BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011241
(490 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296085890|emb|CBI31214.3| unnamed protein product [Vitis vinifera]
Length = 622
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 296/476 (62%), Positives = 359/476 (75%), Gaps = 13/476 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+ NA+ + D I+ A FY IA+ RNFT+GRR EQV A+CLY+ACR+ KPFLLIDF
Sbjct: 80 HIANAIGVSGGDSIIRPALAFYTIALERNFTRGRRKEQVAAACLYIACRENKKPFLLIDF 139
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S +L INVY LGAV+LQLC++L + + V K VDPS+F+H+F L N V TA
Sbjct: 140 SEHLRINVYVLGAVFLQLCKLLSLEEHPIVQKPVDPSLFIHRFAAGLPGETNMGVSKTAL 199
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
I+ASMKRDW+ TGRKPSGLCGAALY+SAL++GLK SK+DIVKIVHICEATL KRLIEFE
Sbjct: 200 RIIASMKRDWLQTGRKPSGLCGAALYISALSYGLKCSKTDIVKIVHICEATLTKRLIEFE 259
Query: 183 NTDSGSLTIEDFMARKKELHEGVAANLPNN-GPKVSGMNEVLCKHKDTGK-PFACGLCRS 240
NT+SGSLTIE+F + +EL + ++ +N G V G E+LC+HK +GK PFA GLC
Sbjct: 260 NTESGSLTIEEFNMKAEELEKEYSSTKQSNIGSTVPGKGELLCEHKGSGKPPFAHGLCEI 319
Query: 241 CYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENS-----SFERESDSPFMSRVDKV 295
CY EF+ +S GLEGG++PPAFQ AER+RM KA+AEEN+ ++ S SP + +
Sbjct: 320 CYGEFIKLSGGLEGGSEPPAFQRAERDRMAKAAAEENADSNQIQLDKGSSSPDVCGNESS 379
Query: 296 QSPEPESIGVPKNCTTQTASNEGEGDHTKTPGV-DATTEASDGSDNFSDIDDFEVDGYLH 354
+ EP+SIG + + AS + EG + G D A D S++ SDIDD EVDGYLH
Sbjct: 380 KLAEPKSIGA----SDKQASID-EGAPSDLHGADDENANAGDESESLSDIDDVEVDGYLH 434
Query: 355 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 414
NE+EK +KKIIWE MN+EYLEEQAAKEAAAAAAK A EAS+K+ PEGL+AAQELAAA AA
Sbjct: 435 NEKEKQFKKIIWEAMNKEYLEEQAAKEAAAAAAKEAYEASFKDNPEGLKAAQELAAATAA 494
Query: 415 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSV 470
AVAKSRKE+QQKRAAEAKN+ PAQTA EATR+MLTKKRLSSKINYDVLEKLFDDSV
Sbjct: 495 AVAKSRKERQQKRAAEAKNTVPAQTAAEATRQMLTKKRLSSKINYDVLEKLFDDSV 550
>gi|449436026|ref|XP_004135795.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like [Cucumis
sativus]
Length = 643
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 293/519 (56%), Positives = 363/519 (69%), Gaps = 54/519 (10%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
MR M+N LN+GESDEI+ VA FY IA+ RNFT+GR E VQA+CLY+ACR+K+KP+LLI
Sbjct: 78 MRYMRNGLNMGESDEIIRVAGAFYRIALERNFTRGRNAEFVQAACLYIACREKNKPYLLI 137
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-----K 115
DFSNYL INVY LGAV+LQLC+VL + + V K VDPS+F+ KFT LL G K
Sbjct: 138 DFSNYLRINVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIDKFTQCLLGGTKDDGMKK 197
Query: 116 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 175
+V TA I+ SMKRDW+ TGRKPSGLCGAALY+SAL++G+K +KSDI+KIVHIC+ATL
Sbjct: 198 EVSKTALKIITSMKRDWMQTGRKPSGLCGAALYISALSNGVKCTKSDIIKIVHICDATLT 257
Query: 176 KRLIEFENTDSGSLT--------------------------------IEDFMARKKELHE 203
KRLIEFENT+SGSLT +E+F+ +L
Sbjct: 258 KRLIEFENTESGSLTNTCLLILVQALQHIDLLEYLPSGHADISEKMNMEEFIVMADKLK- 316
Query: 204 GVAANLPNNGPKVSGMNEVLCKHKD-TGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQ 262
+N N + +EVLC HK+ KP+A GLCRSCY++F+ +S GL+GG++PPAFQ
Sbjct: 317 --GSNSYTNNGSSALSDEVLCVHKNECQKPYALGLCRSCYDDFVELSGGLDGGSNPPAFQ 374
Query: 263 VAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPES----IGVPKNCTTQTASNEG 318
AE+ERM KA+ EE S + + F + + E ES + + + + A +G
Sbjct: 375 SAEKERMEKATVEEGSD-DCSAIGKFSQGLKPCNNTEKESDNVHVDASETASFKEAEAKG 433
Query: 319 EGDHTKTPGVDAT--------TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMN 370
D + P D T ASD S+N+SDIDD EVDGYLHNEEEKHYKKIIWEEMN
Sbjct: 434 TADEQRGPDDDVNKVGADDLGTCASDDSENWSDIDDVEVDGYLHNEEEKHYKKIIWEEMN 493
Query: 371 REYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAE 430
REYLEEQAAK+AAAAAAK A EA+++NC E L+AA++LA AAAAAVAKSRKE+Q+KRAAE
Sbjct: 494 REYLEEQAAKDAAAAAAKKAYEANFQNCSEDLKAAKDLAEAAAAAVAKSRKERQRKRAAE 553
Query: 431 AKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 469
AKN+ PAQTA EATR+ML KKRLSSKINYDVL+KLFD+S
Sbjct: 554 AKNATPAQTAAEATRQMLNKKRLSSKINYDVLDKLFDES 592
>gi|449485890|ref|XP_004157302.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like [Cucumis
sativus]
Length = 663
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 294/519 (56%), Positives = 364/519 (70%), Gaps = 54/519 (10%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
MR M+N LN+GESDEI+ VA FY IA+ RNFT+GR E VQA+CLY+ACR+K+KP+LLI
Sbjct: 78 MRYMRNGLNMGESDEIIRVAGAFYRIALERNFTRGRNAEFVQAACLYIACREKNKPYLLI 137
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-----K 115
DFSNYL INVY LGAV+LQLC+VL + + V K VDPS+F+ KFT LL G K
Sbjct: 138 DFSNYLRINVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIDKFTQCLLGGTKDDGMKK 197
Query: 116 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 175
+V TA I+ SMKRDW+ TGRKPSGLCGAALY+SAL++G+K +KSDI+KIVHIC+ATL
Sbjct: 198 EVSKTALKIITSMKRDWMQTGRKPSGLCGAALYISALSNGVKCTKSDIIKIVHICDATLT 257
Query: 176 KRLIEFENTDSGSLT--------------------------------IEDFMARKKELHE 203
KRLIEFENT+SGSLT +E+F+ +L
Sbjct: 258 KRLIEFENTESGSLTNTCLLILVQALQHIDLLEYLPSGHADISEKMNMEEFIVMADKLKG 317
Query: 204 GVAANLPNNGPKVSGMNEVLCKHKD-TGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQ 262
+ + NNG +EVLC HK+ KP+A GLCRSCY++F+ +S GL+GG++PPAFQ
Sbjct: 318 --SNSYTNNGSNALS-DEVLCVHKNECQKPYALGLCRSCYDDFVELSGGLDGGSNPPAFQ 374
Query: 263 VAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPES----IGVPKNCTTQTASNEG 318
AE+ERM KA+ EE S + + F + + E ES + + + + A +G
Sbjct: 375 SAEKERMEKATVEEGSD-DCSAIGKFSQGLKPCNNTEKESDNVHVDASETASFKEAEAKG 433
Query: 319 EGDHTKTPGVDAT--------TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMN 370
D + P D T ASD S+N+SDIDD EVDGYLHNEEEKHYKKIIWEEMN
Sbjct: 434 TADEQRGPDDDVNKVGADDLGTCASDDSENWSDIDDVEVDGYLHNEEEKHYKKIIWEEMN 493
Query: 371 REYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAE 430
REYLEEQAAK+AAAAAAK A EA+++NC E L+AA++LA AAAAAVAKSRKE+Q+KRAAE
Sbjct: 494 REYLEEQAAKDAAAAAAKKAYEANFQNCSEDLKAAKDLAEAAAAAVAKSRKERQRKRAAE 553
Query: 431 AKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 469
AKN+ PAQTA EATR+ML KKRLSSKINYDVL+KLFD+S
Sbjct: 554 AKNATPAQTAAEATRQMLNKKRLSSKINYDVLDKLFDES 592
>gi|224106357|ref|XP_002314140.1| predicted protein [Populus trichocarpa]
gi|222850548|gb|EEE88095.1| predicted protein [Populus trichocarpa]
Length = 541
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 266/474 (56%), Positives = 324/474 (68%), Gaps = 45/474 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
M +KN L +GE+ IV+ A +Y IAV RNFT+GRRT+QVQA+CLY+ACR+ KP+LLI
Sbjct: 56 MLNIKNGLGMGENLGIVNQAMVYYRIAVERNFTRGRRTDQVQAACLYIACRENRKPYLLI 115
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
DFS YL IN+Y LGAV+LQLC+VL + + + K DPSIF+HK+T L G NK++ D
Sbjct: 116 DFSIYLQINIYVLGAVFLQLCKVLNLTEHAICQKLHDPSIFIHKYTASLSGGKNKEISDD 175
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ASM WI TGR PS L GAALY+SAL+HGL SKSDI+++VH+C TL KRL+E
Sbjct: 176 ALTIIASMNYHWIQTGRTPSALWGAALYISALSHGLNCSKSDILRLVHVCGKTLSKRLVE 235
Query: 181 FENTDSGSLTIEDFMARKKELHEGVAANLP-NNGPKVSGMNEVLCKHKDTGKP-FACGLC 238
FENT+SGSLT+E EL E ++LP N + S E+LC+HK T +P F GLC
Sbjct: 236 FENTESGSLTVE-------ELKE---SSLPRRNFGEPSSSKELLCQHKGTNRPSFGFGLC 285
Query: 239 RSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSP 298
+ CY I G +GG DPPAFQ AE +RM K+S N SDS +
Sbjct: 286 KDCY----AIVIGFDGGTDPPAFQNAESQRMKKSSIRHNV-----SDSNLV--------- 327
Query: 299 EPESIGVPKNCTTQTASNEGEGDHTKTPGV-DATTEASDGSDNFSDIDDFEVDGYLHNEE 357
TA+ D K GV D +++A D SD FSDIDD EVD YLHNEE
Sbjct: 328 --------------TATGHLANDFDKLHGVGDMSSKAFDESDGFSDIDDAEVDSYLHNEE 373
Query: 358 EKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVA 417
EK YKKIIWEEMNREYL+EQAAKEAAAA K A E ++KNCPE LQAA++L AA A +A
Sbjct: 374 EKRYKKIIWEEMNREYLQEQAAKEAAAATLKKAWEENFKNCPEDLQAAKKLDAAVKADLA 433
Query: 418 KSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSVC 471
KS+KE QQKRA+EA+N PA++A EA RMLTKKRL SKINYDVLEKLF+DSVC
Sbjct: 434 KSKKETQQKRASEARNLAPAKSAAEAVHRMLTKKRLGSKINYDVLEKLFEDSVC 487
>gi|255569418|ref|XP_002525676.1| transcription initiation factor brf1, putative [Ricinus communis]
gi|223534976|gb|EEF36659.1| transcription initiation factor brf1, putative [Ricinus communis]
Length = 625
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 281/480 (58%), Positives = 351/480 (73%), Gaps = 21/480 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
M +KN L++GE+ IV A +Y IAV RNFTKGRRTEQVQA+CLY+ACR+ KP+LLI
Sbjct: 77 MIYIKNGLDMGENLAIVDQAMMYYRIAVERNFTKGRRTEQVQAACLYIACRENRKPYLLI 136
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
DFSN+L IN+Y LGAV+LQLC+VL + + S K +DPSIF+HK+T L G NK + D+
Sbjct: 137 DFSNFLRINIYVLGAVFLQLCKVLNLTEHSICQKLLDPSIFIHKYTASLSGGKNKDISDS 196
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ASM RDW+ TGR+PSGL GAALY++AL+HGL S+ DI+K+VH+C+ATL KRL+E
Sbjct: 197 ALTIIASMNRDWMQTGRRPSGLWGAALYIAALSHGLTCSRKDILKLVHVCDATLSKRLVE 256
Query: 181 FENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGK-PFACGLCR 239
FENT+SGSLTIE+ A+ +EL E + + N K S E+LC+HK T + P+A GLC+
Sbjct: 257 FENTESGSLTIEEINAKAEELRES-STDQSNFVLKGSSSKELLCQHKGTSRIPYAYGLCK 315
Query: 240 SCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSS-----------FERESDSPF 288
CYE F+ G +GG+DPPAFQ AER R SA N++ FE+E +S
Sbjct: 316 GCYEYFI----GFDGGSDPPAFQQAERRRKENLSAMNNNNDSNSVSTMPFLFEKELNSQH 371
Query: 289 MSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFE 348
R +++ S + ES G +++G G D +++A D SDNFSDIDD E
Sbjct: 372 ADRDEQLLSKKAESTG---EAALHLPADDG-GYSKLHDDDDMSSKALDESDNFSDIDDAE 427
Query: 349 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQEL 408
VDGYLHNEEE +KKIIWEEMNREYLEEQAAKEA AAAAK A EA +K+CPE +QAA+EL
Sbjct: 428 VDGYLHNEEEAQFKKIIWEEMNREYLEEQAAKEAVAAAAKEAWEAKFKDCPEEMQAAREL 487
Query: 409 AAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 468
AA AAA+AKS+KEKQQKRAAEAKNS PAQ+A EA R+MLTKKRLSSKINYDVLEKLFD+
Sbjct: 488 EAAVAAALAKSKKEKQQKRAAEAKNSVPAQSASEAARQMLTKKRLSSKINYDVLEKLFDE 547
>gi|297829466|ref|XP_002882615.1| RNA polymerase II transcription factor [Arabidopsis lyrata subsp.
lyrata]
gi|297328455|gb|EFH58874.1| RNA polymerase II transcription factor [Arabidopsis lyrata subsp.
lyrata]
Length = 600
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 268/477 (56%), Positives = 329/477 (68%), Gaps = 42/477 (8%)
Query: 4 MKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+++AL IG E +++ +A F+ AV +NFTKGRRTE VQASCLYL CR+ + PFLLIDF
Sbjct: 81 LRDALGIGDERADVIDMAVLFFKSAVEQNFTKGRRTELVQASCLYLTCRELNVPFLLIDF 140
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTA 121
S+YL ++VYELG+VYLQLC++LYIAD N K VDPSIF+ +F++ LL G NK V TA
Sbjct: 141 SSYLRVSVYELGSVYLQLCEMLYIADNQNYEKLVDPSIFIDRFSNILLKGTHNKAVVKTA 200
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
I+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SKSDIV IVHICEATL KRLIEF
Sbjct: 201 IAIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKSDIVNIVHICEATLTKRLIEF 260
Query: 182 ENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSC 241
NT+SG+L +++ R E H+ + P S VLC H+D+ KPF GLC+ C
Sbjct: 261 GNTESGNLNVDEITER--ESHKRSSTMKP-----TSNKEAVLCMHQDS-KPFGYGLCKDC 312
Query: 242 YEEFMTISEGLEGGADPPAFQVAERERMVKASAEEN----SSFERE----SDSPFMSRVD 293
YE+F+ +S GL GG+DPPAFQ AE ERM KA+ EEN SS + SD MS+ +
Sbjct: 313 YEDFINVSGGLVGGSDPPAFQRAENERMEKAAREENEGGISSLNHDEQLYSDYCSMSKSE 372
Query: 294 KVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYL 353
K+ S + E + +G+ +H T SD SDNFSDI D EVDGY+
Sbjct: 373 KLFSEKGER------------NKDGDEEHADT---------SDESDNFSDISDDEVDGYI 411
Query: 354 HNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAA 413
+NEEE HYK I W EMN++YLEEQAAKEAA AA AL+AS NCPE A++ AA
Sbjct: 412 NNEEETHYKTITWTEMNKDYLEEQAAKEAALKAASEALKASNSNCPED---ARKAFEAAK 468
Query: 414 AAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSV 470
A AKSRKEKQQK+A EAKN+ P TA+EA RR L KKRLS INYDVLE+LFD S
Sbjct: 469 ADAAKSRKEKQQKKAEEAKNAAPPATAMEAVRRTLEKKRLSLVINYDVLEELFDTST 525
>gi|145338292|ref|NP_187547.2| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
gi|110741698|dbj|BAE98795.1| putative transcription factor [Arabidopsis thaliana]
gi|332641235|gb|AEE74756.1| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
Length = 604
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 261/471 (55%), Positives = 328/471 (69%), Gaps = 26/471 (5%)
Query: 1 MRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 59
+ +K+AL IG E D+++ +A +F+ +AV +NFTKGRRTE VQASCLYL CR+ + LL
Sbjct: 78 LMNLKDALGIGDERDDVIVIAAKFFEMAVEQNFTKGRRTELVQASCLYLTCRELNIALLL 137
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVC 118
IDFS+YL ++VYELG+VYLQLC++LY+ + N K VDPSIF+ +F++ LL G NK V
Sbjct: 138 IDFSSYLRVSVYELGSVYLQLCEMLYLVENRNYEKLVDPSIFMDRFSNSLLKGKNNKDVV 197
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
TARDI+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SK+DIV IVHICEATL KRL
Sbjct: 198 ATARDIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKTDIVNIVHICEATLTKRL 257
Query: 179 IEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLC 238
IEF +TDSG+L + + R++E H+ P S VLC H+D+ KPF GLC
Sbjct: 258 IEFGDTDSGNLNVNEL--RERESHKRSFTMKP-----TSNKEAVLCMHQDS-KPFGYGLC 309
Query: 239 RSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSP 298
CY++F+ +S GL GG++PPAFQ AE+ERM KA+ EEN E ++ +++ S
Sbjct: 310 EDCYKDFINVSGGLVGGSNPPAFQRAEKERMEKAAREEN-----EGGISSLNHDEQLYSD 364
Query: 299 EPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEE 358
K C S +GE D G + + SD SDNFSDI D EV+GY++NEEE
Sbjct: 365 YCSMSKRGKQC-----SEKGEKDK---DGAEEHADTSDESDNFSDISDDEVNGYINNEEE 416
Query: 359 KHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAK 418
HYK I W EMN++YLEEQAAKEAA AA AL+AS NCPE A++ AA A AK
Sbjct: 417 THYKTITWTEMNKDYLEEQAAKEAALKAASEALKASNSNCPED---ARKAFEAAKADAAK 473
Query: 419 SRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 469
SRKEKQQK+A EAKN+ P TA+EA RR L KKRLSS INYDVLE LFD S
Sbjct: 474 SRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSVINYDVLESLFDTS 524
>gi|6478939|gb|AAF14044.1|AC011436_28 putative transcription factor [Arabidopsis thaliana]
Length = 600
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 258/471 (54%), Positives = 328/471 (69%), Gaps = 30/471 (6%)
Query: 1 MRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 59
+ +K+AL IG E D+++ +A +F+ +AV +NFTKGRRTE VQASCLYL CR+ + LL
Sbjct: 78 LMNLKDALGIGDERDDVIVIAAKFFEMAVEQNFTKGRRTELVQASCLYLTCRELNIALLL 137
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVC 118
IDFS+YL ++VYELG+VYLQLC++LY+ + N K VDPSIF+ +F++ LL G NK V
Sbjct: 138 IDFSSYLRVSVYELGSVYLQLCEMLYLVENRNYEKLVDPSIFMDRFSNSLLKGKNNKDVV 197
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
TARDI+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SK+DIV IVHICEATL KRL
Sbjct: 198 ATARDIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKTDIVNIVHICEATLTKRL 257
Query: 179 IEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLC 238
IEF +TDSG+L + + R++E H+ P S VLC H+D+ KPF GLC
Sbjct: 258 IEFGDTDSGNLNVNEL--RERESHKRSFTMKP-----TSNKEAVLCMHQDS-KPFGYGLC 309
Query: 239 RSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSP 298
CY++F+ +S GL GG++PPAFQ AE+ERM KA+ EEN E ++ +++
Sbjct: 310 EDCYKDFINVSGGLVGGSNPPAFQRAEKERMEKAAREEN-----EGGISSLNHDEQLY-- 362
Query: 299 EPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEE 358
+ + C + +GE D G + + SD SDNFSDI D EV+GY++NEEE
Sbjct: 363 ---HLRIYLGCVAE----KGEKD---KDGAEEHADTSDESDNFSDISDDEVNGYINNEEE 412
Query: 359 KHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAK 418
HYK I W EMN++YLEEQAAKEAA AA AL+AS NCPE A++ AA A AK
Sbjct: 413 THYKTITWTEMNKDYLEEQAAKEAALKAASEALKASNSNCPED---ARKAFEAAKADAAK 469
Query: 419 SRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 469
SRKEKQQK+A EAKN+ P TA+EA RR L KKRLSS INYDVLE LFD S
Sbjct: 470 SRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSVINYDVLESLFDTS 520
>gi|297829468|ref|XP_002882616.1| hypothetical protein ARALYDRAFT_317739 [Arabidopsis lyrata subsp.
lyrata]
gi|297328456|gb|EFH58875.1| hypothetical protein ARALYDRAFT_317739 [Arabidopsis lyrata subsp.
lyrata]
Length = 1245
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 265/494 (53%), Positives = 325/494 (65%), Gaps = 48/494 (9%)
Query: 4 MKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+++AL IG E +++ +A F+ AV +NFTKGRRTE VQASCLYL CR+ + PFLLIDF
Sbjct: 81 LRDALGIGDERADVIDMAVLFFKSAVEQNFTKGRRTELVQASCLYLTCRELNVPFLLIDF 140
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTA 121
S+YL ++VYELG+VYLQLC++LYIAD N K VDPSIF+ +F++ LL G NK V TA
Sbjct: 141 SSYLRVSVYELGSVYLQLCEMLYIADNQNYEKLVDPSIFIDRFSNILLKGTHNKAVVKTA 200
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
I+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SKSDIV IVHICEATL KRLIEF
Sbjct: 201 IAIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKSDIVNIVHICEATLTKRLIEF 260
Query: 182 ENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSC 241
NT+SG+L +++ R E H+ + P S VLC H+D+ KPF GLC+ C
Sbjct: 261 GNTESGNLNVDEITER--ESHKRSSTMKP-----TSNKEAVLCMHQDS-KPFGYGLCKDC 312
Query: 242 YEEFMTISEGLEGGADPPAFQVAERERMVKASAEEN----SSFERESDSPFMSRVDKVQS 297
YE+F+ +S GL GG+DPPAFQ AE ERM KA+ EEN SS D + K+
Sbjct: 313 YEDFINVSGGLVGGSDPPAFQRAENERMEKAAREENEGGISSLNH--DEQLYDLILKISC 370
Query: 298 PEP----------------------ESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEAS 335
E E + + C + +GD + + S
Sbjct: 371 AELLTVRLLQYEQKRKTIFCSSLSFERLRIYLCCVAEKGERNKDGD-------EEHADTS 423
Query: 336 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 395
D SDNFSDI D EVDGY++NEEE HYK I W EMN++YLEEQAAKEAA AA AL+AS
Sbjct: 424 DESDNFSDISDDEVDGYINNEEETHYKTITWTEMNKDYLEEQAAKEAALKAASEALKASN 483
Query: 396 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 455
NCPE A++ AA A AKSRKEKQQK+A EAKN+ P TA+EA RR L KKRLS
Sbjct: 484 SNCPED---ARKAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAMEAVRRTLEKKRLSL 540
Query: 456 KINYDVLEKLFDDS 469
INYDVLE+LFD S
Sbjct: 541 VINYDVLEELFDTS 554
>gi|115463095|ref|NP_001055147.1| Os05g0305100 [Oryza sativa Japonica Group]
gi|113578698|dbj|BAF17061.1| Os05g0305100 [Oryza sativa Japonica Group]
gi|222631042|gb|EEE63174.1| hypothetical protein OsJ_17983 [Oryza sativa Japonica Group]
Length = 574
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 234/473 (49%), Positives = 315/473 (66%), Gaps = 37/473 (7%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+RQ+ ++L++ D I+ +A R+Y +AV +NFT+GRRT V A+CLY+ACRQ K +LLI
Sbjct: 78 IRQIVSSLHVAGGDTIISMAHRYYTLAVDKNFTRGRRTTHVAAACLYIACRQSKKAYLLI 137
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
DFS++L I+VY LGAV+LQLCQVL +A+ + K +DPS+F+H+FT+RLL + V DT
Sbjct: 138 DFSDHLQISVYVLGAVFLQLCQVLLLAEHPVIQKLIDPSLFIHRFTERLLGKRDNAVSDT 197
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DIV +VH+CEATL KRLIE
Sbjct: 198 ALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGYDYTKADIVAVVHVCEATLTKRLIE 257
Query: 181 FENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRS 240
FENTDSGSLTIE+F+A+ E V P +G EVLCKHKD + FA GLC
Sbjct: 258 FENTDSGSLTIEEFLAKADE-QVLVTKISPKSG-------EVLCKHKDKAEHFAHGLCEK 309
Query: 241 CYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERES--DSPFMSRVDKVQ-- 296
CY +FM +S GLEGG+DPPAFQ AE++R+ A + ++ +E+ +S +R V+
Sbjct: 310 CYNKFMKLSGGLEGGSDPPAFQRAEKQRLEAAKNAKGTAASKEAALESVCEARESDVENN 369
Query: 297 -SPEPESIGVPKNCTTQTASNEGEGDHTKTP-GVDATTEASDGSDNFSDIDDFEVDGYLH 354
+ P++I K+ T + G+ T+ P G +A +G ++ SDIDD EVDGYLH
Sbjct: 370 ITTPPKNIIGDKHSTIPSVKVAGDSVATEDPEGEGKNDKADEGPESLSDIDDAEVDGYLH 429
Query: 355 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 414
NEEE YKKIIWEEMN+EYLEEQAAK A AA AA
Sbjct: 430 NEEETQYKKIIWEEMNKEYLEEQAAKAALAA-----------------------ELAARG 466
Query: 415 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 467
V + K K+++ + KN+ PAQT EAT+ ML +KRL SKIN + + KL++
Sbjct: 467 VVVEEGKRKRRRHNEDGKNATPAQTPAEATQNMLKRKRLGSKINDEAVNKLYN 519
>gi|359481012|ref|XP_002269372.2| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Vitis
vinifera]
Length = 529
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 252/427 (59%), Positives = 312/427 (73%), Gaps = 13/427 (3%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+ NA+ + D I+ A FY IA+ RNFT+GRR EQV A+CLY+ACR+ KPFLLIDF
Sbjct: 80 HIANAIGVSGGDSIIRPALAFYTIALERNFTRGRRKEQVAAACLYIACRENKKPFLLIDF 139
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S +L INVY LGAV+LQLC++L + + V K VDPS+F+H+F L N V TA
Sbjct: 140 SEHLRINVYVLGAVFLQLCKLLSLEEHPIVQKPVDPSLFIHRFAAGLPGETNMGVSKTAL 199
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
I+ASMKRDW+ TGRKPSGLCGAALY+SAL++GLK SK+DIVKIVHICEATL KRLIEFE
Sbjct: 200 RIIASMKRDWLQTGRKPSGLCGAALYISALSYGLKCSKTDIVKIVHICEATLTKRLIEFE 259
Query: 183 NTDSGSLTIEDFMARKKELHEGVAANLPNN-GPKVSGMNEVLCKHKDTGK-PFACGLCRS 240
NT+SGSLTIE+F + +EL + ++ +N G V G E+LC+HK +GK PFA GLC
Sbjct: 260 NTESGSLTIEEFNMKAEELEKEYSSTKQSNIGSTVPGKGELLCEHKGSGKPPFAHGLCEI 319
Query: 241 CYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENS-----SFERESDSPFMSRVDKV 295
CY EF+ +S GLEGG++PPAFQ AER+RM KA+AEEN+ ++ S SP + +
Sbjct: 320 CYGEFIKLSGGLEGGSEPPAFQRAERDRMAKAAAEENADSNQIQLDKGSSSPDVCGNESS 379
Query: 296 QSPEPESIGVPKNCTTQTASNEGEGDHTKTPGV-DATTEASDGSDNFSDIDDFEVDGYLH 354
+ EP+SIG + + AS + EG + G D A D S++ SDIDD EVDGYLH
Sbjct: 380 KLAEPKSIGA----SDKQASID-EGAPSDLHGADDENANAGDESESLSDIDDVEVDGYLH 434
Query: 355 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 414
NE+EK +KKIIWE MN+EYLEEQAAKEAAAAAAK A EAS+K+ PEGL+AAQELAAA AA
Sbjct: 435 NEKEKQFKKIIWEAMNKEYLEEQAAKEAAAAAAKEAYEASFKDNPEGLKAAQELAAATAA 494
Query: 415 AVAKSRK 421
AVAKSRK
Sbjct: 495 AVAKSRK 501
>gi|242088663|ref|XP_002440164.1| hypothetical protein SORBIDRAFT_09g027090 [Sorghum bicolor]
gi|241945449|gb|EES18594.1| hypothetical protein SORBIDRAFT_09g027090 [Sorghum bicolor]
Length = 579
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 243/476 (51%), Positives = 309/476 (64%), Gaps = 41/476 (8%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+RQ+ N LN+ + IV A RFY +AV RNFT+GRRT V A+CLY+ACRQ K +LLI
Sbjct: 79 IRQIVNNLNVSGGETIVSKAYRFYELAVDRNFTRGRRTTHVAAACLYIACRQTKKAYLLI 138
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
DFS+YL I+VY LGAV+LQLCQVL +AD V K VDPS+F+H+FT RLL + V DT
Sbjct: 139 DFSDYLQISVYVLGAVFLQLCQVLLLADHPVVQKLVDPSLFIHRFTHRLLGKRDNAVSDT 198
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DIV +VH+CEATL KRLIE
Sbjct: 199 ALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGKNYTKADIVSVVHVCEATLTKRLIE 258
Query: 181 FENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTG--KPFACGLC 238
FENTDSGSLTIE+F+A E +E +P + PK SG E+LCKHK+ + FA GLC
Sbjct: 259 FENTDSGSLTIEEFLATADEYNE---EPVPKHSPK-SG--EILCKHKNKKGFEHFAHGLC 312
Query: 239 RSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSP 298
CY +F +S GLEGGADPPAFQ AE++R+ A E ++ +E + + Q+
Sbjct: 313 EKCYNKFTKLSGGLEGGADPPAFQRAEKKRLEAAKRAEEAATVKE--AALEESLCNTQNS 370
Query: 299 EPESIGVP-KNCTTQTASNEGEGD--HTKTPGVDA-----TTEASDGSDNFSDIDDFEVD 350
E ES P K + +S G G+ + P D E + S++ SDIDD EVD
Sbjct: 371 EVESTITPRKGLSGHKSSTVGSGELINDSVPPKDPEEGGENCEGNADSESLSDIDDAEVD 430
Query: 351 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 410
YLHNEEEK YKKIIWEEMN+EYLEEQAAKEA AA
Sbjct: 431 WYLHNEEEKQYKKIIWEEMNKEYLEEQAAKEALAA-----------------------EL 467
Query: 411 AAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 466
AA V + K+K+++R + K+S PA+T EAT ML +K L SKIN + +L+
Sbjct: 468 AARGIVVEEGKKKKRRRNEDTKSSTPAETPAEATYNMLKRKGLGSKINEGAVGELY 523
>gi|357160321|ref|XP_003578728.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like
[Brachypodium distachyon]
Length = 580
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 240/477 (50%), Positives = 309/477 (64%), Gaps = 43/477 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ Q+ +L++G D I+ +A +FY +AV NFT+GRRT QV A+CLY+ACRQ K +LLI
Sbjct: 79 IWQIVTSLHVGGGDTIIDMAHKFYTLAVDHNFTRGRRTTQVAAACLYIACRQSKKAYLLI 138
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
DFS+YL I+VY LGAV+LQLCQVL +A+ V K +DPS+F+H+FT+RLL + V DT
Sbjct: 139 DFSDYLKISVYVLGAVFLQLCQVLLLAEHPIVQKLIDPSLFIHRFTERLLGKRDNAVSDT 198
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++KSDIV +VHICEATL KRLIE
Sbjct: 199 ALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGYNYTKSDIVGVVHICEATLTKRLIE 258
Query: 181 FENTDSGSLTIEDFMARKKELHEGVAANLPNNGP-KVSGMNEVLCKHKDTG-KPFACGLC 238
FENTDSGSLTIEDF+A+ E P + P + SG EVLCKHKD + FA GLC
Sbjct: 259 FENTDSGSLTIEDFLAKADE-------EQPVSKPSRKSG--EVLCKHKDKDTEHFAHGLC 309
Query: 239 RSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFER-----ESDSPFMSR-- 291
CY +F+ +S GLEGGADPPAFQ AER+R+ A E ++ + ES+ +
Sbjct: 310 EKCYNKFIKMSGGLEGGADPPAFQRAERQRLEAAKKSEEAAALKEAALGESNCEIQNSDV 369
Query: 292 VDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGS-DNFSDIDDFEVD 350
D + S + IG K+ T + N + +K P V D ++FSDIDD EVD
Sbjct: 370 EDNIISLKKGPIG-DKSSTIPSEQNANDNIASKDPEVGGENSKPDADPESFSDIDDVEVD 428
Query: 351 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 410
GYLHNEEE HYKKIIWEEMN+EY+EEQAAKEA AA
Sbjct: 429 GYLHNEEETHYKKIIWEEMNKEYIEEQAAKEALAA-----------------------EL 465
Query: 411 AAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 467
AA ++K+++R + KN PA+T EAT ML +K L SKIN + + L++
Sbjct: 466 AARGVGVGGGQQKKRRRNEDTKNLSPAETPAEATYNMLKRKGLGSKINVEAVGGLYN 522
>gi|297842649|ref|XP_002889206.1| hypothetical protein ARALYDRAFT_316772 [Arabidopsis lyrata subsp.
lyrata]
gi|297335047|gb|EFH65465.1| hypothetical protein ARALYDRAFT_316772 [Arabidopsis lyrata subsp.
lyrata]
Length = 574
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 231/479 (48%), Positives = 306/479 (63%), Gaps = 49/479 (10%)
Query: 1 MRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 59
+R +K+AL IG E D+++ +A F+ +A +NFTKGRRTE VQ+SCLYL CR+K PFLL
Sbjct: 78 LRNLKDALGIGDERDDVIVMAAEFFEMATDQNFTKGRRTELVQSSCLYLTCREKKIPFLL 137
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK---- 115
IDFS+YL ++VYELG+VYLQLC++LY+ N + VDPSIF+ +F + LL G +
Sbjct: 138 IDFSSYLRVSVYELGSVYLQLCEMLYLVQNENYEELVDPSIFIPRFMNNLLKGAHNITKN 197
Query: 116 ---KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
KV TA +I++SMKRDW+ TGRKPSG+CGAA+Y++AL+HG+ S++DI KIVH+CEA
Sbjct: 198 VWDKVFGTATNIISSMKRDWMQTGRKPSGICGAAIYIAALSHGIMCSRADIAKIVHMCEA 257
Query: 173 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKP 232
T+ KRL EF NT +GSLT+++ + + PN+ V V C+HKD K
Sbjct: 258 TITKRLNEFANTKAGSLTVDELDKSEPISRKEAFTPRPNSDEGV-----VNCQHKDL-KR 311
Query: 233 FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRV 292
F GLC+SC+++F+ IS G+ GG+DPPAFQ AE+ERM KA+ EEN + +S+
Sbjct: 312 FGYGLCKSCHDDFIKISGGIVGGSDPPAFQRAEKERMEKAAREENEGGVGSDEQVNVSKG 371
Query: 293 DKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDN--FSDIDDFEVD 350
+K Q PE +G+G+ G + E SD ++ SD DD EVD
Sbjct: 372 EK-QCPE-----------------KGQGEKY---GGEEHAEYSDDDESGICSDDDDSEVD 410
Query: 351 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 410
L E+E K W NREY++EQA KEAA AA NCPE A+ L
Sbjct: 411 HILLGEDETLLKTTAWNLQNREYVKEQAEKEAALKAA---------NCPED---ARNLVE 458
Query: 411 AAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 469
A+ AAVAKSRKEK+QKRA E KN+ P T +EA RR L +KRL INYDVLE+LFD S
Sbjct: 459 ASKAAVAKSRKEKRQKRAEEEKNAPPPATTMEAVRRTLERKRLGGLINYDVLEELFDTS 517
>gi|302798535|ref|XP_002981027.1| hypothetical protein SELMODRAFT_444750 [Selaginella moellendorffii]
gi|300151081|gb|EFJ17728.1| hypothetical protein SELMODRAFT_444750 [Selaginella moellendorffii]
Length = 636
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 220/492 (44%), Positives = 312/492 (63%), Gaps = 44/492 (8%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + ++L++G D+IV A R Y +AV +NFTKGRRT QV A+CLY+ CRQ +KP+LLI
Sbjct: 93 IRNIASSLSVGGGDDIVGSAHRIYVLAVEKNFTKGRRTSQVAAACLYIVCRQGNKPYLLI 152
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL----PGGNKK 116
DFS+ L +VY LGAV+LQLC +L + V K VDPS+F+H+FTDRLL PG + K
Sbjct: 153 DFSDCLQTSVYLLGAVFLQLCTLLRLDQHPMVQKPVDPSLFIHRFTDRLLHRIAPGTSSK 212
Query: 117 ----VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+ +TA I+ASMK+DWI TGR+PSG+CGAAL +S HGL+ S +D+ +V++C+A
Sbjct: 213 NQFAIANTALRIVASMKQDWIQTGRRPSGICGAALLLSTRIHGLECSTADVESVVYVCKA 272
Query: 173 TLMKRLIEFENTDSGSLTIEDFMA----RKKELHEGVAANLPNNGPKVSGMNEVLCKHKD 228
T+ KRL+EF NT++GSLT E+F A R+KE+ ++ NNG + E+LC+HKD
Sbjct: 273 TITKRLVEFSNTEAGSLTPEEFEAKAKQREKEMLSVSQTDIVNNGV----IKEILCEHKD 328
Query: 229 TG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA--ERERMVK---------ASAEE 276
+G + +A GLC++CY++F+ IS GL+GG+ PPAFQ A ERER++K A ++E
Sbjct: 329 SGAQHYAHGLCKNCYDDFVKISGGLQGGSAPPAFQRAQKERERLLKNKKRKLTAEAISDE 388
Query: 277 NSSFERESDSPFMSR-VDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEAS 335
+ + SP + + K E S + T ++E + + VD
Sbjct: 389 DEDLTCTNSSPVAEKAIKKKLEQEEHSYFDADDVTESCVTHETKAEKRYEDSVD------ 442
Query: 336 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 395
D ++ SDIDD E+ YL+ E+E K I+W EMN+EY++EQ AKEAA A ++ A
Sbjct: 443 DEPESLSDIDDVELTTYLNTEDEIRLKTIVWTEMNKEYIQEQEAKEAALKAQAESMAA-- 500
Query: 396 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 455
+ + A AAA V SRK ++ K A N PA++A EATR+ML KKRLSS
Sbjct: 501 ------VSTSGTAAEIAAATVVMSRKARKHKHGDTA-NCKPAESAAEATRQMLEKKRLSS 553
Query: 456 KINYDVLEKLFD 467
K+NY VLEK+F+
Sbjct: 554 KLNYSVLEKMFN 565
>gi|413946304|gb|AFW78953.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
Length = 515
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 236/476 (49%), Positives = 306/476 (64%), Gaps = 43/476 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+RQ+ N L+I + IV A RFY +A+ RNFT+GRRT V A+CLY+ACRQ K +LLI
Sbjct: 14 IRQIVNNLHISGGETIVSKAFRFYELALDRNFTRGRRTTHVAAACLYIACRQSKKAYLLI 73
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
DFS++L I+VY LGAV+LQLCQVL +A+ V K VDPS+F+H+FT LL N V DT
Sbjct: 74 DFSDHLQISVYVLGAVFLQLCQVLQLAEHPVVQKLVDPSLFIHRFTKLLLGRRNNDVSDT 133
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DIV +VH+CEATL KRLIE
Sbjct: 134 ALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKADIVSVVHVCEATLTKRLIE 193
Query: 181 FENTDSGSLTIEDFMARKKELH-EGVAANLPNNGPKVSGMNEVLCKHKDTG-KPFACGLC 238
FENTDSGSLTIE+F+A E + E V+ + P +G E+LCKHKD G + FA GLC
Sbjct: 194 FENTDSGSLTIEEFLATADESNEEPVSKHSPKSG-------EILCKHKDKGFEHFAHGLC 246
Query: 239 RSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSP 298
CY +F +S GLEGG+DPPAFQ AE++R+ A E ++ +E+ + Q+
Sbjct: 247 EKCYNKFTKLSGGLEGGSDPPAFQRAEKKRLEAAKRAEEAAAAKEAAL--EESLCDTQNS 304
Query: 299 EPESIGVPKNCTTQTASNE--GEG---DHTKTPGVDATTEASDGS---DNFSDIDDFEVD 350
E ES P+ + S++ EG D + E +G+ ++ SDIDD EVD
Sbjct: 305 EVESAMTPRKGLSGDKSSKMGSEGLINDSMPPKDPEEGGENCEGNADPESLSDIDDAEVD 364
Query: 351 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 410
GYLHNEEE YKKIIWEEMN+EYLEEQAAKEA A A
Sbjct: 365 GYLHNEEETQYKKIIWEEMNKEYLEEQAAKEALA------------------------AE 400
Query: 411 AAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 466
AA + +K++KR K+S PA+T EAT ML +K L SKIN +++L+
Sbjct: 401 LAARGIDPEAGKKKRKRNEGTKSSTPAETPAEATCNMLKRKGLGSKINVGAVDELY 456
>gi|226492330|ref|NP_001141990.1| uncharacterized protein LOC100274140 [Zea mays]
gi|194706710|gb|ACF87439.1| unknown [Zea mays]
gi|413946300|gb|AFW78949.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
Length = 580
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 236/476 (49%), Positives = 306/476 (64%), Gaps = 43/476 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+RQ+ N L+I + IV A RFY +A+ RNFT+GRRT V A+CLY+ACRQ K +LLI
Sbjct: 79 IRQIVNNLHISGGETIVSKAFRFYELALDRNFTRGRRTTHVAAACLYIACRQSKKAYLLI 138
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
DFS++L I+VY LGAV+LQLCQVL +A+ V K VDPS+F+H+FT LL N V DT
Sbjct: 139 DFSDHLQISVYVLGAVFLQLCQVLQLAEHPVVQKLVDPSLFIHRFTKLLLGRRNNDVSDT 198
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DIV +VH+CEATL KRLIE
Sbjct: 199 ALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKADIVSVVHVCEATLTKRLIE 258
Query: 181 FENTDSGSLTIEDFMARKKELH-EGVAANLPNNGPKVSGMNEVLCKHKDTG-KPFACGLC 238
FENTDSGSLTIE+F+A E + E V+ + P +G E+LCKHKD G + FA GLC
Sbjct: 259 FENTDSGSLTIEEFLATADESNEEPVSKHSPKSG-------EILCKHKDKGFEHFAHGLC 311
Query: 239 RSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSP 298
CY +F +S GLEGG+DPPAFQ AE++R+ A E ++ +E+ + Q+
Sbjct: 312 EKCYNKFTKLSGGLEGGSDPPAFQRAEKKRLEAAKRAEEAAAAKEAAL--EESLCDTQNS 369
Query: 299 EPESIGVPKNCTTQTASNE--GEG---DHTKTPGVDATTEASDGS---DNFSDIDDFEVD 350
E ES P+ + S++ EG D + E +G+ ++ SDIDD EVD
Sbjct: 370 EVESAMTPRKGLSGDKSSKMGSEGLINDSMPPKDPEEGGENCEGNADPESLSDIDDAEVD 429
Query: 351 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 410
GYLHNEEE YKKIIWEEMN+EYLEEQAAKEA A A
Sbjct: 430 GYLHNEEETQYKKIIWEEMNKEYLEEQAAKEALA------------------------AE 465
Query: 411 AAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 466
AA + +K++KR K+S PA+T EAT ML +K L SKIN +++L+
Sbjct: 466 LAARGIDPEAGKKKRKRNEGTKSSTPAETPAEATCNMLKRKGLGSKINVGAVDELY 521
>gi|356560345|ref|XP_003548453.1| PREDICTED: uncharacterized protein LOC100817609 [Glycine max]
Length = 604
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 242/475 (50%), Positives = 313/475 (65%), Gaps = 47/475 (9%)
Query: 7 ALNIGESDEIVHVAKR---FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 63
+ +G +DE H+A++ FY IA+ RNFT+GR++EQV A+CLY+A R
Sbjct: 82 SFGLGVNDE--HMAEQALTFYKIALERNFTRGRKSEQVHAACLYIAFR------------ 127
Query: 64 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 123
Y LGAV+LQLCQVL + + V K VDPS+F+H++T LL G+K V DTA
Sbjct: 128 -------YVLGAVFLQLCQVLRLGEHPIVQKPVDPSLFIHRYTKNLLKRGSKAVSDTALA 180
Query: 124 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 183
I+ASMKRDW+ TGRKPSGLCGAALY+SAL HG+K SK DI+KIVH+CEATL KRL+EFE+
Sbjct: 181 IVASMKRDWMQTGRKPSGLCGAALYISALAHGIKCSKPDILKIVHVCEATLTKRLVEFED 240
Query: 184 TDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHK-DTG-KPFACGLCRSC 241
T+S SLT+E+ KE HE +P G K ++LC+HK D+G FA GLC +C
Sbjct: 241 TESSSLTVEELNTMAKE-HEKNPTIMPEGGLKGCISKDLLCEHKEDSGVTHFALGLCEAC 299
Query: 242 YEEFMTISEGLEGGADPPAFQVAERERMVKA----SAEENSSFERESDSPFMSRVDKVQS 297
Y++F +S GL GG DPPAFQ AERER+ K S +E + S+ F S + + +
Sbjct: 300 YKDFDKLSGGLGGGLDPPAFQRAERERLKKTLPEESVDEACALANASNDQFKSHKEDLPA 359
Query: 298 PEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEE 357
PESIG A+ +G+ D + D S+ SDIDD EVD Y+H+EE
Sbjct: 360 YVPESIGAN---VEHEATKDGKYD---------DSHREDESETLSDIDDEEVDLYIHDEE 407
Query: 358 EKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVA 417
KH KKI+WE NREYLEEQAAKEAAAAA K A EA ++NC E + AA+ELAA++ AVA
Sbjct: 408 GKHIKKILWETANREYLEEQAAKEAAAAANKKAFEAKFENCSEDILAARELAASSIEAVA 467
Query: 418 KSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR----LSSKINYDVLEKLFDD 468
KSRKE +QKRA EAKN+ PAQ+A EA +M KKR L SK+N+++L +LFD+
Sbjct: 468 KSRKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKRNLQGLKSKVNFELLNELFDE 522
>gi|357508865|ref|XP_003624721.1| Transcription factor IIIB 90 kDa subunit [Medicago truncatula]
gi|355499736|gb|AES80939.1| Transcription factor IIIB 90 kDa subunit [Medicago truncatula]
Length = 608
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 235/502 (46%), Positives = 309/502 (61%), Gaps = 65/502 (12%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
M + +L + E D +V A+ FY IA+A+NFT+GR++EQV+A+CLYLA RQ KP+ LI
Sbjct: 77 MEYLSLSLGVSEGD-VVRQARAFYEIALAKNFTRGRKSEQVRAACLYLAFRQNKKPYFLI 135
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+FSN L INVYELG VYLQLC+VL + + V K +DPS++LHK+T LL N V T
Sbjct: 136 EFSNNLRINVYELGGVYLQLCEVLRLDNHPIVKKPIDPSLYLHKYTSNLLGHRNGVVSAT 195
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI----------------- 163
A +I+A M RDW+ TGRKP GL AALY SA HG K SK DI
Sbjct: 196 ALNIIAQMNRDWLQTGRKPGGLFAAALYTSANAHGHKVSKRDIGLILLVSSRALSHSVPH 255
Query: 164 ----------------VKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAA 207
+++ HICE T+ KRLIE+E TDS +LT+E+ A KE +E
Sbjct: 256 RLSSQTSAAIPSPVILLRLFHICEQTMNKRLIEYEMTDSSNLTVEELNAMAKE-NEKNPV 314
Query: 208 NLPNNGPKVSGMNEVLCKHKDTGKP-FACGLCRSCYEEFMTISEGLEGGADPPAFQVAER 266
+PN+ S ++C+HK+ P FA GLC +CY++F +S G GG DPPAFQ AE+
Sbjct: 315 VMPNSKFNGSTSTPLVCEHKEMEVPHFALGLCETCYKDFDKVSGGFGGGLDPPAFQRAEQ 374
Query: 267 ERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTP 326
ER+ K +++EN+ + S+S + + P S+ E D
Sbjct: 375 ERVKKTNSKENADVVKASNSACKGQKEDF----PASVL--------------ERD----- 411
Query: 327 GVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAA 386
D +TEA D S NFSDIDD EVD +L NEEEK Y+KIIWE NREYLEEQAAKEAAAAA
Sbjct: 412 --DTSTEAQDESGNFSDIDDQEVDAFLFNEEEKSYRKIIWENQNREYLEEQAAKEAAAAA 469
Query: 387 AKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRR 446
K EA+ +NCP ++EL + A+VAK+RKEK Q+RA +AK SGPAQ+A+EA +
Sbjct: 470 QKKIYEANLENCP---VESRELYESTTASVAKTRKEK-QRRAQQAKKSGPAQSAVEAACQ 525
Query: 447 MLTKKRLSSKINYDVLEKLFDD 468
M+ +K LS+K+N D KLF+D
Sbjct: 526 MVKRKGLSNKVNMDNFAKLFED 547
>gi|148909769|gb|ABR17974.1| unknown [Picea sitchensis]
Length = 746
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 253/541 (46%), Positives = 338/541 (62%), Gaps = 80/541 (14%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
+L++ ++ V+ R Y IAV RNFT+GRRT+QV A+CLY+ CRQ+ KPFLLIDFS+ L
Sbjct: 100 SLSVSGREDSVNAGHRLYIIAVERNFTRGRRTKQVAAACLYIVCRQEQKPFLLIDFSDVL 159
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-----VCDTA 121
INVY LGAV+LQLC++L + + K VDPS+F+H+F DRL+ + + +TA
Sbjct: 160 QINVYVLGAVFLQLCKLLRLEQHPIIQKPVDPSLFIHRFADRLVGRATTRKQFHSIANTA 219
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
ILASMKRDW+ TGRKPSG+CGAALY+SAL+HG +K+D+V IVHICE TL KRLIEF
Sbjct: 220 LRILASMKRDWMQTGRKPSGVCGAALYISALSHGFGCTKADVVSIVHICEGTLTKRLIEF 279
Query: 182 ENTDSGSLTIEDFMARKKELHEGV------AANLPNNGPKVSGMNEVLCKHKDTGKP-FA 234
ENTDSGSLTIE+F ++ KEL + A N G + G+ ++LC+HKDTG FA
Sbjct: 280 ENTDSGSLTIEEFESKAKELEAEMQTIKVPAINAETKG--IKGITDLLCEHKDTGSAHFA 337
Query: 235 CGLCRSCYEEFMTISEGLEGGADPPA-------------------------------FQV 263
GLC SCYEEF+ +S G++GG+ PPA +Q+
Sbjct: 338 HGLCHSCYEEFVKLSGGIQGGSAPPAFQRAEKQRKEDALHKKQDKLLFFDEEDEEDQYQI 397
Query: 264 A-------------ERERMV--KASAEENSSFERESDSPFMSRVDKVQ------------ 296
E+E+ + KA + N + + ++ +R + ++
Sbjct: 398 GTQKCFEDTARMETEKEKQLNQKAVQDGNPGSQEQENAEGSNRYENIKNLYRSTASKDGY 457
Query: 297 --SPEPES-IGVPKNCTTQTASN-EGEGD---HTKTPGVDATTEASDGS-DNFSDIDDFE 348
SP +S IG +C ++ + E D T+T ++ + D + SDIDD E
Sbjct: 458 ADSPNGDSQIGAVGSCLSEAVNGYRAEIDDWTQTQTQSINKVEDEMDEEIETLSDIDDEE 517
Query: 349 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQEL 408
V+ YLHN+EE K +IW EMN+EYLEEQAAKE A AAA+AA A+ EG A EL
Sbjct: 518 VERYLHNKEEVRLKTLIWTEMNKEYLEEQAAKEEAIAAAEAAHAAALAAAAEGAPDAVEL 577
Query: 409 AAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 468
AAAAAAAVAK +K+KQ+KRA E+KN PAQ+A EATR+MLTKK+LSSK+NYDVLEKLF+D
Sbjct: 578 AAAAAAAVAKLKKDKQRKRAEESKNKVPAQSAAEATRQMLTKKKLSSKVNYDVLEKLFED 637
Query: 469 S 469
+
Sbjct: 638 N 638
>gi|356570349|ref|XP_003553352.1| PREDICTED: uncharacterized protein LOC100789154 [Glycine max]
Length = 639
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 241/475 (50%), Positives = 313/475 (65%), Gaps = 49/475 (10%)
Query: 7 ALNIGESDEIVHVAKR---FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 63
+ +G +DE H+A++ FY IA+ RNFT+GR++EQV A+CLY+A R
Sbjct: 122 SFGLGVNDE--HMAEQALTFYKIALERNFTRGRKSEQVHAACLYIAFR------------ 167
Query: 64 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 123
Y LGAV+LQLCQVL + + V K VDPS+F+H++T LL G+K V DTA
Sbjct: 168 -------YVLGAVFLQLCQVLRLGEHPIVQKPVDPSLFIHRYTKNLLKRGSKAVSDTALA 220
Query: 124 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 183
I+ASMKRDW+ TGRKPSGLCGAALY+SAL HG+K SK DI+KIVH+CEATL KRL+EFE+
Sbjct: 221 IVASMKRDWMQTGRKPSGLCGAALYISALAHGIKCSKPDILKIVHVCEATLTKRLVEFED 280
Query: 184 TDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHK-DTG-KPFACGLCRSC 241
T+S SLT+E+ KE HE + +P G K ++LC+HK D+G FA GLC +C
Sbjct: 281 TESSSLTVEELNTMAKE-HEKNSMIMPGGGLKGCISKDLLCEHKEDSGVTHFALGLCEAC 339
Query: 242 YEEFMTISEGLEGGADPPAFQVAERERMVKA----SAEENSSFERESDSPFMSRVDKVQS 297
Y++F +S GL GG DPPAFQ AERER K S +E + S+ F S + + +
Sbjct: 340 YKDFDKLSGGLGGGLDPPAFQRAERERFKKTLPEESVDEACALANASNDQFKSHKEDLHA 399
Query: 298 PEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEE 357
PE V A+ +G+ D + D S+ SDIDD EVD Y+H+EE
Sbjct: 400 YVPERANV-----EHEATKDGKYD---------DSHREDESETLSDIDDEEVDLYIHDEE 445
Query: 358 EKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVA 417
KH KK++WE NREYLEEQAAKEAAAAA K A EA+++NC E L AA+ELAA++A AVA
Sbjct: 446 GKHIKKLLWETANREYLEEQAAKEAAAAANKKAFEANFENCSEDLLAARELAASSAEAVA 505
Query: 418 KSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR----LSSKINYDVLEKLFDD 468
KSRKE +QKRA EAKN+ PAQ+A EA +M KKR L SK+N+++L +LFD+
Sbjct: 506 KSRKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKRNLQGLKSKVNFELLNELFDE 560
>gi|413948296|gb|AFW80945.1| hypothetical protein ZEAMMB73_313717 [Zea mays]
gi|413948297|gb|AFW80946.1| hypothetical protein ZEAMMB73_313717 [Zea mays]
Length = 588
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 237/486 (48%), Positives = 303/486 (62%), Gaps = 54/486 (11%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+RQ+ N L++ + +V A RFY +AV RNFT+GRRT V A+CLY+ACRQ K +LLI
Sbjct: 79 IRQIVNNLHVSGGETVVSKAYRFYELAVDRNFTRGRRTSHVAAACLYIACRQSKKAYLLI 138
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL---------P 111
DFS+YL I+VY LGAV+LQLCQVL +AD V K VDPS+F+H+FT LL
Sbjct: 139 DFSDYLQISVYVLGAVFLQLCQVLLLADHPVVQKLVDPSLFIHRFTKCLLGRRDNAVSDT 198
Query: 112 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 171
+++V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DIV +VH+CE
Sbjct: 199 AFSREVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKADIVSVVHVCE 258
Query: 172 ATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGK 231
ATL KRLIEFENTDSGSLTIE+F+A E +E A++ PK SG E+LCKHK GK
Sbjct: 259 ATLTKRLIEFENTDSGSLTIEEFLATADEYNE---ASVSKYSPK-SG--EILCKHK--GK 310
Query: 232 P---FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPF 288
FA GLC C+ +F +S GLEGGA+PPAFQ AE +R+ A E ++ +E+
Sbjct: 311 DFEHFAHGLCEKCFNKFTKLSGGLEGGANPPAFQRAENKRLEAAKRAEEAAAVKEAAL-- 368
Query: 289 MSRVDKVQSPEPESIGVPKNCTT-QTASNEGEGD--HTKTPGVDA-----TTEASDGSDN 340
+ Q+ E ES PK + +S G G + P D E + ++
Sbjct: 369 EESLCDTQNSEIESTTTPKKALSGDKSSTIGSGGLINDSVPPKDPEEGGENCEGNADPES 428
Query: 341 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 400
SDIDD EVD YLHNEEE YKKIIWEEMN+EYLEEQAAKEA A
Sbjct: 429 LSDIDDVEVDWYLHNEEETQYKKIIWEEMNKEYLEEQAAKEALA---------------- 472
Query: 401 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 460
A AA + +K++KR + K+S PA T EAT ML +K L SKIN
Sbjct: 473 --------AELAARGIVVEEGKKKRKRNEDTKSSTPADTPAEATYNMLKRKGLGSKINEG 524
Query: 461 VLEKLF 466
+ +L+
Sbjct: 525 AVGELY 530
>gi|297814368|ref|XP_002875067.1| hypothetical protein ARALYDRAFT_346626 [Arabidopsis lyrata subsp.
