Query 011240
Match_columns 490
No_of_seqs 224 out of 1253
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 23:09:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 6E-102 1E-106 811.4 32.3 370 15-390 76-512 (524)
2 PLN02849 beta-glucosidase 100.0 6.1E-99 1E-103 807.6 33.9 364 18-389 67-485 (503)
3 TIGR01233 lacG 6-phospho-beta- 100.0 9.9E-99 2E-103 801.9 35.1 351 21-390 44-467 (467)
4 PLN02814 beta-glucosidase 100.0 8E-99 2E-103 806.9 34.0 366 17-391 64-487 (504)
5 PRK13511 6-phospho-beta-galact 100.0 1.6E-98 3E-103 801.6 34.7 350 21-389 45-468 (469)
6 PLN02998 beta-glucosidase 100.0 2.5E-98 5E-103 801.9 32.9 360 20-387 72-488 (497)
7 COG2723 BglB Beta-glucosidase/ 100.0 3.1E-98 7E-103 778.3 31.4 358 12-388 41-454 (460)
8 PRK09593 arb 6-phospho-beta-gl 100.0 5.8E-97 1E-101 789.8 34.9 351 21-390 64-476 (478)
9 PRK09589 celA 6-phospho-beta-g 100.0 9.1E-97 2E-101 787.9 35.2 350 21-389 58-474 (476)
10 PF00232 Glyco_hydro_1: Glycos 100.0 2.1E-97 4E-102 792.2 23.9 359 13-389 41-455 (455)
11 PRK15014 6-phospho-beta-glucos 100.0 6.3E-95 1.4E-99 773.4 36.5 350 21-389 60-475 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 3E-94 6.5E-99 767.1 35.4 351 21-390 62-472 (474)
13 TIGR03356 BGL beta-galactosida 100.0 5.1E-91 1.1E-95 736.4 31.8 346 15-380 39-427 (427)
14 smart00633 Glyco_10 Glycosyl h 99.7 1.5E-14 3.3E-19 143.6 21.9 248 51-379 1-253 (254)
15 PF00150 Cellulase: Cellulase 99.5 1.1E-12 2.4E-17 129.9 21.8 254 31-346 22-279 (281)
16 PRK10150 beta-D-glucuronidase; 99.2 1.5E-08 3.1E-13 112.7 27.5 251 31-386 314-594 (604)
17 PF07745 Glyco_hydro_53: Glyco 99.1 6.5E-08 1.4E-12 99.6 25.2 257 33-361 27-319 (332)
18 PF02449 Glyco_hydro_42: Beta- 99.0 9.5E-10 2.1E-14 115.2 7.9 108 30-146 10-141 (374)
19 PF00331 Glyco_hydro_10: Glyco 98.9 1.3E-08 2.8E-13 104.7 14.9 273 36-382 27-318 (320)
20 PF01229 Glyco_hydro_39: Glyco 98.9 7.3E-08 1.6E-12 104.5 21.3 287 32-384 41-360 (486)
21 COG3693 XynA Beta-1,4-xylanase 98.6 4E-06 8.7E-11 84.7 20.3 262 51-386 67-343 (345)
22 PF02836 Glyco_hydro_2_C: Glyc 98.4 1.4E-05 3E-10 81.1 16.4 92 29-143 35-132 (298)
23 COG3867 Arabinogalactan endo-1 98.1 0.003 6.6E-08 63.4 25.2 242 33-344 65-342 (403)
24 COG1874 LacA Beta-galactosidas 97.9 2.8E-05 6.2E-10 86.5 7.4 116 30-154 30-173 (673)
25 PRK10340 ebgA cryptic beta-D-g 97.6 0.0042 9.1E-08 73.4 20.2 89 29-143 354-450 (1021)
26 COG2730 BglC Endoglucanase [Ca 97.4 0.0009 1.9E-08 71.2 10.6 110 33-145 76-193 (407)
27 PF11790 Glyco_hydro_cc: Glyco 97.1 0.0033 7.2E-08 62.1 10.6 78 242-349 136-217 (239)
28 PF03198 Glyco_hydro_72: Gluca 97.1 0.038 8.2E-07 56.4 17.8 253 31-382 54-308 (314)
29 PF14587 Glyco_hydr_30_2: O-Gl 97.0 0.17 3.6E-06 53.3 22.4 105 40-145 57-185 (384)
30 PRK09525 lacZ beta-D-galactosi 97.0 0.03 6.5E-07 66.3 18.5 89 29-143 370-463 (1027)
31 PF01301 Glyco_hydro_35: Glyco 96.8 0.0021 4.6E-08 66.3 6.5 96 30-131 24-131 (319)
32 COG3934 Endo-beta-mannanase [C 96.5 0.02 4.3E-07 61.1 10.6 270 33-387 29-322 (587)
33 PLN00197 beta-amylase; Provisi 96.0 0.044 9.5E-07 59.5 10.6 105 31-145 128-272 (573)
34 PLN03059 beta-galactosidase; P 96.0 0.038 8.3E-07 63.2 10.7 95 30-130 59-165 (840)
35 PLN02161 beta-amylase 95.6 0.029 6.3E-07 60.4 6.9 111 25-145 112-262 (531)
36 PLN02803 beta-amylase 95.5 0.035 7.6E-07 60.1 7.2 104 32-145 109-252 (548)
37 PF01373 Glyco_hydro_14: Glyco 95.0 0.016 3.5E-07 61.1 2.7 106 29-145 15-152 (402)
38 PLN02905 beta-amylase 94.7 0.095 2.1E-06 57.7 7.9 112 25-145 281-432 (702)
39 PF13204 DUF4038: Protein of u 94.4 0.22 4.7E-06 50.7 9.3 107 33-143 33-156 (289)
40 PLN02801 beta-amylase 94.3 0.19 4.1E-06 54.3 8.8 106 31-145 38-183 (517)
41 COG3664 XynB Beta-xylosidase [ 93.7 1.5 3.2E-05 46.5 13.7 263 39-383 14-294 (428)
42 PLN02705 beta-amylase 93.3 0.27 5.8E-06 54.2 7.9 107 30-145 268-414 (681)
43 PF02055 Glyco_hydro_30: O-Gly 90.3 17 0.00037 39.9 17.8 113 241-385 300-421 (496)
44 PF14488 DUF4434: Domain of un 88.6 3.4 7.3E-05 38.7 9.4 106 31-144 21-131 (166)
45 PF00332 Glyco_hydro_17: Glyco 88.5 0.83 1.8E-05 47.0 5.8 83 282-365 212-302 (310)
46 KOG0626 Beta-glucosidase, lact 86.0 0.18 3.8E-06 54.9 -0.9 112 337-464 387-500 (524)
47 PF12876 Cellulase-like: Sugar 85.4 1.6 3.4E-05 36.2 4.8 18 127-144 2-22 (88)
48 COG3250 LacZ Beta-galactosidas 82.9 6.4 0.00014 45.7 9.8 87 29-144 320-408 (808)
49 KOG0496 Beta-galactosidase [Ca 79.2 4.4 9.5E-05 45.4 6.5 95 30-130 49-155 (649)
50 COG5309 Exo-beta-1,3-glucanase 76.7 13 0.00028 37.6 8.3 56 20-96 53-108 (305)
51 smart00642 Aamy Alpha-amylase 73.1 13 0.00029 34.5 7.2 66 26-96 15-91 (166)
52 cd06592 GH31_glucosidase_KIAA1 58.2 81 0.0018 32.2 10.2 104 33-144 33-167 (303)
53 cd07939 DRE_TIM_NifV Streptomy 52.8 50 0.0011 32.8 7.4 82 32-131 71-152 (259)
54 cd03174 DRE_TIM_metallolyase D 51.9 47 0.001 32.5 7.1 83 33-131 77-159 (265)
55 PF12891 Glyco_hydro_44: Glyco 50.7 1.2E+02 0.0026 30.2 9.5 73 75-147 24-139 (239)
56 PF07488 Glyco_hydro_67M: Glyc 50.6 88 0.0019 32.3 8.7 86 30-132 57-150 (328)
57 PLN02361 alpha-amylase 50.2 37 0.00081 36.3 6.4 69 27-95 26-96 (401)
58 PF02638 DUF187: Glycosyl hydr 50.1 82 0.0018 32.4 8.7 99 31-131 20-154 (311)
59 COG1501 Alpha-glucosidases, fa 48.4 90 0.0019 36.4 9.5 100 42-149 294-422 (772)
60 cd07948 DRE_TIM_HCS Saccharomy 47.3 34 0.00075 34.3 5.3 61 32-96 73-133 (262)
61 cd06601 GH31_lyase_GLase GLase 47.3 57 0.0012 33.9 7.1 106 35-149 29-140 (332)
62 cd07945 DRE_TIM_CMS Leptospira 47.1 58 0.0013 33.0 6.9 87 31-132 75-161 (280)
63 PLN00196 alpha-amylase; Provis 45.6 34 0.00073 37.0 5.2 72 27-98 41-117 (428)
64 TIGR02090 LEU1_arch isopropylm 41.1 88 0.0019 32.9 7.4 83 31-131 72-154 (363)
65 PF03659 Glyco_hydro_71: Glyco 40.2 1E+02 0.0022 32.8 7.8 72 30-123 17-88 (386)
66 TIGR02660 nifV_homocitr homoci 40.2 93 0.002 32.7 7.5 83 32-132 74-156 (365)
67 cd07944 DRE_TIM_HOA_like 4-hyd 39.8 1.2E+02 0.0025 30.5 7.8 67 33-131 85-151 (266)
68 PF14871 GHL6: Hypothetical gl 38.3 87 0.0019 28.1 5.9 54 33-95 3-64 (132)
69 PRK04161 tagatose 1,6-diphosph 38.3 1.5E+02 0.0033 30.8 8.4 61 34-102 111-171 (329)
70 PRK12581 oxaloacetate decarbox 38.2 74 0.0016 34.8 6.4 73 29-131 99-176 (468)
71 COG1523 PulA Type II secretory 38.1 66 0.0014 37.0 6.2 60 36-96 206-286 (697)
72 PRK14041 oxaloacetate decarbox 37.9 1.1E+02 0.0025 33.4 7.8 73 29-131 89-166 (467)
73 PRK12399 tagatose 1,6-diphosph 37.3 1.6E+02 0.0035 30.6 8.3 60 35-102 110-169 (324)
74 PRK14040 oxaloacetate decarbox 36.5 1.3E+02 0.0027 34.1 8.1 66 33-127 100-165 (593)
75 PRK12858 tagatose 1,6-diphosph 36.4 1.7E+02 0.0037 30.6 8.6 53 36-96 112-164 (340)
76 COG3589 Uncharacterized conser 36.3 1.2E+02 0.0026 31.8 7.2 86 35-143 21-106 (360)
77 cd06603 GH31_GANC_GANAB_alpha 36.2 1.1E+02 0.0024 31.7 7.1 70 78-147 67-167 (339)
78 cd06602 GH31_MGAM_SI_GAA This 35.7 1.4E+02 0.003 31.1 7.8 106 33-146 27-169 (339)
79 PRK05692 hydroxymethylglutaryl 35.1 1.2E+02 0.0026 30.8 7.1 89 31-132 80-169 (287)
80 PRK12313 glycogen branching en 34.5 3E+02 0.0065 31.2 10.8 94 32-138 172-307 (633)
81 PLN02746 hydroxymethylglutaryl 34.3 1.3E+02 0.0027 31.7 7.2 87 32-131 123-210 (347)
82 TIGR03581 EF_0839 conserved hy 34.3 1.3E+02 0.0029 29.5 6.8 73 30-118 135-229 (236)
83 PRK12331 oxaloacetate decarbox 34.3 1.6E+02 0.0036 31.9 8.3 70 32-131 98-167 (448)
84 COG3534 AbfA Alpha-L-arabinofu 33.8 6.7E+02 0.015 27.5 13.6 97 33-144 52-175 (501)
85 PF02065 Melibiase: Melibiase; 33.7 3.2E+02 0.0069 29.2 10.2 92 33-137 61-187 (394)
86 cd06525 GH25_Lyc-like Lyc mura 33.3 1.7E+02 0.0038 27.2 7.4 56 28-101 7-62 (184)
87 PRK05402 glycogen branching en 32.3 3.3E+02 0.007 31.5 10.8 92 34-138 269-402 (726)
88 TIGR03234 OH-pyruv-isom hydrox 32.0 1.4E+02 0.003 29.1 6.8 69 28-102 82-151 (254)
89 cd06543 GH18_PF-ChiA-like PF-C 31.5 2.1E+02 0.0046 29.2 8.2 85 37-132 19-105 (294)
90 PLN03153 hypothetical protein; 31.4 55 0.0012 36.2 4.0 70 83-160 326-402 (537)
91 cd06593 GH31_xylosidase_YicI Y 31.3 2.1E+02 0.0045 29.0 8.2 105 32-144 26-161 (308)
92 cd06600 GH31_MGAM-like This fa 31.1 2.4E+02 0.0052 28.9 8.6 106 33-146 27-164 (317)
93 PLN02784 alpha-amylase 30.6 1.2E+02 0.0025 35.9 6.6 69 27-95 518-588 (894)
94 cd07943 DRE_TIM_HOA 4-hydroxy- 30.4 1.4E+02 0.0029 29.7 6.5 67 33-131 88-154 (263)
95 PRK08195 4-hyroxy-2-oxovalerat 30.4 1.4E+02 0.0029 31.2 6.7 68 33-132 91-158 (337)
96 TIGR00433 bioB biotin syntheta 30.4 77 0.0017 31.7 4.8 54 33-94 123-177 (296)
97 PF04646 DUF604: Protein of un 29.5 26 0.00057 35.0 1.2 72 79-158 72-149 (255)
98 cd06542 GH18_EndoS-like Endo-b 29.2 1.8E+02 0.004 28.4 7.2 56 73-131 49-104 (255)
99 cd07941 DRE_TIM_LeuA3 Desulfob 28.8 2E+02 0.0043 28.9 7.4 82 33-128 81-162 (273)
100 PRK09441 cytoplasmic alpha-amy 28.6 1.2E+02 0.0027 32.9 6.3 72 27-98 19-106 (479)
101 TIGR01210 conserved hypothetic 28.5 2.6E+02 0.0057 28.7 8.4 110 33-158 117-229 (313)
102 PRK10933 trehalose-6-phosphate 28.0 1.2E+02 0.0027 33.7 6.3 67 27-96 30-102 (551)
103 TIGR03217 4OH_2_O_val_ald 4-hy 28.0 1.7E+02 0.0037 30.4 6.9 68 33-132 90-157 (333)
104 cd07938 DRE_TIM_HMGL 3-hydroxy 27.2 2.1E+02 0.0046 28.8 7.3 88 31-131 74-162 (274)
105 cd06598 GH31_transferase_CtsZ 26.7 1.8E+02 0.0039 29.9 6.8 112 33-147 27-169 (317)
106 TIGR01232 lacD tagatose 1,6-di 26.6 3E+02 0.0066 28.7 8.2 61 34-102 110-170 (325)
107 KOG1065 Maltase glucoamylase a 26.1 2.9E+02 0.0063 32.3 8.7 105 33-148 314-454 (805)
108 TIGR01108 oadA oxaloacetate de 26.0 2.7E+02 0.0058 31.4 8.4 69 33-131 94-162 (582)
109 PF13547 GTA_TIM: GTA TIM-barr 25.2 4E+02 0.0087 27.4 8.6 98 122-254 10-109 (299)
110 cd06589 GH31 The enzymes of gl 25.1 6.8E+02 0.015 24.7 11.5 90 33-146 27-120 (265)
111 PF11997 DUF3492: Domain of un 25.0 97 0.0021 31.2 4.3 24 281-309 185-208 (268)
112 PRK09505 malS alpha-amylase; R 24.9 1.8E+02 0.0039 33.5 6.9 65 32-96 232-313 (683)
113 cd06591 GH31_xylosidase_XylS X 24.6 3.4E+02 0.0075 27.8 8.4 109 33-147 27-164 (319)
114 TIGR02631 xylA_Arthro xylose i 24.6 7.1E+02 0.015 26.4 10.9 79 24-113 26-105 (382)
115 PLN02998 beta-glucosidase 24.3 34 0.00073 37.7 1.0 35 424-458 18-58 (497)
116 PRK03705 glycogen debranching 24.0 1.7E+02 0.0037 33.4 6.5 23 74-96 241-263 (658)
117 TIGR02403 trehalose_treC alpha 23.9 1.7E+02 0.0037 32.5 6.4 59 27-96 24-96 (543)
118 cd02874 GH18_CFLE_spore_hydrol 23.5 1.6E+02 0.0035 29.8 5.8 95 25-131 4-103 (313)
119 PRK11858 aksA trans-homoaconit 23.5 2.4E+02 0.0052 29.8 7.2 84 30-131 74-158 (378)
120 TIGR02402 trehalose_TreZ malto 23.5 2.1E+02 0.0045 31.9 6.9 54 32-96 113-181 (542)
121 PRK05799 coproporphyrinogen II 23.5 1.8E+02 0.0039 30.4 6.2 95 32-145 98-194 (374)
122 cd06599 GH31_glycosidase_Aec37 23.3 2.5E+02 0.0055 28.7 7.1 109 33-145 32-171 (317)
123 PF03511 Fanconi_A: Fanconi an 22.9 64 0.0014 25.3 1.9 39 54-99 19-57 (64)
124 TIGR00539 hemN_rel putative ox 22.2 2.2E+02 0.0047 29.7 6.5 62 32-102 99-163 (360)
125 PRK12677 xylose isomerase; Pro 22.1 8.2E+02 0.018 26.0 10.8 72 31-113 32-104 (384)
126 PLN02389 biotin synthase 22.0 1.9E+02 0.0042 30.7 6.0 57 31-95 176-233 (379)
127 cd07940 DRE_TIM_IPMS 2-isoprop 21.8 2.8E+02 0.0061 27.6 7.0 81 33-131 72-156 (268)
128 TIGR03471 HpnJ hopanoid biosyn 21.1 2.4E+02 0.0053 30.5 6.8 60 33-101 287-348 (472)
129 PLN02849 beta-glucosidase 20.9 47 0.001 36.7 1.2 27 431-457 24-56 (503)
130 cd07947 DRE_TIM_Re_CS Clostrid 20.7 3.5E+02 0.0075 27.4 7.4 60 32-95 76-135 (279)
131 PF10108 DNA_pol_B_exo2: Predi 20.7 1.7E+02 0.0036 28.6 4.8 86 283-384 38-126 (209)
132 cd07937 DRE_TIM_PC_TC_5S Pyruv 20.6 5.9E+02 0.013 25.5 9.0 70 32-131 93-162 (275)
133 PF01055 Glyco_hydro_31: Glyco 20.5 4.4E+02 0.0095 28.1 8.6 107 32-146 45-184 (441)
134 PRK10785 maltodextrin glucosid 20.3 2.6E+02 0.0056 31.5 7.0 53 33-96 182-247 (598)
135 PF00128 Alpha-amylase: Alpha 20.1 99 0.0021 30.2 3.3 61 33-96 7-73 (316)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-102 Score=811.38 Aligned_cols=370 Identities=32% Similarity=0.534 Sum_probs=319.1
Q ss_pred ccccCCCcccccccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEE
Q 011240 15 KMKKSITKEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLT 94 (490)
Q Consensus 15 ~~~~~~~~~~~~~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivT 94 (490)
++.++.+++.|||+||+|+|||+|||+||+++||||||||||+|.|+. .+.||++||+||++||++|+++||+|+||
T Consensus 76 ~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~---~~gVN~~Gi~fY~~LI~eL~~nGI~P~VT 152 (524)
T KOG0626|consen 76 KICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRL---TGGVNEAGIQFYNNLIDELLANGIEPFVT 152 (524)
T ss_pred ccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCc---CCCcCHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 667778899999999999999999999999999999999999998742 35799999999999999999999999999
Q ss_pred ccCCCCcccccc-cCCCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchhccccccCCCCCCCCCChhh--hhhcCC
Q 011240 95 LFHHSLPAWAGE-YGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLE--VATSAL 171 (490)
Q Consensus 95 L~H~dlP~~l~~-~GGw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~--~~~~~~ 171 (490)
|||||+||+|++ +|||+|+++|++|.+||++||++|||+||+|+|||||++++..||..|..|||+++..- ...+..
T Consensus 153 LfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s 232 (524)
T KOG0626|consen 153 LFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFGDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNS 232 (524)
T ss_pred EecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhcccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCC
Confidence 999999999987 89999999999999999999999999999999999999999999999999999875421 111223
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHh-hcCCCCCcEEEEeeccccCCCC--hhcHHHHHHHhhcc----------------
Q 011240 172 PTGVFNQAMHWMAIAHSKAYDYIHA-KSTSTKSKVGVAHHVSFMRPYG--LFDVTAVTLANTLT---------------- 232 (490)
Q Consensus 172 ~~~~~~~a~h~ll~AHa~A~~~ir~-~~~~~~~~VGi~~~~~~~~P~~--~~D~~aa~~~~~~~---------------- 232 (490)
..+.| .|.||||+|||+||++||+ ++..|+|+|||+++..|++|++ .+|..|+.++..+.
T Consensus 233 ~~epY-iv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~ 311 (524)
T KOG0626|consen 233 GTEPY-IVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDE 311 (524)
T ss_pred CCCcc-hHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHH
Confidence 44556 7899999999999999994 5667999999999999999987 47777776653221
Q ss_pred -------CCccc-----cccCCCcceEEeecCCCceeeCCCCccc----------------CC----CCcccC-CcccCc
Q 011240 233 -------TFPYV-----DSISDRLDFIGINYYGQEVVSGPGLKLV----------------ET----DEYSES-GRGVYP 279 (490)
Q Consensus 233 -------~~p~~-----~~i~~~~DFiGiNyYt~~~v~~~~~~~~----------------~~----~~~s~~-g~~i~P 279 (490)
++|.+ ..++|++||+|||||++.+++....... .. ...+.. ...++|
T Consensus 312 Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~P 391 (524)
T KOG0626|consen 312 MKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHLKPPPDPSQPGWSTDSGVDWTLEGNDLIGPKAGSDWLPVYP 391 (524)
T ss_pred HHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhccCCCCCCCCcccccccceeeeecccccccccccccceeecc
Confidence 13332 2469999999999999988875221100 00 001111 236899
Q ss_pred hHHHHHHHHHHHHhCCCCCCEEEeecCCCCC-----------CCcccHHHHHHHHHHHHHHHH-cCCCeeEEEEEecccc
Q 011240 280 DGLFRVLHQFHERYKHLNLPFIITENGVSDE-----------TDLIRRPYVIEHLLAVYAAMI-TGVPVIGYLFWTISDN 347 (490)
Q Consensus 280 ~gL~~~L~~i~~rY~~~~~PI~ITENG~~~~-----------~D~~Ri~yl~~hL~~v~~Ai~-dGv~V~GY~~WSllDn 347 (490)
+||+++|++++++|+ |+||||||||+.+. +|..|+.|++.||.+|++||. +||||+|||+||||||
T Consensus 392 ~Glr~~L~yiK~~Y~--np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDn 469 (524)
T KOG0626|consen 392 WGLRKLLNYIKDKYG--NPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDN 469 (524)
T ss_pred HHHHHHHHHHHhhcC--CCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccc
Confidence 999999999999999 79999999999973 588999999999999999996 9999999999999999
Q ss_pred cCCcCCCCCccceEEEcCCCCccccccchHHHHHHHHHcCCCC
Q 011240 348 WEWADGYGPKFGLVAVDRANNLARIPRPSYHLFTKVVTTGKVT 390 (490)
Q Consensus 348 fEW~~Gy~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~~~~~~ 390 (490)
|||.+||+.||||++|||++.++|+||.|+.||+++++.+..+
T Consensus 470 fEw~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl~~~~~~ 512 (524)
T KOG0626|consen 470 FEWLDGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFLKGKVKP 512 (524)
T ss_pred hhhhcCcccccccEEEeCCCCCcCCchhHHHHHHHHHcCCCCC
Confidence 9999999999999999999889999999999999999987653
No 2
>PLN02849 beta-glucosidase
Probab=100.00 E-value=6.1e-99 Score=807.59 Aligned_cols=364 Identities=25% Similarity=0.391 Sum_probs=310.1
Q ss_pred cCCCcccccccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccC
Q 011240 18 KSITKEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFH 97 (490)
Q Consensus 18 ~~~~~~~~~~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H 97 (490)
++.+++.||||||+|+|||+|||+||+++|||||+||||+|++ .|.+|++||+||++||++|+++||+|||||+|
T Consensus 67 ~~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G-----~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H 141 (503)
T PLN02849 67 NMSNGDIACDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNG-----RGSVNPKGLQFYKNFIQELVKHGIEPHVTLFH 141 (503)
T ss_pred CCCCCCccccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCC-----CCCCCHHHHHHHHHHHHHHHHcCCeEEEeecC
Confidence 4457788999999999999999999999999999999999986 36899999999999999999999999999999
Q ss_pred CCCcccccc-cCCCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchhccccccCCCCCCCCCChh-hhhhcC-CCch
Q 011240 98 HSLPAWAGE-YGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDML-EVATSA-LPTG 174 (490)
Q Consensus 98 ~dlP~~l~~-~GGw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~-~~~~~~-~~~~ 174 (490)
||+|+||++ +|||+|++++++|++||++||++|||+||+|+|||||++++..||..|.+|||..... ...+.. ....
T Consensus 142 ~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~ 221 (503)
T PLN02849 142 YDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTE 221 (503)
T ss_pred CCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHH
Confidence 999999987 5999999999999999999999999999999999999999999999999999864310 000000 0112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh-cCCCCCcEEEEeeccccCCCC--hhcHHHHHHHhhcc-----------CCc-----
Q 011240 175 VFNQAMHWMAIAHSKAYDYIHAK-STSTKSKVGVAHHVSFMRPYG--LFDVTAVTLANTLT-----------TFP----- 235 (490)
Q Consensus 175 ~~~~a~h~ll~AHa~A~~~ir~~-~~~~~~~VGi~~~~~~~~P~~--~~D~~aa~~~~~~~-----------~~p----- 235 (490)
. .+|+||+++||++||+++|+. ++.++++||++++..+++|.+ +.|+.|+.+.+.+. .+|
T Consensus 222 ~-~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~ 300 (503)
T PLN02849 222 P-YIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKR 300 (503)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHH
Confidence 3 388999999999999999975 333578999999999999976 67888876543221 112
Q ss_pred -------cc-----cccCCCcceEEeecCCCceeeCC---C----Ccc---cCC---CCcccCCcccCchHHHHHHHHHH
Q 011240 236 -------YV-----DSISDRLDFIGINYYGQEVVSGP---G----LKL---VET---DEYSESGRGVYPDGLFRVLHQFH 290 (490)
Q Consensus 236 -------~~-----~~i~~~~DFiGiNyYt~~~v~~~---~----~~~---~~~---~~~s~~g~~i~P~gL~~~L~~i~ 290 (490)
.+ +.+++++||+|||||++.+|+.. + ... ... ...+++||+|+|+||+.+|++++
T Consensus 301 ~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~ 380 (503)
T PLN02849 301 TIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKFSAFEYAVAPWAMESVLEYIK 380 (503)
T ss_pred HHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccCCCCCCCCCCCccccccCCCCCccCCCCCeEChHHHHHHHHHHH
Confidence 11 23678999999999999988641 1 100 001 23457899999999999999999
Q ss_pred HHhCCCCCCEEEeecCCCC-------CCCcccHHHHHHHHHHHHHHHHcCCCeeEEEEEecccccCCcCCCCCccceEEE
Q 011240 291 ERYKHLNLPFIITENGVSD-------ETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAV 363 (490)
Q Consensus 291 ~rY~~~~~PI~ITENG~~~-------~~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~rFGL~~V 363 (490)
++|+ ++||+|||||++. .+|..|++||++||.+|++||++||||+|||+|||||||||.+||++|||||+|
T Consensus 381 ~rY~--~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLi~V 458 (503)
T PLN02849 381 QSYG--NPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLKGYEFSFGLYSV 458 (503)
T ss_pred HhcC--CCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEE
Confidence 9997 4589999999984 358899999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CccccccchHHHHHHHHHcCCC
Q 011240 364 DRAN-NLARIPRPSYHLFTKVVTTGKV 389 (490)
Q Consensus 364 D~~~-~~~R~pK~Sa~~y~~ii~~~~~ 389 (490)
|+++ +++|+||+|++||+++|++++.
T Consensus 459 D~~~~~~~R~pK~S~~wy~~ii~~~~~ 485 (503)
T PLN02849 459 NFSDPHRKRSPKLSAHWYSAFLKGNST 485 (503)
T ss_pred CCCCCCcceecccHHHHHHHHHHhCCC
Confidence 9986 4799999999999999999874
No 3
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=9.9e-99 Score=801.88 Aligned_cols=351 Identities=28% Similarity=0.490 Sum_probs=305.1
Q ss_pred CcccccccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCC
Q 011240 21 TKEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSL 100 (490)
Q Consensus 21 ~~~~~~~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dl 100 (490)
.++.||||||+|+|||+|||+||+++||||||||||+|++ .|.+|++||+||++||++|+++||+|||||+||||
T Consensus 44 ~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g-----~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dl 118 (467)
T TIGR01233 44 TAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTG-----YGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDT 118 (467)
T ss_pred CCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhccCCC-----CCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCC
Confidence 6788999999999999999999999999999999999986 36899999999999999999999999999999999
Q ss_pred cccccccCCCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchhccccccCCCCCCCCCChhhhhhcCCCchhHHHHH
Q 011240 101 PAWAGEYGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFNQAM 180 (490)
Q Consensus 101 P~~l~~~GGw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~~a~ 180 (490)
|+||+++|||+|++++++|++||++||++||| |++|+|||||++++..||+.|.+|||..... .. ..+++
T Consensus 119 P~~L~~~GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~--------~~-~~~a~ 188 (467)
T TIGR01233 119 PEALHSNGDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGPIGDGQYLVGKFPPGIKYDL--------AK-VFQSH 188 (467)
T ss_pred cHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEecchhhhhhccchhcccCCCccchh--------HH-HHHHH
Confidence 99999999999999999999999999999998 9999999999999999999999999853211 02 23899
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEEeeccccCCCC---hhcHHHHHHHhhc----c-------CCc-----------
Q 011240 181 HWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYG---LFDVTAVTLANTL----T-------TFP----------- 235 (490)
Q Consensus 181 h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~---~~D~~aa~~~~~~----~-------~~p----------- 235 (490)
||+++||++||+++|+.. ++++||++++..+++|.+ +.|+.|+.+.+.+ + .+|
T Consensus 189 hn~l~AHa~A~~~~~~~~--~~~~IGi~~~~~~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~ 266 (467)
T TIGR01233 189 HNMMVSHARAVKLYKDKG--YKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHIL 266 (467)
T ss_pred HHHHHHHHHHHHHHHHhC--CCCeEEEEecCceeEECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhh
Confidence 999999999999999875 478999999999999975 6788887544311 0 111
Q ss_pred -------cc-----ccc---CCCcceEEeecCCCceeeCC--C-------C----------cc-----cC-CCCcccCCc
Q 011240 236 -------YV-----DSI---SDRLDFIGINYYGQEVVSGP--G-------L----------KL-----VE-TDEYSESGR 275 (490)
Q Consensus 236 -------~~-----~~i---~~~~DFiGiNyYt~~~v~~~--~-------~----------~~-----~~-~~~~s~~g~ 275 (490)
.+ +.| ++++||+|||||++.+|+.. . . .. .+ ..+.+++||
T Consensus 267 ~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw 346 (467)
T TIGR01233 267 AENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYVPRTDWDW 346 (467)
T ss_pred hccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCccccccCCccccCcccccCCCcccccCCCCCCcCCCCC
Confidence 00 123 57899999999999988641 0 0 00 00 114477999
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCEEEeecCCCC--------CCCcccHHHHHHHHHHHHHHHHcCCCeeEEEEEecccc
Q 011240 276 GVYPDGLFRVLHQFHERYKHLNLPFIITENGVSD--------ETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDN 347 (490)
Q Consensus 276 ~i~P~gL~~~L~~i~~rY~~~~~PI~ITENG~~~--------~~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSllDn 347 (490)
+|+|+||+.+|++++++|+. .+||+|||||++. .+|+.|+.||++||.+|++||++||||+|||+|||+||
T Consensus 347 ~i~P~Gl~~~L~~~~~~Y~~-~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn 425 (467)
T TIGR01233 347 IIYPEGLYDQIMRVKNDYPN-YKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDV 425 (467)
T ss_pred eeChHHHHHHHHHHHHHcCC-CCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh
Confidence 99999999999999999972 1479999999984 24889999999999999999999999999999999999
Q ss_pred cCCcCCCCCccceEEEcCCCCccccccchHHHHHHHHHcCCCC
Q 011240 348 WEWADGYGPKFGLVAVDRANNLARIPRPSYHLFTKVVTTGKVT 390 (490)
Q Consensus 348 fEW~~Gy~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~~~~~~ 390 (490)
|||..||++||||++||++ +++|+||+|++||+++|++++++
T Consensus 426 ~Ew~~Gy~~RfGLv~VD~~-t~~R~~K~S~~wy~~ii~~~~~~ 467 (467)
T TIGR01233 426 FSWSNGYEKRYGLFYVDFD-TQERYPKKSAHWYKKLAETQVIE 467 (467)
T ss_pred hchhccccCccceEEECCC-CCccccccHHHHHHHHHHhcCCC
Confidence 9999999999999999997 57999999999999999998874
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=8e-99 Score=806.85 Aligned_cols=366 Identities=26% Similarity=0.399 Sum_probs=310.2
Q ss_pred ccCCCcccccccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEcc
Q 011240 17 KKSITKEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF 96 (490)
Q Consensus 17 ~~~~~~~~~~~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~ 96 (490)
.++.+++.||||||+|+|||+|||+||+++|||||+||||+|+| .|.+|++||+||++||++|+++||+||||||
T Consensus 64 ~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G-----~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~ 138 (504)
T PLN02814 64 YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNG-----RGLINPKGLLFYKNLIKELRSHGIEPHVTLY 138 (504)
T ss_pred cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCC-----CCCCCHHHHHHHHHHHHHHHHcCCceEEEec
Confidence 34567888999999999999999999999999999999999986 3689999999999999999999999999999
Q ss_pred CCCCcccccc-cCCCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchhccccccCCCCCCCCCChh---hhhhcCCC
Q 011240 97 HHSLPAWAGE-YGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDML---EVATSALP 172 (490)
Q Consensus 97 H~dlP~~l~~-~GGw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~---~~~~~~~~ 172 (490)
|||||+||++ +|||+|++++++|++||++||++|||+||+|+|||||++++..||..|.. ||.++.. ...+....
