.+- .+...++..+|+.|++.|.|.+...
T Consensus 18 ~IL~~L~~~~~~~~eLa~~l~--------~is~~tls~~L~~Le~~GlI~r~~~ 63 (107)
T 2hzt_A 18 VILXHLTHGKKRTSELKRLMP--------NITQKMLTQQLRELEADGVINRIVY 63 (107)
T ss_dssp HHHHHHTTCCBCHHHHHHHCT--------TSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHhCCCCHHHHHHHhc--------CCCHHHHHHHHHHHHHCCCEEEeec
Confidence 466666677789999988751 1234568889999999999998765
No 179
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=47.68 E-value=22 Score=29.14 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=35.0
Q ss_pred HHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccc
Q 011237 415 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 467 (490)
Q Consensus 415 ~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 467 (490)
.+|++.+++ |+.|+.+|+..+.-. +....+..||..|++.|.|...
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~~g-------iS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDEIR-------ISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTTCC-------SCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhcC-------CCHHHHHHHHHHHHHCCCEEec
Confidence 467888765 888999999865211 2345689999999999999875
No 180
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=47.49 E-value=13 Score=30.58 Aligned_cols=53 Identities=9% Similarity=0.149 Sum_probs=40.3
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
-|+..+.+++.+-++|.+.+-..... .|.+...++..+|..|+++|.|.+...
T Consensus 16 ~IL~~L~~~~~~Gyei~~~l~~~~~~-~~~i~~gtly~~L~rLe~~GlI~~~~~ 68 (116)
T 3f8b_A 16 ILLNVLKQGDNYVYGIIKQVKEASNG-EMELNEATLYTIFKRLEKDGIISSYWG 68 (116)
T ss_dssp HHHHHHHHCCBCHHHHHHHHHHHTTT-CCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHhCC-CCCCCcchHHHHHHHHHHCCCEEEEee
Confidence 47888888888999999988542222 233456779999999999999998753
No 181
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=46.23 E-value=14 Score=30.48 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=39.7
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
-|+..+.+++.+.+||.+.+-.. . .+.+...++..+|..|+++|.|.+...
T Consensus 15 ~IL~lL~~~p~~Gyei~~~l~~~-g--~~~is~gtlY~~L~rLe~~GlI~~~~~ 65 (117)
T 4esf_A 15 CVLEIISRRETYGYEITRHLNDL-G--FTEVVEGTVYTILVRLEKKKLVNIEKK 65 (117)
T ss_dssp HHHHHHHHSCBCHHHHHHHHHHH-T--CTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHHHc-C--CCCCCccHHHHHHHHHHHCCCEEEEee
Confidence 47788878888999999988432 1 233456779999999999999998764
No 182
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=45.96 E-value=28 Score=29.61 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=41.2
Q ss_pred HHHHHHHc--CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc-ceeeec
Q 011237 416 AILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL-ESFNSS 476 (490)
Q Consensus 416 ~il~~l~~--g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~-~~~~~~ 476 (490)
.|++.+.+ ++.|++||.+.+-.+.+. +...+|.-+|+.|++.|.|.+.... +..+|.
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~----is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 85 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPN----MSVATVYNNLRVFRESGLVKELTYGDASSRFD 85 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTT----CCHHHHHHHHHHHHHTTSEEEECCTTSCCEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCC----CChhhHHHHHHHHHHCCCEEEEeeCCCceEEE
Confidence 46666643 467999999998665442 2345789999999999999876554 455554
No 183
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=44.96 E-value=13 Score=30.48 Aligned_cols=51 Identities=14% Similarity=0.205 Sum_probs=39.4
Q ss_pred HHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 417 ILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 417 il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
|+..+.+++..-++|.+.+-...+ .+.+...++..+|..|+++|.|.....
T Consensus 27 IL~lL~~~~~~Gyei~~~l~~~~~--~~~is~gtLY~~L~rLe~~GlI~~~~~ 77 (115)
T 2dql_A 27 ILYVLLQGESYGTELIQQLETEHP--TYRLSDTVLYSAIKFLEDNRAITGYWK 77 (115)
T ss_dssp HHHHHTTSCBCHHHHHHHHHHHCT--TEECCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHhCCCCHHHHHHHHHHHcC--CCCCCcchHHHHHHHHHHCCCEEEEee
Confidence 788888888899999888754321 334456789999999999999998753
No 184
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=44.22 E-value=19 Score=30.92 Aligned_cols=57 Identities=7% Similarity=-0.006 Sum_probs=41.4
Q ss_pred HHHHHHHc---CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc-cceeeec
Q 011237 416 AILQAIEN---GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS-LESFNSS 476 (490)
Q Consensus 416 ~il~~l~~---g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~-~~~~~~~ 476 (490)
.|++.+.+ ++.|++||.+.+-...+. +...+|.-.|+.|++.|.|.+... ++..+|.
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~----is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 81 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEE----IGLATVYRVLNQFDDAGIVTRHHFEGGKSVFE 81 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHTTSEEEEECGGGCEEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCC----CCHHHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 57777743 467999999998765442 234578899999999999987654 4555564
No 185
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=44.22 E-value=53 Score=30.67 Aligned_cols=71 Identities=8% Similarity=-0.031 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHcCCeecc---Ccceeecc--cccCCCCCCC---CeeeEEEEEeEcCCC---ccccccccccCCHHHHHH
Q 011237 78 IESALNQILEQLGFGVRD---GGEWKLWK--CVEEPEFGPG---LTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCIN 146 (490)
Q Consensus 78 ~~~~~~~~l~~~gl~l~~---~~~~~~~~--w~~~~~~~~~---~~~dt~f~~a~lp~~---q~~e~~~~~W~~~~~~l~ 146 (490)
.+++..++.++.|+.... +.+.+... |..+. ... ..++..| ++..+.. |..|.....|++++++.+
T Consensus 124 ~eAA~REl~EElGi~~~~v~~~~l~~l~~~~y~~~~--~~~~~~~e~~~vf-~~~~~~~~~~~~~Ev~~~~wv~~eel~~ 200 (246)
T 2pny_A 124 RRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKS--DRIWGEHEICYLL-LVRKNVTLNPDPSETKSILYLSQEELWE 200 (246)
T ss_dssp HHHHHHHHHHHHCCCTTTCCGGGSEEEEEEEEEEES--SSSBEEEEEEEEE-EEECCCCCCCCTTTEEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHCCCccccCccccEEEEEEEEEecC--CCceeeeEEEEEE-EEEECCCCCCChHHeeEEEEEeHHHHHH
Confidence 578999999999998642 22333332 33322 111 1244444 4444321 257889999999999999
Q ss_pred HHHcc
Q 011237 147 CLAEV 151 (490)
Q Consensus 147 ~~~~~ 151 (490)
++...