lyrata]
gi|297320905|gb|EFH51326.1| hypothetical protein ARALYDRAFT_346626 [Arabidopsis lyrata subsp.
lyrata]
Length = 532
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 220/478 (46%), Positives = 284/478 (59%), Gaps = 93/478 (19%)
Query: 1 MRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 59
R +K+AL IG E D+++ A RF+ +A +NFTKGRRTE VQ+SCLYL CR+K PFLL
Sbjct: 78 FRNLKDALGIGDERDDVIDTAARFFEMATEQNFTKGRRTELVQSSCLYLTCREKKIPFLL 137
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK---- 115
IDFS+YL ++VYELG+VYLQLC++ Y+ N + VDPSIF+ +F + LL G +
Sbjct: 138 IDFSSYLRVSVYELGSVYLQLCEMFYLVQNGNYEELVDPSIFIPQFMNNLLKGAHNIAKN 197
Query: 116 ---KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
KV TA +I++SMKRDW+ TGRKPSG+CGAA+Y++AL+HG+ S++DI KIVH+CEA
Sbjct: 198 VLDKVLGTATNIISSMKRDWMQTGRKPSGICGAAIYIAALSHGIMCSRADIAKIVHMCEA 257
Query: 173 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKP 232
T+ KRL EF NT++ SLT+++ + L E + PN+ V V CKHKD K
Sbjct: 258 TITKRLDEFANTEAASLTVDELDKSENILREKPFSPRPNSDEGV-----VNCKHKDL-KR 311
Query: 233 FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRV 292
F GLC+SC++ FM IS G+ GG+DPPAFQ AE+ERM KA+ EEN
Sbjct: 312 FGFGLCKSCHDAFMKISGGVVGGSDPPAFQRAEKERMEKAAREEN--------------- 356
Query: 293 DKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPG-VDATTEASDGSDNFSDID-DFEVD 350
EG K+ G D EA D S N SD+D D EVD
Sbjct: 357 --------------------------EGAIEKSEGETDWDAEAPDESGNLSDLDGDAEVD 390
Query: 351 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 410
G NE+EK KI WE NR+YLE LE
Sbjct: 391 GCFLNEDEKLMTKISWELDNRDYLE-------------VNLE------------------ 419
Query: 411 AAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 468
AVAKSRKEK+QKRA EAKN+ P TA+EA RR++ +KRLS IN D L++L D+
Sbjct: 420 ----AVAKSRKEKRQKRAEEAKNAPPPATAMEAVRRIVKRKRLSG-INCDFLDELLDN 472
>gi|145361010|ref|NP_182035.2| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
gi|330255413|gb|AEC10507.1| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
Length = 557
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 215/473 (45%), Positives = 276/473 (58%), Gaps = 69/473 (14%)
Query: 1 MRQMKNALNIGES-DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 59
+ +++AL IG+ D+++ +A F+ IA+ NFTKGR E V +SCLYL CRQ LL
Sbjct: 78 LMNLRDALGIGDDRDDVIVMASNFFRIALDHNFTKGRSKELVFSSCLYLTCRQFKLAVLL 137
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVC 118
IDFS+YL ++VY+LG+VYLQLC +LYI + N K VDPSIF+ +F++ LL G N K+
Sbjct: 138 IDFSSYLRVSVYDLGSVYLQLCDMLYITENHNYEKLVDPSIFIPRFSNMLLKGAHNNKLV 197
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
TA I+ASMKRDW+ TGRKPSG+CGAALY +AL+HG+K SK+DIV IVHICEATL KRL
Sbjct: 198 LTATHIIASMKRDWMQTGRKPSGICGAALYTAALSHGIKCSKTDIVNIVHICEATLTKRL 257
Query: 179 IEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLC 238
IEF +T++ SLT ++ K E + AA P VLC H+D KP GLC
Sbjct: 258 IEFGDTEAASLTADEL--SKTEREKETAALRSKRKPNFYKEGVVLCMHQDC-KPVDYGLC 314
Query: 239 RSCYEEFMTISEGLEGGADPPAFQVAERERMV-KASAEENSSFERESDSPFMSRVDKVQS 297
SCY+EFMT+S GLEGG+DPPAFQ AE+ERM KAS+EEN
Sbjct: 315 ESCYDEFMTVSGGLEGGSDPPAFQRAEKERMEEKASSEEND------------------- 355
Query: 298 PEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEE 357
K +D SD S SD+DD E+D Y E
Sbjct: 356 --------------------------KQVNLDG---HSDESSTLSDVDDRELDCYFRTPE 386
Query: 358 EKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVA 417
E KI ++ N Y E++AAK+AA A A + A+ AA A
Sbjct: 387 EVRLVKIFFDHENPGYDEKEAAKKAAGLNA--------------CNNASNIFEASKAAAA 432
Query: 418 KSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSV 470
KSRKEK+Q+RA E KN+ P T +EA M+ +K+ IN D LE+LFD SV
Sbjct: 433 KSRKEKRQQRAEEEKNAPPPATGIEAVDSMVKRKKFRD-INCDYLEELFDASV 484
>gi|334184087|ref|NP_178237.3| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
gi|330250334|gb|AEC05428.1| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
Length = 548
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 216/474 (45%), Positives = 298/474 (62%), Gaps = 60/474 (12%)
Query: 1 MRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 59
+R +K+AL IG E D++V +A FY A+ +NFTKGRR E VQ+SCLYLAC
Sbjct: 73 LRNLKDALGIGDERDDVVDMAAVFYEAAMDQNFTKGRRAELVQSSCLYLAC--------- 123
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN---KK 116
+YL ++VYELG+VYLQLC++LY+ N + VDPSIF+ +FT+ LL G + K
Sbjct: 124 ----SYLRVSVYELGSVYLQLCEMLYLVQNKNYEELVDPSIFIPRFTNSLLKGAHAKAKD 179
Query: 117 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 176
V +TA++I++SMKRDWI TGRKPSG+CGAA+Y++AL+HG+ +S++DI K+VH+CEAT+ K
Sbjct: 180 VANTAKNIISSMKRDWIQTGRKPSGICGAAIYMAALSHGIMYSRADIAKVVHMCEATITK 239
Query: 177 RLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACG 236
RL EF NT++GSLT+++ ++ L + PN+ V V CKHKD K F G
Sbjct: 240 RLNEFANTEAGSLTVDELDESEEILRKETFTPRPNSDKGV-----VNCKHKDL-KRFGYG 293
Query: 237 LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQ 296
LC+SC+++F+ IS G+ GG+DPPA+Q AE+ERM KA+ EEN + ++
Sbjct: 294 LCKSCHDDFIIISGGVVGGSDPPAYQRAEKERMEKAAREENEG--------GIGNLN--- 342
Query: 297 SPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNE 356
E + V K + S +GEG+ T G + E SD SD SD DD EV+ L E
Sbjct: 343 --HDEQVNVSKR--AKKCSEKGEGE---TYGGERHAEYSDESDICSDDDDSEVEHVLLGE 395
Query: 357 EEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAV 416
+E K W N++YLEEQA KEAA AA NCPE A+ L A+ AAV
Sbjct: 396 DETRLKTTAWNLQNKDYLEEQAEKEAALKAA---------NCPED---ARNLVEASKAAV 443
Query: 417 AKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN-YDVLEKLFDDS 469
A SRKEK++KRA EAKN+ P+ TA EA+ + ++N + VL++L D S
Sbjct: 444 ANSRKEKRRKRAEEAKNAPPSATATEASYTE------TQRVNQHHVLDELLDTS 491
>gi|145353293|ref|XP_001420953.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|145357469|ref|XP_001422941.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581189|gb|ABO99246.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583185|gb|ABP01300.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 576
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 179/469 (38%), Positives = 262/469 (55%), Gaps = 71/469 (15%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++Q+ + L I +++V A R Y +AV RNFT+GRR QV +C+Y+ CRQ+S+P++LI
Sbjct: 97 IKQLADRLGIRPREDVVDAAHRLYKLAVQRNFTRGRRISQVAGACMYIICRQESRPYMLI 156
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCD 119
DF++ L NVY LG V+LQLC++L + + K +DPS+F+H+F D+L G V +
Sbjct: 157 DFADILQTNVYVLGGVFLQLCRLLRLEQHPLMQKPIDPSLFIHRFADKLNLGRRMHTVAN 216
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA ++ASMKRDW+ TGR+P+G+CGAAL+V+A HG SK D+V +VH+ E+TL KRL
Sbjct: 217 TALRLVASMKRDWMQTGRRPNGICGAALWVAAQIHGFSPSKRDVVAVVHVGESTLKKRLS 276
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGK--PFACGL 237
EFENT S +L+IE+F + + AN S M+ + C HKD FA G+
Sbjct: 277 EFENTPSAALSIEEFDTQARTFEAEEEANKNTKSLASSPMSVLSCVHKDNENIPHFAHGM 336
Query: 238 CRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQS 297
CR+CY +++ IS G GGADPPAF AE +R + A
Sbjct: 337 CRACYVDYVRISGGSVGGADPPAFMRAEAKRKIDAK------------------------ 372
Query: 298 PEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEE 357
+ + +P + + + +G K E ++ D SD+DD E+D Y+HNE
Sbjct: 373 ---QKLLLPALSSGELGDEDADGLVAK--------EDNEVIDTLSDVDDDEIDSYIHNEN 421
Query: 358 EKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVA 417
E + ++++W EMN+EYLE QA KE AA+ A + ++ P+ L
Sbjct: 422 EVNLRRLVWSEMNKEYLEFQALKEQAASRTSAPTKKKHRKAPDTL--------------- 466
Query: 418 KSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 466
PA+T EA R++L KK+ SSKINY+ LE LF
Sbjct: 467 ------------------PAETPAEAARQVLAKKKGSSKINYEALENLF 497
>gi|218196515|gb|EEC78942.1| hypothetical protein OsI_19387 [Oryza sativa Indica Group]
Length = 521
Score = 327 bits (839), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 204/473 (43%), Positives = 278/473 (58%), Gaps = 73/473 (15%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+RQ+ ++L++ D I+ +A R+Y +AV +NFT+GRRT V A+CLY+ACRQ K +LLI
Sbjct: 61 IRQIVSSLHVAGGDTIISMAHRYYTLAVDKNFTRGRRTTHVAAACLYIACRQSKKAYLLI 120
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
DFS++L I +V+ + C I Q+ S F+ +L
Sbjct: 121 DFSDHLQI------SVFAKFCYSRNI--------QLSKSSSTPAFSYIVLQ--------- 157
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
TGRKPSGLCGAALY++AL+HG ++K+DIV +VH+CEATL KRLIE
Sbjct: 158 -------------NTGRKPSGLCGAALYIAALSHGYDYTKADIVAVVHVCEATLTKRLIE 204
Query: 181 FENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRS 240
FENTDSGSLTIE+F+A+ E V P +G EVLCKHKD + FA GLC
Sbjct: 205 FENTDSGSLTIEEFLAKADE-QVLVTKISPKSG-------EVLCKHKDKAEHFAHGLCEK 256
Query: 241 CYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERES--DSPFMSRVDKVQ-- 296
CY +FM +S GLEGG+DPPAFQ AE++R+ A + ++ +E+ +S +R V+
Sbjct: 257 CYNKFMKLSGGLEGGSDPPAFQRAEKQRLEAAKNAKGTAASKEAALESVCEARESDVENN 316
Query: 297 -SPEPESIGVPKNCTTQTASNEGEGDHTKTP-GVDATTEASDGSDNFSDIDDFEVDGYLH 354
+ P++I K+ T + G+ T+ P G +A +G ++ SDIDD EVDGYLH
Sbjct: 317 ITTPPKNIIGDKHSTIPSVKVAGDSVATEDPEGEGKNDKADEGPESLSDIDDAEVDGYLH 376
Query: 355 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 414
NEEE YKKIIWEEMN+EYLEEQAAK A AA AA
Sbjct: 377 NEEETQYKKIIWEEMNKEYLEEQAAKAALAA-----------------------ELAARG 413
Query: 415 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 467
V + K K+++ + KN+ PAQT EAT+ ML +KRL SKIN + + KL++
Sbjct: 414 VVVEEGKRKRRRHNEDGKNATPAQTPAEATQNMLKRKRLGSKINDEAVNKLYN 466
>gi|413946301|gb|AFW78950.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
Length = 425
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 161/270 (59%), Positives = 203/270 (75%), Gaps = 9/270 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+RQ+ N L+I + IV A RFY +A+ RNFT+GRRT V A+CLY+ACRQ K +LLI
Sbjct: 79 IRQIVNNLHISGGETIVSKAFRFYELALDRNFTRGRRTTHVAAACLYIACRQSKKAYLLI 138
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
DFS++L I+VY LGAV+LQLCQVL +A+ V K VDPS+F+H+FT LL N V DT
Sbjct: 139 DFSDHLQISVYVLGAVFLQLCQVLQLAEHPVVQKLVDPSLFIHRFTKLLLGRRNNDVSDT 198
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DIV +VH+CEATL KRLIE
Sbjct: 199 ALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKADIVSVVHVCEATLTKRLIE 258
Query: 181 FENTDSGSLTIEDFMARKKELH-EGVAANLPNNGPKVSGMNEVLCKHKDTG-KPFACGLC 238
FENTDSGSLTIE+F+A E + E V+ + P +G E+LCKHKD G + FA GLC
Sbjct: 259 FENTDSGSLTIEEFLATADESNEEPVSKHSPKSG-------EILCKHKDKGFEHFAHGLC 311
Query: 239 RSCYEEFMTISEGLEGGADPPAFQVAERER 268
CY +F +S GLEGG+DPPAFQ AE++R
Sbjct: 312 EKCYNKFTKLSGGLEGGSDPPAFQRAEKKR 341
>gi|255078514|ref|XP_002502837.1| predicted protein [Micromonas sp. RCC299]
gi|226518103|gb|ACO64095.1| predicted protein [Micromonas sp. RCC299]
Length = 636
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 194/471 (41%), Positives = 269/471 (57%), Gaps = 39/471 (8%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
Q+ + L I ++I + A R Y +AV RNFT+GRRT+QV A+CLY+ CRQ+S+P++LIDF
Sbjct: 56 QVADRLGIRPREDIANAAHRLYKLAVQRNFTRGRRTQQVAAACLYIICRQESRPYMLIDF 115
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTA 121
S+ + NVY LGAV+LQLC++L + + K +DPS+F+H+F DRL G V +TA
Sbjct: 116 SDVVQTNVYVLGAVFLQLCRLLRLEQHPLISKPIDPSLFIHRFADRLTLGRKMHAVANTA 175
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
++ASMKRDW+ TGR+PSG+CGAAL+V+AL HG + SK D+V +VH+ EATL KR+ EF
Sbjct: 176 LRLVASMKRDWMQTGRRPSGVCGAALWVAALLHGYERSKRDVVAVVHVGEATLRKRVTEF 235
Query: 182 ENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKV---SGMNEVLCKHK--DTGKPFACG 236
ENT S L++E+F R K+ +E A L +G + G+ + C HK D FA G
Sbjct: 236 ENTPSAMLSVEEFDIRAKD-YEKEQAALAESGALLGAPGGITALTCIHKDHDGSTHFAHG 294
Query: 237 LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQ 296
+CR CY E+ +S G GG DPPAFQ AE A + +R +P +
Sbjct: 295 MCRQCYLEYARVSGGARGGEDPPAFQAAE--------ARRDREAQRALPAPQATLALPAP 346
Query: 297 SPEPESIGVPKNCTTQTASNEGEGD-HTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHN 355
+ + K + E E K G D + + FSD+DD E+D Y+H
Sbjct: 347 AAKKGKKMSAKEAREAMEAIEREARAKAKVKGEDEDEDTDAEPETFSDVDDEEIDNYIHT 406
Query: 356 EEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAA 415
EE +++IW E+NR+YLE QAAKEAA AAA AL G++
Sbjct: 407 AEEVKLRRVIWSELNRDYLETQAAKEAAVAAAPPAL--------PGIEGDGGKGGKKRKK 458
Query: 416 VAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 466
+ PA TA EA ++ML+ K++SSKINYD L LF
Sbjct: 459 YT---------------HQVPADTAAEAAQQMLSSKKISSKINYDALNDLF 494
>gi|302801496|ref|XP_002982504.1| hypothetical protein SELMODRAFT_421928 [Selaginella moellendorffii]
gi|300149603|gb|EFJ16257.1| hypothetical protein SELMODRAFT_421928 [Selaginella moellendorffii]
Length = 588
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 196/492 (39%), Positives = 277/492 (56%), Gaps = 92/492 (18%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + ++L++G D+IV A R Y +AV +NFTKGRRT QV A+CLY+ CR
Sbjct: 93 IRNIASSLSVGGGDDIVGSAHRIYVLAVEKNFTKGRRTSQVAAACLYIVCR--------- 143
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL----PGGNKK 116
Y LGAV+LQLC +L + V K VDPS+F+H+FTDRLL PG + K
Sbjct: 144 ----------YLLGAVFLQLCTLLRLDQHPMVQKPVDPSLFIHRFTDRLLHRIAPGTSSK 193
Query: 117 ----VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+ +TA I+ASMK+DWI TGR+PSG+CGAAL +S HGL+ S +D+ +V++C+A
Sbjct: 194 NQFAIANTALRIVASMKQDWIQTGRRPSGICGAALLLSTRIHGLECSTADVESVVYVCKA 253
Query: 173 TLMKRLIEFENTDSGSLTIEDFMA----RKKELHEGVAANLPNNGPKVSGMNEVLCKHKD 228
T+ KRL+EF NT++GSLT E+F A R+KE+ ++ NNG + E+LC+HKD
Sbjct: 254 TITKRLVEFSNTEAGSLTPEEFEAKAKQREKEMLSVSQTDIVNNGV----IKEILCEHKD 309
Query: 229 TG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA--ERERMVK---------ASAEE 276
+G + +A GLC++CY++F+ IS GL+GG+ PPAFQ A ERER++K A ++E
Sbjct: 310 SGAQHYAHGLCKNCYDDFVKISGGLQGGSAPPAFQRAQKERERLLKNKKRKLTAEAISDE 369
Query: 277 NSSFERESDSPFMSR-VDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEAS 335
+ + SP + + K E S + T ++E + + VD
Sbjct: 370 DEDLTCTNSSPVAEKAIKKKLEQEEHSYFDADDVTESCVTHETKAEKRYEDSVD------ 423
Query: 336 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 395
D ++ SDIDD EQ AKEAA A ++ A
Sbjct: 424 DEPESLSDIDD-----------------------------EQEAKEAALKAQAESMAA-- 452
Query: 396 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 455
+ + A AAA V SRK ++ K A N PA++A EATR+ML KKRLSS
Sbjct: 453 ------VSTSGTAAEIAAATVVMSRKARKHKHGDTA-NCKPAESAAEATRQMLEKKRLSS 505
Query: 456 KINYDVLEKLFD 467
K+NY VLEK+F+
Sbjct: 506 KLNYSVLEKMFN 517
>gi|297789078|ref|XP_002862547.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297308133|gb|EFH38805.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 420
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 157/284 (55%), Positives = 202/284 (71%), Gaps = 9/284 (3%)
Query: 1 MRQMKNALNIGES-DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 59
+ +++AL IG+ D+++ +A F+ A+ NFTKGRR+E V +SCLYL+CRQ LL
Sbjct: 78 LMNLRDALGIGDDRDDVIVMASNFFRTALDLNFTKGRRSELVLSSCLYLSCRQLKFAVLL 137
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK--- 116
I FS+YL ++VYELG+VYLQ C +LYI + N K VDPSIF+ +FT+ LL G ++K
Sbjct: 138 IHFSSYLRVSVYELGSVYLQFCDMLYITENHNYEKLVDPSIFIPRFTNMLLKGAHRKKVV 197
Query: 117 --VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
V DTA DI+ASMKRDW+ TGRKPSG+CGAALY +AL+HG+K SK+DIVKIVHICEATL
Sbjct: 198 GTVVDTATDIIASMKRDWMQTGRKPSGICGAALYTAALSHGIKCSKTDIVKIVHICEATL 257
Query: 175 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 234
KRLIEF NT++ S T ++ ++E + N P VLC H+D KP
Sbjct: 258 TKRLIEFGNTEAASFTADELSKTERERKKETELRSKRN-PISYKEGVVLCMHQDC-KPVD 315
Query: 235 CGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM-VKASAEEN 277
GLC+SCY+EFM +S GLEGG+DPPAFQ AE+ERM KAS EEN
Sbjct: 316 YGLCKSCYDEFMKVSGGLEGGSDPPAFQRAEKERMEEKASREEN 359
>gi|303283326|ref|XP_003060954.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457305|gb|EEH54604.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1016
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 134/275 (48%), Positives = 187/275 (68%), Gaps = 8/275 (2%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++Q+ + L I ++I A R Y +AV RNFT+GRRT+QV +CLY+ CRQ+S+P++LI
Sbjct: 101 IQQVADRLGIRPREDITGAAHRLYKLAVQRNFTRGRRTQQVAGACLYIVCRQESRPYMLI 160
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCD 119
DFS+ + NVY LGAV+LQLC++L + + K +DPS+F+H+F D+L G V +
Sbjct: 161 DFSDVVQTNVYVLGAVFLQLCRLLRLEQHPLISKPIDPSLFIHRFADKLNLGRRMHAVAN 220
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA ++ASMKRDW+ TGR+PSG+CGAAL+V+AL HG + SK D+V +VH+ EATL KR+
Sbjct: 221 TALRLVASMKRDWMQTGRRPSGVCGAALWVAALLHGYERSKRDVVAVVHVGEATLRKRVS 280
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKV----SGMNEVLCKHKD--TGKPF 233
EFENT S L+I++F AR K+L E A L ++G + + + C HKD F
Sbjct: 281 EFENTPSAQLSIDEFDARAKDL-EKEQAQLGDSGATLLLGDASTKTMTCVHKDHEGAAHF 339
Query: 234 ACGLCRSCYEEFMTISEGLEGGADPPAFQVAERER 268
A G+CR CY E+ +S G GG DPPAFQ AE+ R
Sbjct: 340 AHGMCRMCYVEYARVSGGSRGGEDPPAFQAAEQRR 374
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 23/127 (18%)
Query: 340 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCP 399
FSD+DD EV G++H EE +K+IW E+NR+YLE QAAKEA A+ P
Sbjct: 685 TFSDVDDDEVAGFIHTAEEVKLRKVIWSELNRDYLETQAAKEAIL--------AAAPKPP 736
Query: 400 EGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINY 459
G + A ++ PA TA EA ++ML+ K++SSKINY
Sbjct: 737 PGSEDADGKKKKQRKKYT---------------HATPADTAAEAAQQMLSSKKISSKINY 781
Query: 460 DVLEKLF 466
D L LF
Sbjct: 782 DALNDLF 788
>gi|357119379|ref|XP_003561419.1| PREDICTED: uncharacterized protein LOC100840180 [Brachypodium
distachyon]
Length = 721
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 184/392 (46%), Positives = 238/392 (60%), Gaps = 44/392 (11%)
Query: 86 IADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGA 145
+ DE V ++ ++ L + + LL + V DTA I+ASMKRDW+ TGRKPSGLCGA
Sbjct: 306 LTDERTVETPMELNVHL-RASVGLLGKRDNAVSDTALRIVASMKRDWMQTGRKPSGLCGA 364
Query: 146 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGV 205
ALY++AL+HG ++KSDIV +VHICEATL KRLIEFENTDSGSLTIED +A+ E
Sbjct: 365 ALYIAALSHGYNYTKSDIVAVVHICEATLTKRLIEFENTDSGSLTIEDVLAKADE----- 419
Query: 206 AANLPNNGP-KVSGMNEVLCKHKDTG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQV 263
P + P + SG EVLCKHKD + FA GLC CY +F+ +S GLEGGADPPAFQ
Sbjct: 420 --EQPVSKPSRKSG--EVLCKHKDKDIEHFAHGLCEKCYNKFIKMSGGLEGGADPPAFQR 475
Query: 264 AERERMVKASAEENSSFER-----ESDSPFMSR--VDKVQSPEPESIGVPKNCTTQTASN 316
AER+R+ A E ++ + ES+ + D + SP+ +IG K+ T + N
Sbjct: 476 AERQRLEAAKKSEEAAALKEAALGESNCEIQNSDVEDNIISPKKGAIG-DKSLTIPSEQN 534
Query: 317 EGEGDHTKTPGVDATTEASDGS-DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLE 375
+ +K P V D ++FSDIDD EVDGYLHNEEE HYKKIIWEEMN+EY+E
Sbjct: 535 ANDNIASKDPEVGGENSKPDADPESFSDIDDVEVDGYLHNEEETHYKKIIWEEMNKEYIE 594
Query: 376 EQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSG 435
EQAAKEA AA A G+ Q +K+++R + KN
Sbjct: 595 EQAAKEALAAELAAR--------GVGMGGGQ---------------QKKRRRNEDTKNLS 631
Query: 436 PAQTALEATRRMLTKKRLSSKINYDVLEKLFD 467
PA+T EAT ML +K L SKIN + + L++
Sbjct: 632 PAETPAEATYNMLKRKGLGSKINVEAVGGLYN 663
>gi|302772278|ref|XP_002969557.1| hypothetical protein SELMODRAFT_410325 [Selaginella moellendorffii]
gi|300163033|gb|EFJ29645.1| hypothetical protein SELMODRAFT_410325 [Selaginella moellendorffii]
Length = 507
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 138/274 (50%), Positives = 188/274 (68%), Gaps = 23/274 (8%)
Query: 4 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 63
+ ++L+I D+ V A R Y +AV ++FTKGRRT+QV A+CLY+ CRQ++KP+LLIDFS
Sbjct: 93 IADSLSISGRDDAVGAAHRLYVLAVEKSFTKGRRTQQVAAACLYIVCRQENKPYLLIDFS 152
Query: 64 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-------KK 116
+ L +NV +L + + + K VDPS+F+H+FTDRLL N
Sbjct: 153 DSLQVNV------------LLRLEEHPIMAKPVDPSLFIHRFTDRLLGLSNGSFGRKHHA 200
Query: 117 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 176
+ +TA I+ASMKRDWI TGRKPSG+CGAAL+VSA HG + SKSD+V +VH+C TL K
Sbjct: 201 IANTALRIVASMKRDWIQTGRKPSGVCGAALFVSAQIHGFECSKSDVVSVVHVCGDTLTK 260
Query: 177 RLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKP-FAC 235
RL+EF NT+SGSLT E+F A+ KEL + +P+ K + E+LC+HK+ G A
Sbjct: 261 RLVEFGNTESGSLTPEEFEAKAKELE--LQEPVPHVNFK-GHLTEILCEHKELGASHHAH 317
Query: 236 GLCRSCYEEFMTISEGLEGGADPPAFQVAERERM 269
GLCRSC++EFM +S GLEG ++PPAFQ AE++R
Sbjct: 318 GLCRSCFDEFMKVSGGLEGESNPPAFQRAEKKRF 351
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 438 QTALEATRRMLTKKRLSSKINYDVLEKLFD 467
++A EA RRML K+L S++N+DVL+KLFD
Sbjct: 394 KSAAEAARRMLEAKKLGSRVNFDVLDKLFD 423
>gi|308810665|ref|XP_003082641.1| transcription factor IIB (ISS) [Ostreococcus tauri]
gi|116061110|emb|CAL56498.1| transcription factor IIB (ISS) [Ostreococcus tauri]
Length = 728
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 132/270 (48%), Positives = 184/270 (68%), Gaps = 7/270 (2%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++Q+ + L I +++V A R Y +AV RNFT+GRR QV +CLY+ CRQ+S+P++LI
Sbjct: 93 IKQVADRLAIRPREDVVDAAHRLYKLAVQRNFTRGRRVSQVAGACLYIICRQESRPYMLI 152
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCD 119
DF++ L NVY LGAV+LQLC++L + + K +DPS+F+H+F D+L G V +
Sbjct: 153 DFADVLQTNVYVLGAVFLQLCRLLRLEQHPLMQKPIDPSLFIHRFADKLSLGRRMHTVAN 212
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA ++ASMKRDW+ TGR+P+G+CGAAL+V+A HG SK D+V +VH+ EATL KRL
Sbjct: 213 TALRLVASMKRDWMQTGRRPNGICGAALWVAAHIHGFNPSKRDVVAVVHVGEATLKKRLS 272
Query: 180 EFENTDSGSLTIEDF--MARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDT-GKP-FAC 235
EFENT S +L++E+F AR E+ E AN S M+ + C HKD+ P FA
Sbjct: 273 EFENTPSAALSVEEFDTQARTYEIEE--EANRTLKSLPSSSMSVLSCVHKDSENTPHFAH 330
Query: 236 GLCRSCYEEFMTISEGLEGGADPPAFQVAE 265
G+CRSCY +++ IS G GGADPPAF A+
Sbjct: 331 GMCRSCYIDYVRISGGSMGGADPPAFMRAK 360
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 33/131 (25%)
Query: 336 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 395
D D SD+DD E+D Y+H+E E ++++W E+N+EYLE QA KE A
Sbjct: 556 DYIDTLSDVDDDEIDSYIHDENEVKLRRVVWAELNKEYLEGQALKEQTPA---------- 605
Query: 396 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 455
+ P K++K+ A PA+T EA + L+KK+ SS
Sbjct: 606 RTLPS--------------------TSKRKKKVAVVP---PAETPAEAVHQALSKKKGSS 642
Query: 456 KINYDVLEKLF 466
KINY+VLE LF
Sbjct: 643 KINYEVLENLF 653
>gi|384247443|gb|EIE20930.1| cyclin-like protein [Coccomyxa subellipsoidea C-169]
Length = 496
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 125/264 (47%), Positives = 172/264 (65%), Gaps = 5/264 (1%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
Q+ + L I D+ V A R Y +A++RNFT+GRRT+ V A+CLY+ CRQ SKPF+LIDF
Sbjct: 95 QLVDRLRIAPRDDTVEAASRLYKLALSRNFTRGRRTQLVAAACLYIVCRQDSKPFMLIDF 154
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTA 121
S+ L +NV+ LGAV+L LC++L + + + VDPS++LH+F +RL V +TA
Sbjct: 155 SDALQVNVFTLGAVFLHLCKLLRLEEHPMFQRPVDPSLYLHRFANRLCVNDKFHAVTNTA 214
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
++ASMKRDW+ TGR+PSG+CGAAL+++A HG++ SK D+V IVH+ EATL KR+ EF
Sbjct: 215 LRLVASMKRDWMQTGRRPSGICGAALFIAAHIHGVEKSKRDVVNIVHVGEATLAKRVKEF 274
Query: 182 ENTDSGSLTIEDF--MARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTG--KPFACGL 237
T SG LTIE+F R E L G + C+H G + FA G+
Sbjct: 275 ALTTSGDLTIEEFEDEGRALEAQHRKELQLNTIGAPAPAHTKGGCQHLTAGAAQHFAHGM 334
Query: 238 CRSCYEEFMTISEGLEGGADPPAF 261
C+ CYEEF+ ++ G GADPPAF
Sbjct: 335 CKVCYEEFLEVTGGTSAGADPPAF 358
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 56/118 (47%), Gaps = 37/118 (31%)
Query: 352 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 411
YLH EE K++IW E+NRE+L+ Q+AK AA +A A PE +
Sbjct: 411 YLHTPEEAKLKELIWTELNREFLDCQSAKAAALESAAAKAR------PEDMLE------- 457
Query: 412 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 469
PA+T EATRRML K+LSSKINY+ L LF ++
Sbjct: 458 ------------------------PAETPEEATRRMLDAKKLSSKINYNALANLFSET 491
>gi|412991514|emb|CCO16359.1| predicted protein [Bathycoccus prasinos]
Length = 846
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 118/275 (42%), Positives = 181/275 (65%), Gaps = 7/275 (2%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ Q+ + L + ++I A R Y IAV+RNFT+GRRT QV +CLY+ CRQ+++P++LI
Sbjct: 96 INQIADRLAMKPREDITTSAHRLYKIAVSRNFTRGRRTAQVAGACLYVVCRQENRPYMLI 155
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCD 119
DFS+ L NVY LG V+LQLC+++ + + + +DPS+F+H+F D++ G V +
Sbjct: 156 DFSDVLQTNVYVLGGVFLQLCRLMRLEQHPLMQRPIDPSLFIHRFADKMNLGKRVHSVSN 215
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA ++ASMKRDW+ TGR+P+G+CGAAL+V++ HG SKSD+V IVHI E TL KR+
Sbjct: 216 TALRLVASMKRDWMQTGRRPAGICGAALWVASHVHGFDRSKSDVVSIVHIGEQTLKKRIT 275
Query: 180 EFENTDSGSLTIEDFMAR-KKELHEGVAANLPNNGPKVSGMNEVLCKHKD---TGKPFAC 235
EF +T + L++E+F A+ +K ++ + SG + CKH+D + F
Sbjct: 276 EFSSTPAALLSVEEFDAQAQKYENDDFIGSKEQQDLICSGSTTLTCKHRDDDNMPEHFQH 335
Query: 236 GLCRSCYEEFMTISEG--LEGGADPPAFQVAERER 268
G+CR+CY +++ +S G GG DPPAF A+++R
Sbjct: 336 GMCRACYIDYVKVSGGTTFLGGMDPPAFTAAQKKR 370
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 25/143 (17%)
Query: 327 GVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAA 385
GVD T + + D SDI+D +++ Y++N+E+ + K++IW EMN++YLE QAAKEAA+
Sbjct: 620 GVDTPTNDEEEMRDVCSDIEDEDINEYMNNQEQVNLKRVIWSEMNKDYLESQAAKEAASK 679
Query: 386 AAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATR 445
A AA+E +KE++ +RA A A+ A
Sbjct: 680 DA----------------AARESNQPPRRKYNTKKKEEKYQRAENA--------AVAAQT 715
Query: 446 RMLTKKRLSSKINYDVLEKLFDD 468
++ K+ +SSKINY+ L+ LFDD
Sbjct: 716 VLIKKRGVSSKINYEALQNLFDD 738
>gi|413948298|gb|AFW80947.1| hypothetical protein ZEAMMB73_313717 [Zea mays]
Length = 374
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 165/350 (47%), Positives = 209/350 (59%), Gaps = 45/350 (12%)
Query: 128 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSG 187
MKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DIV +VH+CEATL KRLIEFENTDSG
Sbjct: 1 MKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKADIVSVVHVCEATLTKRLIEFENTDSG 60
Query: 188 SLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKP---FACGLCRSCYEE 244
SLTIE+F+A E +E A++ PK SG E+LCKHK GK FA GLC C+ +
Sbjct: 61 SLTIEEFLATADEYNE---ASVSKYSPK-SG--EILCKHK--GKDFEHFAHGLCEKCFNK 112
Query: 245 FMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIG 304
F +S GLEGGA+PPAFQ AE +R+ A E ++ +E+ + Q+ E ES
Sbjct: 113 FTKLSGGLEGGANPPAFQRAENKRLEAAKRAEEAAAVKEAAL--EESLCDTQNSEIESTT 170
Query: 305 VPKNC-TTQTASNEGEGD--HTKTPGVDA-----TTEASDGSDNFSDIDDFEVDGYLHNE 356
PK + +S G G + P D E + ++ SDIDD EVD YLHNE
Sbjct: 171 TPKKALSGDKSSTIGSGGLINDSVPPKDPEEGGENCEGNADPESLSDIDDVEVDWYLHNE 230
Query: 357 EEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAV 416
EE YKKIIWEEMN+EYLEEQAAKEA A A AA +
Sbjct: 231 EETQYKKIIWEEMNKEYLEEQAAKEALA------------------------AELAARGI 266
Query: 417 AKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 466
+K++KR + K+S PA T EAT ML +K L SKIN + +L+
Sbjct: 267 VVEEGKKKRKRNEDTKSSTPADTPAEATYNMLKRKGLGSKINEGAVGELY 316
>gi|357117994|ref|XP_003560745.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like
[Brachypodium distachyon]
Length = 516
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/270 (46%), Positives = 164/270 (60%), Gaps = 57/270 (21%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ Q+ +L++G D I+ +A + Y +AV NFT+GRRT QV A+CLY+A RQ K +LLI
Sbjct: 79 IWQIVTSLHVGGGDTIIDMAHKIYTLAVDHNFTRGRRTTQVAAACLYIAVRQSKKAYLLI 138
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
DFS+YL I+VY LGAV+LQLCQVL +A+ V K +DPS+F+H+FT+R+ P
Sbjct: 139 DFSDYLKISVYVLGAVFLQLCQVLLLAEHPIVQKLIDPSLFIHRFTERIQP--------- 189
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
P+ ++KSDI +VHICEATL KRLIE
Sbjct: 190 ------------------PN-----------------YTKSDIFAVVHICEATLTKRLIE 214
Query: 181 FENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDT-GKPFACGLCR 239
FENTDSGSL IEDF+A+ E P++ EVLCKHKD + A GLC
Sbjct: 215 FENTDSGSLMIEDFLAKADE-------EQPSHKS-----GEVLCKHKDKDAEHLAHGLCE 262
Query: 240 SCYEEFMTISEGLEGGADPPAFQVAERERM 269
CY +F+ +S GLEGGADPPAFQ AE++R+
Sbjct: 263 KCYNKFIKMSGGLEGGADPPAFQQAEKQRL 292
>gi|307107018|gb|EFN55262.1| hypothetical protein CHLNCDRAFT_57908 [Chlorella variabilis]
Length = 861
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/270 (44%), Positives = 166/270 (61%), Gaps = 12/270 (4%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+ + L++ +E + A R Y +A+ R FT+GRRT QV A+C+YL CRQ SKPFLLIDF
Sbjct: 95 HLVDQLSVRPREESIEAAHRLYKLALQRGFTRGRRTNQVAAACVYLVCRQDSKPFLLIDF 154
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTA 121
S+ L INV+ LGAV+LQL ++L + + K VDPS+++H+F DRL G V +TA
Sbjct: 155 SDALQINVFTLGAVFLQLAKLLRLTEHPMFAKPVDPSLYIHRFADRLDFGRQMHAVANTA 214
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
++ASMKRDWI TGR+PSG+CGAA+Y++A HG + S D+V +VHI E TL KRL EF
Sbjct: 215 LRLVASMKRDWIQTGRRPSGICGAAIYIAAHIHGFERSVRDVVAVVHIGEHTLSKRLYEF 274
Query: 182 ENTDSGSLTIEDFMARKKELHEGVAANLPNNGP--KVSGMNEVLCKHKDTGKPFACGLCR 239
+T + + T ++F R K++ L P V + C+H +P A G+C
Sbjct: 275 SSTSASAYTADEFEERVKQIEADETERLEAAQPVEPVGLLESTGCEHLREWRP-AAGVCD 333
Query: 240 SCYEEFMTISEGLEGGADPPAFQVAERERM 269
S S G+ GA+PPAF R+ M
Sbjct: 334 S--------SGGVYNGANPPAFDRNRRKEM 355
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 333 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 392
E G D SDI D ++D YL ++ E K+ IW MNR++LE+QAAK AA AA+ A+
Sbjct: 575 EEEGGDDLLSDIGDSDIDMYLADDAEVKCKEEIWNMMNRDWLEKQAAKRAAQEAAERAVA 634
Query: 393 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 452
A V K K R A + PA+TA EA RML ++
Sbjct: 635 EQQAAQEAAEAAGVAYKRGRGRPVGS--KTKNHHRGAGMADLPPAETAQEAAMRMLDHRK 692
Query: 453 LSSKINYDVLEKLF 466
LS+KINY L LF
Sbjct: 693 LSNKINYSALADLF 706
>gi|224059412|ref|XP_002299842.1| predicted protein [Populus trichocarpa]
gi|222847100|gb|EEE84647.1| predicted protein [Populus trichocarpa]
Length = 264
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/164 (62%), Positives = 132/164 (80%)
Query: 28 VARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 87
V RNFTKGRRT+QVQA+CLY+ACR+ KP+LLIDFSNYL IN+Y LGAV+LQLC+VL +
Sbjct: 1 VERNFTKGRRTDQVQAACLYIACRENRKPYLLIDFSNYLQINIYVLGAVFLQLCKVLNLT 60
Query: 88 DESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAAL 147
+ + K +DPSIF+HK+T L G N+++ D A I+ASM W+ TGR+PS L GAAL
Sbjct: 61 EHAICQKLLDPSIFIHKYTASLSGGKNREISDDALTIIASMNHHWMQTGRRPSALWGAAL 120
Query: 148 YVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 191
Y+SA++HGL SKSDI+++VH+C TL KRLIEFENT+SGSLT+
Sbjct: 121 YISAISHGLNCSKSDILRLVHVCGKTLSKRLIEFENTESGSLTL 164
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 59/76 (77%)
Query: 376 EQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSG 435
EQ AKEAA A K A E ++KNCPE LQAA++L AA A +AKS+KE QQKRAAEA+NS
Sbjct: 173 EQEAKEAATATHKEAWEENFKNCPEDLQAARKLDAAVKADLAKSKKEMQQKRAAEARNSV 232
Query: 436 PAQTALEATRRMLTKK 451
PA++A EA RMLTKK
Sbjct: 233 PAKSAAEAVHRMLTKK 248
>gi|4262235|gb|AAD14528.1| putative transcription factor [Arabidopsis thaliana]
Length = 257
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 99/165 (60%), Positives = 133/165 (80%), Gaps = 3/165 (1%)
Query: 30 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 89
+NFTKGRR E VQ+SCLYLACR L IDFS+YL ++VYELG+VYLQLC++LY+
Sbjct: 3 QNFTKGRRAELVQSSCLYLACRDMKISLLFIDFSSYLRVSVYELGSVYLQLCEMLYLVQN 62
Query: 90 SNVLKQVDPSIFLHKFTDRLLPGGNKK---VCDTARDILASMKRDWITTGRKPSGLCGAA 146
N + VDPSIF+ +FT+ LL G + K V +TA++I++SMKRDWI TGRKPSG+CGAA
Sbjct: 63 KNYEELVDPSIFIPRFTNSLLKGAHAKAKDVANTAKNIISSMKRDWIQTGRKPSGICGAA 122
Query: 147 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 191
+Y++AL+HG+ +S++DI K+VH+CEAT+ KRL EF NT++GSLT+
Sbjct: 123 IYMAALSHGIMYSRADIAKVVHMCEATITKRLNEFANTEAGSLTL 167
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 18/91 (19%)
Query: 364 IIWEEMNREY---LEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSR 420
+I E+ RE+ LE++ +E AA NCPE A+ L A+ AAVA SR
Sbjct: 175 LISEQRKREWKKQLEKKTREELAA------------NCPED---ARNLVEASKAAVANSR 219
Query: 421 KEKQQKRAAEAKNSGPAQTALEATRRMLTKK 451
KEK++KRA EAKN+ P+ TA EA R L +K
Sbjct: 220 KEKRRKRAEEAKNAPPSATATEAVCRTLERK 250
>gi|403373133|gb|EJY86480.1| hypothetical protein OXYTRI_13619 [Oxytricha trifallax]
Length = 521
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 137/385 (35%), Positives = 211/385 (54%), Gaps = 25/385 (6%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A +G S IV +RF+ +A +NF +GR T+ V A CLY+ACR++ P LLIDFS+ L
Sbjct: 86 ASQLGMSQYIVEAGQRFFKLAYEKNFIQGRNTKHVAAVCLYIACRKEKTPHLLIDFSDVL 145
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDIL 125
NVY LG+VYL+L Q L++ + +DPSIF+H+F +L G + +V TA +L
Sbjct: 146 QTNVYILGSVYLKLVQRLFLE-----VPLIDPSIFIHRFCSKLEFEGKSHQVALTALRLL 200
Query: 126 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 185
+MKR WITTGR+P+GLCGAA+ ++A H K + IV++VH+CE T+ KRL EF+NT
Sbjct: 201 QTMKRAWITTGRRPNGLCGAAILIAARYHNYKRNIGQIVRVVHVCEETIRKRLDEFKNTR 260
Query: 186 SGSLTIEDFMARKKELHEGVAANLPN----NGPKVSGMN--EVLCKH---KDTGKP-FAC 235
+ LT ++F + ++ + +A N NG MN + H ++ P F
Sbjct: 261 TAQLTRDEFQSIEQGGRQSSSATNTNEQYQNGTNGQLMNIEKSPSNHSVEENMDPPSFTR 320
Query: 236 GLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKV 295
LC+ E + E L + AFQ+ ER++K + N S++ E P ++ +
Sbjct: 321 NLCKKKLEITEDMDE-LHKMLEEKAFQI--EERLMKYEGQRN-SYQEEVKQPMTPPINDM 376
Query: 296 QSPEPESIGVPKNCTTQTASNEGE---GDHTKTPGVDATTEASDGSDNFSDIDDFEVDGY 352
+ I +N N+ + D + E++DG + SDIDD E+D
Sbjct: 377 DL--YQQIDTSQNMLVPYQFNQPQIQIQDTNRLQMALKQFESNDGVETLSDIDDAEIDQL 434
Query: 353 LHNEEEKHYKKIIWEEMNREYLEEQ 377
+ EEE+ K I+W +NR+++ EQ
Sbjct: 435 ILTEEERKLKTILWNNLNRDWILEQ 459
>gi|168035366|ref|XP_001770181.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678558|gb|EDQ65015.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 166
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 128/165 (77%), Gaps = 1/165 (0%)
Query: 28 VARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 87
V RNFT+GR T +V +CLY+ CRQ++KP++LIDFS+ L NVY LGAV+LQLCQ+L +
Sbjct: 1 VERNFTRGRPTPRVAGACLYIVCRQENKPYMLIDFSDSLQTNVYVLGAVFLQLCQLLRLE 60
Query: 88 DESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAA 146
+ + VDPS+F+H+F DRL G V ++A ++ASMKRDW+ TGR+PSG+CGAA
Sbjct: 61 QHPIMQRPVDPSLFIHRFADRLQFGKKMHAVANSALRLVASMKRDWMQTGRRPSGVCGAA 120
Query: 147 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 191
L+++A HG + SK+D+V +VHICEATL KRL+EFE T+SGSLT+
Sbjct: 121 LFIAAHIHGFERSKADVVSVVHICEATLKKRLVEFEQTESGSLTV 165
>gi|355673453|gb|AER95177.1| BRF1-like protein, subunit of RNA polymerase III transcription
initiation factor IIIB [Mustela putorius furo]
Length = 610
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 151/474 (31%), Positives = 228/474 (48%), Gaps = 70/474 (14%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ +AV+++ T+GRR V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 47 FFKMAVSKHLTRGRRMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 106
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 141
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 107 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 161
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----- 196
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 162 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFMKIDLEG 221
Query: 197 --------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 242
R K+L + ++ L + ++S + + + +P A G S
Sbjct: 222 ECDPPSYTAGQRKLRMKQLEQVLSKKLEDVEGEISSYQDAIESELENSRPKAKGTLASLT 281
Query: 243 EE--FMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEP 300
+ + L G DP E E + A++ N F RE +S ++ P
Sbjct: 282 RDGSVEDSASSLFGEEDP------EDEELQAAASHLNKDFYRELLGAGVSSSSG-EAGGP 334
Query: 301 ESIGVPKNCTT-----QTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDG 351
E P + TA++ G D + + + T DG + S IDD E+D
Sbjct: 335 EGGSRPPALESLLGPLPTAASLGISDSIRECISSQSQEPTGARGDGELDLSGIDDLEIDR 394
Query: 352 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 411
Y+ NE E K +W N EYL EQ KEA A K EL
Sbjct: 395 YILNEAEARVKAELWMRENAEYLREQREKEARIAKEK------------------ELGIY 436
Query: 412 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
KE + K++ + + A TA EA +ML +K++SSKINY VL+ L
Sbjct: 437 ---------KEHKPKKSCKRREPIQASTAGEAIEKMLEQKKISSKINYSVLQDL 481
>gi|41054023|ref|NP_956192.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIBa [Danio rerio]
gi|28422474|gb|AAH46877.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Danio rerio]
gi|182889790|gb|AAI65640.1| Brf1 protein [Danio rerio]
Length = 661
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 157/473 (33%), Positives = 232/473 (49%), Gaps = 82/473 (17%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
FY +A++++ TKGR++ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 111 FYKMALSKHLTKGRKSTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLVLAR 170
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPS 140
L I + +DP +++ +F +LL G K +V TA +L MKRDW+ TGR+PS
Sbjct: 171 ELCINAPA-----IDPCLYIPRFA-QLLEFGEKSHEVSMTALRLLQRMKRDWMHTGRRPS 224
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKE 200
GLCGAAL V+A H + + +++ +V +CEATL KRL EFE+T + LTIE+FM K +
Sbjct: 225 GLCGAALLVAARMHEFRRTIKEVISVVKVCEATLRKRLYEFEDTPTSELTIEEFM--KTD 282
Query: 201 LHE-----GVAANLPNN---------GPKVSGMNEVLCKHKD-------TGKPFACGLCR 239
L + AA L KV + +C ++D + +P A G+
Sbjct: 283 LEQECDPPSFAAGLRKQKLKQIEQELAKKVDDIEGEICGYQDEIEVELESCRPKARGIYA 342
Query: 240 SCYEE----FMTISEGLEGGAD---PPAFQVAERERMVKASAEENSSFERESDSPFMSRV 292
SC E + S L+G D A + + E S +R S S + +
Sbjct: 343 SCSREDDVVSLASSSHLDGEDDELRAAASHLYGENEEQEQDGERVSLTKRPSLSLLLGAL 402
Query: 293 DKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGY 352
P S+G+ ++ T E + EA G + S ID+ E+D Y
Sbjct: 403 -----PTSASLGLSESITKMGEEKEND------------VEAEGGELDLSGIDEDEIDRY 445
Query: 353 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAA 412
+ N++E K +W N +YL+EQ KE A K E +YK
Sbjct: 446 ILNDKEVKVKTELWMIQNADYLKEQKEKEERIAKEKE--EGTYKE--------------- 488
Query: 413 AAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
RK ++ R E N A TA EA +ML +KR+S+KINYDVL+ L
Sbjct: 489 -------RKPRKSTRRREPIN---ANTADEAIEKMLEQKRISTKINYDVLKDL 531
>gi|395861901|ref|XP_003803212.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Otolemur garnettii]
Length = 651
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 153/495 (30%), Positives = 236/495 (47%), Gaps = 70/495 (14%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+++ T+GRR V A+CLYL CR + P +L+
Sbjct: 66 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRRMAHVTAACLYLVCRTEGTPHMLL 123
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 124 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 178
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 179 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 238
Query: 180 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 220
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 239 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 298
Query: 221 EVLCKHKDTGKPFACGLCRSCYEE--FMTISEGLEGGADPPAFQVAERERMVKASAEENS 278
+ + + +P A G S ++ + L G + E E + A++ N
Sbjct: 299 DAIEIELENSRPKAKGALASLTKDGPVEDTTSSLLG------EEDTEDEELEAAASHLNK 352
Query: 279 SFERE---SDSPFMSRV-----DKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDA 330
F +E S++P S ++ P ES+ P +E + + D
Sbjct: 353 DFYQELLGSNTPGSSEAAGSPEGVIRPPALESLLGPLPTAASLGISESIRECISSQSRDP 412
Query: 331 TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA 390
T DG + S IDD E+D Y+ NE E K +W + N EYL EQ+ KEA A K
Sbjct: 413 TDTCGDGELDLSGIDDHEIDRYILNEAEARVKAELWMKENAEYLREQSEKEARIAKEK-- 470
Query: 391 LEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTK 450
EL KE + K++ + + A TA EA +ML +
Sbjct: 471 ----------------ELGIY---------KEHKPKKSCKRREPIQASTAGEAIEKMLEQ 505
Query: 451 KRLSSKINYDVLEKL 465
K++SSKINY VL L
Sbjct: 506 KKISSKINYSVLRDL 520
>gi|395861899|ref|XP_003803211.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Otolemur garnettii]
Length = 678
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 153/495 (30%), Positives = 236/495 (47%), Gaps = 70/495 (14%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+++ T+GRR V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRRMAHVTAACLYLVCRTEGTPHMLL 150
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 180 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 220
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 266 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 325
Query: 221 EVLCKHKDTGKPFACGLCRSCYEE--FMTISEGLEGGADPPAFQVAERERMVKASAEENS 278
+ + + +P A G S ++ + L G + E E + A++ N
Sbjct: 326 DAIEIELENSRPKAKGALASLTKDGPVEDTTSSLLG------EEDTEDEELEAAASHLNK 379
Query: 279 SFERE---SDSPFMSRV-----DKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDA 330
F +E S++P S ++ P ES+ P +E + + D
Sbjct: 380 DFYQELLGSNTPGSSEAAGSPEGVIRPPALESLLGPLPTAASLGISESIRECISSQSRDP 439
Query: 331 TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA 390
T DG + S IDD E+D Y+ NE E K +W + N EYL EQ+ KEA A K
Sbjct: 440 TDTCGDGELDLSGIDDHEIDRYILNEAEARVKAELWMKENAEYLREQSEKEARIAKEK-- 497
Query: 391 LEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTK 450
EL KE + K++ + + A TA EA +ML +
Sbjct: 498 ----------------ELGIY---------KEHKPKKSCKRREPIQASTAGEAIEKMLEQ 532
Query: 451 KRLSSKINYDVLEKL 465
K++SSKINY VL L
Sbjct: 533 KKISSKINYSVLRDL 547
>gi|70608137|ref|NP_082469.2| transcription factor IIIB 90 kDa subunit [Mus musculus]
gi|148686622|gb|EDL18569.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae) [Mus musculus]
Length = 676
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 151/473 (31%), Positives = 228/473 (48%), Gaps = 70/473 (14%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 113 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 172
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 141
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 173 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 227
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----- 196
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 228 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEE 287
Query: 197 --------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 242
R K+L + ++ L ++S + + + +P A G +
Sbjct: 288 ECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGALANLS 347
Query: 243 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERE---SDSPFMSRVDKVQSPE 299
++ G + + P + E E + A++ N F RE D + D
Sbjct: 348 KD----GSGEDATSSPRCEEDTEDEELEAAASHMNKDFYRELLGDDDGSEAAGDPDGGSR 403
Query: 300 P---ESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGY 352
P ES+ P TA++ G D + +P D + DG + S IDD E+D Y
Sbjct: 404 PLALESLLGP----LPTAASLGISDSIRECISSPSGDPKDSSGDGELDLSGIDDLEIDRY 459
Query: 353 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAA 412
+ NE E K +W N EYL EQ KEA A K EL
Sbjct: 460 ILNESEARVKAELWMRENAEYLREQKEKEARIAKEK------------------ELGIY- 500
Query: 413 AAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 501 --------KEHKPKKSCKRREPILASTAGEAIEKMLEQKKISSKINYSVLRDL 545
>gi|71153596|sp|Q8CFK2.1|TF3B_MOUSE RecName: Full=Transcription factor IIIB 90 kDa subunit;
Short=TFIIIB90; Short=mTFIIIB90; AltName: Full=B-related
factor 1; Short=BRF-1
gi|23512360|gb|AAH37224.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae) [Mus musculus]
Length = 676
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 151/473 (31%), Positives = 228/473 (48%), Gaps = 70/473 (14%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 113 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 172
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 141
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 173 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 227
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----- 196
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 228 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEE 287
Query: 197 --------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 242
R K+L + ++ L ++S + + + +P A G +
Sbjct: 288 ECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGALANLS 347
Query: 243 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERE---SDSPFMSRVDKVQSPE 299
++ G + + P + E E + A++ N F RE D + D
Sbjct: 348 KD----GSGEDATSSPRCEEDTEDEELEAAASHMNKDFYRELLGDDDGSEAAGDPDGGSR 403
Query: 300 P---ESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGY 352
P ES+ P TA++ G D + +P D + DG + S IDD E+D Y