T Consensus 139 H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~ 217 (504)
T PLN02814 139 HYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSC 217 (504)
T ss_pred CCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccchhhhcccccCcC-CCCCCcccccccccCcch
Confidence 9999999987 59999999999999999999999999999999999999999999999985 5543310 00000011
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhh-cCCCCCcEEEEeeccccCCCC--hhcHHHHHHHhhcc-----------CCc---
Q 011240 173 TGVFNQAMHWMAIAHSKAYDYIHAK-STSTKSKVGVAHHVSFMRPYG--LFDVTAVTLANTLT-----------TFP--- 235 (490)
Q Consensus 173 ~~~~~~a~h~ll~AHa~A~~~ir~~-~~~~~~~VGi~~~~~~~~P~~--~~D~~aa~~~~~~~-----------~~p--- 235 (490)
.+.+ +|+||+++||++||+++|+. +..++++||++++..+++|++ ++|+.|+.+++.+. .+|
T Consensus 218 ~~~~-~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~ 296 (504)
T PLN02814 218 TETY-IAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEM 296 (504)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHH
Confidence 2334 89999999999999999964 334578999999999999986 67888876543221 112
Q ss_pred ---------c-----ccccCCCcceEEeecCCCceeeCCC-C-------cc---------cCCCCcccCCcccCchHHHH
Q 011240 236 ---------Y-----VDSISDRLDFIGINYYGQEVVSGPG-L-------KL---------VETDEYSESGRGVYPDGLFR 284 (490)
Q Consensus 236 ---------~-----~~~i~~~~DFiGiNyYt~~~v~~~~-~-------~~---------~~~~~~s~~g~~i~P~gL~~ 284 (490)
. .+.|++++||+|||||++.+|+..+ . .. ....+.+++||+|+|+||+.
T Consensus 297 ~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gWei~P~Gl~~ 376 (504)
T PLN02814 297 KRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGAYIISAGNSSFFEFDATPWGLEG 376 (504)
T ss_pred HHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCCcccccCCCcccccccccCCCCCcCCCCCeECcHHHHH
Confidence 1 1246899999999999999886421 0 00 01124677999999999999
Q ss_pred HHHHHHHHhCCCCCCEEEeecCCCC-----CCCcccHHHHHHHHHHHHHHHHcCCCeeEEEEEecccccCCcCCCCCccc
Q 011240 285 VLHQFHERYKHLNLPFIITENGVSD-----ETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFG 359 (490)
Q Consensus 285 ~L~~i~~rY~~~~~PI~ITENG~~~-----~~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~rFG 359 (490)
+|++++++|+ ++||+|||||++. .+|..|+.||++||.+|++||++||||+|||+|||||||||.+||++|||
T Consensus 377 ~L~~~~~rY~--~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfG 454 (504)
T PLN02814 377 ILEHIKQSYN--NPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFG 454 (504)
T ss_pred HHHHHHHhcC--CCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccc
Confidence 9999999997 4689999999973 45889999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCC-CccccccchHHHHHHHHHcCCCCc
Q 011240 360 LVAVDRAN-NLARIPRPSYHLFTKVVTTGKVTR 391 (490)
Q Consensus 360 L~~VD~~~-~~~R~pK~Sa~~y~~ii~~~~~~~ 391 (490)
|++||++| +++|+||+|++||+++|++...+.
T Consensus 455 LvyVD~~~~~~~R~pK~S~~wy~~~i~~~~~~~ 487 (504)
T PLN02814 455 MYYVNFSDPGRKRSPKLSASWYTGFLNGTIDVA 487 (504)
T ss_pred eEEECCCCCCcceeeecHHHHHHHHHhcCCChh
Confidence 99999987 589999999999999998865544
No 5
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=1.6e-98 Score=801.62 Aligned_cols=350 Identities=29% Similarity=0.490 Sum_probs=304.1
Q ss_pred CcccccccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCC
Q 011240 21 TKEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSL 100 (490)
Q Consensus 21 ~~~~~~~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dl 100 (490)
+++.||||||+|+|||+|||+||+++|||||+||||+|++ .|.+|++||+||++||++|+++||+|||||||||+
T Consensus 45 ~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G-----~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dl 119 (469)
T PRK13511 45 TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDG-----YGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDT 119 (469)
T ss_pred CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCC-----CCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence 6888999999999999999999999999999999999986 26799999999999999999999999999999999
Q ss_pred cccccccCCCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchhccccccCCCCCCCCCChhhhhhcCCCchhHHHHH
Q 011240 101 PAWAGEYGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFNQAM 180 (490)
Q Consensus 101 P~~l~~~GGw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~~a~ 180 (490)
|+||+++|||+|++++++|++||++||++||| ||+|+|||||++++..||..|.+|||..... .. ..+++
T Consensus 120 P~~L~~~GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~~~--------~~-~~~~~ 189 (469)
T PRK13511 120 PEALHSNGDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPGIKYDL--------AK-VFQSH 189 (469)
T ss_pred cHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEccchhhhhhcchhhcccCCCCCccH--------HH-HHHHH
Confidence 99999999999999999999999999999999 9999999999999999999999999964211 02 23899
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEEeeccccCCCC---hhcHHHHHHHhhcc-----------CCcc----------
Q 011240 181 HWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYG---LFDVTAVTLANTLT-----------TFPY---------- 236 (490)
Q Consensus 181 h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~---~~D~~aa~~~~~~~-----------~~p~---------- 236 (490)
||+++||++||++||+.. ++++||++++..+++|.+ ++|+.|+.+.+.+. .+|.
T Consensus 190 hn~llAHa~A~~~~~~~~--~~g~IGi~~~~~~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~ 267 (469)
T PRK13511 190 HNMMVAHARAVKLFKDKG--YKGEIGVVHALPTKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHIL 267 (469)
T ss_pred HHHHHHHHHHHHHHHHhC--CCCeEEEEecCceEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhh
Confidence 999999999999999864 478999999999999976 67888876543211 1120
Q ss_pred --------c-----cccC---CCcceEEeecCCCceeeCCC-C------------------cc----cC--CCCcccCCc
Q 011240 237 --------V-----DSIS---DRLDFIGINYYGQEVVSGPG-L------------------KL----VE--TDEYSESGR 275 (490)
Q Consensus 237 --------~-----~~i~---~~~DFiGiNyYt~~~v~~~~-~------------------~~----~~--~~~~s~~g~ 275 (490)
+ +.++ +++||+|||||++.+|+... . .. .. ..+.+++||
T Consensus 268 ~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw 347 (469)
T PRK13511 268 EANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDW 347 (469)
T ss_pred hhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCC
Confidence 0 1232 46899999999999886410 0 00 00 114467899
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCEEEeecCCCC---------CCCcccHHHHHHHHHHHHHHHHcCCCeeEEEEEeccc
Q 011240 276 GVYPDGLFRVLHQFHERYKHLNLPFIITENGVSD---------ETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISD 346 (490)
Q Consensus 276 ~i~P~gL~~~L~~i~~rY~~~~~PI~ITENG~~~---------~~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSllD 346 (490)
+|+|+||+.+|++++++|+. .+||+|||||++. .+|..|+.||++||.+|++||++||||+|||+|||+|
T Consensus 348 ~i~P~Gl~~~l~~~~~~Y~~-~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~D 426 (469)
T PRK13511 348 IIYPQGLYDQLMRIKKDYPN-YKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMD 426 (469)
T ss_pred eECcHHHHHHHHHHHHHcCC-CCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccccc
Confidence 99999999999999999972 1589999999982 2488999999999999999999999999999999999
Q ss_pred ccCCcCCCCCccceEEEcCCCCccccccchHHHHHHHHHcCCC
Q 011240 347 NWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFTKVVTTGKV 389 (490)
Q Consensus 347 nfEW~~Gy~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~~~~~ 389 (490)
||||.+||++||||++||++ +++|+||+|++||+++|+++++
T Consensus 427 nfEW~~Gy~~RfGl~~VD~~-~~~R~pK~S~~wy~~~i~~~~~ 468 (469)
T PRK13511 427 VFSWSNGYEKRYGLFYVDFE-TQERYPKKSAYWYKKLAETKVI 468 (469)
T ss_pred ccchhcCccCccceEEECCC-cCccccccHHHHHHHHHHhCCC
Confidence 99999999999999999997 5799999999999999999876
No 6
>PLN02998 beta-glucosidase
Probab=100.00 E-value=2.5e-98 Score=801.91 Aligned_cols=360 Identities=26% Similarity=0.405 Sum_probs=305.6
Q ss_pred CCcccccccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCC
Q 011240 20 ITKEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHS 99 (490)
Q Consensus 20 ~~~~~~~~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~d 99 (490)
.+++.||||||+|+|||+|||+||+++|||||+||||+|++ .|.+|++||+||++||++|+++||+|||||||||
T Consensus 72 ~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G-----~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~d 146 (497)
T PLN02998 72 AAGNVACDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSG-----RGPINPKGLQYYNNLIDELITHGIQPHVTLHHFD 146 (497)
T ss_pred CCCcccccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCC-----CCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCC
Confidence 47788999999999999999999999999999999999986 3679999999999999999999999999999999
Q ss_pred Ccccccc-cCCCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchhccccccCCCCCCCCCChhh--hhhc-CCCchh
Q 011240 100 LPAWAGE-YGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLE--VATS-ALPTGV 175 (490)
Q Consensus 100 lP~~l~~-~GGw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~--~~~~-~~~~~~ 175 (490)
+|+||++ +|||+|++++++|++||++||++|||+|++|+|||||++++..||..|.+|||.+.... .++. ......
T Consensus 147 lP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~ 226 (497)
T PLN02998 147 LPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEP 226 (497)
T ss_pred CCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHH
Confidence 9999987 59999999999999999999999999999999999999999999999999998643100 0000 001123
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-cCCCCCcEEEEeeccccCCCC--hhcHHHHHHHhhcc-----------CC-------
Q 011240 176 FNQAMHWMAIAHSKAYDYIHAK-STSTKSKVGVAHHVSFMRPYG--LFDVTAVTLANTLT-----------TF------- 234 (490)
Q Consensus 176 ~~~a~h~ll~AHa~A~~~ir~~-~~~~~~~VGi~~~~~~~~P~~--~~D~~aa~~~~~~~-----------~~------- 234 (490)
.+|+||+++||++||++||+. +..++++||++++..+++|.+ ++|+.|+.+.+.+. .+
T Consensus 227 -~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~ 305 (497)
T PLN02998 227 -YIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTN 305 (497)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHH
Confidence 389999999999999999975 224578999999999999975 67888775443211 11
Q ss_pred -----ccc-----cccCCCcceEEeecCCCceeeCCCCc--c-cC------C------CCcc-cCCcccCchHHHHHHHH
Q 011240 235 -----PYV-----DSISDRLDFIGINYYGQEVVSGPGLK--L-VE------T------DEYS-ESGRGVYPDGLFRVLHQ 288 (490)
Q Consensus 235 -----p~~-----~~i~~~~DFiGiNyYt~~~v~~~~~~--~-~~------~------~~~s-~~g~~i~P~gL~~~L~~ 288 (490)
|.+ +.|++++||+|||||++.+|+..... . .. . ...+ .+||+++|+||+.+|++
T Consensus 306 l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~P~Gl~~~L~~ 385 (497)
T PLN02998 306 VGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSIENEYANTPWSLQQILLY 385 (497)
T ss_pred HhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccCCCcCCCCccccccccccccccCCCcCCCCCCEEChHHHHHHHHH
Confidence 111 24688999999999999988641110 0 00 0 0122 37899999999999999
Q ss_pred HHHHhCCCCCCEEEeecCCCCC-----CCcccHHHHHHHHHHHHHHHHcCCCeeEEEEEecccccCCcCCCCCccceEEE
Q 011240 289 FHERYKHLNLPFIITENGVSDE-----TDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAV 363 (490)
Q Consensus 289 i~~rY~~~~~PI~ITENG~~~~-----~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~rFGL~~V 363 (490)
++++|+ ++||+|||||+++. +|+.|++||++||.+|++||++||||+|||+|||||||||.+||++||||++|
T Consensus 386 ~~~rY~--~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~V 463 (497)
T PLN02998 386 VKETYG--NPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYV 463 (497)
T ss_pred HHHHcC--CCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEE
Confidence 999997 45899999999853 48899999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CccccccchHHHHHHHHHcC
Q 011240 364 DRAN-NLARIPRPSYHLFTKVVTTG 387 (490)
Q Consensus 364 D~~~-~~~R~pK~Sa~~y~~ii~~~ 387 (490)
|+++ +++|+||+|++||+++|++.
T Consensus 464 D~~~~~~~R~pK~S~~wy~~ii~~~ 488 (497)
T PLN02998 464 DFKDPSLKRSPKLSAHWYSSFLKGT 488 (497)
T ss_pred CCCCCCcceecccHHHHHHHHHhcc
Confidence 9986 58999999999999999975
No 7
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-98 Score=778.27 Aligned_cols=358 Identities=34% Similarity=0.610 Sum_probs=316.0
Q ss_pred cccccccCCCcccccccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEE
Q 011240 12 YQQKMKKSITKEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKV 91 (490)
Q Consensus 12 ~~~~~~~~~~~~~~~~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~P 91 (490)
+.+++.++..+++|+||||+|+|||+|||+||+++|||||+||||+|.+ ..+.+|++||+||++|||+|+++||+|
T Consensus 41 ~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g----~~~e~N~~gl~fY~~l~del~~~gIep 116 (460)
T COG2723 41 IPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNG----DGGEVNEKGLRFYDRLFDELKARGIEP 116 (460)
T ss_pred cCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCC----CCCCcCHHHHHHHHHHHHHHHHcCCEE
Confidence 7788999999999999999999999999999999999999999999986 234899999999999999999999999
Q ss_pred EEEccCCCCccccccc-CCCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchhccccccCCCCCCCCCChhhhhhcC
Q 011240 92 MLTLFHHSLPAWAGEY-GGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSA 170 (490)
Q Consensus 92 ivTL~H~dlP~~l~~~-GGw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~ 170 (490)
+|||+|||+|+||++. |||+|++++++|++||+.||++|||+||+|+||||||+++..||+.|.+||+..+..
T Consensus 117 ~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~~~y~~~~~~p~~~~~~------ 190 (460)
T COG2723 117 FVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVELGYLYGGHPPGIVDPK------ 190 (460)
T ss_pred EEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhcccccccccCCCccCHH------
Confidence 9999999999999876 899999999999999999999999999999999999999999999999999877632
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeeccccCCCC--hhcHHHHHHHhhccC-----------Ccc-
Q 011240 171 LPTGVFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYG--LFDVTAVTLANTLTT-----------FPY- 236 (490)
Q Consensus 171 ~~~~~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~--~~D~~aa~~~~~~~~-----------~p~- 236 (490)
...||+||+++|||+|++++|+..+. .+||++++..+.+|.+ ++|+.||..++.+.. +|.
T Consensus 191 ----~~~qa~hh~~lA~A~avk~~~~~~~~--~kIG~~~~~~p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~ 264 (460)
T COG2723 191 ----AAYQVAHHMLLAHALAVKAIKKINPK--GKVGIILNLTPAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEY 264 (460)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhCCc--CceEEEeccCcCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHH
Confidence 23489999999999999999998762 2899999999999987 688988876544321 221
Q ss_pred ------------------ccccC-CCcceEEeecCCCc-eeeCCCC-------c----ccC--CCCcccCCcccCchHHH
Q 011240 237 ------------------VDSIS-DRLDFIGINYYGQE-VVSGPGL-------K----LVE--TDEYSESGRGVYPDGLF 283 (490)
Q Consensus 237 ------------------~~~i~-~~~DFiGiNyYt~~-~v~~~~~-------~----~~~--~~~~s~~g~~i~P~gL~ 283 (490)
++.++ ++.||||+|||++. +++.... . .+. ..+.|++||+|+|+||+
T Consensus 265 ~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~~~~~~~~~~~~~~~~~~~p~~~~sdwGWeI~P~GL~ 344 (460)
T COG2723 265 LEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAEPRYVSGYGPGGFFTSVPNPGLEVSDWGWEIYPKGLY 344 (460)
T ss_pred HHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeeccCCcCCcccccccccccCCCCCcccCCCceeChHHHH
Confidence 01133 46999999999944 4432211 1 111 23567999999999999
Q ss_pred HHHHHHHHHhCCCCCCEEEeecCCCC--------CCCcccHHHHHHHHHHHHHHHHcCCCeeEEEEEecccccCCcCCCC
Q 011240 284 RVLHQFHERYKHLNLPFIITENGVSD--------ETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYG 355 (490)
Q Consensus 284 ~~L~~i~~rY~~~~~PI~ITENG~~~--------~~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~ 355 (490)
.+|+++++||+ +|++|||||++. .+|+.||+||++||.+|++||++||+|+|||+||++||+||++||+
T Consensus 345 ~~l~~~~~rY~---~p~fItENG~G~~d~~~~~~i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~ 421 (460)
T COG2723 345 DILEKLYERYG---IPLFITENGLGVKDEVDFDGINDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYK 421 (460)
T ss_pred HHHHHHHHHhC---CCeEEecCCCCcccccccCCcCchHHHHHHHHHHHHHHHHHHcCCCcccceecccccccchhhccc
Confidence 99999999996 899999999772 2578999999999999999999999999999999999999999999
Q ss_pred CccceEEEcCCCCccccccchHHHHHHHHHcCC
Q 011240 356 PKFGLVAVDRANNLARIPRPSYHLFTKVVTTGK 388 (490)
Q Consensus 356 ~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~~~~ 388 (490)
+||||++||++++++|+||+|++||+++|++|+
T Consensus 422 kRYGli~VD~~~~~~R~~KkS~~WyK~vi~sng 454 (460)
T COG2723 422 KRYGLVYVDYDTDLERTPKKSFYWYKEVIESNG 454 (460)
T ss_pred cccccEEEcccccceeeecCceeeeHHHHhcCC
Confidence 999999999986689999999999999999988
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=5.8e-97 Score=789.82 Aligned_cols=351 Identities=27% Similarity=0.475 Sum_probs=300.7
Q ss_pred CcccccccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCC
Q 011240 21 TKEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSL 100 (490)
Q Consensus 21 ~~~~~~~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dl 100 (490)
+++.||||||+|+|||+|||+||+++||||||||||+|+| ..|.+|++||+||++||++|+++||+||||||||||
T Consensus 64 ~~~~a~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G----~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dl 139 (478)
T PRK09593 64 PAKEAIDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKG----DELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDC 139 (478)
T ss_pred CCCcccchHHhhHHHHHHHHHcCCCEEEEecchhhcccCC----CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 5788999999999999999999999999999999999985 235699999999999999999999999999999999
Q ss_pred cccccc-cCCCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchhcccccc-CCCC-CCCCCChhhhhhcCCCchhHH
Q 011240 101 PAWAGE-YGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYC-AGTW-PGGNPDMLEVATSALPTGVFN 177 (490)
Q Consensus 101 P~~l~~-~GGw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~~~~gY~-~G~~-pPg~~~~~~~~~~~~~~~~~~ 177 (490)
|+||++ +|||+|++++++|++||++||++|||+|++|+|||||++++..||. .|.+ |||.... ....
T Consensus 140 P~~L~~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~~----------~~~~ 209 (478)
T PRK09593 140 PMHLIEEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENKE----------QVKY 209 (478)
T ss_pred CHHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCchh----------hhHH
Confidence 999986 5999999999999999999999999999999999999999988886 5543 6654211 1123
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeeccccCCCC--hhcHHHHHHHhhcc----------CCc----------
Q 011240 178 QAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYG--LFDVTAVTLANTLT----------TFP---------- 235 (490)
Q Consensus 178 ~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~--~~D~~aa~~~~~~~----------~~p---------- 235 (490)
+|+||+|+||++||++||+.. ++++||++++..+++|.+ ++|+.|+.+.+.+. .+|
T Consensus 210 ~a~h~~llAHa~A~~~~~~~~--~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~fld~~~~G~YP~~~~~~~~~~ 287 (478)
T PRK09593 210 QAAHHELVASAIATKIAHEVD--PENKVGCMLAAGQYYPNTCHPEDVWAAMKEDRENYFFIDVQARGEYPNYAKKRFERE 287 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHhC--CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHHHHhhhhhhhhhCCCccHHHHHHHHhc
Confidence 899999999999999999865 478999999999999975 67888775432111 111
Q ss_pred ----cc-----cccC-CCcceEEeecCCCceeeCCCC--c--------ccCC--CCcccCCcccCchHHHHHHHHHHHHh
Q 011240 236 ----YV-----DSIS-DRLDFIGINYYGQEVVSGPGL--K--------LVET--DEYSESGRGVYPDGLFRVLHQFHERY 293 (490)
Q Consensus 236 ----~~-----~~i~-~~~DFiGiNyYt~~~v~~~~~--~--------~~~~--~~~s~~g~~i~P~gL~~~L~~i~~rY 293 (490)
.+ +.|+ +++||+|||||++.+|+..+. . ...+ .+.+++||+|+|+||+.+|++++++|
T Consensus 288 ~~~~~~~~~d~~~ik~g~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y 367 (478)
T PRK09593 288 GITIEMTEEDLELLKENTVDFISFSYYSSRVASGDPKVNEKTAGNIFASLKNPYLKASEWGWQIDPLGLRITLNTIWDRY 367 (478)
T ss_pred CCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCCCCccccccCCCcccCCCCCEECHHHHHHHHHHHHHHc
Confidence 01 1253 899999999999998874210 0 0111 14577999999999999999999999
Q ss_pred CCCCCCEEEeecCCCC---------CCCcccHHHHHHHHHHHHHHHH-cCCCeeEEEEEecccccCCcCC-CCCccceEE
Q 011240 294 KHLNLPFIITENGVSD---------ETDLIRRPYVIEHLLAVYAAMI-TGVPVIGYLFWTISDNWEWADG-YGPKFGLVA 362 (490)
Q Consensus 294 ~~~~~PI~ITENG~~~---------~~D~~Ri~yl~~hL~~v~~Ai~-dGv~V~GY~~WSllDnfEW~~G-y~~rFGL~~ 362 (490)
+ .||+|||||++. .+|+.|+.||++||.+|++||+ +||||+|||+|||||||||.+| |++||||++
T Consensus 368 ~---~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~ 444 (478)
T PRK09593 368 Q---KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIY 444 (478)
T ss_pred C---CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEE
Confidence 6 589999999983 2488899999999999999995 9999999999999999999999 999999999
Q ss_pred EcCCC----CccccccchHHHHHHHHHcCCCC
Q 011240 363 VDRAN----NLARIPRPSYHLFTKVVTTGKVT 390 (490)
Q Consensus 363 VD~~~----~~~R~pK~Sa~~y~~ii~~~~~~ 390 (490)
||+++ +++|+||+|++||+++|++++.+
T Consensus 445 VD~~~~~~~~~~R~pK~S~~wy~~ii~~~~~~ 476 (478)
T PRK09593 445 VDRDNEGKGTLKRSKKKSFDWYKKVIASNGED 476 (478)
T ss_pred ECCCCCCCcccceecccHHHHHHHHHHhCCcC
Confidence 99986 58999999999999999987763
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=9.1e-97 Score=787.94 Aligned_cols=350 Identities=27% Similarity=0.457 Sum_probs=297.7
Q ss_pred CcccccccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCC
Q 011240 21 TKEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSL 100 (490)
Q Consensus 21 ~~~~~~~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dl 100 (490)
+++.||||||+|+|||+|||+||+++||||||||||+|+| ..+.+|++||+||++||++|+++||+|||||+||||
T Consensus 58 ~~~~a~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G----~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dl 133 (476)
T PRK09589 58 PNHEAIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQG----DELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEM 133 (476)
T ss_pred CCcccccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCC----CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence 6788999999999999999999999999999999999985 235699999999999999999999999999999999
Q ss_pred cccccc-cCCCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchhccc-----ccc-CCC-CCCCCCChhhhhhcCCC
Q 011240 101 PAWAGE-YGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCML-----TYC-AGT-WPGGNPDMLEVATSALP 172 (490)
Q Consensus 101 P~~l~~-~GGw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~~~~-----gY~-~G~-~pPg~~~~~~~~~~~~~ 172 (490)
|+||++ +|||+|++++++|++||++||++|||+||+|+|||||++++.. ||. .|. +|||....
T Consensus 134 P~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~~--------- 204 (476)
T PRK09589 134 PYHLVTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDRE--------- 204 (476)
T ss_pred CHHHHHhcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhhhccccccCCccccccccCCCCchh---------
Confidence 999986 5999999999999999999999999999999999999998776 444 343 35553211
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeeccccCCCC--hhcHHHHHHHhhcc----------CCc-----
Q 011240 173 TGVFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYG--LFDVTAVTLANTLT----------TFP----- 235 (490)
Q Consensus 173 ~~~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~--~~D~~aa~~~~~~~----------~~p----- 235 (490)
....+|+||+++||++|++++|+..+ +++||++++..+++|.+ ++|+.|+.+...+. .+|
T Consensus 205 -~~~~~~~h~~llAha~A~~~~~~~~~--~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~f~d~~~~G~YP~~~~~ 281 (476)
T PRK09589 205 -QIMYQAAHYELVASALAVKTGHEINP--DFQIGCMIAMCPIYPLTCAPNDMMMATKAMHRRYWFTDVHVRGYYPQHILN 281 (476)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhCC--CCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHhccceecceeCCCCcHHHHH
Confidence 11248999999999999999998754 67999999999999975 67888876543211 111
Q ss_pred ---------cc-----ccc-CCCcceEEeecCCCceeeCC--CC--------cccCCC--CcccCCcccCchHHHHHHHH
Q 011240 236 ---------YV-----DSI-SDRLDFIGINYYGQEVVSGP--GL--------KLVETD--EYSESGRGVYPDGLFRVLHQ 288 (490)
Q Consensus 236 ---------~~-----~~i-~~~~DFiGiNyYt~~~v~~~--~~--------~~~~~~--~~s~~g~~i~P~gL~~~L~~ 288 (490)
.+ +.+ ++++||||||||++.+|+.. .. ....++ +.+++||+|+|+||+.+|++
T Consensus 282 ~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~ 361 (476)
T PRK09589 282 YFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSFATKFHEDNPQLDYVETRDLVSNPYVKASEWGWQIDPAGLRYSLNW 361 (476)
T ss_pred HHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCcccccccccCCCcccCCCCCccCcHHHHHHHHH
Confidence 01 124 68999999999999988631 10 011111 45779999999999999999
Q ss_pred HHHHhCCCCCCEEEeecCCCC---------CCCcccHHHHHHHHHHHHHHH-HcCCCeeEEEEEecccccCCcCC-CCCc
Q 011240 289 FHERYKHLNLPFIITENGVSD---------ETDLIRRPYVIEHLLAVYAAM-ITGVPVIGYLFWTISDNWEWADG-YGPK 357 (490)
Q Consensus 289 i~~rY~~~~~PI~ITENG~~~---------~~D~~Ri~yl~~hL~~v~~Ai-~dGv~V~GY~~WSllDnfEW~~G-y~~r 357 (490)
++++|+ .||+|||||++. .+|..|+.||++||.+|++|| ++||||+|||+|||||||||.+| |++|
T Consensus 362 ~~~~Y~---~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~R 438 (476)
T PRK09589 362 FWDHYQ---LPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKR 438 (476)
T ss_pred HHHhcC---CCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccc
Confidence 999996 689999999983 248889999999999999999 89999999999999999999999 9999
Q ss_pred cceEEEcCCC----CccccccchHHHHHHHHHcCCC
Q 011240 358 FGLVAVDRAN----NLARIPRPSYHLFTKVVTTGKV 389 (490)
Q Consensus 358 FGL~~VD~~~----~~~R~pK~Sa~~y~~ii~~~~~ 389 (490)
|||++||++| +++|+||+|++||+++|++|+.
T Consensus 439 fGlv~VD~~~~~~~t~~R~pK~S~~wy~~~i~~ng~ 474 (476)
T PRK09589 439 YGFIYVDKDNEGKGTLERSRKKSFYWYRDVIANNGE 474 (476)
T ss_pred eeeEEEcCCCCCCcccccccccHHHHHHHHHHhcCC
Confidence 9999999986 5799999999999999988654
No 10
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=2.1e-97 Score=792.18 Aligned_cols=359 Identities=35% Similarity=0.643 Sum_probs=301.2
Q ss_pred ccccccCCCcccccccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEE
Q 011240 13 QQKMKKSITKEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVM 92 (490)
Q Consensus 13 ~~~~~~~~~~~~~~~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~Pi 92 (490)
.+++.++..++.||||||+|+|||+|||+||+++||||||||||+|+| ..|.+|++|++||+++|++|+++||+||
T Consensus 41 ~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g----~~g~~n~~~~~~Y~~~i~~l~~~gi~P~ 116 (455)
T PF00232_consen 41 PGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWSRIFPDG----FEGKVNEEGLDFYRDLIDELLENGIEPI 116 (455)
T ss_dssp TTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTS----SSSSS-HHHHHHHHHHHHHHHHTT-EEE
T ss_pred cceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchhheeecc----cccccCHhHhhhhHHHHHHHHhhcccee
Confidence 567889999999999999999999999999999999999999999984 3589999999999999999999999999
Q ss_pred EEccCCCCcccccccCCCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchhccccccCCCCCCCCCChhhhhhcCCC
Q 011240 93 LTLFHHSLPAWAGEYGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALP 172 (490)
Q Consensus 93 vTL~H~dlP~~l~~~GGw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~ 172 (490)
|||+|||+|+||+++|||+|++++++|++||++||++|||+|++|+|||||++++..||..|.+|||..+..
T Consensus 117 vtL~H~~~P~~l~~~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~-------- 188 (455)
T PF00232_consen 117 VTLYHFDLPLWLEDYGGWLNRETVDWFARYAEFVFERFGDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLK-------- 188 (455)
T ss_dssp EEEESS--BHHHHHHTGGGSTHHHHHHHHHHHHHHHHHTTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHH--------
T ss_pred eeeeecccccceeecccccCHHHHHHHHHHHHHHHHHhCCCcceEEeccccceeeccccccccccccccccc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999965542
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeeccccCCCCh--hcH-HHHHHHhhcc-----------CC----
Q 011240 173 TGVFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYGL--FDV-TAVTLANTLT-----------TF---- 234 (490)
Q Consensus 173 ~~~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~~--~D~-~aa~~~~~~~-----------~~---- 234 (490)
...+++||+++||++||++||+.. ++++||++++..+++|.++ .|. .|+.+.+.+. .+
T Consensus 189 --~~~~~~h~~l~AHa~A~~~~~~~~--~~~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~ 264 (455)
T PF00232_consen 189 --AFYQAAHNLLLAHAKAVKAIKEKY--PDGKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEM 264 (455)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHT--CTSEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHH
T ss_pred --hhhHHHhhHHHHHHHHHHHHhhcc--cceEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHH
Confidence 234899999999999999999876 4899999999999999863 343 5554432211 12
Q ss_pred ----------ccc-----cccCCCcceEEeecCCCceeeCCCCcc--------------c-CCCCcccCCcccCchHHHH
Q 011240 235 ----------PYV-----DSISDRLDFIGINYYGQEVVSGPGLKL--------------V-ETDEYSESGRGVYPDGLFR 284 (490)
Q Consensus 235 ----------p~~-----~~i~~~~DFiGiNyYt~~~v~~~~~~~--------------~-~~~~~s~~g~~i~P~gL~~ 284 (490)
|.+ +.|++++||+|||||++..++...... . +..+.+++||+++|+||++
T Consensus 265 ~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~ 344 (455)
T PF00232_consen 265 KEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRD 344 (455)
T ss_dssp HHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHH
T ss_pred hhccccccccccccchhhhcccccchhhhhccccceeeccCccccccccccCCccccccccccccccccCcccccchHhh
Confidence 211 246899999999999999887543110 0 1123578999999999999
Q ss_pred HHHHHHHHhCCCCCCEEEeecCCCCCC--------CcccHHHHHHHHHHHHHHHHcCCCeeEEEEEecccccCCcCCCCC
Q 011240 285 VLHQFHERYKHLNLPFIITENGVSDET--------DLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGP 356 (490)
Q Consensus 285 ~L~~i~~rY~~~~~PI~ITENG~~~~~--------D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~ 356 (490)
+|++++++|+ ++||+|||||+++.+ |..|+.||++||.+|++||++||||+|||+|||||||||.+||++
T Consensus 345 ~L~~l~~~Y~--~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~ 422 (455)
T PF00232_consen 345 VLRYLKDRYG--NPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKK 422 (455)
T ss_dssp HHHHHHHHHT--SSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGGGGGGS
T ss_pred hhhhhccccC--CCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeeccccccccccCccC
Confidence 9999999998 589999999999643 789999999999999999999999999999999999999999999
Q ss_pred ccceEEEcCCCCccccccchHHHHHHHHHcCCC
Q 011240 357 KFGLVAVDRANNLARIPRPSYHLFTKVVTTGKV 389 (490)
Q Consensus 357 rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~~~~~ 389 (490)
||||++||+.++++|+||+|++||+++|++|++
T Consensus 423 rfGl~~VD~~~~~~R~pK~S~~~y~~~i~~ng~ 455 (455)
T PF00232_consen 423 RFGLVYVDFFDTLKRTPKKSAYWYKDFIRSNGF 455 (455)
T ss_dssp E--SEEEETTTTTEEEEBHHHHHHHHHHHHTEE
T ss_pred ccCceEEcCCCCcCeeeccHHHHHHHHHHhcCC
Confidence 999999997678999999999999999998763
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=6.3e-95 Score=773.38 Aligned_cols=350 Identities=26% Similarity=0.481 Sum_probs=299.3
Q ss_pred CcccccccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCC
Q 011240 21 TKEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSL 100 (490)
Q Consensus 21 ~~~~~~~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dl 100 (490)
+++.||||||+|+|||+|||+||+++|||||+||||+|++ ..+.+|++|++||+++|++|+++||+|||||+|||+
T Consensus 60 ~~~~A~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G----~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dl 135 (477)
T PRK15014 60 PNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKG----DEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEM 135 (477)
T ss_pred CCCcccCcccccHHHHHHHHHcCCCEEEecccceeeccCC----CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCC
Confidence 6788999999999999999999999999999999999985 235699999999999999999999999999999999
Q ss_pred cccccc-cCCCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchh-----ccccccC-CCC-CCCCCChhhhhhcCCC
Q 011240 101 PAWAGE-YGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVF-----CMLTYCA-GTW-PGGNPDMLEVATSALP 172 (490)
Q Consensus 101 P~~l~~-~GGw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~-----~~~gY~~-G~~-pPg~~~~~~~~~~~~~ 172 (490)
|+||++ +|||+|++++++|++||++||++|||+|++|+|||||+++ ++.||.. |.+ ||+....