T Consensus 201 ~l~~~ 205 (246)
T 2pny_A 201 LLERE 205 (246)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88773
No 186
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=43.84 E-value=31 Score=29.19 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=41.4
Q ss_pred HHHHHHHc--CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc-cceeeec
Q 011237 416 AILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS-LESFNSS 476 (490)
Q Consensus 416 ~il~~l~~--g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~-~~~~~~~ 476 (490)
.|++.+.+ ++.|++||...+-.+.+. +...++.-.|+.|++.|.|.+... ++...|.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~----is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~ 77 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDA----VGLTTVYRTLQSLADAGEVDVLRTAEGESVYR 77 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHTTSSEEEECTTSCEEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCC----CCHHHHHHHHHHHHHCCCEEEEEcCCCceEEE
Confidence 57777754 466999999998655442 234578889999999999987654 4555553
No 187
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=43.62 E-value=14 Score=29.92 Aligned_cols=49 Identities=14% Similarity=0.020 Sum_probs=38.1
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
.|+..+.+++.+-.+|.+.+-.. +.+...++..+|..|+++|.|.+...
T Consensus 13 ~IL~~L~~~~~~gyel~~~l~~~-----~~i~~~tly~~L~~Le~~GlI~~~~~ 61 (108)
T 3l7w_A 13 LILAIVSKHDSYGYDISQTIKLI-----ASIKESTLYPILKKLEKAGYLSTYTQ 61 (108)
T ss_dssp HHHHHHHHSCEEHHHHHHHHTTT-----CCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHHHH-----hCCCcChHHHHHHHHHHCCCeEEEee
Confidence 47777777888899999887542 22345678999999999999998754
No 188
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=41.95 E-value=32 Score=28.79 Aligned_cols=57 Identities=12% Similarity=0.051 Sum_probs=39.7
Q ss_pred HHHHHHHHc--CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeec
Q 011237 415 AAILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSS 476 (490)
Q Consensus 415 ~~il~~l~~--g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~ 476 (490)
..|+..+-+ ++.|..||++.+..+ . .+...++...|+.|+++|.|.+......+.|.
T Consensus 12 ~~vL~~L~~~~~~~t~~el~~~l~~~-~----~~~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~ 70 (138)
T 2g9w_A 12 RAVMDHLWSRTEPQTVRQVHEALSAR-R----DLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYA 70 (138)
T ss_dssp HHHHHHHHTCSSCEEHHHHHHHHTTT-C----CCCHHHHHHHHHHHHHTTSEEEEC---CCEEE
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHhcc-C----CCCHHHHHHHHHHHHHCCCEEEEecCCeEEEE
Confidence 356776653 677999999998643 1 11345788899999999999998766655554
No 189
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=40.71 E-value=64 Score=29.79 Aligned_cols=117 Identities=11% Similarity=0.079 Sum_probs=64.7
Q ss_pred hhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCc-cccccccCcCC-CCccccccccccccccchhhhHHHHHH
Q 011237 9 ILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPA-IKLNHIQGEKS-EPTISIQGSEKINLGKFDIESALNQIL 86 (490)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (490)
+|-|+ +.++||.|.+.. |. .....|++|. +.+..=++|.. ++++. -.+++..++.
T Consensus 65 ~v~~~--~g~lLLq~R~~~-k~--------~~pg~W~~p~gG~v~~Ge~E~~~E~~~~------------~~~Aa~REl~ 121 (235)
T 2dho_A 65 FLFNT--ENKLLLQQRSDA-KI--------TFPGCFTNTCCSHPLSNPAELEESDALG------------VRRAAQRRLK 121 (235)
T ss_dssp EEECT--TCCEEEEEECTT-CS--------SSTTCEESSEEECCBSSHHHHCCGGGHH------------HHHHHHHHHH
T ss_pred EEEcC--CCEEEEEEecCc-CC--------CCCCcEEeccCceecCCCcccccccchh------------HHHHHHHHHH
Confidence 44554 348888765432 21 1235799994 55543322210 00000 1578999999
Q ss_pred HHcCCeecc---Ccceeecc--cccCCCCCCC---CeeeEEEEEeEcCCC---ccccccccccCCHHHHHHHHHcc
Q 011237 87 EQLGFGVRD---GGEWKLWK--CVEEPEFGPG---LTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLAEV 151 (490)
Q Consensus 87 ~~~gl~l~~---~~~~~~~~--w~~~~~~~~~---~~~dt~f~~a~lp~~---q~~e~~~~~W~~~~~~l~~~~~~ 151 (490)
++.|+.... +.+.+... |..+. ... ..++..| ++..... |..|.....|++++++.+++...
T Consensus 122 EElGi~~~~v~~~~l~~l~~~~y~~~~--~~~~~~~e~~~vf-~~~~~~~~~~~~~Ev~~~~wv~~~el~~~l~~~ 194 (235)
T 2dho_A 122 AELGIPLEEVPPEEINYLTRIHYKAQS--DGIWGEHEIDYIL-LVRMNVTLNPDPNEIKSYCYVSKEELKELLKKA 194 (235)
T ss_dssp HHHCCCGGGSCGGGSEEEEEEEEEEEC--SSSBEEEEEEEEE-EEECCCCCCCCTTTEEEEEEECHHHHHHHHHHH
T ss_pred HHHCCCccccChhhcEEEEEEEEeccC--CCccceeEEEEEE-EEEECCCCcCChHHEEEEEEEcHHHHHHHHhhc
Confidence 999998652 22333332 33322 111 1244444 4454321 25788999999999999988874
No 190
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=40.40 E-value=38 Score=27.38 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=40.2
Q ss_pred HHHHHHH-cCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeec
Q 011237 416 AILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSS 476 (490)
Q Consensus 416 ~il~~l~-~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~ 476 (490)
.|+..+- .++.|..||++.+..+.+ +...++...|+.|+++|.|.+......+.|.