Sbjct: 404 PLALESLLGP----LPTAASLGISDSIRECISSPSGDPKDSSGDGELDLSGIDDLEIDRY 459
Query: 353 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAA 412
+ NE E K +W N EYL EQ KEA A K EL
Sbjct: 460 ILNESEARVKAELWMRENAEYLREQKEKEARIAKEK------------------ELGIY- 500
Query: 413 AAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 501 --------KEHKPKKSCKRREPILASTAGEAIEKMLEQKKISSKINYSVLRDL 545
>gi|351698489|gb|EHB01408.1| Transcription factor IIIB 90 kDa subunit [Heterocephalus glaber]
Length = 638
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 154/476 (32%), Positives = 227/476 (47%), Gaps = 75/476 (15%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ +A ++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 74 FFKMAANKSLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 133
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 141
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 134 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 188
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----- 196
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 189 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEE 248
Query: 197 --------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 242
R K+L + ++ L ++S + + + +P A R
Sbjct: 249 ECDPPSYTAGQRKLRMKQLEQVLSKQLEEVEGEISSYQDAIENELENSRPKA----RGAL 304
Query: 243 EEFMTISEGLEGGADPPAF--QVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEP 300
F +GL F + AE E + A++ N F RE D V+SPE
Sbjct: 305 ANFS--KDGLIEDTTSSVFGEEDAEDEELEAAASHMNKDFYRELLGGGSGSSDAVESPEE 362
Query: 301 -------ESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEV 349
ES+ P TA++ G D + +P D + DG + S IDD E+
Sbjct: 363 GGQPLALESLLGP----LPTAASLGISDSIRECISSPSRDPKDTSGDGELDLSGIDDLEI 418
Query: 350 DGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELA 409
D Y+ NE E K +W N EYL EQ KEA A K EL
Sbjct: 419 DRYILNEAEARVKAELWMRENAEYLREQREKEARIAKEK------------------ELG 460
Query: 410 AAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
KE + K++ + + A +A EA +ML +K++SSKINY VL L
Sbjct: 461 IY---------KEHKPKKSCKRREPIQASSAREAIEKMLEQKKISSKINYSVLRDL 507
>gi|297696024|ref|XP_002825220.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Pongo abelii]
Length = 650
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 154/495 (31%), Positives = 235/495 (47%), Gaps = 71/495 (14%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 66 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 123
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 124 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 178
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 179 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 238
Query: 180 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 220
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 239 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 298
Query: 221 EVLCKHKDTGKPFACGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERERMVKASAEENS 278
+ + + +P A G S ++ T + L G + E E + A++ N
Sbjct: 299 DAIEIELENSRPKAKGGLASLAKDGSTEDTTSSLCG------EEDTEDEELEAAASHLNK 352
Query: 279 SFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTK----TPGVDA 330
RE + SPE P ++G + TA++ G D + + D
Sbjct: 353 DLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQSSDP 411
Query: 331 TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA 390
+ DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 412 KDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK-- 469
Query: 391 LEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTK 450
EL KE + K++ + + A TA EA +ML +
Sbjct: 470 ----------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQ 504
Query: 451 KRLSSKINYDVLEKL 465
K++SSKINY VL L
Sbjct: 505 KKISSKINYSVLRGL 519
>gi|338753410|ref|NP_001229717.1| transcription factor IIIB 90 kDa subunit isoform 6 [Homo sapiens]
gi|397470869|ref|XP_003807034.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 3 [Pan
paniscus]
gi|56270588|gb|AAH86856.1| BRF1 protein [Homo sapiens]
Length = 650
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 153/494 (30%), Positives = 234/494 (47%), Gaps = 69/494 (13%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 66 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 123
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 124 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 178
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 179 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 238
Query: 180 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 220
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 239 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 298
Query: 221 EVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEE-NSS 279
+ + + +P A G S ++ T E A + + ++A+A N
Sbjct: 299 DAIEIELENSRPKAKGGLASLAKDGST-----EDTASSLCGEEDTEDEELEAAASHLNKD 353
Query: 280 FERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTK----TPGVDAT 331
RE + SPE P ++G + TA++ G D + + D
Sbjct: 354 LYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQSSDPK 412
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 391
+ DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 413 DASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK--- 469
Query: 392 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 451
EL KE + K++ + + A TA EA +ML +K
Sbjct: 470 ---------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQK 505
Query: 452 RLSSKINYDVLEKL 465
++SSKINY VL L
Sbjct: 506 KISSKINYSVLRGL 519
>gi|395746383|ref|XP_002825219.2| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Pongo abelii]
Length = 677
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 154/495 (31%), Positives = 235/495 (47%), Gaps = 71/495 (14%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 180 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 220
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 266 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 325
Query: 221 EVLCKHKDTGKPFACGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERERMVKASAEENS 278
+ + + +P A G S ++ T + L G + E E + A++ N
Sbjct: 326 DAIEIELENSRPKAKGGLASLAKDGSTEDTTSSLCG------EEDTEDEELEAAASHLNK 379
Query: 279 SFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTK----TPGVDA 330
RE + SPE P ++G + TA++ G D + + D
Sbjct: 380 DLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQSSDP 438
Query: 331 TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA 390
+ DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 439 KDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK-- 496
Query: 391 LEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTK 450
EL KE + K++ + + A TA EA +ML +
Sbjct: 497 ----------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQ 531
Query: 451 KRLSSKINYDVLEKL 465
K++SSKINY VL L
Sbjct: 532 KKISSKINYSVLRGL 546
>gi|224034963|gb|ACN36557.1| unknown [Zea mays]
Length = 195
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 98/161 (60%), Positives = 123/161 (76%), Gaps = 5/161 (3%)
Query: 51 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 110
RQ K +LLIDFS++L I+VY LGAV+LQLCQVL +A+ V K VDPS+F+H+FT LL
Sbjct: 5 RQSKKAYLLIDFSDHLQISVYVLGAVFLQLCQVLQLAEHPVVQKLVDPSLFIHRFTKLLL 64
Query: 111 PGG--NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 168
G N V DTA I+ASMKRDW+ T RKPSGLCGAALY++AL+HG ++K+DIV +VH
Sbjct: 65 GLGRRNNDVSDTALRIVASMKRDWMQTRRKPSGLCGAALYIAALSHGCNYTKADIVSVVH 124
Query: 169 ICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANL 209
+CEATL KRLIEFENTDSGSLT+ + M K L + + +L
Sbjct: 125 VCEATLTKRLIEFENTDSGSLTLMNLM---KSLFQNIRPSL 162
>gi|22035556|ref|NP_001510.2| transcription factor IIIB 90 kDa subunit isoform 1 [Homo sapiens]
gi|397470867|ref|XP_003807033.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2 [Pan
paniscus]
gi|20455319|sp|Q92994.1|TF3B_HUMAN RecName: Full=Transcription factor IIIB 90 kDa subunit;
Short=TFIIIB90; Short=hTFIIIB90; AltName: Full=B-related
factor 1; Short=BRF-1; Short=hBRF; AltName: Full=TAF3B2;
AltName: Full=TATA box-binding protein-associated
factor, RNA polymerase III, subunit 2
gi|1737205|gb|AAB38876.1| TFIIB related factor hBRF [Homo sapiens]
gi|119602316|gb|EAW81910.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_d
[Homo sapiens]
gi|261857828|dbj|BAI45436.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [synthetic construct]
gi|410213426|gb|JAA03932.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
gi|410254028|gb|JAA14981.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
gi|410306454|gb|JAA31827.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
gi|410332909|gb|JAA35401.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
Length = 677
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 153/494 (30%), Positives = 234/494 (47%), Gaps = 69/494 (13%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 180 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 220
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 266 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 325
Query: 221 EVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEE-NSS 279
+ + + +P A G S ++ T E A + + ++A+A N
Sbjct: 326 DAIEIELENSRPKAKGGLASLAKDGST-----EDTASSLCGEEDTEDEELEAAASHLNKD 380
Query: 280 FERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTK----TPGVDAT 331
RE + SPE P ++G + TA++ G D + + D
Sbjct: 381 LYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQSSDPK 439
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 391
+ DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 440 DASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK--- 496
Query: 392 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 451
EL KE + K++ + + A TA EA +ML +K
Sbjct: 497 ---------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQK 532
Query: 452 RLSSKINYDVLEKL 465
++SSKINY VL L
Sbjct: 533 KISSKINYSVLRGL 546
>gi|348554704|ref|XP_003463165.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Cavia porcellus]
Length = 650
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 153/479 (31%), Positives = 228/479 (47%), Gaps = 81/479 (16%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ +AV ++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 86 FFKMAVNKSLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 145
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 141
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 146 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQCMKRDWMHTGRRPSG 200
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----- 196
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 201 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEG 260
Query: 197 --------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 242
R K+L + ++ L ++S + + + +P A G
Sbjct: 261 ECDPPSYTAGQRKLRMKQLEQVLSKQLEEVEGEISSYQDAIEIELENSRPKARG------ 314
Query: 243 EEFMTISEGLEGGADPPAFQV-----AERERMVKASAEENSSFERESDSPFMSRVDKVQS 297
+S+ +G + + AE E + A++ N F RE D V+
Sbjct: 315 -ALANLSK--DGSVEDTTSSIFGEEDAEDEELEAAASHMNKDFYRELLGGGSGSSDAVEI 371
Query: 298 PEP-------ESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDD 346
PE ES+ P TA++ G D + +P D + DG + S IDD
Sbjct: 372 PEEGGHPLALESLLGP----LPTAASLGISDSIRECISSPNRDPKDASGDGELDLSGIDD 427
Query: 347 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 406
E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 428 LEIDRYILNEAEARVKAELWMRENAEYLREQREKEARIAKEK------------------ 469
Query: 407 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
EL KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 470 ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRDL 519
>gi|348554702|ref|XP_003463164.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Cavia porcellus]
Length = 677
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 153/479 (31%), Positives = 228/479 (47%), Gaps = 81/479 (16%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ +AV ++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 113 FFKMAVNKSLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 172
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 141
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 173 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQCMKRDWMHTGRRPSG 227
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----- 196
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 228 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEG 287
Query: 197 --------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 242
R K+L + ++ L ++S + + + +P A G
Sbjct: 288 ECDPPSYTAGQRKLRMKQLEQVLSKQLEEVEGEISSYQDAIEIELENSRPKARG------ 341
Query: 243 EEFMTISEGLEGGADPPAFQV-----AERERMVKASAEENSSFERESDSPFMSRVDKVQS 297
+S+ +G + + AE E + A++ N F RE D V+
Sbjct: 342 -ALANLSK--DGSVEDTTSSIFGEEDAEDEELEAAASHMNKDFYRELLGGGSGSSDAVEI 398
Query: 298 PEP-------ESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDD 346
PE ES+ P TA++ G D + +P D + DG + S IDD
Sbjct: 399 PEEGGHPLALESLLGP----LPTAASLGISDSIRECISSPNRDPKDASGDGELDLSGIDD 454
Query: 347 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 406
E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 455 LEIDRYILNEAEARVKAELWMRENAEYLREQREKEARIAKEK------------------ 496
Query: 407 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
EL KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 497 ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRDL 546
>gi|196016326|ref|XP_002118016.1| hypothetical protein TRIADDRAFT_62066 [Trichoplax adhaerens]
gi|190579403|gb|EDV19499.1| hypothetical protein TRIADDRAFT_62066 [Trichoplax adhaerens]
Length = 583
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 142/465 (30%), Positives = 225/465 (48%), Gaps = 80/465 (17%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ + RF+ +AV + T+GR+T V A+CLY+ CR + +L+DFS+ L +NVY LG
Sbjct: 103 IDMGYRFFKMAVNKRLTRGRKTSHVVAACLYIVCRVED---MLLDFSDILQVNVYVLGKT 159
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITT 135
YL++ L I + +DP +++H+F ++L G VC A ++A MKRDW+
Sbjct: 160 YLRITAALSIN-----IPAIDPCLYIHRFANKLEFGDKTHDVCMMALRLVARMKRDWMHH 214
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+PSGLCGA L VSA HG +K I+++V +CEATL KRL EFE T S LTI++F
Sbjct: 215 GRRPSGLCGAGLLVSARLHGYNRTKKQIIRVVRVCEATLRKRLGEFEETPSAKLTIDEF- 273
Query: 196 ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGG 255
+K +L E P + K + L E I E LE
Sbjct: 274 -QKIDLEE-------EQDPPSFTQSRKRAKQFQEDPVISTDLAG----EVQAIQEELE-- 319
Query: 256 ADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVD----KVQSPEPESIGVPKNCTT 311
+V E++R+++ + N E+ + P ++ + ++ P P T
Sbjct: 320 ------KVLEKKRLLEDVEQSNQEEEKRDNIPVLNSTNSYCTRLSGPLP---------TV 364
Query: 312 QTASNEGEGDHTKTPGVDATTEASDGS--DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEM 369
+T +TP + AT E +D ++ S +DD E++ YL +E+E K +W E
Sbjct: 365 ETVCG-------RTPSL-ATQEFNDKGVEEDLSYVDDDEINEYLLDEKEVEIKTKVWTEE 416
Query: 370 NREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAA 429
N++YL Q K + ++ + PE + ++ +
Sbjct: 417 NKDYLTAQLEK-------ASRIDKDSNDKPESKKRKRKYKRNQLIS-------------- 455
Query: 430 EAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSVCLYS 474
PA + EA +ML +K++SSKINY+VL L + + C S
Sbjct: 456 ------PANSVGEAIEKMLAEKKISSKINYEVLRDLTETNACTTS 494
>gi|194225425|ref|XP_001494856.2| PREDICTED: transcription factor IIIB 90 kDa subunit, partial [Equus
caballus]
Length = 620
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 154/476 (32%), Positives = 229/476 (48%), Gaps = 74/476 (15%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 56 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 115
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 141
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 116 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 170
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----- 196
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 171 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFMKIDLEE 230
Query: 197 --------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 242
R KEL + ++ L ++S + + + +P A G S
Sbjct: 231 ECDPPSYTAGQRKLRMKELEQVLSKQLEEVEGEISSYQDAIEIELENSRPKAKGALAS-- 288
Query: 243 EEFMTISEGLEGGADPP-AFQVAERERMVKASAEENSSFERE---SDSPFMSRVD----- 293
+T +E A + AE E + A++ N F RE S +P S
Sbjct: 289 ---LTKDGSVEDTASSLFGEEDAEDEELEAAASHLNKDFYRELLGSGNPGSSEAGGSPEA 345
Query: 294 KVQSPEPESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEV 349
+ P ES+ P TA++ G D + + D + DG + S IDD E+
Sbjct: 346 GSRPPALESLLGP----LPTAASLGISDSIRECISSQSRDPKDASGDGELDLSGIDDLEI 401
Query: 350 DGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELA 409
D Y+ NE E K +W N EYL EQ KEA A K EL
Sbjct: 402 DRYILNEAEARVKAELWMRENAEYLREQREKEARIAKEK------------------ELG 443
Query: 410 AAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 444 IY---------KEHKPKKSCKRREPIQASTAGEAIEKMLEQKKISSKINYSVLRDL 490
>gi|338753408|ref|NP_001229716.1| transcription factor IIIB 90 kDa subunit isoform 5 [Homo sapiens]
gi|332843232|ref|XP_510208.3| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2 [Pan
troglodytes]
gi|397470865|ref|XP_003807032.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1 [Pan
paniscus]
gi|119602317|gb|EAW81911.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_e
[Homo sapiens]
gi|194380648|dbj|BAG58477.1| unnamed protein product [Homo sapiens]
Length = 562
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 150/470 (31%), Positives = 225/470 (47%), Gaps = 69/470 (14%)
Query: 26 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 85
+AV+R+ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 86 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 144
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 145 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA-------- 196
AAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 116 AALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECD 175
Query: 197 -----------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEF 245
R K+L + ++ L ++S + + + +P A G S ++
Sbjct: 176 PPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDG 235
Query: 246 MT--ISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPE---- 299
T + L G + E E + A++ N RE + SPE
Sbjct: 236 STEDTASSLCG------EEDTEDEELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGR 289
Query: 300 PESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHN 355
P ++G + TA++ G D + + D + DG + S IDD E+D Y+ N
Sbjct: 290 PPALGSLLD-PLPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRYILN 348
Query: 356 EEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAA 415
E E K +W N EYL EQ KEA A K EL
Sbjct: 349 ESEARVKAELWMRENAEYLREQREKEARIAKEK------------------ELGIY---- 386
Query: 416 VAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 387 -----KEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 431
>gi|402877360|ref|XP_003902397.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Papio anubis]
Length = 650
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 152/498 (30%), Positives = 234/498 (46%), Gaps = 77/498 (15%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 66 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 123
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 124 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 178
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 179 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 238
Query: 180 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 220
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 239 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 298
Query: 221 EVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQV-----AERERMVKASAE 275
+ + + +P A G S + +G A+ A + E E + A++
Sbjct: 299 DAIEIELENSRPKAKGGLASLAK---------DGSAEDTASSLCGEEDTEDEELEAAASH 349
Query: 276 ENSSFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTKTPGVDAT 331
N RE + +PE P ++G + TA++ G D +
Sbjct: 350 LNKDLYRELLGGTPGSSEATGNPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQC 408
Query: 332 TEASDGSD----NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAA 387
++ D S + S IDD E+D Y+ NE E K +W N EYL EQ KEA A
Sbjct: 409 SDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKE 468
Query: 388 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 447
K EL KE + K++ + + A TA EA +M
Sbjct: 469 K------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKM 501
Query: 448 LTKKRLSSKINYDVLEKL 465
L +K++SSKINY VL L
Sbjct: 502 LEQKKISSKINYSVLRGL 519
>gi|189238877|ref|XP_973702.2| PREDICTED: similar to transcription factor IIIB 90 kDa subunit
(TFIIIB90) [Tribolium castaneum]
Length = 617
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 158/473 (33%), Positives = 231/473 (48%), Gaps = 62/473 (13%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ Q+ N L + + + A F+ +A+ RN TKGR+ V A+C+YL CR + LLI
Sbjct: 94 ITQLCNQLQLNQ--HCIDTACNFFKMALNRNLTKGRKNTHVHAACVYLTCRTEGTAHLLI 151
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 119
D S+ L I YELG YL+L Q L I + VDP +++ +F +L G ++V +
Sbjct: 152 DISDVLQICCYELGRTYLKLSQALSIN-----IPAVDPCLYILRFAAKLEFGSKTQQVAN 206
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA ++ MKRD I +GR+PSGLCGAAL ++A H S SDIVKIV + E+TL KRLI
Sbjct: 207 TALRLVQRMKRDSIHSGRRPSGLCGAALLIAARLHEFGRSASDIVKIVKVHESTLRKRLI 266
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCR 239
EF +T S +LT+E+FM V + P + KD + L R
Sbjct: 267 EFGDTPSSALTLEEFMT--------VDLEEEQDPPSFKA-----ARKKDKER-----LQR 308
Query: 240 SCYEEFMTISE-----GLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDK 294
EE +I+E ++ D ++ER + +E + F RES ++++ +
Sbjct: 309 LMEEEAESITELQQEIEMQLNRDAKMKSRKKKERDTE-EIQETNRFIRESTMGTINQIIQ 367
Query: 295 VQSPE-PESIGVP-KNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGY 352
++ E PE P K AS T + D F DIDD E+D Y
Sbjct: 368 EEAIEDPEIAKEPVKELGPDIASMGLASSLEDTSNAVQPPQPLDVDMTFDDIDDEELDSY 427
Query: 353 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAA 412
+ +E E K IW + N +LEEQ K E LQ +E
Sbjct: 428 IMSEHESQNKNAIWLKRNAAFLEEQKIK------------------AEKLQKERE----- 464
Query: 413 AAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
+ + EK+++R K GP +A EA ++L +K++SSKINYDVL+ L
Sbjct: 465 -----EGKPEKKKRRNVRRKPIGPTNSAGEAIEKILQEKKISSKINYDVLKSL 512
>gi|380812142|gb|AFE77946.1| transcription factor IIIB 90 kDa subunit isoform 1 [Macaca mulatta]
Length = 677
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 152/498 (30%), Positives = 234/498 (46%), Gaps = 77/498 (15%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 180 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 220
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 266 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 325
Query: 221 EVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQV-----AERERMVKASAE 275
+ + + +P A G S + +G A+ A + E E + A++
Sbjct: 326 DAIEIELENSRPKAKGGLASLAK---------DGSAEDTASSLCGEEDTEDEELEAAASH 376
Query: 276 ENSSFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTKTPGVDAT 331
N RE + +PE P ++G + TA++ G D +
Sbjct: 377 LNKDLYRELLGGTPGSSEATGNPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQC 435
Query: 332 TEASDGSDN----FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAA 387
++ D S + S IDD E+D Y+ NE E K +W N EYL EQ KEA A
Sbjct: 436 SDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKE 495
Query: 388 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 447
K EL KE + K++ + + A TA EA +M
Sbjct: 496 K------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKM 528
Query: 448 LTKKRLSSKINYDVLEKL 465
L +K++SSKINY VL L
Sbjct: 529 LEQKKISSKINYSVLRGL 546
>gi|390469562|ref|XP_003734142.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa
subunit [Callithrix jacchus]
Length = 681
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 151/497 (30%), Positives = 235/497 (47%), Gaps = 75/497 (15%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 180 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 220
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 266 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 325
Query: 221 EVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEE-NSS 279
+ + ++ +P A G S ++ +E A + + ++A+A N
Sbjct: 326 DAIEIELESSRPKAKGGLASLAKDG-----SVEDTASSLCGEEDTEDEELEAAASHLNKD 380
Query: 280 FERE--SDSPFMSRVDKVQSPEPESIGVPKNCTT-----QTASNEGEGDHTKTPGVDATT 332
RE +P S + P+ G P + TA++ G D + ++
Sbjct: 381 LYRELLGATPGSSEA----AGSPQGSGRPPALQSLLDPLPTAASLGISDSIRECISSQSS 436
Query: 333 EASDGSDN----FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 388
+ D S + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 437 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 496
Query: 389 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 448
EL KE + K++ + + A TA EA +ML
Sbjct: 497 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 529
Query: 449 TKKRLSSKINYDVLEKL 465
+K++SSKINY VL L
Sbjct: 530 EQKKISSKINYSVLRGL 546
>gi|383408305|gb|AFH27366.1| transcription factor IIIB 90 kDa subunit isoform 1 [Macaca mulatta]
gi|384946668|gb|AFI36939.1| transcription factor IIIB 90 kDa subunit isoform 1 [Macaca mulatta]
Length = 677
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 152/498 (30%), Positives = 234/498 (46%), Gaps = 77/498 (15%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 180 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 220
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 266 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 325
Query: 221 EVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQV-----AERERMVKASAE 275
+ + + +P A G S + +G A+ A + E E + A++
Sbjct: 326 DAIEIELENSRPKAKGGLASLAK---------DGSAEDTASSLCGEEDTEDEELEAAASH 376
Query: 276 ENSSFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTKTPGVDAT 331
N RE + +PE P ++G + TA++ G D +
Sbjct: 377 LNKDLYRELLGGTPGSSEATGNPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQC 435
Query: 332 TEASDGSDN----FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAA 387
++ D S + S IDD E+D Y+ NE E K +W N EYL EQ KEA A
Sbjct: 436 SDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKE 495
Query: 388 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 447
K EL KE + K++ + + A TA EA +M
Sbjct: 496 K------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKM 528
Query: 448 LTKKRLSSKINYDVLEKL 465
L +K++SSKINY VL L
Sbjct: 529 LEQKKISSKINYSVLRGL 546
>gi|297592086|gb|ADI46871.1| BFR1f [Volvox carteri f. nagariensis]
Length = 835
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 162/299 (54%), Gaps = 54/299 (18%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
AL I S E + R Y +A+ R FT+GRR QV A CLY+ CR + +P++LIDFS++L
Sbjct: 98 ALRISPSSEAIEAGHRLYRLALQRGFTRGRRVNQVAAVCLYIFCRLERRPYMLIDFSDHL 157
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGG--NKKVCDTARD 123
++NVY LGAV+L + ++L + + + K +DPS+F+++F DRL LP KV TA
Sbjct: 158 SVNVYGLGAVFLDMLRLLRLEEHATFTKPIDPSLFMNRFVDRLRLPTQELRTKVGYTATR 217
Query: 124 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 183
++ SMKRDW+ TGR+P+G+CGAAL+++A HG++ +K DI+ IVH+ T+ +R++E
Sbjct: 218 LVQSMKRDWMLTGRRPNGICGAALFLAAHIHGVEKTKMDIIAIVHVGWGTVERRVMELAE 277
Query: 184 TDSGSLTIEDFMARKK------------------ELHEGVAANLPNNGPKVS-------- 217
T LT+++ R K E + + PN +++
Sbjct: 278 TGGAELTLKEIEERDKASDLERVWNDGTNEKMLLEYERAASEDAPNRQRQLTWPASSSDA 337
Query: 218 ----------GMNEVL----------CKHKDTGKP-FACGLCRSCYEEF----MTISEG 251
G V+ C+H G P A G+CR C +E+ MT+ EG
Sbjct: 338 TVASGSAEGDGSAPVVMIQPDAAGRCCEHVRAGSPLLAHGMCRECLQEYLQVTMTVQEG 396
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 29/148 (19%)
Query: 321 DHTKTPGVDATTEASDG--SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQA 378
D G D + DG SD+ SDI D EVDGYL EE ++ +W EMNR+++E Q
Sbjct: 592 DAAVAAGRDVVDKGGDGHSSDHLSDIHDDEVDGYLATNEEASVRRQLWLEMNRDWVELQE 651
Query: 379 AKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQ 438
AK+AA AA A +A+ +++ +K+A A+
Sbjct: 652 AKKAAEAAED-----------------------KRAGLARPKRKYLRKKA----EVPAAE 684
Query: 439 TALEATRRMLTKKRLSSKINYDVLEKLF 466
A ATR +L K+LS+KINY L LF
Sbjct: 685 DAAGATRNLLASKKLSNKINYGALADLF 712
>gi|297592169|gb|ADI46953.1| BFR1m [Volvox carteri f. nagariensis]
Length = 826
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 159/286 (55%), Gaps = 43/286 (15%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
AL I S E + R Y +A+ R FT+GRR QV A CLY+ CR + +P++LIDFS++L
Sbjct: 98 ALRISPSSEAIEAGHRLYRLALQRGFTRGRRVNQVAAVCLYIFCRLERRPYMLIDFSDHL 157
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGG--NKKVCDTARD 123
++NVY LGAV+L + ++L + + + K +DPS+F+++F DRL LP KV TA
Sbjct: 158 SVNVYGLGAVFLDMLRLLRLEEHATFTKPIDPSLFMNRFVDRLRLPTQELRTKVGYTATR 217
Query: 124 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 183
++ SMKRDW+ TGR+P+G+CGAAL+++A HG++ +K DI+ IVH+ T+ +R++E
Sbjct: 218 LVQSMKRDWMLTGRRPNGICGAALFLAAHIHGVEKTKMDIIAIVHVGWGTVERRVMELAE 277
Query: 184 TDSGSLTIEDFMARKK-----------ELHEGVAANLPNNGPKVS--------------- 217
T LT+++ R K E + PN +++
Sbjct: 278 TGGAELTLKEIEERDKASDLEREKMLLEYERAAIEDAPNRQRQLTWPASSSDATVASGSA 337
Query: 218 ---GMNEVL----------CKHKDTGKP-FACGLCRSCYEEFMTIS 249
G V+ C+H G P A G+CR C +E++ ++
Sbjct: 338 EGDGSAPVVMMQPDATGRCCEHVRAGSPLLAHGMCRECLQEYLQVT 383
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 29/148 (19%)
Query: 321 DHTKTPGVDATTEASDG--SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQA 378
D G D + DG SD+ SDI D EVDGYL EE ++ +W EMNR+++E Q
Sbjct: 583 DAAVAAGRDVVDKGGDGHSSDHLSDIHDDEVDGYLATNEEASVRRQLWLEMNRDWVELQE 642
Query: 379 AKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQ 438
AK+AA AA A +A+ +++ +K+A A+
Sbjct: 643 AKKAAEAAED-----------------------KRAGLARPKRKYLRKKA----EVPAAE 675
Query: 439 TALEATRRMLTKKRLSSKINYDVLEKLF 466
A ATR +L K+LS+KINY L LF
Sbjct: 676 DAAGATRNLLASKKLSNKINYGALADLF 703
>gi|402877358|ref|XP_003902396.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Papio anubis]
Length = 677
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 152/498 (30%), Positives = 234/498 (46%), Gaps = 77/498 (15%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 180 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 220
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 266 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 325
Query: 221 EVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQV-----AERERMVKASAE 275
+ + + +P A G S + +G A+ A + E E + A++
Sbjct: 326 DAIEIELENSRPKAKGGLASLAK---------DGSAEDTASSLCGEEDTEDEELEAAASH 376
Query: 276 ENSSFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTKTPGVDAT 331
N RE + +PE P ++G + TA++ G D +
Sbjct: 377 LNKDLYRELLGGTPGSSEATGNPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQC 435
Query: 332 TEASDGSDN----FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAA 387
++ D S + S IDD E+D Y+ NE E K +W N EYL EQ KEA A
Sbjct: 436 SDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKE 495
Query: 388 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 447
K EL KE + K++ + + A TA EA +M
Sbjct: 496 K------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKM 528
Query: 448 LTKKRLSSKINYDVLEKL 465
L +K++SSKINY VL L
Sbjct: 529 LEQKKISSKINYSVLRGL 546
>gi|403284473|ref|XP_003933594.1| PREDICTED: transcription factor IIIB 90 kDa subunit [Saimiri
boliviensis boliviensis]
Length = 623
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 153/501 (30%), Positives = 235/501 (46%), Gaps = 83/501 (16%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 39 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 96
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 97 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 151
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 152 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 211
Query: 180 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 220
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 212 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 271
Query: 221 EVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQV-----AERERMVKASAE 275
+ + + +P A G + + +G A+ A V E E + A++
Sbjct: 272 DAIEIELENSRPKAKGGLANLAK---------DGSAEDTASSVCGEEDTEDEELEAAASH 322
Query: 276 ENSSFERE--SDSPFMSRVDKVQSPEPESIGVPKNCTT-----QTASNEGEGDHTKTPGV 328
N RE +P S + P+ G P + TA++ G D +
Sbjct: 323 LNKDLYRELLGATPGSSEA----AGSPQWSGRPPALESLLDPLPTAASLGISDSIRECIS 378
Query: 329 DATTEASDGSDN----FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 384
+++ D S + S IDD E+D Y+ NE E K +W N EYL EQ KEA
Sbjct: 379 SQSSDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARI 438
Query: 385 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 444
A K EL KE + K++ + + A TA EA
Sbjct: 439 AKEK------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAI 471
Query: 445 RRMLTKKRLSSKINYDVLEKL 465
+ML +K++SSKINY VL L
Sbjct: 472 EKMLEQKKISSKINYSVLRGL 492
>gi|432940985|ref|XP_004082772.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Oryzias
latipes]
Length = 684
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 146/482 (30%), Positives = 232/482 (48%), Gaps = 69/482 (14%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A FY +A+ + T G R+ V A+CLYL CR + P +L+D S+ L +NVY LG V
Sbjct: 107 LDTAFNFYKMALNKRLTNGHRSSHVIAACLYLVCRTEGTPHMLLDLSDVLQVNVYVLGKV 166
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 135
+L L + L I + +DP +++ +F L G N V TA ++ MKRDW+ T
Sbjct: 167 FLHLAKELCINAPA-----IDPCLYIPRFAQMLEFGEKNHDVSMTAMRLVQRMKRDWMHT 221
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+PSGLCGAAL VSA H + ++V +V +CE+TL KRL EFE+T + LT+E+FM
Sbjct: 222 GRRPSGLCGAALLVSAHMHDFCRTVKEVVNVVKVCESTLRKRLTEFEDTPTSKLTVEEFM 281
Query: 196 -------------------ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACG 236
+ ++L + + +P+ ++ G + + ++ +P G
Sbjct: 282 RVDLDEECDPPSYTAGLKKTKTQQLEKQLMEKMPDVEDEIKGYQDEIDAELESLRPKLKG 341
Query: 237 LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQ 296
+ + Y SE + ++ + ++A A F+++ D+ + + K++
Sbjct: 342 V-YAAYVNRDLSSEDIRSMLSQQDDNQSDEDEELRAVARH---FDKDLDTLTVEALIKLE 397
Query: 297 SPEPE-----SIGVPKNCTTQTASNEGEGDHTKTPGVDATT--------EASDGSDNFSD 343
PE + +P+ AS G T G+ + E DG + S
Sbjct: 398 QKTPEEENECGMKIPERVGPSLASILGTMPSAATLGLPESINKCTGEERENGDGELDLSG 457
Query: 344 IDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQ 403
IDD E++ YL +E E K +W N +YL+EQ KEA A K
Sbjct: 458 IDDSEIELYLLSESEIKIKTALWMAENSDYLKEQKEKEAKIAKEK--------------- 502
Query: 404 AAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLE 463
EL KEK+ K + + ++ A TA EA +ML +K++S+KINYDVL+
Sbjct: 503 ---ELGIY---------KEKKPKSSGKKRSQIRASTADEAIGKMLEQKKISTKINYDVLK 550
Query: 464 KL 465
L
Sbjct: 551 DL 552
>gi|927598|gb|AAC50170.1| TFIIIB 90 kDa subunit [Homo sapiens]
gi|1581601|prf||2116442A transcription factor IIIB
Length = 675
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 148/480 (30%), Positives = 218/480 (45%), Gaps = 85/480 (17%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+ S+ L +NVY LG +L L +
Sbjct: 113 FFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLVLSDLLQVNVYVLGKTFLLLAR 172
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 141
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR PSG
Sbjct: 173 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRGPSG 227
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKEL 201
LCG AL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM K +L
Sbjct: 228 LCGGALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFM--KIDL 285
Query: 202 HEGVAANLPNNGP---KVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTI----SEGLEG 254
E G ++ + +VL K + + S Y++ + I S G
Sbjct: 286 EEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEI-----SSYQDAIEIELENSRPKRG 340
Query: 255 GADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESI-GVPKNCTTQT 313
G P + R+ + Q PE I G P C Q
Sbjct: 341 GLQPGKRWLHRGHRV---------QLVWRGGHRGRGAGSRGQPPEQRLIPGAPWWCPRQL 391
Query: 314 ASNEGEGDHTKTPGVDA---------------------TTEASDGSD-------NFSDID 345
S+ +TP + + ++++SD D + S ID
Sbjct: 392 GSSRKPRVGRQTPALGSLLDPLPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGID 451
Query: 346 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 405
D E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 452 DLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK----------------- 494
Query: 406 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
EL KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 495 -ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 544
>gi|119602312|gb|EAW81906.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_a
[Homo sapiens]
Length = 699
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 154/517 (29%), Positives = 235/517 (45%), Gaps = 93/517 (17%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 180 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 220
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 266 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 325
Query: 221 EVLCKHKDTGKPFACGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERERMVKASAEENS 278
+ + + +P A G S ++ T + L G + E E + A++ N
Sbjct: 326 DAIEIELENSRPKAKGGLASLAKDGSTEDTASSLCG------EEDTEDEELEAAASHLNK 379
Query: 279 SFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTK----TPGVDA 330
RE + SPE P ++G + TA++ G D + + D
Sbjct: 380 DLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQSSDP 438
Query: 331 TTEASDGSDNFSDIDDFEVD----------------------GYLHNEEEKHYKKIIWEE 368
+ DG + S IDD E+D Y+ NE E K +W
Sbjct: 439 KDASGDGELDLSGIDDLEIDRRDLSMPRCAKAKSQPHFPVLAQYILNESEARVKAELWMR 498
Query: 369 MNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA 428
N EYL EQ KEA A K EL KE + K++
Sbjct: 499 ENAEYLREQREKEARIAKEK------------------ELGIY---------KEHKPKKS 531
Query: 429 AEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
+ + A TA EA +ML +K++SSKINY VL L
Sbjct: 532 CKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 568
>gi|374107864|gb|AEY96771.1| FAEL213Wp [Ashbya gossypii FDAG1]
Length = 571
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 150/498 (30%), Positives = 246/498 (49%), Gaps = 49/498 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++ + +AL I E + A ++Y +A++ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 89 LQAVSHALQIPEY--VREAAFQWYQLALSNNFVQGRRSQNVIAACLYVACRKEKTHHMLI 146
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS+ L ++VY +GA +L++ +VL+I L DPS+F+ F ++L G K KV
Sbjct: 147 DFSSRLQVSVYSIGATFLKMVKVLHIVK----LPLADPSLFIQHFAEKLDLGDKKIKVVK 202
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + +M +DW+ GR+P+G+ GA L ++ + L+ + S++V + H+ E TL +RL
Sbjct: 203 DAVKLAQTMSKDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEVVAVSHVAEETLQQRLN 262
Query: 180 EFENTDSGSLTIEDFMA-----------------RKKELHE------GVAANLPNNGPKV 216
EF+NT SG+L+I+ F R+ L E G A +L + +
Sbjct: 263 EFKNTKSGNLSIKQFRDTSTEEEVQQSDSKPPSFRRNRLKETKLKEKGPAEHLETSDQAL 322
Query: 217 SG---MNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGL-EGGADPPAFQVAERERMVKA 272
+ +++VL + T K L + +S+ +G +D P ++ +
Sbjct: 323 ARNPILSQVLGGQEVTSKEVLFYLKQISERRERALSKRRDQGNSDSPDAHSQAGDKRSRG 382
Query: 273 SAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATT 332
A S +E + SR+D S E S G + +T H +
Sbjct: 383 DA-SGSDYEDQDG----SRLDSDASSE-HSQGQIDGYSLETDPYRPRNLHLLPTSESLLS 436
Query: 333 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAAK 388
+ SD +N D+DD E++ ++ +EE K+ IW +N EYL EQ +K EA A+
Sbjct: 437 KVSDDPENLEDVDDEELEAHILDEEASKLKERIWIGINGEYLLEQESKRLKLEADLASGN 496
Query: 389 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 448
+L+ + A+ L A AAA + Q AEA SG TA E+ + ML
Sbjct: 497 TSLKKKRSSKKRKTDASNLLPEALAAADPTGIQPALQ--VAEA--SGDLTTA-ESVKNML 551
Query: 449 TKKRLSSKINYDVLEKLF 466
K S KINYD ++ LF
Sbjct: 552 QKTSFSKKINYDAIDGLF 569
>gi|45190394|ref|NP_984648.1| AEL213Wp [Ashbya gossypii ATCC 10895]
gi|44983290|gb|AAS52472.1| AEL213Wp [Ashbya gossypii ATCC 10895]
Length = 571
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 150/498 (30%), Positives = 245/498 (49%), Gaps = 49/498 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++ + +AL I E + A ++Y +A++ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 89 LQAVSHALQIPEY--VREAAFQWYQLALSNNFVQGRRSQNVIAACLYVACRKEKTHHMLI 146
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS+ L ++VY +GA +L++ +VL+I L DPS+F+ F ++L G K KV
Sbjct: 147 DFSSRLQVSVYSIGATFLKMVKVLHIVK----LPLADPSLFIQHFAEKLDLGDKKIKVVK 202
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + +M +DW+ GR+P+G+ GA L ++ + L+ + S++V + H+ E TL +RL
Sbjct: 203 DAVKLAQTMSKDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEVVAVSHVAEETLQQRLN 262
Query: 180 EFENTDSGSLTIEDFMA-----------------RKKELHE------GVAANLPNNGPKV 216
EF+NT SG+L+I+ F R+ L E G A +L + +
Sbjct: 263 EFKNTKSGNLSIKQFRDTSTEEEVQQSDSKPPSFRRNRLKETKLKEKGPAEHLETSDQAL 322
Query: 217 SG---MNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGL-EGGADPPAFQVAERERMVKA 272
+ +++VL + T K L + +S+ +G D P ++ +
Sbjct: 323 ARNPILSQVLGGQEVTSKEVLFYLKQISERRERALSKRRDQGNNDSPDAHSQAGDKRSRG 382
Query: 273 SAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATT 332
A S +E + SR+D S E S G + +T H +
Sbjct: 383 DA-SGSDYEDQDG----SRLDSDASSE-HSQGQIDGYSLETDPYRPRNLHLLPTSESLLS 436
Query: 333 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAAK 388
+ SD +N D+DD E++ ++ +EE K+ IW +N EYL EQ +K EA A+
Sbjct: 437 KVSDDPENLEDVDDEELEAHILDEEASKLKERIWIGINGEYLLEQESKRLKLEADLASGN 496
Query: 389 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 448
+L+ + A+ L A AAA + Q AEA SG TA E+ + ML
Sbjct: 497 TSLKKKRSSKKRKTDASNLLPEALAAADPTGIQPALQ--VAEA--SGDLTTA-ESVKNML 551
Query: 449 TKKRLSSKINYDVLEKLF 466
K S KINYD ++ LF
Sbjct: 552 QKTSFSKKINYDAIDGLF 569
>gi|338753402|ref|NP_001229715.1| transcription factor IIIB 90 kDa subunit isoform 4 [Homo sapiens]
gi|332843234|ref|XP_003314588.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1 [Pan
troglodytes]
gi|397470871|ref|XP_003807035.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 4 [Pan
paniscus]
Length = 584
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 150/492 (30%), Positives = 225/492 (45%), Gaps = 91/492 (18%)
Query: 26 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 85
+AV+R+ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 86 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 144
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 145 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA-------- 196
AAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 116 AALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECD 175
Query: 197 -----------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEF 245
R K+L + ++ L ++S + + + +P A G S ++
Sbjct: 176 PPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDG 235
Query: 246 MT--ISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPE---- 299
T + L G + E E + A++ N RE + SPE
Sbjct: 236 STEDTASSLCG------EEDTEDEELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGR 289
Query: 300 PESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVD----- 350
P ++G + TA++ G D + + D + DG + S IDD E+D
Sbjct: 290 PPALGSLLD-PLPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRRDLS 348
Query: 351 -----------------GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 393
Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 349 MPRCAKAKSQPHFPVLAQYILNESEARVKAELWMRENAEYLREQREKEARIAKEK----- 403
Query: 394 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 453
EL KE + K++ + + A TA EA +ML +K++
Sbjct: 404 -------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKKI 441
Query: 454 SSKINYDVLEKL 465
SSKINY VL L
Sbjct: 442 SSKINYSVLRGL 453
>gi|383865567|ref|XP_003708244.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Megachile
rotundata]
Length = 656
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/467 (29%), Positives = 218/467 (46%), Gaps = 69/467 (14%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ + FY +A+ R+ T+GR+ A+C+Y+ CR + +LID S+ L I V+ELG