T Consensus 136 P~~L~~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~~--------- 206 (477)
T PRK15014 136 PLHLVQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPE--------- 206 (477)
T ss_pred CHHHHHhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCchh---------
Confidence 999976 5999999999999999999999999999999999999987 6778874 765 4432110
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeeccccCCCC--hhcHHHHHHHhh--c-c-------CCc-----
Q 011240 173 TGVFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYG--LFDVTAVTLANT--L-T-------TFP----- 235 (490)
Q Consensus 173 ~~~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~--~~D~~aa~~~~~--~-~-------~~p----- 235 (490)
.. ..+|+||+++||++||+++|+..+ +++||++++..+++|.+ ++|+.|+.+... . + .+|
T Consensus 207 ~~-~~~~~h~~llAHa~A~~~~~~~~~--~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~f~d~~~~G~YP~~~~~ 283 (477)
T PRK15014 207 ET-MYQVLHHQFVASALAVKAARRINP--EMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYYPSYVLN 283 (477)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhCC--CCeEEEEEeCceeccCCCCHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 11 238999999999999999998753 78999999999999985 678888754321 1 1 111
Q ss_pred ---------cc-----ccc-CCCcceEEeecCCCceeeCCCC---------cccCCC--CcccCCcccCchHHHHHHHHH
Q 011240 236 ---------YV-----DSI-SDRLDFIGINYYGQEVVSGPGL---------KLVETD--EYSESGRGVYPDGLFRVLHQF 289 (490)
Q Consensus 236 ---------~~-----~~i-~~~~DFiGiNyYt~~~v~~~~~---------~~~~~~--~~s~~g~~i~P~gL~~~L~~i 289 (490)
.+ +.+ ++++||||||||++.+|+..+. ...++. +.+++||+|+|+||+.+|+++
T Consensus 284 ~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~ 363 (477)
T PRK15014 284 EWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLRYALCEL 363 (477)
T ss_pred HHHhcCCCCCCCHHHHHHHhcCCCCEEEEcceeCeeeccCCCCCCCccccccccCCCCcccCCCCCccCcHHHHHHHHHH
Confidence 01 124 5899999999999998874211 001121 357799999999999999999
Q ss_pred HHHhCCCCCCEEEeecCCCC---------CCCcccHHHHHHHHHHHHHHHH-cCCCeeEEEEEecccccCCcCC-CCCcc
Q 011240 290 HERYKHLNLPFIITENGVSD---------ETDLIRRPYVIEHLLAVYAAMI-TGVPVIGYLFWTISDNWEWADG-YGPKF 358 (490)
Q Consensus 290 ~~rY~~~~~PI~ITENG~~~---------~~D~~Ri~yl~~hL~~v~~Ai~-dGv~V~GY~~WSllDnfEW~~G-y~~rF 358 (490)
+++|+ +||+|||||++. .+|..|+.||++||.+|++||+ +||||+|||+|||||||||.+| |++||
T Consensus 364 ~~~Y~---~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~Rf 440 (477)
T PRK15014 364 YERYQ---KPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRY 440 (477)
T ss_pred HHhcC---CCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCccCcc
Confidence 99996 689999999983 2488899999999999999995 9999999999999999999999 99999
Q ss_pred ceEEEcCCC----CccccccchHHHHHHHHHcCCC
Q 011240 359 GLVAVDRAN----NLARIPRPSYHLFTKVVTTGKV 389 (490)
Q Consensus 359 GL~~VD~~~----~~~R~pK~Sa~~y~~ii~~~~~ 389 (490)
||++||+++ +++|+||+|++||+++|++|+.
T Consensus 441 Gl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~~ng~ 475 (477)
T PRK15014 441 GFIYVNKHDDGTGDMSRSRKKSFNWYKEVIASNGE 475 (477)
T ss_pred ceEEECCCCCCCcccceecccHHHHHHHHHHhcCC
Confidence 999999986 4799999999999999998764
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=3e-94 Score=767.12 Aligned_cols=351 Identities=26% Similarity=0.498 Sum_probs=302.5
Q ss_pred CcccccccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCC
Q 011240 21 TKEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSL 100 (490)
Q Consensus 21 ~~~~~~~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dl 100 (490)
+++.||||||+|+|||+||++||+++|||||+||||+|++ ..+.+|++|++||+++|++|+++||+|||||+|||+
T Consensus 62 ~~~~A~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g----~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~ 137 (474)
T PRK09852 62 PSHEAIDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQG----DELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDV 137 (474)
T ss_pred CCCccCchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCC----CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCC
Confidence 6788999999999999999999999999999999999985 235689999999999999999999999999999999
Q ss_pred cccccc-cCCCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchhcccccc-CCC-CCCCCCChhhhhhcCCCchhHH
Q 011240 101 PAWAGE-YGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYC-AGT-WPGGNPDMLEVATSALPTGVFN 177 (490)
Q Consensus 101 P~~l~~-~GGw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~~~~gY~-~G~-~pPg~~~~~~~~~~~~~~~~~~ 177 (490)
|+||++ +|||+|++++++|++||++||++|||+|++|+|||||++++..||. .|. +||+.... ... .
T Consensus 138 P~~l~~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~~---------~~~-~ 207 (474)
T PRK09852 138 PMHLVTEYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQD---------QVK-Y 207 (474)
T ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCch---------HhH-H
Confidence 999986 5999999999999999999999999999999999999999999996 665 47764211 112 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeeccccCCCC--hhcHHHHHHHhh---cc-------CCc----------
Q 011240 178 QAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYG--LFDVTAVTLANT---LT-------TFP---------- 235 (490)
Q Consensus 178 ~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~--~~D~~aa~~~~~---~~-------~~p---------- 235 (490)
+|+||+++||++||+++|+..+ +++||++++..+++|.+ ++|+.|+...+. +. .+|
T Consensus 208 ~~~hn~llAHa~A~~~~~~~~~--~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~~~~~~~~d~~~~G~YP~~~~~~~~~~ 285 (474)
T PRK09852 208 QAAHHELVASALATKIAHEVNP--QNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPAYSARVFREK 285 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC--CCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHhhhhcchhhCCCccHHHHHHHHhc
Confidence 8999999999999999998754 78999999999999976 678877743221 10 111
Q ss_pred ----c-----ccccCCCcceEEeecCCCceeeCCC------Cc----ccCC--CCcccCCcccCchHHHHHHHHHHHHhC
Q 011240 236 ----Y-----VDSISDRLDFIGINYYGQEVVSGPG------LK----LVET--DEYSESGRGVYPDGLFRVLHQFHERYK 294 (490)
Q Consensus 236 ----~-----~~~i~~~~DFiGiNyYt~~~v~~~~------~~----~~~~--~~~s~~g~~i~P~gL~~~L~~i~~rY~ 294 (490)
. .+.|++++||+|||||++.+|+... .. ...+ .+.+++||+|+|+||+.+|++++++|+
T Consensus 286 ~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~ 365 (474)
T PRK09852 286 GVTIDKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNMMYDRYQ 365 (474)
T ss_pred CCCCCCCHHHHHHhcCCCCEEEEccccCeecccCCCCCCCCcCCceecccCCCcccCCCCCeeChHHHHHHHHHHHHhcC
Confidence 1 1236789999999999999886421 00 0111 145779999999999999999999996
Q ss_pred CCCCCEEEeecCCCC---------CCCcccHHHHHHHHHHHHHHHHcCCCeeEEEEEecccccCCcCC-CCCccceEEEc
Q 011240 295 HLNLPFIITENGVSD---------ETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADG-YGPKFGLVAVD 364 (490)
Q Consensus 295 ~~~~PI~ITENG~~~---------~~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSllDnfEW~~G-y~~rFGL~~VD 364 (490)
.||+|||||++. .+|..|+.||++||.+|++||++||||+|||+|||||||||..| |++||||++||
T Consensus 366 ---~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD 442 (474)
T PRK09852 366 ---KPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVD 442 (474)
T ss_pred ---CCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEEC
Confidence 689999999983 24888999999999999999999999999999999999999999 99999999999
Q ss_pred CCC----CccccccchHHHHHHHHHcCCCC
Q 011240 365 RAN----NLARIPRPSYHLFTKVVTTGKVT 390 (490)
Q Consensus 365 ~~~----~~~R~pK~Sa~~y~~ii~~~~~~ 390 (490)
+++ +++|+||+|++||+++|++|+.+
T Consensus 443 ~~~~~~~t~~R~pK~S~~wy~~ii~~ng~~ 472 (474)
T PRK09852 443 RDDAGNGTLTRTRKKSFWWYKKVIASNGED 472 (474)
T ss_pred CCCCCCcccceecccHHHHHHHHHHhCCcc
Confidence 986 58999999999999999988764
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=5.1e-91 Score=736.35 Aligned_cols=346 Identities=33% Similarity=0.595 Sum_probs=301.9
Q ss_pred ccccCCCcccccccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEE
Q 011240 15 KMKKSITKEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLT 94 (490)
Q Consensus 15 ~~~~~~~~~~~~~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivT 94 (490)
++.++.+++.||||||+|+|||++||+||+++|||||+||||+|++ .|.+|++|++||+++|++|+++||+||||
T Consensus 39 ~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g-----~~~~n~~~~~~y~~~i~~l~~~gi~pivt 113 (427)
T TIGR03356 39 KVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEG-----TGPVNPKGLDFYDRLVDELLEAGIEPFVT 113 (427)
T ss_pred cccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCC-----CCCcCHHHHHHHHHHHHHHHHcCCeeEEe
Confidence 3446668888999999999999999999999999999999999985 26899999999999999999999999999
Q ss_pred ccCCCCcccccccCCCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchhccccccCCCCCCCCCChhhhhhcCCCch
Q 011240 95 LFHHSLPAWAGEYGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTG 174 (490)
Q Consensus 95 L~H~dlP~~l~~~GGw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~ 174 (490)
|+|||+|+||++.|||+|++++++|++||+.||++|||+|++|+|||||++++..||..|.+||+.++.. .
T Consensus 114 L~Hfd~P~~l~~~gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~~y~~G~~~P~~~~~~---------~ 184 (427)
T TIGR03356 114 LYHWDLPQALEDRGGWLNRDTAEWFAEYAAVVAERLGDRVKHWITLNEPWCSAFLGYGLGVHAPGLRDLR---------A 184 (427)
T ss_pred eccCCccHHHHhcCCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEecCcceecccchhhccCCCCCccHH---------H
Confidence 9999999999888999999999999999999999999999999999999999999999999999854321 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeeccccCCCC--hhcHHHHHHHhhcc-----------CCc------
Q 011240 175 VFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYG--LFDVTAVTLANTLT-----------TFP------ 235 (490)
Q Consensus 175 ~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~--~~D~~aa~~~~~~~-----------~~p------ 235 (490)
..+++||+++||++||+++|+..+ +++||++++..+++|.+ +.|+.++...+.+. .+|
T Consensus 185 -~~~~~hnll~Aha~A~~~~~~~~~--~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~ 261 (427)
T TIGR03356 185 -ALQAAHHLLLAHGLAVQALRANGP--GAQVGIVLNLTPVYPASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEY 261 (427)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCC--CCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHH
Confidence 238899999999999999998764 78999999999999975 67777775443211 122
Q ss_pred -----c-----ccccCCCcceEEeecCCCceeeCCCCc------ccCCCCcccCCcccCchHHHHHHHHHHHHhCCCCCC
Q 011240 236 -----Y-----VDSISDRLDFIGINYYGQEVVSGPGLK------LVETDEYSESGRGVYPDGLFRVLHQFHERYKHLNLP 299 (490)
Q Consensus 236 -----~-----~~~i~~~~DFiGiNyYt~~~v~~~~~~------~~~~~~~s~~g~~i~P~gL~~~L~~i~~rY~~~~~P 299 (490)
. .+.+++++||+|||||++.+|+..... ..+..+.+.+||+++|+||+.+|+++++||+ ++|
T Consensus 262 l~~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~--~pp 339 (427)
T TIGR03356 262 LGDAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTGAGFVEVPEGVPKTAMGWEVYPEGLYDLLLRLKEDYP--GPP 339 (427)
T ss_pred hccCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCCCCccccCCCCCcCCCCCeechHHHHHHHHHHHHhcC--CCC
Confidence 1 123578999999999999988742210 0112245678999999999999999999997 468
Q ss_pred EEEeecCCCC--------CCCcccHHHHHHHHHHHHHHHHcCCCeeEEEEEecccccCCcCCCCCccceEEEcCCCCccc
Q 011240 300 FIITENGVSD--------ETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRANNLAR 371 (490)
Q Consensus 300 I~ITENG~~~--------~~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~rFGL~~VD~~~~~~R 371 (490)
|+|||||++. .+|+.|+.||++||.+|++||++||||+|||+|||+|||||.+||++||||++||++ +++|
T Consensus 340 i~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~-~~~R 418 (427)
T TIGR03356 340 IYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYE-TQKR 418 (427)
T ss_pred EEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEecccccccchhcccccccceEEECCC-CCcc
Confidence 9999999984 248899999999999999999999999999999999999999999999999999997 5899
Q ss_pred cccchHHHH
Q 011240 372 IPRPSYHLF 380 (490)
Q Consensus 372 ~pK~Sa~~y 380 (490)
+||+|++||
T Consensus 419 ~~K~S~~wy 427 (427)
T TIGR03356 419 TPKDSAKWY 427 (427)
T ss_pred cccceeeeC
Confidence 999999997
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.65 E-value=1.5e-14 Score=143.64 Aligned_cols=248 Identities=20% Similarity=0.286 Sum_probs=158.1
Q ss_pred cccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEE--EEEccCCCCcccccccCCCCChhhHHHHHHHHHHHHH
Q 011240 51 IDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKV--MLTLFHHSLPAWAGEYGGWKLEKTIDYFMDFTRLVVD 128 (490)
Q Consensus 51 IsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~P--ivTL~H~dlP~~l~~~GGw~n~~~v~~F~~YA~~~f~ 128 (490)
+.|++|+|++ |.+|++.++ .+++.++++||++ .+.+.|...|.|+...+ .++..+.+.+|++.+++
T Consensus 1 ~kW~~~ep~~------G~~n~~~~D---~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~---~~~~~~~~~~~i~~v~~ 68 (254)
T smart00633 1 MKWDSTEPSR------GQFNFSGAD---AIVNFAKENGIKVRGHTLVWHSQTPDWVFNLS---KETLLARLENHIKTVVG 68 (254)
T ss_pred CCcccccCCC------CccChHHHH---HHHHHHHHCCCEEEEEEEeecccCCHhhhcCC---HHHHHHHHHHHHHHHHH
Confidence 3699999985 889988775 6999999999994 55667888999987433 56788999999999999
Q ss_pred HhcCCccEEEEccCcchhccccccCCCCCCCCCChhhhhhcCCCchhHHHHH-HHHHHHHHHHHHHHHhhcCCCCCcEEE
Q 011240 129 SVSDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFNQAM-HWMAIAHSKAYDYIHAKSTSTKSKVGV 207 (490)
Q Consensus 129 ~fgd~Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~~a~-h~ll~AHa~A~~~ir~~~~~~~~~VGi 207 (490)
||+++|..|-++|||......|+.... +..++ ..++ ..|+++.|+..| +.++
T Consensus 69 ry~g~i~~wdV~NE~~~~~~~~~~~~~--------------------w~~~~G~~~i---~~af~~ar~~~P--~a~l-- 121 (254)
T smart00633 69 RYKGKIYAWDVVNEALHDNGSGLRRSV--------------------WYQILGEDYI---EKAFRYAREADP--DAKL-- 121 (254)
T ss_pred HhCCcceEEEEeeecccCCCcccccch--------------------HHHhcChHHH---HHHHHHHHHhCC--CCEE--
Confidence 999999999999999853210110000 11111 1222 356677777765 4444
Q ss_pred Eeec-cccCCCChhcHHHHHHHhhccCCccccccCCCcceEEeecCCCceeeCCCCcccCCCCcccCCcccCchHHHHHH
Q 011240 208 AHHV-SFMRPYGLFDVTAVTLANTLTTFPYVDSISDRLDFIGINYYGQEVVSGPGLKLVETDEYSESGRGVYPDGLFRVL 286 (490)
Q Consensus 208 ~~~~-~~~~P~~~~D~~aa~~~~~~~~~p~~~~i~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~s~~g~~i~P~gL~~~L 286 (490)
.+|- ....+-...+ ....+.+. +..-..++|-||++.... .. . ..|..|...|
T Consensus 122 ~~Ndy~~~~~~~k~~-~~~~~v~~------l~~~g~~iDgiGlQ~H~~---~~---------------~-~~~~~~~~~l 175 (254)
T smart00633 122 FYNDYNTEEPNAKRQ-AIYELVKK------LKAKGVPIDGIGLQSHLS---LG---------------S-PNIAEIRAAL 175 (254)
T ss_pred EEeccCCcCccHHHH-HHHHHHHH------HHHCCCccceeeeeeeec---CC---------------C-CCHHHHHHHH
Confidence 3331 1111100000 00000111 111134589999964211 00 0 1245678888
Q ss_pred HHHHHHhCCCCCCEEEeecCCCCCCC-cccHHHHHHHHHHHHHHHHcCCCeeEEEEEecccccCCcCCCCCccceEEEcC
Q 011240 287 HQFHERYKHLNLPFIITENGVSDETD-LIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDR 365 (490)
Q Consensus 287 ~~i~~rY~~~~~PI~ITENG~~~~~D-~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~rFGL~~VD~ 365 (490)
..+.+. ++||+|||.++....+ ..+.+++++++..+.. . =.|.|.++|.+.|...|..+ .+.||+.-|+
T Consensus 176 ~~~~~~----g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~---~-p~v~gi~~Wg~~d~~~W~~~--~~~~L~d~~~ 245 (254)
T smart00633 176 DRFASL----GLEIQITELDISGYPNPQAQAADYEEVFKACLA---H-PAVTGVTVWGVTDKYSWLDG--GAPLLFDANY 245 (254)
T ss_pred HHHHHc----CCceEEEEeecCCCCcHHHHHHHHHHHHHHHHc---C-CCeeEEEEeCCccCCcccCC--CCceeECCCC
Confidence 877643 5899999999986543 3455566666654433 2 27899999999999999875 5678984333
Q ss_pred CCCccccccchHHH
Q 011240 366 ANNLARIPRPSYHL 379 (490)
Q Consensus 366 ~~~~~R~pK~Sa~~ 379 (490)
+|||++++
T Consensus 246 ------~~kpa~~~ 253 (254)
T smart00633 246 ------QPKPAYWA 253 (254)
T ss_pred ------CCChhhhc
Confidence 58998765
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.53 E-value=1.1e-12 Score=129.94 Aligned_cols=254 Identities=19% Similarity=0.252 Sum_probs=155.2
Q ss_pred ChHHHHHHHHhcCCCeEEecccccccc-CCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCC
Q 011240 31 DPDIELKLAKDTGVSVFRLGIDWSRIM-PAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGG 109 (490)
Q Consensus 31 ~~~eDi~lmk~lGv~~yRfSIsWsRI~-P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GG 109 (490)
..++|++.|+++|+|+.|+-|.|..++ |.+ .+.++...+++++++|+.|.++||.+||+||+. |.|....++
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~-----~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~~~ 94 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNP-----GYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGGDG 94 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTST-----TTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSSTST
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCC-----CccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccccc
Confidence 679999999999999999999998888 443 246899999999999999999999999999885 777554444
Q ss_pred CCC-hhhHHHHHHHHHHHHHHhcC--CccEEEEccCcchhccccccCCCCCCCCCChhhhhhcCCCchhHHHHHHHHHHH
Q 011240 110 WKL-EKTIDYFMDFTRLVVDSVSD--IVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFNQAMHWMAIA 186 (490)
Q Consensus 110 w~n-~~~v~~F~~YA~~~f~~fgd--~Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~~a~h~ll~A 186 (490)
+.+ ....+.|.++.+.++++|++ .|..|-.+|||...... ..|+.. .. . .+...
T Consensus 95 ~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~----~~w~~~---------------~~-~---~~~~~ 151 (281)
T PF00150_consen 95 YGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDD----ANWNAQ---------------NP-A---DWQDW 151 (281)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTST----TTTSHH---------------HT-H---HHHHH
T ss_pred cccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCc----cccccc---------------cc-h---hhhhH
Confidence 443 55788899999999999944 58899999999865321 011100 00 1 12233
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeeccccCCCChhcHHHHHHHhhccCCccccccCCCcceEEeecCCCceeeCCCCcccC
Q 011240 187 HSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYGLFDVTAVTLANTLTTFPYVDSISDRLDFIGINYYGQEVVSGPGLKLVE 266 (490)
Q Consensus 187 Ha~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~~~D~~aa~~~~~~~~~p~~~~i~~~~DFiGiNyYt~~~v~~~~~~~~~ 266 (490)
..+++++||+..+. ..|-+. ...+. .+....... .| ......|++.+|+|..........
T Consensus 152 ~~~~~~~Ir~~~~~--~~i~~~-~~~~~-----~~~~~~~~~-----~P---~~~~~~~~~~~H~Y~~~~~~~~~~---- 211 (281)
T PF00150_consen 152 YQRAIDAIRAADPN--HLIIVG-GGGWG-----ADPDGAAAD-----NP---NDADNNDVYSFHFYDPYDFSDQWN---- 211 (281)
T ss_dssp HHHHHHHHHHTTSS--SEEEEE-EHHHH-----TBHHHHHHH-----ST---TTTTTSEEEEEEEETTTCHHTTTS----
T ss_pred HHHHHHHHHhcCCc--ceeecC-CCccc-----cccchhhhc-----Cc---ccccCceeEEeeEeCCCCcCCccc----
Confidence 46788888988762 233221 11111 011111111 22 224678999999998532211100
Q ss_pred CCCcccCCcccCchHHHHHHHHHHHHhCCCCCCEEEeecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCeeEEEEEeccc
Q 011240 267 TDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISD 346 (490)
Q Consensus 267 ~~~~s~~g~~i~P~gL~~~L~~i~~rY~~~~~PI~ITENG~~~~~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSllD 346 (490)
... ......+...+..........++||+|+|.|++..+......+....+ ..+++. -.|.++|++=.
T Consensus 212 -----~~~-~~~~~~~~~~~~~~~~~~~~~g~pv~~gE~G~~~~~~~~~~~~~~~~~----~~~~~~--~~g~~~W~~~~ 279 (281)
T PF00150_consen 212 -----PGN-WGDASALESSFRAALNWAKKNGKPVVVGEFGWSNNDGNGSTDYADAWL----DYLEQN--GIGWIYWSWKP 279 (281)
T ss_dssp -----TCS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTTSCHHHHHHHHHH----HHHHHT--TCEEEECEESS
T ss_pred -----ccc-chhhhHHHHHHHHHHHHHHHcCCeEEEeCcCCcCCCCCcCHHHHHHHH----HHHHHC--CCeEEEEecCC
Confidence 000 001112222333322222222589999999998544333344444443 333222 24999998743
No 16
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.16 E-value=1.5e-08 Score=112.73 Aligned_cols=251 Identities=20% Similarity=0.176 Sum_probs=147.5
Q ss_pred ChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCccccc-----
Q 011240 31 DPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAG----- 105 (490)
Q Consensus 31 ~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~----- 105 (490)
.+..|+++||++|+|++|+| ..|.. ..+.+.|=+.||-++.-+--|....|..
T Consensus 314 ~~~~d~~l~K~~G~N~vR~s-----h~p~~-----------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~ 371 (604)
T PRK10150 314 LNVHDHNLMKWIGANSFRTS-----HYPYS-----------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEA 371 (604)
T ss_pred HHHHHHHHHHHCCCCEEEec-----cCCCC-----------------HHHHHHHHhcCcEEEEecccccccccccccccc
Confidence 46889999999999999995 23432 2577888899998886553332222221
Q ss_pred ---ccCCCC----ChhhHHHHHHHHHHHHHHhcCC--ccEEEEccCcchhccccccCCCCCCCCCChhhhhhcCCCchhH
Q 011240 106 ---EYGGWK----LEKTIDYFMDFTRLVVDSVSDI--VDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVF 176 (490)
Q Consensus 106 ---~~GGw~----n~~~v~~F~~YA~~~f~~fgd~--Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~ 176 (490)
....|. +++..+.+.+-++.+++++... |-.|..-||+..- . + . .
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~---------~-~----~------------~ 425 (604)
T PRK10150 372 GNKPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASR---------E-Q----G------------A 425 (604)
T ss_pred cccccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCcc---------c-h----h------------H
Confidence 112232 3567788888899999999885 7799999997310 0 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeeccccCCCChhcHHHHHHHhhccCCccccccCCCcceEEeecCCCce
Q 011240 177 NQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYGLFDVTAVTLANTLTTFPYVDSISDRLDFIGINYYGQEV 256 (490)
Q Consensus 177 ~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~~~D~~aa~~~~~~~~~p~~~~i~~~~DFiGiNyYt~~~ 256 (490)
...+ ...++++|+.+++ --|..+.+... .+ ..+.....+|++|+|.|...+
T Consensus 426 ----~~~~---~~l~~~~k~~Dpt--R~vt~~~~~~~-~~-------------------~~~~~~~~~Dv~~~N~Y~~wy 476 (604)
T PRK10150 426 ----REYF---APLAELTRKLDPT--RPVTCVNVMFA-TP-------------------DTDTVSDLVDVLCLNRYYGWY 476 (604)
T ss_pred ----HHHH---HHHHHHHHhhCCC--CceEEEecccC-Cc-------------------ccccccCcccEEEEcccceec
Confidence 0111 3445666777653 22433321110 00 001124568999999885422
Q ss_pred eeCCCCcccCCCCcccCCcccCc-hHHHHHHHHHHHHhCCCCCCEEEeecCCCCC-----------CCcccHHHHHHHHH
Q 011240 257 VSGPGLKLVETDEYSESGRGVYP-DGLFRVLHQFHERYKHLNLPFIITENGVSDE-----------TDLIRRPYVIEHLL 324 (490)
Q Consensus 257 v~~~~~~~~~~~~~s~~g~~i~P-~gL~~~L~~i~~rY~~~~~PI~ITENG~~~~-----------~D~~Ri~yl~~hL~ 324 (490)
... |....+ ..+...+....+.| ++|++|||.|.+.. +++....|+.+|+
T Consensus 477 ~~~--------------~~~~~~~~~~~~~~~~~~~~~---~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~- 538 (604)
T PRK10150 477 VDS--------------GDLETAEKVLEKELLAWQEKL---HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYH- 538 (604)
T ss_pred CCC--------------CCHHHHHHHHHHHHHHHHHhc---CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHH-
Confidence 110 000000 12334455555555 48999999996431 1223444455444
Q ss_pred HHHHHHHcCCCeeEEEEEeccccc-C---CcCCCCCccceEEEcCCCCccccccchHHHHHHHHHc
Q 011240 325 AVYAAMITGVPVIGYLFWTISDNW-E---WADGYGPKFGLVAVDRANNLARIPRPSYHLFTKVVTT 386 (490)
Q Consensus 325 ~v~~Ai~dGv~V~GY~~WSllDnf-E---W~~Gy~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~~ 386 (490)
+++++-=.+.|-|+|.+.|-. + |..| ....||+ | ..|+||++++.|+++-+.
T Consensus 539 ---~~~~~~p~~~G~~iW~~~D~~~~~g~~~~~-g~~~Gl~--~----~dr~~k~~~~~~k~~~~~ 594 (604)
T PRK10150 539 ---RVFDRVPAVVGEQVWNFADFATSQGILRVG-GNKKGIF--T----RDRQPKSAAFLLKKRWTG 594 (604)
T ss_pred ---HHHhcCCceEEEEEEeeeccCCCCCCcccC-CCcceeE--c----CCCCChHHHHHHHHHhhc
Confidence 455444578999999999932 1 2111 2467997 3 347899999999998753
No 17
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.06 E-value=6.5e-08 Score=99.56 Aligned_cols=257 Identities=21% Similarity=0.327 Sum_probs=144.5
Q ss_pred HHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCC---CcccccccCC
Q 011240 33 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHS---LPAWAGEYGG 109 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~d---lP~~l~~~GG 109 (490)
++=+++||+.|+|+.|+-+ | +.|.. .|.-| +++-..+..+.+++||+.++++|--| -|.--.....
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~-----~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~a 95 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYD-----GGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAA 95 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TT-----TTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcc-----cccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCcc
Confidence 4568999999999999977 4 44432 14444 55667899999999999999997533 2332233468
Q ss_pred CCC---hhhHHHHHHHHHHHHHHh---cCCccEEEEccCcchhccccccCCCCCCCCCChhhhhhcCCCchhHHHHHHHH
Q 011240 110 WKL---EKTIDYFMDFTRLVVDSV---SDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFNQAMHWM 183 (490)
Q Consensus 110 w~n---~~~v~~F~~YA~~~f~~f---gd~Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~~a~h~l 183 (490)
|.+ .+..+...+|.+-+.+.+ |-.++++.+=||.+.-. .||-|.... +.. +-.|
T Consensus 96 W~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gm-------lwp~g~~~~------------~~~-~a~l 155 (332)
T PF07745_consen 96 WANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGM-------LWPDGKPSN------------WDN-LAKL 155 (332)
T ss_dssp CTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGES-------TBTTTCTT-------------HHH-HHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccc-------cCcCCCccC------------HHH-HHHH
Confidence 988 678888899999887766 44688999999988532 244443211 211 2245
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEeeccccCCCChhcHHHHH-HHhhccCCccccccCCCcceEEeecCCCceeeCCCC
Q 011240 184 AIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYGLFDVTAVT-LANTLTTFPYVDSISDRLDFIGINYYGQEVVSGPGL 262 (490)
Q Consensus 184 l~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~~~D~~aa~-~~~~~~~~p~~~~i~~~~DFiGiNyYt~~~v~~~~~ 262 (490)
+. .+++++|+..+ +.+| ++|..- | .+..... +.+. +......+|+||++||..
T Consensus 156 l~---ag~~AVr~~~p--~~kV--~lH~~~--~---~~~~~~~~~f~~------l~~~g~d~DviGlSyYP~-------- 209 (332)
T PF07745_consen 156 LN---AGIKAVREVDP--NIKV--MLHLAN--G---GDNDLYRWFFDN------LKAAGVDFDVIGLSYYPF-------- 209 (332)
T ss_dssp HH---HHHHHHHTHSS--TSEE--EEEES---T---TSHHHHHHHHHH------HHHTTGG-SEEEEEE-ST--------
T ss_pred HH---HHHHHHHhcCC--CCcE--EEEECC--C---CchHHHHHHHHH------HHhcCCCcceEEEecCCC--------
Confidence 53 55566676655 4556 444431 1 1221111 0111 111235789999999962
Q ss_pred cccCCCCcccCCcccCchHHHHHHHHHHHHhCCCCCCEEEeecCCCCC---CCcc---------------cHHHHHHHHH
Q 011240 263 KLVETDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDE---TDLI---------------RRPYVIEHLL 324 (490)
Q Consensus 263 ~~~~~~~~s~~g~~i~P~gL~~~L~~i~~rY~~~~~PI~ITENG~~~~---~D~~---------------Ri~yl~~hL~ 324 (490)
|.-....|...|..+.++|+ +||+|+|+|++.. .|.. =.+=-...|.
T Consensus 210 ------------w~~~l~~l~~~l~~l~~ry~---K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~ 274 (332)
T PF07745_consen 210 ------------WHGTLEDLKNNLNDLASRYG---KPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLR 274 (332)
T ss_dssp ------------TST-HHHHHHHHHHHHHHHT----EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHH
T ss_pred ------------CcchHHHHHHHHHHHHHHhC---CeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHH
Confidence 22245679999999999996 8999999998742 0100 0111234455
Q ss_pred HHHHHHHc--CCCeeEEEEEecccc-----cCCcCCCC-CccceE
Q 011240 325 AVYAAMIT--GVPVIGYLFWTISDN-----WEWADGYG-PKFGLV 361 (490)
Q Consensus 325 ~v~~Ai~d--Gv~V~GY~~WSllDn-----fEW~~Gy~-~rFGL~ 361 (490)
.+.+++.+ +-...|.|+|----. .+|..|.+ ..-+|+
T Consensus 275 ~l~~~v~~~p~~~g~GvfYWeP~w~~~~~~~~~~~g~~w~n~~lF 319 (332)
T PF07745_consen 275 DLINAVKNVPNGGGLGVFYWEPAWIPVENGWDWGGGSSWDNQALF 319 (332)
T ss_dssp HHHHHHHTS--TTEEEEEEE-TT-GGGTTHHHHTTTSSSSBGSSB
T ss_pred HHHHHHHHhccCCeEEEEeeccccccCCcccccCCCCCccccccC
Confidence 56666653 578999999954322 23344543 234777
No 18
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=98.97 E-value=9.5e-10 Score=115.17 Aligned_cols=108 Identities=26% Similarity=0.458 Sum_probs=84.6
Q ss_pred cChHHHHHHHHhcCCCeEEe-ccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccc--
Q 011240 30 SDPDIELKLAKDTGVSVFRL-GIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGE-- 106 (490)
Q Consensus 30 ~~~~eDi~lmk~lGv~~yRf-SIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~-- 106 (490)
+.+++|+++||++|+|++|+ .++|++|+|++ |.+|.+.+ +.+|+.+.++||++++.+.....|.||.+
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e------G~ydF~~l---D~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~ 80 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE------GQYDFSWL---DRVLDLAAKHGIKVILGTPTAAPPAWLYDKY 80 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT------TB---HHH---HHHHHHHHCTT-EEEEEECTTTS-HHHHCCS
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC------CeeecHHH---HHHHHHHHhccCeEEEEecccccccchhhhc
Confidence 67899999999999999996 57999999986 89998765 58999999999999999999999999842
Q ss_pred --------------cCCC-----CChhhHHHHHHHHHHHHHHhcCC--ccEEEEccCcchh
Q 011240 107 --------------YGGW-----KLEKTIDYFMDFTRLVVDSVSDI--VDYWVTFNEPHVF 146 (490)
Q Consensus 107 --------------~GGw-----~n~~~v~~F~~YA~~~f~~fgd~--Vk~W~T~NEP~~~ 146 (490)
.|+. .++...+.+.++++.++++|++. |-.|.+-|||...
T Consensus 81 Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 81 PEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp GCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred ccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 1222 23566778888888889999985 8899999999763
No 19
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.95 E-value=1.3e-08 Score=104.68 Aligned_cols=273 Identities=21% Similarity=0.319 Sum_probs=158.6
Q ss_pred HHHHHhcCCCeEEec--cccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEE--EccCCCCcccccccCCCC
Q 011240 36 LKLAKDTGVSVFRLG--IDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVML--TLFHHSLPAWAGEYGGWK 111 (490)
Q Consensus 36 i~lmk~lGv~~yRfS--IsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~Piv--TL~H~dlP~~l~~~GGw~ 111 (490)
+..+-.-.+|..-.. .-|..++|.+ |.+|.+.. +.+++.+.++||++-- -+.|--+|.|+....-+.
