Query 011239
Match_columns 490
No_of_seqs 299 out of 1131
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:02:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011239.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011239hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o36_A Transcription intermedi 99.7 3.4E-18 1.1E-22 159.8 1.5 123 231-363 3-126 (184)
2 3u5n_A E3 ubiquitin-protein li 99.7 3.4E-18 1.2E-22 162.9 0.9 119 232-363 7-126 (207)
3 2ro1_A Transcription intermedi 99.6 5.4E-17 1.9E-21 153.2 2.0 116 232-363 2-120 (189)
4 2ysm_A Myeloid/lymphoid or mix 99.6 2.5E-15 8.7E-20 130.0 6.7 95 179-283 11-105 (111)
5 2kwj_A Zinc finger protein DPF 99.5 4.1E-16 1.4E-20 136.3 0.1 92 185-283 18-109 (114)
6 3v43_A Histone acetyltransfera 99.5 1.2E-15 4E-20 132.9 1.5 90 185-281 21-111 (112)
7 3asl_A E3 ubiquitin-protein li 99.5 2.9E-14 1E-18 115.0 5.0 57 223-281 11-68 (70)
8 3shb_A E3 ubiquitin-protein li 99.5 3.1E-14 1.1E-18 117.1 4.7 57 223-281 19-76 (77)
9 2e6s_A E3 ubiquitin-protein li 99.4 7.6E-14 2.6E-18 114.7 5.2 57 223-281 19-76 (77)
10 1f62_A Transcription factor WS 99.4 6.2E-14 2.1E-18 105.7 3.1 49 234-282 2-50 (51)
11 2l7p_A Histone-lysine N-methyl 99.4 8.1E-14 2.8E-18 119.8 4.2 58 380-452 23-84 (100)
12 1mm2_A MI2-beta; PHD, zinc fin 99.4 2.2E-13 7.5E-18 107.0 4.8 49 232-283 9-57 (61)
13 2e6r_A Jumonji/ARID domain-con 99.4 1.4E-13 4.7E-18 116.5 3.6 60 223-283 8-67 (92)
14 1fp0_A KAP-1 corepressor; PHD 99.4 4.7E-13 1.6E-17 112.7 6.4 49 231-282 24-72 (88)
15 1xwh_A Autoimmune regulator; P 99.4 2.6E-13 8.8E-18 108.0 3.4 50 231-283 7-56 (66)
16 2yql_A PHD finger protein 21A; 99.3 4E-13 1.4E-17 103.5 3.9 47 232-281 9-55 (56)
17 1wev_A Riken cDNA 1110020M19; 99.3 3.1E-13 1.1E-17 113.4 3.5 57 229-285 13-75 (88)
18 2lri_C Autoimmune regulator; Z 99.3 3.5E-13 1.2E-17 107.7 3.2 48 232-282 12-59 (66)
19 2puy_A PHD finger protein 21A; 99.3 3.7E-13 1.3E-17 105.0 2.5 49 232-283 5-53 (60)
20 2l5u_A Chromodomain-helicase-D 99.3 8.2E-13 2.8E-17 103.7 4.1 48 232-282 11-58 (61)
21 3ask_A E3 ubiquitin-protein li 99.3 1.6E-12 5.6E-17 126.1 4.8 58 222-281 166-224 (226)
22 2yt5_A Metal-response element- 99.3 1.1E-12 3.7E-17 103.7 2.3 53 231-283 5-62 (66)
23 2e61_A Zinc finger CW-type PWW 99.2 6.8E-12 2.3E-16 101.3 3.7 53 379-444 12-67 (69)
24 2ku3_A Bromodomain-containing 99.2 5.2E-12 1.8E-16 102.3 1.6 50 232-283 16-67 (71)
25 2l43_A N-teminal domain from h 99.1 1.4E-11 4.8E-16 103.4 2.6 51 231-283 24-76 (88)
26 2k16_A Transcription initiatio 99.0 9.4E-11 3.2E-15 94.8 3.1 54 232-285 18-71 (75)
27 2ri7_A Nucleosome-remodeling f 98.9 1.7E-11 5.7E-16 113.1 -5.9 108 232-363 8-118 (174)
28 4gne_A Histone-lysine N-methyl 98.8 1.6E-09 5.6E-14 94.1 3.7 47 231-282 14-62 (107)
29 1wen_A Inhibitor of growth fam 98.7 8.9E-09 3E-13 83.2 4.9 49 231-283 15-66 (71)
30 2vnf_A ING 4, P29ING4, inhibit 98.7 6.6E-09 2.2E-13 81.3 2.4 47 232-282 10-59 (60)
31 2ysm_A Myeloid/lymphoid or mix 98.7 1.2E-08 4.1E-13 88.0 4.2 50 231-280 6-55 (111)
32 3c6w_A P28ING5, inhibitor of g 98.6 8.4E-09 2.9E-13 80.5 2.5 47 232-282 9-58 (59)
33 2lbm_A Transcriptional regulat 98.6 3.6E-09 1.2E-13 96.2 0.5 49 232-283 63-118 (142)
34 2lv9_A Histone-lysine N-methyl 98.6 2.3E-08 7.8E-13 85.2 5.0 49 233-283 29-77 (98)
35 1weu_A Inhibitor of growth fam 98.6 4E-08 1.4E-12 83.2 4.8 49 231-283 35-86 (91)
36 2g6q_A Inhibitor of growth pro 98.5 2.3E-08 7.9E-13 78.8 2.6 48 231-282 10-60 (62)
37 2jmi_A Protein YNG1, ING1 homo 98.5 2.8E-08 9.6E-13 83.9 2.5 47 232-282 26-76 (90)
38 3ql9_A Transcriptional regulat 98.4 2.3E-08 7.8E-13 89.6 -1.5 49 232-283 57-112 (129)
39 4gne_A Histone-lysine N-methyl 98.3 3.3E-07 1.1E-11 79.7 4.8 74 186-276 23-98 (107)
40 1x4i_A Inhibitor of growth pro 98.3 2.2E-07 7.4E-12 74.9 1.5 48 232-283 6-56 (70)
41 3o70_A PHD finger protein 13; 98.0 2.6E-06 8.9E-11 68.2 3.7 49 232-282 19-67 (68)
42 2kwj_A Zinc finger protein DPF 98.0 8.5E-07 2.9E-11 77.2 0.4 48 233-280 2-59 (114)
43 1we9_A PHD finger family prote 98.0 3.3E-06 1.1E-10 66.0 3.4 52 232-283 6-59 (64)
44 2xb1_A Pygopus homolog 2, B-ce 97.9 3.2E-06 1.1E-10 72.9 1.9 50 234-285 5-64 (105)
45 1wew_A DNA-binding family prot 97.9 5.8E-06 2E-10 67.4 2.8 50 231-283 15-73 (78)
46 1wep_A PHF8; structural genomi 97.8 4.9E-06 1.7E-10 67.9 2.1 49 233-284 13-65 (79)
47 1wee_A PHD finger family prote 97.8 9.4E-06 3.2E-10 65.1 2.9 50 233-283 17-67 (72)
48 3v43_A Histone acetyltransfera 97.8 2.7E-06 9.1E-11 73.8 -0.5 50 232-281 5-63 (112)
49 1wem_A Death associated transc 97.8 3.3E-06 1.1E-10 68.3 -0.2 48 233-283 17-71 (76)
50 2rsd_A E3 SUMO-protein ligase 97.7 1.4E-05 4.8E-10 63.6 2.7 48 232-282 10-65 (68)
51 2vpb_A Hpygo1, pygopus homolog 97.7 7E-06 2.4E-10 65.2 0.7 46 233-280 9-64 (65)
52 3o7a_A PHD finger protein 13 v 97.6 4.3E-05 1.5E-09 57.7 3.3 44 237-281 8-51 (52)
53 3kqi_A GRC5, PHD finger protei 97.4 3.4E-05 1.2E-09 62.4 1.5 49 233-284 11-63 (75)
54 2kgg_A Histone demethylase jar 97.4 4.1E-05 1.4E-09 57.8 1.0 45 234-280 4-52 (52)
55 1wil_A KIAA1045 protein; ring 97.1 7.2E-05 2.5E-09 62.5 0.3 50 232-282 15-76 (89)
56 3lqh_A Histone-lysine N-methyl 96.8 0.0003 1E-08 66.3 1.6 50 233-284 3-65 (183)
57 3kv5_D JMJC domain-containing 96.8 0.00032 1.1E-08 74.9 1.9 51 233-286 38-92 (488)
58 4bbq_A Lysine-specific demethy 96.6 0.002 6.9E-08 55.4 5.2 49 235-283 62-115 (117)
59 3pur_A Lysine-specific demethy 96.2 0.0015 5.1E-08 70.3 2.4 38 245-284 56-96 (528)
60 3kv4_A PHD finger protein 8; e 95.2 0.0018 6E-08 68.6 -2.1 49 234-285 7-59 (447)
61 2e6r_A Jumonji/ARID domain-con 91.3 0.15 5.2E-06 42.6 3.7 44 179-231 20-63 (92)
62 2yyn_A Transcription intermedi 90.2 0.014 4.8E-07 51.8 -3.8 50 311-363 15-65 (135)
63 2ku7_A MLL1 PHD3-CYP33 RRM chi 88.8 0.11 3.6E-06 44.3 0.8 38 246-283 1-45 (140)
64 4ap4_A E3 ubiquitin ligase RNF 88.8 0.014 4.7E-07 49.6 -4.9 104 171-283 6-123 (133)
65 1fp0_A KAP-1 corepressor; PHD 88.4 0.34 1.2E-05 40.5 3.6 42 181-231 28-69 (88)
66 3a1b_A DNA (cytosine-5)-methyl 87.8 0.1 3.5E-06 48.2 0.0 49 232-283 79-135 (159)
67 2lri_C Autoimmune regulator; Z 85.0 0.35 1.2E-05 38.2 1.7 41 179-231 16-56 (66)
68 2ro1_A Transcription intermedi 84.8 0.5 1.7E-05 44.1 3.1 44 179-231 3-46 (189)
69 1f62_A Transcription factor WS 84.7 0.31 1.1E-05 35.9 1.3 44 179-231 4-47 (51)
70 1mm2_A MI2-beta; PHD, zinc fin 84.4 0.67 2.3E-05 35.7 3.1 37 186-231 17-53 (61)
71 2ku3_A Bromodomain-containing 84.3 0.29 1E-05 39.1 1.0 53 165-231 9-63 (71)
72 3g0l_A Hwalp4, bromodomain adj 83.9 0.074 2.5E-06 45.7 -2.9 49 313-363 10-59 (117)
73 2l5u_A Chromodomain-helicase-D 83.9 0.46 1.6E-05 36.6 1.9 37 186-231 19-55 (61)
74 2e6s_A E3 ubiquitin-protein li 83.2 0.65 2.2E-05 37.6 2.7 52 171-231 20-74 (77)
75 2d9e_A Peregrin; four-helix bu 82.1 0.1 3.5E-06 45.4 -2.7 49 313-363 5-53 (121)
76 3rsn_A SET1/ASH2 histone methy 81.9 1 3.6E-05 42.1 3.9 46 237-282 9-59 (177)
77 2pv0_B DNA (cytosine-5)-methyl 81.7 0.18 6.1E-06 52.5 -1.5 49 232-283 93-149 (386)
78 2yql_A PHD finger protein 21A; 81.1 0.86 3E-05 34.3 2.5 36 187-231 18-53 (56)
79 3shb_A E3 ubiquitin-protein li 79.9 0.79 2.7E-05 37.2 2.1 52 171-231 20-74 (77)
80 3asl_A E3 ubiquitin-protein li 79.9 0.77 2.6E-05 36.4 2.0 52 171-231 12-66 (70)
81 3u5n_A E3 ubiquitin-protein li 79.2 0.84 2.9E-05 42.9 2.3 41 182-231 11-51 (207)
82 1xwh_A Autoimmune regulator; P 78.4 0.91 3.1E-05 35.3 1.9 37 186-231 16-52 (66)
83 3o36_A Transcription intermedi 76.3 1.3 4.3E-05 40.7 2.6 38 185-231 11-48 (184)
84 3hme_A Bromodomain-containing 75.2 0.19 6.7E-06 43.7 -3.1 49 313-363 11-59 (123)
85 3nxb_A CAT eye syndrome critic 74.6 0.15 5.1E-06 43.7 -3.9 39 323-363 24-62 (116)
86 4gut_A Lysine-specific histone 74.6 0.41 1.4E-05 53.6 -1.5 53 383-446 91-150 (776)
87 2puy_A PHD finger protein 21A; 74.4 1.4 4.7E-05 33.6 1.9 36 187-231 14-49 (60)
88 2l43_A N-teminal domain from h 74.0 0.76 2.6E-05 38.0 0.4 47 171-231 24-72 (88)
89 3ask_A E3 ubiquitin-protein li 72.3 1.7 5.7E-05 42.2 2.4 50 173-231 170-222 (226)
90 3fkm_X Signaling protein; brom 71.9 0.35 1.2E-05 44.3 -2.4 41 323-363 29-69 (166)
91 3rcw_A Bromodomain-containing 69.6 0.33 1.1E-05 42.7 -2.9 49 313-363 11-59 (135)
92 2i7k_A Bromodomain-containing 68.7 0.16 5.5E-06 44.0 -5.1 32 330-363 23-54 (117)
93 1iym_A EL5; ring-H2 finger, ub 68.4 2.3 7.7E-05 30.6 1.9 46 233-282 6-52 (55)
94 1wev_A Riken cDNA 1110020M19; 67.3 1.7 5.9E-05 35.8 1.1 49 171-231 15-69 (88)
95 2ect_A Ring finger protein 126 66.6 2.1 7.3E-05 33.1 1.5 37 168-207 11-47 (78)
96 4alg_A Bromodomain-containing 65.7 0.39 1.3E-05 43.5 -3.4 41 323-363 40-80 (154)
97 2lv9_A Histone-lysine N-methyl 65.1 3.9 0.00013 34.2 2.9 50 168-231 24-73 (98)
98 2oss_A HUNK1 protein, bromodom 63.6 0.57 1.9E-05 41.0 -2.7 41 323-363 29-69 (127)
99 2ecl_A Ring-box protein 2; RNF 63.5 2.8 9.4E-05 33.3 1.6 32 247-282 42-73 (81)
100 4bbq_A Lysine-specific demethy 62.7 1.6 5.6E-05 37.0 0.1 37 233-283 8-44 (117)
101 2d8s_A Cellular modulator of i 62.5 1.4 4.8E-05 35.6 -0.3 50 232-283 15-68 (80)
102 2k16_A Transcription initiatio 62.4 2.7 9.2E-05 33.1 1.4 44 179-231 22-65 (75)
103 1iym_A EL5; ring-H2 finger, ub 62.1 2.6 8.8E-05 30.3 1.1 35 170-207 3-38 (55)
104 3d7c_A General control of amin 60.8 0.93 3.2E-05 38.5 -1.8 34 328-363 20-53 (112)
105 3q2e_A Bromodomain and WD repe 60.4 0.38 1.3E-05 41.7 -4.3 38 324-363 19-56 (123)
106 1x4j_A Ring finger protein 38; 60.3 1.2 4.2E-05 34.4 -1.0 47 232-282 23-69 (75)
107 3mb4_A Protein polybromo-1; PB 60.2 0.64 2.2E-05 40.3 -3.0 33 329-363 35-67 (124)
108 1x4j_A Ring finger protein 38; 59.8 2.5 8.5E-05 32.6 0.7 35 170-207 21-55 (75)
109 2dat_A Possible global transcr 59.4 0.86 2.9E-05 39.5 -2.3 32 330-363 34-65 (123)
110 2lq6_A Bromodomain-containing 59.4 4.5 0.00015 33.4 2.2 36 220-263 10-49 (87)
111 1vyx_A ORF K3, K3RING; zinc-bi 59.4 1 3.6E-05 34.5 -1.5 50 232-283 6-57 (60)
112 2ect_A Ring finger protein 126 58.9 3.8 0.00013 31.6 1.6 47 233-283 16-62 (78)
113 2kiz_A E3 ubiquitin-protein li 58.6 1.5 5.3E-05 33.1 -0.7 48 232-283 14-61 (69)
114 2ct0_A Non-SMC element 1 homol 58.3 3.1 0.00011 33.4 1.1 47 232-282 15-61 (74)
115 3k2j_A Protein polybromo-1; PB 58.1 0.83 2.8E-05 40.2 -2.6 33 329-363 37-69 (130)
116 1e6i_A Transcriptional activat 58.1 1.1 3.8E-05 38.7 -1.7 36 326-363 24-59 (121)
117 2yt5_A Metal-response element- 57.8 2.5 8.6E-05 32.4 0.4 44 179-231 10-58 (66)
118 3uv4_A Second bromodomain of h 57.8 1.2 4.1E-05 40.5 -1.7 32 330-363 45-76 (158)
119 3mqm_A Probable histone-lysine 57.7 1 3.5E-05 39.1 -2.1 33 329-363 29-61 (126)
120 3ljw_A Protein polybromo-1; al 57.3 0.86 2.9E-05 39.3 -2.6 33 329-363 28-60 (120)
121 2l0b_A E3 ubiquitin-protein li 56.7 2.1 7.3E-05 34.6 -0.2 47 232-282 40-86 (91)
122 2dkw_A Hypothetical protein KI 56.4 2.7 9.1E-05 37.0 0.4 28 329-363 26-53 (131)
123 3mb3_A PH-interacting protein; 56.1 0.63 2.2E-05 40.9 -3.7 39 323-363 29-67 (135)
124 3jvl_A Bromodomain-containing 55.6 0.26 8.9E-06 42.4 -6.2 31 333-363 30-60 (120)
125 3dai_A ATPase family AAA domai 55.2 1.3 4.3E-05 38.8 -1.9 33 329-363 24-56 (130)
126 2grc_A Probable global transcr 55.1 0.89 3.1E-05 39.7 -2.9 33 329-363 32-64 (129)
127 2ysj_A Tripartite motif-contai 53.7 4.7 0.00016 29.8 1.3 40 162-207 10-49 (63)
128 1v87_A Deltex protein 2; ring- 53.4 2.5 8.5E-05 35.1 -0.3 34 250-283 58-92 (114)
129 2kiz_A E3 ubiquitin-protein li 52.0 2.5 8.5E-05 31.9 -0.5 38 167-207 9-46 (69)
130 2ecm_A Ring finger and CHY zin 51.6 2.8 9.7E-05 30.0 -0.2 46 233-282 6-52 (55)
131 2ep4_A Ring finger protein 24; 50.9 2.1 7.2E-05 32.8 -1.1 46 233-282 16-61 (74)
132 2ouo_A HUNK1 protein, bromodom 50.7 2.3 7.7E-05 37.2 -1.0 31 333-363 43-73 (130)
133 3p1f_A CREB-binding protein; s 50.7 1.2 4E-05 38.2 -2.8 33 331-363 28-60 (119)
134 2ysl_A Tripartite motif-contai 49.0 5.2 0.00018 30.3 0.9 41 161-207 9-49 (73)
135 3iu5_A Protein polybromo-1; PB 48.1 0.94 3.2E-05 38.7 -3.8 31 331-363 27-57 (116)
136 2ep4_A Ring finger protein 24; 45.2 3.6 0.00012 31.4 -0.5 37 168-207 11-47 (74)
137 3k1l_B Fancl; UBC, ring, RWD, 44.3 6.8 0.00023 40.5 1.2 50 233-282 309-370 (381)
138 3tlp_A Protein polybromo-1; PB 43.2 1.8 6.2E-05 38.5 -2.9 33 329-363 45-77 (150)
139 2l0b_A E3 ubiquitin-protein li 40.6 4.4 0.00015 32.7 -0.7 35 170-207 38-72 (91)
140 4a0k_B E3 ubiquitin-protein li 37.6 7.1 0.00024 33.9 0.1 28 251-282 82-109 (117)
141 3dpl_R Ring-box protein 1; ubi 36.9 7.5 0.00026 32.9 0.1 31 248-282 68-98 (106)
142 2r10_A Chromatin structure-rem 36.8 3.9 0.00013 41.7 -2.0 33 329-363 227-259 (361)
143 3uv5_A Transcription initiatio 36.7 4.2 0.00014 39.5 -1.7 39 323-363 22-60 (265)
144 3uv5_A Transcription initiatio 35.6 5 0.00017 38.9 -1.4 32 330-363 152-183 (265)
145 2ecm_A Ring finger and CHY zin 35.5 6.2 0.00021 28.1 -0.6 34 171-207 4-38 (55)
146 2r0y_A Chromatin structure-rem 34.5 3.5 0.00012 41.3 -2.7 33 329-363 177-209 (311)
147 3aad_A Transcription initiatio 33.7 5.3 0.00018 39.5 -1.5 36 326-363 58-93 (292)
148 2ecl_A Ring-box protein 2; RNF 33.3 8.8 0.0003 30.3 -0.0 18 190-207 42-59 (81)
149 2d8t_A Dactylidin, ring finger 33.3 15 0.00051 27.8 1.3 44 233-283 16-59 (71)
150 3aad_A Transcription initiatio 33.3 5.4 0.00018 39.4 -1.6 32 330-363 185-216 (292)
151 1weq_A PHD finger protein 7; s 33.1 26 0.00089 29.0 2.8 35 245-282 44-79 (85)
152 2egp_A Tripartite motif-contai 32.8 24 0.00083 26.8 2.5 48 233-283 13-63 (79)
153 1wen_A Inhibitor of growth fam 32.6 37 0.0012 26.8 3.5 33 188-231 27-62 (71)
154 2ecy_A TNF receptor-associated 32.3 8.7 0.0003 28.7 -0.2 44 233-282 16-59 (66)
155 6rxn_A Rubredoxin; electron tr 32.0 31 0.0011 25.3 2.8 18 265-283 23-40 (46)
156 1e4u_A Transcriptional repress 31.1 17 0.00059 28.8 1.4 36 169-207 8-44 (78)
157 3l11_A E3 ubiquitin-protein li 30.9 21 0.00072 29.5 1.9 46 232-283 15-60 (115)
158 2d8s_A Cellular modulator of i 30.2 10 0.00035 30.4 -0.2 33 171-207 14-51 (80)
159 2ct0_A Non-SMC element 1 homol 29.4 17 0.00059 29.0 1.1 36 167-207 10-45 (74)
160 1wim_A KIAA0161 protein; ring 29.2 9.6 0.00033 30.7 -0.5 34 171-207 4-37 (94)
161 2r10_A Chromatin structure-rem 27.9 8.5 0.00029 39.2 -1.3 32 332-365 97-128 (361)
162 2d8t_A Dactylidin, ring finger 27.1 17 0.00059 27.4 0.7 33 169-207 12-44 (71)
163 4cpa_I Metallocarboxypeptidase 26.8 36 0.0012 24.0 2.1 26 257-282 4-30 (38)
164 2ea6_A Ring finger protein 4; 25.7 5.9 0.0002 29.4 -2.2 38 167-207 10-51 (69)
165 2ri7_A Nucleosome-remodeling f 25.4 23 0.00078 31.8 1.3 62 381-458 19-86 (174)
166 3nw0_A Non-structural maintena 25.4 21 0.00073 34.3 1.1 47 232-282 180-226 (238)
167 3lrq_A E3 ubiquitin-protein li 25.2 12 0.00041 30.6 -0.6 46 233-283 23-68 (100)
168 2ecj_A Tripartite motif-contai 24.8 25 0.00087 25.0 1.2 35 167-207 10-44 (58)
169 1weu_A Inhibitor of growth fam 24.6 72 0.0025 26.5 4.1 33 188-231 47-82 (91)
170 2ckl_B Ubiquitin ligase protei 24.5 16 0.00054 32.3 0.0 47 232-283 54-100 (165)
171 2ecn_A Ring finger protein 141 24.5 21 0.00072 26.7 0.7 32 169-207 12-43 (70)
172 2k1p_A Zinc finger RAN-binding 23.3 28 0.00095 23.6 1.1 14 270-283 3-16 (33)
173 1pft_A TFIIB, PFTFIIBN; N-term 23.3 70 0.0024 22.9 3.4 25 234-258 7-35 (50)
174 2jmi_A Protein YNG1, ING1 homo 23.0 41 0.0014 27.9 2.2 39 180-230 30-71 (90)
175 2kn9_A Rubredoxin; metalloprot 21.7 82 0.0028 25.8 3.8 17 266-283 54-70 (81)
176 2r0y_A Chromatin structure-rem 21.5 8.5 0.00029 38.5 -2.7 32 331-364 46-77 (311)
177 2lbm_A Transcriptional regulat 21.5 15 0.00052 33.0 -0.7 48 180-231 65-114 (142)
178 1e8j_A Rubredoxin; iron-sulfur 21.2 78 0.0027 23.6 3.3 17 266-283 30-46 (52)
179 2lk0_A RNA-binding protein 5; 21.1 24 0.00082 23.8 0.4 13 271-283 3-15 (32)
180 1jm7_A BRCA1, breast cancer ty 21.0 20 0.00068 29.2 -0.1 46 233-282 22-67 (112)
181 4rxn_A Rubredoxin; electron tr 20.9 58 0.002 24.7 2.5 17 266-283 30-46 (54)
182 3fl2_A E3 ubiquitin-protein li 20.7 13 0.00046 31.2 -1.2 45 233-283 53-97 (124)
No 1
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.69 E-value=3.4e-18 Score=159.84 Aligned_cols=123 Identities=22% Similarity=0.496 Sum_probs=91.4
Q ss_pred ccccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccccccccccccCCCCcccccccCCCCCCC
Q 011239 231 CSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKKHKTLKATARKSPNIISEKGRGRNASAK 310 (490)
Q Consensus 231 c~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~~~~~k~~~~k~p~l~~e~~~~r~as~~ 310 (490)
++++|.+|+++| .||+||.|+++||++|+.|+|..+|.|+|+|+.|+........... ..+...++ .+.....