Sbjct: 106 IDTSMNFYKMALNRHLTRGRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRT 165
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 135
YL+ Q L I + VDP +++ +F ++L G +V TA ++ MKRD I +
Sbjct: 166 YLRFTQALCIN-----IPSVDPCLYIMRFANKLEFGEKTHEVSMTALRVVQRMKRDSIHS 220
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+PSGLCGAAL ++A H S +DI+KIV + E+TL KRLIEF +T S +LT+E+FM
Sbjct: 221 GRRPSGLCGAALLMAARLHEFNRSPADIIKIVKVHESTLRKRLIEFGDTPSSALTLEEFM 280
Query: 196 ---------------ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRS 240
ARKK+ L N +++ + + K D G R
Sbjct: 281 TVDLEEEQDPPAFKAARKKDRER--LQKLENIDTEINELQAEIDKQLDEQ---TIGKTRK 335
Query: 241 CYEEFMTISEGLEGGADPPAFQVAERERMVKASAEE--NSSFERESDSPFMSRVDKVQSP 298
D + + ER V+ S + S E + D P D +
Sbjct: 336 --------------RKDAAYLEREDTERFVRESNLDVIKSYVENDVDDPDSDLQDSNDTS 381
Query: 299 EPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEE 358
G+ N + + + ++ ++AT E + G + +D+DD E+D Y+ +E+E
Sbjct: 382 NRLITGLGPNIASMGLISANDRENETNGQMNATFENNSGEIDIADLDDEELDSYIMSEKE 441
Query: 359 KHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAK 418
+K +W ++N EYL +Q KE +
Sbjct: 442 AQFKHNLWNKVNAEYLNQQKEKEEKRQKE---------------------KEEGKPEKKR 480
Query: 419 SRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
R K+ K PA TA EA +ML +K++SSKINY+VL+ L
Sbjct: 481 RRTTKRNKTQT------PANTAGEAIEKMLQEKKISSKINYEVLKSL 521
>gi|221040424|dbj|BAH11919.1| unnamed protein product [Homo sapiens]
Length = 584
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 155/522 (29%), Positives = 222/522 (42%), Gaps = 151/522 (28%)
Query: 26 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 85
+AV+R+ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 86 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 144
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 145 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA-------- 196
AAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 116 AALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECD 175
Query: 197 -----------RKKEL------------------HEGVAANLPNNGPKVSGMNEVLCKH- 226
R K+L + + L N+ PK G L K
Sbjct: 176 PPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDG 235
Query: 227 --KDTGKPFACG---------------LCRSCYEEFMTISEGLEGGADPPAFQVAERERM 269
+DT CG L + Y E + GGA
Sbjct: 236 STEDTASSL-CGEEDTEDEELEAAASHLNKDLYRELL-------GGA------------- 274
Query: 270 VKASAEENSSFERESDSPFM-SRVDKVQSPEPESIGVP---KNCTTQTASNEGEGDHTKT 325
S+E S E P + S +D + P S+G+ + C + +SN +
Sbjct: 275 -PGSSEAAGSPEWGGRPPALGSLLDPL--PTAASLGISDSIRECISSQSSNPKDA----- 326
Query: 326 PGVDATTEASDGSDNFSDIDDFEVD----------------------GYLHNEEEKHYKK 363
+ DG + S IDD E+D Y+ NE E K
Sbjct: 327 --------SGDGELDLSGIDDLEIDRRDLSMPRCAKAKSQPHFPVLAQYILNESEARVKA 378
Query: 364 IIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEK 423
+W N EYL EQ KEA A K EL KE
Sbjct: 379 ELWMRENAEYLREQREKEARIAKEK------------------ELGIY---------KEH 411
Query: 424 QQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
+ K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 412 KPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 453
>gi|410916049|ref|XP_003971499.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Takifugu
rubripes]
Length = 690
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 145/489 (29%), Positives = 222/489 (45%), Gaps = 93/489 (19%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ + V+++ T+GR+TE V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 113 FFKMVVSKHLTRGRKTEHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYILGKTFLLLAR 172
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 141
L I + +DP +++ +F L G +V TA ++ MKRDW+ TGR+PSG
Sbjct: 173 ELCINAPA-----IDPCLYIPRFAHMLEFGVKTHEVSMTALRLVQRMKRDWMHTGRRPSG 227
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM------ 195
LCGAAL V+A H + + D++ +V +C+ TL KRL EFE+T + LTI++FM
Sbjct: 228 LCGAALLVAARMHKFRRTVKDVISVVKVCQTTLRKRLTEFEDTPTSQLTIDEFMKVDLEQ 287
Query: 196 -----------------------ARKKELHEG--------VAANLPNNGPKVSGMNEVLC 224
RK + EG + L + PK+ G+
Sbjct: 288 ECDPPSFTAGQHKVKMQQLEQELTRKLDDVEGEISCYKDEIETELEKSRPKLRGIYNTFT 347
Query: 225 KHKDTGKPFACGLCRSCYEEFMTISEGLEGGA-----DPPAFQVAERERMVKAS--AEEN 277
K D K S + M + + ++ A D + E+E VK + E
Sbjct: 348 KESDPAKAEVM----SVTSDPMELEDEVQAAAQKLTQDFLCHVIQEQEGWVKKAEDGEHK 403
Query: 278 SSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDG 337
+E+ V V+ P +G+ + AS + + D ++ + E G
Sbjct: 404 EDLLKET-------VKSVRQGPP--LGIILGNLSSAASLDLQQDLEES-ATELEDEQLKG 453
Query: 338 SD-NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 396
+ + IDD E++ Y+ N++E K +W N EYL+EQ KE K + +YK
Sbjct: 454 EELDLDGIDDQEIEKYILNDKEVEVKTELWMRQNAEYLKEQKEKEERIQKEKE--QGTYK 511
Query: 397 NCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSK 456
+ + R E A TA EA ML KK++SSK
Sbjct: 512 ------------EKSKKPKKKRERME--------------ASTAGEAIEMMLEKKKISSK 545
Query: 457 INYDVLEKL 465
INYDVL L
Sbjct: 546 INYDVLRHL 554
>gi|340722869|ref|XP_003399823.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Bombus
terrestris]
Length = 659
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 143/479 (29%), Positives = 225/479 (46%), Gaps = 92/479 (19%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ + FY +A+ R T+GR+ A+C+Y+ CR + +LID S+ L I V+ELG
Sbjct: 106 IDTSMNFYKMALNRQLTRGRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRT 165
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 135
YL+ Q L I + VDP +++ +F ++L G +V TA ++ MKRD I +
Sbjct: 166 YLRFTQALCIN-----IPSVDPCLYIMRFANKLEFGEKTHEVSMTALRVVQRMKRDSIHS 220
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+PSGLCGAAL ++A H S +DI+KIV + E+TL KRLIEF +T S +LT+E+FM
Sbjct: 221 GRRPSGLCGAALLMAARLHEFNRSPADIIKIVKVHESTLRKRLIEFGDTPSSALTLEEFM 280
Query: 196 ---------------ARKKELHEGVAANLPNNGPKVSG-MNEVLCKHKDTGKPFACGLCR 239
ARKK+ N+ ++ +++ L +H+ GK
Sbjct: 281 TVDLEEEQDPPAFKAARKKDRERLQRLNIDTEINELQAEIDKQLEEHR-LGK-------- 331
Query: 240 SCYEEFMTISEGLEGGADPPAFQVAERERMVKASA-------------EENSSFERESDS 286
++ D + + A+ +R ++ S + +S F+ +
Sbjct: 332 ------------MKKRKDAASIERADTDRFIRESNLDVIKHYVGNDVDDPDSDFQDSEMN 379
Query: 287 PFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDD 346
R+ P S+G+ +T NE TK P V+ E G + +D+DD
Sbjct: 380 NINDRLITGLGPNIASMGL---ISTNDRENE-----TKDP-VNTNFENDTGEIDVADLDD 430
Query: 347 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 406
E+D Y+ +E+E +K +W ++N EYL +Q KE
Sbjct: 431 EELDSYIMSEKEAQFKHNLWNKVNAEYLNQQKEKEERRQKE------------------- 471
Query: 407 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
+ R K+ KN PA TA EA +ML +K++SSKINY+VL+ L
Sbjct: 472 --KEEGKPEKKRRRTTKRN------KNQVPANTAGEAIEKMLQEKKISSKINYEVLKSL 522
>gi|328785533|ref|XP_623775.3| PREDICTED: transcription factor IIIB 90 kDa subunit-like isoform 2
[Apis mellifera]
Length = 661
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 138/477 (28%), Positives = 225/477 (47%), Gaps = 87/477 (18%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ + FY +A+ R T+GR+ A+C+Y+ CR + +LID S+ L I V+ELG
Sbjct: 106 IDTSMNFYKMALNRQLTRGRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRT 165
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 135
YL+ Q L I + VDP +++ +F ++L G +V TA I+ MKRD I +
Sbjct: 166 YLKFTQALCIN-----IPSVDPCLYIMRFANKLEFGEKTHEVSMTALRIVQRMKRDSIHS 220
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+PSGLCGAAL ++A H S +DI+KIV + E+TL KRLIEF +T S +LT+E+FM
Sbjct: 221 GRRPSGLCGAALLMAARLHEFNRSPTDIIKIVKVHESTLRKRLIEFGDTPSSALTLEEFM 280
Query: 196 ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGG 255
E + P A + R E + E ++
Sbjct: 281 TVDLEEEQD---------------------------PPAFKIARKKDRERLQRLENIDTE 313
Query: 256 ADPPAFQV---AERERMVKASAEENSS-FERESDSPFM--SRVDKVQSPEPESIGVP--- 306
+ ++ E R+ KA ++++ E+E F+ S +D +++ I P
Sbjct: 314 INELQAEIDKQLEDHRLGKARKRKDAAIIEKEDTDRFIRESNLDVIKNYVENDIDDPDNE 373
Query: 307 -KNCTTQTASNE---GEGDHTKTPGVDATT--------------EASDGSDNFSDIDDFE 348
+N + A+N G G + + G+ +T E + G + +D+DD E
Sbjct: 374 IQNSESSNANNRLIIGLGPNIASMGLISTNNRENETKESVNINFENNSGEIDVADLDDEE 433
Query: 349 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQEL 408
+D Y+ +E+E +K +W ++N EYL +Q +
Sbjct: 434 LDSYIMSEKEAQFKHNLWNKVNAEYL---------------------------IQQKERE 466
Query: 409 AAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
++K+++ K+ PA TA EA +ML +K++SSKINY+VL+ L
Sbjct: 467 EKRQKEKEEGKPEKKRRRTTKRNKSQAPANTAGEAIEKMLQEKKISSKINYEVLKSL 523
>gi|390358626|ref|XP_794011.3| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Strongylocentrotus purpuratus]
Length = 766
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/177 (47%), Positives = 120/177 (67%), Gaps = 6/177 (3%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
+A F+ +AV + T+GR+T + A+CLYL CR +S P +L+D S+ L +NVY LG YL
Sbjct: 109 MAYNFFKMAVQKKLTRGRKTMHIVAACLYLVCRLESTPHMLLDLSDLLQVNVYVLGKTYL 168
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGR 137
+LCQ L+I NV +DP +F+ +F +L VC+TA +++ MKRDW+ TGR
Sbjct: 169 KLCQELHI----NV-PAIDPCLFIQRFAHKLEFDERTDVVCETALRLVSRMKRDWMHTGR 223
Query: 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
+PSGLCGAAL V+A H ++ D++K+V +C+ATL KRL EFE T SG LTI++F
Sbjct: 224 RPSGLCGAALLVAARMHNFSRTQKDVIKVVKVCDATLRKRLSEFEETPSGKLTIDEF 280
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 37/180 (20%)
Query: 286 SPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDID 345
S S DK P P S+G ++ E K+P D DG + + ID
Sbjct: 471 SAVWSDEDKGLGPSPLSLGF------ESIIKEAAIPEEKSPDSD------DGELDLTGID 518
Query: 346 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 405
+ E++ ++ +E+E K +W + N EY++ KE + L GL+
Sbjct: 519 EKEMELFILSEKEVMIKTTLWMKENGEYMKLMEEKELRLRKERELL---------GLKPD 569
Query: 406 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
Q + A TA EA ++L +K++SSKINYDVL L
Sbjct: 570 QPKKKRKNNKKPPIQ----------------ANTAGEAIEKLLVEKKISSKINYDVLRDL 613
>gi|449015338|dbj|BAM78740.1| RNA polymerase III transcription factor IIIB [Cyanidioschyzon
merolae strain 10D]
Length = 953
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 139/248 (56%), Gaps = 26/248 (10%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
V A R + +AV NF +GRRT+ V A+ LY+ CR++ P LLIDFS+ L INVY LG
Sbjct: 352 FVDAAHRLFTLAVQHNFVQGRRTQTVAAAALYIVCRREKTPHLLIDFSDTLRINVYVLGH 411
Query: 76 VYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWIT 134
YL+LC+VL++A L +DPS ++H+F RL G + V TA +++ MKRDWI
Sbjct: 412 TYLKLCRVLHLA-----LPIIDPSFYIHRFASRLDLGEKQNAVAQTALRLISRMKRDWIH 466
Query: 135 TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
TGR+P+GLCGAAL ++A HG + S+ +I +V + + T+ +RL E E T +G+LT +
Sbjct: 467 TGRRPAGLCGAALLIAARMHGFRRSQREIGAVVRVGDMTIRQRLCEIEETPTGTLTGREL 526
Query: 195 MARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEG 254
A SG+ E + + T P A S + L+
Sbjct: 527 AAE-------------------SGLIESVAEEDTTEAPLAATADTSANAVSPEAVDTLD- 566
Query: 255 GADPPAFQ 262
G DPPAF+
Sbjct: 567 GCDPPAFR 574
>gi|156341179|ref|XP_001620678.1| hypothetical protein NEMVEDRAFT_v1g147404 [Nematostella vectensis]
gi|156205891|gb|EDO28578.1| predicted protein [Nematostella vectensis]
Length = 522
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 151/475 (31%), Positives = 221/475 (46%), Gaps = 85/475 (17%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A FY +AV + T+GRRT V A+CLYL CR + P +L+DFS+ L I+V+ LG
Sbjct: 105 IDTAYNFYKLAVNKRLTRGRRTAHVVAACLYLVCRTERTPHMLLDFSDILQIDVFTLGRA 164
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITT 135
YL+L Q LYI L +DP +++H+F +L G + V TA +++ MKRDWI
Sbjct: 165 YLKLAQELYIN-----LPAIDPCLYIHRFAHKLELGEKEHDVAVTALRLVSRMKRDWIHH 219
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF- 194
GR+PSGLCGAAL V++ H S ++VK+V I + T+ KRL EF++T S LTI++F
Sbjct: 220 GRRPSGLCGAALLVASRLHSFNRSVREVVKVVRISDTTIRKRLGEFKDTPSSQLTIDEFH 279
Query: 195 --------------MARKKELHEGVAANLPNNGPKVS----------GMNEVLCKHKDTG 230
ARKK + P +V G+ + + ++T
Sbjct: 280 KIDLEEEQDPPCFTHARKKAKQQAEDVVNPEITQEVEKFRTEIDNILGIRQEIRNQENT- 338
Query: 231 KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMS 290
E+ M+ S+ GG P + VA V AS +S + +
Sbjct: 339 ------------EKTMSPSDQRAGGESPAS--VACNSVDVAASVSGSS-----TRGDCFA 379
Query: 291 RVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVD 350
D Q E ++I K C ++ + H + P + E S + + +DD E+D
Sbjct: 380 SYDMTQDEEGKAILFQKLCCKTSSMH-----HHRFPNI--VREESGEELDLTGLDDVELD 432
Query: 351 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 410
L E+E K IW E N+EYLE+ KE A + Q +
Sbjct: 433 KCLLTEDEIKVKTKIWMEENKEYLEKMKEKEEQEAQDR----------------EQGIVK 476
Query: 411 AAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
K KQ PA TA EA +ML ++++SSKINY+VL L
Sbjct: 477 PEKKKRKYKSKNKQ-----------PASTAGEAIEKMLVERKISSKINYEVLRDL 520
>gi|380022853|ref|XP_003695250.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Apis
florea]
Length = 631
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 133/473 (28%), Positives = 218/473 (46%), Gaps = 83/473 (17%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ + FY +A+ R T+GR+ A+C+Y+ CR + +LID S+ L I V+ELG
Sbjct: 106 IDTSMNFYKMALNRQLTRGRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRT 165
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 135
YL+ Q L I + VDP +++ +F ++L G +V TA I+ MKRD I +
Sbjct: 166 YLKFTQALCIN-----IPSVDPCLYIMRFANKLEFGEKTHEVSMTALRIVQRMKRDSIHS 220
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+PSGLCGAAL ++A H S +DI+KIV + E+TL KRLIEF +T S +LT+E+FM
Sbjct: 221 GRRPSGLCGAALLMAARLHEFNRSPADIIKIVKVHESTLRKRLIEFGDTPSSALTLEEFM 280
Query: 196 ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGG 255
E + P A + R E + E ++
Sbjct: 281 TVDLEEEQ---------------------------DPPAFKIARKKDRERLQRLENIDTE 313
Query: 256 ADPPAFQVAE--------RERMVKASAEENSSFERESDSPFMSRV---------DKVQSP 298
+ ++ + + R K E+ F RES+ + +++Q
Sbjct: 314 INELQAEIDKQLEDHRLGKTRKRKDEKEDTDRFIRESNLDVIKNYVENDIDDPDNEIQDS 373
Query: 299 EPES------IGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGY 352
E + IG+ N + + ++ V+ E + G + +D+DD E+D Y
Sbjct: 374 ESNNANNRLIIGLGPNIASMGLISANNRENETKESVNINFENNSGEIDVADLDDEELDSY 433
Query: 353 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAA 412
+ +E+E +K +W ++N EYL +Q ++
Sbjct: 434 IMSEKEAQFKHNLWNKVNAEYL---------------------------IQQKEKEEKRQ 466
Query: 413 AAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
++K+++ K+ PA TA EA +ML +K++SSKINY+VL+ L
Sbjct: 467 KEKEEGKPEKKRRRTTKRNKSQAPANTAGEAIEKMLQEKKISSKINYEVLKSL 519
>gi|146414780|ref|XP_001483360.1| hypothetical protein PGUG_04089 [Meyerozyma guilliermondii ATCC
6260]
Length = 539
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 141/485 (29%), Positives = 238/485 (49%), Gaps = 58/485 (11%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++++ A+ I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++ P +LI
Sbjct: 91 IKRIATAMRI--PDYISDAAAEWFRLALTLNFVQGRRSQNVLAACLYVACRKEKTPHMLI 148
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 119
DFS+ L I+VY LGA +L++ + L+I + L DPS+F+ F +RL G KV
Sbjct: 149 DFSSRLQISVYSLGATFLKMVRALHITN----LPLADPSLFIQHFAERLDFGDLLTKVIK 204
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M DWI GR+P+G+ GA + ++A + + S ++IV + H+ E TL +RL
Sbjct: 205 DAVKLAQRMANDWIHEGRRPAGVAGACVLLAARMNNFRRSHAEIVAVAHVAEETLQRRLN 264
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVAANLPN---NGPKVSGMNEVLCKHKDTGKPFACG 236
EF+ T SG+L++ DF + L + AN P+ N + + + L + + T + G
Sbjct: 265 EFKKTSSGALSVADF----RLLEQMDPANPPSFNKNREQELRIAQELQQAQST-ETLLGG 319
Query: 237 LCRSCYEE-----FMTISEGLEGGADPPAFQVAERERMVKASAE--ENSSFERESDSPFM 289
S E TI + + + Q+ +R+V+A + +NS + SD
Sbjct: 320 ETSSAKEAHKQKLLKTILKDCDLSEQEISTQL---QRIVQAQQKSLQNSMYTTPSDRQGD 376
Query: 290 SRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEV 349
+ +D+V + P+N + E D +T + T +F+D+DD E+
Sbjct: 377 ASIDRV------DLDKPRNLSKNLPRTE---DILQTVSLHPT--------DFTDLDDEEL 419
Query: 350 DGYLHNEEEKHYKKIIWEEMNREYL---EEQAAKEAAAAAAKAALEASYKNCPE--GLQA 404
+ EEE K+ +W +N ++L E + KE A + K P+ G++
Sbjct: 420 SLFKLTEEEHRLKERVWTGLNHDFLLAQERKRLKEEADELTGNTSGSKRKRKPKASGIED 479
Query: 405 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 464
E+ A A ++G TA ++ +RML+KK S KINY L
Sbjct: 480 LNEMGMGEALA-----------NIGVDDSTGEPLTAADSAKRMLSKKSFSKKINYATLGD 528
Query: 465 LFDDS 469
LF ++
Sbjct: 529 LFGET 533
>gi|190347671|gb|EDK39991.2| hypothetical protein PGUG_04089 [Meyerozyma guilliermondii ATCC
6260]
Length = 539
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 139/488 (28%), Positives = 230/488 (47%), Gaps = 64/488 (13%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++++ A+ I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++ P +LI
Sbjct: 91 IKRIATAMRI--PDYISDAAAEWFRLALTLNFVQGRRSQNVLAACLYVACRKEKTPHMLI 148
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 119
DFS+ L I+VY LGA +L++ + L+I + L DPS+F+ F +RL G KV
Sbjct: 149 DFSSRLQISVYSLGATFLKMVRALHITN----LPLADPSLFIQHFAERLDFGDLLTKVIK 204
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M DWI GR+P+G+ GA + ++A + + S ++IV + H+ E TL +RL
Sbjct: 205 DAVKLAQRMANDWIHEGRRPAGVAGACVLLAARMNNFRRSHAEIVAVAHVAEETLQRRLN 264
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCK------HKDTGKPF 233
EF+ T SG+L++ DF R E + P N P + E + + +
Sbjct: 265 EFKKTSSGALSVADF--RSSEQMD------PANPPSFNKNREQELRIAQELQQAQSTETL 316
Query: 234 ACGLCRSCYEE-----FMTISEGLEGGADPPAFQVAERERMVKASAE--ENSSFERESDS 286
G S E TI + + + Q+ +R+V+A + +NS + SD
Sbjct: 317 LGGETSSAKEAHKQKLLKTILKDCDLSEQEISTQL---QRIVQAQQKSLQNSMYTTPSDR 373
Query: 287 PFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDD 346
+ +D+V + P+N + E D S +F+D+DD
Sbjct: 374 QGDASIDRV------DLDKPRNLSKNLPRTE-----------DILQTVSSHPTDFTDLDD 416
Query: 347 FEVDGYLHNEEEKHYKKIIWEEMNREYL---EEQAAKEAAAAAAKAALEASYKNCPE--G 401
E+ + EEE K+ +W +N ++L E + KE A + K P+ G
Sbjct: 417 EELSLFKLTEEEHRLKERVWTGLNHDFLLAQERKRLKEEADELTGNTSGSKRKRKPKASG 476
Query: 402 LQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDV 461
++ E+ A A ++G TA ++ +RML+KK S KINY
Sbjct: 477 IEDLNEMGMGEALA-----------NIGVDDSTGEPLTAADSAKRMLSKKSFSKKINYAT 525
Query: 462 LEKLFDDS 469
L LF ++
Sbjct: 526 LGDLFGET 533
>gi|348671349|gb|EGZ11170.1| hypothetical protein PHYSODRAFT_347658 [Phytophthora sojae]
Length = 672
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/191 (44%), Positives = 124/191 (64%), Gaps = 8/191 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+RQ+ L +G D V A R + +A+ RNFT GR+T+ V A+CLY+ CR++ P LLI
Sbjct: 92 IRQIAGMLRLG--DHYVDSAFRLFALALQRNFTHGRKTQTVIAACLYIVCRRERSPHLLI 149
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L INVY LG V+L+ C++L I L +DPS+++H+F +L G +
Sbjct: 150 DFSDKLQINVYVLGGVFLKFCKLLQIH-----LPLIDPSLYIHRFASQLNFAGKTHSIAT 204
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA ++A+MKRDWI TGR+PSG+CGAAL ++A + + S D++ +V+I E TL +RL
Sbjct: 205 TALRLVATMKRDWIETGRRPSGICGAALLIAARSQSVMCSLHDVMDVVNIGERTLKQRLY 264
Query: 180 EFENTDSGSLT 190
EF T + LT
Sbjct: 265 EFSLTPTAQLT 275
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 317 EGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEE 376
E EGD D +A + D FSD+DD E++ L EE KK++WE+MN+++++E
Sbjct: 557 ENEGD-------DEKGDAEEAVDTFSDLDDDEINSLLLTREEAEKKKLLWEKMNKDFIQE 609
Query: 377 QAAKEAAAAAAKAA 390
Q K +A A
Sbjct: 610 QEQKRLLGLSAPDA 623
>gi|350403589|ref|XP_003486845.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Bombus
impatiens]
Length = 659
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 145/502 (28%), Positives = 216/502 (43%), Gaps = 138/502 (27%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ + FY +A+ R T+GR+ A+C+Y+ CR + +LID S+ L I V+ELG
Sbjct: 106 IDTSMNFYKMALNRQLTRGRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRT 165
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 135
YL+ Q L I + VDP +++ +F ++L G +V TA ++ MKRD I +
Sbjct: 166 YLRFTQALCIN-----IPSVDPCLYIMRFANKLEFGEKTHEVSMTALRVVQRMKRDSIHS 220
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+PSGLCGAAL ++A H S +DI+KIV + E+TL KRLIEF +T S +LT+
Sbjct: 221 GRRPSGLCGAALLMAARLHEFNRSPADIIKIVKVHESTLRKRLIEFGDTPSSALTL---- 276
Query: 196 ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGG 255
EEFMT+ LE
Sbjct: 277 -----------------------------------------------EEFMTVD--LEEE 287
Query: 256 ADPPAFQVA---ERERM---------------VKASAEEN-----------SSFERESDS 286
DPPAF+ A +RER+ + EE+ +S ER
Sbjct: 288 QDPPAFKAARKKDRERLQRLNIDTEINELQAEIDKQLEEHRLGKMKKRKDAASIERADTD 347
Query: 287 PFM--SRVDKVQSPEPESIGVPKNCTTQTASNE-------GEGDHTKTPG---------- 327
F+ S +D ++ + P N + N G G + + G
Sbjct: 348 RFIRESNLDVIKHYVGNDVDDPDNDFQDSEMNNINDRLITGLGPNIASMGLISINDRENE 407
Query: 328 ----VDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAA 383
V+ E G + +D+DD E+D Y+ +E+E +K +W ++N EYL +Q KE
Sbjct: 408 TKESVNTNFENDTGEIDVADLDDEELDSYIMSEKEAQFKHNLWNKVNAEYLNQQKEKEER 467
Query: 384 AAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEA 443
+ R K+ KN PA TA EA
Sbjct: 468 RQKE---------------------KEEGKPEKKRRRTTKRN------KNQVPANTAGEA 500
Query: 444 TRRMLTKKRLSSKINYDVLEKL 465
+ML +K++SSKINY+VL+ L
Sbjct: 501 IEKMLQEKKISSKINYEVLKSL 522
>gi|301095599|ref|XP_002896899.1| transcription factor IIIB, putative [Phytophthora infestans T30-4]
gi|262108546|gb|EEY66598.1| transcription factor IIIB, putative [Phytophthora infestans T30-4]
Length = 589
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 85/191 (44%), Positives = 124/191 (64%), Gaps = 8/191 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+RQ+ L +G D V A R + +A+ RNFT GR+T+ V A+CLY+ CR++ P LLI
Sbjct: 92 IRQIAGMLRLG--DHYVDSAFRLFALALQRNFTHGRKTQTVIAACLYIVCRRERSPHLLI 149
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L INVY LG V+L+ C++L I L +DPS+++H+F +L G +
Sbjct: 150 DFSDKLQINVYVLGGVFLKFCKLLQIH-----LPLIDPSLYIHRFASQLNFAGKTHSIAT 204
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA ++A+MKRDWI TGR+PSG+CGAAL ++A + + S D++ +V+I E TL +RL
Sbjct: 205 TALRLVATMKRDWIETGRRPSGICGAALLIAARSQSVMCSLHDVMDVVNIGERTLKQRLY 264
Query: 180 EFENTDSGSLT 190
EF T + LT
Sbjct: 265 EFSLTPTAQLT 275
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 14/87 (16%)
Query: 318 GEGDHTKTPGVDATTEA-------------SDGS-DNFSDIDDFEVDGYLHNEEEKHYKK 363
G+ +H+ +P A EA +D + D FSD+DD E++ L EE KK
Sbjct: 454 GDTEHSTSPTTSADDEAVSTVIRRRRSRDLADSTVDTFSDLDDDEINSLLLTREEAEKKK 513
Query: 364 IIWEEMNREYLEEQAAKEAAAAAAKAA 390
++WE+MN++Y++EQ K +A A
Sbjct: 514 LLWEKMNKDYIQEQEQKRLLGLSAPDA 540
>gi|342319941|gb|EGU11886.1| Transcription factor TFIIIB complex subunit brf1 [Rhodotorula
glutinis ATCC 204091]
Length = 678
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 160/508 (31%), Positives = 235/508 (46%), Gaps = 75/508 (14%)
Query: 2 RQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 61
R M+ A + S+ + +VA RF+ +AV +FTKGRRT+ V A+CLY ACRQ + +LID
Sbjct: 89 RIMELATGLRLSEHLQNVATRFFNLAVNMSFTKGRRTQYVAAACLYAACRQANGTQMLID 148
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 120
FS+ L INV+ LG+ YL+L + L I + VDP I++ +F L G +KV
Sbjct: 149 FSDLLEINVFVLGSTYLKLVRQLNIN-----IPVVDPVIYITRFAALLDFGEETQKVALD 203
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A ++ M RDW+ GR+PSG+CGA L ++A + + S ++V++V I + TL KRL E
Sbjct: 204 ATRLVNRMGRDWMQIGRRPSGICGACLLLAARMNNFRRSIEEVVQVVKIADVTLRKRLAE 263
Query: 181 FENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRS 240
F+ T SG+LT+ DF R L E + P + L K +D K A R
Sbjct: 264 FKETASGNLTVSDF--RSIWLEE-------THDPPAYAVG--LKKEEDARKEQA----RK 308
Query: 241 CYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQS--- 297
E+ + SE D ++AERE A AE++ + S SP R ++
Sbjct: 309 MREDSIAASETDSVVGDRAFRELAERE--ATADAEDDIA----SSSPVRERARGKENEVE 362
Query: 298 --------PEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFE- 348
P+P + + K + EG P DA +E D ++ + D E
Sbjct: 363 VEGAMLPPPKPSAKALGKRKRVEPEEEEG-----GAPSSDAASEREDVAEELLEGDGHEQ 417
Query: 349 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL------ 402
D + E + + + +++ E LE Q K A + A E + EGL
Sbjct: 418 YDAVIEGELQNYLGSNVGVKLSHE-LESQEQKRRAKISQSPAYELDTNDSLEGLDEEELD 476
Query: 403 ---------QAAQELAAAAAAAVAKSRKEKQQKRAAEAK--NSGPAQ------------- 438
Q +L K EKQ E K N P +
Sbjct: 477 AFICTEEEVQIKAKLWMEHNKEYLKELAEKQTGPDGELKPINKRPRKKTKPRDGANPTGL 536
Query: 439 TALEATRRMLTKKRLSSKINYDVLEKLF 466
TA +AT +ML KK+ S KINYD ++ LF
Sbjct: 537 TAADATTKMLEKKKFSKKINYDAIKNLF 564
>gi|294660130|ref|XP_462571.2| DEHA2G23738p [Debaryomyces hansenii CBS767]
gi|199434484|emb|CAG91084.2| DEHA2G23738p [Debaryomyces hansenii CBS767]
Length = 583
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 137/516 (26%), Positives = 233/516 (45%), Gaps = 79/516 (15%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ AL I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 93 IRRIATALKI--PDYIADAAGAWFRLALTNNFVQGRRSQNVLAACLYVACRKEKTHHMLI 150
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L N KV
Sbjct: 151 DFSSRLQISVYSLGATFLKMVKTLHITS----LPLADPSLFIQHFAEKLNFRDQNSKVIK 206
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M DWI GR+P+G+ GA + ++A + + + ++IV + H+ E TL +RL
Sbjct: 207 DAVKLAQRMANDWIHEGRRPAGVAGACVLLAARMNNFRRTHAEIVAVAHVAEETLQRRLN 266
Query: 180 EFENTDSGSLTIEDF-------------MARKKELHEGVAANLPNNGPKVSGMNEVLCKH 226
EF+ T SG LT+E F R ++L +A L + + E L K
Sbjct: 267 EFKKTKSGELTVESFRESLDTEVSNPPSFDRNRDLELKLAKQLKDKEAALKKFEE-LAKS 325
Query: 227 KDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAF--QVAERERMVKASAEENSSFERES 284
+D + EE T + L+ + Q +++++++K ++ E E
Sbjct: 326 RDNTPDYDSD---DVSEEGSTRKQDLQDIIEDSRLKNQQSKKDKLLKTILKDCDLSENEI 382
Query: 285 DSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGV--------DATTEASD 336
+ + S+ + + +T E + D K + D ++ S
Sbjct: 383 SEQLARIIQNQKKSLQNSMYMIPSELQRTTDEEEKIDLDKPRNLVKNLPKTQDLLSKISS 442
Query: 337 GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 396
F D+DD E+D +L E+E K+ +W +N +++ Q K
Sbjct: 443 DPKEFDDLDDSELDHFLLTEDEYKLKERLWTGLNHDFIVAQEKKRLK------------- 489
Query: 397 NCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKN----------------------- 433
Q EL + A +RK+++Q + + +
Sbjct: 490 ------QETDELTGNTSGA---NRKKRRQGKNSGVEGIDGDFVNEMGINDALTGIGVDEA 540
Query: 434 SGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 469
+G TA ++ +RML+KK S KINY L LFDD+
Sbjct: 541 TGEPLTAADSAKRMLSKKSFSKKINYATLGDLFDDN 576
>gi|198427438|ref|XP_002130866.1| PREDICTED: similar to LOC494758 protein [Ciona intestinalis]
Length = 657
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 139/494 (28%), Positives = 226/494 (45%), Gaps = 71/494 (14%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R M LN+ V A F+ +A+++ ++GRR + A+CLY+ CR + P LL+
Sbjct: 90 IRDMAAQLNLNR--HCVDTAFNFFKMAISKRLSRGRRITHIVAACLYMTCRTEGTPHLLL 147
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ +NV+ LG V+L L + L+I L +DP +++ +F RL +V
Sbjct: 148 DFSDITQVNVFILGKVFLLLAKELHIN-----LPVLDPCMYITRFAHRLDFNEKTHEVSV 202
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A +++ MKRDWI TGR+PSGLCGAAL V+A HG +D+VK+ I T+ KRL
Sbjct: 203 AAMRLVSRMKRDWIHTGRRPSGLCGAALLVAARLHGFNCDLNDVVKVARIGHDTIRKRLN 262
Query: 180 EFENTDSGSLTIEDFMA----------------RKKELH--EGVAANLPNNGPKVSGMNE 221
EFE+T S LTI +FM K ++H E A+L N K+S + +
Sbjct: 263 EFESTPSSKLTINEFMKIDLEAEHDPPAFINSRIKAKIHQLEAEGASLENEIGKLSNVID 322
Query: 222 VLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFE 281
+ + + + + E + DP R +E +
Sbjct: 323 DKLTQQSSRPASPANVSKPSNSSVNRVPEHVSNDDDPEL-----RAAATFMHSEHPEAVA 377
Query: 282 RESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGE----GDHTKTPGVDATTEASD- 336
+ SP K P+P G T TA++ G + TP +D
Sbjct: 378 QSLLSP------KRGLPQPTRQGFRSTGPTPTAASLGLRTSIDECLSTPSDSDRLHENDN 431
Query: 337 --GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 394
G + + IDD E+D L + E K+ IW + E+++E
Sbjct: 432 NNGELDLTGIDDNEIDKLLLSPHESEIKQRIWMKEYGEFVKE------------------ 473
Query: 395 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 454
L+ +E+ K+R+ ++ K+ + G ++TA EA ++++++RLS
Sbjct: 474 -------LEEKREIKRIENE--KKNRRPRKFKQVRYKEYYGESRTAGEAIEKLVSRQRLS 524
Query: 455 SKINYDVLEKLFDD 468
+KINY+ L+K +D
Sbjct: 525 NKINYEALKKATED 538
>gi|198451369|ref|XP_001358335.2| GA16127 [Drosophila pseudoobscura pseudoobscura]
gi|198131458|gb|EAL27473.2| GA16127 [Drosophila pseudoobscura pseudoobscura]
Length = 665
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 146/481 (30%), Positives = 226/481 (46%), Gaps = 88/481 (18%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
A F+ +A++R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALSRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 137
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM-- 195
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTMVDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFMTV 284
Query: 196 -------------ARKK--------------ELHEGVAANLPNN-GPKVSGMNEVLCKHK 227
ARKK EL + + A+L + G S + L K K
Sbjct: 285 DLEREQDPPSFRAARKKDRERINNIGEHELTELQKEIDAHLEKDLGKYSSSVFRQLTKIK 344
Query: 228 -DTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDS 286
DT G +S E + + D F ++K E N ++
Sbjct: 345 GDTSFGSEPGTPKSVCENDIEME-------DSRQFIEQSNAAIIKDLIEHNEDVKKTEPG 397
Query: 287 PFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDD 346
M+ ++ ++ P+ E+I C T S + + K P TE D++D
Sbjct: 398 SLMAGIEGLR-PDIEAI-----CRV-TQSELEDVERAKQP---LETELV-----IDDLND 442
Query: 347 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 406
E+D Y+ E+E K +W+ MN EYL+EQ ++ +
Sbjct: 443 DELDQYVLTEDEAVSKLEMWKNMNAEYLQEQKERD------------------------E 478
Query: 407 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 466
LA + +K K +K+ GP+ TA EA +ML +K++SSKINYD+L+ L
Sbjct: 479 RLAKEREEGKPEKKKRKPRKKVI-----GPSSTAGEAIEKMLQEKKISSKINYDILKTLT 533
Query: 467 D 467
D
Sbjct: 534 D 534
>gi|195144240|ref|XP_002013104.1| GL23944 [Drosophila persimilis]
gi|194102047|gb|EDW24090.1| GL23944 [Drosophila persimilis]
Length = 665
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 146/481 (30%), Positives = 226/481 (46%), Gaps = 88/481 (18%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
A F+ +A++R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALSRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 137
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM-- 195
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTMVDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFMTV 284
Query: 196 -------------ARKK--------------ELHEGVAANLPNN-GPKVSGMNEVLCKHK 227
ARKK EL + + A+L + G S + L K K
Sbjct: 285 DLEREQDPPSFRAARKKDRERIKDMGEHELTELQKEIDAHLEKDLGKYSSSVFRQLTKIK 344
Query: 228 -DTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDS 286
DT G +S E + + D F ++K E N ++
Sbjct: 345 GDTSFGSEPGTPKSVCENDIEME-------DSRQFIEQSNAAIIKDLIEHNEDVKKTEPG 397
Query: 287 PFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDD 346
M+ ++ ++ P+ E+I C T S + + K P TE D++D
Sbjct: 398 SLMAGIEGLR-PDIEAI-----CRV-TQSELEDVERAKQP---LETELV-----IDDLND 442
Query: 347 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 406
E+D Y+ E+E K +W+ MN EYL+EQ ++ +
Sbjct: 443 DELDQYVLTEDEAVTKLEMWKNMNAEYLQEQKERD------------------------E 478
Query: 407 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 466
LA + +K K +K+ GP+ TA EA +ML +K++SSKINYD+L+ L
Sbjct: 479 RLAKEREEGKPEKKKRKPRKKVI-----GPSSTAGEAIEKMLQEKKISSKINYDILKTLT 533
Query: 467 D 467
D
Sbjct: 534 D 534
>gi|330796592|ref|XP_003286350.1| hypothetical protein DICPUDRAFT_6794 [Dictyostelium purpureum]
gi|325083701|gb|EGC37147.1| hypothetical protein DICPUDRAFT_6794, partial [Dictyostelium
purpureum]
Length = 426
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 117/174 (67%), Gaps = 6/174 (3%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A+R + +A+ NFTKGR+T+ V ASCLY+ CR++ P LLIDFS L +NV+ L
Sbjct: 92 IDSAQRSFELAMENNFTKGRKTKLVAASCLYVVCRREKTPHLLIDFSEVLQVNVFTLAHT 151
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITT 135
+LQL ++L I L VDPS+F+++F+ L G K+V TA ++A MKRDW+ T
Sbjct: 152 FLQLIKLLNIQ-----LPIVDPSLFIYRFSSSLEFGSQTKEVTATANKLVARMKRDWMCT 206
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSL 189
GRKPSG+CGAALY+++ HG K S +IV IV I E+TL+ RL EF T S SL
Sbjct: 207 GRKPSGICGAALYIASKIHGFKRSMKEIVHIVKIGESTLLARLEEFRRTPSASL 260
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 338 SDNFSDIDDFEVDGYL-HNEEEKHYKKIIWEEMNREYLEEQAAKE 381
+D D+ + E+D YL H++E K++IW E+N+E++E+ A ++
Sbjct: 364 NDTLDDLSEDELDLYLEHDKETVKKKEVIWTELNKEWIEKNAERQ 408
>gi|425768851|gb|EKV07363.1| Transcription factor TFIIIB complex subunit Brf1, putative
[Penicillium digitatum Pd1]
gi|425770184|gb|EKV08657.1| Transcription factor TFIIIB complex subunit Brf1, putative
[Penicillium digitatum PHI26]
Length = 740
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 148/492 (30%), Positives = 219/492 (44%), Gaps = 52/492 (10%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 59
M Q+ AL I ES A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 143 MLQLSRALTIPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQNGNTVML 200
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVC 118
IDF++ L INV++LG Y L L + ++ +DP +++F +L G + V
Sbjct: 201 IDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGPSLMAVA 260
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A I+ M RDW+TTGR+P+GLCGAAL ++A + + + ++V IV + E T+ +RL
Sbjct: 261 GEAVRIVQRMNRDWMTTGRRPAGLCGAALILAARMNNFRRTVREVVYIVKVTETTISQRL 320
Query: 179 IEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPK--VSGMNEVLCKHKDTGKPFAC 235
EF +T+SG LT++ F + + E H+ + G K + + E + +D P
Sbjct: 321 NEFGSTESGELTVDQFRSVQLENTHDPPSFTRGREGRKSRIKKLPETAAELEDNDSP--- 377
Query: 236 GLCRSCYEEFMTISEGLEGGADP-----PAFQVAERERMVKASAEE-NSSFERESDSPFM 289
S E +G A P PA R A+ N E + P
Sbjct: 378 --TESEAESVQPPRIDADGFAIPSLPIDPALTAISHGRRASVIAKAVNEVVEDIKNEPVH 435
Query: 290 SRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTP-----------GVDATTEASDGS 338
S+ + P PE Q AS D ++ G + T +
Sbjct: 436 SKGKGKRQPTPEP------SAEQVASEAALEDEMRSMLAQGSSMIESIGSEQPTRPTVSD 489
Query: 339 DNFSDIDDFEVDGYLHN----EEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 394
D +FE D + N E K+ IW N+EYL Q AK A K ALE S
Sbjct: 490 STEIDAAEFEDDPEVANCLLLPAEVEIKESIWVTENKEYLRTQQAK-----ALKRALEES 544
Query: 395 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 454
+ ++ V E + R++ A T EATRRML ++ S
Sbjct: 545 TGGG--APRKPRKRRRGRLGDVTYLEGEGEDGRSSR------ASTPAEATRRMLERRGYS 596
Query: 455 SKINYDVLEKLF 466
KINY +L+ L+
Sbjct: 597 KKINYSLLDTLY 608
>gi|159476536|ref|XP_001696367.1| hypothetical protein CHLREDRAFT_112803 [Chlamydomonas reinhardtii]
gi|158282592|gb|EDP08344.1| predicted protein [Chlamydomonas reinhardtii]
Length = 167
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 121/165 (73%), Gaps = 3/165 (1%)
Query: 30 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 89
RNFT+GRR QV A CLY+ CR + +P++LIDFS++L++NVY LGAV+LQL ++L + +
Sbjct: 3 RNFTRGRRVNQVAAVCLYIFCRLERRPYMLIDFSDHLSVNVYALGAVFLQLLKLLRLDEH 62
Query: 90 SNVLKQVDPSIFLHKFTDRL-LPGG--NKKVCDTARDILASMKRDWITTGRKPSGLCGAA 146
+ K +DPS+FL++F DRL LP KV +TA ++ SMKRDW+ TGR+PSG+CGAA
Sbjct: 63 GTLTKPIDPSLFLNRFVDRLRLPTQELKSKVGNTAMRLVQSMKRDWMLTGRRPSGICGAA 122
Query: 147 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 191
L+++A HG++ +K D++ IVHI AT+ KR++E T LT+
Sbjct: 123 LFLAAHIHGVEKTKRDVIAIVHIGWATVEKRVMELAETRDAQLTL 167
>gi|452820163|gb|EME27209.1| RNA polymerase III transcription factor IIIB [Galdieria
sulphuraria]
Length = 547
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 121/191 (63%), Gaps = 8/191 (4%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
AL++ S E A R + +A+ NF +GR+ V ASCLY+ CR++ P LLIDFS+YL
Sbjct: 116 ALHLNPSQE--EQAFRMFLLAIEHNFLQGRKASNVCASCLYIVCRREKTPHLLIDFSDYL 173
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDIL 125
NVY+LG +L+ ++L ++ L +DPS+++H+F +L V +A ++
Sbjct: 174 QTNVYDLGRTFLKFARILNLS-----LPIIDPSLYIHRFASKLGFEEKTHAVATSALRLI 228
Query: 126 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 185
A MKRDWI TGR+PSGLCGAAL+V+A HG S+ +IV +V I + TL KRL+E E T
Sbjct: 229 ARMKRDWIHTGRRPSGLCGAALFVAAKMHGFYRSQREIVNVVRIGDVTLRKRLLELEETP 288
Query: 186 SGSLTIEDFMA 196
S LT ++ A
Sbjct: 289 SALLTADEIDA 299
>gi|66813424|ref|XP_640891.1| TATA box-binding protein-associated factor, RNA polymerase III,
subunit 2 [Dictyostelium discoideum AX4]
gi|60468904|gb|EAL66904.1| TATA box-binding protein-associated factor, RNA polymerase III,
subunit 2 [Dictyostelium discoideum AX4]
Length = 706
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 122/195 (62%), Gaps = 8/195 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ Q+ N+L I ++ A+R + +A+ NFTKGR+T V A+CLY+ CR++ P LLI
Sbjct: 81 LDQIGNSLRI--RSHLIDSAQRTFELAMENNFTKGRQTRLVAAACLYIVCRRERTPHLLI 138
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCD 119
DFS L +NV+ + +LQL ++L I L VDPS F+ +F L G K V
Sbjct: 139 DFSENLQVNVFIVAGTFLQLIKLLNIQ-----LPIVDPSFFIQRFASALEFGDQTKDVIA 193
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA ++A MKRDW++ GRKPSG+CGA+LY+++ HG K S +IV +V I E TL+ RL
Sbjct: 194 TANKLVARMKRDWMSIGRKPSGICGASLYIASKIHGFKRSMKEIVHVVKIGEQTLINRLD 253
Query: 180 EFENTDSGSLTIEDF 194
EF T + +L ++F
Sbjct: 254 EFRKTPTATLRFDEF 268
>gi|387597044|gb|EIJ94664.1| transcription initiation factor IIB [Nematocida parisii ERTm1]
Length = 448
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 130/193 (67%), Gaps = 8/193 (4%)
Query: 2 RQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 61
+ + AL IGES ++ A R+Y +++ NFTKGR+T+ + A+CLY+ CR++ P +L+D
Sbjct: 82 KSIGEALGIGESQ--INSAMRWYNLSLQFNFTKGRKTQVLLAACLYITCREEETPHMLVD 139
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
F+ L INV+++G+++L+L ++L I + VDPS+F+ +F +L N+ V TA
Sbjct: 140 FAYILRINVFKIGSIFLKLIRLLNIT-----MPLVDPSLFVPRFCSKL-NLNNQNVGKTA 193
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
++A M RDWI GRKP+G+CGAA+ +S+ HG + + ++ +V +CEAT+ KRL+E
Sbjct: 194 LRLIARMDRDWIVIGRKPAGICGAAILISSRIHGTERTVEEVANVVKVCEATINKRLMEL 253
Query: 182 ENTDSGSLTIEDF 194
+ T + +L+I +F
Sbjct: 254 KETATANLSISEF 266
>gi|387593387|gb|EIJ88411.1| transcription initiation factor IIB [Nematocida parisii ERTm3]
Length = 466
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 130/193 (67%), Gaps = 8/193 (4%)
Query: 2 RQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 61
+ + AL IGES ++ A R+Y +++ NFTKGR+T+ + A+CLY+ CR++ P +L+D
Sbjct: 82 KSIGEALGIGESQ--INSAMRWYNLSLQFNFTKGRKTQVLLAACLYITCREEETPHMLVD 139
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
F+ L INV+++G+++L+L ++L I + VDPS+F+ +F +L N+ V TA
Sbjct: 140 FAYILRINVFKIGSIFLKLIRLLNIT-----MPLVDPSLFVPRFCSKL-NLNNQNVGKTA 193
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
++A M RDWI GRKP+G+CGAA+ +S+ HG + + ++ +V +CEAT+ KRL+E
Sbjct: 194 LRLIARMDRDWIVIGRKPAGICGAAILISSRIHGTERTVEEVANVVKVCEATINKRLMEL 253
Query: 182 ENTDSGSLTIEDF 194
+ T + +L+I +F
Sbjct: 254 KETATANLSISEF 266
>gi|255942361|ref|XP_002561949.1| Pc18g01030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586682|emb|CAP94327.1| Pc18g01030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 739
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 150/494 (30%), Positives = 218/494 (44%), Gaps = 56/494 (11%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 59
M Q+ AL I ES A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 143 MLQLSRALTIPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQNGNTVML 200
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVC 118
IDF++ L INV++LG Y L L + ++ +DP +++F +L G + V
Sbjct: 201 IDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGPSLMAVA 260
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A I+ M RDW+TTGR+P+GLCGAAL ++A + + + ++V IV + E T+ +RL
Sbjct: 261 GEAVRIVQRMNRDWMTTGRRPAGLCGAALILAARMNNFRRTVREVVYIVKVTETTISQRL 320
Query: 179 IEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPK--VSGMNEVLCKHKDTGKPFAC 235
EF +T+SG LT++ F + + E H+ + G K V + E + +D P
Sbjct: 321 NEFGSTESGELTVDQFRSVQLENTHDPPSFTRGREGRKSRVKRLPETAAELEDDDSP--- 377
Query: 236 GLCRSCYEEFMTISEGLEGGADP-----PAFQVAERERMVKASAEE-NSSFERESDSPFM 289
S E +G A P PA R A+ N E + P
Sbjct: 378 --TESEAESVQPPRIDADGFAIPSLPIDPALTATSHGRRASVIAKAVNEVVEDIKNEPVH 435
Query: 290 SRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKT-----------------PGVDATT 332
S+ + P PE Q AS D ++ P +
Sbjct: 436 SKGKGKREPTPEP------SAEQVASEAALEDEMRSMLAQGSNMIESVGSEQPPRPTVSD 489
Query: 333 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 392
A + F D D EV L E K+ IW N+EYL Q AK A K ALE
Sbjct: 490 SAEIDAAEFED--DPEVANCLLLPAEVEIKESIWVTENKEYLRAQQAK-----ALKRALE 542
Query: 393 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 452
S + ++ V E + R++ A T EATRRML ++
Sbjct: 543 ESTGGG--TPRKPRKRRRGRLGDVTYLEGEGEDGRSSR------ASTPAEATRRMLERRG 594
Query: 453 LSSKINYDVLEKLF 466
S KINY +L+ L+
Sbjct: 595 YSKKINYSLLDTLY 608
>gi|194900456|ref|XP_001979773.1| GG16780 [Drosophila erecta]
gi|190651476|gb|EDV48731.1| GG16780 [Drosophila erecta]
Length = 668
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 139/483 (28%), Positives = 227/483 (46%), Gaps = 93/483 (19%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
A F+ +A++R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALSRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 137
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM-- 195
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFMTV 284
Query: 196 -------------ARKK--------------ELHEGVAANLPNN-GPKVSGMNEVLCKHK 227
ARKK EL + + A+L + G + + L K K
Sbjct: 285 DLEREQDPPSFKAARKKDRERIKDMGEHELTELQKEIDAHLEKDLGKYSNSVYRQLTKGK 344
Query: 228 DTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSP 287
+ G +S E+ + + E + F ++K +N ++
Sbjct: 345 GCTPLSSPGTPKSTSEKDIEMEESRQ-------FIEQSNAEVIKELIAKNEDVKKAEPGG 397
Query: 288 FMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDF 347
++ ++ ++ P+ E+I C T S+ + + K P E +D+ + D
Sbjct: 398 LVAGIEGLR-PDIEAI-----CRV-TQSDLEDVEKAKQP-----QEQELITDDLN---DD 442
Query: 348 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 407
E+D Y+ E+E K +W+ +N EYL+EQ +E
Sbjct: 443 ELDQYVLTEDEALAKFEMWKNLNAEYLQEQKERE-------------------------- 476
Query: 408 LAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINYDVLEK 464
+AK R+E + +R GP+ TA EA +ML +K++SSKINY++L+
Sbjct: 477 ------ERLAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINYEILKT 530
Query: 465 LFD 467
L D
Sbjct: 531 LTD 533
>gi|391339520|ref|XP_003744096.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Metaseiulus occidentalis]
Length = 689
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 121/195 (62%), Gaps = 8/195 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
M+ + + L + +D+IV A R Y +A+ RNFT GRR V A+C+Y+ CR K +L+
Sbjct: 90 MKLIADQLQL--NDDIVESAMRLYEMALIRNFTVGRRRSHVLAACIYITCRLKESSLMLL 147
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
D S+ + +NVYELG Y +L Q L+I + +DP I++ ++ +L L G KV
Sbjct: 148 DISDVVQVNVYELGRTYTKLAQELFI-----TIPVLDPCIYVTRYAQKLELEGDTHKVSL 202
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ GR+PSGLCGAAL V+A +G S D+V IV++ +T+ KRL
Sbjct: 203 TALRLLQRMKRDWMAIGRRPSGLCGAALLVAARMNGYNRSVQDLVGIVNMSTSTIRKRLT 262
Query: 180 EFENTDSGSLTIEDF 194
EF T SG L +++F
Sbjct: 263 EFAETPSGKLNLDEF 277
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 29/133 (21%)
Query: 333 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 392
E DG+ + IDD E+D Y+ +EE K +W N +L+
Sbjct: 435 EDGDGALDLDGIDDEEIDNYILTKEESALKAKMWVTENIGFLK----------------- 477
Query: 393 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 452
L+ +++ + AA K K+K ++ + N G T E +++L +K+
Sbjct: 478 ---------LEREKQIQKSRDAAAGKETKKKLKRSRKKLTNQG---TPGENFQKILQEKK 525
Query: 453 LSSKINYDVLEKL 465
+S KINYDVL+ +
Sbjct: 526 ISKKINYDVLKSI 538
>gi|323451551|gb|EGB07428.1| hypothetical protein AURANDRAFT_71825 [Aureococcus anophagefferens]
Length = 1025
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 124/202 (61%), Gaps = 8/202 (3%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
Q+ ++L +G V A R +G+A RNFT+GR+T V +CLY+ CR++ +LIDF
Sbjct: 493 QVASSLRLGA--HFVDGAHRLFGMAAQRNFTQGRKTLHVVCACLYVMCRREKSAHMLIDF 550
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTA 121
S+ L +NVY LGA +L+ ++L + L +DPS+++H+F +L G V TA
Sbjct: 551 SDVLQVNVYALGATFLKFRRLLNLE-----LPIIDPSLYIHRFAAKLELGDKCGAVATTA 605