T Consensus 27 ~~~~~~~~Fn~~t~eN~~Kw~~~e~~~------g~~~~~~~---D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~ 97 (320)
T PF00331_consen 27 YRELFAKHFNSVTPENEMKWGSIEPEP------GRFNFESA---DAILDWARENGIKVRGHTLVWHSQTPDWVFNLANGS 97 (320)
T ss_dssp HHHHHHHH-SEEEESSTTSHHHHESBT------TBEE-HHH---HHHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSS
T ss_pred HHHHHHHhCCeeeeccccchhhhcCCC------CccCccch---hHHHHHHHhcCcceeeeeEEEcccccceeeeccCCC
Confidence 444444556666654 8999999985 78998765 5899999999999874 344778999997532233
Q ss_pred Chh---hHHHHHHHHHHHHHHhcC--CccEEEEccCcchhccccccCCCCCCCCCChhhhhhcCCCchhHHHHH-HHHHH
Q 011240 112 LEK---TIDYFMDFTRLVVDSVSD--IVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFNQAM-HWMAI 185 (490)
Q Consensus 112 n~~---~v~~F~~YA~~~f~~fgd--~Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~~a~-h~ll~ 185 (490)
..+ ......+|.+.++++|++ +|..|=.+|||.-... .+.+.++. .+..++ ...+
T Consensus 98 ~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~-------~~~~~r~~-----------~~~~~lG~~yi- 158 (320)
T PF00331_consen 98 PDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDG-------NPGGLRDS-----------PWYDALGPDYI- 158 (320)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTS-------SSSSBCTS-----------HHHHHHTTCHH-
T ss_pred cccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCC-------ccccccCC-----------hhhhcccHhHH-
Confidence 233 788899999999999995 8999999999974321 01111110 011111 1112
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeec-cccCCCChhcHHHHHHHhhccCCccccccCCCcceEEeecCCCceeeCCCCcc
Q 011240 186 AHSKAYDYIHAKSTSTKSKVGVAHHV-SFMRPYGLFDVTAVTLANTLTTFPYVDSISDRLDFIGINYYGQEVVSGPGLKL 264 (490)
Q Consensus 186 AHa~A~~~ir~~~~~~~~~VGi~~~~-~~~~P~~~~D~~aa~~~~~~~~~p~~~~i~~~~DFiGiNyYt~~~v~~~~~~~ 264 (490)
..|++.-|+..| +++. ..|- ....+ +...+. .+... .+..-.-++|=||+.-.- ..
T Consensus 159 --~~aF~~A~~~~P--~a~L--~~NDy~~~~~----~k~~~~-~~lv~---~l~~~gvpIdgIG~Q~H~----~~----- 215 (320)
T PF00331_consen 159 --ADAFRAAREADP--NAKL--FYNDYNIESP----AKRDAY-LNLVK---DLKARGVPIDGIGLQSHF----DA----- 215 (320)
T ss_dssp --HHHHHHHHHHHT--TSEE--EEEESSTTST----HHHHHH-HHHHH---HHHHTTHCS-EEEEEEEE----ET-----
T ss_pred --HHHHHHHHHhCC--CcEE--Eeccccccch----HHHHHH-HHHHH---HHHhCCCccceechhhcc----CC-----
Confidence 345555566655 3333 3332 22112 111111 11000 011112358999997531 10
Q ss_pred cCCCCcccCCcccCchHHHHHHHHHHHHhCCCCCCEEEeecCCCCCC-------CcccHHHHHHHHHHHHHHHHcCCCee
Q 011240 265 VETDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDET-------DLIRRPYVIEHLLAVYAAMITGVPVI 337 (490)
Q Consensus 265 ~~~~~~s~~g~~i~P~gL~~~L~~i~~rY~~~~~PI~ITENG~~~~~-------D~~Ri~yl~~hL~~v~~Ai~dGv~V~ 337 (490)
+.. |..+...|+++.+ .++||.|||.-+.+.+ +..+..++++.+..+...-.. .|.
T Consensus 216 ---------~~~--~~~i~~~l~~~~~----~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~--~v~ 278 (320)
T PF00331_consen 216 ---------GYP--PEQIWNALDRFAS----LGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPA--AVE 278 (320)
T ss_dssp ---------TSS--HHHHHHHHHHHHT----TTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHC--TEE
T ss_pred ---------CCC--HHHHHHHHHHHHH----cCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCcc--CCC
Confidence 011 6678888877643 2599999999987643 234666666666554432111 899
Q ss_pred EEEEEecccccCCcCCCCC-ccceEEEcCCCCccccccchHHHHHH
Q 011240 338 GYLFWTISDNWEWADGYGP-KFGLVAVDRANNLARIPRPSYHLFTK 382 (490)
Q Consensus 338 GY~~WSllDnfEW~~Gy~~-rFGL~~VD~~~~~~R~pK~Sa~~y~~ 382 (490)
|.++|.+.|+..|-.+... +=+|+.-| -+|||+++.+.+
T Consensus 279 git~Wg~~D~~sW~~~~~~~~~~lfd~~------~~~Kpa~~~~~~ 318 (320)
T PF00331_consen 279 GITWWGFTDGYSWRPDTPPDRPLLFDED------YQPKPAYDAIVD 318 (320)
T ss_dssp EEEESSSBTTGSTTGGHSEG--SSB-TT------SBB-HHHHHHHH
T ss_pred EEEEECCCCCCcccCCCCCCCCeeECCC------cCCCHHHHHHHh
Confidence 9999999999999876333 33566322 259999888765
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.94 E-value=7.3e-08 Score=104.51 Aligned_cols=287 Identities=22% Similarity=0.333 Sum_probs=133.4
Q ss_pred hHHHHHHHH-hcCCCeEEec--c--ccccccC-CCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCccccc
Q 011240 32 PDIELKLAK-DTGVSVFRLG--I--DWSRIMP-AEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAG 105 (490)
Q Consensus 32 ~~eDi~lmk-~lGv~~yRfS--I--sWsRI~P-~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~ 105 (490)
+.+.+..++ ++|++.+||- + +..-... ++ +|. ..+|+.-+ |.++|.|+++||+|+|.|-. +|.++.
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~--~~~-~~Ynf~~l---D~i~D~l~~~g~~P~vel~f--~p~~~~ 112 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDE--DGI-PPYNFTYL---DQILDFLLENGLKPFVELGF--MPMALA 112 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEET--TEE-EEE--HHH---HHHHHHHHHCT-EEEEEE-S--B-GGGB
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhcccccc--CCC-CcCChHHH---HHHHHHHHHcCCEEEEEEEe--chhhhc
Confidence 345555554 9999999986 3 2222222 21 111 12788766 58999999999999999976 777663
Q ss_pred c-------cCCCCC-hhhHHHHHHHHH----HHHHHhcC-Ccc--EEEEccCcchhccccccCCCCCCCCCChhhhhhcC
Q 011240 106 E-------YGGWKL-EKTIDYFMDFTR----LVVDSVSD-IVD--YWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSA 170 (490)
Q Consensus 106 ~-------~GGw~n-~~~v~~F~~YA~----~~f~~fgd-~Vk--~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~ 170 (490)
. +.||.+ |+..+.+.++++ .+.+|||. .|. +|.++|||+...++. .+. .
T Consensus 113 ~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~-------~~~--~------- 176 (486)
T PF01229_consen 113 SGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWW-------DGT--P------- 176 (486)
T ss_dssp SS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSG-------GG---H-------
T ss_pred CCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccC-------CCC--H-------
Confidence 2 123332 455566666654 44566663 465 568999999753321 110 0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeeccccCCCChhcHHHHHHHhhccCCccccccCCCcceEEee
Q 011240 171 LPTGVFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYGLFDVTAVTLANTLTTFPYVDSISDRLDFIGIN 250 (490)
Q Consensus 171 ~~~~~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~~~D~~aa~~~~~~~~~p~~~~i~~~~DFiGiN 250 (490)
..|. .+. ..+++++|+..| ..+||---.+ + +..+.. ....+ ++..-.-++||+.++
T Consensus 177 ---~ey~----~ly---~~~~~~iK~~~p--~~~vGGp~~~-~----~~~~~~-~~~l~------~~~~~~~~~DfiS~H 232 (486)
T PF01229_consen 177 ---EEYF----ELY---DATARAIKAVDP--ELKVGGPAFA-W----AYDEWC-EDFLE------FCKGNNCPLDFISFH 232 (486)
T ss_dssp ---HHHH----HHH---HHHHHHHHHH-T--TSEEEEEEEE-T----T-THHH-HHHHH------HHHHCT---SEEEEE
T ss_pred ---HHHH----HHH---HHHHHHHHHhCC--CCcccCcccc-c----cHHHHH-HHHHH------HHhcCCCCCCEEEEE
Confidence 1131 233 456666777765 6788853111 1 100110 00000 121223568999999
Q ss_pred cCCCceeeCCCCcccCCCCcccC-C-cccCchHHHHHHHHHHHHhCCCCCCEEEeecCCCCC-----CCc-ccHHHHHHH
Q 011240 251 YYGQEVVSGPGLKLVETDEYSES-G-RGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDE-----TDL-IRRPYVIEH 322 (490)
Q Consensus 251 yYt~~~v~~~~~~~~~~~~~s~~-g-~~i~P~gL~~~L~~i~~rY~~~~~PI~ITENG~~~~-----~D~-~Ri~yl~~h 322 (490)
.|........ . ....... . ..+.| .+..+...+.+ -...+.|+++||-+.+-. +|. .+..|+...
T Consensus 233 ~y~~~~~~~~----~-~~~~~~~~~~~~~~~-~~~~~~~~~~~-e~~p~~~~~~tE~n~~~~~~~~~~dt~~~aA~i~k~ 305 (486)
T PF01229_consen 233 SYGTDSAEDI----N-ENMYERIEDSRRLFP-ELKETRPIIND-EADPNLPLYITEWNASISPRNPQHDTCFKAAYIAKN 305 (486)
T ss_dssp EE-BESESE-----S-S-EEEEB--HHHHHH-HHHHHHHHHHT-SSSTT--EEEEEEES-SSTT-GGGGSHHHHHHHHH-
T ss_pred eccccccccc----c-hhHHhhhhhHHHHHH-HHHHHHHHHhh-ccCCCCceeecccccccCCCcchhccccchhhHHHH
Confidence 9985432110 0 0000000 0 01111 22222222222 222357899999776532 232 234444332
Q ss_pred HHHHHHHHHcCCCeeEEEEEecccccCCcCC----CCCccceEEEcCCCCccccccchHHHHHHHH
Q 011240 323 LLAVYAAMITGVPVIGYLFWTISDNWEWADG----YGPKFGLVAVDRANNLARIPRPSYHLFTKVV 384 (490)
Q Consensus 323 L~~v~~Ai~dGv~V~GY~~WSllDnfEW~~G----y~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii 384 (490)
++. ..|..+-++.+|++.|.||=..- +.--|||+..+ .++|||++.|.=+-
T Consensus 306 ---lL~--~~~~~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~------gI~KPa~~A~~~L~ 360 (486)
T PF01229_consen 306 ---LLS--NDGAFLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKL------GIPKPAYYAFQLLN 360 (486)
T ss_dssp ---HHH--HGGGT-SEEEES-SBS---TTSS-SSSSSS-S-SEECC------CEE-HHHHHHHHHT
T ss_pred ---HHH--hhhhhhhhhhccchhhhhhccCCCCCceecchhhhhcc------CCCchHHHHHHHHH
Confidence 111 24667778999999999984321 33458999765 47999988887553
No 21
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.63 E-value=4e-06 Score=84.68 Aligned_cols=262 Identities=23% Similarity=0.365 Sum_probs=153.5
Q ss_pred cccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEE-Ec-cCCCCcccccccCCCCChhhHHHHHHHHHHHHH
Q 011240 51 IDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVML-TL-FHHSLPAWAGEYGGWKLEKTIDYFMDFTRLVVD 128 (490)
Q Consensus 51 IsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~Piv-TL-~H~dlP~~l~~~GGw~n~~~v~~F~~YA~~~f~ 128 (490)
+-|--|+|+ .|.+|+++-| .+.+.+++|||.--- || .|--.|.|+... -+..+...+...++-..|+.
T Consensus 67 mKwe~i~p~------~G~f~Fe~AD---~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~~-e~~~~~~~~~~e~hI~tV~~ 136 (345)
T COG3693 67 MKWEAIEPE------RGRFNFEAAD---AIANFARKHNMPLHGHTLVWHSQVPDWLFGD-ELSKEALAKMVEEHIKTVVG 136 (345)
T ss_pred cccccccCC------CCccCccchH---HHHHHHHHcCCeeccceeeecccCCchhhcc-ccChHHHHHHHHHHHHHHHH
Confidence 346666665 3789988875 799999999997433 33 355788898421 15668899999999999999
Q ss_pred HhcCCccEEEEccCcchhccccccCCCCCCCCCChhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEEE
Q 011240 129 SVSDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVA 208 (490)
Q Consensus 129 ~fgd~Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~ 208 (490)
||.+.|..|=++|||-- ...++-.-.|--+.. .+ . ++ ..|++.-|+..| +++.-+.
T Consensus 137 rYkg~~~sWDVVNE~vd-d~g~~R~s~w~~~~~----------gp----d---~I----~~aF~~AreadP--~AkL~~N 192 (345)
T COG3693 137 RYKGSVASWDVVNEAVD-DQGSLRRSAWYDGGT----------GP----D---YI----KLAFHIAREADP--DAKLVIN 192 (345)
T ss_pred hccCceeEEEecccccC-CCchhhhhhhhccCC----------cc----H---HH----HHHHHHHHhhCC--CceEEee
Confidence 99999999999999854 222222111111000 00 1 12 245566666665 5555331
Q ss_pred eeccccCCCChhcHHHHH--HHhhccCCccccccCC-CcceEEeecCCCceeeCCCCcccCCCCcccCCcccCchHHHHH
Q 011240 209 HHVSFMRPYGLFDVTAVT--LANTLTTFPYVDSISD-RLDFIGINYYGQEVVSGPGLKLVETDEYSESGRGVYPDGLFRV 285 (490)
Q Consensus 209 ~~~~~~~P~~~~D~~aa~--~~~~~~~~p~~~~i~~-~~DFiGiNyYt~~~v~~~~~~~~~~~~~s~~g~~i~P~gL~~~ 285 (490)
. |+.++.++.. +.|... .+. -+| +.|=+|++-= ++ .+|... +-.+..
T Consensus 193 -D------Y~ie~~~~kr~~~~nlI~---~Lk-ekG~pIDgiG~QsH----~~--------------~~~~~~-~~~~~a 242 (345)
T COG3693 193 -D------YSIEGNPAKRNYVLNLIE---ELK-EKGAPIDGIGIQSH----FS--------------GDGPSI-EKMRAA 242 (345)
T ss_pred -c------ccccCChHHHHHHHHHHH---HHH-HCCCCccceeeeee----ec--------------CCCCCH-HHHHHH
Confidence 1 1112222221 111110 010 134 4898988642 11 123322 223333
Q ss_pred HHHHHHHhCCCCCCEEEeecCCCCC-C--CcccHHHHHHHH---HHHHHHHHcCCCeeEEEEEecccccCCcCCCCCccc
Q 011240 286 LHQFHERYKHLNLPFIITENGVSDE-T--DLIRRPYVIEHL---LAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFG 359 (490)
Q Consensus 286 L~~i~~rY~~~~~PI~ITENG~~~~-~--D~~Ri~yl~~hL---~~v~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~rFG 359 (490)
+..+.+. ++||+|||--+.+. . +..| .|++..- .+-.......-.|.+.+.|.++|+++|..|..++++
T Consensus 243 ~~~~~k~----Gl~i~VTELD~~~~~P~~~~p~-~~~~~~~~~~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~~~~~ 317 (345)
T COG3693 243 LLKFSKL----GLPIYVTELDMSDYTPDSGAPR-LYLQKAASRAKAFLLLLLNPNQVKAITFWGITDRYSWLRGRDPRRD 317 (345)
T ss_pred HHHHhhc----CCCceEEEeeeeccCCCCccHH-HHHHHHHHHHHHHHHHHhcccccceEEEeeeccCcccccCCccCcC
Confidence 3333332 48999999998862 2 2222 2333221 111223345666999999999999999999888885
Q ss_pred ----eEEEcCCCCccccccchHHHHHHHHHc
Q 011240 360 ----LVAVDRANNLARIPRPSYHLFTKVVTT 386 (490)
Q Consensus 360 ----L~~VD~~~~~~R~pK~Sa~~y~~ii~~ 386 (490)
|. +|- + =+|||...+.+++..+
T Consensus 318 ~~rPl~-~D~--n--~~pKPa~~aI~e~la~ 343 (345)
T COG3693 318 GLRPLL-FDD--N--YQPKPAYKAIAEVLAP 343 (345)
T ss_pred CCCCcc-cCC--C--CCcchHHHHHHHHhcC
Confidence 22 242 2 2599999999877654
No 22
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.36 E-value=1.4e-05 Score=81.12 Aligned_cols=92 Identities=16% Similarity=0.198 Sum_probs=61.3
Q ss_pred ccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccC
Q 011240 29 WSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYG 108 (490)
Q Consensus 29 y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~G 108 (490)
.+.++.|+.+||++|+|++|++. .|.. .++++.|-+.||-++.-+..+..-.|- ..|
T Consensus 35 ~~~~~~d~~l~k~~G~N~iR~~h-----~p~~-----------------~~~~~~cD~~GilV~~e~~~~~~~~~~-~~~ 91 (298)
T PF02836_consen 35 DEAMERDLELMKEMGFNAIRTHH-----YPPS-----------------PRFYDLCDELGILVWQEIPLEGHGSWQ-DFG 91 (298)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETT-----S--S-----------------HHHHHHHHHHT-EEEEE-S-BSCTSSS-STS
T ss_pred HHHHHHHHHHHHhcCcceEEccc-----ccCc-----------------HHHHHHHhhcCCEEEEeccccccCccc-cCC
Confidence 46789999999999999999943 2321 246777888999988766442111111 111
Q ss_pred C----CCChhhHHHHHHHHHHHHHHhcCC--ccEEEEccCc
Q 011240 109 G----WKLEKTIDYFMDFTRLVVDSVSDI--VDYWVTFNEP 143 (490)
Q Consensus 109 G----w~n~~~v~~F~~YA~~~f~~fgd~--Vk~W~T~NEP 143 (490)
- -.+++..+.+.+=++.+++++... |-.|...||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 92 NCNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp CTSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 0 135778888888888888898875 8899999998
No 23
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.07 E-value=0.003 Score=63.45 Aligned_cols=242 Identities=22% Similarity=0.341 Sum_probs=136.9
Q ss_pred HHH-HHHHHhcCCCeEEeccccccccCCCC-CCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEcc---CCCCccccccc
Q 011240 33 DIE-LKLAKDTGVSVFRLGIDWSRIMPAEP-VNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF---HHSLPAWAGEY 107 (490)
Q Consensus 33 ~eD-i~lmk~lGv~~yRfSIsWsRI~P~~~-~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~---H~dlP~~l~~~ 107 (490)
++| ++.||+.|||..|+-| |- -|... -+|..|.-|. ++---.+-.+.+++||++++..| ||.-|..-...
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wn--dP~dsngn~yggGnnD--~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kP 139 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WN--DPYDSNGNGYGGGNND--LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKP 139 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ec--CCccCCCCccCCCcch--HHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCc
Confidence 444 6999999999999865 21 12110 0122122221 23334678889999999999987 45556554445
Q ss_pred CCCCC---hhhHHHHHHHHHHHHHHh---cCCccEEEEccCcchhccccccCCCCCCCCCChhhhhhcCCCchhHHHHHH
Q 011240 108 GGWKL---EKTIDYFMDFTRLVVDSV---SDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFNQAMH 181 (490)
Q Consensus 108 GGw~n---~~~v~~F~~YA~~~f~~f---gd~Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~~a~h 181 (490)
-.|++ ++.-...-+|.+.+...+ |-..+.-..=||-+- |+ .||-|... .+.. +-
T Consensus 140 kaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~----gf---lwp~Ge~~------------~f~k-~a 199 (403)
T COG3867 140 KAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNG----GF---LWPDGEGR------------NFDK-MA 199 (403)
T ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCC----ce---eccCCCCc------------ChHH-HH
Confidence 67876 333444455666555554 555666677788663 21 35654331 1222 12
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEeeccccCCCChhcHHHHHHHhhccCCcccccc---CCCcceEEeecCCCceee
Q 011240 182 WMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYGLFDVTAVTLANTLTTFPYVDSI---SDRLDFIGINYYGQEVVS 258 (490)
Q Consensus 182 ~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~~~D~~aa~~~~~~~~~p~~~~i---~~~~DFiGiNyYt~~~v~ 258 (490)
.|+ .++++++|+..| .|-+++|..--.-.+.... ++|.| .-.+|.||++||+--
T Consensus 200 ~L~---n~g~~avrev~p----~ikv~lHla~g~~n~~y~~-------------~fd~ltk~nvdfDVig~SyYpyW--- 256 (403)
T COG3867 200 ALL---NAGIRAVREVSP----TIKVALHLAEGENNSLYRW-------------IFDELTKRNVDFDVIGSSYYPYW--- 256 (403)
T ss_pred HHH---HHHhhhhhhcCC----CceEEEEecCCCCCchhhH-------------HHHHHHHcCCCceEEeeeccccc---
Confidence 355 356666677655 3444555532111111110 11222 346899999999631
Q ss_pred CCCCcccCCCCcccCCcccCchHHHHHHHHHHHHhCCCCCCEEEeecCCCC-CC--------------C-------cccH
Q 011240 259 GPGLKLVETDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSD-ET--------------D-------LIRR 316 (490)
Q Consensus 259 ~~~~~~~~~~~~s~~g~~i~P~gL~~~L~~i~~rY~~~~~PI~ITENG~~~-~~--------------D-------~~Ri 316 (490)
.---..|...|..+..||. +.++|.|.+-+- .+ + ....
T Consensus 257 -----------------hgtl~nL~~nl~dia~rY~---K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQa 316 (403)
T COG3867 257 -----------------HGTLNNLTTNLNDIASRYH---KDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQA 316 (403)
T ss_pred -----------------cCcHHHHHhHHHHHHHHhc---CeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechh
Confidence 1112357888999999996 789999998741 00 1 1234
Q ss_pred HHHHHHHHHHHHHHHcCCCeeEEEEEec
Q 011240 317 PYVIEHLLAVYAAMITGVPVIGYLFWTI 344 (490)
Q Consensus 317 ~yl~~hL~~v~~Ai~dGv~V~GY~~WSl 344 (490)
.++++-+++|... -+.+=.|.|+|--
T Consensus 317 t~vrDvie~V~nv--p~~~GlGvFYWEp 342 (403)
T COG3867 317 TFVRDVIEAVKNV--PKSNGLGVFYWEP 342 (403)
T ss_pred hHHHHHHHHHHhC--CCCCceEEEEecc
Confidence 4666655544321 3445579999953
No 24
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.86 E-value=2.8e-05 Score=86.51 Aligned_cols=116 Identities=22% Similarity=0.368 Sum_probs=88.7
Q ss_pred cChHHHHHHHHhcCCCeEEec-cccccccCCCCCCCCcCcCChHHHHHHHHH-HHHHHHCCCEEEEEc-cCCCCccccc-
Q 011240 30 SDPDIELKLAKDTGVSVFRLG-IDWSRIMPAEPVNGLKETVNFAALERYKWI-INRVRSYGMKVMLTL-FHHSLPAWAG- 105 (490)
Q Consensus 30 ~~~~eDi~lmk~lGv~~yRfS-IsWsRI~P~~~~~G~~g~vn~~gl~~Y~~l-Id~l~~~GI~PivTL-~H~dlP~~l~- 105 (490)
+.|++|+++||++|+|++|.| ++|++++|++ |.+|...+| .. ++.+.+.||..++.- --...|.|+.
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e------G~fdf~~~D---~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~ 100 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPEE------GKFDFTWLD---EIFLERAYKAGLYVILRTGPTGAPPAWLAK 100 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCccc------cccCcccch---HHHHHHHHhcCceEEEecCCCCCCchHHhc
Confidence 678999999999999999996 6999999996 899988554 44 999999999999876 5456667752
Q ss_pred ---------------ccCCCCChhhHH-HHHHHHHH----HHHH-hcCC--ccEEEEccCcch-hccccccCC
Q 011240 106 ---------------EYGGWKLEKTID-YFMDFTRL----VVDS-VSDI--VDYWVTFNEPHV-FCMLTYCAG 154 (490)
Q Consensus 106 ---------------~~GGw~n~~~v~-~F~~YA~~----~f~~-fgd~--Vk~W~T~NEP~~-~~~~gY~~G 154 (490)
..|+|.+-+.+. .+..|++. +.+| ||+. |--|.+-||-.. .|+..|+..
T Consensus 101 ~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~ 173 (673)
T COG1874 101 KYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQA 173 (673)
T ss_pred CChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHH
Confidence 248897654443 47777777 6677 7764 888999998665 444444433
No 25
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=97.58 E-value=0.0042 Score=73.38 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=61.5
Q ss_pred ccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEc----cCCCCcccc
Q 011240 29 WSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTL----FHHSLPAWA 104 (490)
Q Consensus 29 y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL----~H~dlP~~l 104 (490)
-+.+++|+++||++|+|++|+| ..|.. ..+.+.|=+.||-++--. +.|.....+
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~s-----HyP~~-----------------~~fydlcDe~GllV~dE~~~e~~g~~~~~~~ 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTA-----HYPND-----------------PRFYELCDIYGLFVMAETDVESHGFANVGDI 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCCC-----------------HHHHHHHHHCCCEEEECCcccccCccccccc
Confidence 4678999999999999999996 35542 146777888999877643 112111100
Q ss_pred cccCCC--CChhhHHHHHHHHHHHHHHhcCC--ccEEEEccCc
Q 011240 105 GEYGGW--KLEKTIDYFMDFTRLVVDSVSDI--VDYWVTFNEP 143 (490)
Q Consensus 105 ~~~GGw--~n~~~v~~F~~YA~~~f~~fgd~--Vk~W~T~NEP 143 (490)
.| .++...+.|.+=++.+++|.... |-.|..-||.
T Consensus 412 ----~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 412 ----SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred ----ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 11 23445567777788899999885 7789999995
No 26
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.40 E-value=0.0009 Score=71.24 Aligned_cols=110 Identities=16% Similarity=0.261 Sum_probs=81.4
Q ss_pred HHHHHHHHhcCCCeEEeccccccccCCCCCCCCc-CcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCccccccc----
Q 011240 33 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLK-ETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEY---- 107 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~-g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~---- 107 (490)
++|+..||+.|+|+.|.-|.|-.+.+.. |.. ...+...+.+-+++|+..++.||.+++.||+..-.+--.+.
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~---~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~ 152 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATD---GDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYT 152 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccC---CCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCccccc
Confidence 8999999999999999999855554421 011 22324445588899999999999999999997633332221
Q ss_pred CCCC-ChhhHHHHHHHHHHHHHHhcCC--ccEEEEccCcch
Q 011240 108 GGWK-LEKTIDYFMDFTRLVVDSVSDI--VDYWVTFNEPHV 145 (490)
Q Consensus 108 GGw~-n~~~v~~F~~YA~~~f~~fgd~--Vk~W~T~NEP~~ 145 (490)
+.+. ....++.+.+--+.++.+|++. |--..++|||+.
T Consensus 153 ~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 153 SDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred ccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2333 3567799999999999999884 555789999995
No 27
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.13 E-value=0.0033 Score=62.10 Aligned_cols=78 Identities=24% Similarity=0.419 Sum_probs=55.4
Q ss_pred CCcceEEeecCCCceeeCCCCcccCCCCcccCCcccCchHHHHHHHHHHHHhCCCCCCEEEeecCCCC----CCCcccHH
Q 011240 242 DRLDFIGINYYGQEVVSGPGLKLVETDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSD----ETDLIRRP 317 (490)
Q Consensus 242 ~~~DFiGiNyYt~~~v~~~~~~~~~~~~~s~~g~~i~P~gL~~~L~~i~~rY~~~~~PI~ITENG~~~----~~D~~Ri~ 317 (490)
..+||++||+|.. .+.++...|..++++|+ +||+|||.|+.+ .++.....
T Consensus 136 ~~~D~iavH~Y~~-----------------------~~~~~~~~i~~~~~~~~---kPIWITEf~~~~~~~~~~~~~~~~ 189 (239)
T PF11790_consen 136 CRVDFIAVHWYGG-----------------------DADDFKDYIDDLHNRYG---KPIWITEFGCWNGGSQGSDEQQAS 189 (239)
T ss_pred CCccEEEEecCCc-----------------------CHHHHHHHHHHHHHHhC---CCEEEEeecccCCCCCCCHHHHHH
Confidence 4799999999921 13468889999999996 899999999753 23444455
Q ss_pred HHHHHHHHHHHHHHcCCCeeEEEEEecccccC
Q 011240 318 YVIEHLLAVYAAMITGVPVIGYLFWTISDNWE 349 (490)
Q Consensus 318 yl~~hL~~v~~Ai~dGv~V~GY~~WSllDnfE 349 (490)
|+++.+ ..++.---|.+|++.++++...
T Consensus 190 fl~~~~----~~ld~~~~VeryawF~~~~~~~ 217 (239)
T PF11790_consen 190 FLRQAL----PWLDSQPYVERYAWFGFMNDGS 217 (239)
T ss_pred HHHHHH----HHHhcCCCeeEEEecccccccC
Confidence 555544 4445456789999998544433
No 28
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.09 E-value=0.038 Score=56.45 Aligned_cols=253 Identities=18% Similarity=0.263 Sum_probs=103.9
Q ss_pred ChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCCC
Q 011240 31 DPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGW 110 (490)
Q Consensus 31 ~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw 110 (490)
.++.|+.+||+||+|+.|.= -|-|. . +| +.-+..|-+.||-.++.|--. ...+....-|
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~---------~-----nH-d~CM~~~~~aGIYvi~Dl~~p--~~sI~r~~P~ 112 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPS---------K-----NH-DECMSAFADAGIYVILDLNTP--NGSINRSDPA 112 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TT---------S--------HHHHHHHHHTT-EEEEES-BT--TBS--TTS--
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCC---------C-----CH-HHHHHHHHhCCCEEEEecCCC--CccccCCCCc
Confidence 57899999999999999973 34443 1 23 778889999999999999533 1223221111
Q ss_pred CChhhHHHHHHHHHHH--HHHhcCCccEEEEccCcchhccccccCCCCCCCCCChhhhhhcCCCchhHHHHHHHHHHHHH
Q 011240 111 KLEKTIDYFMDFTRLV--VDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFNQAMHWMAIAHS 188 (490)
Q Consensus 111 ~n~~~v~~F~~YA~~~--f~~fgd~Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~~a~h~ll~AHa 188 (490)
. .=....|.+|...+ |..|- .|--+..=||-..-. .+. .... .++|-+
T Consensus 113 ~-sw~~~l~~~~~~vid~fa~Y~-N~LgFf~GNEVin~~-------------~~t--------~aap-------~vKAav 162 (314)
T PF03198_consen 113 P-SWNTDLLDRYFAVIDAFAKYD-NTLGFFAGNEVINDA-------------SNT--------NAAP-------YVKAAV 162 (314)
T ss_dssp -----HHHHHHHHHHHHHHTT-T-TEEEEEEEESSS-ST-------------T-G--------GGHH-------HHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHhccCC-ceEEEEecceeecCC-------------CCc--------ccHH-------HHHHHH
Confidence 1 11346677776654 34442 355555556632110 000 0011 245555
Q ss_pred HHHHHHHhhcCCCCCcEEEEeeccccCCCChhcHHHHHHHhhccCCccccccCCCcceEEeecCCCceeeCCCCcccCCC
Q 011240 189 KAYDYIHAKSTSTKSKVGVAHHVSFMRPYGLFDVTAVTLANTLTTFPYVDSISDRLDFIGINYYGQEVVSGPGLKLVETD 268 (490)
Q Consensus 189 ~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~~~D~~aa~~~~~~~~~p~~~~i~~~~DFiGiNyYt~~~v~~~~~~~~~~~ 268 (490)
+-++.|.+.+..-.--||.+-... .+. ....++.+. +..-..+.||+|+|-|. ++. ..
T Consensus 163 RD~K~Yi~~~~~R~IPVGYsaaD~-------~~~-r~~~a~Yl~----Cg~~~~~iDf~g~N~Y~---WCg-------~S 220 (314)
T PF03198_consen 163 RDMKAYIKSKGYRSIPVGYSAADD-------AEI-RQDLANYLN----CGDDDERIDFFGLNSYE---WCG-------DS 220 (314)
T ss_dssp HHHHHHHHHSSS----EEEEE----------TTT-HHHHHHHTT----BTT-----S-EEEEE-------S-------S-
T ss_pred HHHHHHHHhcCCCCCceeEEccCC-------hhH-HHHHHHHhc----CCCcccccceeeeccce---ecC-------CC
Confidence 666665543321112355432111 000 011112211 11112478999999995 221 11
Q ss_pred CcccCCcccCchHHHHHHHHHHHHhCCCCCCEEEeecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCeeEEEEEeccccc
Q 011240 269 EYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNW 348 (490)
Q Consensus 269 ~~s~~g~~i~P~gL~~~L~~i~~rY~~~~~PI~ITENG~~~~~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSllDnf 348 (490)
.++.+ |..+++..+ +.| ..||+.+|.|+-+.. .|. | .+ +.++..---.+| ||=-=-|
T Consensus 221 tf~~S-------Gy~~l~~~f-~~y---~vPvffSEyGCn~~~--pR~-f-~e-v~aly~~~Mt~v-------~SGGivY 277 (314)
T PF03198_consen 221 TFETS-------GYDRLTKEF-SNY---SVPVFFSEYGCNTVT--PRT-F-TE-VPALYSPEMTDV-------WSGGIVY 277 (314)
T ss_dssp -HHHH-------SHHHHHHHH-TT----SS-EEEEEE---SSS--S-----TH-HHHHTSHHHHTT-------EEEEEES
T ss_pred ccccc-------cHHHHHHHh-hCC---CCCeEEcccCCCCCC--Ccc-c-hH-hHHhhCccchhh-------eeceEEE
Confidence 12222 344454444 345 489999999996432 232 1 11 111211111233 3332336
Q ss_pred CCcCCCCCccceEEEcCCCCccccccchHHHHHH
Q 011240 349 EWADGYGPKFGLVAVDRANNLARIPRPSYHLFTK 382 (490)
Q Consensus 349 EW~~Gy~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ 382 (490)
||.. -...|||+.++.+.. .++.+=+.-+++
T Consensus 278 Ey~~-e~n~yGlV~~~~~~~--~~~~~Df~~L~~ 308 (314)
T PF03198_consen 278 EYFQ-EANNYGLVEISGDGS--VTTLDDFDNLKS 308 (314)
T ss_dssp -SB---SSS--SEEE-TTS---EEE-THHHHHHH
T ss_pred EEec-cCCceEEEEEcCCCC--eeecHhHHHHHH
Confidence 7765 356899999997532 234444444444
No 29
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=97.04 E-value=0.17 Score=53.32 Aligned_cols=105 Identities=25% Similarity=0.389 Sum_probs=57.4
Q ss_pred HhcCCCeEEecc---ccc-----cccCCC----CCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCccccccc
Q 011240 40 KDTGVSVFRLGI---DWS-----RIMPAE----PVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEY 107 (490)
Q Consensus 40 k~lGv~~yRfSI---sWs-----RI~P~~----~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~ 107 (490)
+.+|++.+||.| ++. .|.+.- .....+|.+|+.+=+--+.+++.++++|+.-++ +|-+.-|.|+...