T Consensus 14 ~vL~~L~~~~~~t~~el~~~l~~~~~-----~~~~Tvt~~l~rLe~kGlv~R~~~~r~~~~~ 70 (126)
T 1sd4_A 14 DVMNIIWDKKSVSANEIVVEIQKYKE-----VSDKTIRTLITRLYKKEIIKRYKSENIYFYS 70 (126)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHTTSC-----CCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HHHHHHHhcCCCCHHHHHHHHhhcCC-----CChhhHHHHHHHHHHCCceEEEeCCCeEEEE
Confidence 3444443 467799999999864311 1346788899999999999998876665553
No 191
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=40.22 E-value=21 Score=28.51 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=34.7
Q ss_pred HHHHHH-HcC-CCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccc----cccceeee
Q 011237 416 AILQAI-ENG-VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG----FSLESFNS 475 (490)
Q Consensus 416 ~il~~l-~~g-~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~----~~~~~~~~ 475 (490)
+|+..+ ..| ..|..+|++.+- +...++.-||..|+++|.|... ...+.+.+
T Consensus 22 ~Il~~l~~~g~~~s~~eLa~~lg---------vs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~ 78 (110)
T 1q1h_A 22 DVLRILLDKGTEMTDEEIANQLN---------IKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIY 78 (110)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTTT---------SCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHC---------cCHHHHHHHHHHHHHCCCEEEEecccCCCceEEE
Confidence 455554 445 568888887652 2355799999999999999887 55555544
No 192
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=39.83 E-value=22 Score=27.43 Aligned_cols=44 Identities=11% Similarity=0.075 Sum_probs=33.3
Q ss_pred HHHHHHH-cCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccc
Q 011237 416 AILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 468 (490)
Q Consensus 416 ~il~~l~-~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 468 (490)
+|+..+. .++.|..||++.+- + ...++..||..|++.|.|.+..
T Consensus 20 ~iL~~L~~~~~~~~~ela~~l~--i-------s~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 20 GIMIFLLPRRKAPFSQIQKVLD--L-------TPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTT--C-------CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhcCCcCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCEEEEe
Confidence 4666553 56779999998872 2 3456889999999999998765
No 193
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=39.80 E-value=11 Score=32.35 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=38.2
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
.|+..+.+++.+..||.+.+-..... .|.+...++..+|..|+++|.|.+...
T Consensus 45 ~IL~~L~~~~~~gyeI~~~l~~~~~~-~~~is~gtLy~~L~rLE~~GlI~~~~~ 97 (145)
T 1xma_A 45 IILSLLIEGDSYGYEISKNIRIKTDE-LYVIKETTLYSAFARLEKNGYIKSYYG 97 (145)
T ss_dssp HHHHHHHHCCEEHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHhCCCCHHHHHHHHHHhhCC-ccCcChhHHHHHHHHHHHCCCEEEEEe
Confidence 46777767788999998887432111 123445678999999999999998754
No 194
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=39.31 E-value=31 Score=31.04 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccc
Q 011237 414 EAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 467 (490)
Q Consensus 414 ~~~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 467 (490)
..+|+..+.+|+.|..||++.+- + ...++..|++.|++.|.|.+.
T Consensus 22 ~~~IL~~L~~~~~s~~eLA~~lg--l-------S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 22 RRKILKLLRNKEMTISQLSEILG--K-------TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHT--C-------CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCEEEE
Confidence 34688888778889999999873 2 345789999999999999887
No 195
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=38.26 E-value=15 Score=30.23 Aligned_cols=53 Identities=9% Similarity=0.085 Sum_probs=37.9
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHH-HHHHHHHHHHHHCCccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAA-SNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~-~~v~ahL~~L~~~g~i~~~~~ 469 (490)
.|+..+.+++.+..||.+.+-. .....+.+.. .++..+|..|+++|.|.+...
T Consensus 17 ~IL~~L~~~~~~gyel~~~l~~-~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~ 70 (118)
T 2esh_A 17 TILLLVAEKPSHGYELAERLAE-FGIEIPGIGHMGNIYRVLADLEESGFLSTEWD 70 (118)
T ss_dssp HHHHHHHHSCBCHHHHHHHHHT-TCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHHH-hCCcccCCCCcchHHHHHHHHHHCCCeEEEee
Confidence 5777777788899999999853 1110111334 568889999999999998764
No 196
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=37.48 E-value=35 Score=29.25 Aligned_cols=58 Identities=9% Similarity=0.025 Sum_probs=41.5
Q ss_pred HHHHHHHc--CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc-cceeeech
Q 011237 416 AILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS-LESFNSSL 477 (490)
Q Consensus 416 ~il~~l~~--g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~-~~~~~~~~ 477 (490)
.|++.+.+ ++.|++||.+.+-...+. +...+|.-.|+.|++.|.|.+... ++..+|..
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~----is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 91 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKN----TSISSVYRILNFLEKENFISVLETSKSGRRYEI 91 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTT----CCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCC----CCHhhHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 56776654 467999999998654331 234578889999999999987654 56666643
No 197
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=35.90 E-value=44 Score=26.23 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=42.2
Q ss_pred HHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeee
Q 011237 415 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNS 475 (490)
Q Consensus 415 ~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~ 475 (490)
+.|.+.|+. ..++-.+++..+...+..++.+ ....+...++.|.+++.+.+...+..|.|
T Consensus 26 AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p-~~~~IKk~IE~LIekeYleR~~~~~~y~Y 86 (88)
T 3o2p_E 26 ACIVRIMKAKRNLPHTTLVNECIAQSHQRFNA-KVSMVKRAIDSLIQKGYLQRGDDGESYAY 86 (88)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHHHHTTSEEECTTSSEEEE
T ss_pred eeeehhhcccccccHHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhhhHHhcCCCCCeEEe
Confidence 456777765 3347788888887655433322 33458889999999999999877666665
No 198
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=35.52 E-value=73 Score=26.94 Aligned_cols=45 Identities=7% Similarity=0.113 Sum_probs=34.8
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
.|+..+.+|+.+..||.+.+ .+. ..++..+|+.|++.|.|.+...