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
++ MKRDWI TGR+P+G+C AAL V A HG ++ D+VK + +C T+ KRL +F
Sbjct: 606 LRVVQRMKRDWIETGRRPAGVCAAALLVGARAHGFHRTQDDVVKALRVCGMTVAKRLADF 665
Query: 182 ENTDSGSLTIEDFMARKKELHE 203
+ T + L++ +F R +L E
Sbjct: 666 QATPAAQLSLAEFNRRSDDLAE 687
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 14/128 (10%)
Query: 341 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 400
F+D+ D E+DG++ +EE K IW MN++YL ++ K+ AAA A P+
Sbjct: 822 FADVADDEIDGFILTDEEVKQKSEIWTTMNKDYLAQRDEKDKLAAARAEASAG-----PD 876
Query: 401 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 460
G + AK ++ +A A+ S ++TA EA ++ KKR S KINY
Sbjct: 877 G---------GPSDKAAKRGRKASAGKAKGARASKDSRTAKEALIDVVEKKRFSKKINYG 927
Query: 461 VLEKLFDD 468
VLE +F D
Sbjct: 928 VLEGIFGD 935
>gi|347971505|ref|XP_313145.5| AGAP004233-PA [Anopheles gambiae str. PEST]
gi|333468699|gb|EAA08645.5| AGAP004233-PA [Anopheles gambiae str. PEST]
Length = 688
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 139/477 (29%), Positives = 223/477 (46%), Gaps = 78/477 (16%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A F+ +A+ RN T+GRR + A+C+Y+ CR + LLID S+ L I YELG
Sbjct: 107 IETACNFFKMALIRNLTRGRRNTHIYAACVYITCRTEGTSHLLIDISDVLQICCYELGRT 166
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITT 135
YL+L Q L + + +DP I++ ++ ++L +V TA+ ++ MK+D I +
Sbjct: 167 YLKLSQSLCLN-----IPSIDPCIYIMRYANKLEFKEKTHEVSMTAQRLVQRMKKDSIHS 221
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+PSGLCGAAL ++A H + +DIV+IV I E+TL KRL EF T S +LT+++FM
Sbjct: 222 GRRPSGLCGAALLLAARMHDFSRTPNDIVRIVKIHESTLRKRLFEFGETPSSALTVDEFM 281
Query: 196 ARKKELHE---GVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGL 252
A E + A + ++ + E EF + +
Sbjct: 282 AVDLEAEQDPPAFKAARKRDKERLQKLEEQTT-------------------EFNQLQAEI 322
Query: 253 EGGADPPAFQVAERERMVKAS---AEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNC 309
+ D ++ ++ ++ +E F ES ++ K ++P G KN
Sbjct: 323 DAALDREMTRLGKKRKVKNVDFDELQETGQFIEESTMDVITECLKEETPGSGGGGREKNS 382
Query: 310 TTQTASNEGEGDHTKTPGVDATTEASD------GSDNF-------------SDIDDFEVD 350
+ S EG + A TE GS +F D+DD E++
Sbjct: 383 ANSSKSFIPEGMRPDLRAICANTEKERPAGEELGSGSFLPEGDVGEGELLTEDLDDDEIN 442
Query: 351 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 410
GY+ EEE K + WE++N EYL++ KE A +
Sbjct: 443 GYIMTEEEARTKNMQWEKLNEEYLKDMKIKEERLAKER---------------------- 480
Query: 411 AAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 467
+ + EK+++R + K GP+ +A EA +L +K++SSKINYD+L+ L D
Sbjct: 481 ------EEGKPEKKKRRNVKKKMFGPSPSAREAIEMILQEKKISSKINYDILKTLTD 531
>gi|325192948|emb|CCA27332.1| transcription factor IIIB putative [Albugo laibachii Nc14]
Length = 531
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 113/179 (63%), Gaps = 6/179 (3%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
V A R Y +A+ RNFT+GR++E V A+CLY+ CR++ P LLIDFS+ L NVY LG V
Sbjct: 107 VDSAFRLYALALQRNFTRGRKSEVVIAACLYIVCRRERSPHLLIDFSDALQWNVYVLGGV 166
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITT 135
+L+ C +L I L VDPS+++H+F +L L + ++ASMKRDWI T
Sbjct: 167 FLKFCNLLQIH-----LPLVDPSLYIHRFASQLRLKSKTHTIATIGLRLVASMKRDWIQT 221
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
GR+PSG+CGAAL ++A + S D++ +V+I E TL +RL EF +T LT +
Sbjct: 222 GRRPSGICGAALLIAARCQSVPCSFQDVMDVVNIGEHTLRRRLKEFADTPIAQLTYQQI 280
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 37/131 (28%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D+ SD+DD E+ G + EE K ++WE+MN E+ ++Q K +
Sbjct: 433 DSLSDLDDEEICGLILTPEEVDQKALLWEQMNGEFFKKQEEKRLIKGSTPPP-------- 484
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 458
+K++KR EA + P TA A ++ ++ IN
Sbjct: 485 -----------------------KKKRKRVMEA-DIPPPDTAQHAIYKLKSR-----NIN 515
Query: 459 YDVLEKLFDDS 469
YDV+ +LF DS
Sbjct: 516 YDVINELFGDS 526
>gi|392597143|gb|EIW86465.1| BRF1-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 639
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 120/185 (64%), Gaps = 9/185 (4%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVY 71
SD + A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+
Sbjct: 99 SDIVALAATRLYTLAVEHKFTKGRKSINVAAVCLYVACRQKETRNYMLIDFSDLLQVNVF 158
Query: 72 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMK 129
ELG +YLQL Q L + L VDPS ++ +F+ LL G++ KV A ++
Sbjct: 159 ELGHIYLQLVQTLNLR-----LPVVDPSHYISRFS-ALLEFGDETHKVATDAVRLVQRFD 212
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSL 189
RDW+T GR+P+G+CGAAL ++A + + S +IV++V I + TL KRL EF T SGSL
Sbjct: 213 RDWMTRGRRPAGICGAALLLAARMNNFRRSIEEIVQVVKIADTTLKKRLEEFRKTPSGSL 272
Query: 190 TIEDF 194
T+ DF
Sbjct: 273 TLADF 277
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 27/131 (20%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D ++D+ E+DG++ +E+E K+ IW EMNREYLE AAK
Sbjct: 444 DELMNLDEDELDGFILSEDEVRLKERIWVEMNREYLEALAAK------------------ 485
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 457
A++L + R++ K + SG TA E+ + ++ K R S +I
Sbjct: 486 ------AEQLEKGTTTVKTRKRRKTNTKPRDASTPSG--STAAESVQNLIKKNSRYSKRI 537
Query: 458 NYDVLEKLFDD 468
NYD L+ LF D
Sbjct: 538 NYDALKNLFVD 548
>gi|159127363|gb|EDP52478.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus fumigatus A1163]
Length = 749
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 143/495 (28%), Positives = 227/495 (45%), Gaps = 49/495 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 59
+ Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 139 INQLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVML 196
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVC 118
IDF++ L +NV++LG Y L L + ++ +DP +++F +L G +V
Sbjct: 197 IDFADVLMVNVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGTATMQVA 256
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 257 SEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITINQRL 316
Query: 179 IEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGL 237
EF +T+S LT++ F + + E H+ + G K S V K DT
Sbjct: 317 NEFSSTESAELTVDQFRSVQLENAHDPPSFTRAREGRKPS--RSVKRKASDTAAAIEGNT 374
Query: 238 CRSCYEEFMTISEGLEGGADP-----PAFQVAERERM----------VKASAEENSSFER 282
+ E + +G A P PA A+ R V + E ++ +
Sbjct: 375 QDATPAEPRRLD--ADGFAIPSLPIDPALTTADSGRRRASVTSVLNKVVSEVGEEAAIAK 432
Query: 283 ESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFS 342
S P + K+ P PE I + + + +G + +++ + + S
Sbjct: 433 -SARPAAPKRPKLPPPTPEQIASEEALENEMTALLSKGSNM----IESVASGREQENKVS 487
Query: 343 DI---------DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 393
D DD EV L + E K+ IW N++YL Q AK A A+A
Sbjct: 488 DRAEIDASEFEDDPEVANCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAEA---- 543
Query: 394 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 453
+ G++ ++ V + + + S PA EATRRML ++
Sbjct: 544 ---DSQPGMRKPRKRRRGRLGDVTYLEGDGEDADGRSTRASTPA----EATRRMLERRGF 596
Query: 454 SSKINYDVLEKLFDD 468
S KINY +LE LF D
Sbjct: 597 SKKINYRLLESLFGD 611
>gi|426192806|gb|EKV42741.1| hypothetical protein AGABI2DRAFT_78178, partial [Agaricus bisporus
var. bisporus H97]
Length = 590
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 122/185 (65%), Gaps = 9/185 (4%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVY 71
S+ +V A+R Y +AV FTKGR++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+
Sbjct: 96 SEVVVLAARRMYTLAVEHKFTKGRKSLNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVF 155
Query: 72 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMK 129
ELG YLQL Q+L + L VDPS ++ +F LL G++ KV A ++
Sbjct: 156 ELGHTYLQLVQILNLR-----LPLVDPSHYISRFA-ALLEFGDETHKVATDAVRLVQRFD 209
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSL 189
RDW+T GR+P+G+CGAAL ++A + + S +IV++V I + TL KRL EF+ T SGSL
Sbjct: 210 RDWMTKGRRPAGICGAALLLAARMNNFRRSIEEIVQVVKIADTTLKKRLDEFKATPSGSL 269
Query: 190 TIEDF 194
T+ DF
Sbjct: 270 TLADF 274
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 28/143 (19%)
Query: 338 SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 397
+D +D+ E++ ++ +E+E K+ +W E+NR+YLE A + L +S K
Sbjct: 385 ADELMGLDEEELNRFILSEDEVRIKERVWVELNRDYLEAIAGSIPGSRYIFHMLTSSQK- 443
Query: 398 CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSK 456
RK + + A S TA E+ R ++ K + S +
Sbjct: 444 ----------------------RKSNKPRDATTPSGS----TAAESVRNLIKKNPKYSKR 477
Query: 457 INYDVLEKLFDDSVCLYSISICL 479
INYD L+ LF D+ S S L
Sbjct: 478 INYDALKDLFVDTNTPPSFSQSL 500
>gi|409074474|gb|EKM74871.1| hypothetical protein AGABI1DRAFT_47247, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 662
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 122/185 (65%), Gaps = 9/185 (4%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVY 71
S+ +V A+R Y +AV FTKGR++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+
Sbjct: 102 SEVVVLAARRMYTLAVEHKFTKGRKSLNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVF 161
Query: 72 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMK 129
ELG YLQL Q+L + L VDPS ++ +F LL G++ KV A ++
Sbjct: 162 ELGHTYLQLVQILNLR-----LPLVDPSHYISRFA-ALLEFGDETHKVATDAVRLVQRFD 215
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSL 189
RDW+T GR+P+G+CGAAL ++A + + S +IV++V I + TL KRL EF+ T SGSL
Sbjct: 216 RDWMTKGRRPAGICGAALLLAARMNNFRRSIEEIVQVVKIADTTLKKRLDEFKATPSGSL 275
Query: 190 TIEDF 194
T+ DF
Sbjct: 276 TLADF 280
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 29/143 (20%)
Query: 338 SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 397
+D +D+ E++ ++ +++E K+ +W E+NR+YLE AAK
Sbjct: 458 ADELMGLDEEELNRFILSDDEVRIKERVWVELNRDYLEAIAAK----------------- 500
Query: 398 CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSK 456
G Q + A A ++ +++ + R A + TA E+ R ++ K + S +
Sbjct: 501 ---GYQ-----QDSTATAKSRKKRKSNKPRDATTPS---GSTAAESVRNLIKKNPKYSKR 549
Query: 457 INYDVLEKLFDDSVCLYSISICL 479
INYD L+ LF D+ S S L
Sbjct: 550 INYDALKDLFVDTNTPPSFSQSL 572
>gi|254568370|ref|XP_002491295.1| TFIIIB B-related factor [Komagataella pastoris GS115]
gi|238031092|emb|CAY69015.1| TFIIIB B-related factor [Komagataella pastoris GS115]
gi|328352187|emb|CCA38586.1| Transcription factor IIIB 70 kDa subunit [Komagataella pastoris CBS
7435]
Length = 568
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 130/499 (26%), Positives = 229/499 (45%), Gaps = 72/499 (14%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G +D I A ++ +A+ NF +GRR++ V A+CLY+ACR+ +LIDFS+ L I+
Sbjct: 100 LGIADYISDAAYLWFRLALTNNFVQGRRSQNVVAACLYIACRKVKTHHMLIDFSSRLQIS 159
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASM 128
VY +GA +L++ + L+I++ L DPS+F+ F ++L G +K KV A + M
Sbjct: 160 VYSVGATFLKMVKTLHISN----LPLADPSLFIQHFAEQLNFGNSKIKVIKDAVKLAHRM 215
Query: 129 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGS 188
DWI GR+P+G+ GA L ++A + + + +I + I E+T+ KRL EF+NT++
Sbjct: 216 ADDWIHEGRRPAGIAGACLMLAARMNNFRRTHLEIAAVAKIGESTIQKRLNEFKNTNASK 275
Query: 189 LTIEDFMA-----------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGK 231
L+I++F ++K + + + N + K + MN +L + + +
Sbjct: 276 LSIDEFRKATNIESTAPPSYTSNRIKEKAIQQMINHNNKYSEEKETVMNFILKDSEISSE 335
Query: 232 PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMV---------------KASAEE 276
+ + ++ + + P +V E +R + K
Sbjct: 336 EIRTYILKIQKQQREDLKRKVNQVVSPSPGEVGEIQRSIDEDEDDDDESEDESDKDGNTA 395
Query: 277 NS---SFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTE 333
NS SFER+ D+ + E + PKN + + G P
Sbjct: 396 NSIYNSFERQQQ-------DQARLIE---LNRPKNLHKLPTTGDLLGKIKSDP------- 438
Query: 334 ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 393
+N D+DD E++G+L E+E K+ +W +N ++L EQ + + K A
Sbjct: 439 -----ENLEDVDDEELEGFLLTEDESRIKERVWVGLNHDFLIEQEKRRLKEESDKLAGHT 493
Query: 394 SYKNC------PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 447
+ K +GL + A+ + + Q + + G +AL + + M
Sbjct: 494 TIKRRRKKNIDDDGLGIPKTELTEFASGLDPAALGLQ----SSINSIGEGSSALSSAKSM 549
Query: 448 LTKKRLSSKINYDVLEKLF 466
L KK S K+NY +E LF
Sbjct: 550 LQKKSYSKKLNYAAVENLF 568
>gi|432948464|ref|XP_004084058.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Oryzias
latipes]
Length = 690
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 112/174 (64%), Gaps = 6/174 (3%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ +AV+++ T+GR+TE V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 113 FFKLAVSKHLTRGRKTEHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 172
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 141
L I + +DP +++ +F L G +V TA +L MKRDW+ TGR+PSG
Sbjct: 173 ELCINAPA-----IDPCLYIPRFAHMLEFGLKTHEVSMTALRLLQRMKRDWMHTGRRPSG 227
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
LCGAAL V+A H + S D++ +V +C TL KRL EFE+T + LTI++FM
Sbjct: 228 LCGAALLVAARMHKFRRSVKDVISVVKVCHTTLRKRLTEFEDTPTSQLTIDEFM 281
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 63/138 (45%), Gaps = 29/138 (21%)
Query: 328 VDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAA 387
VD E S G + IDD E++ Y+ NE+E K +W + N EYL+EQ KE
Sbjct: 446 VDNPMEPS-GELDLEGIDDQEIEKYILNEKEVEVKTGLWMKQNAEYLQEQKEKE------ 498
Query: 388 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 447
E + +E K RK +Q + A TA EA +M
Sbjct: 499 ------------ERINKEKEQGIYKEKQKKKYRKREQIE----------ASTAEEAIEKM 536
Query: 448 LTKKRLSSKINYDVLEKL 465
L KK++SSKINYDVL L
Sbjct: 537 LEKKKISSKINYDVLRDL 554
>gi|302682668|ref|XP_003031015.1| hypothetical protein SCHCODRAFT_77245 [Schizophyllum commune H4-8]
gi|300104707|gb|EFI96112.1| hypothetical protein SCHCODRAFT_77245 [Schizophyllum commune H4-8]
Length = 543
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 125/194 (64%), Gaps = 9/194 (4%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLID 61
Q+ AL++ E + A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++LID
Sbjct: 91 QIAIALHLSEV--VRFAALRLYTLAVEHKFTKGRKSMNVAAVCLYVACRQKETRQYMLID 148
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDT 120
FS+ L +NV+ELG +YLQL Q L + L VDPS ++ +F L G ++V +
Sbjct: 149 FSDILEVNVFELGHIYLQLVQTLCLR-----LPLVDPSHYISRFAALLEFGDETQRVAND 203
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A ++ RDW+T GR+P+G+CGAAL ++A + + S +IV++V I + TL KRL E
Sbjct: 204 AVRLVQRFDRDWMTRGRRPAGICGAALLLAARMNNFRRSVEEIVQVVKIADVTLKKRLEE 263
Query: 181 FENTDSGSLTIEDF 194
F+NT SG+LT+ DF
Sbjct: 264 FKNTPSGALTLADF 277
>gi|70999253|ref|XP_754348.1| transcription factor TFIIIB complex subunit Brf1 [Aspergillus
fumigatus Af293]
gi|66851985|gb|EAL92310.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus fumigatus Af293]
Length = 748
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 143/495 (28%), Positives = 227/495 (45%), Gaps = 49/495 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 59
+ Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 139 INQLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVML 196
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVC 118
IDF++ L +NV++LG Y L L + ++ +DP +++F +L G +V
Sbjct: 197 IDFADALMVNVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGTATMQVA 256
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 257 SEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITINQRL 316
Query: 179 IEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGL 237
EF +T+S LT++ F + + E H+ + G K S V K DT
Sbjct: 317 NEFSSTESAELTVDQFRSVQLENAHDPPSFTRAREGRKPS--RSVKRKASDTAAAIEGNT 374
Query: 238 CRSCYEEFMTISEGLEGGADP-----PAFQVAERERM----------VKASAEENSSFER 282
+ E + +G A P PA A+ R V + E ++ +
Sbjct: 375 QDATPAEPRRLD--ADGFAIPSLPIDPALTTADSGRRRASVTSVLNKVVSEVGEEAAIAK 432
Query: 283 ESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFS 342
S P + K+ P PE I + + + +G + +++ + + S
Sbjct: 433 -SARPAAPKRPKLPPPTPEQIASEEALENEMTALLSKGSNM----IESVASGREQENKVS 487
Query: 343 DI---------DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 393
D DD EV L + E K+ IW N++YL Q AK A A+A
Sbjct: 488 DRAEIDASEFEDDPEVANCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAEA---- 543
Query: 394 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 453
+ G++ ++ V + + + S PA EATRRML ++
Sbjct: 544 ---DSQPGMRKPRKRRRGRLGDVTYLEGDGEDADGRSTRASTPA----EATRRMLERRGF 596
Query: 454 SSKINYDVLEKLFDD 468
S KINY +LE LF D
Sbjct: 597 SKKINYRLLESLFGD 611
>gi|428176989|gb|EKX45871.1| hypothetical protein GUITHDRAFT_71051 [Guillardia theta CCMP2712]
Length = 356
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 114/179 (63%), Gaps = 6/179 (3%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
V VA RF+ AV +NF +GRRT V A+CLY+ CR+ +LIDF+ L I+VY+LG V
Sbjct: 104 VEVAHRFFQQAVQKNFIQGRRTNSVVAACLYIVCRRLKTSHMLIDFAEVLQIDVYDLGNV 163
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITT 135
+L+ C+ L+I L +DPS+++ +F L +V TA I+A M R+W+ T
Sbjct: 164 FLKFCKELHIK-----LDPIDPSLYIRRFASMLEFEEKTHQVAHTALRIVARMNREWMIT 218
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
GR+P+G+CGA L ++A HG +++ I ++V IC+ TL KRL EF+ T + LT+ +F
Sbjct: 219 GRRPAGICGAGLIIAAKMHGFNRTETQIAQVVRICDGTLKKRLSEFDETGASDLTVSEF 277
>gi|119491136|ref|XP_001263190.1| transcription factor TFIIIB complex subunit Brf1, putative
[Neosartorya fischeri NRRL 181]
gi|119411350|gb|EAW21293.1| transcription factor TFIIIB complex subunit Brf1, putative
[Neosartorya fischeri NRRL 181]
Length = 752
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 142/495 (28%), Positives = 227/495 (45%), Gaps = 49/495 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 59
+ Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 146 INQLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVML 203
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVC 118
IDF++ L +NV++LG Y L L + ++ +DP +++F +L G +V
Sbjct: 204 IDFADVLMVNVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGTATMQVA 263
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 264 SEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITINQRL 323
Query: 179 IEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGL 237
EF +T+S LT++ F + + E H+ + G K S V K DT +
Sbjct: 324 NEFSSTESAELTVDQFRSVQLENAHDPPSFTRAREGRKPS--RSVKRKASDTAAEIEGDM 381
Query: 238 CRSCYEEFMTISEGLEGGADP-----PAFQVAERERM----------VKASAEENSSFER 282
+ E + +G A P PA A+ R V + + S+ +
Sbjct: 382 QDATPAEPRRLD--ADGFAIPSLPIDPALTTADSGRRRASVTSVLNEVVSEVGQESAIAK 439
Query: 283 ESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFS 342
S P + K+ P P+ I + + + +G + +++ + + S
Sbjct: 440 -SARPAAPKRPKLPPPTPDQIASEEALENEMTALLSKGSNM----IESVASGQEQENKVS 494
Query: 343 DI---------DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 393
D DD EV L + E K+ IW N++YL Q AK A A+A
Sbjct: 495 DRAEIDASEFEDDPEVANCLLSSAEVEIKERIWVHENKDYLRTQQAKALKRALAEA---- 550
Query: 394 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 453
+ G++ ++ V + + S PA EATRRML ++
Sbjct: 551 ---DSQPGMRKPRKRRRGRLGDVTYLEGDGDDADGRSTRASTPA----EATRRMLERRGF 603
Query: 454 SSKINYDVLEKLFDD 468
S KINY +LE LF D
Sbjct: 604 SKKINYRLLESLFGD 618
>gi|413946298|gb|AFW78947.1| hypothetical protein ZEAMMB73_193949 [Zea mays]
Length = 216
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 103/136 (75%), Gaps = 9/136 (6%)
Query: 135 TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
T RKPSGLCGAALY++AL+HG ++K+DIV +VH+CEATL KRLIEFENTDSGSLTIE+F
Sbjct: 4 TRRKPSGLCGAALYIAALSHGCNYTKADIVSVVHVCEATLTKRLIEFENTDSGSLTIEEF 63
Query: 195 MARKKELH-EGVAANLPNNGPKVSGMNEVLCKHKDTG-KPFACGLCRSCYEEFMTISEGL 252
+A E + E V+ + P +G E++CKHKD G + FA GLC CY +F +S GL
Sbjct: 64 LATADESNEEPVSKHSPKSG-------EIICKHKDKGFEHFAHGLCEKCYNKFTKLSGGL 116
Query: 253 EGGADPPAFQVAERER 268
EGG+ PPAFQ AE++R
Sbjct: 117 EGGSVPPAFQRAEKKR 132
>gi|426248972|ref|XP_004018226.1| PREDICTED: transcription factor IIIB 90 kDa subunit [Ovis aries]
Length = 798
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 122/196 (62%), Gaps = 8/196 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+++ T+GRRT V A+CLYL CR + P +L+
Sbjct: 236 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRRTAHVVAACLYLVCRTEGTPHMLL 293
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 294 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 348
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 349 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 408
Query: 180 EFENTDSGSLTIEDFM 195
EFE+T + LT+++FM
Sbjct: 409 EFEDTPTSQLTVDEFM 424
>gi|219129783|ref|XP_002185060.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403555|gb|EEC43507.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 601
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 121/195 (62%), Gaps = 8/195 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++++ + L +G V A R + IAV RNF +GRRT V A+CLY+ACRQ+ +LI
Sbjct: 164 IQEVASRLRLGT--HFVDAAHRLFTIAVERNFVQGRRTTHVVAACLYIACRQEKSQHMLI 221
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L +NVY LG +L+ ++L + L+ +DP++++++F L L V
Sbjct: 222 DFSDALQVNVYTLGTCFLKFRRLLGLK-----LEIIDPALYIYRFAAHLDLDEKANAVSL 276
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA ++A MKRDWI GR+P+G+C AAL +++ HG D+ +I+ +C T+ R+
Sbjct: 277 TALRLVARMKRDWIVAGRRPAGICAAALLIASRAHGFSRHHQDVTRILRVCGWTVTNRVK 336
Query: 180 EFENTDSGSLTIEDF 194
EFE+T S +LT+E F
Sbjct: 337 EFEHTPSAALTLEQF 351
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 23/130 (17%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D F++I + N+EE+ K++I+ ++N++YL Q KE+ + +A+L K
Sbjct: 471 DEFANI-------FRDNDEERE-KEVIFNKINKDYLVTQKRKESERLSVEASLLDREKT- 521
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 458
+ A A ++A +RK+K +K G T E + +++S KIN
Sbjct: 522 --------DAAQAESSARYNTRKKKSRK------ADGSIMTTEEQLLAAVAARKVSRKIN 567
Query: 459 YDVLEKLFDD 468
YD L +FD+
Sbjct: 568 YDALSSIFDE 577
>gi|428671958|gb|EKX72873.1| transcription factor IIIb subunit, putative [Babesia equi]
Length = 515
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 128/433 (29%), Positives = 198/433 (45%), Gaps = 60/433 (13%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
AL + S E ++ A+ Y +AV RNFT GR V + CLY CR++ P LLIDFS+ L
Sbjct: 91 ALRLNLSPEHINKAQAIYKLAVQRNFTMGRNNLHVASCCLYTVCRREKTPHLLIDFSDIL 150
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDIL 125
V +G ++++L ++L+I+ + VDPSIF +F +L N +KV T I+
Sbjct: 151 QTPVKTIGQIFMKLVRMLHIS-----VPNVDPSIFFERFASKLYLKDNIQKVISTGVRII 205
Query: 126 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 185
+M RDW+ TGR+P+GLCGAAL V+A HG+ D+ +V I T+MKRL EF++T
Sbjct: 206 QAMNRDWLCTGRRPTGLCGAALVVAARFHGISLPAEDVAAVVRISHPTIMKRLSEFKDTC 265
Query: 186 SGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEF 245
+ L +F K +L LPN +++ K + K
Sbjct: 266 AAHLKCSEF--EKVDLD-----TLPNIKLPPCLISKYAAKERKYAK-------------- 304
Query: 246 MTISEGLEGGADPPAFQVAERERMVKASAEENSS---FERESDSPFMSRVDKVQSPEPES 302
L+G +D AE + K AE +S+ F+R+SD P +S + P +
Sbjct: 305 -----SLDGRSDVSTTDTAEYDLRGKDYAETDSTYSDFDRQSD-PCLSENSPILGPINVN 358
Query: 303 IGVPKNCTTQ--------TASNEGEGDHTKTPGV------DATTEASDGSDNFSDIDDFE 348
I C Q A + E P + + T D + D +D +
Sbjct: 359 IPTDVLCNDQPTAAQINNIAQSILENFKVNQPSIGGLCKFNETESCEDSELSSDDEEDIQ 418
Query: 349 VDG-YLHNEEEKHYKKIIWEEMNREYLE-------EQAAKEAAAAAAKAA--LEASYKNC 398
V + E EK K +W+E+ ++ ++ E+ +E + A K Y +
Sbjct: 419 VFAEMILPESEKESKTKLWDEITKDIMQKVMRRQKERKKREESGQAIKKRKYTRRKYMDY 478
Query: 399 PEGLQAAQELAAA 411
PE AA+ A
Sbjct: 479 PEANNAAESTKMA 491
>gi|83770830|dbj|BAE60963.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870227|gb|EIT79413.1| transcription initiation factor TFIIIB, Brf1 subunit [Aspergillus
oryzae 3.042]
Length = 734
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 141/495 (28%), Positives = 233/495 (47%), Gaps = 46/495 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 59
+ Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 124 INQLARALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVML 181
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVC 118
IDF++ L INV++LG Y L + L + ++ +DP +++F +L G +V
Sbjct: 182 IDFADVLMINVFKLGRTYKALLEELRLGGNVFLMNPIDPESLIYRFAKQLEFGAATMQVA 241
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 242 SEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRL 301
Query: 179 IEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGL 237
EF T+SG LT++ F + + E H+ + G K S + +T L
Sbjct: 302 NEFGATESGELTVDQFRSVQLENAHDPPSFTRAREGRKPS--RSFKRRPTETAADIEGDL 359
Query: 238 CRSC--------YEEFMTISEGLEGGADP--PAFQVAERERMVKASAEENSSFERESDSP 287
+ ++ ++G + P PA A+ ER + ++ E+ ++P
Sbjct: 360 TDAATTPSNIAPQQQKRVDADGFAIPSLPIDPALIAADGERRMSTTSVESEIAPEVGENP 419
Query: 288 FM--------SRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSD 339
S+ + +P P+ I + + + +G + +++TT
Sbjct: 420 GKPARGRPKGSKARPLPTPTPDQIASEEALENEMTAYLTKGSNM----IESTTVPRKAVS 475
Query: 340 NFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 393
++ID D EV L + E K+ IW N++YL Q AK A K ALE
Sbjct: 476 ESAEIDEAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRALEE 530
Query: 394 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 453
+ + G+ ++ V + + + + S PA EATRRML ++
Sbjct: 531 A--DSQPGMHKPRKRRRGRLGDVTYLQGDGEDGDGRSTRASTPA----EATRRMLERRGF 584
Query: 454 SSKINYDVLEKLFDD 468
S KINY +LE LF +
Sbjct: 585 SKKINYRLLESLFGE 599
>gi|378754531|gb|EHY64562.1| transcription initiation factor IIB [Nematocida sp. 1 ERTm2]
Length = 513
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 128/193 (66%), Gaps = 8/193 (4%)
Query: 2 RQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 61
+ + AL IG+S ++ A R+Y +++ NFTKGR+T+ + A+CLY+ CR++ P +L+D
Sbjct: 82 KSIGEALGIGDSQ--INSAMRWYNLSLQFNFTKGRKTQVLLAACLYITCREEETPHMLVD 139
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
F+ L INV+++G+++L+L ++L I + VDPS+F+ +F +L N+ + TA
Sbjct: 140 FAYILRINVFKIGSIFLKLIRLLNIT-----MPLVDPSLFVPRFCSKL-SLNNQSIGKTA 193
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
++A M RDWI GRKP+G+CGAA+ +++ HG + + D+ V +CEAT+ KRL E
Sbjct: 194 LRLIARMDRDWIVIGRKPAGICGAAILIASRIHGNERTVEDVAGAVRVCEATINKRLAEL 253
Query: 182 ENTDSGSLTIEDF 194
+ T + +L+I +F
Sbjct: 254 KETATANLSINEF 266
>gi|348536305|ref|XP_003455637.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Oreochromis niloticus]
Length = 700
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 122/196 (62%), Gaps = 8/196 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++Q+ + L + + + A F+ + V+++ T+GR+TE V A+CLYL CR + P +L+
Sbjct: 93 IQQLGSQLQLNQ--HCLDTAFNFFKLVVSKHLTRGRKTEHVIAACLYLVCRTEGTPHMLL 150
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G +V
Sbjct: 151 DLSDLLQVNVYILGKTFLLLARELCINAPA-----IDPCLYIPRFAHMLEFGAKTHEVSM 205
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA ++ MKRDW+ TGR+PSGLCGAAL V+A H + S D++ +V +C+ TL KRL
Sbjct: 206 TALRLVQRMKRDWMHTGRRPSGLCGAALLVAARMHKFRRSVKDVIGVVKVCQTTLRKRLT 265
Query: 180 EFENTDSGSLTIEDFM 195
EFE+T + LTI++FM
Sbjct: 266 EFEDTPTSQLTIDEFM 281
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 73/171 (42%), Gaps = 42/171 (24%)
Query: 298 PEPESIGVPKNCTTQTASNEGE---GDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 354
P S+ + + T S GE GDH ++ +D IDD E+D Y+
Sbjct: 429 PSAASLSLQQTFQTSDTSESGEKDLGDHPQSEELD-----------LEGIDDQEIDKYIL 477
Query: 355 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 414
NE+E K +W + N EYL+EQ K+ E + +E
Sbjct: 478 NEKEVQVKTELWMKQNAEYLKEQKEKQ------------------ERINKEKEEGTYKEK 519
Query: 415 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
KS+K Q + A TA EA RML KK++SSKINYDVL L
Sbjct: 520 KKKKSKKRDQIE----------ALTAGEAIERMLEKKKISSKINYDVLRDL 560
>gi|441666045|ref|XP_004091858.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa
subunit [Nomascus leucogenys]
Length = 699
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 121/196 (61%), Gaps = 8/196 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 180 EFENTDSGSLTIEDFM 195
EFE+T + LTI++FM
Sbjct: 266 EFEDTPTSQLTIDEFM 281
>gi|317137549|ref|XP_001727802.2| transcription factor TFIIIB complex subunit Brf1 [Aspergillus
oryzae RIB40]
Length = 745
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 141/495 (28%), Positives = 233/495 (47%), Gaps = 46/495 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 59
+ Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 146 INQLARALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVML 203
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVC 118
IDF++ L INV++LG Y L + L + ++ +DP +++F +L G +V
Sbjct: 204 IDFADVLMINVFKLGRTYKALLEELRLGGNVFLMNPIDPESLIYRFAKQLEFGAATMQVA 263
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 264 SEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRL 323
Query: 179 IEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGL 237
EF T+SG LT++ F + + E H+ + G K S + +T L
Sbjct: 324 NEFGATESGELTVDQFRSVQLENAHDPPSFTRAREGRKPS--RSFKRRPTETAADIEGDL 381
Query: 238 CRSC--------YEEFMTISEGLEGGADP--PAFQVAERERMVKASAEENSSFERESDSP 287
+ ++ ++G + P PA A+ ER + ++ E+ ++P
Sbjct: 382 TDAATTPSNIAPQQQKRVDADGFAIPSLPIDPALIAADGERRMSTTSVESEIAPEVGENP 441
Query: 288 FM--------SRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSD 339
S+ + +P P+ I + + + +G + +++TT
Sbjct: 442 GKPARGRPKGSKARPLPTPTPDQIASEEALENEMTAYLTKGSNM----IESTTVPRKAVS 497
Query: 340 NFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 393
++ID D EV L + E K+ IW N++YL Q AK A K ALE
Sbjct: 498 ESAEIDEAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRALEE 552
Query: 394 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 453
+ + G+ ++ V + + + + S PA EATRRML ++
Sbjct: 553 A--DSQPGMHKPRKRRRGRLGDVTYLQGDGEDGDGRSTRASTPA----EATRRMLERRGF 606
Query: 454 SSKINYDVLEKLFDD 468
S KINY +LE LF +
Sbjct: 607 SKKINYRLLESLFGE 621
>gi|395504300|ref|XP_003756493.1| PREDICTED: transcription factor IIIB 90 kDa subunit, partial
[Sarcophilus harrisii]
Length = 619
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 114/174 (65%), Gaps = 6/174 (3%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 51 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 110
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 141
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 111 ELCINAPA-----IDPCLYIPRFAHMLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 165
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
LCGAAL V+A H + + +++++V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 166 LCGAALLVAARMHDFRRTVKEVIRVVKVCESTLRKRLTEFEDTPTSQLTIDEFM 219
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 27/174 (15%)
Query: 292 VDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDG 351
+D ++ P E++ P E + + + DG + + IDD E+D
Sbjct: 342 IDPIKPPALETLLGPLPTAASLGITESIRECISPQNREPNENSGDGELDLNGIDDSEIDR 401
Query: 352 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 411
Y+ NE E K +W + + +Y++EQ KEA A K EL
Sbjct: 402 YILNENEAQIKAELWMKEHADYVKEQKEKEARIAKEK------------------ELGIY 443
Query: 412 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
KE + K++++ + A TA EA +ML +K++SSKINY+VL L
Sbjct: 444 ---------KEHKPKKSSKKREPIQASTAGEAIEKMLEQKKISSKINYNVLRDL 488
>gi|194743354|ref|XP_001954165.1| GF16885 [Drosophila ananassae]
gi|190627202|gb|EDV42726.1| GF16885 [Drosophila ananassae]
Length = 665
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 138/481 (28%), Positives = 223/481 (46%), Gaps = 93/481 (19%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
A F+ +A++R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALSRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 137
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM-- 195
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFNRTLLDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFMTV 284
Query: 196 -------------ARKK--------------ELHEGVAANLPNN-GPKVSGMNEVLCKHK 227
ARKK EL + + A+L + G + + + L K
Sbjct: 285 DLEREQDPPSFKAARKKDRERIKDIGEQELTELQKQIDAHLEKDLGKYANSVFQKLAHGK 344
Query: 228 DTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSP 287
T + +S E + + E + F ++K +++ ++
Sbjct: 345 STTITSSPSTPKSISENELEMEESRQ-------FIEQSNAEVIKDLIDKDEGVKKVEPGG 397
Query: 288 FMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDF 347
+S ++ ++ P+ E+I C T S+ + + TK P TE N ++D
Sbjct: 398 LVSGIEGLR-PDIEAI-----CRV-TQSDLEDVERTKAP---QETELFIEDLNDDELDQ- 446
Query: 348 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 407
Y+ EEE K +W+ +N EYL EQ +E
Sbjct: 447 ----YVLTEEEAVSKLDMWKNLNAEYLREQQERE-------------------------- 476
Query: 408 LAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINYDVLEK 464
+AK R+E + +R GP+ TA EA +ML +K++SSKINY++L+
Sbjct: 477 ------ERLAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINYEILKT 530
Query: 465 L 465
L
Sbjct: 531 L 531
>gi|328871796|gb|EGG20166.1| TATA box-binding protein-associated factor [Dictyostelium
fasciculatum]
Length = 750
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 121/191 (63%), Gaps = 6/191 (3%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A +G D + + R Y A+ FTKGR T+ V A+CLY CR++ P LLIDFS +
Sbjct: 85 AGQVGLKDVHIDMGVRLYETAMDFKFTKGRSTQIVSATCLYTVCRRELTPHLLIDFSEAI 144
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDIL 125
+NV+ L + +L+ Q L L VDP++F+ +F L ++V +TA ++
Sbjct: 145 QLNVFVLASTFLKFIQTLGFQ-----LPLVDPALFIQRFAVGLEFEQKTQEVANTALKLV 199
Query: 126 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 185
A MKRDW++ GR+PSG+CGA+L+++A HG K + +IV++V I E T++KRL EF++T
Sbjct: 200 ARMKRDWMSIGRRPSGICGASLFIAAKIHGFKRTVKEIVQVVKIGEDTIIKRLKEFKDTP 259
Query: 186 SGSLTIEDFMA 196
S +LTI++F A
Sbjct: 260 SAALTIDEFDA 270
>gi|444705816|gb|ELW47205.1| Transcription factor IIIB 90 kDa subunit [Tupaia chinensis]
Length = 620
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 143/469 (30%), Positives = 217/469 (46%), Gaps = 80/469 (17%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 64 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 123
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 141
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 124 ELCINAPA-----IDPCLYIPRFAHLLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSG 178
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM------ 195
LCGAAL V+A H + + ++V +V +CE+TL KRL EFE+T + LTIE+FM
Sbjct: 179 LCGAALLVAARMHDFRRTVKEVVSVVKVCESTLRKRLTEFEDTPTSQLTIEEFMRIDLEE 238
Query: 196 -------------ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 242
R K+L + ++ L ++S + + + +P A G
Sbjct: 239 ECDPPSYTAGQKKQRMKQLEQVLSKQLEEVEGEISSYQDEIEIELENSRPRAKG------ 292
Query: 243 EEFMTISEGLEGGADPPAF--QVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEP 300
+ +G A AF + E E + A++ N F +E + R +
Sbjct: 293 -PLPGLKDGSTEDATSSAFGDEDPEDEELEAAASHLNKDFYQE-----LLRGGSAMG-DS 345
Query: 301 ESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNE 356
E+ GVP A + G D + + G D + DG + S IDD E+D H
Sbjct: 346 EATGVPDETCRPPALDLGISDSIRECIASQGRDPKDTSGDGELDLSGIDDLEIDRVSHR- 404
Query: 357 EEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAV 416
+ R + +A KEA A K EL
Sbjct: 405 --------VGAPGPRSQPQLRAEKEARIAKEK------------------ELGVY----- 433
Query: 417 AKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
KE + K++ + + A TA EA +ML +KR+SSKI+Y VL L
Sbjct: 434 ----KEHKPKKSGKRREPILASTAGEAIEKMLEQKRISSKIDYSVLRGL 478
>gi|403412356|emb|CCL99056.1| predicted protein [Fibroporia radiculosa]
Length = 715
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 127/197 (64%), Gaps = 11/197 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLL 59
++Q+ NA+++ E + A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++L
Sbjct: 115 IQQVANAMHLSEV--VCLSATRLYTLAVEHKFTKGRKSMNVVAVCLYVACRQKETRNYML 172
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KV 117
IDFS+ L +NV+ELG YLQL Q L + L VDPS ++ +F LL G++ +V
Sbjct: 173 IDFSDMLQVNVFELGHTYLQLVQTLNLR-----LPLVDPSHYVSRFA-ALLEFGDETHQV 226
Query: 118 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
A ++A RDW+T GR+P+G+CGA L ++A + + S ++IV++V I + TL KR
Sbjct: 227 ALDATRLVARFDRDWMTRGRRPAGICGACLLLAARMNNFRRSVAEIVQVVKIADTTLKKR 286
Query: 178 LIEFENTDSGSLTIEDF 194
L EF T SG+LT+ DF
Sbjct: 287 LDEFRRTPSGALTLADF 303
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 28/134 (20%)
Query: 337 GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 396
G D +D+ E+D ++ EEE K+ +W E+N++YLE AA+E
Sbjct: 504 GDDELLGLDEDELDQFILTEEEVRIKERVWVELNKDYLEAIAAREER------------- 550
Query: 397 NCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK--RLS 454
Q A++ + K RK + R A S P+ + + + R L KK + S
Sbjct: 551 ------QHAEDKEKSGG---RKRRKTSNKPRDA----STPSGSTVAESVRNLIKKNPKYS 597
Query: 455 SKINYDVLEKLFDD 468
+INYD L+ LF D
Sbjct: 598 KRINYDALKNLFVD 611
>gi|340372189|ref|XP_003384627.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Amphimedon queenslandica]
Length = 649
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 113/180 (62%), Gaps = 6/180 (3%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ +A F+ +A+ N T+GR++ + +CLYL CR + P +L+DFS+ L INVY LG
Sbjct: 84 IDMAFGFFKMALQLNLTRGRKSSIMDTACLYLVCRSEGTPHMLLDFSDVLQINVYSLGRA 143
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITT 135
YL+L L+I + +DP +++H+F +L G V TA ++A MKRDWI
Sbjct: 144 YLRLSTALHINPPA-----LDPCLYIHRFAHKLELGDKVHDVSMTALRLVARMKRDWIHH 198
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+P+GLCGAAL V+A H S I KIV + EAT+ KRL +F+NT S LTIE+F+
Sbjct: 199 GRRPAGLCGAALLVAARLHNFNRSVKQISKIVKLSEATIRKRLDDFQNTPSSCLTIEEFL 258
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 340 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCP 399
+ IDD E++ L +EEE K +W N ++L+E + +K SY N
Sbjct: 385 DLEGIDDEEIEQMLLSEEEVKIKSQLWFAENGDFLKEMEGPQLLNYFSK-----SYMN-- 437
Query: 400 EGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINY 459
+ + LAA A K + + + PA TA EA RML +K+LSSKINY
Sbjct: 438 PTIARKERLAAVEAKKEGNKGKRTVHRPKKDRTHQSPAATAGEAIERMLVEKKLSSKINY 497
Query: 460 DVLEKL 465
DVL L
Sbjct: 498 DVLRDL 503
>gi|326921138|ref|XP_003206821.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Meleagris
gallopavo]
Length = 737
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 113/174 (64%), Gaps = 6/174 (3%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 170 FFKMAVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 229
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 141
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 230 ELCINAPA-----IDPCLYIPRFAHMLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSG 284
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
LCGAAL V+A H + + +++++V +CE+TL KRL EFE T + LTI++FM
Sbjct: 285 LCGAALLVAARMHDFRRTVKEVIRVVKVCESTLRKRLTEFEYTPTSQLTIDEFM 338
>gi|341899796|gb|EGT55731.1| CBN-BRF-1 protein [Caenorhabditis brenneri]
Length = 734
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 183/392 (46%), Gaps = 75/392 (19%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
++ A F+ + V+RN T+GR V A CLY+ CR ++ LL+DFS+ INV++LG
Sbjct: 102 MNTAFNFFKMCVSRNLTRGRNRSSVVAVCLYITCRLENTAHLLLDFSDVTQINVFDLGRN 161
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITT 135
+ + L I L DP +++ +F L G +K V + A ++ MKRDW++T
Sbjct: 162 LNFISRALRIN-----LPSTDPCLYIMRFACVLDFGDRQKEVVNLATRLVQRMKRDWMST 216
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+P+G+CGAAL ++A + S SDIV++VHI E+ + KRL EF T SGSLTI++F
Sbjct: 217 GRRPTGICGAALLIAARSMNFNRSISDIVRVVHISESVIRKRLDEFSQTPSGSLTIDEFS 276
Query: 196 ---------------ARKKELHEGVAANLPNNGPKVSGMNEVLC--------------KH 226
AR+K E L + M + L K
Sbjct: 277 TVDLEHSEDPPAYREARRKAREE----QLRKEAEQADAMRDQLGEMEADVEAALDKKRKE 332
Query: 227 KDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKA---SAEENSSFERE 283
K + PFA IS GL + AE E MV+ ++ ++ E
Sbjct: 333 KFSKSPFA-----------KLISGGL-------GLEYAEAEEMVRKDVIASVMKAAEEEP 374
Query: 284 SDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSD 343
S M + DK + P ES+G+ ++ T TA E T+ P +D E
Sbjct: 375 CSSNTMEKFDKYR-PSLESLGIRRSVDTPTA----EHRSTEIPIIDLEDE---------- 419
Query: 344 IDDFEVDGYLHNEEEKHYKKIIWEEMNREYLE 375
I D E+D Y+ E E K W + N E ++
Sbjct: 420 ISDTEIDSYILTESEVAIKTDYWMKANGEVMK 451
>gi|301787049|ref|XP_002928941.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Ailuropoda melanoleuca]
Length = 863
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 121/196 (61%), Gaps = 8/196 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+
Sbjct: 279 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 336
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 337 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGDKNHEVSM 391
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 392 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 451
Query: 180 EFENTDSGSLTIEDFM 195
EFE+T + LT+++FM
Sbjct: 452 EFEDTPTSQLTVDEFM 467
>gi|118092254|ref|XP_421405.2| PREDICTED: transcription factor IIIB 90 kDa subunit [Gallus gallus]
Length = 681
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 121/196 (61%), Gaps = 8/196 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+
Sbjct: 94 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLL 151
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 152 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHMLEFGDKNHEVSM 206
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++++V +CE+TL KRL
Sbjct: 207 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVIRVVKVCESTLRKRLT 266
Query: 180 EFENTDSGSLTIEDFM 195
EFE T + LTI++FM
Sbjct: 267 EFEYTPTSQLTIDEFM 282
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 64/130 (49%), Gaps = 27/130 (20%)
Query: 336 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 395
DG + S IDD E+D Y+ NE E K +W + N +YL+EQ KEA A K
Sbjct: 449 DGELDLSGIDDSEIDRYILNETEAQIKAELWMKENADYLKEQKEKEARIAKEK------- 501
Query: 396 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 455
EL KE + K+AA+ + A TA EA +ML +K++SS
Sbjct: 502 -----------ELGIY---------KEHKPKKAAKKREPIQASTAGEAIEKMLEQKKISS 541
Query: 456 KINYDVLEKL 465
KINY+VL L
Sbjct: 542 KINYNVLRDL 551
>gi|431839340|gb|ELK01267.1| Transcription factor IIIB 90 kDa subunit [Pteropus alecto]
Length = 823
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 112/174 (64%), Gaps = 6/174 (3%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ +AV++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 258 FFKMAVSKRLTRGRKMAHVVAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 317
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 141
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 318 ELCINAPA-----IDPCLYIPRFAHLLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSG 372
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 373 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM 426
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 329 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 388
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 583 DPKDASGDGELDLSGIDDLEIDRYILNEAEARVKAELWMRENAEYLREQREKEARIAKEK 642
Query: 389 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 448
EL KE + K++ + + A TA EA +ML
Sbjct: 643 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAGEAIEKML 675
Query: 449 TKKRLSSKINYDVLEKL 465
+KRLSSKI+Y VL L
Sbjct: 676 EQKRLSSKIDYSVLRGL 692
>gi|241730148|ref|XP_002412272.1| transcription initiation factor IIB, putative [Ixodes scapularis]
gi|215505511|gb|EEC15005.1| transcription initiation factor IIB, putative [Ixodes scapularis]
Length = 619
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 111/180 (61%), Gaps = 6/180 (3%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A FY +A+ R+ T+GRR V A+C+Y+ CR + P +L+D S+ + +NVYELG
Sbjct: 106 IDTAFNFYKMALTRHLTRGRRHSHVVAACIYMVCRIEGTPHMLLDLSDVVQVNVYELGKT 165
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITT 135
+L+L L I + +DP +++ +F L +V TA ++ MKRDW+ T
Sbjct: 166 FLKLSSALCIN-----IPAIDPCLYIVRFAHHLEFADKTHEVSMTALRLVQRMKRDWMHT 220
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+PSGLCGAAL V++ H + D+V++V +CE T+ KRL EF +T S LT+E+FM
Sbjct: 221 GRRPSGLCGAALLVASRLHDFSRTIKDLVRVVKVCETTIRKRLTEFGDTPSSRLTLEEFM 280
>gi|294949376|ref|XP_002786166.1| transcription initiation factor brf1, putative [Perkinsus marinus
ATCC 50983]
gi|239900323|gb|EER17962.1| transcription initiation factor brf1, putative [Perkinsus marinus
ATCC 50983]
Length = 597
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 118/177 (66%), Gaps = 3/177 (1%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
AKR + +A RNFT GR+T V A+CLY+ CR+ P+LLIDFS+ L+I+V E+G +Y++
Sbjct: 104 AKRLFSLAAQRNFTAGRKTSVVAAACLYIVCRRDRTPYLLIDFSDVLHISVREIGQMYMK 163
