BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011238
         (490 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1 J-Domain
          Length = 106

 Score =  114 bits (285), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 65/85 (76%)

Query: 399 RLWSAGKETNIRLLLSALHHVLWPNSGWCSVPLTSLIESSHVKKAYQKARLCLHPDKLQQ 458
           R WS+GK  NIR LLS L ++LW  SGW  VPL  +IE + V+K+YQ+A L LHPDKLQQ
Sbjct: 16  RKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQ 75

Query: 459 RGATAQQKYVAEKVFSVLQDAWSAF 483
           +GA+A QKY+AEKVF +LQ+AW  F
Sbjct: 76  KGASANQKYMAEKVFELLQEAWDHF 100


>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
           Binding Domain Of Bovine Auxilin
          Length = 182

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 50/86 (58%), Gaps = 9/86 (10%)

Query: 401 WSAGKETNIRLLLSALHHVLWPN-SGWCSVPLTSLIESSHVKKAYQKARLCLHPDKLQQR 459
           W  GKE NIR LLS +H VLW   + W  V +  L+    VKK Y+KA L +HPDK    
Sbjct: 94  WIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDK---- 149

Query: 460 GATAQ--QKYVAEKVFSVLQDAWSAF 483
            AT Q  ++Y A+ +F  L DAWS F
Sbjct: 150 -ATGQPYEQY-AKMIFMELNDAWSEF 173


>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
          Length = 114

 Score = 65.5 bits (158), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/86 (46%), Positives = 50/86 (58%), Gaps = 9/86 (10%)

Query: 401 WSAGKETNIRLLLSALHHVLWP-NSGWCSVPLTSLIESSHVKKAYQKARLCLHPDKLQQR 459
           W  GKE NIR LLS +H VLW   + W  V +  L+    VKK Y+KA L +HPDK    
Sbjct: 26  WIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDK---- 81

Query: 460 GATAQ--QKYVAEKVFSVLQDAWSAF 483
            AT Q  ++Y A+ +F  L DAWS F
Sbjct: 82  -ATGQPYEQY-AKMIFMELNDAWSEF 105


>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
           Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
           (810-910aa)d876c In The AdpPi State
          Length = 94

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 49/86 (56%), Gaps = 9/86 (10%)

Query: 401 WSAGKETNIRLLLSALHHVLWP-NSGWCSVPLTSLIESSHVKKAYQKARLCLHPDKLQQR 459
           W  GKE NIR LLS +H VLW   + W  V +  L+    VKK Y+KA L +HP K    
Sbjct: 11  WIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCK---- 66

Query: 460 GATAQ--QKYVAEKVFSVLQDAWSAF 483
            AT Q  ++Y A+ +F  L DAWS F
Sbjct: 67  -ATGQPYEQY-AKMIFMELNDAWSEF 90


>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
 pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
          Length = 101

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/86 (46%), Positives = 48/86 (55%), Gaps = 9/86 (10%)

Query: 401 WSAGKETNIRLLLSALHHVLWP-NSGWCSVPLTSLIESSHVKKAYQKARLCLHPDKLQQR 459
           W  GKE NIR LLS  H VLW   + W  V    L+    VKK Y+KA L +HPDK    
Sbjct: 13  WIEGKERNIRALLSTXHTVLWAGETKWKPVGXADLVTPEQVKKVYRKAVLVVHPDK---- 68

Query: 460 GATAQ--QKYVAEKVFSVLQDAWSAF 483
            AT Q  ++Y A+ +F  L DAWS F
Sbjct: 69  -ATGQPYEQY-AKXIFXELNDAWSEF 92


>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
           Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
           (810-910aa)d876c In The AdpPi Form #1
 pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
           Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
           (810-910aa)d876c In The AdpPi Form #2
 pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
           Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
           (810-910aa)d876c In The Amppnp Hydrolyzed Form
 pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
           Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
           (810-910aa)d876c In The Amppnp Intact Form
          Length = 92

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 49/86 (56%), Gaps = 9/86 (10%)

Query: 401 WSAGKETNIRLLLSALHHVLWP-NSGWCSVPLTSLIESSHVKKAYQKARLCLHPDKLQQR 459
           W  GKE NIR LLS +H VLW   + W  V +  L+    VKK Y+KA L +HP K    
Sbjct: 10  WIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCK---- 65

Query: 460 GATAQ--QKYVAEKVFSVLQDAWSAF 483
            AT Q  ++Y A+ +F  L DAWS F
Sbjct: 66  -ATGQPYEQY-AKMIFMELNDAWSEF 89


>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
          Length = 77

 Score = 30.4 bits (67), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 440 VKKAYQKARLCLHPDKLQQRGATAQQKYVAEKVFSVLQD 478
           +K+AY++  L  HPDK ++ GA  + K +AE  + VL D
Sbjct: 20  IKRAYRRQALRYHPDKNKEPGAEEKFKEIAE-AYDVLSD 57


>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
           Hcg3, A Hypothetical Protein Tmp_locus_21
          Length = 82

 Score = 30.0 bits (66), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 437 SSHVKKAYQKARLCLHPDKLQQRGATAQQKY--VAEKVFSVLQDA 479
           S  +KKAY+K  L  HPDK  +    A++++  VAE  + VL DA
Sbjct: 23  SEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAE-AYEVLSDA 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.129    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,629,150
Number of Sequences: 62578
Number of extensions: 500341
Number of successful extensions: 817
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 805
Number of HSP's gapped (non-prelim): 14
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)