T Consensus 3 ~~~~C~~C~~~g---~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~~~~e~dc-~~~~~~s~---~~~~~~~ 75 (184)
T 3o36_A 3 NEDWCAVCQNGG---ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDC-DAPSHNSE---KKKTEGL 75 (184)
T ss_dssp SCSSCTTTCCCS---SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSSCSSCCGG-GCCSSCTT---TSCCTTC
T ss_pred CCCccccCCCCC---eeeecCCCCcccCccccCCCCCCCCCCCEECccccCcccccccccc-cccccccc---ccccccc
Confidence 357899999988 7999999999999999999999999999999999976532111000 01111111 1222334
Q ss_pred CCCChhhhhccc-CCCceeeeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 311 GEPSPIELMLTS-TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 311 ~~mnpie~~L~e-~~~y~~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
.+|.+..++.++ ++..+...+.+..|..+|.. ..++|+++|++||||.+-
T Consensus 76 ~~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI 126 (184)
T 3o36_A 76 VKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTI 126 (184)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT---TSTTHHHHCSSCCCHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhchhhhhhcccccc---CCCchhhhcCCCCCHHHH
Confidence 568888887777 66666677778899999985 578999999999999874
No 2
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.68 E-value=3.4e-18 Score=162.85 Aligned_cols=119 Identities=23% Similarity=0.523 Sum_probs=89.6
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccccccccccccCCCCcccccccCCCCCCCC
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKKHKTLKATARKSPNIISEKGRGRNASAKG 311 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~~~~~k~~~~k~p~l~~e~~~~r~as~~~ 311 (490)
+++|.+|+++| .||+||.|+++||+.|+.|+|..+|.|+|+|+.|+........ ..-++.... .......
T Consensus 7 ~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~~~~---~~c~~~~~s----~k~~~~~ 76 (207)
T 3u5n_A 7 EDWCAVCQNGG---DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVE---YDCDNLQHS----KKGKTAQ 76 (207)
T ss_dssp CSSBTTTCCCE---EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSSCSSC---CSCC--------------CC
T ss_pred CCCCCCCCCCC---ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccccccc---cccccccch----hhhhhhh
Confidence 57899999988 7999999999999999999999999999999999976533211 000111110 1112346
Q ss_pred CCChhhhhccc-CCCceeeeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 312 EPSPIELMLTS-TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 312 ~mnpie~~L~e-~~~y~~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
+|++..++.++ ++..+...+.+..|..+|+. ..++|+++|++||+|.+-
T Consensus 77 ~ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI 126 (207)
T 3u5n_A 77 GLSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTV 126 (207)
T ss_dssp SSCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHH
T ss_pred cccHHHHHHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHH
Confidence 78898888877 56666677888899999975 678999999999999874
No 3
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.62 E-value=5.4e-17 Score=153.23 Aligned_cols=116 Identities=19% Similarity=0.375 Sum_probs=85.7
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccccccccccccCCCCcccccccCCCCCCCC
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKKHKTLKATARKSPNIISEKGRGRNASAKG 311 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~~~~~k~~~~k~p~l~~e~~~~r~as~~~ 311 (490)
+++|.+|+.+| .||+||+|+++||+.|+.|+|..+|.|+|+|+.|+.......... .... ...+......
T Consensus 2 ~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~~~~~~g-----~~s~--~~~~~~~~~~ 71 (189)
T 2ro1_A 2 ATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDG-----SLSL--DGADSTGVVA 71 (189)
T ss_dssp CCCBTTTCCCS---SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCCTTCSCS-----SCCS--SSSSSSCSSC
T ss_pred CCcCccCCCCC---ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCCCCCcccc-----cccc--cccccccccc
Confidence 36899999988 799999999999999999999999999999999987643211000 0000 0001112235
Q ss_pred CCChhhhhccc-CCCceeeeecCCCccccCCCCCCCCCCCCCCcC--CCccCCCC
Q 011239 312 EPSPIELMLTS-TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALG--EPLELDTS 363 (490)
Q Consensus 312 ~mnpie~~L~e-~~~y~~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~--ePMdLd~s 363 (490)
+|++.++++++ ++..+..+..+.+|..+|.. .|+++|+ +||||++-
T Consensus 72 ~m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~~------~Yy~iIk~~~PMDL~tI 120 (189)
T 2ro1_A 72 KLSPANQRKCERVLLALFCHEPCRPLHQLATD------STFSLDQPGGTLDLTLI 120 (189)
T ss_dssp SSCHHHHHHHHHHHHHHHHSTTHHHHHSCSCC------TTCSSSCSSCCCCHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCccchhhcCCCCh------hhhccccCCCcccHHHH
Confidence 78999888888 55566566777799999874 6999998 79999874
No 4
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.56 E-value=2.5e-15 Score=129.98 Aligned_cols=95 Identities=21% Similarity=0.403 Sum_probs=78.4
Q ss_pred CccccccCCcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCcccccccccccccccCCCCeEEecCCCCccc
Q 011239 179 SAVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGICSRSCKICGRSETALKLLLCDDCEEAFH 258 (490)
Q Consensus 179 ~ic~~e~~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c~~~C~VC~~~g~~~~LL~CD~Cdr~yH 258 (490)
.+|...++.+++...+.|...||..++... +..++.+.|+|++| .+|.+|+..++++.||+||.|+++||
T Consensus 11 ~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~---------~~~~~~~~W~C~~C-~~C~~C~~~~~~~~ll~Cd~C~~~yH 80 (111)
T 2ysm_A 11 AVCDSPGDLLDQFFCTTCGQHYHGMCLDIA---------VTPLKRAGWQCPEC-KVCQNCKQSGEDSKMLVCDTCDKGYH 80 (111)
T ss_dssp TTTCCCCCTTTSEECSSSCCEECTTTTTCC---------CCTTTSTTCCCTTT-CCCTTTCCCSCCTTEEECSSSCCEEE
T ss_pred cCCCCCCCCcCCeECCCCCCCcChHHhCCc---------cccccccCccCCcC-CcccccCccCCCCCeeECCCCCcHHh
Confidence 555544444455778899988888886552 13356789999998 58999999998889999999999999
Q ss_pred ccccCCCcCCCCCCCcccccccccc
Q 011239 259 VTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 259 ~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
++|+.|+|..+|.|+|||+.|...+
T Consensus 81 ~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 81 TFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp GGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred HHhcCCccccCCCCCcCCcCCcCcC
Confidence 9999999999999999999998754
No 5
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.55 E-value=4.1e-16 Score=136.30 Aligned_cols=92 Identities=27% Similarity=0.552 Sum_probs=76.4
Q ss_pred cCCcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCcccccccccccccccCCCCeEEecCCCCcccccccCC
Q 011239 185 TTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGICSRSCKICGRSETALKLLLCDDCEEAFHVTCYTP 264 (490)
Q Consensus 185 ~~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~P 264 (490)
+.++++...+.|...||..++-.. + ...+.++.+.|+|++| ..|.+|+..++++.||+||.|+++||++|+.|
T Consensus 18 g~~~~Li~C~~C~~~~H~~Cl~~~--~----~~~~~~~~~~W~C~~C-~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p 90 (114)
T 2kwj_A 18 GRPEELVSCADCGRSGHPTCLQFT--L----NMTEAVKTYKWQCIEC-KSCILCGTSENDDQLLFCDDCDRGYHMYCLNP 90 (114)
T ss_dssp CCCCCCEECSSSCCEECTTTTTCC--H----HHHHHHHHTTCCCGGG-CCCTTTTCCTTTTTEEECSSSCCEEETTTSSS
T ss_pred CCCCCCeEeCCCCCccchhhCCCh--h----hhhhccCCCccCcccc-CccCcccccCCCCceEEcCCCCccccccccCC
Confidence 446788888999999888886541 0 0112456789999998 68999999888889999999999999999999
Q ss_pred CcCCCCCCCcccccccccc
Q 011239 265 RIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 265 pL~~iP~g~W~C~~C~~~~ 283 (490)
||..+|.|+|||+.|....
T Consensus 91 pl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 91 PVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCSSCCSSCCCCHHHHHHH
T ss_pred CccCCCCCCeECccccchh
Confidence 9999999999999998643
No 6
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.53 E-value=1.2e-15 Score=132.92 Aligned_cols=90 Identities=22% Similarity=0.521 Sum_probs=73.5
Q ss_pred cCCcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCccccccccccccccc-CCCCeEEecCCCCcccccccC
Q 011239 185 TTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGICSRSCKICGRSE-TALKLLLCDDCEEAFHVTCYT 263 (490)
Q Consensus 185 ~~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c~~~C~VC~~~g-~~~~LL~CD~Cdr~yH~~Cl~ 263 (490)
+.++++...+.|...+|..+|-.. | ...+.++.+.|+|++| .+|.+|+..+ +++.||+||.|+++||++|+.
T Consensus 21 g~~~~Ll~C~~C~~~~H~~Cl~~~--~----~~~~~~~~~~W~C~~C-~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~ 93 (112)
T 3v43_A 21 KKPEELISCADCGNSGHPSCLKFS--P----ELTVRVKALRWQCIEC-KTCSSCRDQGKNADNMLFCDSCDRGFHMECCD 93 (112)
T ss_dssp SCCCCCEECTTTCCEECHHHHTCC--H----HHHHHHHTSCCCCTTT-CCBTTTCCCCCTTCCCEECTTTCCEECGGGCS
T ss_pred CCchhceEhhhcCCCCCCchhcCC--H----HHHHHhhccccccccC-CccccccCcCCCccceEEcCCCCCeeecccCC
Confidence 456788889999888887776431 0 0113456789999999 6899999864 456899999999999999999
Q ss_pred CCcCCCCCCCcccccccc
Q 011239 264 PRIKIVPSDEWFCHLCLK 281 (490)
Q Consensus 264 PpL~~iP~g~W~C~~C~~ 281 (490)
|+|.++|+|+|||+.|+.
T Consensus 94 p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 94 PPLTRMPKGMWICQICRP 111 (112)
T ss_dssp SCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCeECCCCCC
Confidence 999999999999999975
No 7
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.47 E-value=2.9e-14 Score=115.04 Aligned_cols=57 Identities=37% Similarity=1.003 Sum_probs=53.4
Q ss_pred CCCCCcccccccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCC-Ccccccccc
Q 011239 223 SGTGCSGICSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSD-EWFCHLCLK 281 (490)
Q Consensus 223 ~g~w~cp~c~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g-~W~C~~C~~ 281 (490)
...|.|++| .|.+|++.++.+.||+||.|+++||++|+.|||..+|+| +|||+.|..
T Consensus 11 ~~~w~C~~C--~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 11 DVNRLCRVC--ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp CTTSCCTTT--SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCeECCCC--CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 568999988 999999887778999999999999999999999999999 999999985
No 8
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.46 E-value=3.1e-14 Score=117.06 Aligned_cols=57 Identities=35% Similarity=0.998 Sum_probs=53.5
Q ss_pred CCCCCcccccccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCC-cccccccc
Q 011239 223 SGTGCSGICSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDE-WFCHLCLK 281 (490)
Q Consensus 223 ~g~w~cp~c~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~-W~C~~C~~ 281 (490)
++.|+|+.| .|.+|+..++++.||+||.|+++||++|+.|||..+|.|+ |||+.|+.
T Consensus 19 ~~~W~C~~C--~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 19 DVNRLCRVC--ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp CTTSCCTTT--SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCCCCCC--cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 478999999 8999999998899999999999999999999999999999 99999974
No 9
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=7.6e-14 Score=114.68 Aligned_cols=57 Identities=33% Similarity=0.905 Sum_probs=52.7
Q ss_pred CCCCCcccccccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCC-Ccccccccc
Q 011239 223 SGTGCSGICSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSD-EWFCHLCLK 281 (490)
Q Consensus 223 ~g~w~cp~c~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g-~W~C~~C~~ 281 (490)
...|.|+++ .|.+|+..++.+.||+||.|+++||++|+.|||..+|.| +|||+.|..
T Consensus 19 ~~~w~C~~c--~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 19 DPEKKCHSC--SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp CSSSCCSSS--SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCeECCCC--CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 357999977 999999887788999999999999999999999999999 999999974
No 10
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.41 E-value=6.2e-14 Score=105.70 Aligned_cols=49 Identities=41% Similarity=1.009 Sum_probs=46.0
Q ss_pred cccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCccccccccc
Q 011239 234 SCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 234 ~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
.|.+|+.+++++.||+||.|+++||++|+.|+|.++|.|+|||+.|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 5899999988889999999999999999999999999999999999753
No 11
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.41 E-value=8.1e-14 Score=119.79 Aligned_cols=58 Identities=34% Similarity=0.796 Sum_probs=51.9
Q ss_pred cCCCceEecccccCCCCCCCCcccCCCccccCcccc----cCCCCceecccccCCCCCCCCCCCCCCcHHHHHHHHH
Q 011239 380 SSIGNWLQCKQVLEGTGDGVDGTSCGKWRRAPLFEV----QTDDWECFCAVQWDPTHADCAVPQELETDEVSKQLKY 452 (490)
Q Consensus 380 ~s~gnw~qC~~c~~~~~~~~~~i~C~kwrr~p~~~~----~~~~w~c~c~~~wdp~h~dC~~P~el~~~~~~~~l~~ 452 (490)
....+||||. .|.||||+|..+. ++++|+|++| |||.|.+|.+|||+.++||..+|+.
T Consensus 23 ~~~~~WVQCD-------------~C~KWRrLP~~~~~~~~~pd~W~C~mN--~D~~~nsCs~PEE~~~~ei~~~l~~ 84 (100)
T 2l7p_A 23 STESAWVRCD-------------DCFKWRRIPASVVGSIDESSRWICMNN--SDKRFADCSKSQEMSNEEINEELGI 84 (100)
T ss_dssp SSSSEEEECT-------------TTCCEEEECHHHHTTSTTSSCCCGGGS--SCSSSCSTTSCCSSCHHHHHHHHTC
T ss_pred CCCCeEEeeC-------------CCCccccCChhHccccCCCCCceeCCC--CCCCCCCCCCccCCCHHHHHHHhcc
Confidence 4688999999 8999999998754 6899999886 6999999999999999999988865
No 12
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.39 E-value=2.2e-13 Score=106.96 Aligned_cols=49 Identities=31% Similarity=0.935 Sum_probs=45.4
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
+.+|.+|+.++ .||+||.|+++||++|+.|+|.++|.|+|||+.|..+.
T Consensus 9 ~~~C~vC~~~g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 9 MEFCRVCKDGG---ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCTTTCCCS---SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCcCCCCCCCC---CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 46899999877 89999999999999999999999999999999998754
No 13
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.4e-13 Score=116.50 Aligned_cols=60 Identities=27% Similarity=0.729 Sum_probs=53.4
Q ss_pred CCCCCcccccccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 223 SGTGCSGICSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 223 ~g~w~cp~c~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
...|.+.++ ..|.+|+.+++++.||+||.|+++||++|+.|||..+|.|+|||+.|....
T Consensus 8 ~s~~~~~~~-~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 8 HSSAQFIDS-YICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCCCCC-CCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CchhhccCC-CCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 345777654 689999999888899999999999999999999999999999999998754
No 14
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.37 E-value=4.7e-13 Score=112.75 Aligned_cols=49 Identities=35% Similarity=0.987 Sum_probs=45.7
Q ss_pred ccccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCccccccccc
Q 011239 231 CSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 231 c~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
++++|.+|+.+| .||+||.|+++||++|+.|+|.++|.|+|||+.|...
T Consensus 24 n~~~C~vC~~~g---~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSSS---CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCcCcCcCCCC---CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 357899999988 7999999999999999999999999999999999865
No 15
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.35 E-value=2.6e-13 Score=107.97 Aligned_cols=50 Identities=34% Similarity=0.976 Sum_probs=45.9
Q ss_pred ccccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 231 CSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 231 c~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
++++|.+|+.++ .||+||.|+++||++|+.|+|..+|.|+|||+.|..++
T Consensus 7 ~~~~C~vC~~~g---~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 7 NEDECAVCRDGG---ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CCCSBSSSSCCS---SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCccCCCCC---CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 356899999887 89999999999999999999999999999999998754
No 16
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=4e-13 Score=103.50 Aligned_cols=47 Identities=34% Similarity=1.037 Sum_probs=44.0
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLK 281 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~ 281 (490)
+.+|.+|+.++ .||+||.|+++||+.|+.|+|..+|.|+|||+.|..
T Consensus 9 ~~~C~vC~~~g---~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKSG---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCSS---CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCccCCCCC---eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 56899999887 899999999999999999999999999999999964
No 17
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.34 E-value=3.1e-13 Score=113.38 Aligned_cols=57 Identities=21% Similarity=0.670 Sum_probs=48.9
Q ss_pred ccccccccccccccC--CCCeEEecCCCCcccccccCCCcCC----CCCCCcccccccccccc
Q 011239 229 GICSRSCKICGRSET--ALKLLLCDDCEEAFHVTCYTPRIKI----VPSDEWFCHLCLKKKHK 285 (490)
Q Consensus 229 p~c~~~C~VC~~~g~--~~~LL~CD~Cdr~yH~~Cl~PpL~~----iP~g~W~C~~C~~~~~~ 285 (490)
.+.+.+|.+|+.+.. .+.||+||.|+++||++||.|+|.. +|.|+|||+.|+.....
T Consensus 13 ~e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 13 MEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 344678999998754 3689999999999999999999995 99999999999876543
No 18
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.34 E-value=3.5e-13 Score=107.71 Aligned_cols=48 Identities=29% Similarity=0.690 Sum_probs=44.3
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
...|.+|++++ +||+||.|+++||++|+.|+|..+|.|+|||+.|...