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRK 138
L ++L + D+ + +DPS+F+ +F+ L G + +V TA ++ M RDWI TGR+
Sbjct: 164 LVRLLSL-DKVLDIPVIDPSMFMERFSSHLGLGDKQNQVVHTAIRLIQLMSRDWICTGRR 222
Query: 139 PSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
P+GLCGAAL ++A HG++ + + + +V I TL +RL E ++T + +LT E F
Sbjct: 223 PTGLCGAALLIAARYHGVEDVTANSVAGVVRIGAVTLKRRLYELKHTPTAALTTEQF 279
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 24/130 (18%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
++ SD+ D E++GYL EE K IW + N+ YL E A ++ A + A + + +N
Sbjct: 488 ESISDVSDSEIEGYLLTPEESEAKSAIWHQWNKPYLMEWAIRDEQRKAKRRAEDEAKRNG 547
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK--RLSSK 456
K +KR + GPA +ALEAT+ L+KK LS++
Sbjct: 548 ----------------------TYKPRKRPIHSAPMGPADSALEATQMALSKKARSLSNR 585
Query: 457 INYDVLEKLF 466
+N LE+LF
Sbjct: 586 VNMSALEELF 595
>gi|345804203|ref|XP_548005.3| PREDICTED: transcription factor IIIB 90 kDa subunit [Canis lupus
familiaris]
Length = 812
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 121/196 (61%), Gaps = 8/196 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+
Sbjct: 228 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 285
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 286 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 340
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 341 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 400
Query: 180 EFENTDSGSLTIEDFM 195
EFE+T + LT+++FM
Sbjct: 401 EFEDTPTSQLTVDEFM 416
>gi|354473188|ref|XP_003498818.1| PREDICTED: hypothetical protein LOC100753600 [Cricetulus griseus]
Length = 1450
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 112/174 (64%), Gaps = 6/174 (3%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 887 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 946
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 141
L I +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 947 ELCIN-----APAIDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 1001
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 1002 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFM 1055
>gi|358054427|dbj|GAA99353.1| hypothetical protein E5Q_06048 [Mixia osmundae IAM 14324]
Length = 636
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 123/197 (62%), Gaps = 6/197 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
MR++ N+L+I E + A R++ +A+ F +GR+T+ V A+CLYLACR +LI
Sbjct: 94 MRELANSLSIEE--RVTDAASRWFTLAIHSTFNRGRKTDHVVAACLYLACRHNKMTLMLI 151
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCD 119
DFS+ L +NV+ LG YL+L + L +++ + VDPSI++ +F L G + +V
Sbjct: 152 DFSDLLQVNVFVLGQTYLKLVKNLNMSER---VPLVDPSIYIQRFAALLEFGKDTTQVSL 208
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A ++ M RDW+ TGR+P+G+CGAAL ++A + + + ++ ++V I + TL KRL
Sbjct: 209 DASRLIQRMDRDWMLTGRRPAGVCGAALVIAARMNDYRRTLLEVTQVVKIADITLRKRLD 268
Query: 180 EFENTDSGSLTIEDFMA 196
EF T S LT+E+F A
Sbjct: 269 EFRQTQSSDLTVEEFRA 285
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 32/137 (23%)
Query: 336 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 395
D + + SD+D+ E+D Y+ + ++ K +W NR+YLE AAK+
Sbjct: 459 DAAGSLSDLDEDELDEYILSAADREAKTRLWITFNRDYLENAAAKQ-------------- 504
Query: 396 KNCPEGLQAAQELAAAAAAAVAKSR-KEKQQKRAAEAKNSG-PAQTALEATRRML-TKKR 452
+N E K R K + +KR E + G PA TA EA ML +KKR
Sbjct: 505 RNADEE---------------GKPRPKPRARKRKKEEDSPGLPAATAGEAATIMLQSKKR 549
Query: 453 LSSKINYDVLEKLFDDS 469
+S K+NYDV+ +L ++
Sbjct: 550 VSKKLNYDVVSRLLQET 566
>gi|238489759|ref|XP_002376117.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus flavus NRRL3357]
gi|220698505|gb|EED54845.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus flavus NRRL3357]
Length = 1098
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 142/495 (28%), Positives = 227/495 (45%), Gaps = 63/495 (12%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 59
+ Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 146 INQLARALNIPESAS--KAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVML 203
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVC 118
IDF++ L INV++LG Y L + L + ++ +DP +++F +L G +V
Sbjct: 204 IDFADVLMINVFKLGRTYKALLEELRLGGNVFLMNPIDPESLIYRFAKQLEFGAATMQVA 263
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 264 SEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRL 323
Query: 179 IEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGL 237
EF T+SG LT++ F + + E H+ + G K S + +T L
Sbjct: 324 NEFGATESGELTVDQFRSVQLENAHDPPSFTRAREGRKPS--RSFKRRPTETAADIEGDL 381
Query: 238 CRSCY--------EEFMTISEGLEGGADP--PAFQVAERERMVKASAEENSSFERESDSP 287
+ ++ ++G + P PA A+ ER + ++ E+ ++P
Sbjct: 382 TDAATTPSNIAPQQQKRVDADGFAIPSLPIDPALIAADGERRMSTTSVESEIAPEVGENP 441
Query: 288 FM--------SRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSD 339
S+ + +P P+ I + + + +G + +++TT
Sbjct: 442 GKPARGRPKGSKARPLPTPTPDQIASEEALENEMTAYLTKGSNM----IESTTVPRKAVS 497
Query: 340 NFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 393
++ID D EV L + E K+ IW N++YL Q AK A K ALE
Sbjct: 498 ESAEIDEAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRALEE 552
Query: 394 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 453
A S+ + R S A T EATRRML ++
Sbjct: 553 -----------------------ADSQPGMHKPRKRRRGRSTRASTPAEATRRMLERRGF 589
Query: 454 SSKINYDVLEKLFDD 468
S KINY +LE LF +
Sbjct: 590 SKKINYRLLESLFGE 604
>gi|348527462|ref|XP_003451238.1| PREDICTED: transcription factor IIIB 90 kDa subunit, partial
[Oreochromis niloticus]
Length = 606
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 113/177 (63%), Gaps = 6/177 (3%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A FY +A+ ++ T+GR+ V A+C+Y+ CR + P +L+D S+ L +NVY LG +L
Sbjct: 21 ALNFYKMALIKHLTRGRKASHVIAACIYMVCRTEGTPHMLLDLSDILQVNVYVLGRTFLV 80
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRK 138
L + L I + +DP +++ +F L G ++V TA ++ MKRDW+ TGR+
Sbjct: 81 LARELCINAAA-----IDPCLYIPRFAQMLEFGDKTREVSMTALRLVQRMKRDWMHTGRR 135
Query: 139 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
PSGLCGAAL V+A H + + +IV IV +CE+TL KRL EFE+T + LTIE+FM
Sbjct: 136 PSGLCGAALLVAARLHDFRRTVKEIVNIVKVCESTLRKRLTEFEDTPTSQLTIEEFM 192
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 27/132 (20%)
Query: 334 ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 393
A G + S I+D E++ YL +++E K +W N YL+EQ KEA A K
Sbjct: 372 ADSGELDLSGINDSEIELYLLSDKEVKIKTALWMAENSTYLKEQKEKEAKIAKEK----- 426
Query: 394 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 453
A + K RK + R A TA EA +ML +KR+
Sbjct: 427 -------------------ALGIYKERKPRGPNRKHPPIR---ANTADEAIEKMLEQKRI 464
Query: 454 SSKINYDVLEKL 465
SSKINYDVL+ L
Sbjct: 465 SSKINYDVLKDL 476
>gi|402221210|gb|EJU01279.1| hypothetical protein DACRYDRAFT_107836 [Dacryopinax sp. DJM-731
SS1]
Length = 738
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 125/196 (63%), Gaps = 7/196 (3%)
Query: 2 RQMKNAL--NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 59
RQ+ L ++G ++ ++ A+R++ +A FTKGRR+ V +C Y+A RQ +P +L
Sbjct: 102 RQILQGLKRHLGITETVIGYAERWWILAYEMGFTKGRRSLLVIGACCYIAVRQHQRPIML 161
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVC 118
ID S+ L NV++LG VYLQL Q+L + + L VDP ++ +F+ L G ++ K+
Sbjct: 162 IDLSDLLQANVFDLGNVYLQLVQLLPVKN----LDLVDPEFYIERFSKLLEFGEDREKIR 217
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
D A I+ KRDW+ TGR+PSG+CGAAL ++A + + S +IV++V I + TL KRL
Sbjct: 218 DDAVRIVHRFKRDWLYTGRRPSGICGAALLLAARMNNYRRSVLEIVQVVKIADTTLKKRL 277
Query: 179 IEFENTDSGSLTIEDF 194
+EF T S S ++++F
Sbjct: 278 VEFGKTPSASFSLDEF 293
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 26/141 (18%)
Query: 336 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 395
DG + D+D+ E+D Y+ + E K+ +W E+NR+YLE+ AA+EA A +
Sbjct: 541 DGEEEI-DLDEAELDDYILTDAEVEAKERVWVELNRQYLEKCAAREAVAQGEEEPAPKKR 599
Query: 396 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTAL---EATRRMLTKKR 452
K+ S K + ++ + + PA++A+ T R + +
Sbjct: 600 KH---------------------SNKRTGPRDSSNPRGATPAESAMALITGTYRKKGEPQ 638
Query: 453 LSSK-INYDVLEKLFDDSVCL 472
+ SK INYD LE+LF+ + L
Sbjct: 639 VRSKRINYDALEQLFNRPLKL 659
>gi|403223081|dbj|BAM41212.1| transcription factor IIIb subunit [Theileria orientalis strain
Shintoku]
Length = 520
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 118/199 (59%), Gaps = 8/199 (4%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
S++ V AKR Y +AV RNFT GR V + CLY CR++ P LLIDFS+ L V
Sbjct: 96 SEQHVEAAKRIYLLAVQRNFTMGRNNLHVASCCLYTICRREKTPHLLIDFSDILQTPVKT 155
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRD 131
+G ++++L ++L+I+ + VDPSIF +F +L L +K+ T I+ +M RD
Sbjct: 156 IGQIFMKLVRMLHIS-----VPNVDPSIFFERFATQLHLKDNIQKIIVTGNRIIQAMNRD 210
Query: 132 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 191
WI TGR+P+GLCGAAL V+A HG+ S + +V I T++KRL EF+ T + L +
Sbjct: 211 WICTGRRPTGLCGAALVVAARFHGIHLSAEAVSSVVRISHPTILKRLSEFKETSTAHLKV 270
Query: 192 EDFMARKKELHEGVAANLP 210
+F K +L NLP
Sbjct: 271 SEF--DKVDLESLPKLNLP 287
>gi|363753818|ref|XP_003647125.1| hypothetical protein Ecym_5570 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890761|gb|AET40308.1| hypothetical protein Ecym_5570 [Eremothecium cymbalariae
DBVPG#7215]
Length = 577
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 125/195 (64%), Gaps = 7/195 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + +AL I E + A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 90 LRAVSHALQIPEY--VTDAAFQWYKLALAYNFVQGRRSQNVIASCLYVACRKEKTHHMLI 147
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS+ L ++VY +GA +L+L + L+I D L DPS+F+ F ++L G K KV
Sbjct: 148 DFSSRLQVSVYSIGATFLKLVKALHITD----LPLADPSLFIQHFAEKLDLGDKKIKVVK 203
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M +DW+ GR+P+G+ GA L ++ + L+ + S+IV + H+ E TL +RL
Sbjct: 204 DAVKLAQRMSKDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEIVAVSHVAEETLQQRLN 263
Query: 180 EFENTDSGSLTIEDF 194
EF+NT+SG L+I+ F
Sbjct: 264 EFKNTNSGKLSIKQF 278
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 391
++ SD +N D+DD E++ ++ +EE K+ IW +N EYL EQ +K A A+
Sbjct: 442 SKVSDDPENLEDVDDDELNAHILDEEAFRLKERIWIGINGEYLLEQESKRLKQEADLASG 501
Query: 392 EASYKNCPEGLQA------AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATR 445
S K G Q ++L A ++ + + E T ++ +
Sbjct: 502 NTSLKKRRGGKQKRNKPPIIRDLPPGALLVADETGIQSVLQAVQEP-------TTADSVK 554
Query: 446 RMLTKKRLSSKINYDVLEKLF 466
ML K S KINYD ++ LF
Sbjct: 555 NMLQKTSFSKKINYDAIDGLF 575
>gi|417403827|gb|JAA48700.1| Putative transcription initiation factor tfiiib brf1 subunit
[Desmodus rotundus]
Length = 676
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 113/174 (64%), Gaps = 6/174 (3%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 113 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 172
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 141
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 173 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 227
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 228 LCGAALLVAARMHDFRRTIKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM 281
>gi|294914332|ref|XP_002778249.1| Transcription factor IIIB 90 kDa subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239886452|gb|EER10044.1| Transcription factor IIIB 90 kDa subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 564
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 118/177 (66%), Gaps = 3/177 (1%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
AKR + +A RNFT GR+T V A+CLY+ CR+ P+LLIDFS+ L+++V E+G +Y++
Sbjct: 88 AKRLFSLAAQRNFTAGRKTSVVAAACLYIVCRRDRTPYLLIDFSDVLHVSVREIGQMYMK 147
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRK 138
L ++L + D+ + +DPS+F+ +F+ L G + +V TA ++ M RDWI TGR+
Sbjct: 148 LVRLLSL-DKVLDIPVIDPSMFMERFSSHLGLGDKQNQVVHTAIRLIQLMSRDWICTGRR 206
Query: 139 PSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
P+GLCGAAL ++A HG++ + + + +V I TL +RL E ++T + +LT E F
Sbjct: 207 PTGLCGAALLIAARYHGVENVTANSVAGVVRIGAVTLKRRLYELKHTPTAALTTEQF 263
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 24/133 (18%)
Query: 336 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 395
D ++ SD+ D E++GYL EE K IW + N+ YL E A ++ A K A + +
Sbjct: 452 DDEESISDVSDSEIEGYLLTPEESEAKSAIWHQWNKPYLMEWAIRDEQRKAKKRAEDEAK 511
Query: 396 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK--RL 453
+N K +KR + GPA +ALEAT+ L+KK L
Sbjct: 512 RNG----------------------TYKPRKRPVPSTAMGPADSALEATQMALSKKARSL 549
Query: 454 SSKINYDVLEKLF 466
S+++N LE+LF
Sbjct: 550 SNRVNMSALEELF 562
>gi|429240773|ref|NP_596265.2| transcription factor TFIIIB complex subunit Brf1
[Schizosaccharomyces pombe 972h-]
gi|395398538|sp|Q9P6R0.2|TF3B_SCHPO RecName: Full=Transcription factor IIIB 60 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1; AltName: Full=TFIIB-related factor
gi|347834355|emb|CAB89885.2| transcription factor TFIIIB complex subunit Brf1
[Schizosaccharomyces pombe]
Length = 492
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 126/469 (26%), Positives = 220/469 (46%), Gaps = 99/469 (21%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A R++ +A+ NF KGRR++ V ASCLY+ CR +LIDFS+ L INV++LG+
Sbjct: 103 IEAAVRYFTLAINNNFIKGRRSQYVVASCLYIVCRISKTSHMLIDFSDILQINVFKLGST 162
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITT 135
+L+LC+VL L +DPS+++ +F L G +V + A ++A M RDW+
Sbjct: 163 FLKLCRVLRPN-----LPLLDPSLYISRFASLLEFGPETHRVANDAIRLVARMNRDWMQI 217
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+P+G+CGA L ++A + + S ++V +V + + T+ KRL EF+ T+SG L+I DF
Sbjct: 218 GRRPAGICGACLLIAARMNNFRRSVREVVHVVKVADITIQKRLDEFKLTESGDLSIADF- 276
Query: 196 ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGG 255
R+ + E G
Sbjct: 277 -------------------------------------------RNIWLE---------GQ 284
Query: 256 ADPPAFQVAERERMVKASAEENSSFERESDSPF---------------MSRVDKVQSPE- 299
+DPP+F ++ + A N +E SP +S+ KV+S E
Sbjct: 285 SDPPSFTKNQKFQQYGAQKVSNIDHTQEYMSPIKRTPDFDGNEVKSEELSQTVKVESQET 344
Query: 300 PESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEK 359
P + + + + +GD + + + S+ D+DD E++ L +++E
Sbjct: 345 PVHLKADEREIRKEVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLDKDEI 404
Query: 360 HYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKS 419
K +W E+N++YL E+ AK L+ ++L + +
Sbjct: 405 LTKTQVWMELNKDYLAEEEAK--------------------NLKLQEDL----KKGIVRQ 440
Query: 420 RKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 468
+++++ R ++ + G A TA E+ + M+ ++ S KINY+ L+ LFD+
Sbjct: 441 PRKRRRYRPRDSTSDGIADTAAESAKEMMQQRAFSKKINYEALDMLFDE 489
>gi|345568504|gb|EGX51397.1| hypothetical protein AOL_s00054g96 [Arthrobotrys oligospora ATCC
24927]
Length = 589
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 123/196 (62%), Gaps = 10/196 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ Q+ +AL++ D V A R++ +AV NF +GR+T+ V A CLY+ACR +LI
Sbjct: 91 LNQLASALSV--HDRFVETAARYFTLAVTHNFIQGRKTQHVVACCLYIACRLDKSAHMLI 148
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVC 118
DFS+ L +NV+ LG+ YL+L + L + + Q+DP +++ +F R L G+K +VC
Sbjct: 149 DFSDILQLNVFSLGSTYLKLVKTLNLN-----IPQLDPELWIRRFA-RHLEFGDKTQQVC 202
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A I+ M RDWI GR+P+G+CGAA+ ++A + + + +++V IV + T+ KRL
Sbjct: 203 RDAIKIVQRMDRDWIMEGRRPAGVCGAAIIIAARMNNFRRTVTEVVYIVKVAGMTINKRL 262
Query: 179 IEFENTDSGSLTIEDF 194
EF+NT S LT+ +F
Sbjct: 263 EEFKNTKSSELTVSEF 278
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 73/174 (41%), Gaps = 24/174 (13%)
Query: 296 QSP-EPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 354
+SP E E + + N TQTA + + + + + S DN D+DD E++ +
Sbjct: 435 KSPLEAEILALINNPETQTAVEDIRRERLRQQALLPPSTVSADPDNLEDVDDDEIESVMM 494
Query: 355 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 414
+ EE K IW E NREYL Q AK A A + A G+ A
Sbjct: 495 SPEEVALKTKIWYEYNREYLLTQEAKRLKAEADEKA----------GIGKKARKKRGKAK 544
Query: 415 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 468
S + PA A EA R M+ KK S KINY L+ LF+D
Sbjct: 545 PRDSSFPDM------------PASPA-EAAREMMKKKTFSRKINYAALDSLFED 585
>gi|336381997|gb|EGO23148.1| hypothetical protein SERLADRAFT_371381 [Serpula lacrymans var.
lacrymans S7.9]
Length = 593
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/184 (45%), Positives = 119/184 (64%), Gaps = 10/184 (5%)
Query: 15 EIVHVA-KRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYE 72
E+V +A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+E
Sbjct: 137 EVVSLAATRLYTLAVEHKFTKGRKSLNVAAVCLYVACRQKETRNYMLIDFSDLLQVNVFE 196
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKR 130
LG YLQL Q L + L VDPS ++ +F LL G + KV A ++ R
Sbjct: 197 LGHTYLQLVQTLNLK-----LPLVDPSHYISRFA-ALLEFGEETHKVATDAVRLVQRFDR 250
Query: 131 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 190
DW+T GR+P+G+CGAAL ++A + + S +IV++V I + TL KRL EF+ T SG+LT
Sbjct: 251 DWMTRGRRPAGICGAALLLAARMNNFRRSVEEIVQVVKIADTTLKKRLDEFKKTPSGALT 310
Query: 191 IEDF 194
+ DF
Sbjct: 311 LADF 314
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 42/131 (32%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D +D+ E+D +L +EE K+ +W E+NREYLE
Sbjct: 422 DELQGLDEEELDRFLLTDEEVRIKERVWVELNREYLE----------------------- 458
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 457
A+A RK+ K + SG TA E+ R ++ K + S +I
Sbjct: 459 ----------------AIAAKRKKTNNKPRDASTPSG--STAAESVRNLIKKNPKYSKRI 500
Query: 458 NYDVLEKLFDD 468
NYD L+ LF D
Sbjct: 501 NYDALKDLFMD 511
>gi|307344666|ref|NP_001182550.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Xenopus (Silurana) tropicalis]
Length = 665
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 123/196 (62%), Gaps = 7/196 (3%)
Query: 2 RQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
RQ+ N + + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+
Sbjct: 91 RQIHNLGVQLQLNKHCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLL 150
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGDKNHEVSM 205
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA ++ MKRDW+ TGR+PSGLCGAAL V++ H + + +++++V +CE+TL KRL
Sbjct: 206 TALRLVQRMKRDWMHTGRRPSGLCGAALLVASRMHDFRRTIKEVIRVVKVCESTLRKRLT 265
Query: 180 EFENTDSGSLTIEDFM 195
EFE+T + LTI++FM
Sbjct: 266 EFEDTPTSQLTIDEFM 281
>gi|94732974|emb|CAK11391.1| novel protein (zgc:63497) [Danio rerio]
Length = 606
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 113/175 (64%), Gaps = 8/175 (4%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ + V+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 25 FFKMVVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYILGKTFLLLAR 84
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPS 140
L I + VDP +++ +F +L G K +V TA +L MKRDW+ TGR+PS
Sbjct: 85 ELCINAPA-----VDPCLYIPRFA-HMLEFGEKTHEVSMTALRLLQRMKRDWMHTGRRPS 138
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GLCGAAL V+A H + + +++ +V +CEATL KRL EFE T + SLTI++FM
Sbjct: 139 GLCGAALLVAARMHEFRRTVKEVISVVKVCEATLRKRLTEFEETPTSSLTIDEFM 193
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 45/171 (26%)
Query: 298 PEPESIGVP---KNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 354
P S+G+ + C T+T + E + D G + ID+ E++ Y+
Sbjct: 337 PSAASLGLTDSIRQCITETTNVEEKSD--------------SGELDLDGIDEDEIEKYIL 382
Query: 355 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 414
NE E K +W + N EYL EQ KE A K + +YK P+ +E A+
Sbjct: 383 NEIEVEAKTELWMKQNEEYLREQKEKEERIAKEKE--QGTYKEKPKKPSKKREPILAS-- 438
Query: 415 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
TA EA +ML +K++SSKINYDVL L
Sbjct: 439 ------------------------TAGEAIEKMLEQKKISSKINYDVLRDL 465
>gi|410079855|ref|XP_003957508.1| hypothetical protein KAFR_0E02200 [Kazachstania africana CBS 2517]
gi|372464094|emb|CCF58373.1| hypothetical protein KAFR_0E02200 [Kazachstania africana CBS 2517]
Length = 576
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 127/195 (65%), Gaps = 7/195 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + +AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 90 LRAVSHALSIPEY--ITDAAFQWYKLALAHNFVQGRRSQNVIASCLYVACRKEKTHHMLI 147
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS+ L ++VY +GA +L++ + L+IA+ L DPSIF+ F ++L G K KV
Sbjct: 148 DFSSRLQVSVYSIGATFLKMVKKLHIAE----LPLADPSIFIQHFAEKLELGDKKIKVVK 203
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M DW+ GR+P+G+ GA + ++ + L+ + S+IV + H+ E TL KRL
Sbjct: 204 DAVKLAQRMSNDWMFEGRRPAGIAGACVLLACRMNNLRRTHSEIVAVSHVAEETLQKRLN 263
Query: 180 EFENTDSGSLTIEDF 194
EF++T++G L+IE+F
Sbjct: 264 EFKHTNAGKLSIEEF 278
>gi|170109264|ref|XP_001885839.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164639110|gb|EDR03383.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 477
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 127/197 (64%), Gaps = 10/197 (5%)
Query: 2 RQMKNALNIGESDEIVHVA-KRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLL 59
+++++ NI E+V +A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++L
Sbjct: 84 KKIQSIANILRLSEVVCLAATRMYTLAVEHKFTKGRKSLNVVAVCLYVACRQKETRNYML 143
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KV 117
IDFS+ L +NV+ELG YLQL Q L + L VDPS ++ +F LL G++ KV
Sbjct: 144 IDFSDLLQVNVFELGHTYLQLVQTLNLR-----LPLVDPSHYISRFAA-LLEFGDETHKV 197
Query: 118 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
A ++ RDW+T GR+P+G+CGAAL ++A + + S +IV++V I + TL KR
Sbjct: 198 ATDAVRLVQRFDRDWMTRGRRPAGICGAALLLAARMNNFRRSVEEIVQVVKIADTTLKKR 257
Query: 178 LIEFENTDSGSLTIEDF 194
L EF+ T SGSLT+ DF
Sbjct: 258 LDEFKATPSGSLTLADF 274
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 26/129 (20%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D +D+ E+D ++ +E+E K+ +W E+N+EYLE A K + S+ C
Sbjct: 374 DELLGLDEAELDRFILSEDEVRVKERVWVELNKEYLEALAGKSFSEC-------QSFPLC 426
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 457
+GL RK + R A G T E+ R +L K + S +I
Sbjct: 427 LQGLS---------------RRKGNNKPRDASTAAGG---TTAESVRNLLKKNPKYSKRI 468
Query: 458 NYDVLEKLF 466
NYD L+ LF
Sbjct: 469 NYDALKDLF 477
>gi|221059469|ref|XP_002260380.1| transcription factor IIIb subunit [Plasmodium knowlesi strain H]
gi|193810453|emb|CAQ41647.1| transcription factor IIIb subunit, putative [Plasmodium knowlesi
strain H]
Length = 850
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 111/183 (60%), Gaps = 6/183 (3%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
S + V A+R Y +A+ RNFT GR V ASCLY CR++ P +LIDFS+ L V
Sbjct: 99 STQHVESAQRIYLMALQRNFTMGRNNSYVAASCLYTICRREKSPVMLIDFSDILQTPVKP 158
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRD 131
LG +L+L ++L+I+ + +DPS++L +F +L L KV T ++ +M RD
Sbjct: 159 LGKTFLKLLRLLHIS-----VPNIDPSLYLERFAHKLNLKNDIYKVTYTGIKLIQAMTRD 213
Query: 132 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 191
WI TGR+P+GLCGAAL +S HG+ + I IV I T++KRL EF+NT + + +
Sbjct: 214 WICTGRRPTGLCGAALLISTRMHGIFVHSNTIANIVRISNPTIIKRLSEFKNTSTAKMKV 273
Query: 192 EDF 194
DF
Sbjct: 274 SDF 276
>gi|193599116|ref|XP_001950065.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Acyrthosiphon pisum]
Length = 491
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 144/489 (29%), Positives = 224/489 (45%), Gaps = 129/489 (26%)
Query: 4 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 63
+ N+LN+ S + + A +Y +A+ R+FT+GR+ + A+ +Y+ACR + +L+D +
Sbjct: 91 LSNSLNL--SPQTLENACVYYNMALKRHFTRGRKNALIYAASVYIACRMEGTMHMLLDVA 148
Query: 64 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC-DTAR 122
+ +N +ELG YL++ Q L + + +DPSIFL +F + L G + TA
Sbjct: 149 DASEVNAFELGKTYLRMMQTLTLT-----VPSLDPSIFLMRFVNSLDFGDKTHIVYTTAM 203
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
+L M RD I TGR+PS LCGAAL +S H + DI+K+VH ATL KRL+EF+
Sbjct: 204 RLLQRMMRDSIHTGRRPSSLCGAALLISGRMHDFNRTTDDIIKVVHCHHATLKKRLLEFK 263
Query: 183 NTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 242
+T S L+I
Sbjct: 264 DTPSSMLSI--------------------------------------------------- 272
Query: 243 EEFMTISEGLEGGADPPAFQVA---ERERMVKASAEENSSFERESDSPFMSRVDKVQSPE 299
EEFMT+ LE DPP+++VA ++ER+ K F +DS + +D+V++
Sbjct: 273 EEFMTVD--LEETHDPPSYRVARARDKERIDK--------FFEANDSEKV--IDEVKTAI 320
Query: 300 PESIGVPKNCTT--------QTASNEGEGDHTKTPGVDATTEASDGSDNFSD-------- 343
+ + KN T A + G K V + E S+N
Sbjct: 321 EKELSKKKNTTVLGVNLVEIAAAVSPEPGSSCKPVNVGPSLEIMGLSENKRSYEEDDEEE 380
Query: 344 ------IDDFEVDGYLHNEEEKHYKKIIWEEMN-REYLEEQAAKEAAAAAAKAALEASYK 396
ID+ E+D Y+ ++E K+ +W +M+ + + Q ++E A K
Sbjct: 381 SMCDVVIDEDEIDSYILSKESHQIKRNMWMKMHGTAFRKMQLSREERA-----------K 429
Query: 397 NCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSK 456
N P+ ++A KEK+ K A PA+TA EA R+L KK+LSSK
Sbjct: 430 N-PKVIRA----------------KEKKAKNALRT----PAKTAAEAVERVLKKKKLSSK 468
Query: 457 INYDVLEKL 465
INYD+L+ L
Sbjct: 469 INYDILDNL 477
>gi|336369209|gb|EGN97551.1| hypothetical protein SERLA73DRAFT_75218 [Serpula lacrymans var.
lacrymans S7.3]
Length = 785
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/184 (45%), Positives = 119/184 (64%), Gaps = 10/184 (5%)
Query: 15 EIVHVA-KRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYE 72
E+V +A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+E
Sbjct: 239 EVVSLAATRLYTLAVEHKFTKGRKSLNVAAVCLYVACRQKETRNYMLIDFSDLLQVNVFE 298
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKR 130
LG YLQL Q L + L VDPS ++ +F LL G + KV A ++ R
Sbjct: 299 LGHTYLQLVQTLNLK-----LPLVDPSHYISRFA-ALLEFGEETHKVATDAVRLVQRFDR 352
Query: 131 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 190
DW+T GR+P+G+CGAAL ++A + + S +IV++V I + TL KRL EF+ T SG+LT
Sbjct: 353 DWMTRGRRPAGICGAALLLAARMNNFRRSVEEIVQVVKIADTTLKKRLDEFKKTPSGALT 412
Query: 191 IEDF 194
+ DF
Sbjct: 413 LADF 416
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 27/131 (20%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D +D+ E+D +L +EE K+ +W E+NREYLE AAK
Sbjct: 599 DELQGLDEEELDRFLLTDEEVRIKERVWVELNREYLEAIAAK------------------ 640
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 457
G Q QE + +KSRK K+ ++ TA E+ R ++ K + S +I
Sbjct: 641 --GEQ--QETGTSN----SKSRKRKKTNNKPRDASTPSGSTAAESVRNLIKKNPKYSKRI 692
Query: 458 NYDVLEKLFDD 468
NYD L+ LF D
Sbjct: 693 NYDALKDLFMD 703
>gi|115530760|emb|CAL49303.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Xenopus (Silurana) tropicalis]
Length = 461
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 123/196 (62%), Gaps = 7/196 (3%)
Query: 2 RQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
RQ+ N + + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+
Sbjct: 91 RQIHNLGVQLQLNKHCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLL 150
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGDKNHEVSM 205
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA ++ MKRDW+ TGR+PSGLCGAAL V++ H + + +++++V +CE+TL KRL
Sbjct: 206 TALRLVQRMKRDWMHTGRRPSGLCGAALLVASRMHDFRRTIKEVIRVVKVCESTLRKRLT 265
Query: 180 EFENTDSGSLTIEDFM 195
EFE+T + LTI++FM
Sbjct: 266 EFEDTPTSQLTIDEFM 281
>gi|324502344|gb|ADY41032.1| Transcription factor IIIB 90 kDa subunit [Ascaris suum]
Length = 1028
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 143/478 (29%), Positives = 225/478 (47%), Gaps = 80/478 (16%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A F+ + V RNFT+GR V A+CLY+ CR ++ LL+DFS+ +NV+ELG
Sbjct: 104 IDTAHNFFRMCVCRNFTRGRMRSHVVAACLYMTCRLENTAHLLLDFSDVTQVNVFELGRT 163
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 135
L + L I L DP +++ +F L G K+V A ++ MKRDWI T
Sbjct: 164 LNFLARSLKIN-----LPTTDPCLYILRFAVLLEFGEKEKEVVSLATRLVQRMKRDWIAT 218
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+P+GLCGAAL ++A + + DIV++VHI EA + KRL EF T S SLTI++F
Sbjct: 219 GRRPTGLCGAALLLAARCYNFNRTIGDIVRVVHISEAVVRKRLDEFGKTPSSSLTIDEFA 278
Query: 196 ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGL------------------ 237
E E + P NE L K K+ K L
Sbjct: 279 IVDLENCE----DPPAFRESRRRANEEL-KRKEEQKAKEIELEVKPLEEEVEKALERKRR 333
Query: 238 ---CRSCYEEFMTISEGLEGGADPPAFQVAE---RERMVKASAEENSSFERESDSPFMSR 291
R+ Y + +T S E P ++A+ R +V+ + + +R P M
Sbjct: 334 EKFKRTLYAKMLTDSLVKES----PELRLADAMIRNEIVEVAFDAGEERQR----PLMGM 385
Query: 292 VDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSD--NFSDIDDFEV 349
+ +P ES+G+ Q A++E G + +G+D +F +IDD E+
Sbjct: 386 SSRY-APTLESLGISDPLKPQPATSEHTGRSEE-----------NGNDELDFKEIDDDEI 433
Query: 350 DGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELA 409
D Y+ + EE K +W ++N+E+L E +E A + + +
Sbjct: 434 DTYILSREEAETKSRLWMKLNKEHLVEMELREQEGAERERGDDGIVR------------- 480
Query: 410 AAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 467
+K K+ A+ K S A TA EA +++ +K+LS+KI+Y++L+++ D
Sbjct: 481 ----------KKRKKSTNIAKRKESIVASTAQEAITKVIQEKKLSNKIDYEILKEVMD 528
>gi|156100339|ref|XP_001615897.1| transcription factor IIIb subunit [Plasmodium vivax Sal-1]
gi|148804771|gb|EDL46170.1| transcription factor IIIb subunit, putative [Plasmodium vivax]
Length = 826
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 110/183 (60%), Gaps = 6/183 (3%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
S + V A+R Y +A+ RNFT GR V ASCLY CR++ P +LIDFS+ L V
Sbjct: 99 STQHVEAAQRIYLMALQRNFTMGRNNSYVAASCLYTICRREKSPVMLIDFSDILQTPVKP 158
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRD 131
LG +L+L ++L+I+ + +DPS++L +F +L L KV T ++ +M RD
Sbjct: 159 LGKTFLKLLRLLHIS-----VPNIDPSLYLERFAHKLNLKNAIYKVTYTGIKLIQAMTRD 213
Query: 132 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 191
WI TGR+P+GLCGAAL +S HG+ + I IV I T++KRL EF+NT + +
Sbjct: 214 WICTGRRPTGLCGAALLISTRMHGIFIHSNTIANIVRISNPTIIKRLSEFKNTSTAKMKA 273
Query: 192 EDF 194
DF
Sbjct: 274 ADF 276
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 29/146 (19%)
Query: 327 GVDATTEAS--DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 384
GVD ++AS +++ SD D E++ + +E+E+ K +IW++M + Y + +
Sbjct: 702 GVDIPSDASLEQLNESLSDFYDSEIENIILSEKERKRKMLIWDDMMKSYFPQYYKQLKKQ 761
Query: 385 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPA--QTALE 442
+++ P+ + A EK +K+ + + P QT +
Sbjct: 762 KKKRSSYH------PDRVGA-----------------EKSRKKKKKENDDHPLDEQTTGD 798
Query: 443 ATRRMLTK--KRLSSKINYDVLEKLF 466
+ L K K +S+K+NYDVL+ LF
Sbjct: 799 SVIMALEKSDKSMSTKMNYDVLKSLF 824
>gi|393214015|gb|EJC99509.1| hypothetical protein FOMMEDRAFT_160578 [Fomitiporia mediterranea
MF3/22]
Length = 724
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 125/197 (63%), Gaps = 10/197 (5%)
Query: 2 RQMKNALNIGESDEIVHVAK-RFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLL 59
R+++N + E+V A R Y +A+ FTKGR+ V A CLY+ACRQK ++ ++L
Sbjct: 117 RKIRNVGALMRLSEVVQTAAIRMYTLALEHKFTKGRKNMNVIAVCLYIACRQKETRNYML 176
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KV 117
IDFS+ L +NV++LG +LQL Q L + L VDPS ++ +F LL G++ KV
Sbjct: 177 IDFSDLLQVNVFDLGHTFLQLVQTLNLR-----LPLVDPSHYIARFA-ALLEFGDETPKV 230
Query: 118 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
A ++A RDW++ GR+P+G+CGA L ++A + + S ++V++V I + TL KR
Sbjct: 231 AADAVRLVARFDRDWMSRGRRPAGICGACLLLAARMNNFRRSVQEVVQVVKIADTTLKKR 290
Query: 178 LIEFENTDSGSLTIEDF 194
L EF+NT SG+LT+ DF
Sbjct: 291 LDEFKNTPSGALTLADF 307
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 30/117 (25%)
Query: 352 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 411
+L +EEE K+ +W EMN++YLE AAKEA E +
Sbjct: 511 FLLSEEEVKIKERVWVEMNKDYLEALAAKEA------------------------EKVGS 546
Query: 412 AAAAVAKSRKEKQQKRAAEAKNSGPAQ-TALEATRRMLTKK-RLSSKINYDVLEKLF 466
A K RK + R +S PA TA++A R M+ K + S +INY+ LE LF
Sbjct: 547 APTKTRKKRKTDNKPR----DSSTPAGLTAVDAVRSMIKKSAKYSRRINYEALENLF 599
>gi|41054045|ref|NP_956183.1| transcription factor IIIB 90 kDa subunit [Danio rerio]
gi|38014698|gb|AAH60523.1| Zgc:63497 [Danio rerio]
Length = 693
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 112/175 (64%), Gaps = 8/175 (4%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ + V+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 112 FFKMVVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYILGKTFLLLAR 171
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPS 140
L I + VDP +++ +F +L G K +V TA +L MKRDW+ TGR+PS
Sbjct: 172 ELCINAPA-----VDPCLYIPRFA-HMLEFGEKTHEVSMTALRLLQRMKRDWMHTGRRPS 225
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GLCGAAL V+A H + + +++ +V +CE TL KRL EFE T + SLTI++FM
Sbjct: 226 GLCGAALLVAARMHEFRRTVKEVISVVKVCETTLRKRLTEFEETPTSSLTIDEFM 280
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 45/171 (26%)
Query: 298 PEPESIGVP---KNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 354
P S+G+ + C T+T + E + D G + ID+ E++ Y+
Sbjct: 424 PSAASLGLTDSIRQCITETTNVEEKSD--------------SGELDLDGIDEEEIEKYIL 469
Query: 355 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 414
NE E K +W + N EYL EQ KE A K + +YK P+ +E A+
Sbjct: 470 NEIEVEAKTELWMKQNEEYLREQKEKEERIAKEKE--QGTYKEKPKKPSKKREPILAS-- 525
Query: 415 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
TA EA +ML +K++SSKINYDVL L
Sbjct: 526 ------------------------TAGEAIEKMLEQKKISSKINYDVLRDL 552
>gi|449502947|ref|XP_002200378.2| PREDICTED: transcription factor IIIB 90 kDa subunit [Taeniopygia
guttata]
Length = 565
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 112/171 (65%), Gaps = 6/171 (3%)
Query: 26 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 85
+AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSKHLTRGRKRTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLVLARELC 60
Query: 86 IADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCG 144
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHMLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 145 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
AAL V+A H + + +++++V +CE+TL KRL EF++T + LTI++FM
Sbjct: 116 AALLVAARMHDFRRTVKEVIRVVKVCESTLRKRLTEFQDTPTSQLTIDEFM 166
>gi|410898858|ref|XP_003962914.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Takifugu
rubripes]
Length = 591
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 110/174 (63%), Gaps = 6/174 (3%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
FY +A+A++ T+G R V A+C+Y+ CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 86 FYKMALAKHLTRGHRCAHVAAACIYMVCRTEGTPHMLLDLSDVLQVNVYVLGRTFLTLSR 145
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 141
L I + +DP +++ +F L G N +V TA ++ MKRDW+ TGR+PSG
Sbjct: 146 ELCINAPA-----IDPCLYIPRFAQLLEFGEKNHEVSMTAMRLVQRMKRDWMHTGRRPSG 200
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
LCGAAL V+A H + + +IV +V +CE TL KRL EF +T + LTIE+FM
Sbjct: 201 LCGAALLVAARMHDFRRTTKEIVSVVKVCEQTLKKRLTEFGDTPTSQLTIEEFM 254
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 424 QQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
QQ+ +A + A +A EA +ML +KR+SSKINYDVL+ L
Sbjct: 425 QQRGSARKRAPIRANSADEAIGKMLEQKRISSKINYDVLKDL 466
>gi|365983082|ref|XP_003668374.1| hypothetical protein NDAI_0B00970 [Naumovozyma dairenensis CBS 421]
gi|343767141|emb|CCD23131.1| hypothetical protein NDAI_0B00970 [Naumovozyma dairenensis CBS 421]
Length = 636
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 128/202 (63%), Gaps = 7/202 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + +AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 90 LRAVSHALSIPEY--ITDAAFQWYKLALAYNFVQGRRSQNVIASCLYVACRKEKTHHMLI 147
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS+ L ++VY +GA +L++ + L+I+ L DPS+F+ F ++L G K KV
Sbjct: 148 DFSSRLQVSVYSIGATFLKMVKRLHISK----LPLADPSLFIQHFAEKLDLGDKKIKVVK 203
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M DW+ GR+P+G+ GA + ++ + L+ + S+IV + H+ E TL +RL
Sbjct: 204 DAVKLAQRMSHDWMFEGRRPAGIAGACVLLACRMNNLRRTHSEIVAVSHVAEETLQQRLN 263
Query: 180 EFENTDSGSLTIEDFMARKKEL 201
EF+NT+SG L+I +F +EL
Sbjct: 264 EFKNTNSGKLSIHEFRKASEEL 285
>gi|296424786|ref|XP_002841927.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638179|emb|CAZ86118.1| unnamed protein product [Tuber melanosporum]
Length = 553
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 133/213 (62%), Gaps = 10/213 (4%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A+R++ ++V NF +GR+T+ V A CLY+ CR + +LIDFS+ LN+NV+ LG YLQ
Sbjct: 109 AQRWFTLSVTHNFNRGRKTQFVIACCLYIVCRLEKSSHMLIDFSDILNVNVFSLGHTYLQ 168
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRK 138
L Q+L + L +DP++++++F L G + KV + A I+ M RDW+ GR+
Sbjct: 169 LVQILEVR-----LPHIDPTVYVYRFAKHLDFGSEQTKVANDALRIIQRMSRDWMVQGRR 223
Query: 139 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 198
PSG+CGAAL ++A + + S ++V +V + + T+ KRL EF++T SG LT+E+F R
Sbjct: 224 PSGICGAALILAARMNNFRRSVREVVYVVKVADLTIQKRLDEFKDTKSGDLTVEEF--RN 281
Query: 199 KELHEGVAANLPNNGPKVSGMNEVLCKHKDTGK 231
L + A + P+ GPK S ++ + D G+
Sbjct: 282 IWLEQ--AHDPPSYGPKASKKHKRVRDVNDDGE 312
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 28/122 (22%)
Query: 347 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 406
FEV L EEE++ K+ IW E N++YL ++ K E +N
Sbjct: 459 FEVQNALLTEEERNLKEKIWVEFNKDYLLKRLKK-----------ETDLRN--------- 498
Query: 407 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 466
+ K+ +++++ + ++ + A T ++ + ML ++ S KINY +E LF
Sbjct: 499 --------GIIKTARKRKRNKPRDSNSEDMAATPADSAKNMLMRRSYSKKINYKAIEGLF 550
Query: 467 DD 468
+D
Sbjct: 551 ED 552
>gi|392559045|gb|EIW52230.1| hypothetical protein TRAVEDRAFT_24512 [Trametes versicolor
FP-101664 SS1]
Length = 703
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 124/197 (62%), Gaps = 11/197 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLL 59
++Q+ AL + E + A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++L
Sbjct: 89 IQQVATALRLSEV--VSLAATRLYTLAVEHKFTKGRKSMNVVAVCLYVACRQKETRNYML 146
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KV 117
IDFS+ L +NV+ELG YLQL Q L + L VDPS ++ +F LL G++ +V
Sbjct: 147 IDFSDLLQVNVFELGHTYLQLVQTLNLR-----LPLVDPSHYISRFA-ALLEFGDETHQV 200
Query: 118 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
A ++ RDW+T GR+P+G+CGA L ++A + + S ++IV++V I + TL KR
Sbjct: 201 AMDAVRLVQRFDRDWMTKGRRPAGICGACLLLAARMNNFRRSVAEIVQVVKIADTTLKKR 260
Query: 178 LIEFENTDSGSLTIEDF 194
L EF T SG+LT+ DF
Sbjct: 261 LDEFRRTPSGALTLADF 277
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 27/119 (22%)
Query: 352 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 411
+L ++E K+ +W EMNR+YLE A AAKA L+ S + Q+
Sbjct: 510 FLLTDDEVRIKERVWVEMNRDYLE--------ALAAKAELQES--------EDKQKKTRK 553
Query: 412 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKINYDVLEKLFDDS 469
K R ++ TA E+ R ++ K + S +INY+ L+ LF D+
Sbjct: 554 RRKTNNKPRD----------ASTPHGSTAAESVRNLIKKNPKYSKRINYNALKDLFTDA 602
>gi|392572943|gb|EIW66086.1| hypothetical protein TREMEDRAFT_35498, partial [Tremella
mesenterica DSM 1558]
Length = 731
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 122/208 (58%), Gaps = 10/208 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++ + +A+NI I+ A+R+YG+AV F +GRR E + ASCLYL CR K P +LI
Sbjct: 83 VKSVGDAMNI--EPHIIRGAQRWYGLAVDNRFNRGRRIEYIVASCLYLQCRMKKDPHMLI 140
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
DFS L INVYELG YL+L +L + + + +VDP+I+ +F +RL G V
Sbjct: 141 DFSERLTINVYELGGTYLKLRSILSL---TETMPEVDPAIYNLRFANRLSFGAPAVVHAI 197
Query: 121 ARDILASMKR---DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
A D ++R DW+T GR+P+GLCGA L ++A H + ++ ++V + T+ +R
Sbjct: 198 AADASKLIRRFAADWMTQGRRPAGLCGACLIIAARMHDFLRTPDEVAQVVKVAPITIHRR 257
Query: 178 LIEFENTDSGSLTIEDF--MARKKELHE 203
L EF T T+E++ M + LH+
Sbjct: 258 LREFAQTSIAKKTVEEWRNMTEEDLLHD 285
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 339 DNFSDIDDFEVDGY-LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 397
D F DIDD E+D Y + ++ E+ + +W N ++LEE+ ++ K ALE K
Sbjct: 555 DVFEDIDDEELDKYWIMDDHERDTRARMWLSSNGKWLEEEKTRQE-----KKALEEKRKG 609
Query: 398 CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKI 457
R + + KR P TA EA + K+ SS++
Sbjct: 610 -------------------ESGRPKPKTKRKRPTARQKPFTTAREAITTLAIDKKFSSRV 650
Query: 458 NYDVLE 463
NYD LE
Sbjct: 651 NYDALE 656
>gi|410963029|ref|XP_003988069.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Felis catus]
Length = 563
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 111/171 (64%), Gaps = 6/171 (3%)
Query: 26 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 85
+AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 86 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 144
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 145 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
AAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 116 AALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM 166
>gi|395328548|gb|EJF60939.1| hypothetical protein DICSQDRAFT_170484 [Dichomitus squalens
LYAD-421 SS1]
Length = 724
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 121/196 (61%), Gaps = 9/196 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLL 59
++Q+ AL + E + A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++L
Sbjct: 97 IQQVATALRLSEV--VSLAATRLYTLAVEHKFTKGRKSMNVVAVCLYVACRQKETRNYML 154
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVC 118
IDFS+ L +NV+ELG YLQL Q L + L VDPS ++ +F L G +V
Sbjct: 155 IDFSDLLQVNVFELGHTYLQLVQTLNLR-----LPLVDPSHYISRFAALLEFGEETHQVA 209
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A ++ RDW+T GR+P+G+CGA L ++A + + S ++IV++V I + TL KRL
Sbjct: 210 MDAIRLVQRFDRDWMTKGRRPAGICGACLLLAARMNNFRRSVAEIVQVVKIADTTLKKRL 269
Query: 179 IEFENTDSGSLTIEDF 194
EF T SG+LT+ DF
Sbjct: 270 EEFRKTPSGALTLADF 285
Score = 38.9 bits (89), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 27/118 (22%)
Query: 352 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 411
++ EEE K+ IW EMN++YLE AAK A Q+
Sbjct: 526 FILTEEEVRIKERIWVEMNKDYLEAIAAK-----------------------AEQQEGQE 562
Query: 412 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKINYDVLEKLFDD 468
K RK + R A + TA E+ R ++ K + S +INY+ L++LF D
Sbjct: 563 KEKKSRKRRKTNNKPRDASTPH---GSTAAESVRNLIKKNPKYSKRINYNALKELFTD 617
>gi|390600638|gb|EIN10033.1| cyclin-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 584
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 9/186 (4%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYL--NIN 69
S+ I H A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++LIDFS+ L ++N
Sbjct: 102 SESICHAATRLYTLAVEHKFTKGRKSMNVVAVCLYVACRQKETRNYMLIDFSDLLQASVN 161
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASM 128
V+ELG YLQL Q L + L VDPS ++ +F L G +V A ++
Sbjct: 162 VFELGHTYLQLVQTLNLR-----LPLVDPSHYISRFAALLEFGEETHQVATDAVRLVQRF 216
Query: 129 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGS 188
RDW+T GR+P+G+CGAAL ++A + + S +IV++V I + TL KR+ EF T SG
Sbjct: 217 DRDWMTRGRRPAGICGAALLLAARMNNFRRSIEEIVQVVKIADVTLRKRMEEFRKTPSGE 276
Query: 189 LTIEDF 194
LT+ DF
Sbjct: 277 LTLADF 282
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 39/131 (29%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D +D+ E+D ++ EEE ++ +W E+N++YLE
Sbjct: 395 DELQGLDEEELDQFIMTEEEVKIRERVWVELNKDYLE----------------------- 431
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 457
A A + RK + R A + TA E+ R ++ K + S +I
Sbjct: 432 ------------AIAGTYSIRRKANNKPRDASTPH---GSTAAESARNLVKKNPKFSKRI 476
Query: 458 NYDVLEKLFDD 468
NYD L+ LF D
Sbjct: 477 NYDALKDLFID 487
>gi|366994093|ref|XP_003676811.1| hypothetical protein NCAS_0E03840 [Naumovozyma castellii CBS 4309]
gi|342302678|emb|CCC70454.1| hypothetical protein NCAS_0E03840 [Naumovozyma castellii CBS 4309]
Length = 657
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 124/195 (63%), Gaps = 7/195 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + +ALNI E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 157 LRAVSHALNIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 214
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS+ L ++VY +GA +L++ + L+I + L DPSIF+ F ++L G K KV
Sbjct: 215 DFSSRLQVSVYSIGATFLKMVKRLHITE----LPLADPSIFIQHFAEKLELGDKKIKVVK 270
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M DW+ GR+P+G+ GA + ++ + L+ + S+IV + H+ E TL +RL
Sbjct: 271 DAVKLAQRMSHDWMFEGRRPAGIAGACILLACRMNNLRRTHSEIVAVSHVAEDTLQQRLN 330
Query: 180 EFENTDSGSLTIEDF 194
EF+NT +G L+I +F
Sbjct: 331 EFKNTKAGKLSIHEF 345
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 336 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAAKAAL 391
D +N D+DD E++ L +EE K+ IW +N EYL EQ +K EA A
Sbjct: 520 DDPENLEDVDDEELEAQLLDEEASKLKERIWLGINGEYLLEQESKRLKEEADMVTGNTAN 579