T Consensus 28 ~IL~~L~~g~~~~~eLa~~l--gis-------~~tls~~L~~Le~~GlI~r~~~ 72 (146)
T 2f2e_A 28 LIVRDAFEGLTRFGEFQKSL--GLA-------KNILAARLRNLVEHGVMVAVPA 72 (146)
T ss_dssp HHHHHHHTTCCSHHHHHHHH--CCC-------HHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHhCCCCHHHHHHHh--CCC-------HHHHHHHHHHHHHCCCEEEEec
Confidence 35666667788999999887 333 4568889999999999998764
No 199
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=34.92 E-value=36 Score=26.71 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=37.3
Q ss_pred HHH-HHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeeech
Q 011237 416 AIL-QAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNSSL 477 (490)
Q Consensus 416 ~il-~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~ 477 (490)
+|+ ..+.+|+.+..||++.+- + ...++..||..|++. .|..........|+.
T Consensus 31 ~IL~~l~~~~~~~~~ela~~l~--i-------s~stvs~hL~~L~~~-lv~~~~~gr~~~y~l 83 (99)
T 2zkz_A 31 KIVNELYKHKALNVTQIIQILK--L-------PQSTVSQHLCKMRGK-VLKRNRQGLEIYYSI 83 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHT--C-------CHHHHHHHHHHHBTT-TBEEEEETTEEEEEC
T ss_pred HHHHHHHHCCCcCHHHHHHHHC--c-------CHHHHHHHHHHHHHH-hhhheEeCcEEEEEE
Confidence 455 445567889999998873 2 245788999999999 887766655555544
No 200
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=34.87 E-value=19 Score=29.64 Aligned_cols=51 Identities=6% Similarity=0.155 Sum_probs=37.9
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
.|+..+.+++.+.+||.+.+-...... + ...++..+|..|+++|.|.....
T Consensus 18 ~IL~lL~~~p~~gyel~~~l~~~~~~~-i--~~gtly~~L~~Le~~GlI~~~~~ 68 (117)
T 3elk_A 18 YILKELVKRPMHGYELQKSMFETTGQA-L--PQGSIYILLKTMKERGFVISESS 68 (117)
T ss_dssp HHHHHHHHSCEEHHHHHHHHHHHHSCC-C--CTTHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHhCCC-C--CcchHHHHHHHHHHCCCEEEEee
Confidence 578888788889999999875321111 1 12678999999999999998764
No 201
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=33.98 E-value=51 Score=26.43 Aligned_cols=54 Identities=9% Similarity=0.126 Sum_probs=38.3
Q ss_pred HHHHHH-cCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeee
Q 011237 417 ILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNS 475 (490)
Q Consensus 417 il~~l~-~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~ 475 (490)
|+..+. .++.|..||+..+..+.+ +...++..+|+.|+++|.|.+...+..+.|
T Consensus 15 vL~~l~~~~~~t~~ela~~l~~~~~-----~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~ 69 (123)
T 1okr_A 15 VMNIIWMKKYASANNIIEEIQMQKD-----WSPKTIRTLITRLYKKGFIDRKKDNKIFQY 69 (123)
T ss_dssp HHHHHHHHSSEEHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHTSEEEEEETTEEEE
T ss_pred HHHHHHhCCCcCHHHHHHHHhccCC-----CcHhhHHHHHHHHHHCCCeEEEecCCeEEE
Confidence 444442 467799999998753311 234678889999999999998877665554
No 202
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=33.83 E-value=19 Score=30.78 Aligned_cols=51 Identities=8% Similarity=0.148 Sum_probs=39.3
Q ss_pred HHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 417 ILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 417 il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
|+..+.+++..-++|.+.+-.... .+.+...++..+|..|+++|.|.....
T Consensus 39 IL~lL~~~~~~Gyei~k~l~~~~~--~~~is~gtLYp~L~rLe~~GlI~~~~~ 89 (138)
T 2e1n_A 39 VLAVLRHEDSYGTELIQHLETHWP--NYRLSDTVLYTALKFLEDEQIISGYWK 89 (138)
T ss_dssp HHHHHTTSCEEHHHHHHHHHHHST--TEECCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHhCCCcHHHHHHHHHHHcC--CCCCCccHHHHHHHHHHHCCCEEEEee
Confidence 788887788889999988754321 344556789999999999999998753
No 203
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=32.90 E-value=30 Score=27.87 Aligned_cols=47 Identities=2% Similarity=0.024 Sum_probs=35.2
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 470 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 470 (490)
.|+..+.+|+.+..||.+.+- . +...++..+|+.|++.|.|.+....
T Consensus 26 ~IL~~L~~~~~~~~eLa~~l~-~-------is~~tvs~~L~~Le~~GlI~r~~~~ 72 (112)
T 1z7u_A 26 SLMDELFQGTKRNGELMRALD-G-------ITQRVLTDRLREMEKDGLVHRESFN 72 (112)
T ss_dssp HHHHHHHHSCBCHHHHHHHST-T-------CCHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred HHHHHHHhCCCCHHHHHHHhc-c-------CCHHHHHHHHHHHHHCCCEEEeecC
Confidence 466666567889999998761 1 2345688899999999999987653
No 204
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=32.26 E-value=17 Score=31.49 Aligned_cols=52 Identities=8% Similarity=0.131 Sum_probs=38.9
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
-|+..+.+++..-++|.+.+-...+ .+.+...++..+|..|+++|.|.....
T Consensus 48 ~IL~lL~~~p~~GYeI~k~l~~~~~--~~~is~gtLYp~L~rLE~~GlI~~~~~ 99 (148)
T 2zfw_A 48 YVLAVLRHEDSYGTELIQHLETHWP--NYRLSDTVLYTALKFLEDEQIISGYWK 99 (148)
T ss_dssp HHHHHHTTCCEEHHHHHHHHHHHCT--TEECCSHHHHHHHHHHHHTSSEEEECC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHcC--CCCCChhHHHHHHHHHHHCCCEEEEee
Confidence 3778887788889999988753221 233445678999999999999998753
No 205
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=31.06 E-value=75 Score=24.36 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=34.1
Q ss_pred HHHHHHH-cCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 416 AILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 416 ~il~~l~-~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
.|+..+. .++.|..||++.+- + ...++..+|+.|++.|.|.+...