T Consensus 12 ~~~C~vC~~~~---~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDGT---DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCCT---TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCCC---eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 45799999877 7999999999999999999999999999999999764
No 19
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.32 E-value=3.7e-13 Score=104.95 Aligned_cols=49 Identities=33% Similarity=0.995 Sum_probs=45.3
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
+++|.+|+.++ .||+||.|+++||++|+.|+|..+|.|+|||+.|....
T Consensus 5 ~~~C~vC~~~g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 5 EDFCSVCRKSG---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CSSCTTTCCCS---SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCcCCCCCC---cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 46899999987 89999999999999999999999999999999998654
No 20
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=8.2e-13 Score=103.68 Aligned_cols=48 Identities=31% Similarity=0.982 Sum_probs=44.7
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
+.+|.+|+.++ .||+||.|+++||++|+.|+|.++|.|+|||+.|...
T Consensus 11 ~~~C~vC~~~g---~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 11 QDYCEVCQQGG---EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCTTTSCCS---SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCccCCCCC---cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 46899999877 8999999999999999999999999999999999764
No 21
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=99.28 E-value=1.6e-12 Score=126.08 Aligned_cols=58 Identities=38% Similarity=1.013 Sum_probs=49.5
Q ss_pred CCCCCCcccccccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCC-Ccccccccc
Q 011239 222 DSGTGCSGICSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSD-EWFCHLCLK 281 (490)
Q Consensus 222 p~g~w~cp~c~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g-~W~C~~C~~ 281 (490)
..+.|.|.+| .|.+|+..++.+.||+||.|+++||++|+.|||..+|.| +|||+.|..
T Consensus 166 ~~~~w~C~~c--~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 166 DDVNRLCRVC--ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TCTTSCCTTT--SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCEecCCC--CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 4568999977 899999988888999999999999999999999999999 999999975
No 22
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.26 E-value=1.1e-12 Score=103.66 Aligned_cols=53 Identities=30% Similarity=0.893 Sum_probs=46.0
Q ss_pred ccccccccccc--cCCCCeEEecCCCCcccccccCCCcCC--C-CCCCcccccccccc
Q 011239 231 CSRSCKICGRS--ETALKLLLCDDCEEAFHVTCYTPRIKI--V-PSDEWFCHLCLKKK 283 (490)
Q Consensus 231 c~~~C~VC~~~--g~~~~LL~CD~Cdr~yH~~Cl~PpL~~--i-P~g~W~C~~C~~~~ 283 (490)
.+..|.+|+.+ .+.+.||+||.|+++||++|+.|+|.. + |.|+|||+.|...+
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 35689999987 344699999999999999999999987 4 89999999998754
No 23
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.20 E-value=6.8e-12 Score=101.26 Aligned_cols=53 Identities=34% Similarity=0.684 Sum_probs=45.6
Q ss_pred ccCCCceEecccccCCCCCCCCcccCCCccccCcc---cccCCCCceecccccCCCCCCCCCCCCCCcH
Q 011239 379 LSSIGNWLQCKQVLEGTGDGVDGTSCGKWRRAPLF---EVQTDDWECFCAVQWDPTHADCAVPQELETD 444 (490)
Q Consensus 379 ~~s~gnw~qC~~c~~~~~~~~~~i~C~kwrr~p~~---~~~~~~w~c~c~~~wdp~h~dC~~P~el~~~ 444 (490)
+....+||||.. -.|.||||+|.. ..+|+.|+|++|. ||.+++|++|||+.++
T Consensus 12 ~~~~~~WVQCd~-----------p~C~KWR~LP~~~~~~~lpd~W~C~mN~--d~~~~~Cs~pEE~~~~ 67 (69)
T 2e61_A 12 FGQCLVWVQCSF-----------PNCGKWRRLCGNIDPSVLPDNWSCDQNT--DVQYNRCDIPEETWTG 67 (69)
T ss_dssp CCCCCCEEECSS-----------TTTCCEEECCSSCCTTTSCTTCCGGGCS--CGGGCSSSSCCCCCCC
T ss_pred CCCCCeEEEeCc-----------cccCcccCCccccccccCCCcCEeCCCC--CCccCCCCCCcccCCC
Confidence 467899999992 279999999987 4579999999875 9999999999999875
No 24
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.16 E-value=5.2e-12 Score=102.26 Aligned_cols=50 Identities=34% Similarity=0.901 Sum_probs=44.3
Q ss_pred ccccccccccc--CCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 232 SRSCKICGRSE--TALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 232 ~~~C~VC~~~g--~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
++.|.+|+.++ +++.||+||.|+++||++|+.|+ .+|+|+|||+.|..++
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~--~vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQSR 67 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS--SCCSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC--cCCCCCcCCccCcCcC
Confidence 46899999876 67799999999999999999887 4999999999998754
No 25
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.13 E-value=1.4e-11 Score=103.41 Aligned_cols=51 Identities=33% Similarity=0.864 Sum_probs=45.1
Q ss_pred cccccccccccc--CCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 231 CSRSCKICGRSE--TALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 231 c~~~C~VC~~~g--~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
++.+|.+|+.++ +++.||+||.|+++||++|+.|++ +|.|+|||+.|....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccCcc
Confidence 457899999876 667999999999999999999874 899999999998754
No 26
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.02 E-value=9.4e-11 Score=94.77 Aligned_cols=54 Identities=26% Similarity=0.642 Sum_probs=47.7
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKKHK 285 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~~~ 285 (490)
..+|.+|+...+.+.||+||.|+++||+.|+.+++..+|.++|||+.|..+..+
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 468999999877778999999999999999999888888899999999876433
No 27
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.91 E-value=1.7e-11 Score=113.11 Aligned_cols=108 Identities=17% Similarity=0.252 Sum_probs=72.8
Q ss_pred cccccccccccC-CCCeEEecCCCCcccccccCCCcCC-CCCCCcccccccccccccccccccCCCCcccccccCCCCCC
Q 011239 232 SRSCKICGRSET-ALKLLLCDDCEEAFHVTCYTPRIKI-VPSDEWFCHLCLKKKHKTLKATARKSPNIISEKGRGRNASA 309 (490)
Q Consensus 232 ~~~C~VC~~~g~-~~~LL~CD~Cdr~yH~~Cl~PpL~~-iP~g~W~C~~C~~~~~~~~k~~~~k~p~l~~e~~~~r~as~ 309 (490)
..+| +|+..++ ...|+.||.|+++||..|+...... ...+.|+|+.|+........
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~~~--------------------- 65 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAMTV--------------------- 65 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHHHHTT---------------------
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchhccccc---------------------
Confidence 4578 9998764 4579999999999999999432221 23579999999875422100
Q ss_pred CCCCChhhhhccc-CCCceeeeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 310 KGEPSPIELMLTS-TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 310 ~~~mnpie~~L~e-~~~y~~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
...+++.++.... ++..+.....+..|..+|.. ...++|+++|++||||.+-
T Consensus 66 ~~~l~~~~~~~l~~il~~l~~~~~~~~F~~pv~~--~~~pdY~~~I~~PmdL~tI 118 (174)
T 2ri7_A 66 LTPLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDP--NDAPDYYGVIKEPMDLATM 118 (174)
T ss_dssp TSBCCHHHHHHHHHHHHHHHTSGGGTTTSSCCCT--TTCHHHHHHCSSCCCHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhhhhhhhhhcCCCc--ccCCchHHHhCCcCCHHHH
Confidence 1123443333323 34444455677789999854 2467899999999999874
No 28
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.82 E-value=1.6e-09 Score=94.14 Aligned_cols=47 Identities=30% Similarity=0.782 Sum_probs=42.2
Q ss_pred ccccccccccccCCCCeEEec--CCCCcccccccCCCcCCCCCCCccccccccc
Q 011239 231 CSRSCKICGRSETALKLLLCD--DCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 231 c~~~C~VC~~~g~~~~LL~CD--~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
.+++|.+|+.+| +||+|| .|+++||+.|+. |..+|.|+|||+.|...
T Consensus 14 ~~~~C~~C~~~G---~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 14 HEDYCFQCGDGG---ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp SCSSCTTTCCCS---EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCCCCCcCCCCC---cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 457899999887 899999 899999999995 99999999999988753
No 29
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.72 E-value=8.9e-09 Score=83.22 Aligned_cols=49 Identities=29% Similarity=0.820 Sum_probs=41.4
Q ss_pred ccccccccccccCCCCeEEecC--CC-CcccccccCCCcCCCCCCCcccccccccc
Q 011239 231 CSRSCKICGRSETALKLLLCDD--CE-EAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 231 c~~~C~VC~~~g~~~~LL~CD~--Cd-r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
...+| +|++..+ ..||.||. |+ .+||+.|+ .|..+|.|.|||+.|..++
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cv--gl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTT--TCSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccC--CcCcCCCCCEECCCCCccc
Confidence 35688 7998543 47999999 77 69999999 6899999999999998754
No 30
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.67 E-value=6.6e-09 Score=81.26 Aligned_cols=47 Identities=30% Similarity=0.875 Sum_probs=39.4
Q ss_pred cccccccccccCCCCeEEecC--CC-CcccccccCCCcCCCCCCCccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDD--CE-EAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~--Cd-r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
..+| +|++..+ ..||.||. |+ .+||+.|+ .|..+|.|.|||+.|..+
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cv--gl~~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQE 59 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHC-
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcC--CCCcCCCCCEECcCccCc
Confidence 4678 8998654 47999999 65 79999999 689999999999999764
No 31
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.66 E-value=1.2e-08 Score=88.02 Aligned_cols=50 Identities=20% Similarity=0.663 Sum_probs=45.4
Q ss_pred ccccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCccccccc
Q 011239 231 CSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCL 280 (490)
Q Consensus 231 c~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~ 280 (490)
++++|.+|+.+|+.+.||+|+.|+++||+.|+.+++..++.+.|+|+.|.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 35789999999977788999999999999999999888888999999986
No 32
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.65 E-value=8.4e-09 Score=80.52 Aligned_cols=47 Identities=30% Similarity=0.905 Sum_probs=40.0
Q ss_pred cccccccccccCCCCeEEecC--CC-CcccccccCCCcCCCCCCCccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDD--CE-EAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~--Cd-r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
..+| +|++..+ ..||.||. |+ ..||+.|+ .|+..|.|.|||+.|..+
T Consensus 9 ~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cv--gl~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 9 PTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACV--DLTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHCC
T ss_pred CcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccC--CcccCCCCCEECcCccCc
Confidence 4678 8998543 47999999 77 69999999 689999999999999764
No 33
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.65 E-value=3.6e-09 Score=96.22 Aligned_cols=49 Identities=24% Similarity=0.782 Sum_probs=43.9
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCCcC-----C--CCCCCcccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIK-----I--VPSDEWFCHLCLKKK 283 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~-----~--iP~g~W~C~~C~~~~ 283 (490)
+++|.+|+.+| .||+||.|+++||..|+.|+|. + .|.|+|+|+.|..+.
T Consensus 63 ~d~C~vC~~GG---~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~p 118 (142)
T 2lbm_A 63 DEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEP 118 (142)
T ss_dssp BCSCSSSCCCS---SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCT
T ss_pred CCeecccCCCC---cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCcc
Confidence 47999999999 8999999999999999999886 2 489999999998653
No 34
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.63 E-value=2.3e-08 Score=85.25 Aligned_cols=49 Identities=24% Similarity=0.697 Sum_probs=41.9
Q ss_pred ccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 233 RSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 233 ~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
..| +|+...+...||+||.|+++||+.|+.|++..+|+ .|||+.|+.+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~~~~ 77 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQPRN 77 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTSSSC
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCcCCC
Confidence 356 78777666799999999999999999999988885 89999997543
No 35
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.57 E-value=4e-08 Score=83.17 Aligned_cols=49 Identities=29% Similarity=0.820 Sum_probs=41.2
Q ss_pred ccccccccccccCCCCeEEecC--CC-CcccccccCCCcCCCCCCCcccccccccc
Q 011239 231 CSRSCKICGRSETALKLLLCDD--CE-EAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 231 c~~~C~VC~~~g~~~~LL~CD~--Cd-r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
...+| +|++..+ ..||.||. |+ .+||+.|+ .|...|.|.|||+.|..++
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CV--gl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTT--TCSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccC--CcCcCCCCCEECcCccCcC
Confidence 34678 9998554 47999999 77 79999999 6899999999999998754
No 36
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.55 E-value=2.3e-08 Score=78.79 Aligned_cols=48 Identities=27% Similarity=0.821 Sum_probs=40.0
Q ss_pred ccccccccccccCCCCeEEecC--CC-CcccccccCCCcCCCCCCCccccccccc
Q 011239 231 CSRSCKICGRSETALKLLLCDD--CE-EAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 231 c~~~C~VC~~~g~~~~LL~CD~--Cd-r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
...+| +|++..+ ..||.||. |+ +.||+.|+ .|...|.|.|||+.|..+
T Consensus 10 e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cv--gl~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCV--SLTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHTC
T ss_pred CCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccC--CcCcCCCCCEECcCcccC
Confidence 34678 8998543 37999999 55 99999999 688899999999999764
No 37
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.52 E-value=2.8e-08 Score=83.95 Aligned_cols=47 Identities=28% Similarity=0.751 Sum_probs=39.7
Q ss_pred cccccccccccCCCCeEEecCCC---CcccccccCCCcCCCCCCCccccc-cccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCE---EAFHVTCYTPRIKIVPSDEWFCHL-CLKK 282 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cd---r~yH~~Cl~PpL~~iP~g~W~C~~-C~~~ 282 (490)
..+| +|+...+. .||.||.|+ .+||+.|+ .|...|.|.|||+. |...
T Consensus 26 ~~yC-iC~~~~~g-~MI~CD~c~C~~eWfH~~CV--gl~~~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 26 EVYC-FCRNVSYG-PMVACDNPACPFEWFHYGCV--GLKQAPKGKWYCSKDCKEI 76 (90)
T ss_dssp SCCS-TTTCCCSS-SEECCCSSSCSCSCEETTTS--SCSSCTTSCCCSSHHHHHH
T ss_pred CcEE-EeCCCCCC-CEEEecCCCCccccCcCccC--CCCcCCCCCccCChhhcch
Confidence 4578 89975543 699999977 89999999 78999999999999 9854
No 38
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.39 E-value=2.3e-08 Score=89.63 Aligned_cols=49 Identities=24% Similarity=0.831 Sum_probs=43.0
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCCc-----CCC--CCCCcccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRI-----KIV--PSDEWFCHLCLKKK 283 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL-----~~i--P~g~W~C~~C~~~~ 283 (490)
+++|.+|+.+| +|++||.|+++||..|+.|+| .++ |.++|+|..|..+.
T Consensus 57 ~~~C~vC~dGG---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 57 DEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp BSSCTTTCCCS---EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCcCeecCCCC---eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 56899999999 899999999999999999874 354 88999999997653
No 39
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.34 E-value=3.3e-07 Score=79.68 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=64.4
Q ss_pred CCccccccc--chhhhhhccCcccccCCccccCCCCCCCCCCCCcccccccccccccccCCCCeEEecCCCCcccccccC
Q 011239 186 TGKDLSAKD--LCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGICSRSCKICGRSETALKLLLCDDCEEAFHVTCYT 263 (490)
Q Consensus 186 ~ged~s~~D--~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~ 263 (490)
+++++...| .|...|+..++.. ..+|.|+|+||.+ .|.+|++.. .+.|..|+++||..|+.
T Consensus 23 ~~G~ll~CD~~~Cp~~fH~~Cl~L-----------~~~P~g~W~Cp~c--~C~~C~k~~----~~~C~~Cp~sfC~~c~~ 85 (107)
T 4gne_A 23 DGGELVMCDKKDCPKAYHLLCLNL-----------TQPPYGKWECPWH--QCDECSSAA----VSFCEFCPHSFCKDHEK 85 (107)
T ss_dssp CCSEEEECCSTTCCCEECTGGGTC-----------SSCCSSCCCCGGG--BCTTTCSBC----CEECSSSSCEECTTTCT
T ss_pred CCCcEeEECCCCCCcccccccCcC-----------CcCCCCCEECCCC--CCCcCCCCC----CcCcCCCCcchhhhccC
Confidence 577888888 7988888777643 5688999999988 799999886 38899999999999999
Q ss_pred CCcCCCCCCCccc
Q 011239 264 PRIKIVPSDEWFC 276 (490)
Q Consensus 264 PpL~~iP~g~W~C 276 (490)
+.|...+.+.|+|
T Consensus 86 g~l~~~~~~~~~c 98 (107)
T 4gne_A 86 GALVPSALEGRLC 98 (107)
T ss_dssp TSCEECTTTTCEE
T ss_pred CcceecCCCCcee
Confidence 9999999999998
No 40
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=2.2e-07 Score=74.88 Aligned_cols=48 Identities=29% Similarity=0.742 Sum_probs=39.0
Q ss_pred cccccccccccCCCCeEEecCCC---CcccccccCCCcCCCCCCCcccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCE---EAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cd---r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
..+| +|+...+ ..||.||.|+ ..||+.|+ .|...|.+.|||+.|....
T Consensus 6 ~~yC-~C~~~~~-g~MI~CD~cdC~~~WfH~~Cv--gl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 6 SGYC-ICNQVSY-GEMVGCDNQDCPIEWFHYGCV--GLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCS-TTSCCCC-SSEECCSCTTCSCCCEEHHHH--TCSSCCSSCCCCHHHHHHH
T ss_pred CeEE-EcCCCCC-CCEeEeCCCCCCccCCccccc--ccCcCCCCCEECCCCCccc
Confidence 3466 4877543 3899999986 89999999 6888899999999998754
No 41
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.04 E-value=2.6e-06 Score=68.16 Aligned_cols=49 Identities=22% Similarity=0.652 Sum_probs=40.0
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
..+| +|+...+.+.||.||.|...||..|+......+| +.|+|+.|...
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~s 67 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRDS 67 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHHTC
T ss_pred ceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCCCC
Confidence 4578 9998877678999999999999999965544455 69999999753
No 42
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.01 E-value=8.5e-07 Score=77.19 Aligned_cols=48 Identities=27% Similarity=0.625 Sum_probs=39.6
Q ss_pred cccccccccc-------CCCCeEEecCCCCcccccccCCCcC---CCCCCCccccccc
Q 011239 233 RSCKICGRSE-------TALKLLLCDDCEEAFHVTCYTPRIK---IVPSDEWFCHLCL 280 (490)
Q Consensus 233 ~~C~VC~~~g-------~~~~LL~CD~Cdr~yH~~Cl~PpL~---~iP~g~W~C~~C~ 280 (490)
++|.+|.+++ +.+.||.|+.|++.||.+|+.+.+. .++.+.|+|+.|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 4788887654 3569999999999999999987643 4788999999995
No 43
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.99 E-value=3.3e-06 Score=65.99 Aligned_cols=52 Identities=29% Similarity=0.515 Sum_probs=39.3
Q ss_pred cccccccccccC-CCCeEEecCCCCcccccccCCCcCCCC-CCCcccccccccc
Q 011239 232 SRSCKICGRSET-ALKLLLCDDCEEAFHVTCYTPRIKIVP-SDEWFCHLCLKKK 283 (490)
Q Consensus 232 ~~~C~VC~~~g~-~~~LL~CD~Cdr~yH~~Cl~PpL~~iP-~g~W~C~~C~~~~ 283 (490)
..+|.+|+...+ ...||.||.|+..||..|+........ .+.|+|+.|+.++
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 457889998754 468999999999999999943322221 2689999998754
No 44
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.89 E-value=3.2e-06 Score=72.90 Aligned_cols=50 Identities=32% Similarity=0.768 Sum_probs=40.0
Q ss_pred ccccccccc-CCCCeEEec-CCCCcccccccCCCcCC--------CCCCCcccccccccccc
Q 011239 234 SCKICGRSE-TALKLLLCD-DCEEAFHVTCYTPRIKI--------VPSDEWFCHLCLKKKHK 285 (490)
Q Consensus 234 ~C~VC~~~g-~~~~LL~CD-~Cdr~yH~~Cl~PpL~~--------iP~g~W~C~~C~~~~~~ 285 (490)
.|.+|++.- +...|+.|| .|+..||..|+ .|+. .|.+.|+|+.|..+...
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CV--glt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHRECT--GMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGGT--TCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred CCCCCCCccCCCCCEEEecCCcccccccccC--CcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 688999873 334789998 99999999999 5554 47789999999976544
No 45
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.86 E-value=5.8e-06 Score=67.44 Aligned_cols=50 Identities=24% Similarity=0.670 Sum_probs=39.9
Q ss_pred ccccccccccccCCCCeEEec--CCCCcccccccCCCcCCCCC-------CCcccccccccc
Q 011239 231 CSRSCKICGRSETALKLLLCD--DCEEAFHVTCYTPRIKIVPS-------DEWFCHLCLKKK 283 (490)
Q Consensus 231 c~~~C~VC~~~g~~~~LL~CD--~Cdr~yH~~Cl~PpL~~iP~-------g~W~C~~C~~~~ 283 (490)
...+| +|+...+...||.|| .|...||..|+ .|...+. ..|||+.|+..+
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CV--gi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCV--ILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHH--SCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEE--ccccccccccccCCCCEECCCCCccc
Confidence 34678 899886667999999 99999999999 5554432 589999998754
No 46
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.85 E-value=4.9e-06 Score=67.91 Aligned_cols=49 Identities=22% Similarity=0.480 Sum_probs=38.2
Q ss_pred ccccccccccC-CCCeEEecCCCCcccccccCCCcCCCC---CCCccccccccccc
Q 011239 233 RSCKICGRSET-ALKLLLCDDCEEAFHVTCYTPRIKIVP---SDEWFCHLCLKKKH 284 (490)
Q Consensus 233 ~~C~VC~~~g~-~~~LL~CD~Cdr~yH~~Cl~PpL~~iP---~g~W~C~~C~~~~~ 284 (490)
.+| +|+...+ ...||.||.|+..||..|+. |...+ .+.|+|+.|.....