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~N 135 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKN 135 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcC
Confidence 459999999988 332 122110 001124677776555567899999999999765 7788888887543
Q ss_pred C----C-----CCChhhHHHHHHHHHHHHHHh---cCCccEEEEccCcch
Q 011240 108 G----G-----WKLEKTIDYFMDFTRLVVDSV---SDIVDYWVTFNEPHV 145 (490)
Q Consensus 108 G----G-----w~n~~~v~~F~~YA~~~f~~f---gd~Vk~W~T~NEP~~ 145 (490)
| + =+.++..+.|++|-..|+++| |=.|++-.+||||..
T Consensus 136 G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 136 GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 3 1 245778899999998888888 446999999999983
No 30
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=96.99 E-value=0.03 Score=66.30 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=61.2
Q ss_pred ccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEcc---CCCCccccc
Q 011240 29 WSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF---HHSLPAWAG 105 (490)
Q Consensus 29 y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~---H~dlP~~l~ 105 (490)
-+.+++||++||++|+|++|+| ..|.. ..+.+.|=+.||-+|--.. |.-.|...
T Consensus 370 ~e~~~~di~lmK~~g~NaVR~s-----HyP~~-----------------p~fydlcDe~GilV~dE~~~e~hg~~~~~~- 426 (1027)
T PRK09525 370 EETMVQDILLMKQHNFNAVRCS-----HYPNH-----------------PLWYELCDRYGLYVVDEANIETHGMVPMNR- 426 (1027)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCCC-----------------HHHHHHHHHcCCEEEEecCccccCCccccC-
Confidence 3567899999999999999996 34532 1355677788998876542 21112100
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHhcCC--ccEEEEccCc
Q 011240 106 EYGGWKLEKTIDYFMDFTRLVVDSVSDI--VDYWVTFNEP 143 (490)
Q Consensus 106 ~~GGw~n~~~v~~F~~YA~~~f~~fgd~--Vk~W~T~NEP 143 (490)
...+++..+.+.+=++.+++|.... |-.|...||+
T Consensus 427 ---~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~ 463 (1027)
T PRK09525 427 ---LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNES 463 (1027)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCC
Confidence 0124566677777788888998886 7899999996
No 31
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=96.83 E-value=0.0021 Score=66.25 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=62.4
Q ss_pred cChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccC-----C---CCc
Q 011240 30 SDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFH-----H---SLP 101 (490)
Q Consensus 30 ~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H-----~---dlP 101 (490)
..|++-++.||++|+|++-+-|.|.-.+|.+ |.+|++|..=-+.+|+.+.++|+.+++-.== | .+|
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~------g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P 97 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLHEPEE------GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLP 97 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHHSSBT------TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--
T ss_pred hHHHHHHHHHHhCCcceEEEeccccccCCCC------CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhh
Confidence 3578999999999999999999999999986 8899998766678999999999998774321 2 489
Q ss_pred cccccc-CCCC---ChhhHHHHHHHHHHHHHHhc
Q 011240 102 AWAGEY-GGWK---LEKTIDYFMDFTRLVVDSVS 131 (490)
Q Consensus 102 ~~l~~~-GGw~---n~~~v~~F~~YA~~~f~~fg 131 (490)
.||... +... ++.+.+.-.+|.+.+++...
T Consensus 98 ~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~ 131 (319)
T PF01301_consen 98 AWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK 131 (319)
T ss_dssp GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG
T ss_pred hhhhccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 999655 3322 24444555555555555543
No 32
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=96.46 E-value=0.02 Score=61.07 Aligned_cols=270 Identities=20% Similarity=0.165 Sum_probs=157.4
Q ss_pred HHHHHHHHhcCCCeEEecccc-ccccCCCCCCCCcCcCChHH-HHHHHHHHHHHHHCCCEEEEEcc----CCCCcccccc
Q 011240 33 DIELKLAKDTGVSVFRLGIDW-SRIMPAEPVNGLKETVNFAA-LERYKWIINRVRSYGMKVMLTLF----HHSLPAWAGE 106 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSIsW-sRI~P~~~~~G~~g~vn~~g-l~~Y~~lId~l~~~GI~PivTL~----H~dlP~~l~~ 106 (490)
+.|++.++.+|++..|.+|-= .- .-+. .|..|.+. +.+-..+++.+...+|+.++||. |+.-=.|--.
T Consensus 29 ~~dle~a~~vg~k~lR~fiLDgEd-c~d~-----~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ip 102 (587)
T COG3934 29 KADLEPAGFVGVKDLRLFILDGED-CRDK-----EGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIP 102 (587)
T ss_pred hcccccccCccceeEEEEEecCcc-hhhh-----hceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEee
Confidence 578999999999999998422 11 1111 25667666 88889999999999999999987 4332222211
Q ss_pred -cCC------CCChhhHHHHHHHHHHHHHHhcCC--ccEEEEccCcchhccccccCCCCCCCCCChhhhhhcCCCchhHH
Q 011240 107 -YGG------WKLEKTIDYFMDFTRLVVDSVSDI--VDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFN 177 (490)
Q Consensus 107 -~GG------w~n~~~v~~F~~YA~~~f~~fgd~--Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~ 177 (490)
.|| -..+.+..-|.+|.+.+++.|+.. +--|.-=|||.+-+ |.
T Consensus 103 wag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~----------p~------------------ 154 (587)
T COG3934 103 WAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEA----------PI------------------ 154 (587)
T ss_pred cCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccc----------cC------------------
Confidence 122 223567778999999999988875 45688888876522 10
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeeccccCCCChhcHHHHHHHhhccCCccccccCCCcceEEeecCCCcee
Q 011240 178 QAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYGLFDVTAVTLANTLTTFPYVDSISDRLDFIGINYYGQEVV 257 (490)
Q Consensus 178 ~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~~~D~~aa~~~~~~~~~p~~~~i~~~~DFiGiNyYt~~~v 257 (490)
...+++.--..-+.+++...+.. .|.. .....|+. ..-|+ .+++..||-+.+-|.- +.
T Consensus 155 -s~N~f~~w~~emy~yiK~ldd~h--lvsv---GD~~sp~~-------------~~~py--N~r~~vDya~~hLY~h-yd 212 (587)
T COG3934 155 -SVNNFWDWSGEMYAYIKWLDDGH--LVSV---GDPASPWP-------------QYAPY--NARFYVDYAANHLYRH-YD 212 (587)
T ss_pred -ChhHHHHHHHHHHHHhhccCCCC--eeec---CCcCCccc-------------ccCCc--ccceeeccccchhhhh-cc
Confidence 01122333345566777776522 2221 11111111 01111 3566789999888852 11
Q ss_pred eCCCCcccCCCCcccCCcccCchHHHHHHHHHHHHhCCCCCCEEEeecCCCCCCCccc--HHHHHHHHHHHHHHHHcCCC
Q 011240 258 SGPGLKLVETDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDETDLIR--RPYVIEHLLAVYAAMITGVP 335 (490)
Q Consensus 258 ~~~~~~~~~~~~~s~~g~~i~P~gL~~~L~~i~~rY~~~~~PI~ITENG~~~~~D~~R--i~yl~~hL~~v~~Ai~dGv~ 335 (490)
.. +++..+ .+|=+.+ +.+...-+ -.|++.-|.|+++.--..+ +.++-.-| |+.-|.
T Consensus 213 ~s---------l~~r~s-~~yg~~~----l~i~~~~g--~~pV~leefGfsta~g~e~s~ayfiw~~l-----al~~gg- 270 (587)
T COG3934 213 TS---------LVSRVS-TVYGKPY----LDIPTIMG--WQPVNLEEFGFSTAFGQENSPAYFIWIRL-----ALDTGG- 270 (587)
T ss_pred CC---------hhheee-eeecchh----hccchhcc--cceeeccccCCcccccccccchhhhhhhh-----HHhhcC-
Confidence 11 011111 1111111 11222222 2799999999997532222 22222222 555555
Q ss_pred eeEEEEEecccccCCcCC-------CCCccceEEEcCCCCccccccchHHHHHHHHHcC
Q 011240 336 VIGYLFWTISDNWEWADG-------YGPKFGLVAVDRANNLARIPRPSYHLFTKVVTTG 387 (490)
Q Consensus 336 V~GY~~WSllDnfEW~~G-------y~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~~~ 387 (490)
.|-++|.|.|--+=.++ ....||++.-|- .+|-++.-|.++..+.
T Consensus 271 -dGaLiwclsdf~~gsdd~ey~w~p~el~fgiIradg------pek~~a~~~~~fsn~~ 322 (587)
T COG3934 271 -DGALIWCLSDFHLGSDDSEYTWGPMELEFGIIRADG------PEKIDAMTLHIFSNNW 322 (587)
T ss_pred -CceEEEEecCCccCCCCCCCccccccceeeeecCCC------chhhhHHHHHHhcccc
Confidence 57899999988743333 345799997775 3789999998887653
No 33
>PLN00197 beta-amylase; Provisional
Probab=96.03 E-value=0.044 Score=59.54 Aligned_cols=105 Identities=22% Similarity=0.387 Sum_probs=80.1
Q ss_pred ChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEcc-C-----------C
Q 011240 31 DPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF-H-----------H 98 (490)
Q Consensus 31 ~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~-H-----------~ 98 (490)
..+..++.||.+||+.+-..+=|--+++++| +.+|++ .|++|++.+++.|++..+.|- | -
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p-----~~YdWs---gY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~I 199 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERESP-----GVYNWG---GYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTI 199 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCC-----CcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 3688999999999999999999999999874 789976 589999999999998766553 4 2
Q ss_pred CCccccc------------ccCCCCCh----------------hhHHHHHHHHHHHHHHhcCCccEEEEccCcch
Q 011240 99 SLPAWAG------------EYGGWKLE----------------KTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHV 145 (490)
Q Consensus 99 dlP~~l~------------~~GGw~n~----------------~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~ 145 (490)
-||+|+. +..|-.|. .-++.+.+|-+-.-++|.+... -||.|..+
T Consensus 200 pLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 200 PLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred cCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 5899963 22333332 2267888888888788877654 36777654
No 34
>PLN03059 beta-galactosidase; Provisional
Probab=96.03 E-value=0.038 Score=63.22 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=73.6
Q ss_pred cChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEcc--------CCCCc
Q 011240 30 SDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF--------HHSLP 101 (490)
Q Consensus 30 ~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~--------H~dlP 101 (490)
+.|++=++.||++|+|+.-.=|.|.-.+|.+ |.+|++|..=-.++|+.+.+.|+-+++-.= .-.+|
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~------G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP 132 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP------GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFP 132 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC------CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCc
Confidence 4678889999999999999999999999985 899999987778899999999999888543 33789
Q ss_pred ccccccCCCC----ChhhHHHHHHHHHHHHHHh
Q 011240 102 AWAGEYGGWK----LEKTIDYFMDFTRLVVDSV 130 (490)
Q Consensus 102 ~~l~~~GGw~----n~~~v~~F~~YA~~~f~~f 130 (490)
.||....|-. ++.+.++-.+|-+.+++.+
T Consensus 133 ~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l 165 (840)
T PLN03059 133 VWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMM 165 (840)
T ss_pred hhhhcCCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 9986544433 3444555555555555555
No 35
>PLN02161 beta-amylase
Probab=95.56 E-value=0.029 Score=60.42 Aligned_cols=111 Identities=18% Similarity=0.359 Sum_probs=84.1
Q ss_pred ccccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEcc-CC-----
Q 011240 25 RLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF-HH----- 98 (490)
Q Consensus 25 ~~~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~-H~----- 98 (490)
....+...+..++.||.+||+.+-..+=|--++.++| +.+|++ .|+++++.+++.|++..+.|- |=
T Consensus 112 ~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p-----~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNv 183 (531)
T PLN02161 112 KIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSP-----LEFKWS---LYEELFRLISEAGLKLHVALCFHSNMHLF 183 (531)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCC-----CcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCC
Confidence 3567777888999999999999999999999999874 789976 589999999999998666553 42
Q ss_pred ------CCccccc------------ccCCCCCh----------------hhHHHHHHHHHHHHHHhcCCccEEEEccCcc
Q 011240 99 ------SLPAWAG------------EYGGWKLE----------------KTIDYFMDFTRLVVDSVSDIVDYWVTFNEPH 144 (490)
Q Consensus 99 ------dlP~~l~------------~~GGw~n~----------------~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~ 144 (490)
-||+|+. +.-|-.|+ .-++.+.+|-+-.-++|.+... -||.|..
T Consensus 184 Gd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~ 261 (531)
T PLN02161 184 GGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEIS 261 (531)
T ss_pred CCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEE
Confidence 4899963 22333332 2347888888888788877654 4777765
Q ss_pred h
Q 011240 145 V 145 (490)
Q Consensus 145 ~ 145 (490)
+
T Consensus 262 V 262 (531)
T PLN02161 262 I 262 (531)
T ss_pred e
Confidence 4
No 36
>PLN02803 beta-amylase
Probab=95.46 E-value=0.035 Score=60.07 Aligned_cols=104 Identities=20% Similarity=0.366 Sum_probs=78.9
Q ss_pred hHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEcc-C-----------CC
Q 011240 32 PDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF-H-----------HS 99 (490)
Q Consensus 32 ~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~-H-----------~d 99 (490)
.+..++.||.+||+.+-..+=|--++.++| +.+|+. .|++|++.+++.|++..+.|- | --
T Consensus 109 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p-----~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~Ip 180 (548)
T PLN02803 109 MNASLMALRSAGVEGVMVDAWWGLVEKDGP-----MKYNWE---GYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIP 180 (548)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeeeeccCCC-----CcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 567999999999999999999999999874 789976 589999999999998666553 3 24
Q ss_pred Cccccc------------ccCCCCCh----------------hhHHHHHHHHHHHHHHhcCCccEEEEccCcch
Q 011240 100 LPAWAG------------EYGGWKLE----------------KTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHV 145 (490)
Q Consensus 100 lP~~l~------------~~GGw~n~----------------~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~ 145 (490)
||+|+. +.-|-.|. .-++.+.+|-+-.-++|.+... -||.|..+
T Consensus 181 LP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred CCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 899963 12232232 2347788888887788877654 57777654
No 37
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=94.96 E-value=0.016 Score=61.07 Aligned_cols=106 Identities=26% Similarity=0.527 Sum_probs=78.4
Q ss_pred ccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEc-cC----------
Q 011240 29 WSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTL-FH---------- 97 (490)
Q Consensus 29 y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL-~H---------- 97 (490)
++-.+..++.||++||+..-..+-|.-+++++| +.+|++ .|+++.+.+++.|++..+.| +|
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p-----~~ydWs---~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~ 86 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGP-----QQYDWS---GYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDC 86 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSST-----TB---H---HHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSS
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCC-----CccCcH---HHHHHHHHHHHcCCeEEEEEeeecCCCCCCCcc
Confidence 447789999999999999999999999999864 789976 58999999999999877765 34
Q ss_pred -CCCccccc-----------c-cCC--------CCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcch
Q 011240 98 -HSLPAWAG-----------E-YGG--------WKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHV 145 (490)
Q Consensus 98 -~dlP~~l~-----------~-~GG--------w~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~ 145 (490)
.-||.|+. + .|. |....+++.+.+|-+-..++|.+.. -||-|..+
T Consensus 87 ~IpLP~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~v 152 (402)
T PF01373_consen 87 NIPLPSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQV 152 (402)
T ss_dssp EB-S-HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEEE
T ss_pred CCcCCHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEEe
Confidence 35899973 1 232 5555569999999999999998764 56666543
No 38
>PLN02905 beta-amylase
Probab=94.71 E-value=0.095 Score=57.71 Aligned_cols=112 Identities=18% Similarity=0.332 Sum_probs=81.2
Q ss_pred ccccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEcc-C------
Q 011240 25 RLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF-H------ 97 (490)
Q Consensus 25 ~~~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~-H------ 97 (490)
....+...+..+..||.+||+.+-.-+=|--++.++| +.+||+ .|++|++.+++.|++..+.|- |
T Consensus 281 ~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP-----~~YdWs---gY~~L~~mvr~~GLKlqvVMSFHqCGGNV 352 (702)
T PLN02905 281 ELADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAP-----QEYNWN---GYKRLFQMVRELKLKLQVVMSFHECGGNV 352 (702)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCC-----CcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCC
Confidence 3456667788999999999999999999999999874 789976 589999999999998666553 4
Q ss_pred -----CCCccccc------------ccCCCCC----------------hhhHHHHHHHHHHHHHHhcCCccEEEEccCcc
Q 011240 98 -----HSLPAWAG------------EYGGWKL----------------EKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPH 144 (490)
Q Consensus 98 -----~dlP~~l~------------~~GGw~n----------------~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~ 144 (490)
--||+|+. +.-|-.| +.-++.+.+|-+-.-++|.+...- -||.|..
T Consensus 353 GD~~~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~ 431 (702)
T PLN02905 353 GDDVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFED-GVISMVE 431 (702)
T ss_pred CCcccccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcC-CceEEEE
Confidence 25899963 1233333 234477788877777777664211 2555654
Q ss_pred h
Q 011240 145 V 145 (490)
Q Consensus 145 ~ 145 (490)
+
T Consensus 432 V 432 (702)
T PLN02905 432 V 432 (702)
T ss_pred e
Confidence 3
No 39
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=94.40 E-value=0.22 Score=50.75 Aligned_cols=107 Identities=18% Similarity=0.266 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCCCeEEecc--ccccc-----cCCCCCCC------CcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCC
Q 011240 33 DIELKLAKDTGVSVFRLGI--DWSRI-----MPAEPVNG------LKETVNFAALERYKWIINRVRSYGMKVMLTLFHHS 99 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSI--sWsRI-----~P~~~~~G------~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~d 99 (490)
+.=++..|+-|+|..|+.+ .|-.. .|..+..+ .-..+|++=.++-+++|+.|.+.||.|.+-++| +
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g 111 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-G 111 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--H
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-C
Confidence 4447888999999999997 44433 22222111 112489999999999999999999999987776 2
Q ss_pred CcccccccCCCC---ChhhHHHHHHHHHHHHHHhcCC-ccEEEEccCc
Q 011240 100 LPAWAGEYGGWK---LEKTIDYFMDFTRLVVDSVSDI-VDYWVTFNEP 143 (490)
Q Consensus 100 lP~~l~~~GGw~---n~~~v~~F~~YA~~~f~~fgd~-Vk~W~T~NEP 143 (490)
.|- ..|.|- +.-..+.-.+|.+.|++||+.. =..|+.=||-
T Consensus 112 ~~~---~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 112 CPY---VPGTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHH---H-------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred Ccc---ccccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 221 124443 2334677888999999999997 3678888875
No 40
>PLN02801 beta-amylase
Probab=94.26 E-value=0.19 Score=54.32 Aligned_cols=106 Identities=18% Similarity=0.436 Sum_probs=78.5
Q ss_pred ChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEcc-C-----------C
Q 011240 31 DPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF-H-----------H 98 (490)
Q Consensus 31 ~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~-H-----------~ 98 (490)
..+..++.||.+||+..-..+=|--++.++| +.+|++ .|+++++.+++.|++..+.|- | .
T Consensus 38 ~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P-----~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~I 109 (517)
T PLN02801 38 GLEKQLKRLKEAGVDGVMVDVWWGIVESKGP-----KQYDWS---AYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNI 109 (517)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCC-----CccCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 4678999999999999999999999999864 789976 589999999999997665543 3 3
Q ss_pred CCccccc------------ccCCCCC----------------hhhHHHHHHHHHHHHHHhcCCccEEEEccCcch
Q 011240 99 SLPAWAG------------EYGGWKL----------------EKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHV 145 (490)
Q Consensus 99 dlP~~l~------------~~GGw~n----------------~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~ 145 (490)
-||+|+. +.-|-.| +.-++.+.+|-+-.-++|.+...- -||.|..+
T Consensus 110 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~-~~I~eI~V 183 (517)
T PLN02801 110 PIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFLEA-GVIIDIEV 183 (517)
T ss_pred cCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CeeEEEEE
Confidence 5899963 1223222 234688888888888888774311 25666544
No 41
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=93.66 E-value=1.5 Score=46.48 Aligned_cols=263 Identities=18% Similarity=0.198 Sum_probs=144.3
Q ss_pred HHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEE-EccCCCCcccccc-cCCC-CC-hh
Q 011240 39 AKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVML-TLFHHSLPAWAGE-YGGW-KL-EK 114 (490)
Q Consensus 39 mk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~Piv-TL~H~dlP~~l~~-~GGw-~n-~~ 114 (490)
-+|+|++..|+--=|.=++-.. -++ ..++++++|.+.+.| .|+| +-+||+.+.-... +.+= .. ..
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~~-------~~~---~t~~d~i~d~~~~~~-~~~ie~~l~~~~l~~~~~~wq~n~~~~~~ 82 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQKL-------FYP---FTYIDEIIDTLLDLG-LDLIELFLIWNNLNTKEHQWQLNVDDPKS 82 (428)
T ss_pred hhhhceeeehhcceeeeeeccc-------cCC---hHHHHHHHHHHHHhc-cHHHHHhhcccchhhhhhhcccccCCcHh
Confidence 4689999998888887322221 233 358899999999999 5555 6678887765432 2221 12 24
Q ss_pred hHHHHHHHHHHHHHHhcCC---ccEEEEccCcchhccccccCCCCCCCCCChhhhhhcCCCchhHHHHHHHHHHHHHHHH
Q 011240 115 TIDYFMDFTRLVVDSVSDI---VDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFNQAMHWMAIAHSKAY 191 (490)
Q Consensus 115 ~v~~F~~YA~~~f~~fgd~---Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~~a~h~ll~AHa~A~ 191 (490)
..+.++.++..|+.++|-+ +-.....||||..+- .. +.+ . +.+..||
T Consensus 83 ~~dl~~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ad--------------~~---------eyf-k--~y~~~a~---- 132 (428)
T COG3664 83 VFDLIAAFLKHVIRRVGVEFVRKWPFYSPNEPNLLAD--------------KQ---------EYF-K--LYDATAR---- 132 (428)
T ss_pred HHHHHHHHHHHHHHHhChhheeecceeecCCCCcccc--------------hH---------HHH-H--HHHhhhh----
Confidence 7899999999999999964 345678899986521 10 112 1 2233333
Q ss_pred HHHHhhcCCCCCcEEEEeeccccCCCChhcHHHHHHHhhccCCccccccCCCcceEEeecCCCceeeCCCCcccCCCCcc
Q 011240 192 DYIHAKSTSTKSKVGVAHHVSFMRPYGLFDVTAVTLANTLTTFPYVDSISDRLDFIGINYYGQEVVSGPGLKLVETDEYS 271 (490)
Q Consensus 192 ~~ir~~~~~~~~~VGi~~~~~~~~P~~~~D~~aa~~~~~~~~~p~~~~i~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~s 271 (490)
+..+ .-+||- +|..+ .. .++.+ .....||+-.+-|+..-+..... ......
T Consensus 133 ----~~~p--~i~vg~----~w~~e----~l-----------~~~~k-~~d~idfvt~~a~~~~av~~~~~---~~~~~~ 183 (428)
T COG3664 133 ----QRAP--SIQVGG----SWNTE----RL-----------HEFLK-KADEIDFVTELANSVDAVDFSTP---GAEEVK 183 (428)
T ss_pred ----ccCc--ceeecc----ccCcH----HH-----------hhhhh-ccCcccceeecccccccccccCC---Cchhhh
Confidence 1111 122332 12110 00 01112 35678999999988654321100 000111
Q ss_pred cCCc-ccCchHHHHHHHHHHHHhCCCCCCEEEeecCCCCC-----C-CcccHHHHHHHHHHHHHHHHcCCCeeEEEEEec
Q 011240 272 ESGR-GVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDE-----T-DLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTI 344 (490)
Q Consensus 272 ~~g~-~i~P~gL~~~L~~i~~rY~~~~~PI~ITENG~~~~-----~-D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSl 344 (490)
-++. .+.++ -+-++..-+.++- ++|.++||=-.... + +-.|..|+.+.| ++.|.+|.+..+|..
T Consensus 184 l~~~~~~l~~--~r~~~d~i~~~~~-~~pl~~~~wntlt~~~~~~n~sy~raa~i~~~L------r~~g~~v~a~~yW~~ 254 (428)
T COG3664 184 LSELKRTLED--LRGLKDLIQHHSL-GLPLLLTNWNTLTGPREPTNGSYVRAAYIMRLL------REAGSPVDAFGYWTN 254 (428)
T ss_pred hhhhhhhhhH--HHHHHHHHHhccC-CCcceeecccccCCCccccCceeehHHHHHHHH------HhcCChhhhhhhhhc
Confidence 1111 11221 1222333334543 57999999765542 2 233555554333 467999999999999
Q ss_pred ccccCCcC----CCCCccceEEEcCCCCccccccchHHHHHHH
Q 011240 345 SDNWEWAD----GYGPKFGLVAVDRANNLARIPRPSYHLFTKV 383 (490)
Q Consensus 345 lDnfEW~~----Gy~~rFGL~~VD~~~~~~R~pK~Sa~~y~~i 383 (490)
.|-+|=.. ++-.-|||++ ++. .+|-.=-++..|.++
T Consensus 255 sdl~e~~g~~~~~~~~gfel~~-~~~--~rrpa~~~~l~~n~L 294 (428)
T COG3664 255 SDLHEEHGPPEAPFVGGFELFA-PYG--GRRPAWMAALFFNRL 294 (428)
T ss_pred ccccccCCCcccccccceeeec-ccc--cchhHHHHHHHHHHH
Confidence 99997542 3556788885 332 233222334455555
No 42
>PLN02705 beta-amylase
Probab=93.27 E-value=0.27 Score=54.17 Aligned_cols=107 Identities=21% Similarity=0.337 Sum_probs=77.3
Q ss_pred cChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEcc-C-----------
Q 011240 30 SDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF-H----------- 97 (490)
Q Consensus 30 ~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~-H----------- 97 (490)
...+..++.||.+||+.+-..+=|-.++.++| +.+||+ .|++|++.+++.|++..+.|- |
T Consensus 268 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P-----~~YdWs---gY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~ 339 (681)
T PLN02705 268 EGVRQELSHMKSLNVDGVVVDCWWGIVEGWNP-----QKYVWS---GYRELFNIIREFKLKLQVVMAFHEYGGNASGNVM 339 (681)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeEeecCCC-----CcCCcH---HHHHHHHHHHHcCCeEEEEEEeeccCCCCCCccc
Confidence 44688899999999999999999999999864 789976 589999999999998666553 4
Q ss_pred CCCcccccc------------cCCCCCh----------------hhHHHHHHHHHHHHHHhcCCccEEEEccCcch
Q 011240 98 HSLPAWAGE------------YGGWKLE----------------KTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHV 145 (490)
Q Consensus 98 ~dlP~~l~~------------~GGw~n~----------------~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~ 145 (490)
--||+|+.+ .-|-.|. .-++.+.+|.+-.-++|.+...- -||.|..+
T Consensus 340 IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~V 414 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVE-GLITAVEI 414 (681)
T ss_pred ccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CceeEEEe
Confidence 258999632 2232222 23477788887777777664210 25566543
No 43
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=90.32 E-value=17 Score=39.95 Aligned_cols=113 Identities=18% Similarity=0.292 Sum_probs=64.1
Q ss_pred CCCcceEEeecCCCceeeCCCCcccCCCCcccCCcccCchHHHHHHHHHHHHhCCCCCCEEEeecCCCCCC-C----ccc
Q 011240 241 SDRLDFIGINYYGQEVVSGPGLKLVETDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDET-D----LIR 315 (490)
Q Consensus 241 ~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~s~~g~~i~P~gL~~~L~~i~~rY~~~~~PI~ITENG~~~~~-D----~~R 315 (490)
...+|-+|+|.|... .. ...|..++++|+ ++.|+-||...+... | ...
T Consensus 300 ~~yv~GiA~HwY~g~---------------------~~----~~~l~~~h~~~P--~k~l~~TE~~~g~~~~~~~~~~g~ 352 (496)
T PF02055_consen 300 AKYVDGIAFHWYGGD---------------------PS----PQALDQVHNKFP--DKFLLFTEACCGSWNWDTSVDLGS 352 (496)
T ss_dssp HTTEEEEEEEETTCS----------------------H----CHHHHHHHHHST--TSEEEEEEEESS-STTS-SS-TTH
T ss_pred HhheeEEEEECCCCC---------------------ch----hhHHHHHHHHCC--CcEEEeeccccCCCCccccccccc
Confidence 346799999999621 11 135677899998 588999998665421 2 111
Q ss_pred HHHHHHHHHHHHHHHHcCCCeeEEEEEecc-cc---cCCcCCCCCccceEEEcCCCCccccccchHHHHHHHHH
Q 011240 316 RPYVIEHLLAVYAAMITGVPVIGYLFWTIS-DN---WEWADGYGPKFGLVAVDRANNLARIPRPSYHLFTKVVT 385 (490)
Q Consensus 316 i~yl~~hL~~v~~Ai~dGv~V~GY~~WSll-Dn---fEW~~Gy~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~ 385 (490)
-.--..+...+...+..|+ .|++.|.|+ |. .-|..++... .+.||.++ .+-+..|.++.++++.+
T Consensus 353 w~~~~~y~~~ii~~lnn~~--~gw~~WNl~LD~~GGP~~~~n~~d~--~iivd~~~-~~~~~~p~yY~~gHfSK 421 (496)
T PF02055_consen 353 WDRAERYAHDIIGDLNNWV--SGWIDWNLALDENGGPNWVGNFCDA--PIIVDSDT-GEFYKQPEYYAMGHFSK 421 (496)
T ss_dssp HHHHHHHHHHHHHHHHTTE--EEEEEEESEBETTS---TT---B----SEEEEGGG-TEEEE-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhc--eeeeeeeeecCCCCCCcccCCCCCc--eeEEEcCC-CeEEEcHHHHHHHHHhc
Confidence 1111234445566677775 899999984 42 3354444333 34467643 34455677877777654
No 44
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=88.62 E-value=3.4 Score=38.65 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=63.3
Q ss_pred ChHHHHHHHHhcCCCeEEeccccccccCCC--CCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccC
Q 011240 31 DPDIELKLAKDTGVSVFRLGIDWSRIMPAE--PVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYG 108 (490)
Q Consensus 31 ~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~--~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~G 108 (490)
+|+++++.|+++|+++.=+- |+...-.. |..+..+.+.....+-...+++++-+.||+.+|.|+.. |.|.+.
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~--~~~w~~-- 94 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD--PDYWDQ-- 94 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC--chhhhc--
Confidence 68999999999999988533 44432211 00000011222334566789999999999999999863 444442
Q ss_pred CCCChh-hHHHHHHHHHHHHHHhcCC--ccEEEEccCcc
Q 011240 109 GWKLEK-TIDYFMDFTRLVVDSVSDI--VDYWVTFNEPH 144 (490)
Q Consensus 109 Gw~n~~-~v~~F~~YA~~~f~~fgd~--Vk~W~T~NEP~ 144 (490)
.+.+ -++.=..-++.+.++||.. +.-|-.-+|+.
T Consensus 95 --~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 --GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred --cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1111 1222223556667778774 55666666654
No 45
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=88.54 E-value=0.83 Score=47.05 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCCCCCEEEeecCCCCCCCcc-cHHHHHHHHHHHHHHHHcCCCee-----EEEEEecccccCCcCC--
Q 011240 282 LFRVLHQFHERYKHLNLPFIITENGVSDETDLI-RRPYVIEHLLAVYAAMITGVPVI-----GYLFWTISDNWEWADG-- 353 (490)
Q Consensus 282 L~~~L~~i~~rY~~~~~PI~ITENG~~~~~D~~-Ri~yl~~hL~~v~~Ai~dGv~V~-----GY~~WSllDnfEW~~G-- 353 (490)
+.+.+....++-+..++||+|||+|++...+.. -..=-+.+...+.+.+.+|.+.+ -+++.+++|- .|-.|
T Consensus 212 ~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~~a~~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE-~~K~~~~ 290 (310)
T PF00332_consen 212 MVDAVYAAMEKLGFPNVPVVVGETGWPSAGDPGATPENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDE-NWKPGPE 290 (310)
T ss_dssp HHHHHHHHHHTTT-TT--EEEEEE---SSSSTTCSHHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB---TTSSSSG
T ss_pred HHHHHHHHHHHhCCCCceeEEeccccccCCCCCCCcchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecC-cCCCCCc
Confidence 344555555665544689999999999866511 11112334444555555665542 4677888775 45554
Q ss_pred CCCccceEEEcC
Q 011240 354 YGPKFGLVAVDR 365 (490)
Q Consensus 354 y~~rFGL~~VD~ 365 (490)
.+..|||++-|.
T Consensus 291 ~E~~wGlf~~d~ 302 (310)
T PF00332_consen 291 VERHWGLFYPDG 302 (310)
T ss_dssp GGGG--SB-TTS
T ss_pred ccceeeeECCCC
Confidence 578999997664
No 46
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=85.96 E-value=0.18 Score=54.90 Aligned_cols=112 Identities=20% Similarity=0.239 Sum_probs=73.3
Q ss_pred eEEEEEecccccCCcCC-CCCccceEEEcCCCCccccccchHHHHHHHHHcCCCCchhhh-hhhHHHHHHHHhccCCCcc
Q 011240 337 IGYLFWTISDNWEWADG-YGPKFGLVAVDRANNLARIPRPSYHLFTKVVTTGKVTREDRA-RAWSELQLAAKQKKTRPFY 414 (490)
Q Consensus 337 ~GY~~WSllDnfEW~~G-y~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~ 414 (490)
.-+.-|.|-++++|... |.....+|..+.-.+..+.-+...... ....|. =.+.-|+...++.+.
T Consensus 387 ~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l---------~D~~Ri~Y~~~~L~~~~kAi~~---- 453 (524)
T KOG0626|consen 387 LPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVAL---------KDTKRIEYLQNHLQAVLKAIKE---- 453 (524)
T ss_pred eeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhh---------cchHHHHHHHHHHHHHHHHHHh----
Confidence 34558999999999987 888888888876433222221111111 111221 223335555444432
Q ss_pred cccccccccccCCCCCCCCCCCCCCCccceeeeecCCCCccchhhhhhhc
Q 011240 415 RAVNKHGLMYAGGLDEPTQRPYIQRDWRFGHYQMEGLQDPLSRLSRCILR 464 (490)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (490)
..||=.|-++.-.+|-..+.+-.. +|||.|.|+ ++||+.|..+.-..