T Consensus 24 ~il~~l~~~~~~s~~ela~~l~--i-------s~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 24 RIYSLLLERGGMRVSEIARELD--L-------SARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHT--C-------CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--C-------CHHHHHHHHHHHHHCCCEEEEee
Confidence 4555554 36779999998872 2 34578899999999999988654
No 206
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=30.62 E-value=56 Score=28.13 Aligned_cols=44 Identities=9% Similarity=0.216 Sum_probs=35.1
Q ss_pred HHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccc
Q 011237 415 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 467 (490)
Q Consensus 415 ~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 467 (490)
.+|++.+++ +..|..+|++.+- +...++..+++.|+++|.|.+.
T Consensus 6 ~~il~~L~~~~~~s~~~la~~lg---------~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 6 RKILRILQEDSTLAVADLAKKVG---------LSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHTTCSCSCHHHHHHHHT---------CCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHC---------cCHHHHHHHHHHHHHCCCeeec
Confidence 478888875 5679999999873 2356799999999999999854
No 207
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=30.09 E-value=33 Score=27.32 Aligned_cols=47 Identities=9% Similarity=-0.021 Sum_probs=34.9
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 470 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 470 (490)
.|+..+.+|+.+..||.+.+- .+...++-.||+.|++.|.|.+....
T Consensus 29 ~IL~~L~~~~~~~~eL~~~l~--------gis~~~ls~~L~~Le~~GlV~r~~~~ 75 (107)
T 2fsw_A 29 LIIFQINRRIIRYGELKRAIP--------GISEKMLIDELKFLCGKGLIKKKQYP 75 (107)
T ss_dssp HHHHHHTTSCEEHHHHHHHST--------TCCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHhCCcCHHHHHHHcc--------cCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 466666667788999988762 12345688899999999999987653
No 208
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=29.67 E-value=59 Score=25.06 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=33.0
Q ss_pred HHHHHH-cCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc
Q 011237 417 ILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 470 (490)
Q Consensus 417 il~~l~-~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 470 (490)
+...+. .++.|..||++.+- + ...++..+|..|++.|.|.+....
T Consensus 27 l~~l~~~~~~~t~~ela~~l~--i-------s~~tv~~~l~~L~~~g~v~~~~~~ 72 (109)
T 2d1h_A 27 LLKMVEIEKPITSEELADIFK--L-------SKTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp HHHHHHHCSCEEHHHHHHHHT--C-------CHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred HHHHHHcCCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCeEeeccc
Confidence 344444 56779999998762 2 355788999999999999987543
No 209
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=28.28 E-value=71 Score=27.29 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=33.8
Q ss_pred HHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccc
Q 011237 416 AILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 467 (490)
Q Consensus 416 ~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 467 (490)
+|++.+++ +..|..||++.+- + ...++..+++.|+++|.|.+.
T Consensus 14 ~il~~L~~~~~~s~~ela~~lg--~-------s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERVA--L-------SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHT--S-------CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCEeee
Confidence 57777754 5679999999873 2 345789999999999999864
No 210
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=27.62 E-value=1e+02 Score=23.61 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=35.7
Q ss_pred HHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeee
Q 011237 416 AILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNS 475 (490)
Q Consensus 416 ~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~ 475 (490)
.++..+.+ ++.|..||++.+-..+. +...++..+|+.|+++|.|.+........+
T Consensus 12 ~iL~~l~~~~~~~~~el~~~la~~l~-----is~~tvs~~l~~Le~~gli~r~~~~r~~~~ 67 (99)
T 1tbx_A 12 IVLAYLYDNEGIATYDLYKKVNAEFP-----MSTATFYDAKKFLIQEGFVKERQERGEKRL 67 (99)
T ss_dssp HHHHHHTTCTTCBHHHHHHHHHTTSC-----CCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHCCCEEEEecCCceEE
Confidence 35555543 56799999654432222 224467788999999999998776644443
No 211
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=26.96 E-value=65 Score=26.41 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=32.4
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
.|+..+..++.|..||++.+. + ...++..+++.|+++|.|.+...
T Consensus 42 ~iL~~l~~~~~t~~eLa~~l~--~-------s~~tvs~~l~~L~~~Glv~r~~~ 86 (146)
T 3tgn_A 42 HILMLLSEESLTNSELARRLN--V-------SQAAVTKAIKSLVKEGMLETSKD 86 (146)
T ss_dssp HHHHHHTTCCCCHHHHHHHHT--C-------CHHHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHhCCCCHHHHHHHHC--C-------CHHHHHHHHHHHHHCCCeEeccC
Confidence 456666554489999998873 2 24568889999999999998764
No 212
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=26.89 E-value=74 Score=28.27 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=31.7
Q ss_pred HHHHHHHHc-C-CCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccc
Q 011237 415 AAILQAIEN-G-VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 468 (490)
Q Consensus 415 ~~il~~l~~-g-~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 468 (490)
+.|.+.+++ | +.|..||++.+- +. ..++..||..|+++|.|.+..
T Consensus 12 ~~I~~~~~~~g~~~s~~eia~~lg--l~-------~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 12 LFIEEFIEKNGYPPSVREIARRFR--IT-------PRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHT--SC-------HHHHHHHHHHHHHTTSEECC-
T ss_pred HHHHHHHHHhCCCCCHHHHHHHcC--CC-------cHHHHHHHHHHHHCCCEEecC
Confidence 344444433 3 569999999873 33 235899999999999998764
No 213
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=26.78 E-value=80 Score=26.51 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=33.5
Q ss_pred HHHHHHH-cCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccc
Q 011237 416 AILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 467 (490)
Q Consensus 416 ~il~~l~-~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 467 (490)
+|+..++ ++..|..||++.+- + ...++..+++.|++.|.|.+.
T Consensus 11 ~iL~~L~~~~~~s~~ela~~lg--~-------s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 11 ILVRELAADGRATLSELATRAG--L-------SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHT--S-------CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCEEEE
Confidence 5677665 46779999999873 2 345789999999999999754
No 214
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=26.48 E-value=80 Score=26.36 Aligned_cols=43 Identities=9% Similarity=0.179 Sum_probs=33.9
Q ss_pred HHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccc
Q 011237 416 AILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 467 (490)
Q Consensus 416 ~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 467 (490)
+|++.+++ +..|..||++.+- + ...++..+++.|+++|.|.+.