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvg--l~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVG--IEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHT--CCHHHHTTCSBBCCTTTTTTSC
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecC--cccccccCCCeEECCCcccccC
Confidence 467 8998764 56899999999999999994 44322 36899999987653
No 47
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.79 E-value=9.4e-06 Score=65.12 Aligned_cols=50 Identities=22% Similarity=0.598 Sum_probs=38.2
Q ss_pred ccccccccccCC-CCeEEecCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 233 RSCKICGRSETA-LKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 233 ~~C~VC~~~g~~-~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
.+| +|+...+. +.||.||.|...||..|+.........+.|+|+.|..+.
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 578 79987544 479999999999999999543222234799999998754
No 48
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.78 E-value=2.7e-06 Score=73.76 Aligned_cols=50 Identities=24% Similarity=0.563 Sum_probs=39.4
Q ss_pred cccccccccc------cCCCCeEEecCCCCcccccccCC--Cc-CCCCCCCcccccccc
Q 011239 232 SRSCKICGRS------ETALKLLLCDDCEEAFHVTCYTP--RI-KIVPSDEWFCHLCLK 281 (490)
Q Consensus 232 ~~~C~VC~~~------g~~~~LL~CD~Cdr~yH~~Cl~P--pL-~~iP~g~W~C~~C~~ 281 (490)
..+|.+|.+. +..++||.|+.|++.||++|+.. .+ ..++.+.|+|+.|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~ 63 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT 63 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCc
Confidence 3478888765 34569999999999999999963 23 356789999999963
No 49
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.77 E-value=3.3e-06 Score=68.34 Aligned_cols=48 Identities=29% Similarity=0.681 Sum_probs=38.9
Q ss_pred ccccccccccCCCCeEEecCCCCcccccccCCCcCCC-------CCCCcccccccccc
Q 011239 233 RSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIV-------PSDEWFCHLCLKKK 283 (490)
Q Consensus 233 ~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~i-------P~g~W~C~~C~~~~ 283 (490)
.+| +|+...+...||.||.|+..||..|+ .|... ....|+|+.|..+.
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cv--gl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCV--GISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHH--SCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEE--ccchhhhhhccCCCCeEECcCCcCcc
Confidence 577 89988776789999999999999999 44432 24689999998754
No 50
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.71 E-value=1.4e-05 Score=63.55 Aligned_cols=48 Identities=27% Similarity=0.695 Sum_probs=36.7
Q ss_pred cccccccccccCCCCeEEecC--CCCcccccccCCCcCCCCC------CCccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDD--CEEAFHVTCYTPRIKIVPS------DEWFCHLCLKK 282 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~--Cdr~yH~~Cl~PpL~~iP~------g~W~C~~C~~~ 282 (490)
..+| +|+...+...||.||. |...||..|+ .|...|. ..|||+.|+..
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cv--gi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCV--LIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTS--CCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhC--CCCcccccccCCCCcEECcCccCc
Confidence 4567 7988776779999995 9999999999 4433221 37999999864
No 51
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.69 E-value=7e-06 Score=65.19 Aligned_cols=46 Identities=28% Similarity=0.749 Sum_probs=38.5
Q ss_pred ccccccccccC-CCCeEEec-CCCCcccccccCCCcCC--------CCCCCccccccc
Q 011239 233 RSCKICGRSET-ALKLLLCD-DCEEAFHVTCYTPRIKI--------VPSDEWFCHLCL 280 (490)
Q Consensus 233 ~~C~VC~~~g~-~~~LL~CD-~Cdr~yH~~Cl~PpL~~--------iP~g~W~C~~C~ 280 (490)
..|.+|++..+ ...|+.|| .|.+.||..|+ .|+. .|.+.|+|+.|.
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv--glt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRICT--GMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH--TCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhcc--CCCHHHHHHhhccCCCcEECcCcc
Confidence 46899999754 56899999 99999999999 5554 477899999996
No 52
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.55 E-value=4.3e-05 Score=57.65 Aligned_cols=44 Identities=23% Similarity=0.658 Sum_probs=35.8
Q ss_pred ccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccc
Q 011239 237 ICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLK 281 (490)
Q Consensus 237 VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~ 281 (490)
+|+...+...||.||.|...||..|+......+| +.|+|+.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCCC
Confidence 7888776669999999999999999965444445 6999999964
No 53
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.44 E-value=3.4e-05 Score=62.36 Aligned_cols=49 Identities=24% Similarity=0.598 Sum_probs=37.5
Q ss_pred ccccccccccC-CCCeEEecCCCCcccccccCCCcCCCCC---CCccccccccccc
Q 011239 233 RSCKICGRSET-ALKLLLCDDCEEAFHVTCYTPRIKIVPS---DEWFCHLCLKKKH 284 (490)
Q Consensus 233 ~~C~VC~~~g~-~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~---g~W~C~~C~~~~~ 284 (490)
.+| +|+...+ ...||.||.|+..||..|+ .|...+. +.|+|+.|..+..
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cv--g~~~~~~~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCV--GVEEEEAPDIDIYHCPNCEKTHG 63 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHH--TCCTTTGGGBSSCCCHHHHHHHC
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccc--cccccccCCCCEEECCCCcccCC
Confidence 355 8887654 4689999999999999999 4454432 5799999987643
No 54
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.36 E-value=4.1e-05 Score=57.84 Aligned_cols=45 Identities=24% Similarity=0.668 Sum_probs=34.7
Q ss_pred cccccccccC-CCCeEEec-CCCCcccccccCCCcCCCC--CCCccccccc
Q 011239 234 SCKICGRSET-ALKLLLCD-DCEEAFHVTCYTPRIKIVP--SDEWFCHLCL 280 (490)
Q Consensus 234 ~C~VC~~~g~-~~~LL~CD-~Cdr~yH~~Cl~PpL~~iP--~g~W~C~~C~ 280 (490)
.|-+|+++.+ ...|+.|| .|+..||..|+ .|+..+ .+.|+|+.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cv--gl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCV--GVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTT--TCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCccccc--CCCccccCCCCEECCCCC
Confidence 3678888764 45799999 89999999999 554332 3789999985
No 55
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.14 E-value=7.2e-05 Score=62.46 Aligned_cols=50 Identities=26% Similarity=0.593 Sum_probs=40.3
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCC------------cCCCCCCCccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPR------------IKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~Pp------------L~~iP~g~W~C~~C~~~ 282 (490)
++.|.||.... .+.++-|..|.|.||..|+.++ +...+..-|.|+.|...
T Consensus 15 D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 15 DEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp SCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred CcccCcccccc-ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 56888998544 3478899999999999999874 44557778999999764
No 56
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.85 E-value=0.0003 Score=66.28 Aligned_cols=50 Identities=20% Similarity=0.608 Sum_probs=37.8
Q ss_pred ccccccccccCCC----CeEEecCCCCcccccccCCCcCC--------CCC-CCccccccccccc
Q 011239 233 RSCKICGRSETAL----KLLLCDDCEEAFHVTCYTPRIKI--------VPS-DEWFCHLCLKKKH 284 (490)
Q Consensus 233 ~~C~VC~~~g~~~----~LL~CD~Cdr~yH~~Cl~PpL~~--------iP~-g~W~C~~C~~~~~ 284 (490)
.+|.+|+..-+++ .|+.||.|++.||..|+. |.. +|+ ..|+|+.|+.+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvg--i~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCEN--LSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSS--CCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccc--cCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 3688888765443 499999999999999994 432 232 3799999998654
No 57
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=96.82 E-value=0.00032 Score=74.86 Aligned_cols=51 Identities=22% Similarity=0.539 Sum_probs=39.6
Q ss_pred ccccccccccC-CCCeEEecCCCCcccccccCCCcCCCCC---CCccccccccccccc
Q 011239 233 RSCKICGRSET-ALKLLLCDDCEEAFHVTCYTPRIKIVPS---DEWFCHLCLKKKHKT 286 (490)
Q Consensus 233 ~~C~VC~~~g~-~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~---g~W~C~~C~~~~~~~ 286 (490)
.+| +|+...+ ...|+.||.|+..||..|+ .+...+. +.|+|+.|..+....
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cv--gl~~~~~~~~~~~~C~~C~~~~~~~ 92 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCV--GVEEHHAVDIDLYHCPNCAVLHGSS 92 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHH--TCCGGGGGGEEEBCCHHHHHHHCSC
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeec--CcCcccccCCCEEECCCCcCCcCcc
Confidence 456 8988654 5689999999999999999 5555442 579999998765443
No 58
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=96.64 E-value=0.002 Score=55.41 Aligned_cols=49 Identities=20% Similarity=0.408 Sum_probs=33.4
Q ss_pred cccccccc-CCCCeEEecCCCCcccccccCCCcCCCCCC----Ccccccccccc
Q 011239 235 CKICGRSE-TALKLLLCDDCEEAFHVTCYTPRIKIVPSD----EWFCHLCLKKK 283 (490)
Q Consensus 235 C~VC~~~g-~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g----~W~C~~C~~~~ 283 (490)
|..|.... .+..||.|+.|++.||..|+.+....++.+ .|+|+.|....
T Consensus 62 c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 62 VDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp BCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC---
T ss_pred ccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCC
Confidence 44443332 345789999999999999998865544333 49999998653
No 59
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=96.23 E-value=0.0015 Score=70.28 Aligned_cols=38 Identities=21% Similarity=0.690 Sum_probs=30.4
Q ss_pred CCeEEecCCCCcccccccCCCcCCC---CCCCccccccccccc
Q 011239 245 LKLLLCDDCEEAFHVTCYTPRIKIV---PSDEWFCHLCLKKKH 284 (490)
Q Consensus 245 ~~LL~CD~Cdr~yH~~Cl~PpL~~i---P~g~W~C~~C~~~~~ 284 (490)
..|+.||.|+..||..|+ .|... ..+.|+|+.|.....
T Consensus 56 ~~mI~CD~C~~WfH~~CV--gi~~~~a~~~~~y~Cp~C~~~~g 96 (528)
T 3pur_A 56 FQWIGCDSCQTWYHFLCS--GLEQFEYYLYEKFFCPKCVPHTG 96 (528)
T ss_dssp TSEEECTTTCCEEEGGGT--TCCGGGTTTEEECCCTTTHHHHC
T ss_pred CCEEECCCCCcCCCCcCC--CCChhHhcCCCeEECcCCcCCCC
Confidence 478999999999999999 55542 236899999987543
No 60
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=95.18 E-value=0.0018 Score=68.58 Aligned_cols=49 Identities=22% Similarity=0.521 Sum_probs=37.1
Q ss_pred cccccccccC-CCCeEEecCCCCcccccccCCCcCCCC---CCCcccccccccccc
Q 011239 234 SCKICGRSET-ALKLLLCDDCEEAFHVTCYTPRIKIVP---SDEWFCHLCLKKKHK 285 (490)
Q Consensus 234 ~C~VC~~~g~-~~~LL~CD~Cdr~yH~~Cl~PpL~~iP---~g~W~C~~C~~~~~~ 285 (490)
+| +|+...+ ...|+.||.|+..||..|+ .|...+ .+.|+|+.|......
T Consensus 7 yC-iC~~~~d~~~~MIqCD~C~~WfH~~CV--gi~~~~~~~~~~y~C~~C~~~~~~ 59 (447)
T 3kv4_A 7 YC-LCRLPYDVTRFMIECDMCQDWFHGSCV--GVEEEKAADIDLYHCPNCEVLHGP 59 (447)
T ss_dssp ET-TTTEECCTTSCEEECTTTCCEEEHHHH--TCCHHHHTTEEECCCHHHHHHHCC
T ss_pred EE-eCCCcCCCCCCeEEcCCCCcccccccC--CcCcccccCCCEEECCCCccccCC
Confidence 44 7887643 4689999999999999999 555432 257999999876443
No 61
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.31 E-value=0.15 Score=42.58 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=32.3
Q ss_pred CccccccCCcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCcccc
Q 011239 179 SAVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 231 (490)
Q Consensus 179 ~ic~~e~~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c 231 (490)
.+|....+...+..+|.|...||..|+- .++..+|.++|+|+.|
T Consensus 20 ~vC~~~~~~~~ll~CD~C~~~~H~~Cl~---------Ppl~~~P~g~W~C~~C 63 (92)
T 2e6r_A 20 QVCSRGDEDDKLLFCDGCDDNYHIFCLL---------PPLPEIPRGIWRCPKC 63 (92)
T ss_dssp SSSCCSGGGGGCEECTTTCCEECSSSSS---------SCCSSCCSSCCCCHHH
T ss_pred ccCCCcCCCCCEEEcCCCCchhccccCC---------CCcccCCCCCcCCccC
Confidence 5665555555688899998888877653 2346789999999976
No 62
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=90.17 E-value=0.014 Score=51.82 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=40.4
Q ss_pred CCCChhhhhccc-CCCceeeeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 311 GEPSPIELMLTS-TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 311 ~~mnpie~~L~e-~~~y~~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
.+|+|.+++.|. ++..+.....+..|..+|.. ..++|+++|++||||.+-
T Consensus 15 ~~m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI 65 (135)
T 2yyn_A 15 VKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTI 65 (135)
T ss_dssp -CCCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHH
Confidence 468898888887 56666677788899999975 578999999999999874
No 63
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=88.79 E-value=0.11 Score=44.31 Aligned_cols=38 Identities=18% Similarity=0.607 Sum_probs=28.8
Q ss_pred CeEEecCCCCcccccccCCC------cCCCCC-CCcccccccccc
Q 011239 246 KLLLCDDCEEAFHVTCYTPR------IKIVPS-DEWFCHLCLKKK 283 (490)
Q Consensus 246 ~LL~CD~Cdr~yH~~Cl~Pp------L~~iP~-g~W~C~~C~~~~ 283 (490)
.|+.||.|..+||..|..-. |..+|. ..|.|+.|..+.
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 38899999999999998422 234463 379999998654
No 64
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=88.76 E-value=0.014 Score=49.64 Aligned_cols=104 Identities=18% Similarity=0.312 Sum_probs=63.8
Q ss_pred cCCccCCCCccccccCC----cccccccchhhhhhccCcccccCCccccCCC---CCCCCCC---CCccccccccccccc
Q 011239 171 ETGECSSSSAVMLETTG----KDLSAKDLCISILRNEGMLERFWPTQIRSSA---NDVDSGT---GCSGICSRSCKICGR 240 (490)
Q Consensus 171 d~~eCsss~ic~~e~~g----ed~s~~D~C~hil~~~gll~~~~p~~~~~~~---e~vp~g~---w~cp~c~~~C~VC~~ 240 (490)
+..+| .||+..+.. ++....-.|.|+|+..+|.. |......+| ..+.... -+-.+....|.+|..
T Consensus 6 ~~~~C---~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~--~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~ 80 (133)
T 4ap4_A 6 GTVSC---PICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD--SLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMD 80 (133)
T ss_dssp CSCBC---TTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHH--HHTTCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCC
T ss_pred CCCCC---cccChhhhCccccccCeEecCCCChhhHHHHHH--HHHhCCCCCCCCCcCccccccccccCCCCCCCCCCCC
Confidence 44568 898876643 23334557999999999876 544334444 2222111 111122457999986
Q ss_pred ccC----CCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 241 SET----ALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 241 ~g~----~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
.-. ....+..-.|...||..|+...+.. ...||.|+..-
T Consensus 81 ~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 123 (133)
T 4ap4_A 81 GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKI 123 (133)
T ss_dssp BHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTCCBC
T ss_pred ccccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCCCCCCcC
Confidence 432 1234456689999999999876653 24899998753
No 65
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.41 E-value=0.34 Score=40.52 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=31.0
Q ss_pred cccccCCcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCcccc
Q 011239 181 VMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 231 (490)
Q Consensus 181 c~~e~~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c 231 (490)
|...++++++-..|.|...|+..|+.- .+..+|.|+|+|+.|
T Consensus 28 C~vC~~~g~LL~CD~C~~~fH~~Cl~P---------pL~~~P~g~W~C~~C 69 (88)
T 1fp0_A 28 CRVCQKPGDLVMCNQCEFCFHLDCHLP---------ALQDVPGEEWSCSLC 69 (88)
T ss_dssp CSSSCSSSCCEECTTSSCEECTTSSST---------TCCCCCSSSCCCCSC
T ss_pred CcCcCCCCCEEECCCCCCceecccCCC---------CCCCCcCCCcCCccc
Confidence 333345668889999998888887643 346789999999855
No 66
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=87.80 E-value=0.1 Score=48.16 Aligned_cols=49 Identities=29% Similarity=0.762 Sum_probs=39.2
Q ss_pred cccccccccccCCCCeEEec--CCCCcccccccCCCcC-----C-CCCCCcccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCD--DCEEAFHVTCYTPRIK-----I-VPSDEWFCHLCLKKK 283 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD--~Cdr~yH~~Cl~PpL~-----~-iP~g~W~C~~C~~~~ 283 (490)
+.+|.+|+.++ .|++|| .|.+.|=..|+.-.+. + +....|.|-.|....
T Consensus 79 ~~yC~wC~~Gg---~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 79 QSYCTICCGGR---EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp BSSCTTTSCCS---EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred cceeeEecCCC---eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 35899999998 899999 7999999999863222 2 456789999998753
No 67
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=84.99 E-value=0.35 Score=38.15 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=30.9
Q ss_pred CccccccCCcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCcccc
Q 011239 179 SAVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 231 (490)
Q Consensus 179 ~ic~~e~~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c 231 (490)
.+|. ++.++...|.|...||..|+.- .+..+|.|+|+|+.|
T Consensus 16 ~vC~---~~~~ll~Cd~C~~~~H~~Cl~P---------~l~~~P~g~W~C~~C 56 (66)
T 2lri_C 16 GVCG---DGTDVLRCTHCAAAFHWRCHFP---------AGTSRPGTGLRCRSC 56 (66)
T ss_dssp TTTS---CCTTCEECSSSCCEECHHHHCT---------TTCCCCSSSCCCTTT
T ss_pred CCCC---CCCeEEECCCCCCceecccCCC---------ccCcCCCCCEECccc
Confidence 6664 5677888999998888777532 346789999998855
No 68
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=84.84 E-value=0.5 Score=44.09 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=33.1
Q ss_pred CccccccCCcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCcccc
Q 011239 179 SAVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 231 (490)
Q Consensus 179 ~ic~~e~~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c 231 (490)
..|...++++++-.+|.|...||..|+.- .+..+|.|+|.|+.|
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p---------~l~~~p~g~W~C~~C 46 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLP---------ALQDVPGEEWSCSLC 46 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTT---------CCSSCCCTTCCTTTT
T ss_pred CcCccCCCCCceeECCCCCchhccccCCC---------CcccCCCCCCCCcCc
Confidence 34555556778999999999998888643 346788999999866
No 69
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=84.75 E-value=0.31 Score=35.87 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=32.7
Q ss_pred CccccccCCcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCcccc
Q 011239 179 SAVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 231 (490)
Q Consensus 179 ~ic~~e~~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c 231 (490)
.+|....+.+++...|.|...||..++.- .+..+|.|+|+|+.|
T Consensus 4 ~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p---------~l~~~P~g~W~C~~C 47 (51)
T 1f62_A 4 KVCRKKGEDDKLILCDECNKAFHLFCLRP---------ALYEVPDGEWQCPAC 47 (51)
T ss_dssp TTTCCSSCCSCCEECTTTCCEECHHHHCT---------TCCSCCSSCCSCTTT
T ss_pred CCCCCCCCCCCEEECCCCChhhCcccCCC---------CcCCCCCCcEECcCc
Confidence 66666666678888999988888777532 245788899999865
No 70
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.44 E-value=0.67 Score=35.67 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=28.4
Q ss_pred CCcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCcccc
Q 011239 186 TGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 231 (490)
Q Consensus 186 ~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c 231 (490)
+++++...|.|...||..++.- .+..+|.|+|+|+.|
T Consensus 17 ~~g~ll~Cd~C~~~fH~~Cl~p---------pl~~~p~g~W~C~~C 53 (61)
T 1mm2_A 17 DGGELLCCDTCPSSYHIHCLNP---------PLPEIPNGEWLCPRC 53 (61)
T ss_dssp CCSSCBCCSSSCCCBCSSSSSS---------CCSSCCSSCCCCTTT
T ss_pred CCCCEEEcCCCCHHHcccccCC---------CcCcCCCCccCChhh
Confidence 4668888999998888777543 346788999999865
No 71
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=84.31 E-value=0.29 Score=39.12 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=37.0
Q ss_pred ccCCcccCCccCCCCcccccc--CCcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCcccc
Q 011239 165 KKTEVDETGECSSSSAVMLET--TGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 231 (490)
Q Consensus 165 ~~~~~~d~~eCsss~ic~~e~--~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c 231 (490)
|+.+..+...| .||.... ..+++...|.|...|+..|+-. ..+|+|+|+|+.|
T Consensus 9 ~~~~~~~~~~C---~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~-----------~~vP~g~W~C~~C 63 (71)
T 2ku3_A 9 MQSLIDEDAVC---SICMDGESQNSNVILFCDMCNLAVHQECYGV-----------PYIPEGQWLCRHC 63 (71)
T ss_dssp -CCCCCSSCSC---SSSCCCCCCSSSCEEECSSSCCEEEHHHHTC-----------SSCCSSCCCCHHH
T ss_pred cccCCCCCCCC---CCCCCCCCCCCCCEEECCCCCCccccccCCC-----------CcCCCCCcCCccC
Confidence 45555666667 7776543 5568888999988888777654 2478899999855
No 72
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=83.88 E-value=0.074 Score=45.71 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=35.3
Q ss_pred CChhhhhccc-CCCceeeeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 313 PSPIELMLTS-TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 313 mnpie~~L~e-~~~y~~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
.++.++.+|. ++..+.....+.+|..+|.. ...++|+++|++||+|.+-
T Consensus 10 ~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~--~~~pdY~~~I~~Pmdl~tI 59 (117)
T 3g0l_A 10 DDSKDLALCSMILTEMETHEDAWPFLLPVNL--KLVPGYKKVIKKPMDFSTI 59 (117)
T ss_dssp CCTTHHHHHHHHHHHHHTSTTCGGGSSCCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCchhhcCcCCh--hhcCChHHHcCCCCCHHHH
Confidence 3445555555 45555566777799999975 2467999999999999874
No 73
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=83.86 E-value=0.46 Score=36.62 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=27.3
Q ss_pred CCcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCcccc
Q 011239 186 TGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 231 (490)
Q Consensus 186 ~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c 231 (490)
.++++...|.|...||..++.- .+..+|.|+|+|+.|
T Consensus 19 ~~g~ll~CD~C~~~fH~~Cl~p---------~l~~~p~g~W~C~~C 55 (61)
T 2l5u_A 19 QGGEIILCDTCPRAYHMVCLDP---------DMEKAPEGKWSCPHC 55 (61)
T ss_dssp CCSSEEECSSSSCEEEHHHHCT---------TCCSCCCSSCCCTTG
T ss_pred CCCcEEECCCCChhhhhhccCC---------CCCCCCCCceECccc
Confidence 3567888888888887776544 245688999998855
No 74
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.17 E-value=0.65 Score=37.64 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=37.5
Q ss_pred cCCccCC--CCccccccCCcccccccchhhhhhccCcccccCCccccCCCCCCCCC-CCCcccc
Q 011239 171 ETGECSS--SSAVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSG-TGCSGIC 231 (490)
Q Consensus 171 d~~eCss--s~ic~~e~~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g-~w~cp~c 231 (490)
..+.|+. +.+|.....++++...|.|...||..++. .++..+|.| +|+|+.|
T Consensus 20 ~~w~C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~---------Ppl~~~P~g~~W~C~~C 74 (77)
T 2e6s_A 20 PEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLN---------PPLDKVPEEEYWYCPSC 74 (77)
T ss_dssp SSSCCSSSSCSSSCCCCCSTTEEECSSSCCEEETTSSS---------SCCSSCCCSSCCCCTTT
T ss_pred CCeECCCCCCcCcCCcCCCCCEEEcCCCCccccccccC---------CCccCCCCCCCcCCcCc
Confidence 3456654 35565555678888999999888877754 235678899 9999866
No 75
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.10 E-value=0.1 Score=45.35 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=35.3
Q ss_pred CChhhhhcccCCCceeeeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 313 PSPIELMLTSTVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 313 mnpie~~L~e~~~y~~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
..|....+..++..+.....+..|..+|.. ...++|+++|++||+|.+-
T Consensus 5 ~~pl~~~l~~il~~l~~~~~~~~F~~pv~~--~~~pdY~~iIk~PmdL~tI 53 (121)
T 2d9e_A 5 SSGFLILLRKTLEQLQEKDTGNIFSEPVPL--SEVPDYLDHIKKPMDFFTM 53 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCSSSSCCCT--TTCTTHHHHCSSCCCHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCccHhhCCcCCc--cccCCHHHHcCCCcCHHHH
Confidence 445554444455555556778899999964 2568999999999999874
No 76
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=81.85 E-value=1 Score=42.12 Aligned_cols=46 Identities=15% Similarity=0.315 Sum_probs=31.3
Q ss_pred ccccccC-CCCeEEecCCCCcccccccCCCcCC-CCC---CCccccccccc
Q 011239 237 ICGRSET-ALKLLLCDDCEEAFHVTCYTPRIKI-VPS---DEWFCHLCLKK 282 (490)
Q Consensus 237 VC~~~g~-~~~LL~CD~Cdr~yH~~Cl~PpL~~-iP~---g~W~C~~C~~~ 282 (490)
-||+.++ ...+|.|+.|.+.||..|+...... +|. -...|..|...