Query: 392 EASYKNCPEGLQAAQ-ELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALEATRRML 448
+ + + E+ + A V ++ +AA A+ +G TA ++ + ML
Sbjct: 580 KKRRGGGGGRRKKPKTEITTSNATGVLAQLTDRTGLQAALKAAEENGDFTTA-DSVKNML 638
Query: 449 TKKRLSSKINYDVLEKLF 466
K S KINYD ++ LF
Sbjct: 639 QKATFSKKINYDAIDGLF 656
>gi|82793708|ref|XP_728148.1| transcription factor IIIb 70 kDa subunit [Plasmodium yoelii yoelii
17XNL]
gi|23484353|gb|EAA19713.1| transcription factor iiib 70 kDa subunit [Plasmodium yoelii yoelii]
Length = 756
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 117/189 (61%), Gaps = 6/189 (3%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A N+ S++ + A+R Y +A+ RNFT GR V ASCLY CR++ P +LIDFS+ L
Sbjct: 89 ADNLHLSNQHIEAAQRIYLMALQRNFTMGRNNSYVAASCLYTICRREKSPIMLIDFSDIL 148
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDIL 125
V LG +L+L ++L+I+ + +DPS+FL +F +L L KV T ++
Sbjct: 149 QTPVKPLGKTFLKLLRLLHIS-----VPNIDPSLFLERFAYKLNLKNDIYKVTYTGIKLI 203
Query: 126 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 185
+M RDWI+TGR+P+GLCGA+L ++ HG+ + + I ++V I T++KRL EF+NT+
Sbjct: 204 QAMTRDWISTGRRPTGLCGASLLIATRIHGINVNSNTIAEVVRISNPTIIKRLYEFKNTN 263
Query: 186 SGSLTIEDF 194
+ +F
Sbjct: 264 IAKIKASEF 272
>gi|410963031|ref|XP_003988070.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Felis catus]
Length = 587
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 111/171 (64%), Gaps = 6/171 (3%)
Query: 26 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 85
+AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 86 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 144
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 145 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
AAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 116 AALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM 166
>gi|70953761|ref|XP_745961.1| transcription factor IIIb subunit [Plasmodium chabaudi chabaudi]
gi|56526443|emb|CAH75344.1| transcription factor IIIb subunit, putative [Plasmodium chabaudi
chabaudi]
Length = 717
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 116/189 (61%), Gaps = 6/189 (3%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A N+ S + + A+R Y +A+ RNFT GR V ASCLY CR++ P +LIDFS+ L
Sbjct: 88 ADNLHLSSQHIEAAQRIYLMALQRNFTMGRNNSYVAASCLYTICRREKSPIMLIDFSDIL 147
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDIL 125
V LG +L+L ++L+I+ + +DPS+FL +F +L L KV T ++
Sbjct: 148 QTPVKPLGKTFLKLLRLLHIS-----VPNIDPSLFLERFAYKLNLKNDIYKVTYTGIKLI 202
Query: 126 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 185
+M RDWI+TGR+P+GLCGA+L ++ HG+ + + I ++V I T++KRL EF+NT+
Sbjct: 203 QAMTRDWISTGRRPTGLCGASLLIATRIHGITINSNTIAEVVRISNPTIIKRLYEFKNTN 262
Query: 186 SGSLTIEDF 194
+ +F
Sbjct: 263 IAKIKASEF 271
>gi|156083907|ref|XP_001609437.1| transcription factor TFIIB subunit [Babesia bovis T2Bo]
gi|154796688|gb|EDO05869.1| transcription factor TFIIB subunit, putative [Babesia bovis]
Length = 519
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 112/186 (60%), Gaps = 6/186 (3%)
Query: 5 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 64
+ A ++ S E+V A R Y +AV RNFT GR + V CLY ACR+ P+LLIDF++
Sbjct: 92 RTACHLNISSELVTKATRIYSLAVQRNFTMGRNNKHVACCCLYTACRRFKAPYLLIDFAD 151
Query: 65 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARD 123
L + V +G V+++L ++L++ + VDPSIF +F + L L ++ T
Sbjct: 152 VLQVPVKIIGQVFMKLVRMLHLE-----VPNVDPSIFFERFANELQLKDKVDQIITTGVR 206
Query: 124 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 183
++ +M+RDW+ TGR+P+GLCGAAL V+A HG+ + + +V I T+MKRL EF
Sbjct: 207 LIQAMRRDWLCTGRRPTGLCGAALVVAARIHGVPLNAEAVASVVRISHPTIMKRLSEFRG 266
Query: 184 TDSGSL 189
T + L
Sbjct: 267 TSTARL 272
>gi|389742730|gb|EIM83916.1| cyclin-like protein [Stereum hirsutum FP-91666 SS1]
Length = 687
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 118/191 (61%), Gaps = 9/191 (4%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNY 65
A N+ S+ + A R Y +AV FTKGR+ V A CLY+ACRQK ++ +LIDFS+
Sbjct: 93 ASNLHLSETVSMSASRLYSLAVEHKFTKGRKAMNVVAVCLYVACRQKGTRSLMLIDFSDL 152
Query: 66 LNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARD 123
L +NV+ELG YLQL Q L + L VDPS ++ +F LL G++ +V A
Sbjct: 153 LQVNVFELGHTYLQLVQTLNLR-----LPLVDPSHYISRFA-ALLEFGDETSRVATDAVR 206
Query: 124 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 183
++ RDW+T GR+P+G+CGA L ++A + + S +IV++V I + TL KRL EF+
Sbjct: 207 LVQRFDRDWMTKGRRPAGICGACLLLAARMNNFRRSIEEIVQVVKIADTTLKKRLDEFKR 266
Query: 184 TDSGSLTIEDF 194
T S +LTI DF
Sbjct: 267 TRSANLTIGDF 277
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 27/128 (21%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D +D+ E+D +L +EE K+ +W EMN+EYLE A K
Sbjct: 521 DELLGLDEDELDKFLLTDEEVKIKERVWVEMNKEYLEAIALK------------------ 562
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 458
A++ + + K RK + R A + TA E+ R +L + + S +IN
Sbjct: 563 ------AEQRDNGSTSKPRKKRKTNSKPRDASTPH---GNTAAESVRSLLKQPKYSKRIN 613
Query: 459 YDVLEKLF 466
Y+ L+ LF
Sbjct: 614 YNALKDLF 621
>gi|50553846|ref|XP_504334.1| YALI0E24035p [Yarrowia lipolytica]
gi|49650203|emb|CAG79933.1| YALI0E24035p [Yarrowia lipolytica CLIB122]
Length = 512
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 131/471 (27%), Positives = 226/471 (47%), Gaps = 57/471 (12%)
Query: 4 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 63
+ +A++I + I+ A R++ +AV +NF KGRR++ V ++CLY+ACR++ + +LIDF+
Sbjct: 84 LAHAMDIPQ--HIIEKAHRYFVLAVTKNFVKGRRSQYVVSACLYVACRRELRHEMLIDFA 141
Query: 64 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 123
+ L NV+ +G YLQL + L I + L +DPSI++ +F +L K V + A
Sbjct: 142 DKLFCNVFAIGTTYLQLLKTLDIKN----LPLIDPSIYIQRFASKLDFDNAKNVRNDAVR 197
Query: 124 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 183
++ M RD++ GR+P+G+ AAL ++A + + SK+ I + E TL +RL EF +
Sbjct: 198 LVQRMGRDYLVEGRRPAGIAAAALLLAARMNNQRRSKTQIAFYAKVAEETLQRRLDEFRH 257
Query: 184 TDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYE 243
T++G TI F E + + + G+ E + D
Sbjct: 258 TEAGRQTISVFRMTNIESQSDPPSYQKHRKREQEGIEEKVQDEIDAE-------MEEMMA 310
Query: 244 EFMTISEGLEGGADPPAF----QVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPE 299
+ + +E E A F + ER V+ A+ +ERE + +
Sbjct: 311 QMVEKNENPEERAKEALFLEDTPQEKAERTVQNRAQYIIEYERERRRMLNEEANNAATEA 370
Query: 300 PESIGVPKNCTT---QTASNEGEGDHTKTPGVDATTEASDGSDNFSDI-DDFEVDGYLHN 355
++ P QTA EG GD + P V++ SD+ DD E+D L N
Sbjct: 371 LLAMKTPHEQMMEDQQTAEKEG-GD-ARPPVVES----------LSDLDDDPEIDSILLN 418
Query: 356 EEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAA 415
+EE++ K+ +W +N EYL+EQ K ++ A AA
Sbjct: 419 DEERNIKEAVWTTVNMEYLQEQETK------------------------LLKIEADKAAG 454
Query: 416 VAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 466
V K K++++++ + + P + A E+T++M+ ++ S KINY+ L+
Sbjct: 455 VYKEPKKRKRQKQKDGEKPAPPKDAAESTKQMVQQRAPSKKINYEKFSGLW 505
>gi|328770639|gb|EGF80680.1| hypothetical protein BATDEDRAFT_24490 [Batrachochytrium
dendrobatidis JAM81]
Length = 491
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 137/481 (28%), Positives = 224/481 (46%), Gaps = 105/481 (21%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++++ N I ++ +V A+RF+ +AV NFTKGR++ V A+CLY+ CR + +LI
Sbjct: 93 IQEVANQPQIRMNERLVGHARRFFNVAVVNNFTKGRKSGNVVAACLYIVCRLEKTAHMLI 152
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCD 119
DF++ L+ NVY++GA +L LC++ + + + VDPS+++ +F +L G + + +
Sbjct: 153 DFADALSTNVYQVGATFLALCKISGV----DKMPLVDPSLYISRFAAKLDFGEDTQNIVK 208
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A ++ M RDW+ TGR+P+G+C A+L+V++ H + +I+ +V ICEATL +RL
Sbjct: 209 DANRLVQRMCRDWMQTGRRPAGICAASLFVASRMHNHNRTIREIILVVKICEATLRRRLR 268
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCR 239
EF T S +L+++D
Sbjct: 269 EFRETPSSNLSVQD---------------------------------------------- 282
Query: 240 SCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPE 299
F TI LEG DPP+F + + AS FE +S+ +++++ S
Sbjct: 283 -----FQTI--WLEGERDPPSFAPPKTRKHEPAS----QLFE-DSNGDSKAKIEQAFSSL 330
Query: 300 PESIGVPKNCTTQTASNEGE---------GDHTKTPGVDATTEASDGSDNFSDIDDFEVD 350
ES+ + NE + + KT DAT + + DD E+
Sbjct: 331 KESVLAGDDDEDLEDLNEQQLLSFEQSLIQVYNKTEA-DATHQIHYSDNLSDLDDDQEIQ 389
Query: 351 GYLH-NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELA 409
+ EE +K+ IW E N+E++ Q AK
Sbjct: 390 AMIDVTPEEVEFKEAIWTEENKEWILRQQAK----------------------------- 420
Query: 410 AAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM-LTKKRLSSKINYDVLEKLFDD 468
AA +A+S K K +KR + S A TA EA + + ++K LS KINY VLE LF+
Sbjct: 421 AALGIGLAESEKRKPKKRPRVIR-SYEAPTAAEAAKNLVMSKPTLSKKINYGVLETLFEK 479
Query: 469 S 469
+
Sbjct: 480 T 480
>gi|320580982|gb|EFW95204.1| TFIIIB B-related factor [Ogataea parapolymorpha DL-1]
Length = 534
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 125/202 (61%), Gaps = 15/202 (7%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + AL I D I A +++ +A+ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 89 IRNVAAALKI--KDYIADAACQWFQLALTNNFVQGRRSQNVVAACLYIACRKEKTHHMLI 146
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD-----RLLPGGNK 115
DFS+ L I+VY +GA +L++ + L+I L VDPS+F+ F + R+LP
Sbjct: 147 DFSSRLQISVYAVGATFLKMVKALHITS----LPLVDPSLFIQNFAEKLDFGRMLP---- 198
Query: 116 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 175
KV + A + M DWI GR+P+G+ GA + ++A + + + S+IV + HI E+T+
Sbjct: 199 KVINDAIKLAHRMSEDWIHEGRRPAGIAGACILLAARMNNFRRTHSEIVAVTHIGESTIQ 258
Query: 176 KRLIEFENTDSGSLTIEDFMAR 197
KRL EF+NT++ LT+E+F R
Sbjct: 259 KRLNEFKNTNASGLTVEEFRER 280
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 23/145 (15%)
Query: 336 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA----- 390
D +N D DD E++ L EEE K+ +W N+E+L Q K A + A
Sbjct: 402 DDPENLDDADDDEINNILLTEEESKLKERLWVGSNQEFLLAQETKRLKEDADRIAGHNQH 461
Query: 391 ---LEASYKNCPEGLQAAQELA---AAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 444
+ + K +G E + A++ + + Q+ AA++ S
Sbjct: 462 PKRRKRTTKTEDKGNDLKSEYGEYLSGASSHLGLTAALNQELSAADSAKS---------- 511
Query: 445 RRMLTKKRLSSKINYDVLEKLFDDS 469
ML K LS KINY+ + +LFDD+
Sbjct: 512 --MLKNKSLSKKINYEAVNELFDDN 534
>gi|313237620|emb|CBY12764.1| unnamed protein product [Oikopleura dioica]
Length = 569
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 111/181 (61%), Gaps = 11/181 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACR--QKSKPFLLIDFSNYLNINVYELGAVY 77
A +Y +A+ ++FT+GRR EQV ASC+YL+CR + +L+DFS L +NVY LG +
Sbjct: 102 AYNYYRLALNKSFTRGRRAEQVYASCVYLSCRLNPRQNELMLLDFSQVLKVNVYILGKTF 161
Query: 78 LQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG----NKKVCDTARDILASMKRDWI 133
L+L Q L I +DP ++H+F +L G NK+V +T+ I+ M RDW+
Sbjct: 162 LKLSQELNITPH-----MLDPVFYIHRFAHQLGFGDSGTKNKEVMETSNRIVQRMNRDWM 216
Query: 134 TTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIED 193
T GR+P+G+CGAA ++A HG + + DI K+ I T+ KRL EF T S LTI++
Sbjct: 217 TEGRRPAGICGAAFVIAARMHGFRCNIEDITKVFKIGPNTIRKRLHEFGATPSAKLTIDE 276
Query: 194 F 194
F
Sbjct: 277 F 277
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 40/203 (19%)
Query: 271 KASAEENSSFERESDSPFMSRVD--KVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGV 328
+A A N +F SD+P SR + +++S P P + + E P +
Sbjct: 372 EALARLNPNFVGSSDTPSTSRPENGRLESLLPNESYQPTVESLGITRSHAEMLSLSDPSM 431
Query: 329 D---ATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEM--NREYLEEQAAKEAA 383
+ + E DG + IDD E+ + NE E K +WE N+E+++ Q K
Sbjct: 432 ENNVSKEELHDGELDLEGIDDDEISCMILNEAEVSRKTTMWENRKENKEWVKRQEEKRLE 491
Query: 384 AAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPA-QTALE 442
A+ N P+ +A R K++ P TA E
Sbjct: 492 EAS----------NPPKAKRA----------------------RKRRGKSTLPEYSTAGE 519
Query: 443 ATRRMLTKKRLSSKINYDVLEKL 465
A + ++ +KR S+ INYDVL L
Sbjct: 520 ALQTVIKQKRFSTNINYDVLNTL 542
>gi|124809652|ref|XP_001348643.1| transcription factor IIIb subunit, putative [Plasmodium falciparum
3D7]
gi|23497541|gb|AAN37082.1|AE014824_1 transcription factor IIIb subunit, putative [Plasmodium falciparum
3D7]
Length = 748
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 111/183 (60%), Gaps = 6/183 (3%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
S + + A+R Y +A+ RNFT GR V ASCLY CR++ P +LIDFS+ L V
Sbjct: 109 SSQHIEAAQRIYLMALQRNFTMGRNNSYVAASCLYTICRREKSPIMLIDFSDILQTPVKP 168
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRD 131
LG +L+L ++L+I + +DPS+FL +F +L L KV T ++ +M RD
Sbjct: 169 LGKTFLKLLRLLHIN-----VPNIDPSLFLERFAHKLNLKNDIYKVTYTGIKLIQAMTRD 223
Query: 132 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 191
WI+TGR+P+GLCGAAL +S HG+ + + I IV I T++KRL EF+NT + +
Sbjct: 224 WISTGRRPTGLCGAALLISTRMHGICINSNTIADIVRISNPTIIKRLAEFKNTSTAQIKA 283
Query: 192 EDF 194
+F
Sbjct: 284 SEF 286
>gi|85000687|ref|XP_955062.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303208|emb|CAI75586.1| unnamed protein product [Theileria annulata]
Length = 531
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 108/178 (60%), Gaps = 5/178 (2%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ AKR Y +AV RNFT GR V + CLY CR++ P LLIDFS+ L V +G +
Sbjct: 101 IDAAKRIYLLAVQRNFTMGRNNLHVASCCLYTICRRERTPHLLIDFSDVLLTPVKTIGQI 160
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+++L ++L+I+ + +DPSIF +F +L K+ +T I+ +M RDW+ TG
Sbjct: 161 FMKLVRMLHIS-----VPNIDPSIFFERFATQLQLKDIHKIINTGNRIIQAMNRDWLCTG 215
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
R+P+GLCGAAL V+A HG+ S + +V I T++KRL EF+ T + + + +F
Sbjct: 216 RRPTGLCGAALLVAARFHGISLSAESVSSVVRISHPTILKRLSEFKVTSTAHIKVSEF 273
>gi|255719280|ref|XP_002555920.1| KLTH0H00924p [Lachancea thermotolerans]
gi|238941886|emb|CAR30058.1| KLTH0H00924p [Lachancea thermotolerans CBS 6340]
Length = 571
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 123/195 (63%), Gaps = 7/195 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + +AL I E + A ++Y +A++ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 90 LRAVSHALGIPEY--VTDAATQWYTLALSNNFVQGRRSQNVIAACLYIACRKEKTHHMLI 147
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS+ L ++VY +GA +L++ + L+I L DPS+F+ F ++L G K KV
Sbjct: 148 DFSSRLQVSVYSIGATFLKMVKALHITK----LPLADPSLFIQHFAEKLDLGDKKIKVVK 203
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M RDW+ GR+P+G+ GA L ++ + L+ + S+IV + H+ E TL +RL
Sbjct: 204 DAVKLAQRMARDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEIVAVSHVAEETLQQRLN 263
Query: 180 EFENTDSGSLTIEDF 194
EF++T SG L+I +F
Sbjct: 264 EFKSTKSGKLSINEF 278
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 5/140 (3%)
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 391
++ +D ++ D+DD E+D L +EE K+ IW +N ++L EQ +K A A+
Sbjct: 435 SKVADDPEDLQDVDDEELDSQLLDEEASKLKERIWIGINGDFLLEQESKRLKQEADMASG 494
Query: 392 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALEATRRMLT 449
AS K G + AA+ A V K+ AA A+++G TA + + M+
Sbjct: 495 NASVKK--RGGPRRKRKAASDADGVLADIKDDSGLHAALKLAEDTGDFTTA-DNVKNMIQ 551
Query: 450 KKRLSSKINYDVLEKLFDDS 469
K S KINY+ ++ LF S
Sbjct: 552 KSSFSKKINYNAIDGLFGSS 571
>gi|160333889|ref|NP_001037055.1| TFIIB-related factor [Bombyx mori]
gi|22417141|gb|AAM96688.1| TFIIB-related Factor [Bombyx mori]
Length = 661
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 144/522 (27%), Positives = 223/522 (42%), Gaps = 159/522 (30%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ +A FY +A++R+ T GR QA+C+Y+ CR + P LLID S+ + + Y+LG
Sbjct: 107 IDIACNFYKMALSRHLTIGRPVTHTQAACVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRA 166
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITT 135
Y +L + L I + DP +++ +F +L +V TA ++ MK+D I +
Sbjct: 167 YFKLSRALCIN-----IPPTDPCLYILRFASQLKFEDKQHEVSMTALRLVQRMKKDSIHS 221
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+PSG+CGAAL ++A H + SDIV+IV + E+TL KR+ EF +T S +LT+
Sbjct: 222 GRRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRKRMFEFGDTPSSALTL---- 277
Query: 196 ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGG 255
EEFMT+ LE
Sbjct: 278 -----------------------------------------------EEFMTVD--LEEE 288
Query: 256 ADPPAFQVA---ERERMVKASAEEN-----SSFERESDSPF---MSRVDKV------QSP 298
DPPAF+ A ++ER+ K EE+ + ++E ++ MSR KV SP
Sbjct: 289 QDPPAFRAARKRDKERLQKLMEEEDGEKELTELQKEIEAQIEKDMSRRRKVCSASYTSSP 348
Query: 299 EP---ESIGVPKNCTTQTAS-----------------NEG---EGDHTKTP-----GVDA 330
P E+IG T+ A+ NEG E H K G D
Sbjct: 349 GPVSQENIGSEDEDATRFAAEETLEIIDEITKDIRPKNEGPKEENKHEKMKLEKGLGPDL 408
Query: 331 TTEASDGSDN--------------------------FSDIDDFEVDGYLHNEEEKHYKKI 364
SD+ S D+ +D + + +E +K
Sbjct: 409 AVIGLGPSDDKNADKFVKPEPKQTFCKDLQNADELVMSQRDEEYIDSLIMSADEAKHKTK 468
Query: 365 IWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQ 424
+W ++N YL+EQ K QE+ A + +++ +K+
Sbjct: 469 LWNKVNAGYLKEQKIK-------------------------QEIKAKE---LEENKDKKK 500
Query: 425 QKRAAEAKNSG-PAQTALEATRRMLTKKRLSSKINYDVLEKL 465
+ R + K A TA EA +ML +K++SSKINYD+L+ L
Sbjct: 501 KVRGSYRKKVAINAATAGEAIEKMLAEKKMSSKINYDILKSL 542
>gi|71027505|ref|XP_763396.1| transcription factor IIIb subunit [Theileria parva strain Muguga]
gi|68350349|gb|EAN31113.1| transcription factor IIIb subunit, putative [Theileria parva]
Length = 526
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 109/178 (61%), Gaps = 5/178 (2%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ AKR Y +AV RNFT GR V + CLY CR++ P LLIDFS+ L V +G +
Sbjct: 101 IDAAKRIYLLAVQRNFTMGRNNLHVASCCLYTICRREKTPHLLIDFSDVLLTPVKTIGQI 160
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+++L ++L+I+ + VDPSIF +F +L K+ +T I+ +M RDW+ TG
Sbjct: 161 FMKLVRMLHIS-----VPNVDPSIFFERFATQLKLKDIHKIINTGNRIIQAMNRDWLCTG 215
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
R+P+GLCGAAL V+A HG+ S + +V I T++KRL EF+ T + ++ + +F
Sbjct: 216 RRPTGLCGAALLVAARFHGIPLSAEAVSSVVRISHPTILKRLSEFKVTSTANIKVSEF 273
>gi|157820901|ref|NP_001100231.1| transcription factor IIIB 90 kDa subunit [Rattus norvegicus]
gi|149044025|gb|EDL97407.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae) (predicted),
isoform CRA_a [Rattus norvegicus]
Length = 686
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 132/429 (30%), Positives = 198/429 (46%), Gaps = 70/429 (16%)
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDIL 125
+NVY LG +L L + L I + +DP +++ +F L G N +V TA +L
Sbjct: 167 QVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLL 221
Query: 126 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 185
MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T
Sbjct: 222 QRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTP 281
Query: 186 SGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMNEVLCKH 226
+ LTI++FM R K+L + ++ L ++S + +
Sbjct: 282 TSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISTYQDAIEIE 341
Query: 227 KDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERE--- 283
+ +P A G + ++ G + + P + E E + A++ N F RE
Sbjct: 342 LENSRPKAKGALANLSKD----GSGEDATSSPFCEEDTEDEELEAAASHMNKDFYRELLG 397
Query: 284 SDSPFMSRVDKVQSPEP---ESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASD 336
+D + D P ES+ P TA++ G D + +P D + D
Sbjct: 398 ADGGSEAAEDADGGSRPLALESLLGP----LPTAASLGISDSIRECISSPSGDPKDSSGD 453
Query: 337 GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 396
G + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 454 GELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQKEKEARIAKEK-------- 505
Query: 397 NCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSK 456
EL KE + K++ + + A TA EA +ML +K++SSK
Sbjct: 506 ----------ELGI---------YKEHKPKKSCKRREPILASTAGEAIEKMLEQKKISSK 546
Query: 457 INYDVLEKL 465
INY VL L
Sbjct: 547 INYSVLRDL 555
>gi|50302609|ref|XP_451240.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|52788254|sp|P46070.2|TF3B_KLULA RecName: Full=Transcription factor IIIB 70 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1
gi|49640371|emb|CAH02828.1| KLLA0A05434p [Kluyveromyces lactis]
Length = 556
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 7/205 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++ + ALNI E + A ++Y +A++ NF +GR+++ V A+CLY+ACR++ +LI
Sbjct: 98 LKAVSYALNIPEY--VTDAAFQWYRLALSNNFVQGRKSQNVIAACLYIACRKERTHHMLI 155
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS+ L ++VY +GA +L+L + L I L DPS+F+ F ++L G K KV
Sbjct: 156 DFSSRLQVSVYSIGATFLKLAKKLQIVK----LPLADPSLFIQHFAEKLELGDKKIKVIR 211
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + +M RDW+ GR+P+G+ GA L ++ + L+ + S+IV I H+ E TL +RL
Sbjct: 212 DAVKLAQTMSRDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEIVAISHVAEETLQQRLN 271
Query: 180 EFENTDSGSLTIEDFMARKKELHEG 204
EF+NT S L++++F + E++EG
Sbjct: 272 EFKNTTSAKLSVKEFRDDETEVNEG 296
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 391
++ SD +N D+DD E+D +L +EE K+ IW ++N +YL EQ +K A A+
Sbjct: 423 SKVSDHPENLDDVDDAELDSHLLDEEASKLKERIWIDINGDYLIEQESKRLKQEADLASG 482
Query: 392 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 451
S + ++ + ++A++ K + + + A + +L K
Sbjct: 483 NTSLRKK----RSKRTNRNQSSASIVKVQVDGLPLDVSVDDADAVDVVAAGGVKNLLQKT 538
Query: 452 RLSSKINYDVLEKLF 466
S KINYD + LF
Sbjct: 539 TFSKKINYDAINGLF 553
>gi|619493|emb|CAA87399.1| TFIIB related subunit of TFIIIB (BRF1) [Kluyveromyces lactis]
Length = 556
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 7/205 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++ + ALNI E + A ++Y +A++ NF +GR+++ V A+CLY+ACR++ +LI
Sbjct: 98 LKAVSYALNIPEY--VTDAAFQWYRLALSNNFVQGRKSQNVIAACLYIACRKERTHHMLI 155
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS+ L ++VY +GA +L+L + L I L DPS+F+ F ++L G K KV
Sbjct: 156 DFSSRLQVSVYSIGATFLKLAKKLQIVK----LPLADPSLFIQHFAEKLELGDKKIKVIR 211
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + +M RDW+ GR+P+G+ GA L ++ + L+ + S+IV I H+ E TL +RL
Sbjct: 212 DAVKLAQTMSRDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEIVAISHVAEETLQQRLN 271
Query: 180 EFENTDSGSLTIEDFMARKKELHEG 204
EF+NT S L++++F + E++EG
Sbjct: 272 EFKNTTSAKLSVKEFRDDETEVNEG 296
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 391
++ SD +N D+DD E+D +L +EE K+ IW ++N +YL EQ +K A A+
Sbjct: 423 SKVSDHPENLDDVDDAELDSHLLDEEASKLKERIWIDINGDYLIEQESKRLKQEADLASG 482
Query: 392 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 451
S + ++ + ++A++ K + + + A + +L K
Sbjct: 483 NTSLRKK----RSKRTNRNQSSASIVKVQVDGLPLDVSVDDADAVDVVAAGGVKNLLQKT 538
Query: 452 RLSSKINYDVLEKLF 466
S KINYD + LF
Sbjct: 539 TFSKKINYDAINGLF 553
>gi|367004042|ref|XP_003686754.1| hypothetical protein TPHA_0H01120 [Tetrapisispora phaffii CBS 4417]
gi|357525056|emb|CCE64320.1| hypothetical protein TPHA_0H01120 [Tetrapisispora phaffii CBS 4417]
Length = 602
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 125/195 (64%), Gaps = 7/195 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + +AL I D I A ++Y +A+ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 91 LRAVSHALRI--QDYITDAAFQWYKLALHHNFVQGRRSQNVIAACLYVACRKEKTHHMLI 148
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L G K KV
Sbjct: 149 DFSSRLQVSVYSIGATFLKMVKRLHITN----LPLADPSLFIQHFAEKLDLGEKKIKVIK 204
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M +DW+ GR+P+G+ GA + ++ + L+ + S+IV I H+ E TL +RL
Sbjct: 205 DAVKLAQRMSKDWMYEGRRPAGIAGACILLACRMNNLRRTHSEIVAISHVAEETLQQRLN 264
Query: 180 EFENTDSGSLTIEDF 194
EF+NT++G L+I++F
Sbjct: 265 EFKNTNTGKLSIKEF 279
>gi|401396470|ref|XP_003879829.1| hypothetical protein NCLIV_002820 [Neospora caninum Liverpool]
gi|325114237|emb|CBZ49794.1| hypothetical protein NCLIV_002820 [Neospora caninum Liverpool]
Length = 656
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 109/183 (59%), Gaps = 6/183 (3%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
S + + A R Y +A RNFT GRR+ V ++CLY CR++ P LLIDF + L NV
Sbjct: 124 SQQHISSAHRLYLMATQRNFTLGRRSVLVASACLYAICRRERTPHLLIDFCDVLRTNVRA 183
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRD 131
LG V+++L +VL++ + VDPS+FL +F ++ G V T ++ +M RD
Sbjct: 184 LGQVFMKLLRVLHLQ-----VPHVDPSLFLERFACQMQLGDKTHTVAQTGVRLIQAMNRD 238
Query: 132 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 191
WI+TGR+P GLCGAAL ++A H + + DI IV + T+ +RL EF+ T + L +
Sbjct: 239 WISTGRRPMGLCGAALLIAARYHNFQMNAEDIAHIVRVSGPTVNRRLQEFKQTATAQLAV 298
Query: 192 EDF 194
DF
Sbjct: 299 ADF 301
>gi|449544216|gb|EMD35190.1| hypothetical protein CERSUDRAFT_116658 [Ceriporiopsis subvermispora
B]
Length = 662
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 122/197 (61%), Gaps = 11/197 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLL 59
++Q+ A+ + E ++ A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++L
Sbjct: 89 IQQVATAMRLSEVVQLA--ATRLYTLAVEHKFTKGRKSMNVVAVCLYVACRQKETRNYML 146
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KV 117
IDFS+ L +NV+ELG YLQL Q L + L VDPS ++ +F LL G + +V
Sbjct: 147 IDFSDLLQVNVFELGHTYLQLVQTLNLR-----LPLVDPSHYISRFA-ALLEFGEETHQV 200
Query: 118 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
A ++A RDW+ GR+P+G+CGA L ++A + + S ++V++V I + TL KR
Sbjct: 201 ALDATRLVARFDRDWLARGRRPAGICGACLLLAARMNNFRRSVEEVVQVVKIADTTLRKR 260
Query: 178 LIEFENTDSGSLTIEDF 194
L EF T SG L++ DF
Sbjct: 261 LEEFRKTPSGQLSLADF 277
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 51/119 (42%), Gaps = 26/119 (21%)
Query: 352 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 411
+L EEE K+ +W EMN +YLE AAK A A+ A
Sbjct: 468 FLLTEEEVRIKERVWVEMNLDYLEAIAAKSEQQAEAE----------------------A 505
Query: 412 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKINYDVLEKLFDDS 469
K RK + R A + TA E+ R ++ K + S +INYD L+ LFD S
Sbjct: 506 KEKKSRKRRKTSNKPRDASTPH---GSTAAESVRNLIKKNPKYSKRINYDALKDLFDGS 561
>gi|213407030|ref|XP_002174286.1| transcription initiation factor IIB [Schizosaccharomyces japonicus
yFS275]
gi|212002333|gb|EEB07993.1| transcription initiation factor IIB [Schizosaccharomyces japonicus
yFS275]
Length = 508
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 118/183 (64%), Gaps = 6/183 (3%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
+D V A R++ +A+ NF KGRR++ V ASCLY+ CR +LIDFS+ L INV++
Sbjct: 98 TDRHVEAAVRYFTLAINHNFIKGRRSQYVVASCLYVECRMAKTSHMLIDFSDVLQINVFK 157
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRD 131
LG+ +L+LC+VL I L +DPSI++ +F L G ++V A +++ M RD
Sbjct: 158 LGSTFLKLCRVLRI-----TLPLLDPSIYIGRFAAMLEFGSETQRVASDATRLVSRMNRD 212
Query: 132 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 191
W+ GR+P+G+CGA L ++A + + S ++V +V + +AT+ KRL EF +T+SG L++
Sbjct: 213 WMQIGRRPAGICGACLLIAARMNNFRRSVREVVHVVKVADATIQKRLEEFRDTESGELSV 272
Query: 192 EDF 194
DF
Sbjct: 273 ADF 275
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 24/126 (19%)
Query: 343 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 402
D +D E+D +L + E K +W E+N++YL +Q K L
Sbjct: 407 DFNDEEIDKFLLSSNEVEAKTRVWMELNKDYLADQERKR--------------------L 446
Query: 403 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 462
+A ++L K RK K + + E G A TA+E+ + M+ ++ S KINY+ L
Sbjct: 447 KAEEDLKRGIVRQPRKRRKYKPRDSSTE----GVASTAIESAKEMMQQRTFSKKINYEAL 502
Query: 463 EKLFDD 468
+ LF+D
Sbjct: 503 DHLFND 508
>gi|95007308|emb|CAJ20528.1| transcription factor IIIb subunit, putative [Toxoplasma gondii RH]
Length = 644
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 109/183 (59%), Gaps = 6/183 (3%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
S + + A R Y +A RNFT GRR+ V ++CLY CR++ P LLIDF + L NV
Sbjct: 85 SQQHISSAHRLYLMATQRNFTLGRRSVLVASACLYAICRRERTPHLLIDFCDVLRTNVRA 144
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRD 131
LG V+++L +VL++ + VDPS+FL +F ++ G V T ++ +M RD
Sbjct: 145 LGQVFMKLLRVLHLQ-----VPHVDPSLFLERFACQMQLGDKTHTVAQTGVRLIQAMNRD 199
Query: 132 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 191
WI+TGR+P GLCGAAL ++A H + + DI IV + T+ +RL EF+ T + L +
Sbjct: 200 WISTGRRPMGLCGAALLIAARYHNFQMNAEDIAHIVRVSGPTVNRRLQEFKQTATAQLAV 259
Query: 192 EDF 194
DF
Sbjct: 260 ADF 262
>gi|221482805|gb|EEE21136.1| transcription factor IIIB subunit, putative [Toxoplasma gondii GT1]
Length = 675
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 109/183 (59%), Gaps = 6/183 (3%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
S + + A R Y +A RNFT GRR+ V ++CLY CR++ P LLIDF + L NV
Sbjct: 85 SQQHISSAHRLYLMATQRNFTLGRRSVLVASACLYAICRRERTPHLLIDFCDVLRTNVRA 144
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRD 131
LG V+++L +VL++ + VDPS+FL +F ++ G V T ++ +M RD
Sbjct: 145 LGQVFMKLLRVLHLQ-----VPHVDPSLFLERFACQMQLGDKTHTVAQTGVRLIQAMNRD 199
Query: 132 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 191
WI+TGR+P GLCGAAL ++A H + + DI IV + T+ +RL EF+ T + L +
Sbjct: 200 WISTGRRPMGLCGAALLIAARYHNFQMNAEDIAHIVRVSGPTVNRRLQEFKQTATAQLAV 259
Query: 192 EDF 194
DF
Sbjct: 260 ADF 262
>gi|237840591|ref|XP_002369593.1| transcription factor IIIB subunit, putative [Toxoplasma gondii
ME49]
gi|211967257|gb|EEB02453.1| transcription factor IIIB subunit, putative [Toxoplasma gondii
ME49]
gi|221503402|gb|EEE29100.1| transcription factor IIIB subunit, putative [Toxoplasma gondii VEG]
Length = 675
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 109/183 (59%), Gaps = 6/183 (3%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
S + + A R Y +A RNFT GRR+ V ++CLY CR++ P LLIDF + L NV
Sbjct: 85 SQQHISSAHRLYLMATQRNFTLGRRSVLVASACLYAICRRERTPHLLIDFCDVLRTNVRA 144
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRD 131
LG V+++L +VL++ + VDPS+FL +F ++ G V T ++ +M RD
Sbjct: 145 LGQVFMKLLRVLHLQ-----VPHVDPSLFLERFACQMQLGDKTHTVAQTGVRLIQAMNRD 199
Query: 132 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 191
WI+TGR+P GLCGAAL ++A H + + DI IV + T+ +RL EF+ T + L +
Sbjct: 200 WISTGRRPMGLCGAALLIAARYHNFQMNAEDIAHIVRVSGPTVNRRLQEFKQTATAQLAV 259
Query: 192 EDF 194
DF
Sbjct: 260 ADF 262
>gi|156845831|ref|XP_001645805.1| hypothetical protein Kpol_1010p65 [Vanderwaltozyma polyspora DSM
70294]
gi|156116473|gb|EDO17947.1| hypothetical protein Kpol_1010p65 [Vanderwaltozyma polyspora DSM
70294]
Length = 577
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 124/195 (63%), Gaps = 7/195 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + +AL I E I A ++Y +A+ +NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 91 LRAVSHALGIPEY--ITDAAHQWYKLALHQNFVQGRRSQNVIASCLYIACRKEKTHHMLI 148
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L G K KV
Sbjct: 149 DFSSRLQVSVYSIGATFLKMVKRLHITN----LPLADPSLFIQHFAEKLDLGDKKIKVVK 204
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M +DW+ GR+P+G+ GA + ++ + L+ + S+IV + H+ E TL +RL
Sbjct: 205 DAVKLAQRMSKDWMYEGRRPAGIAGACILLACRMNNLRRTHSEIVAVSHVAEETLQQRLN 264
Query: 180 EFENTDSGSLTIEDF 194
EF+NT S L+I++F
Sbjct: 265 EFKNTKSAKLSIKEF 279
>gi|313217012|emb|CBY38206.1| unnamed protein product [Oikopleura dioica]
Length = 357
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 111/181 (61%), Gaps = 11/181 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACR--QKSKPFLLIDFSNYLNINVYELGAVY 77
A +Y +A+ ++FT+GRR EQV ASC+YL+CR + +L+DFS L +NVY LG +
Sbjct: 102 AYNYYRLALNKSFTRGRRAEQVYASCVYLSCRLNPRQNELMLLDFSQVLKVNVYILGKTF 161
Query: 78 LQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG----NKKVCDTARDILASMKRDWI 133
L+L Q L I +DP ++H+F +L G NK+V +T+ I+ M RDW+
Sbjct: 162 LKLSQELNITPH-----MLDPVFYIHRFAHQLGFGDSGTKNKEVMETSNRIVQRMNRDWM 216
Query: 134 TTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIED 193
T GR+P+G+CGAA ++A HG + + DI K+ I T+ KRL EF T S LTI++
Sbjct: 217 TEGRRPAGICGAAFVIAARMHGFRCNIEDITKVFKIGPNTIRKRLHEFGATPSAKLTIDE 276
Query: 194 F 194
F
Sbjct: 277 F 277
>gi|66358198|ref|XP_626277.1| cyclin domain protein [Cryptosporidium parvum Iowa II]
gi|46227281|gb|EAK88231.1| cyclin domain protein [Cryptosporidium parvum Iowa II]
Length = 648
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 113/179 (63%), Gaps = 6/179 (3%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A+R + +AV R+FT GR V ++CLY CR++ P +LIDFS+ L V LG V
Sbjct: 103 IESAQRVFLMAVQRSFTIGRNNMHVASACLYAICRREKTPHMLIDFSDVLQTPVKVLGQV 162
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 135
+++L ++L + + +DPS+F+ +F ++ G V T I+ ++ R+WITT
Sbjct: 163 FMKLLRLLRLH-----VPNIDPSMFMERFAAQMKLGEKTHAVAATGVRIVQALTRNWITT 217
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
GR+P+GLCGAAL +SA HG+ S S+I +IV I TL+KRL EF++T + LT ++F
Sbjct: 218 GRRPTGLCGAALLISARYHGIPVSSSEIAQIVRISSPTLLKRLAEFKHTSTAQLTADEF 276
>gi|67622824|ref|XP_667830.1| transcription factor IIIb subunit [Cryptosporidium hominis TU502]
gi|54658996|gb|EAL37598.1| transcription factor IIIb subunit [Cryptosporidium hominis]
Length = 646
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 113/179 (63%), Gaps = 6/179 (3%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A+R + +AV R+FT GR V ++CLY CR++ P +LIDFS+ L V LG V
Sbjct: 101 IESAQRVFLMAVQRSFTIGRNNMHVASACLYAICRREKTPHMLIDFSDVLQTPVKVLGQV 160
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 135
+++L ++L + + +DPS+F+ +F ++ G V T I+ ++ R+WITT
Sbjct: 161 FMKLLRLLRLH-----VPNIDPSMFMERFAAQMKLGEKTHAVAATGVRIVQALTRNWITT 215
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
GR+P+GLCGAAL +SA HG+ S S+I +IV I TL+KRL EF++T + LT ++F
Sbjct: 216 GRRPTGLCGAALLISARYHGIPVSSSEIAQIVRISSPTLLKRLAEFKHTSTAQLTADEF 274
>gi|323508609|dbj|BAJ77198.1| cgd5_3540 [Cryptosporidium parvum]
gi|323510533|dbj|BAJ78160.1| cgd5_3540 [Cryptosporidium parvum]
Length = 646
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 113/179 (63%), Gaps = 6/179 (3%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A+R + +AV R+FT GR V ++CLY CR++ P +LIDFS+ L V LG V
Sbjct: 101 IESAQRVFLMAVQRSFTIGRNNMHVASACLYAICRREKTPHMLIDFSDVLQTPVKVLGQV 160
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 135
+++L ++L + + +DPS+F+ +F ++ G V T I+ ++ R+WITT
Sbjct: 161 FMKLLRLLRLH-----VPNIDPSMFMERFAAQMKLGEKTHAVAATGVRIVQALTRNWITT 215
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
GR+P+GLCGAAL +SA HG+ S S+I +IV I TL+KRL EF++T + LT ++F
Sbjct: 216 GRRPTGLCGAALLISARYHGIPVSSSEIAQIVRISSPTLLKRLAEFKHTSTAQLTADEF 274
>gi|326430273|gb|EGD75843.1| hypothetical protein PTSG_07961 [Salpingoeca sp. ATCC 50818]
Length = 543
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 119/196 (60%), Gaps = 12/196 (6%)
Query: 2 RQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 61
R MK LN G D V ++Y +A + FT GR +E V A CLY+ CR++ +L+D
Sbjct: 83 RNMK--LNQGHIDAAV----KYYRMAAQQKFTAGRPSEHVAACCLYIVCREERSMLMLLD 136
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDT 120
F+++L +NVY+L + +L L L I L +DP +FL +F +L G + + T
Sbjct: 137 FADFLRVNVYKLASTFLSLRLKLSI-----TLPVIDPVLFLPRFVMQLDLGDKQHDIGRT 191
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I++ MKRDW+ GR+P+G+CGAAL ++A +G S+ D+V V +C +T+ KRL E
Sbjct: 192 AIRIVSRMKRDWLHVGRRPAGICGAALLLAARMYGFARSQKDVVHAVRVCSSTVRKRLDE 251
Query: 181 FENTDSGSLTIEDFMA 196
F T S LT+++FM+
Sbjct: 252 FAETPSARLTMDEFMS 267
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 33/115 (28%)
Query: 352 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 411
++ N+EE K +IW + N++YLE QA K A N P+
Sbjct: 456 HILNDEEVKVKTVIWTQNNQDYLERQARKREEEA-----------NAPK----------- 493
Query: 412 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 466
K +K + Q R + K+ A A R+ T+++ SSKINYD L+ LF
Sbjct: 494 ------KPKKRRNQPRLPDHKHHRGA-----ARERLKTEEKKSSKINYDSLQSLF 537
>gi|367016367|ref|XP_003682682.1| hypothetical protein TDEL_0G01040 [Torulaspora delbrueckii]
gi|359750345|emb|CCE93471.1| hypothetical protein TDEL_0G01040 [Torulaspora delbrueckii]
Length = 545
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 122/195 (62%), Gaps = 7/195 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + +ALNI E I A ++Y +A+A NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 90 LRAVSHALNIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIAACLYVACRKEKTHHMLI 147
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS+ L + VY +GA +L++ + L+I L DPS+F+ F ++L G K KV
Sbjct: 148 DFSSRLQVGVYSIGATFLKMVKRLHITK----LPLADPSLFIQHFAEKLDLGDKKIKVVR 203
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M RDW+ GR+P+G+ GA + ++ + L+ + S+IV + H+ E T+ +RL
Sbjct: 204 DAVKLAQRMSRDWMYEGRRPAGIAGACILLACRMNNLRRTHSEIVAVSHVAEETIQERLN 263
Query: 180 EFENTDSGSLTIEDF 194
EF+ T +G L+I +F
Sbjct: 264 EFKGTKAGKLSINEF 278
>gi|401841983|gb|EJT44282.1| BRF1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 597
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 130/207 (62%), Gaps = 9/207 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M +DW+ GR+P+G+ GA + ++ + L+ + +++V + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEVVAVSHVAEETLQQRLN 260
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVA 206
EF+NT + L+++DF R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQDF--RENDVEDGEA 285
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 10/144 (6%)
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 387
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 454 SKVSDDPDNLGDVDDEELNAHLLNEEASKLKERIWVGLNADFLLEQESKRLKQEADIATG 513
Query: 388 KAAL---EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 442
++ +N + + + AAAA + ++K AA A+ +G TA +
Sbjct: 514 NTSVKKKRTRRRNNTRNNEPTKSVDAAAAIGLMSDLQDKSGLHAALKAAEENGDFTTA-D 572
Query: 443 ATRRMLTKKRLSSKINYDVLEKLF 466
+ + ML K S KINYD ++ LF
Sbjct: 573 SVKNMLQKASFSKKINYDAIDGLF 596
>gi|209877443|ref|XP_002140163.1| transcription factor IIIB subunit BRF-1 [Cryptosporidium muris
RN66]
gi|209555769|gb|EEA05814.1| transcription factor IIIB subunit BRF-1, putative [Cryptosporidium
muris RN66]
Length = 611
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 112/179 (62%), Gaps = 6/179 (3%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A+R + +AV RNFT GR V ++CLY CR++ P +LIDFS+ L V LG V
Sbjct: 100 IESAQRVFLMAVQRNFTIGRNNMYVASACLYAICRREKTPHMLIDFSDVLQAPVKVLGQV 159
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITT 135
+++L ++L + + +DPS+F+ +F ++ L + T I+ ++ RDWITT
Sbjct: 160 FMKLLRLLRLH-----VPNIDPSMFMERFAAQMNLGNKTHSIAATGVRIVQALTRDWITT 214
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
GR+P+GLCGAAL +SA HG+ S ++I +IV I TL+KRL EF++T + LT +F
Sbjct: 215 GRRPTGLCGAALLISARYHGIPVSSNEIAQIVRISSPTLLKRLAEFKHTSTAQLTAAEF 273
>gi|358422124|ref|XP_875578.3| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa
subunit [Bos taurus]
Length = 595
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 107/171 (62%), Gaps = 8/171 (4%)
Query: 26 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 85
+AV+++ T+GRRT V A+CLYL CR + P +L+D S+ L +N+ LG L L +
Sbjct: 1 MAVSKHLTRGRRTAHVVAACLYLVCRTEGTPHMLLDLSDLLQVNLVTLGLSGLLLATL-- 58
Query: 86 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 144
+ DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 59 -----RCVSSADPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 113
Query: 145 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
AAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 114 AALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM 164
>gi|150863862|ref|XP_001382483.2| Transcription factor IIIB 70 kDa subunit (TFIIIB) (B-related
factor) (BRF) [Scheffersomyces stipitis CBS 6054]
gi|149385118|gb|ABN64454.2| Transcription factor IIIB 70 kDa subunit (TFIIIB) (B-related
factor) (BRF) [Scheffersomyces stipitis CBS 6054]
Length = 570
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 118/195 (60%), Gaps = 7/195 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +AL I +D I A ++ +A+ +NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 92 IRKIAHALKI--ADYIAESAGGWFKLALTQNFVQGRRSQNVLAACLYVACRKERTHHMLI 149
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L I+VY LGA +L+L + L I L DPSIF+ F ++L KV
Sbjct: 150 DFSSRLQISVYSLGATFLKLVKALNIVK----LPLADPSIFIQHFAEKLDFKEKATKVVK 205
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M DWI GR+P+G+ GA + ++A + + + S+IV + H+ E TL KRL
Sbjct: 206 DAVKLAHQMSSDWIDAGRRPAGIAGACVLLAARMNNFRRTHSEIVAVAHVAEETLQKRLN 265
Query: 180 EFENTDSGSLTIEDF 194
EF+ T SG LT+ F
Sbjct: 266 EFKKTASGVLTVSQF 280
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 15/146 (10%)
Query: 329 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAA 384
D + S ++ SD DD V EE K+ IW +N +++ Q K EA
Sbjct: 436 DILAKVSSSTELNSDDDDEVVLESELTPEEASIKERIWTGLNHDFMVAQERKRLKQEADE 495
Query: 385 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 444
+ K + QE A +V + +G A TA E+
Sbjct: 496 LTGNTSGTTRKKRARTAPEVVQEYGVKDALSVI-----------GVDERTGEALTAAESA 544
Query: 445 RRMLTKKRLSSKINYDVLEKLFDDSV 470
+ ML+KK S KINYD ++ LF +S+
Sbjct: 545 KIMLSKKSFSKKINYDRIDDLFSNSM 570
>gi|399218262|emb|CCF75149.1| unnamed protein product [Babesia microti strain RI]
Length = 592
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 121/199 (60%), Gaps = 8/199 (4%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
S + V A+R Y +AV R+FT GR V A CLY+ CR++ P LLIDFS+ L V
Sbjct: 99 STQHVEAAQRIYLLAVQRSFTIGRNNLHVAACCLYIICRREKTPHLLIDFSDVLQTPVKI 158
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRD 131
LG ++++L ++L+I+ + VDPSIF +F +L + +++ T ++ +M RD
Sbjct: 159 LGQIFMKLVRLLHIS-----VPNVDPSIFFERFASQLKIKDKIRQITATGIRLIQAMDRD 213
Query: 132 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 191
W+ TGR+P+GLCGAAL V++ HG+ S+S + +V I T++KRL EF+ T + LT
Sbjct: 214 WLCTGRRPTGLCGAALVVASRYHGVPLSESAVANVVRISNYTIIKRLSEFKLTATARLTR 273
Query: 192 EDFMARKKELHEGVAANLP 210
DF + +L E +LP
Sbjct: 274 GDF--ERLDLTELPQLSLP 290
>gi|328851991|gb|EGG01140.1| hypothetical protein MELLADRAFT_92647 [Melampsora larici-populina
98AG31]
Length = 649
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 125/208 (60%), Gaps = 11/208 (5%)
Query: 4 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 63
M + LN+ E I A RF+ +A++ F GRR+ V ASC+Y+ACR P +LID S
Sbjct: 96 MAHGLNLSEV--IAESAHRFFTLALSNGFVMGRRSPYVLASCIYVACRMNKLPTMLIDIS 153
Query: 64 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTAR 122
++L +NV+ +GA YL+L + L + + +DPS+++ +F L G +KV A
Sbjct: 154 DFLQVNVFIVGATYLKLVKELCLTQ----IPLIDPSLYISRFAALLEFGEETEKVAYDAT 209
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
++ DWITTGR+PSG+ GA L ++A + K S +IV++V I + T+ KRL EF+
Sbjct: 210 RLVKRFDHDWITTGRRPSGIAGACLLIAARMNNFKRSVLEIVQVVKIADVTIKKRLDEFK 269
Query: 183 NTDSGSLTIEDFMARKKELHEGVAANLP 210
+++G +T+EDF R + L E A N P
Sbjct: 270 RSETGKMTVEDF--RNQWLEE--AENPP 293
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 25/128 (19%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D+ SD+D+ E+D ++ NE E K +W E+NREYLE+ A K+ A + Y +
Sbjct: 454 DHLSDLDEDELDCFILNENEVEIKTRVWMELNREYLEKLAEKKEREATGEIKPTKKYASK 513
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 458
P+ AK R +++N G A + +KK+LSSKIN
Sbjct: 514 PK----------------AKPR---------DSENPGGATVGESVMNMINSKKKLSSKIN 548
Query: 459 YDVLEKLF 466
Y + + LF
Sbjct: 549 YKIADSLF 556
>gi|17531397|ref|NP_495526.1| Protein BRF-1 [Caenorhabditis elegans]
gi|351065110|emb|CCD66264.1| Protein BRF-1 [Caenorhabditis elegans]
Length = 759
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 138/484 (28%), Positives = 213/484 (44%), Gaps = 95/484 (19%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
++ A FY + V+RN T+GR V A C+Y+ CR ++ LL+DFS+ INV++LG
Sbjct: 102 MNTAFNFYKMCVSRNLTRGRNRSSVVAVCMYITCRLENTAHLLLDFSDVTQINVFDLGRN 161
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITT 135
L + L I L DP +++ +F L G +K V + A ++ MKRDW++T
Sbjct: 162 LNYLSRSLRIN-----LPSTDPCLYIMRFACVLDFGDKQKEVVNLATRLVQRMKRDWMST 216
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+P+G+CGAAL ++A + S +DIV++VHI E + KRL EF T SGSLTI++F
Sbjct: 217 GRRPTGICGAALLIAARSLNFNRSINDIVRVVHISEGVIRKRLDEFSQTPSGSLTIDEFS 276
Query: 196 ARKKELHEGVAA-----------NLPNNGPKVSGMNEVLC--------------KHKDTG 230
E E A L + M E L K K +
Sbjct: 277 TVDLEHSEDPPAYRESRRKAREDQLRKEAEQAESMKEQLGEMEAHVEAALDKKRKEKFSK 336
Query: 231 KPFACGLCRSCYEE---FMTISE------GLEGGADPPAFQVAERERMVKASAEENSSFE 281
P+A + + +E T++E GLE GAD E R + N++ E
Sbjct: 337 SPYARMISENLGKENDKMQTLTETVVESSGLEKGAD-------EMVRNEIINTVFNAAEE 389
Query: 282 RESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNF 341
S + + DK + P ES+G+ + + P V+A E
Sbjct: 390 DPCTSNSLEKYDKYR-PSLESLGIKRTSEPEPEP-------VPHPIVNADLE-------- 433
Query: 342 SDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEG 401
DI D E+D Y+ E E K W + N E A KE + L K
Sbjct: 434 EDISDSEIDSYILTESEVAIKTDYWMKANGE-----AMKEIEEKKRERELNGGVK----- 483