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg--~-------s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIK--L-------SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHT--C-------CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCeEEE
Confidence 67777754 5679999999873 2 356789999999999999864
No 215
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=26.20 E-value=14 Score=33.79 Aligned_cols=63 Identities=11% Similarity=0.140 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 406 YLKNRRAREAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 406 ~l~~~~~r~~~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
+++...+.-..|+..+.+++++-+||.+.+-.... ..|.....++..+|..|+++|.|.....
T Consensus 30 l~kG~ms~r~~IL~lL~~~p~~GYeL~~~l~~~~~-~~~~~s~g~lY~~L~rLe~~GlI~~~~~ 92 (204)
T 3l9f_A 30 MGRGSMQGKDIILGILSKKERSGYEINDILQNQLS-YFYDGTYGMIYPTLRKLEKDGKITKEVV 92 (204)
T ss_dssp -----CCHHHHHHHHTSSCCEEHHHHHHHHHHTST-TTEECCTTCHHHHHHHHHHTTSEEEEEE
T ss_pred HhhchhHHHHHHHHHHHcCCCCHHHHHHHHHHHhC-CccCCCcchHHHHHHHHHHCCCeEEEee
Confidence 33333333335888888889999999998854433 2344455678889999999999987653
No 216
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=25.76 E-value=74 Score=24.20 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=40.5
Q ss_pred HHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc-ceeee
Q 011237 415 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL-ESFNS 475 (490)
Q Consensus 415 ~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~-~~~~~ 475 (490)
+.|.+.|+. ..++-.+++..+...+..++.+ ....+...++.|.+++.+++...+ ..|.|
T Consensus 14 AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p-~~~~IKk~IE~LIereYl~R~~~~~~~y~Y 75 (77)
T 3tdu_C 14 AAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKP-RVPVIKKCIDILIEKEYLERVDGEKDTYSY 75 (77)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHHHHTTSEEEETTEEEEEEE
T ss_pred eEEeeeecccceeeHHHHHHHHHHHHhCcCCC-CHHHHHHHHHHHHhhhHhhcCCCCCceEEE
Confidence 356666654 3347888888887655433322 334688899999999999998765 44444
No 217
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=25.72 E-value=68 Score=26.90 Aligned_cols=47 Identities=6% Similarity=0.070 Sum_probs=34.1
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 470 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 470 (490)
.|+..+..|+.+..||.+.+- . +....+-.+|..|++.|.|.+....
T Consensus 30 ~IL~~L~~g~~rf~eL~~~l~-g-------Is~~~Ls~~L~~Le~~GLV~R~~~~ 76 (131)
T 4a5n_A 30 ILFYHMIDGKKRFNEFRRICP-S-------ITQRMLTLQLRELEADGIVHREVYH 76 (131)
T ss_dssp HHHHHHTTSCBCHHHHHHHCT-T-------SCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHhcCCcCHHHHHHHhc-c-------cCHHHHHHHHHHHHHCCCEEEEecC
Confidence 456666567778888887751 1 2344678899999999999988654
No 218
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=25.72 E-value=82 Score=27.46 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=34.4
Q ss_pred HHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccc
Q 011237 415 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 467 (490)
Q Consensus 415 ~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 467 (490)
.+|++.+++ +..|..||++.+- + ...++..+++.|++.|.|.+.
T Consensus 30 ~~IL~~L~~~~~~s~~eLA~~lg--l-------S~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 30 KKIIKILQNDGKAPLREISKITG--L-------AESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHT--S-------CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCeEee
Confidence 367777764 6679999999873 2 355789999999999999763
No 219
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=25.35 E-value=86 Score=26.21 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=34.4
Q ss_pred HHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccc
Q 011237 415 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 467 (490)
Q Consensus 415 ~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 467 (490)
.+|+..+++ +..|..||++.+- + ...++..|++.|++.|.|.+.
T Consensus 6 ~~il~~L~~~~~~~~~ela~~lg--~-------s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 6 LRILKILQYNAKYSLDEIAREIR--I-------PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHT--S-------CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCcEEEE
Confidence 367777765 5669999999873 2 356789999999999999863
No 220
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=24.31 E-value=1.5e+02 Score=24.18 Aligned_cols=46 Identities=26% Similarity=0.221 Sum_probs=33.3
Q ss_pred HHHHHHHH-cCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 415 AAILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 415 ~~il~~l~-~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
..|+..+. .++.|..+|++.+. + ...++..+|..|++.|.|.+...
T Consensus 11 ~~i~~l~~~~~~~~~~ela~~l~--v-------s~~tvs~~l~~Le~~Glv~r~~~ 57 (142)
T 1on2_A 11 EQIYMLIEEKGYARVSDIAEALA--V-------HPSSVTKMVQKLDKDEYLIYEKY 57 (142)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHT--S-------CHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHhhcCCCCHHHHHHHhC--C-------CHHHHHHHHHHHHHCCCEEEeeC
Confidence 34554443 36779999999873 2 34568889999999999987654
No 221
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=23.60 E-value=44 Score=27.89 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=35.8
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL 470 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 470 (490)
.|+..+.+|+.+..||.+.+- . +...++-.||+.|++.|.|.+....
T Consensus 39 ~IL~~L~~g~~~~~eLa~~l~-g-------is~~tls~~L~~Le~~GlV~r~~~~ 85 (131)
T 1yyv_A 39 LILVALRDGTHRFSDLRRXMG-G-------VSEXMLAQSLQALEQDGFLNRVSYP 85 (131)
T ss_dssp HHHHHGGGCCEEHHHHHHHST-T-------CCHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHcCCCCHHHHHHHhc-c-------CCHHHHHHHHHHHHHCCcEEEEecC
Confidence 466666678889999998862 1 2345688899999999999987653
No 222
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=23.29 E-value=36 Score=28.29 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=38.6
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
.|+..+. ++.+-++|.+.+-.. . +.+...++..+|..|+++|.|.....