T Consensus 9 YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 9 DEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp --CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTT
T ss_pred EcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCC
Confidence 4666554 4489999999999999999754433 331 14568899764
No 77
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=81.66 E-value=0.18 Score=52.47 Aligned_cols=49 Identities=31% Similarity=0.815 Sum_probs=39.0
Q ss_pred cccccccccccCCCCeEEec--CCCCcccccccCCCcC-----C-CCCCCcccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCD--DCEEAFHVTCYTPRIK-----I-VPSDEWFCHLCLKKK 283 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD--~Cdr~yH~~Cl~PpL~-----~-iP~g~W~C~~C~~~~ 283 (490)
+.+|..|+.++ .+++|| .|.++|=..|+.-.+. . .....|.|-.|..+.
T Consensus 93 ~~yCr~C~~Gg---~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 93 QSYCSICCSGE---TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp BCSCTTTCCCS---SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred cccceEcCCCC---eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 35899999998 899999 9999999999864331 1 234689999998764
No 78
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.09 E-value=0.86 Score=34.29 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=27.3
Q ss_pred CcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCcccc
Q 011239 187 GKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 231 (490)
Q Consensus 187 ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c 231 (490)
+.++...|.|...||..++.- .+..+|.++|+|+.|
T Consensus 18 ~g~ll~Cd~C~~~~H~~Cl~p---------pl~~~p~g~W~C~~C 53 (56)
T 2yql_A 18 SGQLLMCDTCSRVYHLDCLDP---------PLKTIPKGMWICPRC 53 (56)
T ss_dssp SSCCEECSSSSCEECSSSSSS---------CCCSCCCSSCCCHHH
T ss_pred CCeEEEcCCCCcceECccCCC---------CcCCCCCCceEChhh
Confidence 457888899998888777543 345788899999865
No 79
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=79.89 E-value=0.79 Score=37.21 Aligned_cols=52 Identities=12% Similarity=-0.018 Sum_probs=34.7
Q ss_pred cCCccCCC--CccccccCCcccccccchhhhhhccCcccccCCccccCCCCCCCCCC-CCcccc
Q 011239 171 ETGECSSS--SAVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGT-GCSGIC 231 (490)
Q Consensus 171 d~~eCsss--~ic~~e~~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~-w~cp~c 231 (490)
..+.|.++ .+|....+.+.+...|.|...||..++.- .+..+|.|+ |+|+.|
T Consensus 20 ~~W~C~~C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~P---------pL~~~P~g~~W~C~~C 74 (77)
T 3shb_A 20 VNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDP---------PLSSVPSEDEWYCPEC 74 (77)
T ss_dssp TTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEETTTSSS---------CCSSCCSSSCCCCTTT
T ss_pred CCCCCCCCcCCccCCCCCCcceeEeCCCCCccCcccCCC---------cccCCCCCCceECcCc
Confidence 45677765 33444444466777888887777666542 356788998 999865
No 80
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=79.85 E-value=0.77 Score=36.41 Aligned_cols=52 Identities=12% Similarity=-0.013 Sum_probs=37.0
Q ss_pred cCCccCCC--CccccccCCcccccccchhhhhhccCcccccCCccccCCCCCCCCC-CCCcccc
Q 011239 171 ETGECSSS--SAVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSG-TGCSGIC 231 (490)
Q Consensus 171 d~~eCsss--~ic~~e~~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g-~w~cp~c 231 (490)
..+.|.++ .+|....+++++...|.|...||..++. .++..+|.| +|+|+.|
T Consensus 12 ~~w~C~~C~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~---------Ppl~~~P~g~~W~C~~C 66 (70)
T 3asl_A 12 VNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLD---------PPLSSVPSEDEWYCPEC 66 (70)
T ss_dssp TTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEEGGGSS---------SCCSSCCSSSCCCCTTT
T ss_pred CCeECCCCCCcCCCCcCCCCCEEEcCCCCCceecccCC---------CCcCCCCCCCCcCCcCc
Confidence 45777666 3444444677888899998888877753 245678889 9999865
No 81
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=79.17 E-value=0.84 Score=42.85 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=30.2
Q ss_pred ccccCCcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCcccc
Q 011239 182 MLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 231 (490)
Q Consensus 182 ~~e~~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c 231 (490)
...+.++++-.+|.|...||..|+.- .+..+|.|+|+|+.|
T Consensus 11 ~~C~~~g~ll~Cd~C~~~~H~~Cl~p---------~l~~~p~~~W~C~~C 51 (207)
T 3u5n_A 11 AVCQNGGDLLCCEKCPKVFHLTCHVP---------TLLSFPSGDWICTFC 51 (207)
T ss_dssp TTTCCCEEEEECSSSSCEECTTTSSS---------CCSSCCSSCCCCTTT
T ss_pred CCCCCCCceEEcCCCCCccCCccCCC---------CCCCCCCCCEEeCce
Confidence 33346678889999998888777543 346788999998843
No 82
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=78.35 E-value=0.91 Score=35.35 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=27.6
Q ss_pred CCcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCcccc
Q 011239 186 TGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 231 (490)
Q Consensus 186 ~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c 231 (490)
++.++...|.|...||..|+.- .+..+|.|+|+|+.|
T Consensus 16 ~~g~ll~CD~C~~~fH~~Cl~p---------pl~~~P~g~W~C~~C 52 (66)
T 1xwh_A 16 DGGELICCDGCPRAFHLACLSP---------PLREIPSGTWRCSSC 52 (66)
T ss_dssp CCSSCEECSSCCCEECTTTSSS---------CCSSCCSSCCCCHHH
T ss_pred CCCCEEEcCCCChhhcccccCC---------CcCcCCCCCeECccc
Confidence 4567888889988888777542 346788999998855
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=76.31 E-value=1.3 Score=40.72 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=29.1
Q ss_pred cCCcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCcccc
Q 011239 185 TTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 231 (490)
Q Consensus 185 ~~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c 231 (490)
+.++++-.+|.|...||..|+.- .+..+|.|+|+|+.|
T Consensus 11 ~~~g~ll~Cd~C~~~~H~~C~~p---------~l~~~p~~~W~C~~C 48 (184)
T 3o36_A 11 QNGGELLCCEKCPKVFHLSCHVP---------TLTNFPSGEWICTFC 48 (184)
T ss_dssp CCCSSCEECSSSSCEECTTTSSS---------CCSSCCSSCCCCTTT
T ss_pred CCCCeeeecCCCCcccCccccCC---------CCCCCCCCCEECccc
Confidence 46677889999998888877543 346788999998844
No 84
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=75.20 E-value=0.19 Score=43.67 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=34.5
Q ss_pred CChhhhhcccCCCceeeeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 313 PSPIELMLTSTVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 313 mnpie~~L~e~~~y~~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
..|....+..++..+.....+..|..+|.. ...++|+++|++||||.+-
T Consensus 11 ~~p~~~~l~~il~~l~~~~~~~~F~~pv~~--~~~pdY~~iIk~PmdL~tI 59 (123)
T 3hme_A 11 STPIQQLLEHFLRQLQRKDPHGFFAFPVTD--AIAPGYSMIIKHPMDFGTM 59 (123)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCSSSSCCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCccHhhcCCCCh--hhccCHHHHCCCCCCHHHH
Confidence 445544444455555556677789999964 2567999999999999874
No 85
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=74.61 E-value=0.15 Score=43.72 Aligned_cols=39 Identities=8% Similarity=0.126 Sum_probs=29.0
Q ss_pred CCCceeeeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 323 TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 323 ~~~y~~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
++..+.....+.+|..+|.. ...++|+++|++||+|.+-
T Consensus 24 il~~l~~~~~s~~F~~pv~~--~~~pdY~~~I~~Pmdl~tI 62 (116)
T 3nxb_A 24 VLDVVKAHKDSWPFLEPVDE--SYAPNYYQIIKAPMDISSM 62 (116)
T ss_dssp HHHHHHHSTTCGGGSSCCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred HHHHHHhCCCcHhhcCcCCh--hhccChHHHcCCCCCHHHH
Confidence 33444455667789999975 2467999999999999874
No 86
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=74.59 E-value=0.41 Score=53.57 Aligned_cols=53 Identities=26% Similarity=0.587 Sum_probs=34.5
Q ss_pred CceEecccccCCCCCCCCcccCCCccccCc----ccccCCCCceecccccCC---CCCCCCCCCCCCcHHH
Q 011239 383 GNWLQCKQVLEGTGDGVDGTSCGKWRRAPL----FEVQTDDWECFCAVQWDP---THADCAVPQELETDEV 446 (490)
Q Consensus 383 gnw~qC~~c~~~~~~~~~~i~C~kwrr~p~----~~~~~~~w~c~c~~~wdp---~h~dC~~P~el~~~~~ 446 (490)
.-|+||+. -.|+||||+|- ...+..++.|-+-..-+- .--.|+.|+++...++
T Consensus 91 ~~~~~c~~-----------~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (776)
T 4gut_A 91 PYWVQCTK-----------PECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPEDLRVLEV 150 (776)
T ss_dssp CCEEECCC-----------TTTCCEEECCTTCCCCHHHHHHCCTTCCCC-------CCGGGSCCCHHHHHT
T ss_pred cHhhhcCc-----------ccccchhhCCCcCCCChhhhheeeccCccCcccccccCCCCCCCcccchhhc
Confidence 34999992 25899999964 445567899987752211 1345888988655444
No 87
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=74.40 E-value=1.4 Score=33.59 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=27.0
Q ss_pred CcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCcccc
Q 011239 187 GKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 231 (490)
Q Consensus 187 ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c 231 (490)
++++...|.|...|+..|+.- .+..+|.|+|+|+.|
T Consensus 14 ~g~ll~Cd~C~~~fH~~Cl~p---------pl~~~p~g~W~C~~C 49 (60)
T 2puy_A 14 SGQLLMCDTCSRVYHLDCLDP---------PLKTIPKGMWICPRC 49 (60)
T ss_dssp CSSCEECSSSSCEECGGGSSS---------CCSSCCCSCCCCHHH
T ss_pred CCcEEEcCCCCcCEECCcCCC---------CcCCCCCCceEChhc
Confidence 467888889988888776542 345788899999865
No 88
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=74.03 E-value=0.76 Score=38.03 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=32.5
Q ss_pred cCCccCCCCcccccc--CCcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCcccc
Q 011239 171 ETGECSSSSAVMLET--TGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 231 (490)
Q Consensus 171 d~~eCsss~ic~~e~--~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c 231 (490)
+...| .+|.... ..+++..+|.|...|+..|+.. ..+|+|+|+|+.|
T Consensus 24 ~~~~C---~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p-----------~~vP~g~W~C~~C 72 (88)
T 2l43_A 24 EDAVC---SICMDGESQNSNVILFCDMCNLAVHQECYGV-----------PYIPEGQWLCRHC 72 (88)
T ss_dssp CCCCC---SSCCSSSSCSEEEEEECSSSCCCCCHHHHTC-----------SSCCSSCCCCHHH
T ss_pred CCCcC---CcCCCCCCCCCCCEEECCCCCchhhcccCCC-----------CccCCCceECccc
Confidence 44456 6665433 4458888899988888777654 2378899998855
No 89
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=72.35 E-value=1.7 Score=42.16 Aligned_cols=50 Identities=12% Similarity=-0.004 Sum_probs=33.2
Q ss_pred CccCC--CCccccccCCcccccccchhhhhhccCcccccCCccccCCCCCCCCC-CCCcccc
Q 011239 173 GECSS--SSAVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSG-TGCSGIC 231 (490)
Q Consensus 173 ~eCss--s~ic~~e~~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g-~w~cp~c 231 (490)
+.|.. |.+|.....++++-.+|.|...||..|+- .++..+|.| +|+|+.|
T Consensus 170 w~C~~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~---------PPL~~vP~G~~W~Cp~C 222 (226)
T 3ask_A 170 RLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLD---------PPLSSVPSEDEWYCPEC 222 (226)
T ss_dssp SCCTTTSCSSSCCCCC--CCEECSSSCCEECSCC-----------CCCCSCCSSSCCCCGGG
T ss_pred EecCCCCCcCCCCCCCCCCeEEcCCCCcceeCccCC---------CCcccCCCCCCCCCcCC
Confidence 44443 45565555577888899998888877753 345678899 9999866
No 90
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=71.93 E-value=0.35 Score=44.30 Aligned_cols=41 Identities=7% Similarity=0.011 Sum_probs=27.9
Q ss_pred CCCceeeeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 323 TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 323 ~~~y~~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
++..+.....+..|..+|..-....++|+++|++||+|.+-
T Consensus 29 il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI 69 (166)
T 3fkm_X 29 LILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCI 69 (166)
T ss_dssp HHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHH
T ss_pred HHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHH
Confidence 34444455667789999864222368999999999999874
No 91
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=69.63 E-value=0.33 Score=42.66 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=35.0
Q ss_pred CChhhhhcccCCCceeeeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 313 PSPIELMLTSTVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 313 mnpie~~L~e~~~y~~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
+.+....+..++..+.....+..|..+|.. ...++|+++|++||+|.+-
T Consensus 11 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~--~~~pdY~~iI~~PmdL~tI 59 (135)
T 3rcw_A 11 LTPLTVLLRSVLDQLQDKDPARIFAQPVSL--KEVPDYLDHIKHPMDFATM 59 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCSSSSCCCT--TTCTTHHHHCSSCCCHHHH
T ss_pred chHHHHHHHHHHHHHHhCCcchhhcCCCCh--hhcCCHHHHhCCCCCHHHH
Confidence 445444444455555566778899999975 2567999999999999874
No 92
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=68.69 E-value=0.16 Score=44.00 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=24.8
Q ss_pred eecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 330 VRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 330 Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
...+..|..+|.. ...++|+++|++||||.+-
T Consensus 23 ~~~~~~F~~PVd~--~~~pdY~~iIk~PMDL~tI 54 (117)
T 2i7k_A 23 KDPSAFFSFPVTD--FIAPGYSMIIKHPMDFSTM 54 (117)
T ss_dssp SSGGGTSSSCCCT--TTSSSHHHHCSCCCCHHHH
T ss_pred CcccHHhcCCCCc--cccCCHHHHhCCCCCHHHH
Confidence 3455678888864 3467999999999999874
No 93
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=68.43 E-value=2.3 Score=30.59 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=31.6
Q ss_pred ccccccccccCC-CCeEEecCCCCcccccccCCCcCCCCCCCccccccccc
Q 011239 233 RSCKICGRSETA-LKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 233 ~~C~VC~~~g~~-~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
..|.+|...-.. +....-..|...||..|+..-+.. ...||.|+..
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 52 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLT 52 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCE
Confidence 468888865432 234444569999999999776654 3479999853
No 94
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.34 E-value=1.7 Score=35.77 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=33.3
Q ss_pred cCCccCCCCccccccC--CcccccccchhhhhhccCcccccCCccccCCCC----CCCCCCCCcccc
Q 011239 171 ETGECSSSSAVMLETT--GKDLSAKDLCISILRNEGMLERFWPTQIRSSAN----DVDSGTGCSGIC 231 (490)
Q Consensus 171 d~~eCsss~ic~~e~~--ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e----~vp~g~w~cp~c 231 (490)
+...| .+|..... ...+..+|.|...||..|+.- .+. .+|.|.|+|+.|
T Consensus 15 ~~~~C---~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~P---------pl~~~~~~~p~g~W~C~~C 69 (88)
T 1wev_A 15 MGLAC---VVCRQMTVASGNQLVECQECHNLYHQDCHKP---------QVTDKEVNDPRLVWYCARC 69 (88)
T ss_dssp HCCSC---SSSCCCCCCTTCCEEECSSSCCEEETTTSSS---------CCCHHHHHCTTCCCCCHHH
T ss_pred CCCcC---CCCCCCCCCCCCceEECCCCCCeEcCccCCC---------cccccccCCCCCCeeCccc
Confidence 33456 66665332 367888999998888887543 233 378999999855
No 95
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=66.57 E-value=2.1 Score=33.07 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=26.9
Q ss_pred CcccCCccCCCCccccccCCcccccccchhhhhhccCccc
Q 011239 168 EVDETGECSSSSAVMLETTGKDLSAKDLCISILRNEGMLE 207 (490)
Q Consensus 168 ~~~d~~eCsss~ic~~e~~ged~s~~D~C~hil~~~gll~ 207 (490)
+.++..+| .||+..+...+....-.|.|+||..||..
T Consensus 11 ~~~~~~~C---~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~ 47 (78)
T 2ect_A 11 HVGSGLEC---PVCKEDYALGESVRQLPCNHLFHDSCIVP 47 (78)
T ss_dssp TSSSSCCC---TTTTSCCCTTSCEEECTTSCEEETTTTHH
T ss_pred cCCCCCCC---eeCCccccCCCCEEEeCCCCeecHHHHHH
Confidence 34455677 99998877655433345999999999877
No 96
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=65.74 E-value=0.39 Score=43.45 Aligned_cols=41 Identities=7% Similarity=0.037 Sum_probs=30.7
Q ss_pred CCCceeeeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 323 TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 323 ~~~y~~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
++..+.....+.+|..+|..-....++|+++|++||+|.+-
T Consensus 40 il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI 80 (154)
T 4alg_A 40 VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTI 80 (154)
T ss_dssp HHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHH
T ss_pred HHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHH
Confidence 44455566778899999975222467999999999999874
No 97
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=65.09 E-value=3.9 Score=34.20 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=33.0
Q ss_pred CcccCCccCCCCccccccCCcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCcccc
Q 011239 168 EVDETGECSSSSAVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 231 (490)
Q Consensus 168 ~~~d~~eCsss~ic~~e~~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c 231 (490)
+.+|...| ||......+.+..+|.|..-|+..|+-. ..+.+|+ .|+|+.|
T Consensus 24 ~~~d~vrC----iC~~~~~~~~mi~Cd~C~~w~H~~C~~~---------~~~~~p~-~w~C~~C 73 (98)
T 2lv9_A 24 YGTDVTRC----ICGFTHDDGYMICCDKCSVWQHIDCMGI---------DRQHIPD-TYLCERC 73 (98)
T ss_dssp CCCCBCCC----TTSCCSCSSCEEEBTTTCBEEETTTTTC---------CTTSCCS-SBCCTTT
T ss_pred CCCCCEEe----ECCCccCCCcEEEcCCCCCcCcCcCCCC---------CccCCCC-CEECCCC
Confidence 33455556 6777666778888999988888777543 1234443 6888754
No 98
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=63.61 E-value=0.57 Score=40.97 Aligned_cols=41 Identities=10% Similarity=0.021 Sum_probs=29.3
Q ss_pred CCCceeeeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 323 TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 323 ~~~y~~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
++..+.....+..|..+|..-....++|+++|++||||.+-
T Consensus 29 il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI 69 (127)
T 2oss_A 29 VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTI 69 (127)
T ss_dssp HHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHH
T ss_pred HHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHH
Confidence 33444455677789999863112467999999999999874
No 99
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.50 E-value=2.8 Score=33.30 Aligned_cols=32 Identities=25% Similarity=0.674 Sum_probs=23.7
Q ss_pred eEEecCCCCcccccccCCCcCCCCCCCccccccccc
Q 011239 247 LLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 247 LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
.+.--.|...||..|+..-|..-. .||.|+..
