BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011239
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 234 SCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPS-DEWF 275
+C +CG + K L+CD+C+ AFH+ C P + VPS DEW+
Sbjct: 192 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWY 234
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 234 SCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPS-DEWF 275
+C +CG + K L+CD+C+ AFH+ C P + VPS DEW+
Sbjct: 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWY 218
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 234 SCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPS-DEWF 275
+C +CG + K L+CD+C+ AFH+ C P + VPS DEW+
Sbjct: 7 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWY 49
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 234 SCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPS-DEWF 275
+C +CG + K L+CD+C+ AFH+ C P + VPS DEW+
Sbjct: 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWY 70
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 235 CKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEW 274
CK+C + KL+LCD+C +AFH+ C P + VP EW
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEW 42
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 234 SCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPS-DEWF 275
+C +CG + K L+CD+C+ AFH+ C P + VPS DEW+
Sbjct: 22 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWY 64
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 234 SCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPS-DEWF 275
+C +CG + K L+CD+C+ AFH+ C P + VPS DEW+
Sbjct: 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWY 62
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 234 SCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPS-DEWF 275
+C +CG + K L+CD+C+ AFH+ C P + VPS DEW+
Sbjct: 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWY 62
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 234 SCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPS-DEWF 275
+C +CG + K L+CD+C+ AFH+ C P + VPS DEW+
Sbjct: 25 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWY 67
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing N-Terminal Acetylation
At Serine 1
Length = 114
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 233 RSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEW 274
+SC +CG SE +LL CDDC+ +H+ C P + P W
Sbjct: 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSW 100
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWF 275
S SC++CG LLCD+C A+H+ C P + VP +E++
Sbjct: 26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYW 69
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 230 ICSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEW 274
I S C++C R + KLL CD C++ +H+ C P + +P W
Sbjct: 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIW 58
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 233 RSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEW 274
+ C+ C +S K+L+CD C++ +H C P +K VP++ W
Sbjct: 55 KVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGW 96
>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
Finger-Bromodomain
Length = 189
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 234 SCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEW 274
S IC + L++C+ CE FH+ C+ P ++ VP +EW
Sbjct: 1 SATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEW 41
>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
Corepressor
Length = 88
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 237 ICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEW 274
IC + L++C+ CE FH+ C+ P ++ VP +EW
Sbjct: 27 ICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEW 64
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 246 KLLLCDDCEEAFHVTCYTPRIKIVPSDEW 274
+L+ CD C AFH+ C +P ++ +PS W
Sbjct: 19 ELICCDGCPRAFHLACLSPPLREIPSGTW 47
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 238 CGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEW 274
C + +LL C+ C + FH++C+ P + PS EW
Sbjct: 7 CAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEW 43
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 246 KLLLCDDCEEAFHVTCYTPRIKIVPSDEW 274
+L+ CD C AFH+ C +P ++ +PS W
Sbjct: 16 ELICCDGCPRAFHLACLSPPLREIPSGTW 44
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 238 CGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEW 274
C + LL C+ C + FH+TC+ P + PS +W
Sbjct: 10 CAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDW 46
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 235 CKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWF 275
C +C +S +LL+CD C +H+ C P +K +P W
Sbjct: 12 CSVCRKSG---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWI 49
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 235 CKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWF 275
C++C + +LL CD C ++H+ C P + +P+ EW
Sbjct: 12 CRVC---KDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWL 49
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 235 CKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWF 275
C +C +S +LL+CD C +H+ C P +K +P W
Sbjct: 8 CSVCRKSG---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWI 45
>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
Element-Binding Transcription Factor 2
Length = 66
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 225 TGCSGICSRSCKICGR--SETALKLLLCDDCEEAFHVTCYTPRI--KIVPSDE-WF 275
+G SG+C+ IC SE ++++CD C + +H C+TP I ++ SDE W
Sbjct: 3 SGSSGVCT----ICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWL 54
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 235 CKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEW 274
C++C + +LL CD C ++H+ C P + VP EW
Sbjct: 12 CRVC---KDGGELLCCDTCPSSYHIHCLRPALYEVPDGEW 48
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 235 CKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEW 274
C++C + +++LCD C A+H+ C P ++ P +W
Sbjct: 14 CEVC---QQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKW 50
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 235 CKICG----RSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWF 275
CK C + + A +L CD C+ FH+ C P + +P W
Sbjct: 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWI 105
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 235 CKICG----RSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWF 275
CK C + + A +L CD C+ FH+ C P + +P W
Sbjct: 59 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWI 103
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 235 CKIC--GRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWF 275
C IC G S+ + +L CD C A H CY + +P +W
Sbjct: 19 CSICMDGESQNSNVILFCDMCNLAVHQECYG--VPYIPEGQWL 59
>pdb|2L7P|A Chain A, Ashh2 A Cw Domain
Length = 100
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 404 CGKWRRAPLFEVQTDD----WECFCAVQWDPTHADCAVPQELETDEVSKQL 450
C KWRR P V + D W C D ADC+ QE+ +E++++L
Sbjct: 34 CFKWRRIPASVVGSIDESSRW--ICMNNSDKRFADCSKSQEMSNEEINEEL 82
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 235 CKIC--GRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWF 275
C IC G S+ + +L CD C A H CY + +P +W
Sbjct: 28 CSICMDGESQNSNVILFCDMCNLAVHQECYG--VPYIPEGQWL 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,699,505
Number of Sequences: 62578
Number of extensions: 471076
Number of successful extensions: 652
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 33
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)