T Consensus 25 ~IL~lL~-~p~~GYei~~~l~~~-~---~~is~gtlY~~L~rLe~~GlI~~~~~ 73 (123)
T 3ri2_A 25 LVLSQLR-EPAYGYALVKSLADH-G---IPIEANTLYPLMRRLESQGLLASEWD 73 (123)
T ss_dssp HHHHHTT-SCEEHHHHHHHHHHT-T---CCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHc-CCCCHHHHHHHHHHh-C---CCCCcchHHHHHHHHHHCCCEEEEec
Confidence 4788888 888999999987542 1 34456678999999999999998753
No 223
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=22.86 E-value=77 Score=29.22 Aligned_cols=55 Identities=22% Similarity=0.169 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcC--CCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeee
Q 011237 412 AREAAILQAIENG--VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNS 475 (490)
Q Consensus 412 ~r~~~il~~l~~g--~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~ 475 (490)
+|.-+|++.+.+. +.|+.||++.+- + ...++.-+|..|++.|.|.+....+.|.-
T Consensus 6 ~r~l~iL~~l~~~~~~~s~~ela~~~g--l-------~~stv~r~l~~L~~~G~v~~~~~~~~Y~l 62 (241)
T 2xrn_A 6 ARAASIMRALGSHPHGLSLAAIAQLVG--L-------PRSTVQRIINALEEEFLVEALGPAGGFRL 62 (241)
T ss_dssp HHHHHHHHHHHTCTTCEEHHHHHHHTT--S-------CHHHHHHHHHHHHTTTSEEECGGGCEEEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCEEEeCCCCeEEE
Confidence 4455678877652 569999998872 3 35678999999999999998755455443
No 224
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=22.50 E-value=30 Score=30.74 Aligned_cols=46 Identities=15% Similarity=0.058 Sum_probs=34.8
Q ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccc
Q 011237 416 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFS 469 (490)
Q Consensus 416 ~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 469 (490)
+|+..+.+|+.|+.+|++.+- +++ ..++--||..|++.|.|+...+
T Consensus 27 ~il~~L~~~~~~~~~l~~~l~-~~~-------~~~~s~Hl~~L~~aglv~~~~e 72 (182)
T 4g6q_A 27 RITQLLIGRSLTTRELAELLP-DVA-------TTTLYRQVGILVKAGVLMVTAE 72 (182)
T ss_dssp HHHHHTTTSCEEHHHHHHHCT-TBC-------HHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHhCCCCHHHHHHHhc-CCC-------HHHHHHHHHHHHHCCCeEEEEe
Confidence 588888788889999998763 122 3456779999999999975544
No 225
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=22.21 E-value=86 Score=26.38 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=33.5
Q ss_pred HHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccc
Q 011237 416 AILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 467 (490)
Q Consensus 416 ~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 467 (490)
+|++.+++ +..|..||++.+- + ...++..+++.|++.|.|.+.
T Consensus 11 ~il~~L~~~~~~s~~ela~~lg--~-------s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 11 KIIKILQNDGKAPLREISKITG--L-------AESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHC--S-------CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCeEEE
Confidence 57777654 5679999999873 2 345789999999999999763
No 226
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=22.07 E-value=1.2e+02 Score=23.65 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccc
Q 011237 412 AREAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 468 (490)
Q Consensus 412 ~r~~~il~~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 468 (490)
+-...|+..+..| .+..+|+..+- + ..+.+..+++.|+++|.|.+..
T Consensus 8 eIi~~IL~~i~~~-~~~t~La~~~~--l-------s~~~~~~~l~~L~~~GLI~~~~ 54 (95)
T 1r7j_A 8 EIIQAILEACKSG-SPKTRIMYGAN--L-------SYALTGRYIKMLMDLEIIRQEG 54 (95)
T ss_dssp HHHHHHHHHHTTC-BCHHHHHHHHT--C-------CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHhC--c-------CHHHHHHHHHHHHHCCCeEEEC
Confidence 3345677777666 78888887763 2 3457899999999999998873
No 227
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=22.03 E-value=85 Score=26.39 Aligned_cols=43 Identities=12% Similarity=0.269 Sum_probs=33.8
Q ss_pred HHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccc
Q 011237 416 AILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKG 467 (490)
Q Consensus 416 ~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 467 (490)
+|++.+++ +..|..||++.+- + ...++..+++.|+++|.|.+.
T Consensus 12 ~il~~L~~~~~~s~~ela~~lg--~-------s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 12 GILEALMGNARTAYAELAKQFG--V-------SPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHT--S-------CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHcCCcceE
Confidence 57777754 5679999999873 2 356789999999999999863
No 228
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=21.86 E-value=1e+02 Score=28.48 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHc-C-CCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccceeee
Q 011237 412 AREAAILQAIEN-G-VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLESFNS 475 (490)
Q Consensus 412 ~r~~~il~~l~~-g-~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~ 475 (490)
+|.-+|++.+.+ + +.|+.||++.+- + ...++.-||..|++.|.|.+. ..+.|.-
T Consensus 8 ~r~l~iL~~l~~~~~~~~~~ela~~~g--l-------~~stv~r~l~~L~~~G~v~~~-~~~~Y~l 63 (249)
T 1mkm_A 8 KKAFEILDFIVKNPGDVSVSEIAEKFN--M-------SVSNAYKYMVVLEEKGFVLRK-KDKRYVP 63 (249)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTT--C-------CHHHHHHHHHHHHHTTSEEEC-TTSCEEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCcEEEC-CCCcEEE
Confidence 344467777754 2 579999998872 2 356788999999999999987 4444443
No 229
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=21.62 E-value=19 Score=23.15 Aligned_cols=6 Identities=83% Similarity=1.847 Sum_probs=2.7
Q ss_pred cccCCC
Q 011237 40 DSDLWD 45 (490)
Q Consensus 40 ~~~~~~ 45 (490)
|||.||
T Consensus 5 dSDiWD 10 (37)
T 3s6n_M 5 DSDIWD 10 (37)
T ss_pred chhhhh
Confidence 344444
No 230
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=21.42 E-value=2e+02 Score=23.92 Aligned_cols=49 Identities=18% Similarity=0.085 Sum_probs=34.4
Q ss_pred HHHHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCccccccccc
Q 011237 414 EAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSLE 471 (490)