T Consensus 42 ~~~~~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~ 73 (81)
T 2ecl_A 42 VVVWGECNHSFHNCCMSLWVKQNN----RCPLCQQD 73 (81)
T ss_dssp CEEEETTSCEEEHHHHHHHTTTCC----BCTTTCCB
T ss_pred EEEeCCCCCccChHHHHHHHHhCC----CCCCcCCC
Confidence 333347999999999987666532 79999865
No 100
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=62.67 E-value=1.6 Score=36.99 Aligned_cols=37 Identities=22% Similarity=0.535 Sum_probs=28.8
Q ss_pred ccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 233 RSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 233 ~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
.+|.+|++.+ |+.|+..||+.|+.++ .|.|..|...+
T Consensus 8 ~~C~~C~~~~-------C~~C~~c~~~~~~~~~-------~~~~~~c~~~~ 44 (117)
T 4bbq_A 8 RKCKACVQGE-------CGVCHYCRDMKKFGGP-------GRMKQSCVLRQ 44 (117)
T ss_dssp SCSHHHHSCC-------CSCSHHHHHSGGGTSC-------CCSCCCCGGGC
T ss_pred CcCcCcCCcC-------CCCCCCCcCCcccCCC-------Cccccchhhee
Confidence 4677888653 9999999999998654 58888887543
No 101
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.47 E-value=1.4 Score=35.58 Aligned_cols=50 Identities=26% Similarity=0.506 Sum_probs=31.9
Q ss_pred cccccccccccCC-CCeEE---ecCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 232 SRSCKICGRSETA-LKLLL---CDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 232 ~~~C~VC~~~g~~-~~LL~---CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
.+.|.+|.....+ +.++. |.+.-..||..|+..-|..- +...|+.|+...
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~--~~~~CplCr~~~ 68 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS--DTRCCELCKYEF 68 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH--CCSBCSSSCCBC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC--CCCCCCCCCCee
Confidence 3578899865432 34432 22224899999997765532 346899998764
No 102
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=62.40 E-value=2.7 Score=33.10 Aligned_cols=44 Identities=11% Similarity=-0.015 Sum_probs=29.5
Q ss_pred CccccccCCcccccccchhhhhhccCcccccCCccccCCCCCCCCCCCCcccc
Q 011239 179 SAVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 231 (490)
Q Consensus 179 ~ic~~e~~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c 231 (490)
.+|....+++.....|.|..-||..|+-. ....++.+.|+|+.|
T Consensus 22 ~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~---------~~~~~~~~~w~C~~C 65 (75)
T 2k16_A 22 PGCNKPDDGSPMIGCDDCDDWYHWPCVGI---------MAAPPEEMQWFCPKC 65 (75)
T ss_dssp TTTTBCCSSCCEEECSSSSSEEEHHHHTC---------SSCCCSSSCCCCTTT
T ss_pred CCCCCCCCCCCEEEcCCCCcccccccCCC---------CccCCCCCCEEChhc
Confidence 67766656667888888887777665433 223445688998855
No 103
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=62.13 E-value=2.6 Score=30.28 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=25.2
Q ss_pred ccCCccCCCCccccccCCccccc-ccchhhhhhccCccc
Q 011239 170 DETGECSSSSAVMLETTGKDLSA-KDLCISILRNEGMLE 207 (490)
Q Consensus 170 ~d~~eCsss~ic~~e~~ged~s~-~D~C~hil~~~gll~ 207 (490)
++..+| .||+.++..++... ...|.|+|+..++..
T Consensus 3 ~~~~~C---~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~ 38 (55)
T 1iym_A 3 DDGVEC---AVCLAELEDGEEARFLPRCGHGFHAECVDM 38 (55)
T ss_dssp CCSCCC---TTTCCCCCTTSCCEECSSSCCEECTTHHHH
T ss_pred CCCCcC---ccCCccccCCCceEECCCCCCcccHHHHHH
Confidence 345678 89998877544333 335999999999876
No 104
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=60.76 E-value=0.93 Score=38.51 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=26.6
Q ss_pred eeeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 328 TSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 328 ~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
.....+..|..+|.. ...++|+++|++||+|.+-
T Consensus 20 ~~~~~~~~F~~pvd~--~~~pdY~~iIk~PmdL~tI 53 (112)
T 3d7c_A 20 KSHPSAWPFMEPVKK--SEAPDYYEVIRFPIDLKTM 53 (112)
T ss_dssp HHSGGGGGGSSCCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred HcCCCchhhcCCCCc--ccccCHHHHccCCcCHHHH
Confidence 344567789999864 2568999999999999874
No 105
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=60.44 E-value=0.38 Score=41.67 Aligned_cols=38 Identities=11% Similarity=0.129 Sum_probs=28.5
Q ss_pred CCceeeeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 324 VPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 324 ~~y~~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
+..+.....+.+|..+|.. ...++|+++|++||+|.+-
T Consensus 19 l~~l~~~~~s~~F~~pv~~--~~~pdY~~~I~~PmdL~tI 56 (123)
T 3q2e_A 19 VNLIFQCEDSEPFRQPVDL--VEYPDYRDIIDTPMDFGTV 56 (123)
T ss_dssp HHHHHTSGGGGGGSSCCCT--TTCTTHHHHCSSCCCHHHH
T ss_pred HHHHHhCCCcHhhcCCCCh--hhcCCHHHHcCCCCCHHHH
Confidence 3344455667789999975 2467999999999999874
No 106
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.33 E-value=1.2 Score=34.38 Aligned_cols=47 Identities=23% Similarity=0.523 Sum_probs=32.2
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
+..|.+|...-.....+..-.|...||..|+..-+.. ...||.|+..
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~ 69 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRAD 69 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCc
Confidence 3578999975433334444469999999999765443 2479999864
No 107
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=60.17 E-value=0.64 Score=40.31 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=25.4
Q ss_pred eeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 329 SVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 329 ~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
+...+..|..+|.. ...++|+++|++||||.+-
T Consensus 35 g~~~s~~F~~pv~~--~~~pdY~~iI~~PmdL~tI 67 (124)
T 3mb4_A 35 GRRLSAIFLRLPSR--SELPDYYLTIKKPMDMEKI 67 (124)
T ss_dssp SCBGGGGGSCCCCT--TTCHHHHHHCSSCCCHHHH
T ss_pred CCcccHHhhcCCCc--cccCCHHHHcCCCCCHHHH
Confidence 35566789988764 2457899999999999874
No 108
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.75 E-value=2.5 Score=32.59 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=25.7
Q ss_pred ccCCccCCCCccccccCCcccccccchhhhhhccCccc
Q 011239 170 DETGECSSSSAVMLETTGKDLSAKDLCISILRNEGMLE 207 (490)
Q Consensus 170 ~d~~eCsss~ic~~e~~ged~s~~D~C~hil~~~gll~ 207 (490)
++..+| .||+.++...+....-.|.|+||..|+..
T Consensus 21 ~~~~~C---~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~ 55 (75)
T 1x4j_A 21 SEQTLC---VVCMCDFESRQLLRVLPCNHEFHAKCVDK 55 (75)
T ss_dssp SSCCEE---TTTTEECCBTCEEEEETTTEEEETTHHHH
T ss_pred CCCCCC---eECCcccCCCCeEEEECCCCHhHHHHHHH
Confidence 345567 99998877654433345999999999877
No 109
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.41 E-value=0.86 Score=39.48 Aligned_cols=32 Identities=6% Similarity=0.013 Sum_probs=24.5
Q ss_pred eecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 330 VRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 330 Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
...+..|..+|.. ...++|+++|++||||.+-
T Consensus 34 ~~~s~~F~~pv~~--~~~pdY~~iIk~PmdL~tI 65 (123)
T 2dat_A 34 RQLSEVFIQLPSR--KELPEYYELIRKPVDFKKI 65 (123)
T ss_dssp CBSGGGGTSCCCT--TTSCHHHHHCSSCCCHHHH
T ss_pred CeeeHHhcCCCCc--ccCCCHHHHcCCCCCHHHH
Confidence 3456688888753 3467899999999998874
No 110
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=59.40 E-value=4.5 Score=33.35 Aligned_cols=36 Identities=28% Similarity=0.663 Sum_probs=27.4
Q ss_pred CCCCCCCCcccccccccccccc--cCCCCeEEecC--CCCcccccccC
Q 011239 220 DVDSGTGCSGICSRSCKICGRS--ETALKLLLCDD--CEEAFHVTCYT 263 (490)
Q Consensus 220 ~vp~g~w~cp~c~~~C~VC~~~--g~~~~LL~CD~--Cdr~yH~~Cl~ 263 (490)
+||...|. ..|.+|+.. | --+-|.. |.++||..|-.
T Consensus 10 NIp~~R~~-----l~C~iC~~~~~G---AciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 10 NIPPARWK-----LTCYLCKQKGVG---ASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCCCCCC-----CCBTTTTBCCSS---CEEECSCTTTCCEEEHHHHH
T ss_pred CCChHHhc-----CCCcCCCCCCCc---EeEecCCCCCCCcCcHHHHH
Confidence 46666774 469999853 5 6788875 99999999974
No 111
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=59.40 E-value=1 Score=34.45 Aligned_cols=50 Identities=22% Similarity=0.422 Sum_probs=32.8
Q ss_pred cccccccccccCCCCeEEe--cCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 232 SRSCKICGRSETALKLLLC--DDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~C--D~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
...|.+|...+++..++-| .+.-+.||..|+..-+.. .+.+.|+.|+...
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~--~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI--SRNTACQICGVVY 57 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCBC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh--CCCCccCCCCCee
Confidence 3579999876544333444 233348999999876643 2468999998653
No 112
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=58.92 E-value=3.8 Score=31.63 Aligned_cols=47 Identities=21% Similarity=0.458 Sum_probs=31.0
Q ss_pred ccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 233 RSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 233 ~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
..|.+|...-.....+.--.|...||..|+...+.. ...||.|+..-
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~ 62 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSL 62 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCC
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCcc
Confidence 468899765432223222358899999999765543 24899998753
No 113
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=58.63 E-value=1.5 Score=33.09 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=31.6
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
...|.+|...-.....+..-.|...||..|+...+..- ..||.|+..-
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~ 61 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN----KKCPICRVDI 61 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCSBS
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC----CCCcCcCccc
Confidence 35688997644332334444699999999997654432 3599998653
No 114
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.26 E-value=3.1 Score=33.36 Aligned_cols=47 Identities=21% Similarity=0.450 Sum_probs=35.0
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
.+.|.+|...-. .-+.|..|...||..|+..-|.... .=.||.|+..
T Consensus 15 i~~C~IC~~~i~--~g~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~ 61 (74)
T 2ct0_A 15 VKICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDY 61 (74)
T ss_dssp SCBCSSSCCBCS--SSEECSSSCCEECHHHHHHHSTTCS--SCCCTTTCSC
T ss_pred CCcCcchhhHcc--cCCccCCCCchhhHHHHHHHHHhcC--CCCCCCCcCc
Confidence 457999997664 3457889999999999987665542 2479999854
No 115
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=58.10 E-value=0.83 Score=40.18 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=25.6
Q ss_pred eeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 329 SVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 329 ~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
+...+.+|..+|.. ...++|+++|++||+|.+-
T Consensus 37 g~~~s~~F~~pv~~--~~~PdY~~iIk~PMdL~tI 69 (130)
T 3k2j_A 37 GQLIAEPFYHLPSK--KKYPDYYQQIKMPISLQQI 69 (130)
T ss_dssp SCBTTGGGSSCCCT--TTCHHHHHHCSSCCCHHHH
T ss_pred CCCccHhhcCCCCh--hhCccHHHHcCCCCCHHHH
Confidence 44566789988764 3557899999999999874
No 116
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=58.10 E-value=1.1 Score=38.69 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=27.5
Q ss_pred ceeeeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 326 YTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 326 y~~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
.+.....+..|..+|.. ...++|+++|++||+|.+-
T Consensus 24 ~l~~~~~a~~F~~pvd~--~~~pdY~~iIk~PmdL~tI 59 (121)
T 1e6i_A 24 ELQNHAAAWPFLQPVNK--EEVPDYYDFIKEPMDLSTM 59 (121)
T ss_dssp HHHHSTTCGGGSSCCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred HHHcCCCchhhCCCCCh--hhCcCHHHHcCCCCCHHHH
Confidence 33345667789999974 3568999999999999874
No 117
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=57.81 E-value=2.5 Score=32.42 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=30.0
Q ss_pred Cccccc--cCCcccccccchhhhhhccCcccccCCccccCCCCC--C-CCCCCCcccc
Q 011239 179 SAVMLE--TTGKDLSAKDLCISILRNEGMLERFWPTQIRSSAND--V-DSGTGCSGIC 231 (490)
Q Consensus 179 ~ic~~e--~~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~--v-p~g~w~cp~c 231 (490)
.+|... ....++...|.|...||..|+.- .+.. + |.+.|+|+.|
T Consensus 10 ~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p---------~l~~~~~~p~~~W~C~~C 58 (66)
T 2yt5_A 10 TICQEEYSEAPNEMVICDKCGQGYHQLCHTP---------HIDSSVIDSDEKWLCRQC 58 (66)
T ss_dssp SSSCCCCCBTTBCEEECSSSCCEEETTTSSS---------CCCHHHHHSSCCCCCHHH
T ss_pred CCCCCCCCCCCCCEEECCCCChHHHhhhCCC---------cccccccCCCCCEECCCC
Confidence 666543 23477888999998888887654 1222 3 7899998855
No 118
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=57.78 E-value=1.2 Score=40.50 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=25.6
Q ss_pred eecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 330 VRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 330 Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
...+.+|..+|.. ...++|+++|++||+|.+-
T Consensus 45 ~~~s~~F~~PVd~--~~~PdY~~iIk~PMDL~tI 76 (158)
T 3uv4_A 45 VPDSWPFHHPVNK--KFVPDYYKVIVNPMDLETI 76 (158)
T ss_dssp STTCGGGTSCCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred CCCchhhcCcCCh--hhcccHHHHcCCccCHHHH
Confidence 4556689999975 2467999999999999874
No 119
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=57.74 E-value=1 Score=39.07 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=24.7
Q ss_pred eeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 329 SVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 329 ~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
+...+.+|..+|.. ...++|+++|++||+|.+-
T Consensus 29 g~~~s~~F~~pv~~--~~~pdY~~iIk~PmdL~tI 61 (126)
T 3mqm_A 29 RQALAAPLLNLPPK--KKNADYYEKISDPLDLITI 61 (126)
T ss_dssp CCBTTGGGSSCCCG--GGCTTHHHHCSSCCCHHHH
T ss_pred CCChhHHhcCCCCc--ccCCCHHHHcCCCCCHHHH
Confidence 33456678888754 2457899999999999874
No 120
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=57.29 E-value=0.86 Score=39.26 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=25.0
Q ss_pred eeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 329 SVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 329 ~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
+...+..|..+|.. ...++|+++|++||+|.+-
T Consensus 28 g~~~s~~F~~~~~~--~~~pdY~~iIk~PmdL~tI 60 (120)
T 3ljw_A 28 GRLISELFQKLPSK--VQYPDYYAIIKEPIDLKTI 60 (120)
T ss_dssp SCBTTGGGSSCCCT--TTCHHHHHHCSSCCCHHHH
T ss_pred CCcccHHhcCCCCc--ccCCChHHHcCCCCCHHHH
Confidence 44556688888754 2457899999999999874
No 121
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=56.72 E-value=2.1 Score=34.57 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=31.6
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
+..|.+|...-.....+..-.|...||..|+...+..- -.||.|+..
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~ 86 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS----GTCPVCRCM 86 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT----CBCTTTCCB
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC----CcCcCcCcc
Confidence 35799998654332333333499999999997765432 389999864
No 122
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.43 E-value=2.7 Score=37.03 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=21.2
Q ss_pred eeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 329 SVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 329 ~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
....+..|..|+| +|+++|++||||.+-
T Consensus 26 ~~~~~~~F~~P~p-------dY~~iIk~PmDL~tI 53 (131)
T 2dkw_A 26 TDKRFNIFSKPVS-------DYLEVIKEPMDLSTV 53 (131)
T ss_dssp HSGGGCTTSSCCS-------SCTTSCSSCCCHHHH
T ss_pred hCccchhhcCcCc-------cHHhHcCCCcCHHHH
Confidence 3445567777644 699999999999874
No 123
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=56.09 E-value=0.63 Score=40.86 Aligned_cols=39 Identities=8% Similarity=0.087 Sum_probs=30.0
Q ss_pred CCCceeeeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 323 TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 323 ~~~y~~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
++..+.....+..|..+|.. ...++|+++|++||+|.+-
T Consensus 29 il~~l~~~~~s~~F~~pv~~--~~~pdY~~iI~~Pmdl~tI 67 (135)
T 3mb3_A 29 LLNLIFQCEDSEPFRQPVDL--LEYPDYRDIIDTPMDFATV 67 (135)
T ss_dssp HHHHHHHSGGGGGGSSCCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred HHHHHHhCCCChhhcCCCCh--hhCCCHHHHhCCCcCHHHH
Confidence 44455556677899999975 3567999999999999874
No 124
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=55.56 E-value=0.26 Score=42.45 Aligned_cols=31 Identities=10% Similarity=0.042 Sum_probs=23.2
Q ss_pred CCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 333 GKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 333 G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
+.+|..+|..-....++|+++|++||+|.+-
T Consensus 30 a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI 60 (120)
T 3jvl_A 30 AWPFYKPVDVEALGLHDYCDIIKHPMDMSTI 60 (120)
T ss_dssp HGGGSSCCCHHHHTCTTHHHHCSSCCCHHHH
T ss_pred cchhcCCCCchhcCCCCHHHHcCCCCCHHHH
Confidence 4579999874111257899999999999874
No 125
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=55.24 E-value=1.3 Score=38.76 Aligned_cols=33 Identities=9% Similarity=0.122 Sum_probs=25.4
Q ss_pred eeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 329 SVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 329 ~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
....+.+|..+|.. ...++|+++|++||||.+-
T Consensus 24 ~~~~~~~F~~pv~~--~~~pdY~~iI~~PmdL~tI 56 (130)
T 3dai_A 24 IDKRFRVFTKPVDP--DEVPDYVTVIKQPMDLSSV 56 (130)
T ss_dssp TSGGGGGGSSCCCT--TTCTTHHHHCSSCCCHHHH
T ss_pred cCCccHhhcCCCCh--hhcCCHHHHcCCCCCHHHH
Confidence 33456689998864 2467999999999999874
No 126
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=55.12 E-value=0.89 Score=39.75 Aligned_cols=33 Identities=6% Similarity=0.017 Sum_probs=25.0
Q ss_pred eeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 329 SVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 329 ~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
+...+..|..+|.. ...++|+++|++||+|.+-
T Consensus 32 ~~~~s~~F~~pv~~--~~~pdY~~iIk~PmdL~tI 64 (129)
T 2grc_A 32 GRQLSEVFIQLPSR--KELPEYYELIRKPVDFKKI 64 (129)
T ss_dssp CCBGGGGGSSCCCT--TTCHHHHHHCSSCCCHHHH
T ss_pred cCeeeHHhcCCCCc--ccCCCHHHHcCCCCCHHHH
Confidence 34456688888753 3467899999999999874
No 127
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.67 E-value=4.7 Score=29.82 Aligned_cols=40 Identities=10% Similarity=-0.023 Sum_probs=27.3
Q ss_pred cccccCCcccCCccCCCCccccccCCcccccccchhhhhhccCccc
Q 011239 162 SASKKTEVDETGECSSSSAVMLETTGKDLSAKDLCISILRNEGMLE 207 (490)
Q Consensus 162 s~s~~~~~~d~~eCsss~ic~~e~~ged~s~~D~C~hil~~~gll~ 207 (490)
+.......++..+| .||+..+..-.+. .|.|+|+..||..
T Consensus 10 ~~~~~~~~~~~~~C---~IC~~~~~~p~~~---~CgH~fC~~Ci~~ 49 (63)
T 2ysj_A 10 SGQFVNKLQEEVIC---PICLDILQKPVTI---DCGHNFCLKCITQ 49 (63)
T ss_dssp CCCCCCCCCCCCBC---TTTCSBCSSCEEC---TTSSEECHHHHHH
T ss_pred hHHHHHhCccCCCC---CcCCchhCCeEEe---CCCCcchHHHHHH
Confidence 33444555666778 8998776642222 7999999999876
No 128
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=53.36 E-value=2.5 Score=35.14 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=23.6
Q ss_pred ecCCCCcccccccCCCcCCCC-CCCcccccccccc
Q 011239 250 CDDCEEAFHVTCYTPRIKIVP-SDEWFCHLCLKKK 283 (490)
Q Consensus 250 CD~Cdr~yH~~Cl~PpL~~iP-~g~W~C~~C~~~~ 283 (490)
--.|...||..|+..-|..-. ...-.||.|+...