T Consensus 454 dgvnv~GYf~WSLmDnfEw~~Gy~--~RFGlyyVD-f~d~l~R~pK~Sa~ 500 (524)
T KOG0626|consen 454 DGVNVKGYFVWSLLDNFEWLDGYK--VRFGLYYVD-FKDPLKRYPKLSAK 500 (524)
T ss_pred cCCceeeEEEeEcccchhhhcCcc--cccccEEEe-CCCCCcCCchhHHH
Confidence 346778888888899888876544 999999999 99999998776554
No 47
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=85.44 E-value=1.6 Score=36.21 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=13.6
Q ss_pred HHHhcC--CccEEEEccC-cc
Q 011240 127 VDSVSD--IVDYWVTFNE-PH 144 (490)
Q Consensus 127 f~~fgd--~Vk~W~T~NE-P~ 144 (490)
+++||+ +|.+|-.+|| |+
T Consensus 2 v~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 2 VTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp HHHTT-GGGEEEEESSTTTT-
T ss_pred chhhcCCCCEEEEEeecCCCC
Confidence 566766 7999999999 76
No 48
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=82.93 E-value=6.4 Score=45.72 Aligned_cols=87 Identities=16% Similarity=0.118 Sum_probs=61.3
Q ss_pred ccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccC
Q 011240 29 WSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYG 108 (490)
Q Consensus 29 y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~G 108 (490)
...+++|+++||++|+|++|.| -.|.. .++.+-|=+.||=+|=-..+. -.|
T Consensus 320 ~~~~~~dl~lmk~~n~N~vRts-----HyP~~-----------------~~~ydLcDelGllV~~Ea~~~-------~~~ 370 (808)
T COG3250 320 EDAMERDLKLMKEANMNSVRTS-----HYPNS-----------------EEFYDLCDELGLLVIDEAMIE-------THG 370 (808)
T ss_pred HHHHHHHHHHHHHcCCCEEEec-----CCCCC-----------------HHHHHHHHHhCcEEEEecchh-------hcC
Confidence 3448999999999999999999 66653 135556667788777544332 123
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcCC--ccEEEEccCcc
Q 011240 109 GWKLEKTIDYFMDFTRLVVDSVSDI--VDYWVTFNEPH 144 (490)
Q Consensus 109 Gw~n~~~v~~F~~YA~~~f~~fgd~--Vk~W~T~NEP~ 144 (490)
+..+++..+...+=++.+++|-... |-.|+.=||..
T Consensus 371 ~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 371 MPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 3345566667777778888888774 78899988864
No 49
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=79.25 E-value=4.4 Score=45.36 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=72.2
Q ss_pred cChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEc--------cCCCCc
Q 011240 30 SDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTL--------FHHSLP 101 (490)
Q Consensus 30 ~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL--------~H~dlP 101 (490)
+.|++=|+.+|++|+|+.-.=+-|.-.+|.+ |.+|.+|.-=--.+|..+.++|+-+++-+ -|-.+|
T Consensus 49 e~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~------g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P 122 (649)
T KOG0496|consen 49 EMWPDLIKKAKAGGLNVIQTYVFWNLHEPSP------GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLP 122 (649)
T ss_pred hhhHHHHHHHHhcCCceeeeeeecccccCCC------CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcc
Confidence 3468889999999999999999999999986 77888886544567888899998766543 345778
Q ss_pred ccccccCCC----CChhhHHHHHHHHHHHHHHh
Q 011240 102 AWAGEYGGW----KLEKTIDYFMDFTRLVVDSV 130 (490)
Q Consensus 102 ~~l~~~GGw----~n~~~v~~F~~YA~~~f~~f 130 (490)
.||...-|- .|+.+-.++.+|.+.++...
T Consensus 123 ~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~m 155 (649)
T KOG0496|consen 123 WWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMM 155 (649)
T ss_pred hhhhhCCceEEecCChHHHHHHHHHHHHHHHHH
Confidence 888654332 25667778888888777644
No 50
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=76.67 E-value=13 Score=37.58 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=40.5
Q ss_pred CCcccccccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEcc
Q 011240 20 ITKEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF 96 (490)
Q Consensus 20 ~~~~~~~~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~ 96 (490)
.+.+-+|..=..+..|+++++.-+. ..|. . | .|...++ ++...+.+.|++.++.++
T Consensus 53 ~n~dGtCKSa~~~~sDLe~l~~~t~-~IR~-------Y---------~-sDCn~le---~v~pAa~~~g~kv~lGiw 108 (305)
T COG5309 53 YNDDGTCKSADQVASDLELLASYTH-SIRT-------Y---------G-SDCNTLE---NVLPAAEASGFKVFLGIW 108 (305)
T ss_pred cCCCCCCcCHHHHHhHHHHhccCCc-eEEE-------e---------e-ccchhhh---hhHHHHHhcCceEEEEEe
Confidence 3445578888899999999998776 4442 1 1 2333443 688899999999998874
No 51
>smart00642 Aamy Alpha-amylase domain.
Probab=73.08 E-value=13 Score=34.51 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=44.1
Q ss_pred cccccChHHHHHHHHhcCCCeEEecccccccc---------CCCCCCCCcCcCCh--HHHHHHHHHHHHHHHCCCEEEEE
Q 011240 26 LRFWSDPDIELKLAKDTGVSVFRLGIDWSRIM---------PAEPVNGLKETVNF--AALERYKWIINRVRSYGMKVMLT 94 (490)
Q Consensus 26 ~~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~---------P~~~~~G~~g~vn~--~gl~~Y~~lId~l~~~GI~PivT 94 (490)
.+-|....+-++-++++|+++.-++=-+.... |.. --.+|+ -..+=.++||++|+++||++|+.
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d-----~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD 89 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISD-----YKQIDPRFGTMEDFKELVDAAHARGIKVILD 89 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccc-----cCCCCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34567777888899999999998875443332 110 001111 12344679999999999999997
Q ss_pred cc
Q 011240 95 LF 96 (490)
Q Consensus 95 L~ 96 (490)
+.
T Consensus 90 ~V 91 (166)
T smart00642 90 VV 91 (166)
T ss_pred EC
Confidence 63
No 52
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=58.20 E-value=81 Score=32.16 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=68.6
Q ss_pred HHHHHHHHhcCC--CeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcc--------
Q 011240 33 DIELKLAKDTGV--SVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPA-------- 102 (490)
Q Consensus 33 ~eDi~lmk~lGv--~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~-------- 102 (490)
.+-++.+++.|+ +++=+.+.|..-.- .=.+|.+-..--..+|++|++.|+++++.+.-+-.+.
T Consensus 33 ~~~~~~~~~~~iP~d~i~iD~~w~~~~g-------~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~ 105 (303)
T cd06592 33 LNYAQEIIDNGFPNGQIEIDDNWETCYG-------DFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAV 105 (303)
T ss_pred HHHHHHHHHcCCCCCeEEeCCCccccCC-------ccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhh
Confidence 455678888885 46666667854221 1234443333356899999999999988665432221
Q ss_pred ----cccc-cC-------------C---CCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcc
Q 011240 103 ----WAGE-YG-------------G---WKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPH 144 (490)
Q Consensus 103 ----~l~~-~G-------------G---w~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~ 144 (490)
++.. .| + +.||+..+++.+..+.++...|=. -+|+=+|||.
T Consensus 106 ~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvd-g~w~D~~E~~ 167 (303)
T cd06592 106 EKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGID-SFKFDAGEAS 167 (303)
T ss_pred hCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCc-EEEeCCCCcc
Confidence 1111 11 1 678999999999999888788753 4688899996
No 53
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=52.83 E-value=50 Score=32.81 Aligned_cols=82 Identities=16% Similarity=0.259 Sum_probs=56.8
Q ss_pred hHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCCCC
Q 011240 32 PDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWK 111 (490)
Q Consensus 32 ~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw~ 111 (490)
-.+|++.+.+.|++..|++++.|-+.-..- -+.=-+++++-..++++.+++.|+++.+++-. .+
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~----~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~----------~~-- 134 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHK----LGKDRAWVLDQLRRLVGRAKDRGLFVSVGAED----------AS-- 134 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHH----hCCCHHHHHHHHHHHHHHHHHCCCeEEEeecc----------CC--
Confidence 378999999999999999998887643210 01113466788889999999999987755421 12
Q ss_pred ChhhHHHHHHHHHHHHHHhc
Q 011240 112 LEKTIDYFMDFTRLVVDSVS 131 (490)
Q Consensus 112 n~~~v~~F~~YA~~~f~~fg 131 (490)
+...+...+.++.+.+ .|
T Consensus 135 -~~~~~~~~~~~~~~~~-~G 152 (259)
T cd07939 135 -RADPDFLIEFAEVAQE-AG 152 (259)
T ss_pred -CCCHHHHHHHHHHHHH-CC
Confidence 2345677777776643 55
No 54
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=51.93 E-value=47 Score=32.49 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCCCCC
Q 011240 33 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKL 112 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw~n 112 (490)
+++++.+++.|++..|++++-|-+.-.-- .+.=.+..++-..+.|+.+++.|+++.+.+....-|
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~----~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~----------- 141 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKN----LNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC----------- 141 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHH----hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC-----------
Confidence 89999999999999999998773211100 000011235566788999999999999998664433
Q ss_pred hhhHHHHHHHHHHHHHHhc
Q 011240 113 EKTIDYFMDFTRLVVDSVS 131 (490)
Q Consensus 113 ~~~v~~F~~YA~~~f~~fg 131 (490)
....+.+.++++.+. .+|
T Consensus 142 ~~~~~~l~~~~~~~~-~~g 159 (265)
T cd03174 142 KTDPEYVLEVAKALE-EAG 159 (265)
T ss_pred CCCHHHHHHHHHHHH-HcC
Confidence 245567777777764 455
No 55
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=50.68 E-value=1.2e+02 Score=30.16 Aligned_cols=73 Identities=21% Similarity=0.312 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEccCC--------------CCccc--cc---------------cc-CC---CCChh---hH
Q 011240 75 ERYKWIINRVRSYGMKVMLTLFHH--------------SLPAW--AG---------------EY-GG---WKLEK---TI 116 (490)
Q Consensus 75 ~~Y~~lId~l~~~GI~PivTL~H~--------------dlP~~--l~---------------~~-GG---w~n~~---~v 116 (490)
+.+..+|+.-+++|.++|+||-=- ..|.+ -. .. |+ ..+|+ ..
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 467899999999999999997521 11221 01 00 11 11333 11
Q ss_pred HHHHHHHHHHHHHhcCC-----ccEEEEccCcchhc
Q 011240 117 DYFMDFTRLVVDSVSDI-----VDYWVTFNEPHVFC 147 (490)
Q Consensus 117 ~~F~~YA~~~f~~fgd~-----Vk~W~T~NEP~~~~ 147 (490)
.+-.+++..+..+||.. |++|..-|||.+..
T Consensus 104 ~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~ 139 (239)
T PF12891_consen 104 VYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWH 139 (239)
T ss_dssp EEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHH
T ss_pred hHHHHHHHHHHHHHhccccCCCceEEEecCchHhhc
Confidence 23344566677777775 99999999998753
No 56
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=50.64 E-value=88 Score=32.32 Aligned_cols=86 Identities=19% Similarity=0.276 Sum_probs=61.0
Q ss_pred cChHHHHHHHHhcCCCeEEec---cccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccc
Q 011240 30 SDPDIELKLAKDTGVSVFRLG---IDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGE 106 (490)
Q Consensus 30 ~~~~eDi~lmk~lGv~~yRfS---IsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~ 106 (490)
.|+.+--++++++|+|+.-+. ..-..+-|+ -++-...+-+.++..||++.+++. |.-|..+
T Consensus 57 ~R~~~YARllASiGINgvvlNNVNa~~~~Lt~~-------------~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l-- 120 (328)
T PF07488_consen 57 TRYRDYARLLASIGINGVVLNNVNANPKLLTPE-------------YLDKVARLADVFRPYGIKVYLSVN-FASPIEL-- 120 (328)
T ss_dssp HHHHHHHHHHHHTT--EEE-S-SS--CGGGSTT-------------THHHHHHHHHHHHHTT-EEEEEE--TTHHHHT--
T ss_pred hHHHHHHHHHhhcCCceEEecccccChhhcCHH-------------HHHHHHHHHHHHhhcCCEEEEEee-ccCCccc--
Confidence 467777899999999998764 233333332 255667899999999999999994 7788765
Q ss_pred cCCC-----CChhhHHHHHHHHHHHHHHhcC
Q 011240 107 YGGW-----KLEKTIDYFMDFTRLVVDSVSD 132 (490)
Q Consensus 107 ~GGw-----~n~~~v~~F~~YA~~~f~~fgd 132 (490)
||- +++++..++.+=|+.+.+..-|
T Consensus 121 -ggL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 121 -GGLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp -TS-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred -CCcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 443 5789999999999999998877
No 57
>PLN02361 alpha-amylase
Probab=50.23 E-value=37 Score=36.31 Aligned_cols=69 Identities=13% Similarity=0.223 Sum_probs=44.3
Q ss_pred ccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChH--HHHHHHHHHHHHHHCCCEEEEEc
Q 011240 27 RFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFA--ALERYKWIINRVRSYGMKVMLTL 95 (490)
Q Consensus 27 ~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~--gl~~Y~~lId~l~~~GI~PivTL 95 (490)
.+|..-.+-++-+++||+++.=++=...-.-+.+=-...--.+|.. ..+=++.||++|+++||++|+.+
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4788999999999999999998775433222221000000011110 12346799999999999999974
No 58
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=50.11 E-value=82 Score=32.40 Aligned_cols=99 Identities=21% Similarity=0.391 Sum_probs=61.6
Q ss_pred ChHHHHHHHHhcCCCeEEecccc-------ccccCCCC-CCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEc----c--
Q 011240 31 DPDIELKLAKDTGVSVFRLGIDW-------SRIMPAEP-VNGLKETVNFAALERYKWIINRVRSYGMKVMLTL----F-- 96 (490)
Q Consensus 31 ~~~eDi~lmk~lGv~~yRfSIsW-------sRI~P~~~-~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL----~-- 96 (490)
..++-++.|+++|+|+.=+-+.+ |.++|... .+|..|. + .|.|-...+|++++++||+...-+ -
T Consensus 20 ~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~-~-pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~ 97 (311)
T PF02638_consen 20 QIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGK-D-PGFDPLEFMIEEAHKRGLEVHAWFRVGFNAP 97 (311)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCC-C-CCccHHHHHHHHHHHcCCEEEEEEEeecCCC
Confidence 35778899999999987665543 33444211 1121111 1 234455679999999999977533 1
Q ss_pred ---C--CCCccccc--------cc----C--CCCC---hhhHHHHHHHHHHHHHHhc
Q 011240 97 ---H--HSLPAWAG--------EY----G--GWKL---EKTIDYFMDFTRLVVDSVS 131 (490)
Q Consensus 97 ---H--~dlP~~l~--------~~----G--Gw~n---~~~v~~F~~YA~~~f~~fg 131 (490)
| -..|.|+. .. | .|+| |++.++..+-++.++++|.
T Consensus 98 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 98 DVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred chhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1 12344432 12 2 2665 7888999999999999995
No 59
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=48.40 E-value=90 Score=36.39 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=61.6
Q ss_pred cCCCeEEeccc-cccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCC---CCccc--cc--------c-
Q 011240 42 TGVSVFRLGID-WSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHH---SLPAW--AG--------E- 106 (490)
Q Consensus 42 lGv~~yRfSIs-WsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~---dlP~~--l~--------~- 106 (490)
+=++++++.+. |.+ ... .=++|..-.--=+.||+.|++.||+.++-+... |.|+. +. .
T Consensus 294 IP~d~~~lD~~~~~~--~~~-----~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~ 366 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWG-----DFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPD 366 (772)
T ss_pred CcceEEEEeehhhhc--ccc-----ceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCC
Confidence 44779999995 875 111 012232222222479999999999999877643 33332 10 0
Q ss_pred -----------cC---CCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchhccc
Q 011240 107 -----------YG---GWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCML 149 (490)
Q Consensus 107 -----------~G---Gw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~~~~ 149 (490)
.+ -+.||+.+++|.+....-+-.+|- .-+|.=+|||.++...
T Consensus 367 g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv-~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 367 GEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGV-DGFWNDMNEPEPFDGD 422 (772)
T ss_pred CCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCc-cEEEccCCCCcccccc
Confidence 01 267899999999733322333442 4689999999988654
No 60
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=47.32 E-value=34 Score=34.28 Aligned_cols=61 Identities=20% Similarity=0.147 Sum_probs=46.1
Q ss_pred hHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEcc
Q 011240 32 PDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF 96 (490)
Q Consensus 32 ~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~ 96 (490)
-.+|++.+.+.|++..|+.++=|...-... .+.=-++.++...+++..+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~----~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREAS----HGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHH----hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 378999999999999999886655332210 0111256688899999999999999998885
No 61
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=47.31 E-value=57 Score=33.93 Aligned_cols=106 Identities=11% Similarity=0.149 Sum_probs=59.8
Q ss_pred HHHHHHhcCC--CeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCC-cccccccC---
Q 011240 35 ELKLAKDTGV--SVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSL-PAWAGEYG--- 108 (490)
Q Consensus 35 Di~lmk~lGv--~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dl-P~~l~~~G--- 108 (490)
-++.+++.++ +++=+.|.|..-.- .-++|.+-..--+.++++|++.|++.++.+.-+-. -......|
T Consensus 29 v~~~~r~~~IP~D~i~lDidy~~~~~-------~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~p 101 (332)
T cd06601 29 VVEGYRDNNIPLDGLHVDVDFQDNYR-------TFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYP 101 (332)
T ss_pred HHHHHHHcCCCCceEEEcCchhcCCC-------ceeecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceee
Confidence 3445555554 45556666642111 12333322222257999999999997775532100 00000112
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchhccc
Q 011240 109 GWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCML 149 (490)
Q Consensus 109 Gw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~~~~ 149 (490)
-|.|++..++|.+..+.+.+ .|-. -+|+=+|||.+++..
T Consensus 102 Dftnp~ar~wW~~~~~~l~~-~Gv~-~~W~DmnEp~~~~~~ 140 (332)
T cd06601 102 DLGRPDVREWWGNQYKYLFD-IGLE-FVWQDMTTPAIMPSY 140 (332)
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCCc-eeecCCCCcccccCC
Confidence 37789999998877655443 3433 389999999987653
No 62
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=47.06 E-value=58 Score=33.00 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=63.9
Q ss_pred ChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCCC
Q 011240 31 DPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGW 110 (490)
Q Consensus 31 ~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw 110 (490)
+-+.|++++++.|++..+++++=|...-..- .+.--++.++-..++|..+++.|+++.+++-+|+.|-
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~----~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-------- 142 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQ----LRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-------- 142 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHH----HCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC--------
Confidence 4578999999999999999986665544310 0122366788889999999999999999998877664
Q ss_pred CChhhHHHHHHHHHHHHHHhcC
Q 011240 111 KLEKTIDYFMDFTRLVVDSVSD 132 (490)
Q Consensus 111 ~n~~~v~~F~~YA~~~f~~fgd 132 (490)
+...+.+.++++.+.+ .|-
T Consensus 143 --r~~~~~~~~~~~~~~~-~G~ 161 (280)
T cd07945 143 --RDSPDYVFQLVDFLSD-LPI 161 (280)
T ss_pred --cCCHHHHHHHHHHHHH-cCC
Confidence 1234677777877644 453
No 63
>PLN00196 alpha-amylase; Provisional
Probab=45.58 E-value=34 Score=36.95 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=45.2
Q ss_pred ccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCCh---HHHHHHHHHHHHHHHCCCEEEEE--ccCC
Q 011240 27 RFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNF---AALERYKWIINRVRSYGMKVMLT--LFHH 98 (490)
Q Consensus 27 ~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~---~gl~~Y~~lId~l~~~GI~PivT--L~H~ 98 (490)
++|..-.+.+.-+++||+++.=++=...-.-+.+=-...--.+|. -..+=+++||++|+++||++|+. +.|-
T Consensus 41 g~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~ 117 (428)
T PLN00196 41 GWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHR 117 (428)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCc
Confidence 367777899999999999999888544322221100000011221 01234689999999999999997 4464
No 64
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=41.13 E-value=88 Score=32.89 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=57.7
Q ss_pred ChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCCC
Q 011240 31 DPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGW 110 (490)
Q Consensus 31 ~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw 110 (490)
-..+|++.+.+.|++..|++++-|.+.-... -+.=-.+.++-..+.|..+++.|++..+++-..
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~----~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda------------ 135 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYK----LKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDA------------ 135 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHH----hCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeec------------
Confidence 3589999999999999999988776643210 011234567778899999999999988776321
Q ss_pred CChhhHHHHHHHHHHHHHHhc
Q 011240 111 KLEKTIDYFMDFTRLVVDSVS 131 (490)
Q Consensus 111 ~n~~~v~~F~~YA~~~f~~fg 131 (490)
.+...+.+.++++.+. ..|
T Consensus 136 -~r~~~~~l~~~~~~~~-~~g 154 (363)
T TIGR02090 136 -TRTDIDFLIKVFKRAE-EAG 154 (363)
T ss_pred -CCCCHHHHHHHHHHHH-hCC
Confidence 1334567777777653 444
No 65
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=40.22 E-value=1e+02 Score=32.79 Aligned_cols=72 Identities=18% Similarity=0.406 Sum_probs=46.9
Q ss_pred cChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCC
Q 011240 30 SDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGG 109 (490)
Q Consensus 30 ~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GG 109 (490)
..|++||++++++|+++|=+.|- -+ ...+.+-| ..+.+.+.+.|.+.++.+ |+... +-
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig----~~--------d~~~~~~l---~~a~~AA~~~gFKlf~Sf---D~~~~----~~ 74 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG----SS--------DSWQPDQL---ADAYQAAEAVGFKLFFSF---DMNSL----GP 74 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc----cC--------CcccHHHH---HHHHHHHHhcCCEEEEEe---cccCC----CC
Confidence 46899999999999999998886 11 23444444 478888999997777654 44321 33
Q ss_pred CCChhhHHHHHHHH
Q 011240 110 WKLEKTIDYFMDFT 123 (490)
Q Consensus 110 w~n~~~v~~F~~YA 123 (490)
|...+++.....|+
T Consensus 75 ~~~~~~~~~i~~y~ 88 (386)
T PF03659_consen 75 WSQDELIALIKKYA 88 (386)
T ss_pred CCHHHHHHHHHHHc
Confidence 44444444444444
No 66
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=40.19 E-value=93 Score=32.66 Aligned_cols=83 Identities=16% Similarity=0.226 Sum_probs=57.4
Q ss_pred hHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCCCC
Q 011240 32 PDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWK 111 (490)
Q Consensus 32 ~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw~ 111 (490)
-++||+.+.+.|++..++.++-|.+.-... -+.=-.+.++-..+.|+.++++|+++.+++- + ++
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~----~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e---------d-~~-- 137 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAK----LRKDRAWVLERLARLVSFARDRGLFVSVGGE---------D-AS-- 137 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHH----hCcCHHHHHHHHHHHHHHHHhCCCEEEEeec---------C-CC--
Confidence 489999999999999999998876433210 0111245678888999999999999775532 1 22
Q ss_pred ChhhHHHHHHHHHHHHHHhcC
Q 011240 112 LEKTIDYFMDFTRLVVDSVSD 132 (490)
Q Consensus 112 n~~~v~~F~~YA~~~f~~fgd 132 (490)
+...+.+.++++.+. ..|-
T Consensus 138 -r~~~~~l~~~~~~~~-~~Ga 156 (365)
T TIGR02660 138 -RADPDFLVELAEVAA-EAGA 156 (365)
T ss_pred -CCCHHHHHHHHHHHH-HcCc
Confidence 234577777777764 4563
No 67
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=39.82 E-value=1.2e+02 Score=30.48 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCCCCC
Q 011240 33 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKL 112 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw~n 112 (490)
.+|++.+.+.|++..|+++..+. ++-..++++.++++|+++.+++.+-.
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~~------------------~~~~~~~i~~ak~~G~~v~~~~~~a~------------- 133 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKHE------------------FDEALPLIKAIKEKGYEVFFNLMAIS------------- 133 (266)
T ss_pred HHHHHHHhcCCcCEEEEeccccc------------------HHHHHHHHHHHHHCCCeEEEEEEeec-------------
Confidence 58899999999999999874421 44557899999999999999887631
Q ss_pred hhhHHHHHHHHHHHHHHhc
Q 011240 113 EKTIDYFMDFTRLVVDSVS 131 (490)
Q Consensus 113 ~~~v~~F~~YA~~~f~~fg 131 (490)
....+.+.++++.+.+ .|
T Consensus 134 ~~~~~~~~~~~~~~~~-~g 151 (266)
T cd07944 134 GYSDEELLELLELVNE-IK 151 (266)
T ss_pred CCCHHHHHHHHHHHHh-CC
Confidence 1346777888887644 45
No 68
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=38.34 E-value=87 Score=28.11 Aligned_cols=54 Identities=9% Similarity=0.140 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCCeEEecc------cc--ccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEc
Q 011240 33 DIELKLAKDTGVSVFRLGI------DW--SRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTL 95 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSI------sW--sRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL 95 (490)
++=++.||++|+|+.-+-. +| |++.+. ....+ -+...++|++|+++||++++=+
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~--------hp~L~-~Dllge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPR--------HPGLK-RDLLGEQVEACHERGIRVPAYF 64 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcC--------CCCCC-cCHHHHHHHHHHHCCCEEEEEE
Confidence 4568899999999999822 33 223222 22222 4678899999999999999743
No 69
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=38.26 E-value=1.5e+02 Score=30.81 Aligned_cols=61 Identities=13% Similarity=0.129 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcc
Q 011240 34 IELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPA 102 (490)
Q Consensus 34 eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~ 102 (490)
-+++.+|++|.++..|=+=|. |++ .-.+|..=.+|-.++.++|+++||-=++-+.-+|.+.
T Consensus 111 ws~~rike~GadavK~Llyy~---pD~-----~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~ 171 (329)
T PRK04161 111 WSVKRLKEAGADAVKFLLYYD---VDG-----DEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERI 171 (329)
T ss_pred hhHHHHHHhCCCeEEEEEEEC---CCC-----CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCcc
Confidence 468899999999999988775 553 2468888899999999999999999988888775544
No 70
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=38.20 E-value=74 Score=34.80 Aligned_cols=73 Identities=16% Similarity=0.358 Sum_probs=55.1
Q ss_pred ccChHHH-----HHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCccc
Q 011240 29 WSDPDIE-----LKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAW 103 (490)
Q Consensus 29 y~~~~eD-----i~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~ 103 (490)
|..|.+| ++++++-|++.+|..-.... ++--...|+.+++.|....+++.|=+.|
T Consensus 99 y~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd------------------~~n~~~ai~~ak~~G~~~~~~i~yt~sp-- 158 (468)
T PRK12581 99 YRHYADDIVDKFISLSAQNGIDVFRIFDALND------------------PRNIQQALRAVKKTGKEAQLCIAYTTSP-- 158 (468)
T ss_pred ccCCcchHHHHHHHHHHHCCCCEEEEcccCCC------------------HHHHHHHHHHHHHcCCEEEEEEEEEeCC--
Confidence 4556677 99999999999998753321 2233578999999999999999886666
Q ss_pred ccccCCCCChhhHHHHHHHHHHHHHHhc
Q 011240 104 AGEYGGWKLEKTIDYFMDFTRLVVDSVS 131 (490)
Q Consensus 104 l~~~GGw~n~~~v~~F~~YA~~~f~~fg 131 (490)
..+++++.+.|+.+.+ .|
T Consensus 159 ---------~~t~~y~~~~a~~l~~-~G 176 (468)
T PRK12581 159 ---------VHTLNYYLSLVKELVE-MG 176 (468)
T ss_pred ---------cCcHHHHHHHHHHHHH-cC
Confidence 2467889999988753 55
No 71
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=38.09 E-value=66 Score=36.96 Aligned_cols=60 Identities=17% Similarity=0.303 Sum_probs=40.6
Q ss_pred HHHHHhcCCCeEE----eccccccccCCCC--------------CCCCcCcCCh---HHHHHHHHHHHHHHHCCCEEEEE
Q 011240 36 LKLAKDTGVSVFR----LGIDWSRIMPAEP--------------VNGLKETVNF---AALERYKWIINRVRSYGMKVMLT 94 (490)
Q Consensus 36 i~lmk~lGv~~yR----fSIsWsRI~P~~~--------------~~G~~g~vn~---~gl~~Y~~lId~l~~~GI~PivT 94 (490)
|+-+|+|||++.. |++.+-+...+.. .+| ...-|. ..+.=+++||++|.++||++|+.
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~-~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEG-RYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCc-cccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 9999999999998 4555555543210 011 112233 24666799999999999999997
Q ss_pred cc
Q 011240 95 LF 96 (490)
Q Consensus 95 L~ 96 (490)
+.
T Consensus 285 VV 286 (697)
T COG1523 285 VV 286 (697)
T ss_pred Ee
Confidence 53
No 72
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=37.88 E-value=1.1e+02 Score=33.38 Aligned_cols=73 Identities=19% Similarity=0.331 Sum_probs=54.3
Q ss_pred ccChHHH-----HHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCccc
Q 011240 29 WSDPDIE-----LKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAW 103 (490)
Q Consensus 29 y~~~~eD-----i~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~ 103 (490)
|..|.+| ++.+.+.|++.+|+.++-|-+ +--...|+.++++|+....++.+-..|
T Consensus 89 ~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~------------------~n~~~~i~~ak~~G~~v~~~i~~t~~p-- 148 (467)
T PRK14041 89 YRHYADDVVELFVKKVAEYGLDIIRIFDALNDI------------------RNLEKSIEVAKKHGAHVQGAISYTVSP-- 148 (467)
T ss_pred cccccchhhHHHHHHHHHCCcCEEEEEEeCCHH------------------HHHHHHHHHHHHCCCEEEEEEEeccCC--
Confidence 4557777 999999999999999866542 223567899999999988888654445
Q ss_pred ccccCCCCChhhHHHHHHHHHHHHHHhc
Q 011240 104 AGEYGGWKLEKTIDYFMDFTRLVVDSVS 131 (490)
Q Consensus 104 l~~~GGw~n~~~v~~F~~YA~~~f~~fg 131 (490)
....+.+.+.|+.+.+ .|
T Consensus 149 ---------~~t~e~~~~~a~~l~~-~G 166 (467)
T PRK14041 149 ---------VHTLEYYLEFARELVD-MG 166 (467)
T ss_pred ---------CCCHHHHHHHHHHHHH-cC
Confidence 2357888888887654 45
No 73
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=37.34 E-value=1.6e+02 Score=30.65 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=49.2
Q ss_pred HHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcc
Q 011240 35 ELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPA 102 (490)
Q Consensus 35 Di~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~ 102 (490)
-++.+|++|.++..|=+=|. |++ ...+|..=.+|-.++.++|+++||-=++-+.-+|.+.
T Consensus 110 S~~rike~GadavK~Llyy~---pD~-----~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~ 169 (324)
T PRK12399 110 SAKRIKEEGADAVKFLLYYD---VDE-----PDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEKI 169 (324)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCC-----CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCcc
Confidence 37889999999999988775 553 2468988899999999999999998888777665543
No 74
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=36.55 E-value=1.3e+02 Score=34.09 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCCCCC
Q 011240 33 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKL 112 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw~n 112 (490)
++|++.+++.|++.+|+..+.+-+ +--...|+.++++|....+++.+=+.|
T Consensus 100 ~~~v~~a~~~Gid~~rifd~lnd~------------------~~~~~ai~~ak~~G~~~~~~i~yt~~p----------- 150 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFDAMNDP------------------RNLETALKAVRKVGAHAQGTLSYTTSP----------- 150 (593)
T ss_pred HHHHHHHHhcCCCEEEEeeeCCcH------------------HHHHHHHHHHHHcCCeEEEEEEEeeCC-----------
Confidence 445999999999999999644332 233467888889999877777543334
Q ss_pred hhhHHHHHHHHHHHH
Q 011240 113 EKTIDYFMDFTRLVV 127 (490)
Q Consensus 113 ~~~v~~F~~YA~~~f 127 (490)
.++.+++.+.|+.+.
T Consensus 151 ~~~~~~~~~~a~~l~ 165 (593)
T PRK14040 151 VHTLQTWVDLAKQLE 165 (593)
T ss_pred ccCHHHHHHHHHHHH
Confidence 234677777777654
No 75
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=36.44 E-value=1.7e+02 Score=30.60 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=43.5
Q ss_pred HHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEcc
Q 011240 36 LKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF 96 (490)
Q Consensus 36 i~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~ 96 (490)
++-++++|.++.-+-+-|. |+. ...+|..-+++-.++.++|.+.||.-++-+.
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~-----~~~~~~~~~~~l~rv~~ec~~~giPlllE~l 164 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDE-----DDAINDRKHAFVERVGAECRANDIPFFLEPL 164 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCc-----chHHHHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 5779999999999999886 542 1246788888999999999999999888543
No 76
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=36.33 E-value=1.2e+02 Score=31.78 Aligned_cols=86 Identities=15% Similarity=0.202 Sum_probs=55.7
Q ss_pred HHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCCCCChh
Q 011240 35 ELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKLEK 114 (490)
Q Consensus 35 Di~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw~n~~ 114 (490)
-|++|.+.|++..=+|+ +.|++ .....+..+.++++.+.+.|+++||.. .|+.|.+ -|| +.+
T Consensus 21 Yi~~~~~~Gf~~IFtsl----~~~~~--------~~~~~~~~~~ell~~Anklg~~vivDv----nPsil~~-l~~-S~~ 82 (360)
T COG3589 21 YIDRMHKYGFKRIFTSL----LIPEE--------DAELYFHRFKELLKEANKLGLRVIVDV----NPSILKE-LNI-SLD 82 (360)
T ss_pred HHHHHHHcCccceeeec----ccCCc--------hHHHHHHHHHHHHHHHHhcCcEEEEEc----CHHHHhh-cCC-ChH
Confidence 46788888887666554 34432 234578899999999999999999998 6887764 344 334
Q ss_pred hHHHHHHHHHHHHHHhcCCccEEEEccCc
Q 011240 115 TIDYFMDFTRLVVDSVSDIVDYWVTFNEP 143 (490)
Q Consensus 115 ~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP 143 (490)
.++.|.+.+- .|=|.++=++.-|.