Q Consensus 414 ~~~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~ 471 (490)
...|+..+.. +..|..++++.+. + ...++..+|..|+++|.|.+....+
T Consensus 42 ~~~i~~~l~~~~~~~~~~la~~l~--v-------s~~tvs~~l~~Le~~Glv~r~~~~~ 91 (155)
T 2h09_A 42 VELISDLIREVGEARQVDMAARLG--V-------SQPTVAKMLKRLATMGLIEMIPWRG 91 (155)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHT--S-------CHHHHHHHHHHHHHTTCEEEETTTE
T ss_pred HHHHHHHHHhCCCcCHHHHHHHhC--c-------CHHHHHHHHHHHHHCCCEEEecCCc
Confidence 3445555543 5679999988874 2 2456888999999999998765543
No 231
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.30 E-value=1.2e+02 Score=24.24 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=42.3
Q ss_pred HHHHHHHHcC-CCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc-ceeeec
Q 011237 415 AAILQAIENG-VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL-ESFNSS 476 (490)
Q Consensus 415 ~~il~~l~~g-~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~-~~~~~~ 476 (490)
+.|.+.|+.. .++-.+++..+...+. + ......+...++.|.+++.+++...+ ..|.|-
T Consensus 34 AaIVRIMK~rK~l~h~~Lv~eV~~ql~-F--~p~~~~IKk~IE~LIereYleR~~~d~~~y~Yl 94 (101)
T 2do7_A 34 AAIVRIMKMRKTLSHNLLVSEVYNQLK-F--PVKPADLKKRIESLIDRDYMERDKENPNQYNYI 94 (101)
T ss_dssp HHHHHHHHHSSEEEHHHHHHHHHHHCS-S--CCCHHHHHHHHHHHHHTTSEEECSSCTTEEEEC
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHcC-C--CCCHHHHHHHHHHHhhhhHHhcCCCCCCeEEEe
Confidence 4577777653 3477889988887665 1 12334588899999999999998764 567664
No 232
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.15 E-value=64 Score=28.01 Aligned_cols=56 Identities=7% Similarity=-0.026 Sum_probs=37.8
Q ss_pred HHHHHHHc--CCCCHHHHHHHhhcC--CCccchHHHHHHHHHHHHHHHHCCcccccc-ccceeee
Q 011237 416 AILQAIEN--GVETLFDIVANVYSE--VPRSFWIPAASNVRLHVDHLADQNKLPKGF-SLESFNS 475 (490)
Q Consensus 416 ~il~~l~~--g~~T~~ei~~~~~~~--l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~-~~~~~~~ 475 (490)
.|++.+.+ ++.|++||...+-.. .+. +...+|.-.|+.|++.|.|.+.. .++..+|
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~----is~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y 97 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLN----VGIATVYRTLNLLEEAEMVTSISFGSAGKKY 97 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGC----CCHHHHHHHHHHHHHTTSEEECC-----CCE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCC----CCHHHHHHHHHHHHHCCCEEEEEeCCCceEE
Confidence 57777765 466999999988654 221 23457888999999999998764 3444444
No 233
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=20.87 E-value=1.1e+02 Score=25.02 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=34.9
Q ss_pred HHHHHHHHHc-CC--CCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccc
Q 011237 414 EAAILQAIEN-GV--ETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 468 (490)
Q Consensus 414 ~~~il~~l~~-g~--~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 468 (490)
..+|+..+.+ +. .|..||++.+- + ..+++..+|+.|++.|.|.+..
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~--~-------s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLK--L-------DVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHT--S-------CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHC--c-------CHHHHHHHHHHHHHCCCEEeeC
Confidence 3457766653 33 69999999873 2 3567899999999999998764
No 234
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=20.84 E-value=1.2e+02 Score=28.04 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=26.7
Q ss_pred HHHcCCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccc
Q 011237 420 AIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGF 468 (490)
Q Consensus 420 ~l~~g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 468 (490)
.+..|+.|..+|+..+ .+...++..||..|.+.|.|++..
T Consensus 173 ~l~~~~~t~~~la~~~---------~l~~~~V~~~l~~L~~~~~v~~~~ 212 (232)
T 2qlz_A 173 LLLNGRATVEELSDRL---------NLKEREVREKISEMARFVPVKIIN 212 (232)
T ss_dssp HHHSSEEEHHHHHHHH---------TCCHHHHHHHHHHHTTTSCEEEET
T ss_pred HHhcCCCCHHHHHHHh---------CcCHHHHHHHHHHHHhcCCeEEec
Confidence 3444445555555554 123567999999999999998443
No 235
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=20.41 E-value=1.2e+02 Score=26.77 Aligned_cols=47 Identities=9% Similarity=0.077 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCc-ccc
Q 011237 411 RAREAAILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNK-LPK 466 (490)
Q Consensus 411 ~~r~~~il~~l~~--g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~-i~~ 466 (490)
.+|..+|++.+++ ++.|..||++.+- ....++..+++.|++.|. |..
T Consensus 20 ~~R~~~Il~~L~~~~~~~s~~eLa~~l~---------vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 20 QERLKSIVRILERSKEPVSGAQLAEELS---------VSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHT---------SCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHC---------cCHHHHHHHHHHHHHCCCeEEE
Confidence 4566788888874 3479999999872 335679999999999998 654
No 236
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=20.07 E-value=1.1e+02 Score=23.99 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=40.8
Q ss_pred HHHHHHHc-CCCCHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHCCcccccccc-ceeee
Q 011237 416 AILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKGFSL-ESFNS 475 (490)
Q Consensus 416 ~il~~l~~-g~~T~~ei~~~~~~~l~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~-~~~~~ 475 (490)
.|.+.|+. ..++-.+|+..+...+..++.+ ....+...++.|.+++.+.+..++ ..|.|
T Consensus 30 aIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p-~~~~IKk~IE~LIereYleR~~~d~~~y~Y 90 (92)
T 1iuy_A 30 AIVRIMKSRKKMQHNVLVAEVTQQLKARFLP-SPVVIKKRIEGLIEREYLARTPEDRKVYTY 90 (92)
T ss_dssp HHHHHHHHHCEEEHHHHHHHHHHHTCSSCCC-CHHHHHHHHHHHHHTTSEEECSSCSSEEEE
T ss_pred eeeehhhccccccHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhhhhhhhcCCCCCCeeEe
Confidence 45555554 2347788988888766544333 234588899999999999998765 45555
Done!