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred cCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 456889999999976553211 2345799998754
No 129
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=52.01 E-value=2.5 Score=31.92 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=26.7
Q ss_pred CCcccCCccCCCCccccccCCcccccccchhhhhhccCccc
Q 011239 167 TEVDETGECSSSSAVMLETTGKDLSAKDLCISILRNEGMLE 207 (490)
Q Consensus 167 ~~~~d~~eCsss~ic~~e~~ged~s~~D~C~hil~~~gll~ 207 (490)
.+.++..+| .||+..+...+....-.|.|+||..|+..
T Consensus 9 ~~~~~~~~C---~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~ 46 (69)
T 2kiz_A 9 TEEDTEEKC---TICLSILEEGEDVRRLPCMHLFHQVCVDQ 46 (69)
T ss_dssp CSTTCCCSB---TTTTBCCCSSSCEEECTTSCEEEHHHHHH
T ss_pred CcCCCCCCC---eeCCccccCCCcEEEeCCCCHHHHHHHHH
Confidence 344455677 99988776544434446999999999876
No 130
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=51.56 E-value=2.8 Score=29.96 Aligned_cols=46 Identities=28% Similarity=0.526 Sum_probs=30.8
Q ss_pred cccccccccc-CCCCeEEecCCCCcccccccCCCcCCCCCCCccccccccc
Q 011239 233 RSCKICGRSE-TALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 233 ~~C~VC~~~g-~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
..|.+|...- +.+..+..-.|...||..|+..-+... ..||.|+..
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 52 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGP 52 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCS
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCc
Confidence 4688888653 222345556789999999996544332 579999753
No 131
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.92 E-value=2.1 Score=32.77 Aligned_cols=46 Identities=24% Similarity=0.472 Sum_probs=30.2
Q ss_pred ccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCccccccccc
Q 011239 233 RSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 233 ~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
..|.+|...-.....+.--.|...||..|+...+... -.||.|+..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~ 61 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMP 61 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCB
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCcc
Confidence 4688998764322222222589999999997654432 279999864
No 132
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=50.71 E-value=2.3 Score=37.24 Aligned_cols=31 Identities=10% Similarity=0.042 Sum_probs=23.3
Q ss_pred CCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 333 GKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 333 G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
+..|..+|..-....++|+++|++||+|.+-
T Consensus 43 a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI 73 (130)
T 2ouo_A 43 AWPFYKPVDVEALGLHDYCDIIKHPMDMSTI 73 (130)
T ss_dssp HGGGSSCCCTTSTTCTTHHHHCSSCCCHHHH
T ss_pred HHHhcCCCChhhccCCcHHHHcCCCCCHHHH
Confidence 4579988854112367899999999999874
No 133
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=50.68 E-value=1.2 Score=38.23 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=24.6
Q ss_pred ecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 331 RVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 331 r~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
..+.+|..+|...-...++|+++|++||+|.+-
T Consensus 28 ~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI 60 (119)
T 3p1f_A 28 PESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTI 60 (119)
T ss_dssp TTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHH
T ss_pred CCCchhcCCCCchhccCCCHHHHhcCCCCHHHH
Confidence 455689999874111257899999999999874
No 134
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.04 E-value=5.2 Score=30.26 Aligned_cols=41 Identities=10% Similarity=-0.032 Sum_probs=27.8
Q ss_pred ccccccCCcccCCccCCCCccccccCCcccccccchhhhhhccCccc
Q 011239 161 LSASKKTEVDETGECSSSSAVMLETTGKDLSAKDLCISILRNEGMLE 207 (490)
Q Consensus 161 ~s~s~~~~~~d~~eCsss~ic~~e~~ged~s~~D~C~hil~~~gll~ 207 (490)
.++....+.++..+| .||+..+..-.+. .|.|+||..|+..
T Consensus 9 ~~~~~~~~~~~~~~C---~IC~~~~~~~~~~---~CgH~fC~~Ci~~ 49 (73)
T 2ysl_A 9 ASGQFVNKLQEEVIC---PICLDILQKPVTI---DCGHNFCLKCITQ 49 (73)
T ss_dssp CCCCCCCCCCCCCBC---TTTCSBCSSEEEC---TTCCEEEHHHHHH
T ss_pred ccHHHHHhCccCCEe---ccCCcccCCeEEc---CCCChhhHHHHHH
Confidence 334444555666778 8998876642222 7999999999877
No 135
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=48.10 E-value=0.94 Score=38.72 Aligned_cols=31 Identities=10% Similarity=0.022 Sum_probs=23.0
Q ss_pred ecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 331 RVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 331 r~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
..+..|..+|.. ...++|+++|++||+|.+-
T Consensus 27 ~~s~~F~~p~~~--~~~pdY~~iI~~PmdL~tI 57 (116)
T 3iu5_A 27 LLCELFIRAPKR--RNQPDYYEVVSQPIDLMKI 57 (116)
T ss_dssp BGGGGGSSCCCG--GGCHHHHHHCSSCCCHHHH
T ss_pred eeeHHhcCCCCc--ccCCCHHHHhCCCCCHHHH
Confidence 455678877653 2456899999999999874
No 136
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.24 E-value=3.6 Score=31.41 Aligned_cols=37 Identities=11% Similarity=0.230 Sum_probs=26.7
Q ss_pred CcccCCccCCCCccccccCCcccccccchhhhhhccCccc
Q 011239 168 EVDETGECSSSSAVMLETTGKDLSAKDLCISILRNEGMLE 207 (490)
Q Consensus 168 ~~~d~~eCsss~ic~~e~~ged~s~~D~C~hil~~~gll~ 207 (490)
+.++..+| .||+.++...+....-.|.|+||..||..
T Consensus 11 ~~~~~~~C---~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~ 47 (74)
T 2ep4_A 11 ELNLHELC---AVCLEDFKPRDELGICPCKHAFHRKCLIK 47 (74)
T ss_dssp CCCCSCBC---SSSCCBCCSSSCEEEETTTEEEEHHHHHH
T ss_pred cCCCCCCC---cCCCcccCCCCcEEEcCCCCEecHHHHHH
Confidence 34445677 99999877654443335999999999877
No 137
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=44.35 E-value=6.8 Score=40.54 Aligned_cols=50 Identities=26% Similarity=0.471 Sum_probs=32.6
Q ss_pred ccccccccccCC-C--CeEEec--CCCCcccccccCCCcCCCCCC-------Cccccccccc
Q 011239 233 RSCKICGRSETA-L--KLLLCD--DCEEAFHVTCYTPRIKIVPSD-------EWFCHLCLKK 282 (490)
Q Consensus 233 ~~C~VC~~~g~~-~--~LL~CD--~Cdr~yH~~Cl~PpL~~iP~g-------~W~C~~C~~~ 282 (490)
..|.+|-..-.+ . ....|+ .|...||..|+...+.+.+.+ .=-||.|+..
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCc
Confidence 468888864433 2 335698 899999999997644333221 1239999874
No 138
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=43.20 E-value=1.8 Score=38.55 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=24.4
Q ss_pred eeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 329 SVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 329 ~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
+...+..|..+|.. ...++|+++|++||+|.+-
T Consensus 45 ~~~~~~~F~~~~~~--~~~pdY~~iIk~PmdL~tI 77 (150)
T 3tlp_A 45 GRRLCDLFMVKPSK--KDYPDYYKIILEPMDLKII 77 (150)
T ss_dssp CCBGGGGGSSCCCT--TTCHHHHHHCSSCCCHHHH
T ss_pred CCcccHHhcCCCch--hhCcCHHHHhCCCCCHHHH
Confidence 44556678777654 2457899999999999874
No 139
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=40.59 E-value=4.4 Score=32.67 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=25.7
Q ss_pred ccCCccCCCCccccccCCcccccccchhhhhhccCccc
Q 011239 170 DETGECSSSSAVMLETTGKDLSAKDLCISILRNEGMLE 207 (490)
Q Consensus 170 ~d~~eCsss~ic~~e~~ged~s~~D~C~hil~~~gll~ 207 (490)
++..+| .||+.++...+....-.|.|+||..||..
T Consensus 38 ~~~~~C---~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~ 72 (91)
T 2l0b_A 38 GQEMCC---PICCSEYVKGDVATELPCHHYFHKPCVSI 72 (91)
T ss_dssp SSCSEE---TTTTEECCTTCEEEEETTTEEEEHHHHHH
T ss_pred CCCCCC---cccChhhcCCCcEEecCCCChHHHHHHHH
Confidence 345578 99998877655443345999999999877
No 140
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=37.59 E-value=7.1 Score=33.85 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=0.0
Q ss_pred cCCCCcccccccCCCcCCCCCCCccccccccc
Q 011239 251 DDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 251 D~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
-.|...||..|+.+-|..- -.||.|+..
T Consensus 82 ~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~ 109 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKTR----QVCPLDNRE 109 (117)
T ss_dssp --------------------------------
T ss_pred CCcCceEcHHHHHHHHHcC----CcCCCCCCe
Confidence 3689999999998876652 369999864
No 141
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=36.85 E-value=7.5 Score=32.89 Aligned_cols=31 Identities=26% Similarity=0.537 Sum_probs=23.6
Q ss_pred EEecCCCCcccccccCCCcCCCCCCCccccccccc
Q 011239 248 LLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 248 L~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
+.--.|...||..|+.+-|.. .-.||.|+..
T Consensus 68 ~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 98 (106)
T 3dpl_R 68 VAWGVCNHAFHFHCISRWLKT----RQVCPLDNRE 98 (106)
T ss_dssp EEEETTSCEEEHHHHHHHHTT----CSBCSSSCSB
T ss_pred EeecccCcEECHHHHHHHHHc----CCcCcCCCCc
Confidence 334479999999999876654 2479999875
No 142
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=36.78 E-value=3.9 Score=41.73 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=26.6
Q ss_pred eeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 329 SVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 329 ~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
++..+..|..+|.. ...++|+++|++||||.+-
T Consensus 227 ~~~~s~~F~~pvd~--~~~PdY~~iIk~PmDL~tI 259 (361)
T 2r10_A 227 KVKLSEPFMELVDK--DELPEYYEIVHSPMALSIV 259 (361)
T ss_dssp SSCTTGGGSSCCCT--TTCTHHHHHCSSCCCHHHH
T ss_pred CCcchhcccCCCCh--hhcccHHHHhcCcccHHHH
Confidence 45677789999964 2468999999999999874
No 143
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=36.75 E-value=4.2 Score=39.49 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=29.1
Q ss_pred CCCceeeeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 323 TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 323 ~~~y~~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
++..+..+..+..|..+|.. ...++|+++|++||||.+-
T Consensus 22 il~~l~~~~~~~~F~~pv~~--~~~pdY~~iI~~PmdL~tI 60 (265)
T 3uv5_A 22 IINDMRDLPNTYPFHTPVNA--KVVKDYYKIITRPMDLQTL 60 (265)
T ss_dssp HHHHHHTSTTCGGGTSCCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred HHHHHHcCCCchhhhCCCCh--hhcCCHHHHhCCCCcHHHH
Confidence 34444445667789999975 2467999999999999874
No 144
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=35.58 E-value=5 Score=38.95 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=25.1
Q ss_pred eecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 330 VRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 330 Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
...+.+|..+|.. ...++|+++|++||+|.+-
T Consensus 152 ~~~~~~F~~pv~~--~~~pdY~~iIk~Pmdl~tI 183 (265)
T 3uv5_A 152 VPDSWPFHHPVNK--KFVPDYYKVIVNPMDLETI 183 (265)
T ss_dssp STTCGGGTSCCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred hhhhHHHhCCCCh--hHhCcHHHHhCCcccHHHH
Confidence 3446689999964 2467999999999999874
No 145
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=35.55 E-value=6.2 Score=28.11 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=24.5
Q ss_pred cCCccCCCCccccccCC-cccccccchhhhhhccCccc
Q 011239 171 ETGECSSSSAVMLETTG-KDLSAKDLCISILRNEGMLE 207 (490)
Q Consensus 171 d~~eCsss~ic~~e~~g-ed~s~~D~C~hil~~~gll~ 207 (490)
+..+| .||+..+.. ++....-.|.|+|+..++..
T Consensus 4 ~~~~C---~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~ 38 (55)
T 2ecm_A 4 GSSGC---PICLEDIHTSRVVAHVLPCGHLLHRTCYEE 38 (55)
T ss_dssp CCCSC---TTTCCCCCTTTSCEEECTTSCEEETTHHHH
T ss_pred CCCcC---cccChhhcCCCcCeEecCCCCcccHHHHHH
Confidence 45567 899887743 33444556999999999876
No 146
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=34.50 E-value=3.5 Score=41.32 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=26.5
Q ss_pred eeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 329 SVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 329 ~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
+++.+..|..+|.. ...++|+++|++||+|.+-
T Consensus 177 ~~~~s~~F~~pvd~--~~~PdY~~iIk~PMDL~tI 209 (311)
T 2r0y_A 177 KVKLSEPFMELVDK--DELPEYYEIVHSPMALSIV 209 (311)
T ss_dssp SSCTTGGGSSCCCT--TTCHHHHHHCSSCCCHHHH
T ss_pred CCccHHHHhCCCCh--hhcccHHHHhCCccCHHHH
Confidence 45667789999964 2467899999999999874
No 147
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=33.73 E-value=5.3 Score=39.47 Aligned_cols=36 Identities=11% Similarity=0.117 Sum_probs=27.6
Q ss_pred ceeeeecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 326 YTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 326 y~~~Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
.+..+..+..|..+|.. ...++|+++|++||||++-
T Consensus 58 ~l~~~~~a~~F~~pV~~--~~~pdY~~iIk~PmDL~tI 93 (292)
T 3aad_A 58 DMRDLPNTYPFHTPVNA--KVVKDYYKIITRPMDLQTL 93 (292)
T ss_dssp HHSSSTTCGGGSSSCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred HHHhCCcchhhcCCCCc--hhcccHHHHcCCcCCHHHH
Confidence 33345667789999864 2468999999999999874
No 148
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.35 E-value=8.8 Score=30.29 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=14.2
Q ss_pred cccccchhhhhhccCccc
Q 011239 190 LSAKDLCISILRNEGMLE 207 (490)
Q Consensus 190 ~s~~D~C~hil~~~gll~ 207 (490)
+.....|.|+|+..||..
T Consensus 42 ~~~~~~C~H~FH~~Ci~~ 59 (81)
T 2ecl_A 42 VVVWGECNHSFHNCCMSL 59 (81)
T ss_dssp CEEEETTSCEEEHHHHHH
T ss_pred EEEeCCCCCccChHHHHH
Confidence 334446999999999887
No 149
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.33 E-value=15 Score=27.80 Aligned_cols=44 Identities=23% Similarity=0.474 Sum_probs=29.8
Q ss_pred ccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 233 RSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 233 ~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
..|.+|...-.. .+++ .|...||..|+...+.. ...||.|+..-
T Consensus 16 ~~C~IC~~~~~~-~~~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 59 (71)
T 2d8t_A 16 PECAICLQTCVH-PVSL--PCKHVFCYLCVKGASWL----GKRCALCRQEI 59 (71)
T ss_dssp CBCSSSSSBCSS-EEEE--TTTEEEEHHHHHHCTTC----SSBCSSSCCBC
T ss_pred CCCccCCcccCC-CEEc--cCCCHHHHHHHHHHHHC----CCcCcCcCchh
Confidence 468899865422 2222 59999999999755443 25899998753
No 150
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=33.28 E-value=5.4 Score=39.44 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=25.3
Q ss_pred eecCCCccccCCCCCCCCCCCCCCcCCCccCCCC
Q 011239 330 VRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 363 (490)
Q Consensus 330 Vr~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~s 363 (490)
+..+..|..+|.. ...++|+++|++||||.+-
T Consensus 185 ~~~s~~F~~pvd~--~~~pdY~~iIk~PmdL~tI 216 (292)
T 3aad_A 185 VPDSWPFHHPVNK--KFVPDYYKVIVNPMDLETI 216 (292)
T ss_dssp STTCGGGTSCCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred CcchhHHHhcccc--cccccHHHHcCCcCCHHHH
Confidence 3456689999864 3568999999999998874
No 151
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.10 E-value=26 Score=29.04 Aligned_cols=35 Identities=31% Similarity=0.848 Sum_probs=25.9
Q ss_pred CCeEEecCCC-CcccccccCCCcCCCCCCCccccccccc
Q 011239 245 LKLLLCDDCE-EAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 245 ~~LL~CD~Cd-r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
-.||+|..|. .+-|..|.. |.. ....|.|..|...
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs~--l~~-~~~~weC~~C~~v 79 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCSS--LRP-NSKKWECNECLPA 79 (85)
T ss_dssp TBCEECSSSCCCEECSGGGT--CCT-TCSCCCCTTTSCC
T ss_pred EEEEeCcccCCchhHHHHhC--CcC-CCCCEECCcCccc
Confidence 3788888886 457999994 443 3358999999853
No 152
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=32.78 E-value=24 Score=26.76 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=32.0
Q ss_pred ccccccccccCCCCeEEecCCCCcccccccCCCcCCC---CCCCcccccccccc
Q 011239 233 RSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIV---PSDEWFCHLCLKKK 283 (490)
Q Consensus 233 ~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~i---P~g~W~C~~C~~~~ 283 (490)
..|.+|...-..-.++ .|...||..|+...+... ..+.-.||.|+...
T Consensus 13 ~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 13 VTCPICLELLTEPLSL---DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CEETTTTEECSSCCCC---SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred CCCcCCCcccCCeeEC---CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 4688888754322222 688899999998665542 12357899998754
No 153
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=32.63 E-value=37 Score=26.76 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=21.9
Q ss_pred cccccccc--hh-hhhhccCcccccCCccccCCCCCCCCCCCCcccc
Q 011239 188 KDLSAKDL--CI-SILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 231 (490)
Q Consensus 188 ed~s~~D~--C~-hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c 231 (490)
++....|. |. .-||..|+-. ..+|.+.|+||.|
T Consensus 27 g~MI~CD~~~C~~~wfH~~Cvgl-----------~~~p~g~w~Cp~C 62 (71)
T 1wen_A 27 GEMIGCDNPDCSIEWFHFACVGL-----------TTKPRGKWFCPRC 62 (71)
T ss_dssp SSEECCSCSSCSCCCEETTTTTC-----------SSCCSSCCCCTTT
T ss_pred CCEeEeeCCCCCCccEecccCCc-----------CcCCCCCEECCCC
Confidence 45777787 66 5666666543 3456789999855
No 154
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.28 E-value=8.7 Score=28.67 Aligned_cols=44 Identities=20% Similarity=0.456 Sum_probs=29.8
Q ss_pred ccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCccccccccc
Q 011239 233 RSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 233 ~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
..|.+|...-..-.+ -.|...||..|+...+. .+...||.|+..
T Consensus 16 ~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQ---TECGHRFCESCMAALLS---SSSPKCTACQES 59 (66)
T ss_dssp EECTTTCCEESSCCC---CSSSCCCCHHHHHHHHT---TSSCCCTTTCCC
T ss_pred CCCCCCChHhcCeeE---CCCCCHHHHHHHHHHHH---hCcCCCCCCCcC
Confidence 468888865432222 27888999999976554 234579999865
No 155
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=31.98 E-value=31 Score=25.32 Aligned_cols=18 Identities=28% Similarity=0.844 Sum_probs=13.2
Q ss_pred CcCCCCCCCcccccccccc
Q 011239 265 RIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 265 pL~~iP~g~W~C~~C~~~~ 283 (490)
+...+|+ +|.||.|...+
T Consensus 23 ~f~~lP~-dw~CP~Cg~~k 40 (46)
T 6rxn_A 23 PFDQLPD-DWCCPVCGVSK 40 (46)
T ss_dssp CGGGSCT-TCBCTTTCCBG
T ss_pred chhhCCC-CCcCcCCCCcH
Confidence 4456775 79999998754
No 156
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=31.14 E-value=17 Score=28.83 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=24.6
Q ss_pred cccCCccCCCCccccccCCccccccc-chhhhhhccCccc
Q 011239 169 VDETGECSSSSAVMLETTGKDLSAKD-LCISILRNEGMLE 207 (490)
Q Consensus 169 ~~d~~eCsss~ic~~e~~ged~s~~D-~C~hil~~~gll~ 207 (490)
.+|...| +||+-.++..+....- .|+|.||..|+..
T Consensus 8 ~~~~~~C---pICle~~~~~d~~~~p~~CGH~fC~~Cl~~ 44 (78)
T 1e4u_A 8 KEDPVEC---PLCMEPLEIDDINFFPCTCGYQICRFCWHR 44 (78)
T ss_dssp CCCCCBC---TTTCCBCCTTTTTCCSSTTSCCCCHHHHHH
T ss_pred cccCCcC---CccCccCccccccccccCCCCCcCHHHHHH
Confidence 3455678 9999877654443222 3999999998765
No 157
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=30.86 E-value=21 Score=29.51 Aligned_cols=46 Identities=17% Similarity=0.543 Sum_probs=32.2
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
+..|.+|...-.. ...+ .|...|+..|+...+.. +...||.|+..-
T Consensus 15 ~~~C~iC~~~~~~-p~~~--~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~ 60 (115)
T 3l11_A 15 ECQCGICMEILVE-PVTL--PCNHTLCKPCFQSTVEK---ASLCCPFCRRRV 60 (115)
T ss_dssp HHBCTTTCSBCSS-CEEC--TTSCEECHHHHCCCCCT---TTSBCTTTCCBC
T ss_pred CCCCccCCcccCc-eeEc--CCCCHHhHHHHHHHHhH---CcCCCCCCCccc
Confidence 3568899865432 2333 79999999999765542 457899998764
No 158
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.20 E-value=10 Score=30.45 Aligned_cols=33 Identities=9% Similarity=0.153 Sum_probs=22.7
Q ss_pred cCCccCCCCccccccCCcccccccchh-----hhhhccCccc
Q 011239 171 ETGECSSSSAVMLETTGKDLSAKDLCI-----SILRNEGMLE 207 (490)
Q Consensus 171 d~~eCsss~ic~~e~~ged~s~~D~C~-----hil~~~gll~ 207 (490)
+...| .||+.++..++.- .--|. |.||..||..