T Consensus 83 ~l~~f~e~G~-----~glRlD~gfS~eei 106 (360)
T COG3589 83 NLSRFQELGV-----DGLRLDYGFSGEEI 106 (360)
T ss_pred HHHHHHHhhh-----hheeecccCCHHHH
Confidence 4555544422 23355555554443
No 77
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=36.21 E-value=1.1e+02 Score=31.73 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=49.3
Q ss_pred HHHHHHHHHCCCEEEEEccCCCCc-----ccc--c--------cc----------C-----CCCChhhHHHHHHHHHHHH
Q 011240 78 KWIINRVRSYGMKVMLTLFHHSLP-----AWA--G--------EY----------G-----GWKLEKTIDYFMDFTRLVV 127 (490)
Q Consensus 78 ~~lId~l~~~GI~PivTL~H~dlP-----~~l--~--------~~----------G-----Gw~n~~~v~~F~~YA~~~f 127 (490)
+.+|+.|+++|++.++.+.-+-.+ ..- . .. | -+.|++.+++|.+..+.+.
T Consensus 67 ~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06603 67 EKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDK 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHh
Confidence 579999999999998887655322 110 0 00 1 3678999999999988776
Q ss_pred HHhcC-CccEEEEccCcchhc
Q 011240 128 DSVSD-IVDYWVTFNEPHVFC 147 (490)
Q Consensus 128 ~~fgd-~Vk~W~T~NEP~~~~ 147 (490)
...+. -+-.|+=+|||.++.
T Consensus 147 ~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 147 YKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hcccCCCceEEeccCCccccC
Confidence 54322 246799999998764
No 78
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=35.70 E-value=1.4e+02 Score=31.06 Aligned_cols=106 Identities=16% Similarity=0.218 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCCCe--EEeccccccccCCCCCCCCcCcCChHHHHHH--HHHHHHHHHCCCEEEEEccCCCCcc-----c
Q 011240 33 DIELKLAKDTGVSV--FRLGIDWSRIMPAEPVNGLKETVNFAALERY--KWIINRVRSYGMKVMLTLFHHSLPA-----W 103 (490)
Q Consensus 33 ~eDi~lmk~lGv~~--yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y--~~lId~l~~~GI~PivTL~H~dlP~-----~ 103 (490)
++-++.+++.|+.. +=+.+.|..-. + .=.+|.+-..-- +++|+.|++.|++.++.+.-+-.+. .
T Consensus 27 ~~~~~~~r~~~iP~d~i~lD~~~~~~~--~-----~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~ 99 (339)
T cd06602 27 KEVVENMRAAGIPLDVQWNDIDYMDRR--R-----DFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSY 99 (339)
T ss_pred HHHHHHHHHhCCCcceEEECcccccCc--c-----ceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCC
Confidence 45567777777664 33445554211 0 012222211112 6899999999999998876553332 0
Q ss_pred --cc---c--------------------cC---CCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchh
Q 011240 104 --AG---E--------------------YG---GWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVF 146 (490)
Q Consensus 104 --l~---~--------------------~G---Gw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~ 146 (490)
++ + .+ -+.|++.+++|.+.-+.++..+|-. -+|+=+|||..+
T Consensus 100 ~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvd-g~w~D~~Ep~~~ 169 (339)
T cd06602 100 PPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFD-GLWIDMNEPSNF 169 (339)
T ss_pred HHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCc-EEEecCCCCchH
Confidence 00 0 01 2678999999988887777666642 468889999754
No 79
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=35.10 E-value=1.2e+02 Score=30.77 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=62.6
Q ss_pred ChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccC-CCCcccccccCC
Q 011240 31 DPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFH-HSLPAWAGEYGG 109 (490)
Q Consensus 31 ~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H-~dlP~~l~~~GG 109 (490)
.-.+|++++.+.|++.+++.++=|-..-.. . .+.=-++.++-..+.|+.++++|+++.+++.. |..|. .|
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~---n-~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~-----~~ 150 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQK---N-INCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY-----EG 150 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHH---H-hCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC-----CC
Confidence 458999999999999999998666442211 0 12223467888899999999999999887764 44452 23
Q ss_pred CCChhhHHHHHHHHHHHHHHhcC
Q 011240 110 WKLEKTIDYFMDFTRLVVDSVSD 132 (490)
Q Consensus 110 w~n~~~v~~F~~YA~~~f~~fgd 132 (490)
. ...+.+.++++.+.+ .|-
T Consensus 151 ~---~~~~~~~~~~~~~~~-~G~ 169 (287)
T PRK05692 151 E---VPPEAVADVAERLFA-LGC 169 (287)
T ss_pred C---CCHHHHHHHHHHHHH-cCC
Confidence 2 346788888888754 453
No 80
>PRK12313 glycogen branching enzyme; Provisional
Probab=34.47 E-value=3e+02 Score=31.21 Aligned_cols=94 Identities=14% Similarity=0.286 Sum_probs=58.2
Q ss_pred hHHH-HHHHHhcCCCeEEec-c-------cc-------ccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEc
Q 011240 32 PDIE-LKLAKDTGVSVFRLG-I-------DW-------SRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTL 95 (490)
Q Consensus 32 ~~eD-i~lmk~lGv~~yRfS-I-------sW-------sRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL 95 (490)
..+. ++-+|+||+++.=+. | +| -.|.|. -|. .+=.++||++|+++||++|+.+
T Consensus 172 ~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~------~Gt-----~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 172 LADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSR------YGT-----PEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCC------CCC-----HHHHHHHHHHHHHCCCEEEEEE
Confidence 3456 488999999998755 2 22 112222 122 2335799999999999999984
Q ss_pred c--CCCCcc----ccc--------c-----cCCC-------CChhhHHHHHHHHHHHHHHhcCCccEEE
Q 011240 96 F--HHSLPA----WAG--------E-----YGGW-------KLEKTIDYFMDFTRLVVDSVSDIVDYWV 138 (490)
Q Consensus 96 ~--H~dlP~----~l~--------~-----~GGw-------~n~~~v~~F~~YA~~~f~~fgd~Vk~W~ 138 (490)
. |..-.. ++. + ..+| .|+++.+.+.+=++.-+++|| |+-|=
T Consensus 241 V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~--iDG~R 307 (633)
T PRK12313 241 VPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH--LDGLR 307 (633)
T ss_pred CCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC--CcEEE
Confidence 4 542110 110 0 0123 367888888888888888876 44443
No 81
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=34.35 E-value=1.3e+02 Score=31.69 Aligned_cols=87 Identities=11% Similarity=-0.007 Sum_probs=63.0
Q ss_pred hHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccC-CCCcccccccCCC
Q 011240 32 PDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFH-HSLPAWAGEYGGW 110 (490)
Q Consensus 32 ~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H-~dlP~~l~~~GGw 110 (490)
-.+|++.+.+.|++...+.++=|...-..- .+.=-++.++-+.++|+.++++|+++.+++-. |..|.. |
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n----~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~-----~- 192 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSN----INCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIE-----G- 192 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHH----hCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCcc-----C-
Confidence 579999999999999999987776544320 12224677888999999999999999877753 555532 2
Q ss_pred CChhhHHHHHHHHHHHHHHhc
Q 011240 111 KLEKTIDYFMDFTRLVVDSVS 131 (490)
Q Consensus 111 ~n~~~v~~F~~YA~~~f~~fg 131 (490)
+-.++.+.++++.+.+ .|
T Consensus 193 --r~~~~~l~~~~~~~~~-~G 210 (347)
T PLN02746 193 --PVPPSKVAYVAKELYD-MG 210 (347)
T ss_pred --CCCHHHHHHHHHHHHH-cC
Confidence 2346778888887654 45
No 82
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=34.30 E-value=1.3e+02 Score=29.53 Aligned_cols=73 Identities=15% Similarity=0.311 Sum_probs=47.4
Q ss_pred cChHHHHHHHHhcCCCeEEe----------------------ccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHC
Q 011240 30 SDPDIELKLAKDTGVSVFRL----------------------GIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSY 87 (490)
Q Consensus 30 ~~~~eDi~lmk~lGv~~yRf----------------------SIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~ 87 (490)
=..+.=++||++||.++..| ++ | ++|. |.+| ++.+..++..+++.
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPT-------GGId---l~Nf~~I~~i~lda 201 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPT-------GGID---LDNFEEIVQIALDA 201 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCC-------CCcc---HHhHHHHHHHHHHc
Confidence 34577799999999998875 33 3 5775 3466 67788999999999
Q ss_pred CCEEEEEccCCCCcccccccCCCCChhhHHH
Q 011240 88 GMKVMLTLFHHSLPAWAGEYGGWKLEKTIDY 118 (490)
Q Consensus 88 GI~PivTL~H~dlP~~l~~~GGw~n~~~v~~ 118 (490)
|++-++- |- .-.-++..-|-+.++-|..
T Consensus 202 Gv~kviP--HI-YssiIDk~tG~TrpedV~~ 229 (236)
T TIGR03581 202 GVEKVIP--HV-YSSIIDKETGNTRVEDVKQ 229 (236)
T ss_pred CCCeecc--cc-ceeccccccCCCCHHHHHH
Confidence 9987632 10 0112233456666554443
No 83
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=34.30 E-value=1.6e+02 Score=31.95 Aligned_cols=70 Identities=14% Similarity=0.281 Sum_probs=52.1
Q ss_pred hHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCCCC
Q 011240 32 PDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWK 111 (490)
Q Consensus 32 ~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw~ 111 (490)
-++||+.+.+.|++.+|+.++-+-+. | ....|+.++++|+.+.+++..-+-|
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~------------n------~~~~v~~ak~~G~~v~~~i~~t~~p---------- 149 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDVR------------N------LETAVKATKKAGGHAQVAISYTTSP---------- 149 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHH------------H------HHHHHHHHHHcCCeEEEEEEeecCC----------
Confidence 36788999999999999998655431 1 3458999999999998888765444
Q ss_pred ChhhHHHHHHHHHHHHHHhc
Q 011240 112 LEKTIDYFMDFTRLVVDSVS 131 (490)
Q Consensus 112 n~~~v~~F~~YA~~~f~~fg 131 (490)
....+.+.+.|+.+. ..|
T Consensus 150 -~~~~~~~~~~a~~l~-~~G 167 (448)
T PRK12331 150 -VHTIDYFVKLAKEMQ-EMG 167 (448)
T ss_pred -CCCHHHHHHHHHHHH-HcC
Confidence 245678888888774 355
No 84
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=33.80 E-value=6.7e+02 Score=27.51 Aligned_cols=97 Identities=19% Similarity=0.256 Sum_probs=57.8
Q ss_pred HHHHHHHHhcCCCeEEec-------ccccc-ccCCCCC----C---CCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccC
Q 011240 33 DIELKLAKDTGVSVFRLG-------IDWSR-IMPAEPV----N---GLKETVNFAALERYKWIINRVRSYGMKVMLTLFH 97 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfS-------IsWsR-I~P~~~~----~---G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H 97 (490)
++=++++|+|.+...|+- -.|.- |=|.+.+ + | .-+-|+=|. +++++-|...|.+|++.+.=
T Consensus 52 kDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~-t~EtN~~Gt---~EF~~~~e~iGaep~~avN~ 127 (501)
T COG3534 52 KDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWG-TTETNEFGT---HEFMDWCELIGAEPYIAVNL 127 (501)
T ss_pred HHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccc-ccccccccH---HHHHHHHHHhCCceEEEEec
Confidence 344799999999999952 23432 2222100 0 0 011233333 58999999999999998742
Q ss_pred CCCcccccccCCCCChhhHHHHHHHHHH--------HHHHhcC----CccEEEEccCcc
Q 011240 98 HSLPAWAGEYGGWKLEKTIDYFMDFTRL--------VVDSVSD----IVDYWVTFNEPH 144 (490)
Q Consensus 98 ~dlP~~l~~~GGw~n~~~v~~F~~YA~~--------~f~~fgd----~Vk~W~T~NEP~ 144 (490)
|. ..-+....|.+||.. .=...|- .||+|+.=||-.
T Consensus 128 ----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~ 175 (501)
T COG3534 128 ----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMD 175 (501)
T ss_pred ----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccC
Confidence 21 223556677777742 1123333 499999999963
No 85
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=33.68 E-value=3.2e+02 Score=29.23 Aligned_cols=92 Identities=22% Similarity=0.307 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCCCeEEeccccccc-----------cCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEE-------
Q 011240 33 DIELKLAKDTGVSVFRLGIDWSRI-----------MPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLT------- 94 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSIsWsRI-----------~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivT------- 94 (490)
.+-++.++++|++.|=+.--|..- .|++ ..+ +.|+ ..+++.+++.||++=+=
T Consensus 61 ~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~------~kF-P~Gl---~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 61 LELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP------KKF-PNGL---KPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT------TTS-TTHH---HHHHHHHHHTT-EEEEEEETTEEE
T ss_pred HHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh------hhh-CCcH---HHHHHHHHHCCCeEEEEecccccc
Confidence 345688999999999988899643 2321 112 2455 47999999999998652
Q ss_pred ----ccCCCCcccccccC------C-------CCChhhHHHHHHHHHHHHHHhcCCccEE
Q 011240 95 ----LFHHSLPAWAGEYG------G-------WKLEKTIDYFMDFTRLVVDSVSDIVDYW 137 (490)
Q Consensus 95 ----L~H~dlP~~l~~~G------G-------w~n~~~v~~F~~YA~~~f~~fgd~Vk~W 137 (490)
|+ -..|.|+...+ | ..+|++.++..+-...+++.+| |+|.
T Consensus 131 ~~S~l~-~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g--idYi 187 (394)
T PF02065_consen 131 PDSDLY-REHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG--IDYI 187 (394)
T ss_dssp SSSCHC-CSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT---SEE
T ss_pred chhHHH-HhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC--CCEE
Confidence 22 24688863211 1 3468888988888888888887 4443
No 86
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=33.28 E-value=1.7e+02 Score=27.23 Aligned_cols=56 Identities=21% Similarity=0.411 Sum_probs=35.8
Q ss_pred cccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCc
Q 011240 28 FWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLP 101 (490)
Q Consensus 28 ~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP 101 (490)
+|+. .-|.+.+|+.|++..=+=+. + |. +.+|+ +|..-++.++++|| .+..|||-.|
T Consensus 7 ~~q~-~id~~~~k~~gi~fviiKat------e----G~-~y~D~----~~~~~~~~a~~aGl--~~G~Yhy~~~ 62 (184)
T cd06525 7 NWQG-NINFNAVKDSGVEVVYIKAT------E----GT-TFVDS----YFNENYNGAKAAGL--KVGFYHFLVG 62 (184)
T ss_pred CCCC-CCCHHHHHhCCCeEEEEEec------C----CC-cccCH----hHHHHHHHHHHCCC--ceEEEEEeeC
Confidence 3444 35778888888764322221 2 32 45675 56788999999999 3688887544
No 87
>PRK05402 glycogen branching enzyme; Provisional
Probab=32.28 E-value=3.3e+02 Score=31.53 Aligned_cols=92 Identities=13% Similarity=0.263 Sum_probs=56.9
Q ss_pred HHH-HHHHhcCCCeEEec-c-------ccc-------cccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEcc-
Q 011240 34 IEL-KLAKDTGVSVFRLG-I-------DWS-------RIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF- 96 (490)
Q Consensus 34 eDi-~lmk~lGv~~yRfS-I-------sWs-------RI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~- 96 (490)
+.+ .-+|+||+++.=+. | +|- .|.|. -|. .+=.++||++|+++||++|+.+.
T Consensus 269 ~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~------~Gt-----~~dfk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 269 DQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSR------FGT-----PDDFRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcc------cCC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 443 77899999998765 2 121 12221 122 23357899999999999999853
Q ss_pred -CCCC-----------cccccc------cC-------CCCChhhHHHHHHHHHHHHHHhcCCccEEE
Q 011240 97 -HHSL-----------PAWAGE------YG-------GWKLEKTIDYFMDFTRLVVDSVSDIVDYWV 138 (490)
Q Consensus 97 -H~dl-----------P~~l~~------~G-------Gw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~ 138 (490)
|+.. |.+... +. .+.++++.+.+.+=++.-+++|| |+-|=
T Consensus 338 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~--iDG~R 402 (726)
T PRK05402 338 AHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH--IDGLR 402 (726)
T ss_pred CCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC--CcEEE
Confidence 5521 111100 11 23467888888888888888876 45554
No 88
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=32.02 E-value=1.4e+02 Score=29.10 Aligned_cols=69 Identities=13% Similarity=0.258 Sum_probs=44.7
Q ss_pred cccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEE-EccCCCCcc
Q 011240 28 FWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVML-TLFHHSLPA 102 (490)
Q Consensus 28 ~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~Piv-TL~H~dlP~ 102 (490)
+.+.+++=+++++++|.+..++...+ .|..+ .........++..+.+.+.+.+.||...+ ++.|++.|.
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~---~~~~~---~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~ 151 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGK---RPAGV---SPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPG 151 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCC---CCCCC---CHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCC
Confidence 44566778999999999999864332 12110 01122344556778888889999999887 445665553
No 89
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=31.46 E-value=2.1e+02 Score=29.22 Aligned_cols=85 Identities=22% Similarity=0.141 Sum_probs=50.5
Q ss_pred HHHHhcCCCeEEeccc--cccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCCCCChh
Q 011240 37 KLAKDTGVSVFRLGID--WSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKLEK 114 (490)
Q Consensus 37 ~lmk~lGv~~yRfSIs--WsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw~n~~ 114 (490)
+.+++.|++.+-++.- -..-.|.- .|. ...+ ........|..|+++|++++|.+=-|.-.... .++.
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w--~g~-~~~~--~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~------~~~~ 87 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAW--GGS-YPLD--QGGWIKSDIAALRAAGGDVIVSFGGASGTPLA------TSCT 87 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccC--CCC-CCcc--cchhHHHHHHHHHHcCCeEEEEecCCCCCccc------cCcc
Confidence 5678899998886632 22212210 000 0111 01233568999999999999988555332111 1456
Q ss_pred hHHHHHHHHHHHHHHhcC
Q 011240 115 TIDYFMDFTRLVVDSVSD 132 (490)
Q Consensus 115 ~v~~F~~YA~~~f~~fgd 132 (490)
.++.|++....+.++||=
T Consensus 88 ~~~~~~~a~~~~i~~y~~ 105 (294)
T cd06543 88 SADQLAAAYQKVIDAYGL 105 (294)
T ss_pred cHHHHHHHHHHHHHHhCC
Confidence 778888887777788863
No 90
>PLN03153 hypothetical protein; Provisional
Probab=31.36 E-value=55 Score=36.17 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=42.0
Q ss_pred HHHHCC-CEEEEEccCCCCcccccccCCCCChhhHHHHHHHHH----HHHHHh--cCCccEEEEccCcchhccccccCCC
Q 011240 83 RVRSYG-MKVMLTLFHHSLPAWAGEYGGWKLEKTIDYFMDFTR----LVVDSV--SDIVDYWVTFNEPHVFCMLTYCAGT 155 (490)
Q Consensus 83 ~l~~~G-I~PivTL~H~dlP~~l~~~GGw~n~~~v~~F~~YA~----~~f~~f--gd~Vk~W~T~NEP~~~~~~gY~~G~ 155 (490)
.+++.| +.|+|+||||+.=.-+ +-+-...+.++.|..=|+ .++++. +|+...|..- ..+||.+-.
T Consensus 326 G~les~p~~P~vSlHH~~~~~p~--fP~~~~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fs------vSwGysV~~ 397 (537)
T PLN03153 326 GLLSSHPIAPFVSIHHVEAVDPF--YPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFS------ISLGYVVQV 397 (537)
T ss_pred hHhhcCCCCCceeeeeccccccc--cCCcchHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEE------EeccEEEEE
Confidence 445555 9999999999871111 111233456677765442 223444 6766777653 556898877
Q ss_pred CCCCC
Q 011240 156 WPGGN 160 (490)
Q Consensus 156 ~pPg~ 160 (490)
++.+.
T Consensus 398 y~~~~ 402 (537)
T PLN03153 398 FPSIV 402 (537)
T ss_pred ecCCC
Confidence 76543
No 91
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=31.34 E-value=2.1e+02 Score=29.02 Aligned_cols=105 Identities=15% Similarity=0.194 Sum_probs=65.2
Q ss_pred hHHHHHHHHhcCC--CeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCC---ccc---
Q 011240 32 PDIELKLAKDTGV--SVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSL---PAW--- 103 (490)
Q Consensus 32 ~~eDi~lmk~lGv--~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dl---P~~--- 103 (490)
.++-++.+++.|+ +++=+.+.|.+-.-.+ .=.+|++-.---+.+|++|+++|+++++.+.-+.. |..
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~-----~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~ 100 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWC-----DFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEA 100 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcce-----eeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHH
Confidence 3577888999994 4566777787432100 12344433333568999999999998887653322 211
Q ss_pred -----cc-c-------------cCC---CCChhhHHHHHHHHHHHHHHhcCCcc-EEEEccCcc
Q 011240 104 -----AG-E-------------YGG---WKLEKTIDYFMDFTRLVVDSVSDIVD-YWVTFNEPH 144 (490)
Q Consensus 104 -----l~-~-------------~GG---w~n~~~v~~F~~YA~~~f~~fgd~Vk-~W~T~NEP~ 144 (490)
+. + .++ +.||+..++|.+..+.+.+ .| |+ +|+=+||+.
T Consensus 101 ~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~~ 161 (308)
T cd06593 101 AEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGERI 161 (308)
T ss_pred HHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCCC
Confidence 10 0 012 5788999999888876554 45 44 466688873
No 92
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=31.11 E-value=2.4e+02 Score=28.94 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=63.3
Q ss_pred HHHHHHHHhcCCC--eEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCC-----cccc-
Q 011240 33 DIELKLAKDTGVS--VFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSL-----PAWA- 104 (490)
Q Consensus 33 ~eDi~lmk~lGv~--~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dl-----P~~l- 104 (490)
.+-++.+++.++. ++=+.+.|..-. + .=.+|.+-..--..+|+.|+++|++.++.+.-+-. |...
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~~~--~-----~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~ 99 (317)
T cd06600 27 VEVVDIMQKEGFPYDVVFLDIHYMDSY--R-----LFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLS 99 (317)
T ss_pred HHHHHHHHHcCCCcceEEEChhhhCCC--C-----ceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHH
Confidence 3445666666655 444444554211 0 11334333333457999999999998876643321 1110
Q ss_pred -c-------c-----------cC-----CCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchh
Q 011240 105 -G-------E-----------YG-----GWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVF 146 (490)
Q Consensus 105 -~-------~-----------~G-----Gw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~ 146 (490)
. . .| -|.||+.+++|.+..+.+....|-. -+|+=+|||..+
T Consensus 100 ~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvd-g~w~D~~Ep~~~ 164 (317)
T cd06600 100 GMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVD-GIWLDMNEPSDF 164 (317)
T ss_pred HHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCc-eEEeeCCCCccH
Confidence 0 0 01 3678999999998888776666543 478899999754
No 93
>PLN02784 alpha-amylase
Probab=30.61 E-value=1.2e+02 Score=35.87 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=44.6
Q ss_pred ccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChH--HHHHHHHHHHHHHHCCCEEEEEc
Q 011240 27 RFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFA--ALERYKWIINRVRSYGMKVMLTL 95 (490)
Q Consensus 27 ~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~--gl~~Y~~lId~l~~~GI~PivTL 95 (490)
.+|....+.++-+++||+++.=++=.-.-..+.|=....--.+|.. ..+=++.||++|+++||++|+.+
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688889999999999999998775433332221000000011111 13346899999999999999974
No 94
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=30.42 E-value=1.4e+02 Score=29.75 Aligned_cols=67 Identities=24% Similarity=0.252 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCCCCC
Q 011240 33 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKL 112 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw~n 112 (490)
.+|++.+++.|++..|+.++-|.+. -....++.+++.|+++.+++-.- +..
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~------------------~~~~~i~~ak~~G~~v~~~~~~~----------~~~- 138 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEAD------------------VSEQHIGAARKLGMDVVGFLMMS----------HMA- 138 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHH------------------HHHHHHHHHHHCCCeEEEEEEec----------cCC-
Confidence 6999999999999999988766442 12568999999999999988532 222
Q ss_pred hhhHHHHHHHHHHHHHHhc
Q 011240 113 EKTIDYFMDFTRLVVDSVS 131 (490)
Q Consensus 113 ~~~v~~F~~YA~~~f~~fg 131 (490)
..+.+.+.++.+. ..|
T Consensus 139 --~~~~~~~~~~~~~-~~G 154 (263)
T cd07943 139 --SPEELAEQAKLME-SYG 154 (263)
T ss_pred --CHHHHHHHHHHHH-HcC
Confidence 2366777777653 445
No 95
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=30.40 E-value=1.4e+02 Score=31.21 Aligned_cols=68 Identities=22% Similarity=0.232 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCCCCC
Q 011240 33 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKL 112 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw~n 112 (490)
.+|++.+.+.|++..|+...+++.. --.+.|+.+++.|++..+++..- .
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~~------------------~~~~~i~~ak~~G~~v~~~l~~a-------------~ 139 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEAD------------------VSEQHIGLARELGMDTVGFLMMS-------------H 139 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchHH------------------HHHHHHHHHHHCCCeEEEEEEec-------------c
Confidence 5899999999999999988665431 12578999999999999988642 1
Q ss_pred hhhHHHHHHHHHHHHHHhcC
Q 011240 113 EKTIDYFMDFTRLVVDSVSD 132 (490)
Q Consensus 113 ~~~v~~F~~YA~~~f~~fgd 132 (490)
....+.+.+.++.+ ..+|-
T Consensus 140 ~~~~e~l~~~a~~~-~~~Ga 158 (337)
T PRK08195 140 MAPPEKLAEQAKLM-ESYGA 158 (337)
T ss_pred CCCHHHHHHHHHHH-HhCCC
Confidence 23457788888876 45664
No 96
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=30.37 E-value=77 Score=31.73 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCCeEEecccccc-ccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEE
Q 011240 33 DIELKLAKDTGVSVFRLGIDWSR-IMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLT 94 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSIsWsR-I~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivT 94 (490)
+|.++.||++|++.+-++++-+. +.+.- .+.- ..+-+.+.++.++++||...++
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i-----~~~~---s~~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNI-----ISTH---TYDDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhc-----cCCC---CHHHHHHHHHHHHHcCCEEEEe
Confidence 79999999999999999998221 33321 1112 2456678899999999985544
No 97
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=29.50 E-value=26 Score=35.03 Aligned_cols=72 Identities=10% Similarity=0.064 Sum_probs=42.1
Q ss_pred HHHHHHHHCCCEEEEEccCCCCcccccccCCCCChhhHHHHHHHHHHHHHHhc------CCccEEEEccCcchhcccccc
Q 011240 79 WIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKLEKTIDYFMDFTRLVVDSVS------DIVDYWVTFNEPHVFCMLTYC 152 (490)
Q Consensus 79 ~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw~n~~~v~~F~~YA~~~f~~fg------d~Vk~W~T~NEP~~~~~~gY~ 152 (490)
+..-.+-++.+.|+|+|||||.=..+. -+....+.++.+..=|++--.++- |+-+.|. +-+.+||.
T Consensus 72 d~~G~~~a~~~~pl~SlHH~~~~~Pif--P~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~ws------vsVSwGYs 143 (255)
T PF04646_consen 72 DPSGFLEAHPLAPLVSLHHWDSVDPIF--PNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWS------VSVSWGYS 143 (255)
T ss_pred CcceeeecCCCCceeeeeehhhccccC--CCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEE------EEEEccEE
Confidence 343344556689999999998633332 355556677777764443333322 2334443 34557998
Q ss_pred CCCCCC
Q 011240 153 AGTWPG 158 (490)
Q Consensus 153 ~G~~pP 158 (490)
+-.++.
T Consensus 144 Vqvy~~ 149 (255)
T PF04646_consen 144 VQVYRG 149 (255)
T ss_pred EEEECC
Confidence 877653
No 98
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=29.22 E-value=1.8e+02 Score=28.38 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCCCCChhhHHHHHHHHHHHHHHhc
Q 011240 73 ALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKLEKTIDYFMDFTRLVVDSVS 131 (490)
Q Consensus 73 gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw~n~~~v~~F~~YA~~~f~~fg 131 (490)
.++...+.|..|++.|+++++++.-+.....+ ....+++..+.|++-...++++||
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~---~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF---ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc---cccCCHHHHHHHHHHHHHHHHHhC
Confidence 34566789999999999999999866544322 112344445555555555556665
No 99
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=28.83 E-value=2e+02 Score=28.87 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCCCCC
Q 011240 33 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKL 112 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw~n 112 (490)
+.+++++++.|++..|+.++=|-..-.. . .+.--++.++-..+.++.+++.|+++.++.-+| .+ +.
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~---~-~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~d-~~--- 146 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTE---A-LGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF------FD-GY--- 146 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHH---H-cCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------cc-cC---
Confidence 4689999999999999987655432211 0 011225668888899999999999998876665 11 11
Q ss_pred hhhHHHHHHHHHHHHH
Q 011240 113 EKTIDYFMDFTRLVVD 128 (490)
Q Consensus 113 ~~~v~~F~~YA~~~f~ 128 (490)
+...+.+.++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~~~ 162 (273)
T cd07941 147 KANPEYALATLKAAAE 162 (273)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 2235666777777644
No 100
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=28.63 E-value=1.2e+02 Score=32.90 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=42.9
Q ss_pred ccccChHHHHHHHHhcCCCeEEecccccc--------ccCCCCCC-C---CcCcCChH--HHHHHHHHHHHHHHCCCEEE
Q 011240 27 RFWSDPDIELKLAKDTGVSVFRLGIDWSR--------IMPAEPVN-G---LKETVNFA--ALERYKWIINRVRSYGMKVM 92 (490)
Q Consensus 27 ~~y~~~~eDi~lmk~lGv~~yRfSIsWsR--------I~P~~~~~-G---~~g~vn~~--gl~~Y~~lId~l~~~GI~Pi 92 (490)
+.|..-.+-++-+++||+++.=+|=...- --|..-.+ + ..|.+|.. ..+=.++||++|+++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 34555677899999999999987743221 11110000 0 00012211 12335799999999999999
Q ss_pred EEc--cCC
Q 011240 93 LTL--FHH 98 (490)
Q Consensus 93 vTL--~H~ 98 (490)
+.+ .|-
T Consensus 99 ~D~V~NH~ 106 (479)
T PRK09441 99 ADVVLNHK 106 (479)
T ss_pred EEECcccc
Confidence 975 464
No 101
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=28.47 E-value=2.6e+02 Score=28.67 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=66.3
Q ss_pred HHHHHHHHhcCCC-eEEecc-cccc-ccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCC
Q 011240 33 DIELKLAKDTGVS-VFRLGI-DWSR-IMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGG 109 (490)
Q Consensus 33 ~eDi~lmk~lGv~-~yRfSI-sWsR-I~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GG 109 (490)
++.+++|+++|++ ..-+++ |-+- ++-.. ..-..+ .+-+.+.++.++++||.+.+.+. +.+|.
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~----inKg~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~------- 181 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKS----INKGST---FEDFIRAAELARKYGAGVKAYLL-FKPPF------- 181 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHh----hCCCCC---HHHHHHHHHHHHHcCCcEEEEEE-ecCCC-------
Confidence 7999999999988 466665 2221 22000 001122 34567899999999998666654 34552
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchhccccccCCCCCC
Q 011240 110 WKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPG 158 (490)
Q Consensus 110 w~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~~~~gY~~G~~pP 158 (490)
..-.+.++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.|.|
T Consensus 182 ~se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 182 LSEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred CChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 1223677888888887764 45777766665566653333345566643
No 102
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=28.03 E-value=1.2e+02 Score=33.69 Aligned_cols=67 Identities=16% Similarity=0.321 Sum_probs=40.5
Q ss_pred ccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCc----CcCCh--HHHHHHHHHHHHHHHCCCEEEEEcc
Q 011240 27 RFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLK----ETVNF--AALERYKWIINRVRSYGMKVMLTLF 96 (490)
Q Consensus 27 ~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~----g~vn~--~gl~~Y~~lId~l~~~GI~PivTL~ 96 (490)
+=+.-..+.++-+++||+++.=++=-+.. |... .|-. -.+|+ -..+=++.||++++++||++|+.+.
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~-~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVD-NGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCC-CCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 33445568899999999999977632211 1100 0000 00111 0123468999999999999999764
No 103
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=27.98 E-value=1.7e+02 Score=30.42 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCCCCC
Q 011240 33 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKL 112 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw~n 112 (490)
.+|++.+.+.|++..|+....+... --.+.|+.+++.|++..+++..- .
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~d------------------~~~~~i~~ak~~G~~v~~~l~~s-------------~ 138 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEAD------------------VSEQHIGMARELGMDTVGFLMMS-------------H 138 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchHH------------------HHHHHHHHHHHcCCeEEEEEEcc-------------c
Confidence 6899999999999999887654331 12478999999999999887531 1
Q ss_pred hhhHHHHHHHHHHHHHHhcC
Q 011240 113 EKTIDYFMDFTRLVVDSVSD 132 (490)
Q Consensus 113 ~~~v~~F~~YA~~~f~~fgd 132 (490)
....+.+.+.++.+ ..+|-
T Consensus 139 ~~~~e~l~~~a~~~-~~~Ga 157 (333)
T TIGR03217 139 MTPPEKLAEQAKLM-ESYGA 157 (333)
T ss_pred CCCHHHHHHHHHHH-HhcCC
Confidence 23457888888875 45664
No 104
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=27.19 E-value=2.1e+02 Score=28.77 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=61.5
Q ss_pred ChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccC-CCCcccccccCC
Q 011240 31 DPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFH-HSLPAWAGEYGG 109 (490)
Q Consensus 31 ~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H-~dlP~~l~~~GG 109 (490)
.-.+|++.+.+.|++.+++.++=|.+.-..- -+.=-++.++...+.+..++++|+++.+++-. |+.|. +|
T Consensus 74 ~~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~----~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~-----~~ 144 (274)
T cd07938 74 PNLRGAERALAAGVDEVAVFVSASETFSQKN----INCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY-----EG 144 (274)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHH----cCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC-----CC
Confidence 3478999999999999999987665422210 01112566788889999999999999988763 55552 22
Q ss_pred CCChhhHHHHHHHHHHHHHHhc
Q 011240 110 WKLEKTIDYFMDFTRLVVDSVS 131 (490)
Q Consensus 110 w~n~~~v~~F~~YA~~~f~~fg 131 (490)
+-..+.+.++++.+.+ .|
T Consensus 145 ---~~~~~~~~~~~~~~~~-~G 162 (274)
T cd07938 145 ---EVPPERVAEVAERLLD-LG 162 (274)
T ss_pred ---CCCHHHHHHHHHHHHH-cC
Confidence 2346778888887654 55
No 105
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.75 E-value=1.8e+02 Score=29.86 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCCC--eEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCC---CCccc----
Q 011240 33 DIELKLAKDTGVS--VFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHH---SLPAW---- 103 (490)
Q Consensus 33 ~eDi~lmk~lGv~--~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~---dlP~~---- 103 (490)
.+-++.+++.|+. ++=+.+.|.-.......-| .=.+|.+-..--+.+|+.|+++|++.++.+.-+ +.|..