T Consensus 14 ~~~~C---~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~ 51 (80)
T 2d8s_A 14 SQDIC---RICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQ 51 (80)
T ss_dssp TSCCC---SSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHH
T ss_pred CCCCC---eEcCccccCCCee-EeccccCCcCCeeCHHHHHH
Confidence 34567 9999887643322 23464 9999999887
No 159
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.35 E-value=17 Score=28.99 Aligned_cols=36 Identities=14% Similarity=0.042 Sum_probs=25.3
Q ss_pred CCcccCCccCCCCccccccCCcccccccchhhhhhccCccc
Q 011239 167 TEVDETGECSSSSAVMLETTGKDLSAKDLCISILRNEGMLE 207 (490)
Q Consensus 167 ~~~~d~~eCsss~ic~~e~~ged~s~~D~C~hil~~~gll~ 207 (490)
+=.++..+| .||...+...+ . ...|.|.|+.+||..
T Consensus 10 ~y~~~i~~C---~IC~~~i~~g~-~-C~~C~h~fH~~Ci~k 45 (74)
T 2ct0_A 10 TYPDAVKIC---NICHSLLIQGQ-S-CETCGIRMHLPCVAK 45 (74)
T ss_dssp CCSSSSCBC---SSSCCBCSSSE-E-CSSSCCEECHHHHHH
T ss_pred hccCCCCcC---cchhhHcccCC-c-cCCCCchhhHHHHHH
Confidence 445566788 78777766332 2 228999999999887
No 160
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.18 E-value=9.6 Score=30.67 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=25.6
Q ss_pred cCCccCCCCccccccCCcccccccchhhhhhccCccc
Q 011239 171 ETGECSSSSAVMLETTGKDLSAKDLCISILRNEGMLE 207 (490)
Q Consensus 171 d~~eCsss~ic~~e~~ged~s~~D~C~hil~~~gll~ 207 (490)
+.-+| .||+.++...++.....|.|.||..|+..
T Consensus 4 ~~~~C---~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~ 37 (94)
T 1wim_A 4 GSSGC---KLCLGEYPVEQMTTIAQCQCIFCTLCLKQ 37 (94)
T ss_dssp SBCCC---SSSCCCCBGGGEEEETTTTEEEEHHHHHH
T ss_pred CCcCC---cccCcccccccceEcCCCCCcccHHHHHH
Confidence 34457 99998887766655557999999998665
No 161
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=27.90 E-value=8.5 Score=39.19 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=24.6
Q ss_pred cCCCccccCCCCCCCCCCCCCCcCCCccCCCCCC
Q 011239 332 VGKGFQADIPDWLAPTNNDGYALGEPLELDTSEC 365 (490)
Q Consensus 332 ~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~se~ 365 (490)
....|..+|.. ...++|+++|++||||.+-+.
T Consensus 97 ~~~~F~~p~~~--~~~PdY~~iIk~Pmdl~tI~~ 128 (361)
T 2r10_A 97 IFKDFIKLPSR--KFHPQYYYKIQQPMSINEIKS 128 (361)
T ss_dssp HHGGGSSCCCT--TTCTTHHHHCSSCCCHHHHHT
T ss_pred ccHHhcCCCCc--ccCCChHhhcCCCcCHHHHHH
Confidence 34578888764 345799999999999988533
No 162
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.14 E-value=17 Score=27.44 Aligned_cols=33 Identities=9% Similarity=0.031 Sum_probs=22.8
Q ss_pred cccCCccCCCCccccccCCcccccccchhhhhhccCccc
Q 011239 169 VDETGECSSSSAVMLETTGKDLSAKDLCISILRNEGMLE 207 (490)
Q Consensus 169 ~~d~~eCsss~ic~~e~~ged~s~~D~C~hil~~~gll~ 207 (490)
..+..+| .||+..+.... .-.|.|+||..|+..
T Consensus 12 ~~~~~~C---~IC~~~~~~~~---~~~CgH~fC~~Ci~~ 44 (71)
T 2d8t_A 12 SLTVPEC---AICLQTCVHPV---SLPCKHVFCYLCVKG 44 (71)
T ss_dssp SSSCCBC---SSSSSBCSSEE---EETTTEEEEHHHHHH
T ss_pred CCCCCCC---ccCCcccCCCE---EccCCCHHHHHHHHH
Confidence 3455567 89987764322 225999999999876
No 163
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=26.80 E-value=36 Score=23.99 Aligned_cols=26 Identities=27% Similarity=0.593 Sum_probs=16.3
Q ss_pred ccccccCCCcC-CCCCCCccccccccc
Q 011239 257 FHVTCYTPRIK-IVPSDEWFCHLCLKK 282 (490)
Q Consensus 257 yH~~Cl~PpL~-~iP~g~W~C~~C~~~ 282 (490)
|...|..|--+ .--+|.|||..|-+-
T Consensus 4 yD~~C~KPC~T~DDCS~gw~CqaC~nf 30 (38)
T 4cpa_I 4 ADPICNKPCKTHDDCSGAWFCQACWNS 30 (38)
T ss_dssp SCTTTTCBCSSSSSSCCCSSCCEEETT
T ss_pred cccccCCCccCccccccchHHHHHHhh
Confidence 44556655322 234578999999763
No 164
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.65 E-value=5.9 Score=29.36 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=26.0
Q ss_pred CCcccCCccCCCCccccccCCc----ccccccchhhhhhccCccc
Q 011239 167 TEVDETGECSSSSAVMLETTGK----DLSAKDLCISILRNEGMLE 207 (490)
Q Consensus 167 ~~~~d~~eCsss~ic~~e~~ge----d~s~~D~C~hil~~~gll~ 207 (490)
...++..+| .||+..+... .....-.|.|+|+..|+..
T Consensus 10 ~~~~~~~~C---~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~ 51 (69)
T 2ea6_A 10 LRPSGTVSC---PICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD 51 (69)
T ss_dssp CCTTCCCCC---TTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHH
T ss_pred cCCCCCCCC---cccCccccccccccCCeEeCCCCChhcHHHHHH
Confidence 344556678 8998876532 2224557999999999876
No 165
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=25.42 E-value=23 Score=31.76 Aligned_cols=62 Identities=15% Similarity=0.319 Sum_probs=36.0
Q ss_pred CCCceEecccccCCCCCCCCcccCCCcccc---Ccc---cccCCCCceecccccCCCCCCCCCCCCCCcHHHHHHHHHHH
Q 011239 381 SIGNWLQCKQVLEGTGDGVDGTSCGKWRRA---PLF---EVQTDDWECFCAVQWDPTHADCAVPQELETDEVSKQLKYLE 454 (490)
Q Consensus 381 s~gnw~qC~~c~~~~~~~~~~i~C~kwrr~---p~~---~~~~~~w~c~c~~~wdp~h~dC~~P~el~~~~~~~~l~~~~ 454 (490)
..|.||||. .|..|--. .+. ...++.|.|.-+....... .....|..++...+.+.++
T Consensus 19 ~~~~mi~Cd-------------~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~---~~~~~l~~~~~~~l~~il~ 82 (174)
T 2ri7_A 19 ESKFYIGCD-------------RCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAM---TVLTPLTEKDYEGLKRVLR 82 (174)
T ss_dssp TTSCEEECT-------------TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHHHH---TTTSBCCHHHHHHHHHHHH
T ss_pred CCCCEeECC-------------CCCchhChhhcCCchhhccCccCeecCCCcchhccc---cccccCCHHHHHHHHHHHH
Confidence 467899999 78888322 222 1247899997766442111 1223466666666656555
Q ss_pred HHHh
Q 011239 455 MLRL 458 (490)
Q Consensus 455 ~~~~ 458 (490)
.|..
T Consensus 83 ~l~~ 86 (174)
T 2ri7_A 83 SLQA 86 (174)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5543
No 166
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=25.35 E-value=21 Score=34.27 Aligned_cols=47 Identities=21% Similarity=0.446 Sum_probs=34.2
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
...|.+|..--- .-..|..|...||..|+.-.+... +.--||.|...
T Consensus 180 i~~C~iC~~iv~--~g~~C~~C~~~~H~~C~~~~~~~~--~~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCS--SCEECSSSCCEECHHHHHHHTTTC--SSCBCTTTCCB
T ss_pred CCcCcchhhHHh--CCcccCccChHHHHHHHHHHHHhC--CCCCCCCCCCC
Confidence 357999997654 347799999999999996544432 34579999764
No 167
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=25.21 E-value=12 Score=30.60 Aligned_cols=46 Identities=20% Similarity=0.379 Sum_probs=33.6
Q ss_pred ccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 233 RSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 233 ~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
..|.+|...-. .-+.|-.|...||..|+...+.... ..||.|+..-
T Consensus 23 ~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~~~~---~~CP~Cr~~~ 68 (100)
T 3lrq_A 23 FRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQR---AQCPHCRAPL 68 (100)
T ss_dssp TBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHHHTC---SBCTTTCCBC
T ss_pred CCCccCCcccc--CccccCCCCChhhHHHHHHHHHHCc---CCCCCCCCcC
Confidence 46899987553 4566689999999999976544321 5899998754
No 168
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.81 E-value=25 Score=24.96 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=24.8
Q ss_pred CCcccCCccCCCCccccccCCcccccccchhhhhhccCccc
Q 011239 167 TEVDETGECSSSSAVMLETTGKDLSAKDLCISILRNEGMLE 207 (490)
Q Consensus 167 ~~~~d~~eCsss~ic~~e~~ged~s~~D~C~hil~~~gll~ 207 (490)
.+.++...| .||...+..-.+ -.|.|+|+..++..
T Consensus 10 ~~~~~~~~C---~IC~~~~~~p~~---~~CgH~fC~~Ci~~ 44 (58)
T 2ecj_A 10 ENLQVEASC---SVCLEYLKEPVI---IECGHNFCKACITR 44 (58)
T ss_dssp SCSCCCCBC---SSSCCBCSSCCC---CSSCCCCCHHHHHH
T ss_pred hccccCCCC---ccCCcccCccEe---CCCCCccCHHHHHH
Confidence 344556678 888877664322 35999999999877
No 169
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.60 E-value=72 Score=26.47 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=21.0
Q ss_pred cccccccc--hh-hhhhccCcccccCCccccCCCCCCCCCCCCcccc
Q 011239 188 KDLSAKDL--CI-SILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 231 (490)
Q Consensus 188 ed~s~~D~--C~-hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~c 231 (490)
++...+|. |. .-||..|+-. ..+|.+.|+|+.|
T Consensus 47 g~MI~CD~~dC~~~WfH~~CVgl-----------~~~p~g~W~Cp~C 82 (91)
T 1weu_A 47 GEMIGCDNPDCSIEWFHFACVGL-----------TTKPRGKWFCPRC 82 (91)
T ss_dssp SCCCCCSCSSCSCCCCCSTTTTC-----------SSCCCSSCCCTTT
T ss_pred CCEeEecCCCCCCCCEecccCCc-----------CcCCCCCEECcCc
Confidence 45677777 55 4566555443 3456789999855
No 170
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=24.49 E-value=16 Score=32.34 Aligned_cols=47 Identities=21% Similarity=0.440 Sum_probs=33.2
Q ss_pred cccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 232 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 232 ~~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
...|.+|...-. .-+..-.|...||..|+...+.. +...||.|+..-
T Consensus 54 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 54 ELMCPICLDMLK--NTMTTKECLHRFCADCIITALRS---GNKECPTCRKKL 100 (165)
T ss_dssp HHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHT---TCCBCTTTCCBC
T ss_pred CCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHh---CcCCCCCCCCcC
Confidence 357999987543 34445689999999999765442 356799998753
No 171
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.49 E-value=21 Score=26.66 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=24.1
Q ss_pred cccCCccCCCCccccccCCcccccccchhhhhhccCccc
Q 011239 169 VDETGECSSSSAVMLETTGKDLSAKDLCISILRNEGMLE 207 (490)
Q Consensus 169 ~~d~~eCsss~ic~~e~~ged~s~~D~C~hil~~~gll~ 207 (490)
.++..+| .||+..+.. ..-.|.|+||..|+..
T Consensus 12 ~~~~~~C---~IC~~~~~~----~~~~CgH~fc~~Ci~~ 43 (70)
T 2ecn_A 12 LTDEEEC---CICMDGRAD----LILPCAHSFCQKCIDK 43 (70)
T ss_dssp CCCCCCC---SSSCCSCCS----EEETTTEEECHHHHHH
T ss_pred CCCCCCC---eeCCcCccC----cccCCCCcccHHHHHH
Confidence 3455677 899887665 3446999999999877
No 172
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=23.34 E-value=28 Score=23.62 Aligned_cols=14 Identities=21% Similarity=0.907 Sum_probs=11.0
Q ss_pred CCCCcccccccccc
Q 011239 270 PSDEWFCHLCLKKK 283 (490)
Q Consensus 270 P~g~W~C~~C~~~~ 283 (490)
..|+|.|+.|....
T Consensus 3 ~~gDW~C~~C~~~N 16 (33)
T 2k1p_A 3 SANDWQCKTCSNVN 16 (33)
T ss_dssp SSSSCBCSSSCCBC
T ss_pred CCCCcccCCCCCcc
Confidence 35899999997654
No 173
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=23.26 E-value=70 Score=22.95 Aligned_cols=25 Identities=16% Similarity=0.577 Sum_probs=14.9
Q ss_pred cccccccc----cCCCCeEEecCCCCccc
Q 011239 234 SCKICGRS----ETALKLLLCDDCEEAFH 258 (490)
Q Consensus 234 ~C~VC~~~----g~~~~LL~CD~Cdr~yH 258 (490)
.|..|+.. +.....|.|..|..+|-
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSSCCBCC
T ss_pred eCcCCCCcceEEcCCCCeEECcccCCccc
Confidence 46667651 12235577888877773
No 174
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=22.97 E-value=41 Score=27.94 Aligned_cols=39 Identities=10% Similarity=-0.093 Sum_probs=23.2
Q ss_pred ccccccCCcccccccchh---hhhhccCcccccCCccccCCCCCCCCCCCCccc
Q 011239 180 AVMLETTGKDLSAKDLCI---SILRNEGMLERFWPTQIRSSANDVDSGTGCSGI 230 (490)
Q Consensus 180 ic~~e~~ged~s~~D~C~---hil~~~gll~~~~p~~~~~~~e~vp~g~w~cp~ 230 (490)
||-....+ +....|.|. .-||..|+-. ..+|.+.|+||.
T Consensus 30 iC~~~~~g-~MI~CD~c~C~~eWfH~~CVgl-----------~~~p~~~W~Cp~ 71 (90)
T 2jmi_A 30 FCRNVSYG-PMVACDNPACPFEWFHYGCVGL-----------KQAPKGKWYCSK 71 (90)
T ss_dssp TTTCCCSS-SEECCCSSSCSCSCEETTTSSC-----------SSCTTSCCCSSH
T ss_pred EeCCCCCC-CEEEecCCCCccccCcCccCCC-----------CcCCCCCccCCh
Confidence 44432233 577788754 5566555433 345668999987
No 175
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=21.69 E-value=82 Score=25.80 Aligned_cols=17 Identities=29% Similarity=0.708 Sum_probs=12.7
Q ss_pred cCCCCCCCcccccccccc
Q 011239 266 IKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 266 L~~iP~g~W~C~~C~~~~ 283 (490)
...+|+ +|.||.|...+
T Consensus 54 fedlPd-dW~CPvCga~K 70 (81)
T 2kn9_A 54 WDDIPD-DWSCPDCGAAK 70 (81)
T ss_dssp TTTSCT-TCCCTTTCCCG
T ss_pred hhHCCC-CCcCCCCCCCH
Confidence 345664 89999998754
No 176
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=21.50 E-value=8.5 Score=38.51 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=24.6
Q ss_pred ecCCCccccCCCCCCCCCCCCCCcCCCccCCCCC
Q 011239 331 RVGKGFQADIPDWLAPTNNDGYALGEPLELDTSE 364 (490)
Q Consensus 331 r~G~~Fqa~VP~ws~~~~~y~~~I~ePMdLd~se 364 (490)
.+...|..+|.. ...++|+++|++||+|.+-+
T Consensus 46 ~~~~~F~~p~~~--~~~PdY~~iIk~PmDL~tI~ 77 (311)
T 2r0y_A 46 DIFKDFIKLPSR--KFHPQYYYKIQQPMSINEIK 77 (311)
T ss_dssp HHHGGGSSCCCT--TTCHHHHHHCSSCCCHHHHH
T ss_pred chhHHhcCCCCc--ccCCChHHHcCCCCCHHHHH
Confidence 345678888764 34578999999999998853
No 177
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=21.47 E-value=15 Score=33.02 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=33.3
Q ss_pred ccccccCCcccccccchhhhhhccCcccccCCccccCCCCC--CCCCCCCcccc
Q 011239 180 AVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSAND--VDSGTGCSGIC 231 (490)
Q Consensus 180 ic~~e~~ged~s~~D~C~hil~~~gll~~~~p~~~~~~~e~--vp~g~w~cp~c 231 (490)
.|..-..|+++...|.|..+||..||..-+-+. .++. .+.++|.|+.|
T Consensus 65 ~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~----~l~~i~~p~~~W~C~~C 114 (142)
T 2lbm_A 65 QCRWCAEGGNLICCDFCHNAFCKKCILRNLGRK----ELSTIMDENNQWYCYIC 114 (142)
T ss_dssp SCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHH----HHHHHHTSTTCCCCTTT
T ss_pred eecccCCCCcEEeCCCCCCeeeHhhcCCCCChh----hhhhcccCCCCCEeecc
Confidence 455556788999999999999999977521111 1122 36899998855
No 178
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=21.18 E-value=78 Score=23.60 Aligned_cols=17 Identities=29% Similarity=0.884 Sum_probs=12.4
Q ss_pred cCCCCCCCcccccccccc
Q 011239 266 IKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 266 L~~iP~g~W~C~~C~~~~ 283 (490)
...+|+ +|.||.|...+
T Consensus 30 f~~lP~-dw~CP~Cg~~K 46 (52)
T 1e8j_A 30 FEDLPD-DWACPVCGASK 46 (52)
T ss_dssp TTSSCT-TCCCSSSCCCT
T ss_pred hHHCCC-CCcCCCCCCcH
Confidence 345664 89999998754
No 179
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=21.10 E-value=24 Score=23.79 Aligned_cols=13 Identities=23% Similarity=0.997 Sum_probs=10.4
Q ss_pred CCCcccccccccc
Q 011239 271 SDEWFCHLCLKKK 283 (490)
Q Consensus 271 ~g~W~C~~C~~~~ 283 (490)
.|+|.|+.|....
T Consensus 3 ~gDW~C~~C~~~N 15 (32)
T 2lk0_A 3 FEDWLCNKCCLNN 15 (32)
T ss_dssp CSEEECTTTCCEE
T ss_pred CCCCCcCcCcCCc
Confidence 3899999997654
No 180
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.05 E-value=20 Score=29.18 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=29.8
Q ss_pred ccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCccccccccc
Q 011239 233 RSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 282 (490)
Q Consensus 233 ~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 282 (490)
..|.+|...-..-..+ .|...||..|+...+..- .+...||.|+..
T Consensus 22 ~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~ 67 (112)
T 1jm7_A 22 LECPICLELIKEPVST---KCDHIFCKFCMLKLLNQK-KGPSQCPLCKND 67 (112)
T ss_dssp TSCSSSCCCCSSCCBC---TTSCCCCSHHHHHHHHSS-SSSCCCTTTSCC
T ss_pred CCCcccChhhcCeEEC---CCCCHHHHHHHHHHHHhC-CCCCCCcCCCCc
Confidence 3588888644222222 688899999986544432 245689999864
No 181
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=20.94 E-value=58 Score=24.66 Aligned_cols=17 Identities=41% Similarity=0.989 Sum_probs=12.5
Q ss_pred cCCCCCCCcccccccccc
Q 011239 266 IKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 266 L~~iP~g~W~C~~C~~~~ 283 (490)
...+|+ +|.||.|...+
T Consensus 30 fe~lP~-dw~CP~Cg~~K 46 (54)
T 4rxn_A 30 FKDIPD-DWVCPLCGVGK 46 (54)
T ss_dssp GGGSCT-TCBCTTTCCBG
T ss_pred hhHCCC-CCcCcCCCCcH
Confidence 345664 89999998754
No 182
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=20.65 E-value=13 Score=31.25 Aligned_cols=45 Identities=13% Similarity=0.344 Sum_probs=30.2
Q ss_pred ccccccccccCCCCeEEecCCCCcccccccCCCcCCCCCCCcccccccccc
Q 011239 233 RSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 283 (490)
Q Consensus 233 ~~C~VC~~~g~~~~LL~CD~Cdr~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 283 (490)
..|.+|...-.. .+.+ .|...||..|+...+. .+...||.|+..-
T Consensus 53 ~~C~IC~~~~~~-p~~~--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 53 FQCICCQELVFR-PITT--VCQHNVCKDCLDRSFR---AQVFSCPACRYDL 97 (124)
T ss_dssp TBCTTTSSBCSS-EEEC--TTSCEEEHHHHHHHHH---TTCCBCTTTCCBC
T ss_pred CCCCcCChHHcC-cEEe--eCCCcccHHHHHHHHh---HCcCCCCCCCccC
Confidence 468888865431 2222 7999999999976544 2345899998754
Done!