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~-~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~ 105 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG-NLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAV 105 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCcee-eeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHH
Confidence 4556667777764 5555566744322110000 012333322233579999999999999887655 33331
Q ss_pred -----ccc--------------cC---CCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchhc
Q 011240 104 -----AGE--------------YG---GWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFC 147 (490)
Q Consensus 104 -----l~~--------------~G---Gw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~~ 147 (490)
+.+ .+ -|.||+..++|.+..+.+ ...|-. -+|+=+|||.++.
T Consensus 106 ~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~Gvd-g~w~D~~Ep~~~~ 169 (317)
T cd06598 106 KAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQGVT-GWWGDLGEPEVHP 169 (317)
T ss_pred hCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCCcc-EEEecCCCccccC
Confidence 100 01 256899999998877765 334432 3588999997543
No 106
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=26.58 E-value=3e+02 Score=28.67 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=50.3
Q ss_pred HHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcc
Q 011240 34 IELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPA 102 (490)
Q Consensus 34 eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~ 102 (490)
-+++.+|++|.++..|=+=|. |++ .-.+|..=.+|-.++.++|.++||-=++-+.-+|.+.
T Consensus 110 ~s~~rike~GadavK~Llyy~---pD~-----~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~ 170 (325)
T TIGR01232 110 WSAKRLKEQGANAVKFLLYYD---VDD-----AEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI 170 (325)
T ss_pred ccHHHHHHhCCCeEEEEEEeC---CCC-----ChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC
Confidence 358899999999999988774 332 1468888899999999999999999999888876665
No 107
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=26.06 E-value=2.9e+02 Score=32.28 Aligned_cols=105 Identities=18% Similarity=0.336 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCC--eEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEcc---CCCCc------
Q 011240 33 DIELKLAKDTGVS--VFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF---HHSLP------ 101 (490)
Q Consensus 33 ~eDi~lmk~lGv~--~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~---H~dlP------ 101 (490)
++-++.+.++|+. ..=..|.|=-=.- +=++|..+.-...++++.|+++|++-++++. +=+..
T Consensus 314 ~dvv~~~~~agiPld~~~~DiDyMd~yk-------DFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~ 386 (805)
T KOG1065|consen 314 RDVVENYRAAGIPLDVIVIDIDYMDGYK-------DFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDR 386 (805)
T ss_pred HHHHHHHHHcCCCcceeeeehhhhhccc-------ceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhh
Confidence 4556777788877 5555555532222 1356666666677899999999999999886 22222
Q ss_pred -----ccccc-----------cCC------CCChhhHHHHHHHHHHHHHHhcCCcc---EEEEccCcchhcc
Q 011240 102 -----AWAGE-----------YGG------WKLEKTIDYFMDFTRLVVDSVSDIVD---YWVTFNEPHVFCM 148 (490)
Q Consensus 102 -----~~l~~-----------~GG------w~n~~~v~~F~~YA~~~f~~fgd~Vk---~W~T~NEP~~~~~ 148 (490)
.++.+ .-| ++|+.++.++.+ .+++|.+.|. +|+-.|||..++.
T Consensus 387 g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~----~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 387 GVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLD----ELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred hhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHH----HHHhhcccCCccceEEECCCcccCCC
Confidence 01111 112 677877777765 3447777775 7999999987764
No 108
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=26.01 E-value=2.7e+02 Score=31.41 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCCCCC
Q 011240 33 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKL 112 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw~n 112 (490)
++|++.+.+.|++.+|+..+.+.+ +--...|+.++++|+...+++.+-+.|.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~------------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~---------- 145 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP------------------RNLQAAIQAAKKHGAHAQGTISYTTSPV---------- 145 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH------------------HHHHHHHHHHHHcCCEEEEEEEeccCCC----------
Confidence 567899999999999998766543 1234678899999999998887655552
Q ss_pred hhhHHHHHHHHHHHHHHhc
Q 011240 113 EKTIDYFMDFTRLVVDSVS 131 (490)
Q Consensus 113 ~~~v~~F~~YA~~~f~~fg 131 (490)
...+.+.+.|+.+.+ .|
T Consensus 146 -~~~~~~~~~~~~~~~-~G 162 (582)
T TIGR01108 146 -HTLETYLDLAEELLE-MG 162 (582)
T ss_pred -CCHHHHHHHHHHHHH-cC
Confidence 356777777777644 44
No 109
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=25.19 E-value=4e+02 Score=27.36 Aligned_cols=98 Identities=21% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCccEEEEccCcchhccccccCCCCCCCCCChhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 011240 122 FTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFNQAMHWMAIAHSKAYDYIHAKSTST 201 (490)
Q Consensus 122 YA~~~f~~fgd~Vk~W~T~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~~a~h~ll~AHa~A~~~ir~~~~~~ 201 (490)
||.+|...=| |+-+++=-|-.-++..--..+.|| +...+..|+ +.+-.++ ..
T Consensus 10 YA~La~~agg--VdaF~IGSEl~gLT~iR~~~~~fP------------------aV~~l~~LA---a~VR~il-----G~ 61 (299)
T PF13547_consen 10 YAHLAAAAGG--VDAFCIGSELRGLTRIRDGAGSFP------------------AVEALRALA---ADVRAIL-----GP 61 (299)
T ss_pred HHHHHHhcCC--CcEEEEchhhhhheeecCCCCCCc------------------HHHHHHHHH---HHHHHHh-----CC
Q ss_pred CCcEEEEeeccccCCCChhcHHHHHHHhhccCCcccccc--CCCcceEEeecCCC
Q 011240 202 KSKVGVAHHVSFMRPYGLFDVTAVTLANTLTTFPYVDSI--SDRLDFIGINYYGQ 254 (490)
Q Consensus 202 ~~~VGi~~~~~~~~P~~~~D~~aa~~~~~~~~~p~~~~i--~~~~DFiGiNyYt~ 254 (490)
..+|+.+-+.+-+.-+.+.| ..-..+..+|.+ ...+|||||+.|.+
T Consensus 62 ~~kitYAADWsEY~~~~p~d-------g~gd~~f~LDpLWa~~~IDfIGID~Y~P 109 (299)
T PF13547_consen 62 GTKITYAADWSEYFGYQPAD-------GSGDVYFHLDPLWADPNIDFIGIDNYFP 109 (299)
T ss_pred CceEEEeccCHHhcCcCCCC-------CCCcccccCcccccCCcCCEEEeecccc
No 110
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=25.12 E-value=6.8e+02 Score=24.75 Aligned_cols=90 Identities=13% Similarity=0.201 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCC--eEEeccccccccCCCCCCCCcC--cCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccC
Q 011240 33 DIELKLAKDTGVS--VFRLGIDWSRIMPAEPVNGLKE--TVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYG 108 (490)
Q Consensus 33 ~eDi~lmk~lGv~--~yRfSIsWsRI~P~~~~~G~~g--~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~G 108 (490)
.+-++.+++.|+. ++=+.+.|..-.- .- .+|.+-..--+++|+.|+++|++.++.+.
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~~~~~~~-------~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~------------ 87 (265)
T cd06589 27 LEVIDGMRENDIPLDGFVLDDDYTDGYG-------DFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID------------ 87 (265)
T ss_pred HHHHHHHHHcCCCccEEEECcccccCCc-------eeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC------------
Confidence 4556677776655 5666666653211 12 34443333346899999999999987553
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchh
Q 011240 109 GWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVF 146 (490)
Q Consensus 109 Gw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~ 146 (490)
|-+.++|.+..+......|- --+|+=+|||..+
T Consensus 88 ----P~v~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~~~ 120 (265)
T cd06589 88 ----PYIREWWAEVVKKLLVSLGV-DGFWTDMGEPSPG 120 (265)
T ss_pred ----hhHHHHHHHHHHHhhccCCC-CEEeccCCCCCcC
Confidence 22377887766655444443 2468899999765
No 111
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=25.03 E-value=97 Score=31.20 Aligned_cols=24 Identities=42% Similarity=0.829 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhCCCCCCEEEeecCCCC
Q 011240 281 GLFRVLHQFHERYKHLNLPFIITENGVSD 309 (490)
Q Consensus 281 gL~~~L~~i~~rY~~~~~PI~ITENG~~~ 309 (490)
||..++.. .++ +.|++|||.|+-.
T Consensus 185 gl~g~~~k--~~~---g~P~lLTEHGIY~ 208 (268)
T PF11997_consen 185 GLLGALAK--YRY---GRPFLLTEHGIYT 208 (268)
T ss_pred HHHHHHHH--HHh---CCCEEEecCCccH
Confidence 55555433 356 4899999999953
No 112
>PRK09505 malS alpha-amylase; Reviewed
Probab=24.85 E-value=1.8e+02 Score=33.45 Aligned_cols=65 Identities=11% Similarity=0.265 Sum_probs=39.2
Q ss_pred hHHHHHHHHhcCCCeEEecccccccc-----------CCCCCCCC----cCcCChH--HHHHHHHHHHHHHHCCCEEEEE
Q 011240 32 PDIELKLAKDTGVSVFRLGIDWSRIM-----------PAEPVNGL----KETVNFA--ALERYKWIINRVRSYGMKVMLT 94 (490)
Q Consensus 32 ~~eDi~lmk~lGv~~yRfSIsWsRI~-----------P~~~~~G~----~g~vn~~--gl~~Y~~lId~l~~~GI~PivT 94 (490)
..+-++-+++||+++.=+|=-...+. |.-.-.|- -..+|+. ..+=++.||++++++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45668899999999998874333221 00000000 0011211 2345689999999999999997
Q ss_pred cc
Q 011240 95 LF 96 (490)
Q Consensus 95 L~ 96 (490)
+.
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 54
No 113
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=24.61 E-value=3.4e+02 Score=27.77 Aligned_cols=109 Identities=9% Similarity=0.066 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCCeEEeccc--cccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCc---cc----
Q 011240 33 DIELKLAKDTGVSVFRLGID--WSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLP---AW---- 103 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSIs--WsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP---~~---- 103 (490)
.+-++.+++.|+..==+-|+ |..=.-.+ .=.+|.+-..--..+|+.|+++|++.++.+.-+-.+ ..
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~-----~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~ 101 (319)
T cd06591 27 LDVAKEYRKRGIPLDVIVQDWFYWPKQGWG-----EWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMD 101 (319)
T ss_pred HHHHHHHHHhCCCccEEEEechhhcCCCce-----eEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHH
Confidence 44456666665554334443 32100000 012344333334689999999999998866433221 11
Q ss_pred ----c-cc-c-----------CC---CCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchhc
Q 011240 104 ----A-GE-Y-----------GG---WKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFC 147 (490)
Q Consensus 104 ----l-~~-~-----------GG---w~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~~ 147 (490)
+ .. . ++ |.||+.+++|.+..+..+...|- --+|+=+|||..+.
T Consensus 102 ~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~Ep~~~~ 164 (319)
T cd06591 102 EKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGV-DAWWLDAAEPEYSV 164 (319)
T ss_pred HCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCC-cEEEecCCCCCccC
Confidence 0 00 0 12 66888888887766555555553 34789999998654
No 114
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=24.58 E-value=7.1e+02 Score=26.40 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=49.0
Q ss_pred cccccccChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEE-EEccCCCCcc
Q 011240 24 ERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVM-LTLFHHSLPA 102 (490)
Q Consensus 24 ~~~~~y~~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~Pi-vTL~H~dlP~ 102 (490)
.+++-+-...+-++.++++|++++=| ....+.|.+ -...+.. ....++-+.|.++||++. +|..-+..|.
T Consensus 26 ~~~~~~~~~~e~i~~la~~GfdgVE~--~~~dl~P~~------~~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~ 96 (382)
T TIGR02631 26 DATRTALDPVEAVHKLAELGAYGVTF--HDDDLIPFG------APPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPV 96 (382)
T ss_pred CCCCCCcCHHHHHHHHHHhCCCEEEe--cccccCCCC------CChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCcc
Confidence 35567778899999999999998854 334456642 1111111 235678888999999954 4543222232
Q ss_pred cccccCCCCCh
Q 011240 103 WAGEYGGWKLE 113 (490)
Q Consensus 103 ~l~~~GGw~n~ 113 (490)
+ ..||+.++
T Consensus 97 ~--~~g~las~ 105 (382)
T TIGR02631 97 F--KDGGFTSN 105 (382)
T ss_pred c--cCCCCCCC
Confidence 3 23678775
No 115
>PLN02998 beta-glucosidase
Probab=24.35 E-value=34 Score=37.70 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=24.7
Q ss_pred ccCCCCCCCCCCCCCCCccce----eeeecCC--CCccchh
Q 011240 424 YAGGLDEPTQRPYIQRDWRFG----HYQMEGL--QDPLSRL 458 (490)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~ 458 (490)
.......++.+..|+.||.|| +||+||. .|++.+-
T Consensus 18 ~~~~~~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~s 58 (497)
T PLN02998 18 LTAVSSLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPS 58 (497)
T ss_pred ccccccccCccccCCCCCEEeeechHHHhCCCcCCCCCccc
Confidence 344444556678899999999 9999994 4554443
No 116
>PRK03705 glycogen debranching enzyme; Provisional
Probab=24.01 E-value=1.7e+02 Score=33.45 Aligned_cols=23 Identities=17% Similarity=0.502 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEcc
Q 011240 74 LERYKWIINRVRSYGMKVMLTLF 96 (490)
Q Consensus 74 l~~Y~~lId~l~~~GI~PivTL~ 96 (490)
++=++.||++|.++||++|+.+.
T Consensus 241 ~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 241 LDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEc
Confidence 45578999999999999999754
No 117
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=23.91 E-value=1.7e+02 Score=32.48 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=40.2
Q ss_pred ccccChHHHHHHHHhcCCCeEEeccccc--------------cccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEE
Q 011240 27 RFWSDPDIELKLAKDTGVSVFRLGIDWS--------------RIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVM 92 (490)
Q Consensus 27 ~~y~~~~eDi~lmk~lGv~~yRfSIsWs--------------RI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~Pi 92 (490)
+-+.-..+-++-+++||+++.=++=-.. +|.|.- | ..+=.+.||++|+++||++|
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~------G-----t~~~~~~lv~~ah~~gi~vi 92 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLF------G-----TMADFEELVSEAKKRNIKIM 92 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCccc------C-----CHHHHHHHHHHHHHCCCEEE
Confidence 4455566778999999999987652221 122210 1 12345789999999999999
Q ss_pred EEcc
Q 011240 93 LTLF 96 (490)
Q Consensus 93 vTL~ 96 (490)
+.+.
T Consensus 93 lD~v 96 (543)
T TIGR02403 93 LDMV 96 (543)
T ss_pred EEEC
Confidence 9864
No 118
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=23.54 E-value=1.6e+02 Score=29.78 Aligned_cols=95 Identities=7% Similarity=0.095 Sum_probs=60.8
Q ss_pred ccccccChHHH-HHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCC---
Q 011240 25 RLRFWSDPDIE-LKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSL--- 100 (490)
Q Consensus 25 ~~~~y~~~~eD-i~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dl--- 100 (490)
...||.-|.++ ++.+++.+-+-=-+|..|-.|-|++.+ .+..+ .++++.++++|++.++++.-|+-
T Consensus 4 ~~g~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g~~---~~~~~-------~~~~~~a~~~~~kv~~~i~~~~~~~~ 73 (313)
T cd02874 4 VLGYYTPRNGSDYESLRANAPYLTYIAPFWYGVDADGTL---TGLPD-------ERLIEAAKRRGVKPLLVITNLTNGNF 73 (313)
T ss_pred EEEEEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCCCC---CCCCC-------HHHHHHHHHCCCeEEEEEecCCCCCC
Confidence 45677776665 788888877777888999999887521 22222 47899999999999999977641
Q ss_pred -cccccccCCCCChhhHHHHHHHHHHHHHHhc
Q 011240 101 -PAWAGEYGGWKLEKTIDYFMDFTRLVVDSVS 131 (490)
Q Consensus 101 -P~~l~~~GGw~n~~~v~~F~~YA~~~f~~fg 131 (490)
+..+. .--.+++..+.|++=.-..++++|
T Consensus 74 ~~~~~~--~~l~~~~~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 74 DSELAH--AVLSNPEARQRLINNILALAKKYG 103 (313)
T ss_pred CHHHHH--HHhcCHHHHHHHHHHHHHHHHHhC
Confidence 00000 001245555566555555555554
No 119
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=23.53 E-value=2.4e+02 Score=29.77 Aligned_cols=84 Identities=15% Similarity=0.226 Sum_probs=57.8
Q ss_pred cCh-HHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccC
Q 011240 30 SDP-DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYG 108 (490)
Q Consensus 30 ~~~-~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~G 108 (490)
.+. ++|++.+.+.|++..+++++-|.+.-..- -+.--++.++-..+.|+.+++.|+++.++.- .+
T Consensus 74 ~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~----~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e----------d~ 139 (378)
T PRK11858 74 NRAVKSDIDASIDCGVDAVHIFIATSDIHIKHK----LKKTREEVLERMVEAVEYAKDHGLYVSFSAE----------DA 139 (378)
T ss_pred cccCHHHHHHHHhCCcCEEEEEEcCCHHHHHHH----hCCCHHHHHHHHHHHHHHHHHCCCeEEEEec----------cC
Confidence 443 88999999999999999998777533210 0122356788888999999999999888631 12
Q ss_pred CCCChhhHHHHHHHHHHHHHHhc
Q 011240 109 GWKLEKTIDYFMDFTRLVVDSVS 131 (490)
Q Consensus 109 Gw~n~~~v~~F~~YA~~~f~~fg 131 (490)
+ +...+...++++.+. ..|
T Consensus 140 ~---r~~~~~l~~~~~~~~-~~G 158 (378)
T PRK11858 140 S---RTDLDFLIEFAKAAE-EAG 158 (378)
T ss_pred C---CCCHHHHHHHHHHHH-hCC
Confidence 2 233566666776653 355
No 120
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=23.48 E-value=2.1e+02 Score=31.91 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=36.7
Q ss_pred hHHHHHHHHhcCCCeEEec-c-------cc-------ccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEcc
Q 011240 32 PDIELKLAKDTGVSVFRLG-I-------DW-------SRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF 96 (490)
Q Consensus 32 ~~eDi~lmk~lGv~~yRfS-I-------sW-------sRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~ 96 (490)
..+-++-+|+||+++.-+. | .| -.|.|. -|. .+=.++||++|.++||++|+.+.
T Consensus 113 i~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~------~G~-----~~e~k~lV~~aH~~Gi~VilD~V 181 (542)
T TIGR02402 113 AIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNA------YGG-----PDDLKALVDAAHGLGLGVILDVV 181 (542)
T ss_pred HHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccc------cCC-----HHHHHHHHHHHHHCCCEEEEEEc
Confidence 3456899999999998765 2 12 111111 122 33467999999999999999754
No 121
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=23.46 E-value=1.8e+02 Score=30.39 Aligned_cols=95 Identities=17% Similarity=0.299 Sum_probs=51.6
Q ss_pred hHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEE-EEccCCCCcccccccCCC
Q 011240 32 PDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVM-LTLFHHSLPAWAGEYGGW 110 (490)
Q Consensus 32 ~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~Pi-vTL~H~dlP~~l~~~GGw 110 (490)
=++.++.|+++|++.+-+|+ --.-++- +.. .|... ..+-+.+.|+.+++.|+..+ +.| =+++|.
T Consensus 98 t~e~l~~l~~~G~~rvsiGv--qS~~d~~-L~~-l~R~~--~~~~~~~ai~~l~~~g~~~v~~dl-i~GlPg-------- 162 (374)
T PRK05799 98 TEEKLKILKSMGVNRLSIGL--QAWQNSL-LKY-LGRIH--TFEEFLENYKLARKLGFNNINVDL-MFGLPN-------- 162 (374)
T ss_pred CHHHHHHHHHcCCCEEEEEC--ccCCHHH-HHH-cCCCC--CHHHHHHHHHHHHHcCCCcEEEEe-ecCCCC--------
Confidence 35889999999999555554 3332221 000 01111 13345678999999999754 444 456664
Q ss_pred CChhhHHHHHHHHHHHHHHhc-CCccEEEEccCcch
Q 011240 111 KLEKTIDYFMDFTRLVVDSVS-DIVDYWVTFNEPHV 145 (490)
Q Consensus 111 ~n~~~v~~F~~YA~~~f~~fg-d~Vk~W~T~NEP~~ 145 (490)
++.+.|.+-.+.+.+ ++ +.|..+.-.-+|+.
T Consensus 163 ---qt~e~~~~~l~~~~~-l~~~~is~y~l~~~pgT 194 (374)
T PRK05799 163 ---QTLEDWKETLEKVVE-LNPEHISCYSLIIEEGT 194 (374)
T ss_pred ---CCHHHHHHHHHHHHh-cCCCEEEEeccEecCCC
Confidence 234555555555543 34 33433333335553
No 122
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.32 E-value=2.5e+02 Score=28.73 Aligned_cols=109 Identities=8% Similarity=0.090 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCCCeEEecc--ccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCc---ccc--c
Q 011240 33 DIELKLAKDTGVSVFRLGI--DWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLP---AWA--G 105 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSI--sWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP---~~l--~ 105 (490)
.+-++.+++.|+..==+-| .|....-.. -..-.+|.+-..--+.||++|+++|++.++.+.-+-.| ..- .
T Consensus 32 ~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~---~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~ 108 (317)
T cd06599 32 LEFIDKCREHDIPCDSFHLSSGYTSIEGGK---RYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELK 108 (317)
T ss_pred HHHHHHHHHcCCCeeEEEEeccccccCCCc---eeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHH
Confidence 4445677777765443333 343320000 00012232222223589999999999999877655332 110 0
Q ss_pred c--------cC----------------CCCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcch
Q 011240 106 E--------YG----------------GWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHV 145 (490)
Q Consensus 106 ~--------~G----------------Gw~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~ 145 (490)
+ .| -+.|++..++|.+..+..+...|-. -+|+=+|||.+
T Consensus 109 ~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvd-g~w~D~~E~~~ 171 (317)
T cd06599 109 EAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGID-STWNDNNEYEI 171 (317)
T ss_pred HCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCc-EEEecCCCCcc
Confidence 0 01 1468999999988776665555532 47888999964
No 123
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=22.86 E-value=64 Score=25.33 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=31.8
Q ss_pred ccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCC
Q 011240 54 SRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHS 99 (490)
Q Consensus 54 sRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~d 99 (490)
|++.|.+ +.=-+++++-.-+++..|-++|| +++.||+-+
T Consensus 19 s~l~p~~------~~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPKE------GADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCccc------ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 5777874 34467889999999999999999 999998753
No 124
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=22.15 E-value=2.2e+02 Score=29.70 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=40.5
Q ss_pred hHHHHHHHHhcCCCeEEecc-ccc-cccCCCCCCCCcCc-CChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcc
Q 011240 32 PDIELKLAKDTGVSVFRLGI-DWS-RIMPAEPVNGLKET-VNFAALERYKWIINRVRSYGMKVMLTLFHHSLPA 102 (490)
Q Consensus 32 ~~eDi~lmk~lGv~~yRfSI-sWs-RI~P~~~~~G~~g~-vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~ 102 (490)
=++.++.|+++|++.+.+|| |-+ +++-.- |. -+ .+-+.+.|+.+++.|+.++-.-+=+++|.
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~l------gR~~~---~~~~~~ai~~l~~~G~~~v~~dli~GlPg 163 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLFL------GRQHS---AKNIAPAIETALKSGIENISLDLMYGLPL 163 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHHh------CCCCC---HHHHHHHHHHHHHcCCCeEEEeccCCCCC
Confidence 36889999999999777776 343 233221 11 12 34456789999999998664433466774
No 125
>PRK12677 xylose isomerase; Provisional
Probab=22.08 E-value=8.2e+02 Score=25.96 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=46.0
Q ss_pred ChHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEE-EEccCCCCcccccccCC
Q 011240 31 DPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVM-LTLFHHSLPAWAGEYGG 109 (490)
Q Consensus 31 ~~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~Pi-vTL~H~dlP~~l~~~GG 109 (490)
..+|-++.++++|+++.=|.. ..+.|.. .-..+--....++-+.+.++||+.. +|...|..|.+ ..|+
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~--~~l~p~~-------~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~--~~g~ 100 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHD--DDLVPFG-------ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF--KDGA 100 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecc--cccCCCC-------CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc--cCCc
Confidence 578999999999999886632 2344532 1111111235678888889999955 66655555543 3478
Q ss_pred CCCh
Q 011240 110 WKLE 113 (490)
Q Consensus 110 w~n~ 113 (490)
+.++
T Consensus 101 lts~ 104 (384)
T PRK12677 101 FTSN 104 (384)
T ss_pred CCCC
Confidence 8874
No 126
>PLN02389 biotin synthase
Probab=21.97 E-value=1.9e+02 Score=30.67 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=41.7
Q ss_pred ChHHHHHHHHhcCCCeEEecccccc-ccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEc
Q 011240 31 DPDIELKLAKDTGVSVFRLGIDWSR-IMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTL 95 (490)
Q Consensus 31 ~~~eDi~lmk~lGv~~yRfSIsWsR-I~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL 95 (490)
.-+|.++.||++|++.|-.+++=++ ++|.- ...- ..+.+-+.++.+++.||++..++
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i-----~~~~---s~e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNV-----ITTR---SYDDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCc-----CCCC---CHHHHHHHHHHHHHcCCeEeEEE
Confidence 5579999999999999999886333 55531 0111 24566789999999999887664
No 127
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=21.83 E-value=2.8e+02 Score=27.55 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=52.8
Q ss_pred HHHHHHHHhcC----CCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccC
Q 011240 33 DIELKLAKDTG----VSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYG 108 (490)
Q Consensus 33 ~eDi~lmk~lG----v~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~G 108 (490)
.+|++++.+.| ++..|+.++.|-+.-..- -+.=-.+.++-....+..+++.|++..+++ |. +
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~----~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~-----~~-----~ 137 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYK----LKKTREEVLERAVEAVEYAKSHGLDVEFSA-----ED-----A 137 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHH----hCCCHHHHHHHHHHHHHHHHHcCCeEEEee-----ec-----C
Confidence 79999999999 999999877665532110 011112456677789999999999876443 21 1
Q ss_pred CCCChhhHHHHHHHHHHHHHHhc
Q 011240 109 GWKLEKTIDYFMDFTRLVVDSVS 131 (490)
Q Consensus 109 Gw~n~~~v~~F~~YA~~~f~~fg 131 (490)
+ +...+.+.+.++.+. .+|
T Consensus 138 ~---~~~~~~~~~~~~~~~-~~G 156 (268)
T cd07940 138 T---RTDLDFLIEVVEAAI-EAG 156 (268)
T ss_pred C---CCCHHHHHHHHHHHH-HcC
Confidence 2 234567777777764 355
No 128
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=21.13 E-value=2.4e+02 Score=30.48 Aligned_cols=60 Identities=23% Similarity=0.349 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCCeEEecc-cccc-ccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCc
Q 011240 33 DIELKLAKDTGVSVFRLGI-DWSR-IMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLP 101 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSI-sWsR-I~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP 101 (490)
++.+++|+++|++.+-+++ |-+. ++-.- ....+ ++.+.+.+..|+++||.+.+++. +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~-----~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNI-----KKGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHh-----cCCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 6789999999999988888 4432 22210 01123 34567899999999999887765 2455
No 129
>PLN02849 beta-glucosidase
Probab=20.86 E-value=47 Score=36.66 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=20.7
Q ss_pred CCCCCCCCCCccce----eeeecCCC--Cccch
Q 011240 431 PTQRPYIQRDWRFG----HYQMEGLQ--DPLSR 457 (490)
Q Consensus 431 ~~~~~~~~~~~~~~----~~~~~~~~--~~~~~ 457 (490)
++.++.++.||.+| +||+||.. |++.+
T Consensus 24 ~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~ 56 (503)
T PLN02849 24 DYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKP 56 (503)
T ss_pred CCccccCCCCCEEEeechhhhhcCCcCCCCCcC
Confidence 45577899999999 99999954 55444
No 130
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=20.72 E-value=3.5e+02 Score=27.43 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=47.2
Q ss_pred hHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEc
Q 011240 32 PDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTL 95 (490)
Q Consensus 32 ~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL 95 (490)
-.+|++.+.+.|++..-+.++=|...-... -+.=-++.++.+.+++..++++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~----~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKK----LKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHH----hCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 489999999999999888887665544310 122246778999999999999999999888
No 131
>PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins.
Probab=20.65 E-value=1.7e+02 Score=28.58 Aligned_cols=86 Identities=20% Similarity=0.325 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhCCCCCCEEEeecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCeeEEEEEecccccCCcCCCCCccceEE
Q 011240 283 FRVLHQFHERYKHLNLPFIITENGVSDETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVA 362 (490)
Q Consensus 283 ~~~L~~i~~rY~~~~~PI~ITENG~~~~~D~~Ri~yl~~hL~~v~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~rFGL~~ 362 (490)
..+|..+.+-..+ ..|.+||=||-+- =+.+|. ++|+..||++-.|+ . +.+..|. .|..||..-|
T Consensus 38 ~~lL~~F~~~~~~-~~p~LVs~NG~~F-----DlP~L~------~Ral~~gi~~p~~~--~-~~~k~We-nY~~Ry~~~H 101 (209)
T PF10108_consen 38 KELLQDFFDLVEK-YNPQLVSFNGRGF-----DLPVLC------RRALIHGISAPRYL--D-IGNKPWE-NYRNRYSERH 101 (209)
T ss_pred HHHHHHHHHHHHh-CCCeEEecCCccC-----CHHHHH------HHHHHhCCCCchhh--h-cCCCCcc-ccccccCccc
Confidence 4555555544433 2589999999872 345554 58889999987643 3 3458888 5999999889
Q ss_pred EcCCCC---ccccccchHHHHHHHH
Q 011240 363 VDRANN---LARIPRPSYHLFTKVV 384 (490)
Q Consensus 363 VD~~~~---~~R~pK~Sa~~y~~ii 384 (490)
+|.-+. ....-+.|-..+..+.
T Consensus 102 ~DLmd~l~~~g~~~~~sLd~la~~l 126 (209)
T PF10108_consen 102 LDLMDLLSFYGAKARTSLDELAALL 126 (209)
T ss_pred ccHHHHHhccCccccCCHHHHHHHc
Confidence 985321 1133456666666654
No 132
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=20.61 E-value=5.9e+02 Score=25.50 Aligned_cols=70 Identities=16% Similarity=0.307 Sum_probs=49.1
Q ss_pred hHHHHHHHHhcCCCeEEeccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCcccccccCCCC
Q 011240 32 PDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWK 111 (490)
Q Consensus 32 ~~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~dlP~~l~~~GGw~ 111 (490)
-++|+++..+.|++..|+++..+.+ +--...++.+++.|+++.+++.--+ +
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~~------------------~~~~~~i~~ak~~G~~v~~~i~~~~--------~--- 143 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALNDV------------------RNLEVAIKAVKKAGKHVEGAICYTG--------S--- 143 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCChH------------------HHHHHHHHHHHHCCCeEEEEEEecC--------C---
Confidence 5889999999999999998765443 2335789999999999887662111 1
Q ss_pred ChhhHHHHHHHHHHHHHHhc
Q 011240 112 LEKTIDYFMDFTRLVVDSVS 131 (490)
Q Consensus 112 n~~~v~~F~~YA~~~f~~fg 131 (490)
.+...+.+.++++.+.+ .|
T Consensus 144 ~~~~~~~~~~~~~~~~~-~G 162 (275)
T cd07937 144 PVHTLEYYVKLAKELED-MG 162 (275)
T ss_pred CCCCHHHHHHHHHHHHH-cC
Confidence 23345777777777644 45
No 133
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=20.50 E-value=4.4e+02 Score=28.06 Aligned_cols=107 Identities=17% Similarity=0.284 Sum_probs=65.3
Q ss_pred hHHHHHHHHhcCCCeEE--eccccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEccCC---CCc---c-
Q 011240 32 PDIELKLAKDTGVSVFR--LGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHH---SLP---A- 102 (490)
Q Consensus 32 ~~eDi~lmk~lGv~~yR--fSIsWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~H~---dlP---~- 102 (490)
..+-++.+++.|+..== +...|..-... -.+|++-..--+.+++.|+++|++.++.+.-+ +.+ .
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~-------f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~ 117 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQDGYGD-------FTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENY 117 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSBTTBT-------T-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHH
T ss_pred HHHHHHHHHHcCCCccceeccccccccccc-------cccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhh
Confidence 45667888888876544 44456552221 24555444445789999999999988766543 222 1
Q ss_pred -------cc-cccCC----------------CCChhhHHHHHHHHHHHHHHhcCCccEEEEccCcchh
Q 011240 103 -------WA-GEYGG----------------WKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVF 146 (490)
Q Consensus 103 -------~l-~~~GG----------------w~n~~~v~~F~~YA~~~f~~fgd~Vk~W~T~NEP~~~ 146 (490)
++ ....| |.|++..++|.+..+.+++.+|-. -+|+=+|||..+
T Consensus 118 ~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvd-g~w~D~~E~~~~ 184 (441)
T PF01055_consen 118 DEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVD-GWWLDFGEPSSF 184 (441)
T ss_dssp HHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-S-EEEEESTTTBSS
T ss_pred hhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCc-eEEeecCCcccc
Confidence 11 11112 788999999988888877776643 468899999874
No 134
>PRK10785 maltodextrin glucosidase; Provisional
Probab=20.25 E-value=2.6e+02 Score=31.50 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCCeEEecc-------------ccccccCCCCCCCCcCcCChHHHHHHHHHHHHHHHCCCEEEEEcc
Q 011240 33 DIELKLAKDTGVSVFRLGI-------------DWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF 96 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSI-------------sWsRI~P~~~~~G~~g~vn~~gl~~Y~~lId~l~~~GI~PivTL~ 96 (490)
.+-++-+++|||++.=++= ++-+|.|.= | ..+=.++||++|+++||++|+.+.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~------G-----t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL------G-----GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc------C-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4567899999999988762 222233321 1 123357999999999999999754
No 135
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=20.15 E-value=99 Score=30.25 Aligned_cols=61 Identities=26% Similarity=0.415 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCCeEEeccccccccCCCCCCCC----cCcCC--hHHHHHHHHHHHHHHHCCCEEEEEcc
Q 011240 33 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGL----KETVN--FAALERYKWIINRVRSYGMKVMLTLF 96 (490)
Q Consensus 33 ~eDi~lmk~lGv~~yRfSIsWsRI~P~~~~~G~----~g~vn--~~gl~~Y~~lId~l~~~GI~PivTL~ 96 (490)
.+-++-+|+||+++.-++=-+. -|... .|- --.+| .-..+=+++||++|+++||++|+++.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~--~~~~~-~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE--SPNGY-HGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE--SSSST-TTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccc--ccccc-ccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4567899999999998874333 11000 000 00111 11234467999999999999999874
Done!