Query: 402 LQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDV 461
+K+ + R + ++ A A +++ +K+LS+K+NY++
Sbjct: 484 ------------------KKKPRSNRKTDTTSTSVAS----AVEKVIAEKKLSNKVNYEM 521
Query: 462 LEKL 465
L+ L
Sbjct: 522 LKDL 525
>gi|167516968|ref|XP_001742825.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779449|gb|EDQ93063.1| predicted protein [Monosiga brevicollis MX1]
Length = 285
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 116/195 (59%), Gaps = 8/195 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++Q+ N + + + +A +Y AV FT+GR E V A+CLY+ CRQ+ +L+
Sbjct: 84 IQQLANKMQMNSHH--IDMAVNYYKQAVEHRFTQGRPKEHVVAACLYIVCRQQKTSHMLL 141
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 119
DFS+ L +NVY+L A Y+QLC L + L VDP +++ +F + G +V
Sbjct: 142 DFSDQLRVNVYKLAATYMQLCNKLLTS-----LPVVDPVLYIPRFAHHMRFGELTHEVSK 196
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA I++ MKRDWI GR+PSG+CGAAL ++A HG + + D+ + VH+ T+ RL
Sbjct: 197 TALRIVSRMKRDWIHVGRRPSGVCGAALLLAARMHGFQRNLQDVQQAVHVGIQTVRARLE 256
Query: 180 EFENTDSGSLTIEDF 194
+F NT+S LT E F
Sbjct: 257 DFGNTESSKLTPEQF 271
>gi|255721757|ref|XP_002545813.1| hypothetical protein CTRG_00594 [Candida tropicalis MYA-3404]
gi|240136302|gb|EER35855.1| hypothetical protein CTRG_00594 [Candida tropicalis MYA-3404]
Length = 553
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 129/480 (26%), Positives = 220/480 (45%), Gaps = 78/480 (16%)
Query: 14 DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 73
D I A ++ +A+ NF +GRR+ V A+CLY+ACR++ +LIDFS+ L I+VY L
Sbjct: 106 DYIADAAAEWFRLALTLNFVQGRRSHNVLATCLYVACRKERTHHMLIDFSSRLQISVYSL 165
Query: 74 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDW 132
GA +L++ + L+I L DPS+F+ F ++L KV A + M DW
Sbjct: 166 GATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFKDKATKVAKDAVKLAHRMAADW 221
Query: 133 ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIE 192
I GR+P+G+ GA + ++A + + S ++IV + H+ E TL +RL EF+ T +G L+I+
Sbjct: 222 IHEGRRPAGIAGACVLLAARMNNFRRSHAEIVAVSHVGEETLQRRLNEFKKTKAGQLSIK 281
Query: 193 DFMARKKELHEGVAANLP----NNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTI 248
F +E+ ++N P N ++ ++ + +DT +E I
Sbjct: 282 SF----REVEHLESSNPPSFEKNRAMELKIAKKLQQQQQDT------------FEGLTKI 325
Query: 249 SEGLEGGADPPAFQVAERE---RMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGV 305
+E G D P +V + E +++ + + + ++ + M R+ K++ E+
Sbjct: 326 TEA--NGDDIPLKKVDKEELQKQILLNTILSDITITSDTLNEQMDRILKMKKTSLENSLY 383
Query: 306 PKNCTTQTASNEGEGDHTKT-------------PGVDATTE--ASDGSDNFSDIDDFEVD 350
T SN E D K P D E +S+ N D D+ ++
Sbjct: 384 K---TPYELSNSQESDLDKIWDMNRPRNLVKNLPKTDEILEKVSSEMELNSDDDDEIVME 440
Query: 351 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 410
L EEE K+ IW +N +Y+ EQ K + +EA EL
Sbjct: 441 SKL-TEEEIAIKERIWTGLNHDYMVEQEKK-------RLKMEAD------------ELTG 480
Query: 411 AAAAAVAKSRKEKQQKRAA----------EAKNSGPAQTALEATRRMLTKKRLSSKINYD 460
+ + +R++K + E G ++A ++ +R + K +S KINYD
Sbjct: 481 NTSNSSGGNRRKKNKNSLPPELRKDFGDIELDEDGTPRSAADSAKRYIAKTSVSKKINYD 540
>gi|388583139|gb|EIM23442.1| BRF1-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 806
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 118/195 (60%), Gaps = 8/195 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+RQ+ AL I E+ + +R Y +AV NF +GR+ + ++CLY ACR + +LI
Sbjct: 81 VRQLAAALRISEA--VAESGERIYTLAVQNNFIRGRKAVYIVSACLYAACRLQKDSHMLI 138
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 119
DFS++L INV+ LG YL+L + L + L ++DPSI++ +F L G ++V
Sbjct: 139 DFSDFLQINVFALGTTYLRLVERLDLK-----LPEMDPSIYIQRFASLLEFGQETQRVAS 193
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + D+I+ GR+P+G+CGAAL ++A + + S +IV++V I + T+ KRL
Sbjct: 194 DATRLCRRFDEDFISHGRRPAGICGAALLLAARMNNFRRSVEEIVQVVKIADVTVQKRLD 253
Query: 180 EFENTDSGSLTIEDF 194
EF + +G LTIEDF
Sbjct: 254 EFSRSTAGDLTIEDF 268
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 32/128 (25%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D +D+ E+D + E+E K+ IW E N++YLE+ A +A
Sbjct: 658 DELQGLDESELDDMILGEDEVRVKERIWMEFNKDYLEKIALHQATG-------------- 703
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 458
Q Q+ S + A EA ++L ++++S KIN
Sbjct: 704 ----QDQQKKPRRKKRKAKDQ--------------SAKPENAAEAASQVLKQRKISKKIN 745
Query: 459 YDVLEKLF 466
Y+ L+ LF
Sbjct: 746 YNALDGLF 753
>gi|50287787|ref|XP_446323.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525630|emb|CAG59247.1| unnamed protein product [Candida glabrata]
Length = 598
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 123/195 (63%), Gaps = 7/195 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + +ALNI D IV + ++Y +A+A NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 89 LRAVGHALNI--PDYIVEASHQWYKLALAYNFVQGRRSQNVIAACLYIACRKEMTHHMLI 146
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS+ L ++VY +GA +L++ + L I L DPS+F+ F ++L G K KV
Sbjct: 147 DFSSRLQVSVYSIGATFLKMVKRLQITK----LPLADPSLFIQHFAEKLELGEKKIKVVR 202
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M DW+ GR+P+G+ GA + ++ + L+ + S+IV + H+ E TL +RL
Sbjct: 203 DAVKLAQRMSNDWMFEGRRPAGIAGACILLACRMNNLRRTHSEIVAVSHVAEETLQQRLN 262
Query: 180 EFENTDSGSLTIEDF 194
EF+ T + SL++++F
Sbjct: 263 EFKGTKAASLSVKEF 277
>gi|254580311|ref|XP_002496141.1| ZYRO0C11440p [Zygosaccharomyces rouxii]
gi|238939032|emb|CAR27208.1| ZYRO0C11440p [Zygosaccharomyces rouxii]
Length = 588
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 121/195 (62%), Gaps = 7/195 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + ALNI E I A ++Y +A+ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 90 LRAVSFALNIPEY--ITDAAHQWYKLALHYNFVQGRRSQNVIAACLYIACRKERTHHMLI 147
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS+ L ++VY +GA +L++ + L I L DPS+F+ F ++L G K KV
Sbjct: 148 DFSSRLQVSVYSIGATFLRMVKRLNITK----LPLADPSLFIQHFAEKLDLGDKKIKVAK 203
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M RDW+ GR+P+G+ GA + ++ + L+ + S+IV + H+ E T+ +RL
Sbjct: 204 DAVKLAQRMSRDWMYEGRRPAGIAGACVLLACRMNNLRRTHSEIVAVSHVAEETIQQRLN 263
Query: 180 EFENTDSGSLTIEDF 194
EF+NT +G L+I +F
Sbjct: 264 EFKNTKTGKLSINEF 278
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 387
++ SD ++N D+DD E++ L +EE K+ IW +N EYL EQ +K EA AA
Sbjct: 450 SKVSDDAENLDDVDDDELESQLLDEEASKLKERIWIGINGEYLLEQESKRLKLEADIAAG 509
Query: 388 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 447
+ + N + ++ A + + A+ G TA ++ + M
Sbjct: 510 NTSSKRKRGNRRRKRKTEMDVDQAISTMSSIDDPTSLHSALQAAEQKGDFSTA-DSVKNM 568
Query: 448 LTKKRLSSKINYDVLEKLF 466
L K S KINYD ++ LF
Sbjct: 569 LQKASFSKKINYDAIDGLF 587
>gi|345498426|ref|XP_001607399.2| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Nasonia
vitripennis]
Length = 668
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 112/180 (62%), Gaps = 6/180 (3%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ + FY +A+ R+ T+GR+ A+C+Y+ CR + +LID S+ L I V+ELG
Sbjct: 106 IDTSVNFYKMALNRHLTRGRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRT 165
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITT 135
YL+ Q L I + +DP +++ +F ++L G +V TA ++ MKRD I +
Sbjct: 166 YLRFTQALCIN-----IPSMDPCLYIMRFANKLEFGDKTHEVSMTALRVVQRMKRDSIHS 220
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+PSGLCGAAL ++A H S SDI+KIV + E+TL KRLIEF T S +LT+++FM
Sbjct: 221 GRRPSGLCGAALLMAARLHEFNRSPSDIIKIVKVHESTLRKRLIEFGETPSSALTLDEFM 280
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 35/144 (24%)
Query: 329 DATTEAS-------DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKE 381
DA+ E+S +G + +D+DD E+D Y+ +E+E +K +W ++N +YL
Sbjct: 412 DASKESSALSFENLEGEIDITDLDDEELDSYIMSEKEAQFKSSLWNKVNEKYL------- 464
Query: 382 AAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTAL 441
Q +E +A+ + EK+++R A+ KN PA +A
Sbjct: 465 ---------------------QDQKEKEEKRQKELAEGKPEKKKRRTAKKKNQNPANSAG 503
Query: 442 EATRRMLTKKRLSSKINYDVLEKL 465
EA +ML +KR+S+KINY+VL+ L
Sbjct: 504 EAIEKMLQEKRISTKINYEVLKSL 527
>gi|344303886|gb|EGW34135.1| hypothetical protein SPAPADRAFT_59552, partial [Spathaspora
passalidarum NRRL Y-27907]
Length = 461
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 131/488 (26%), Positives = 215/488 (44%), Gaps = 63/488 (12%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +L I D I A ++ +A+ NF +GRR+ V A+CLY+ACR++ +LI
Sbjct: 15 IRRIAASLQI--PDYIAEAAGEWFRLALTLNFVQGRRSNNVLATCLYVACRKEKTHHMLI 72
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L N KV
Sbjct: 73 DFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFAEKLDFRDKNTKVVK 128
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M DWI GR+P+G+ GA + ++A + + + ++IV + H+ E TL +RL
Sbjct: 129 DAVKLAHRMSADWIHEGRRPAGIAGACVLLAARMNNFRRTHAEIVAVAHVGEETLQRRLN 188
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKH----------KDT 229
EF+ T + LT++ F +KE+ + N K +++ L K+
Sbjct: 189 EFKRTRAAELTVKSFRENEKEIESSNPPSYDKNRAKEKKISKALETDGSLKDFTGLTKEQ 248
Query: 230 GKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM--VKASAEENSSFER--ESD 285
+ L + E+ + ++ L + E ER+ +K + + S +E E
Sbjct: 249 AQNILDNLPKEEQEKQIILNTILTDMSLTKESLTQEMERILNIKKTKLKQSLYETPYELS 308
Query: 286 SPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDID 345
S S +DK+ + PKN E +S+ N D D
Sbjct: 309 SQEESDLDKIW-----RLNWPKNLVKNLPKTEEMLQKV----------SSEVELNSDDDD 353
Query: 346 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 405
D ++ L E E K+ IW +N ++L EQ K Q A
Sbjct: 354 DIVLESKL-TEAEIQIKERIWTGLNHDFLVEQERKRLK-------------------QEA 393
Query: 406 QELAAAAAAAVAKSRKE-------KQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 458
EL +A K R+ K + E G +A +A +K +S K+N
Sbjct: 394 DELTGNTSAQPRKKRQRSVIPPELKGEFSGVELDADGNPTSAKDAAMIYFSKTPVSKKLN 453
Query: 459 YDVLEKLF 466
Y+ L LF
Sbjct: 454 YENLTGLF 461
>gi|323337428|gb|EGA78678.1| Brf1p [Saccharomyces cerevisiae Vin13]
Length = 584
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVA 206
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 380
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESK 501
>gi|68072423|ref|XP_678125.1| transcription factor IIIb subunit [Plasmodium berghei strain ANKA]
gi|56498490|emb|CAH96336.1| transcription factor IIIb subunit, putative [Plasmodium berghei]
Length = 728
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 115/189 (60%), Gaps = 7/189 (3%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A N+ S + + A+R Y +A+ RNFT GR V ASCLY CR++ P +LIDFS+ L
Sbjct: 88 ADNLHLSTQHIEAAQRIYLMALQRNFTMGRNNSYVAASCLYTICRREKSPIMLIDFSDIL 147
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDIL 125
LG +L+L ++L+I+ + +DPS+FL +F +L L KV T ++
Sbjct: 148 QT-PKPLGKTFLKLLRLLHIS-----VPNIDPSLFLERFAYKLNLKNDIYKVTYTGIKLI 201
Query: 126 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 185
+M RDWI+TGR+P+GLCGA+L ++ HG+ + + I ++V I T++KRL EF+NT+
Sbjct: 202 QAMTRDWISTGRRPTGLCGASLLIATRIHGININSNTIAEVVRISNPTIIKRLYEFKNTN 261
Query: 186 SGSLTIEDF 194
+ +F
Sbjct: 262 IAKIKASEF 270
>gi|6321685|ref|NP_011762.1| Brf1p [Saccharomyces cerevisiae S288c]
gi|135646|sp|P29056.1|TF3B_YEAST RecName: Full=Transcription factor IIIB 70 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1
gi|172897|gb|AAB04945.1| transcription factor III B component [Saccharomyces cerevisiae]
gi|172905|gb|AAA35148.1| transcription factor IIIB [Saccharomyces cerevisiae]
gi|258516|gb|AAB23865.1| RNA polymerase III transcription factor 4, PCF4, pol III
transcription initiation factor 4=TFIIB homolog
[Saccharomyces cerevisiae, Peptide, 596 aa]
gi|1323446|emb|CAA97275.1| BRF1 [Saccharomyces cerevisiae]
gi|1702956|emb|CAA68968.1| BRF1 [Saccharomyces cerevisiae]
gi|285812437|tpg|DAA08337.1| TPA: Brf1p [Saccharomyces cerevisiae S288c]
gi|392299501|gb|EIW10595.1| Brf1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 596
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVA 206
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 387
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 388 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 442
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 443 ATRRMLTKKRLSSKINYDVLEKLF 466
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>gi|323348488|gb|EGA82733.1| Brf1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 596
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVA 206
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 387
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 388 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 442
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 443 ATRRMLTKKRLSSKINYDVLEKLF 466
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>gi|365765493|gb|EHN07001.1| Brf1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 596
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVA 206
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 387
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 388 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 442
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 443 ATRRMLTKKRLSSKINYDVLEKLF 466
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>gi|207344925|gb|EDZ71907.1| YGR246Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 596
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVA 206
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 387
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 388 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 442
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 443 ATRRMLTKKRLSSKINYDVLEKLF 466
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>gi|151943520|gb|EDN61831.1| transcription factor TFIIIB subunit [Saccharomyces cerevisiae
YJM789]
gi|256272646|gb|EEU07623.1| Brf1p [Saccharomyces cerevisiae JAY291]
gi|259146747|emb|CAY80004.1| Brf1p [Saccharomyces cerevisiae EC1118]
gi|323354892|gb|EGA86725.1| Brf1p [Saccharomyces cerevisiae VL3]
Length = 596
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVA 206
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 387
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 388 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 442
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 443 ATRRMLTKKRLSSKINYDVLEKLF 466
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>gi|190406748|gb|EDV10015.1| RNA polymerase III transcription factor [Saccharomyces cerevisiae
RM11-1a]
Length = 596
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVA 206
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 387
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 388 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 442
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 443 ATRRMLTKKRLSSKINYDVLEKLF 466
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>gi|331244858|ref|XP_003335068.1| hypothetical protein PGTG_16675 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309314058|gb|EFP90649.1| hypothetical protein PGTG_16675 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 635
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 119/192 (61%), Gaps = 7/192 (3%)
Query: 4 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 63
M +AL +G D I A RF+ +AV+ F GRR+ V ASC+Y+ACR P +LID S
Sbjct: 96 MAHALRLG--DSIAESAHRFFTLAVSNGFVMGRRSPYVLASCIYVACRLAKLPTMLIDIS 153
Query: 64 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTAR 122
+ L +NV+ +GA YL+L + L + + + VDPS+++ +F L G + +KV A
Sbjct: 154 DLLQVNVFIVGATYLKLVKELCLQN----IPLVDPSLYISRFASLLEFGEDTQKVAYDAA 209
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
++ DW+T GR+P+G+ GA+L ++A +G + S +IV++V + + T+ KRL EF
Sbjct: 210 RLVKRFDTDWMTAGRRPAGIAGASLLIAARMNGFRRSVLEIVQVVKMADVTIKKRLEEFR 269
Query: 183 NTDSGSLTIEDF 194
T SG +T+E+F
Sbjct: 270 VTASGKMTVEEF 281
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 30/117 (25%)
Query: 352 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 411
++ N++E K +W E+NREYLE+ A K+ A + + Y
Sbjct: 454 FILNDKEVEMKTRVWMELNREYLEKVALKKEREANGELKVAKKYN--------------- 498
Query: 412 AAAAVAKSRKEKQQKRAAEAKNSGPAQ-TALEATRRML-TKKRLSSKINYDVLEKLF 466
+ K + R +E PA T E+ + M+ +KK+LSSKINY + + LF
Sbjct: 499 ---------RTKSKPRDSE----NPAGLTVEESVKNMINSKKKLSSKINYAIADSLF 542
>gi|349578449|dbj|GAA23615.1| K7_Brf1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 596
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVA 206
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 387
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 388 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 442
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRNDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 443 ATRRMLTKKRLSSKINYDVLEKLF 466
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>gi|325090389|gb|EGC43699.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
capsulatus H88]
Length = 837
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 142 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 199
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 200 FADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGSSMMQVASE 259
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 260 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTIREVVYVVKVTELTIHQRLNE 319
Query: 181 FENTDSGSLTIEDF 194
F+ T+SG LT++ F
Sbjct: 320 FKATESGDLTVDQF 333
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 437 AQTALEATRRMLTKKRLSSKINYDVLEKLFDD 468
A T EATRRML ++ S KINY +LE++++D
Sbjct: 603 ASTPAEATRRMLEQRGFSKKINYRLLEEMYED 634
>gi|323304747|gb|EGA58507.1| Brf1p [Saccharomyces cerevisiae FostersB]
Length = 523
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVA 206
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 326 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 384
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 385 AAAKAALEASYK 396
A A S K
Sbjct: 506 EADIATGNTSVK 517
>gi|323308921|gb|EGA62153.1| Brf1p [Saccharomyces cerevisiae FostersO]
Length = 523
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVA 206
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 326 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK---- 380
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 381 EAAAAAAKAALE 392
EA A ++E
Sbjct: 506 EADIATGNTSVE 517
>gi|154276374|ref|XP_001539032.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414105|gb|EDN09470.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 818
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 142 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 199
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 200 FADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGSSMMQVASE 259
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 260 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTIREVVYVVKVTELTIHQRLKE 319
Query: 181 FENTDSGSLTIEDF 194
F+ T+SG LT++ F
Sbjct: 320 FKATESGDLTVDQF 333
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 439 TALEATRRMLTKKRLSSKINYDVLEKLFDD 468
T EATRRML ++ S KINY +LE++++D
Sbjct: 603 TPAEATRRMLEQRGFSKKINYRLLEEMYED 632
>gi|225560369|gb|EEH08651.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
capsulatus G186AR]
Length = 832
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 142 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 199
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 200 FADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGSSMMQVASE 259
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 260 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTIREVVYVVKVTELTIHQRLNE 319
Query: 181 FENTDSGSLTIEDF 194
F+ T+SG LT++ F
Sbjct: 320 FKATESGDLTVDQF 333
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 437 AQTALEATRRMLTKKRLSSKINYDVLEKLFDD 468
A T EATRRML ++ S KINY +LE++++D
Sbjct: 603 ASTPAEATRRMLEQRGFSKKINYRLLEEMYED 634
>gi|413952557|gb|AFW85206.1| hypothetical protein ZEAMMB73_014139 [Zea mays]
Length = 350
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/121 (61%), Positives = 92/121 (76%), Gaps = 8/121 (6%)
Query: 109 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 168
LL N V DTA I+ASMKRDW+ T RKPSGLCGAALY++AL+HG ++K+DIV +VH
Sbjct: 141 LLGRRNNDVSDTALRIVASMKRDWMQTRRKPSGLCGAALYIAALSHGCNYTKADIVSVVH 200
Query: 169 ICEATLMKRLIEFENTDSGSLTIEDFMARKKELH-EGVAANLPNNGPKVSGMNEVLCKHK 227
+CEATL KRLIEFENTDSGSLTIE+F+A E + E V+ +LP +G E+LCKHK
Sbjct: 201 VCEATLTKRLIEFENTDSGSLTIEEFLATADESNEEPVSKHLPKSG-------EILCKHK 253
Query: 228 D 228
+
Sbjct: 254 E 254
>gi|385304224|gb|EIF48251.1| brf1p [Dekkera bruxellensis AWRI1499]
Length = 420
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 132/211 (62%), Gaps = 11/211 (5%)
Query: 2 RQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+++KN A +G D I A +++ +A+ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 93 KRIKNVASALGIQDYISDAAYQWFQLALTNNFVQGRRSQNVVAACLYIACRKEKTHHMLI 152
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS+ L ++V+ +GA +L++ + L+I D L +DPS+F+ F D+L G K KV +
Sbjct: 153 DFSSRLQVSVFAVGATFLKMVKALHITD----LPLIDPSLFIQHFADKLDFGRAKLKVIN 208
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M +W+ GR+PSG+ GA + ++A + + S+IV + H+ +T+ KRL
Sbjct: 209 DALKLARRMDDNWLYEGRRPSGIAGACILLAARMNNFHRTHSEIVAVSHVGXSTIQKRLW 268
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVAANLP 210
EF+ T S +L+IE F RK +E V A+LP
Sbjct: 269 EFQKTYSSNLSIEKF--RK---NEKVRASLP 294
>gi|240278695|gb|EER42201.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
capsulatus H143]
Length = 774
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 120/200 (60%), Gaps = 4/200 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 142 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 199
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 200 FADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGSSMMQVASE 259
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 260 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTIREVVYVVKVTELTIHQRLNE 319
Query: 181 FENTDSGSLTIEDFMARKKE 200
F+ T+SG LT++ F + + E
Sbjct: 320 FKATESGDLTVDQFRSVQLE 339
>gi|291000995|ref|XP_002683064.1| transcription factor [Naegleria gruberi]
gi|284096693|gb|EFC50320.1| transcription factor [Naegleria gruberi]
Length = 654
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 186/406 (45%), Gaps = 72/406 (17%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
V A Y +A+ + TK R + V A+CLY RQ +P++L+DFS + +V+ +G
Sbjct: 124 VDRATNTYKLALLKGSTKARNPDIVAAACLYFVLRQDKQPYMLMDFSESMKTDVFLIGHC 183
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK---------KVCDTARDILAS 127
+L L L L V+P ++ +F +RLL K +V T ++AS
Sbjct: 184 FLDLMTALNFK-----LPAVEPFFYVRRFANRLLLNSGKENANQEAINRVIQTTLKLIAS 238
Query: 128 MKRDWITTGRKPSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIEFENTDS 186
MKR+WI TGR+P+G+C AAL V+A HG K SK D+VK+V IC ATL KRL+EF+ T++
Sbjct: 239 MKRNWIQTGRRPAGICAAALLVAARIHGFKNISKQDVVKVVKICTATLTKRLMEFDKTET 298
Query: 187 GSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLC----RSCY 242
L+ E+F R++E+ NNG + D P A
Sbjct: 299 AQLSPEEFERREQEI---------NNGSFQGTI--------DVSDPPAYSRSLKEKSKLM 341
Query: 243 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPES 302
E + + LE G D V E E++++ E S E E ++R ++Q E +S
Sbjct: 342 ERYEPEQKDLERGTDVNDQDVEEAEKLIQDKEIEEISTELEKGDQ-LARAQRLQ--ESQS 398
Query: 303 IGVPKNCT--------------TQTASNEGEGD----------HTKTPGVDATTEASDGS 338
+P TQ S+E E D H+K + T + +
Sbjct: 399 KPIPDTTLPSSSLPSASQDVRQTQIKSSEFEDDESISYEESNNHSKISIENQTEQQNQIE 458
Query: 339 DNFSD----IDDFEVDGYLHNEEEKHY-----KKIIWEEMNREYLE 375
++ + + DFE D + ++ +W+E++ EYL+
Sbjct: 459 EDEEEEIDTLSDFEDDSEIEEIVITEESEIEGREKLWDELHLEYLQ 504
>gi|323333395|gb|EGA74791.1| Brf1p [Saccharomyces cerevisiae AWRI796]
Length = 404
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVA 206
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
>gi|68487944|ref|XP_712189.1| transcription factor BRF of TFIIIB complex [Candida albicans
SC5314]
gi|68488941|ref|XP_711715.1| transcription factor BRF of TFIIIB complex [Candida albicans
SC5314]
gi|1174644|sp|P43072.1|TF3B_CANAL RecName: Full=Transcription factor IIIB 70 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1
gi|619452|emb|CAA87398.1| TFIIB related subunit of TFIIIB (BRF1) [Candida albicans]
gi|46433036|gb|EAK92493.1| transcription factor BRF of TFIIIB complex [Candida albicans
SC5314]
gi|46433560|gb|EAK92996.1| transcription factor BRF of TFIIIB complex [Candida albicans
SC5314]
gi|238880004|gb|EEQ43642.1| hypothetical protein CAWG_01886 [Candida albicans WO-1]
Length = 553
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 134/508 (26%), Positives = 226/508 (44%), Gaps = 97/508 (19%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++++ AL I D I A ++ +A+ NF +GRR+ V A+CLY+ACR++ +LI
Sbjct: 95 IKRIAAALKI--PDYIAEAAGEWFRLALTLNFVQGRRSNNVLATCLYVACRKERTHHMLI 152
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L KV
Sbjct: 153 DFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFKDKATKVAK 208
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M DWI GR+P+G+ GA + ++A + + S ++IV + H+ E TL +RL
Sbjct: 209 DAVKLAHRMAADWIHEGRRPAGIAGACVLLAARMNNFRRSHAEIVAVSHVGEETLQRRLN 268
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMN---------------EVLC 224
EF+ T +G+L+++ F +E+ E + ++ P + K M E L
Sbjct: 269 EFKKTKAGTLSVKSF----REV-ENLESSNPPSFEKNRAMELKISKKLQQQQTDNFEDLS 323
Query: 225 KHKDTGKPFACG-----------LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKAS 273
K + K G L + + +E L D R +K S
Sbjct: 324 KMTEEEKQSVFGKLSKEEAQKQLLMNTILSDITITTENLNDQMD--------RILKMKKS 375
Query: 274 AEENSSFERESDSPFMSRVDKVQSPEPE---SIGVPKNCTTQTASNEGEGDHTKTPGVDA 330
+ ENS ++ +P+ + +P +I PKN P D
Sbjct: 376 SLENSLYK----TPYELALANGSEQDPSKIWNINKPKNLVAN------------LPKTDD 419
Query: 331 TTE--ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 388
+ +S+ N D D+ ++ L EEE K+ IW +N +YL EQ K
Sbjct: 420 ILQNVSSEVELNSDDDDEIVLESKL-TEEEVAIKERIWTGLNHDYLVEQEKKRLK----- 473
Query: 389 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKR-AAEAKN---------SGPAQ 438
Q A EL + + + +R+++ + AE + G +
Sbjct: 474 --------------QEADELTGNTSKSSSGNRRKRNKSSLPAELRKELGDIDLDEDGTPR 519
Query: 439 TALEATRRMLTKKRLSSKINYDVLEKLF 466
+A ++ + ++K +S KINYD L+ L
Sbjct: 520 SAADSAKMYISKTSVSKKINYDSLKGLL 547
>gi|299117182|emb|CBN75146.1| similar to TFIIB related factor hBRF [Ectocarpus siliculosus]
Length = 990
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 113/176 (64%), Gaps = 4/176 (2%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R + + V +N+ +GR+T + A+C+Y+ CRQ P +LID S+ L +NVY LG + +
Sbjct: 128 AARLFALCVTQNYVQGRKTMNIVAACVYIVCRQNHFPIMLIDISDKLAVNVYVLGKTFQK 187
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRK 138
L + L + + + VDP++++ +F +L L VC TA I+ SMKRD++ +GR+
Sbjct: 188 LIKHLNLQTQVPI---VDPAMYIKRFAAKLDLGSKTNAVCMTALKIIGSMKRDFLASGRQ 244
Query: 139 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
P+G+C AAL ++ + ++ SK +I K V +C+AT+ KRL+EFE T + LT+E+
Sbjct: 245 PAGICCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEEL 300
>gi|448100207|ref|XP_004199299.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
gi|359380721|emb|CCE82962.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
Length = 571
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 122/211 (57%), Gaps = 11/211 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++++ AL I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 92 IKKIATALRI--PDYISDAASEWFRLALLNNFVQGRRSQNVLAACLYVACRKEKTHHMLI 149
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L I+VY LGA +L++ + L I L DPS+F+ F ++L KV
Sbjct: 150 DFSSRLQISVYSLGATFLKMVKALQITK----LPLADPSLFIQHFVEKLGFRESTSKVIK 205
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M DWI GR+P+G+ GA + ++A + + + ++IV + H+ E TL +RL
Sbjct: 206 DAVKLAQRMANDWIHEGRRPAGIAGACVLLAARMNNFRRTHAEIVAVAHVAEETLQRRLN 265
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVAANLP 210
EF+ T SG LT+E F ++ H +N P
Sbjct: 266 EFKKTKSGELTVESF----RQSHRTEISNPP 292
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 39/161 (24%)
Query: 329 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 388
D ++ S +F D+D+ E+D +L ++E K+ +W +N ++L Q K
Sbjct: 422 DLLSKISSNPKDFEDLDEEELDQFLLTDDEYKLKERVWTGLNHDFLVNQEKKRLK----- 476
Query: 389 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQ--------------------QKRA 428
Q A EL + A K R++ + + A
Sbjct: 477 --------------QEADELTGNTSGATRKKRRQNKSPLDGIEGIGGDIVSEMGVCEAIA 522
Query: 429 AEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 469
+++G +A ++ RRML+KK S KINY L LFDD+
Sbjct: 523 GIGESAGEPLSAADSARRMLSKKAFSKKINYASLGDLFDDN 563
>gi|195056023|ref|XP_001994912.1| GH17498 [Drosophila grimshawi]
gi|193892675|gb|EDV91541.1| GH17498 [Drosophila grimshawi]
Length = 667
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 109/178 (61%), Gaps = 6/178 (3%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
A F+ +A+ R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALHRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 137
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
+P+GLCGAAL ++A H + +D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHEFSRTLADVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFM 282
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 29/125 (23%)
Query: 341 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 400
D++D E+D Y+ E+E K +W+ +N E+L EQ +E
Sbjct: 435 IDDLNDEELDQYVLTEQEADTKLDMWKNLNAEFLREQQERE------------------- 475
Query: 401 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 460
+ LA + +K K +K+ GP+ TA EA +ML +K++SSKINYD
Sbjct: 476 -----ERLAKEREEGKPEKKKRKPRKKVI-----GPSSTAGEAIEKMLQEKKISSKINYD 525
Query: 461 VLEKL 465
+L+ L
Sbjct: 526 ILKTL 530
>gi|448103917|ref|XP_004200158.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
gi|359381580|emb|CCE82039.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
Length = 570
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 116/195 (59%), Gaps = 7/195 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++++ AL I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 92 IKKIATALRI--PDYISDAASEWFRLALLNNFVQGRRSQNVLAACLYVACRKEKTHHMLI 149
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L I+VY LGA +L++ + L I L DPS+F+ F ++L KV
Sbjct: 150 DFSSRLQISVYSLGATFLKMVKALQITK----LPLADPSLFIQHFVEKLDFRESTSKVIK 205
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M DWI GR+P+G+ GA + ++A + + + ++IV + H+ E TL +RL
Sbjct: 206 DAVKLAQRMANDWIHEGRRPAGIAGACVLLAARMNNFRRTHAEIVAVAHVAEETLQRRLN 265
Query: 180 EFENTDSGSLTIEDF 194
EF+ T SG LT+E F
Sbjct: 266 EFKKTKSGELTVESF 280
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 38/160 (23%)
Query: 329 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 388
D ++ S +F D+DD E+D +L E+E K+ +W +N ++L Q K
Sbjct: 422 DLLSKISSDPKDFEDLDDEELDQFLLTEDEYKLKERVWTGLNHDFLVNQEKKRLK----- 476
Query: 389 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQ-------------------QKRAA 429
Q A EL + A K R++ + + A
Sbjct: 477 --------------QEADELTGNTSGATRKKRRQNKSPLDNIEGIGGDIVSEMGVSEAIA 522
Query: 430 EAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 469
SG +A ++ RRML+KK S KINY L LFDD+
Sbjct: 523 GIGESGEPLSAADSARRMLSKKAFSKKINYASLGDLFDDN 562
>gi|149238860|ref|XP_001525306.1| hypothetical protein LELG_03234 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450799|gb|EDK45055.1| hypothetical protein LELG_03234 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 550
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 117/195 (60%), Gaps = 7/195 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ AL I +D I A ++ +A+ NF +GRR+ V A+CLY+ACR++ +LI
Sbjct: 95 IRRLAAALKI--ADFIADAAGEWFKLALTMNFVQGRRSNNVLATCLYVACRKERTHHMLI 152
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 119
DFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L G KV
Sbjct: 153 DFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFGDKTTKVAK 208
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M DWI GR+P+G+ GA + ++A + + S S+IV I H+ E TL +RL
Sbjct: 209 DAVKLAHRMSADWIHEGRRPAGIAGACVLLAARMNNFRRSHSEIVAISHVGEETLQRRLN 268
Query: 180 EFENTDSGSLTIEDF 194
EF+ T + L++E F
Sbjct: 269 EFKKTKAAQLSVESF 283
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 29/137 (21%)
Query: 342 SDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEG 401
SD DD V+ EE K+ IW +N +Y+ EQ K
Sbjct: 431 SDDDDAIVEESQMTPEEVAMKERIWTSLNHDYMIEQERKRLK------------------ 472
Query: 402 LQAAQELAAAAAAAVAKSRKEKQ--------QKRAAEA--KNSGPAQTALEATRRMLTKK 451
Q A EL +A+ R++K QK + G ++A ++T+ L++
Sbjct: 473 -QEADELTGNTSASNGGPRRKKPRNSVPPELQKEIGDIVLDEDGTPRSAADSTKMFLSRT 531
Query: 452 RLSSKINYDVLEKLFDD 468
+S KINY+ L+ LF D
Sbjct: 532 SVSKKINYESLQGLFGD 548
>gi|195501939|ref|XP_002098010.1| GE24172 [Drosophila yakuba]
gi|194184111|gb|EDW97722.1| GE24172 [Drosophila yakuba]
Length = 666
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 109/179 (60%), Gaps = 6/179 (3%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
A F+ +A++R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALSRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 137
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 196
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFMT 283
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 35/128 (27%)
Query: 343 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 402
D++D E+D Y+ E+E K +W+ +N EYL+EQ ++
Sbjct: 438 DLNDDELDQYVLTEDEAVAKLEMWKNLNAEYLQEQKERDER------------------- 478
Query: 403 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINY 459
+AK R+E + +R GP+ TA EA +ML +K++SSKINY
Sbjct: 479 -------------LAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINY 525
Query: 460 DVLEKLFD 467
++L+ L D
Sbjct: 526 EILKTLTD 533
>gi|406603760|emb|CCH44785.1| Transcription factor IIIB subunit [Wickerhamomyces ciferrii]
Length = 559
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 121/195 (62%), Gaps = 7/195 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + AL I E + A +++ +A++ NF KGR+++ V A+CLY++CR++ +LI
Sbjct: 94 IRAVATALKIPEY--VSDAAYQWFSLALSNNFVKGRKSQNVIAACLYISCRKEKTHHMLI 151
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS L I+VY +GA +L++ + L+I L DPS+F+ F ++L G ++ K+
Sbjct: 152 DFSARLQISVYSVGATFLKMVKALHITK----LPLADPSLFIQHFAEKLDFGDDRVKIVK 207
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M DWI GR+P+G+ GA L ++A + + + +IV + H+ E TL +RL
Sbjct: 208 DAVKLAQRMSEDWIHEGRRPAGVAGACLLLAARMNNHRRTHGEIVAVAHVGEDTLQRRLN 267
Query: 180 EFENTDSGSLTIEDF 194
EF+ T +GSLTI++F
Sbjct: 268 EFKETHAGSLTIKEF 282
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 50/129 (38%), Gaps = 33/129 (25%)
Query: 349 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQEL 408
+D +L EEE K+ +W +N EYL EQ K A A E S P
Sbjct: 454 LDNFLLTEEESKLKERVWVGLNEEYLLEQEQKRLKAEAD----EISGHQQP--------- 500
Query: 409 AAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALE----------ATRRMLTKKRLSSKIN 458
K RK+ K + N Q A+ A R +LTKK S KIN
Sbjct: 501 ---------KKRKKPNTKNEDDPLNDDNVQNAINKIGEGNSVSAAARSVLTKK-ASKKIN 550
Query: 459 YDVLEKLFD 467
Y L LF+
Sbjct: 551 YMALNNLFE 559
>gi|393904948|gb|EFO21323.2| BRF1 protein [Loa loa]
Length = 859
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 137/472 (29%), Positives = 220/472 (46%), Gaps = 70/472 (14%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
V+ A F+ + V+RNFT+GR V A+CLY+ CR ++ LL+DFS+ +NV++LG
Sbjct: 104 VNTAFNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLENTAHLLLDFSDITQVNVFDLGRT 163
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITT 135
L + L I L DP +++ +F L G +K V A ++ MKRDWI T
Sbjct: 164 LNFLTRSLKIN-----LPTTDPCMYILRFAVSLDFGTKQKEVVSLATRLVQRMKRDWIAT 218
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+P+GLCGAAL ++A + + +D+V++VHI EA + KRL EF T S +LTI++F
Sbjct: 219 GRRPTGLCGAALLLAARCYNFNRTVADVVRVVHISEAVVKKRLDEFGQTPSSTLTIDEFT 278
Query: 196 ARKKELHEGVAANLPNNGP----KVSGMNEVLCKHKDTGKPFACGLCRSC---------- 241
+ E E A + ++ E L K + P + R+
Sbjct: 279 SVDLEHCEDPPAFRESRRKARELQLQKEEEALRKIELEMSPMEAEVERALEKRRKERFKR 338
Query: 242 --YEEFMTISEGLEGGADPPAFQVAERE--RMVKASAEENSSFERESDSPFMSRVDKVQS 297
Y + M+ S G E PA V E +V ++A + SD+ S +
Sbjct: 339 TQYAQMMSGSLGSESDELTPADAVVRNEIVDLVFSAARSTTPL---SDAGMSS----TYA 391
Query: 298 PEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSD--NFSDIDDFEVDGYLHN 355
P S+G+ NE E P ++ ++E + ++ + IDD E+D Y+
Sbjct: 392 PSLVSLGI------TPIKNEVE------PIIETSSEKLNSNEELDLEGIDDEEIDTYILT 439
Query: 356 EEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAA 415
EEE K W ++N E+L+E + + + S
Sbjct: 440 EEEVDLKTRFWMKLNGEHLKEMERRRREREEEEREKDNSI-------------------- 479
Query: 416 VAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 467
K++++ K A TA EA +++ +K+LS+KINYD+L ++ D
Sbjct: 480 -----KKRRRTNGIRKKEPIVAATAQEAMEKVIHEKKLSNKINYDILREIED 526
>gi|300121033|emb|CBK21415.2| unnamed protein product [Blastocystis hominis]
Length = 592
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 121/195 (62%), Gaps = 9/195 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ Q+ LN+ ++ A + +AVA+NFT+GR+ V A+CLY+ACR P +LI
Sbjct: 96 ISQIAAGLNL---QNLISNACNVFNLAVAKNFTQGRKATHVCAACLYVACRMNKIPTMLI 152
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCD 119
DF++ L +V+ LG+VY+++ +L + +K +DPS+++++F ++ G VC
Sbjct: 153 DFADLLQTDVWSLGSVYMKMNNMLGLK-----MKPIDPSLYINRFASQMEFGDQLSAVCL 207
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA I M+RDWI GR+P G+ AAL ++A HG + +K DI+ IV + E TL RL
Sbjct: 208 TALRITKRMQRDWIVLGRRPLGIVAAALLLAARIHGFRRTKKDILSIVKVSEETLRIRLA 267
Query: 180 EFENTDSGSLTIEDF 194
EFE+T S SLTI+ F
Sbjct: 268 EFESTPSSSLTIDQF 282
>gi|312080782|ref|XP_003142747.1| BRF1 protein [Loa loa]
Length = 866
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 137/472 (29%), Positives = 220/472 (46%), Gaps = 70/472 (14%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
V+ A F+ + V+RNFT+GR V A+CLY+ CR ++ LL+DFS+ +NV++LG
Sbjct: 104 VNTAFNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLENTAHLLLDFSDITQVNVFDLGRT 163
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITT 135
L + L I L DP +++ +F L G +K V A ++ MKRDWI T
Sbjct: 164 LNFLTRSLKIN-----LPTTDPCMYILRFAVSLDFGTKQKEVVSLATRLVQRMKRDWIAT 218
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+P+GLCGAAL ++A + + +D+V++VHI EA + KRL EF T S +LTI++F
Sbjct: 219 GRRPTGLCGAALLLAARCYNFNRTVADVVRVVHISEAVVKKRLDEFGQTPSSTLTIDEFT 278
Query: 196 ARKKELHEGVAANLPNNGP----KVSGMNEVLCKHKDTGKPFACGLCRSC---------- 241
+ E E A + ++ E L K + P + R+
Sbjct: 279 SVDLEHCEDPPAFRESRRKARELQLQKEEEALRKIELEMSPMEAEVERALEKRRKERFKR 338
Query: 242 --YEEFMTISEGLEGGADPPAFQVAERE--RMVKASAEENSSFERESDSPFMSRVDKVQS 297
Y + M+ S G E PA V E +V ++A + SD+ S +
Sbjct: 339 TQYAQMMSGSLGSESDELTPADAVVRNEIVDLVFSAARSTTPL---SDAGMSS----TYA 391
Query: 298 PEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSD--NFSDIDDFEVDGYLHN 355
P S+G+ NE E P ++ ++E + ++ + IDD E+D Y+
Sbjct: 392 PSLVSLGI------TPIKNEVE------PIIETSSEKLNSNEELDLEGIDDEEIDTYILT 439
Query: 356 EEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAA 415
EEE K W ++N E+L+E + + + S
Sbjct: 440 EEEVDLKTRFWMKLNGEHLKEMERRRREREEEEREKDNSI-------------------- 479
Query: 416 VAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 467
K++++ K A TA EA +++ +K+LS+KINYD+L ++ D
Sbjct: 480 -----KKRRRTNGIRKKEPIVAATAQEAMEKVIHEKKLSNKINYDILREIED 526
>gi|448527192|ref|XP_003869453.1| Brf1 component of the general transcription factor for RNA
polymerase III (TFIIIB) [Candida orthopsilosis Co
90-125]
gi|380353806|emb|CCG23318.1| Brf1 component of the general transcription factor for RNA
polymerase III (TFIIIB) [Candida orthopsilosis]
Length = 552
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 116/195 (59%), Gaps = 7/195 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ AL I D I A ++ +A+ NF +GRR+ V A+CLY+ACR++ P +LI
Sbjct: 96 IRRIAAALKI--PDFIAEAAGEWFKLALTMNFVQGRRSNNVLATCLYVACRKEKTPHMLI 153
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L KV
Sbjct: 154 DFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFKDKATKVAR 209
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M DWI GR+P+G+ GA + ++A + + S S+IV I H+ + TL +RL
Sbjct: 210 DATKLAQRMSADWIHEGRRPAGVAGACVLLAARMNNFRRSHSEIVAISHVGQETLQRRLN 269
Query: 180 EFENTDSGSLTIEDF 194
EF+ T + L+++ F
Sbjct: 270 EFKKTKAAQLSVQRF 284
>gi|354546095|emb|CCE42824.1| hypothetical protein CPAR2_204670 [Candida parapsilosis]
Length = 552
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 116/195 (59%), Gaps = 7/195 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ AL I D I A ++ +A+ NF +GRR+ V A+CLY+ACR++ P +LI
Sbjct: 96 IRRIAAALRI--PDFIAEAAGEWFKLALTMNFVQGRRSNNVLATCLYVACRKEKTPHMLI 153
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L KV
Sbjct: 154 DFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFKEKATKVAR 209
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M DWI GR+P+G+ GA + ++A + + S S+IV I H+ + TL +RL
Sbjct: 210 DATKLAQRMSADWIHEGRRPAGVAGACVLLAARMNNFRRSHSEIVAISHVGQETLQRRLN 269
Query: 180 EFENTDSGSLTIEDF 194
EF+ T + L+++ F
Sbjct: 270 EFKKTKAAQLSVKSF 284
>gi|268562683|ref|XP_002646739.1| C. briggsae CBR-BRF-1 protein [Caenorhabditis briggsae]
Length = 751
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 132/475 (27%), Positives = 212/475 (44%), Gaps = 95/475 (20%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
++ A F+ + V+RN T+GR V A CLY+ CR ++ LL+DFS+ INV++LG
Sbjct: 102 MNTAFNFFKMCVSRNLTRGRNRASVVAVCLYITCRLENTAHLLLDFSDVTQINVFDLGRN 161
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITT 135
+ + L I L DP +++ +F L G +K V A ++ MKRDW++T
Sbjct: 162 LNFISRSLRIN-----LPATDPCLYIIRFACVLDFGDKQKEVVTLATRLVQRMKRDWMST 216
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+P+G+CGAAL ++A + + +DIV++VHI E+ + KRL EF T SGSLTI++F
Sbjct: 217 GRRPTGICGAALLIAARSMNFNRTINDIVRVVHISESVIRKRLDEFSQTPSGSLTIDEFS 276
Query: 196 ---------------ARKKELHEGVAANLPNNGPKVSGMNEVLCK---HKDTG--KPFAC 235
AR+K E L + M+ L + H + K
Sbjct: 277 NVDLEHSEDPPAYREARRKAREE----QLKKEAEQAESMSYQLGEMEAHVEAALDKKRKE 332
Query: 236 GLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSF-----ERESDSPFMS 290
+S Y + ++ GLE GAD ++ E + NS F E S +
Sbjct: 333 KFSKSPYAKLISEGLGLEKGAD----EMVRNEIL-------NSVFDAVEEEEPCSSNSLE 381
Query: 291 RVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVD 350
+ DK + P ES+G+ + A + E + VD D +I D E+D
Sbjct: 382 KYDKYR-PSLESLGI------KPAETQEELPRISSIPVD---------DVDIEISDSEID 425
Query: 351 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 410
Y+ E E K W + N E + K + +K + + + +
Sbjct: 426 SYILTESEVAIKTDYWMKANGEVM-----KAIEERKREREENGDFKRKRKSTKKTETVCT 480
Query: 411 AAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
+AA+AV K ++ +K+LS+K+NY++L+ L
Sbjct: 481 SAASAVEK----------------------------VIAEKKLSNKVNYEMLKDL 507
>gi|195110647|ref|XP_001999891.1| GI22827 [Drosophila mojavensis]
gi|193916485|gb|EDW15352.1| GI22827 [Drosophila mojavensis]
Length = 671
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 109/178 (61%), Gaps = 6/178 (3%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
A F+ +A+ R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALHRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGR 137
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSVDPCLYIMRFANRLQLGPKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
+P+GLCGAAL ++A H + +D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHEFSRTIADVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFM 282
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 29/132 (21%)
Query: 341 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 400
D++D E+D Y+ EE K +W+ +N E+L EQ +E A + + K
Sbjct: 443 IDDLNDEELDQYVLTAEEADTKLSMWKNLNAEFLREQKEREERMAKEREEGKPEKKKRKP 502
Query: 401 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 460
+ GP+ TA EA +ML +K++SSKINYD
Sbjct: 503 RKKVI-----------------------------GPSSTAGEAIEKMLQEKKISSKINYD 533
Query: 461 VLEKLFDDSVCL 472
+L+ L + CL
Sbjct: 534 ILKTLTEGMGCL 545
>gi|389585362|dbj|GAB68093.1| transcription factor IIIb subunit [Plasmodium cynomolgi strain B]
Length = 820
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 132/246 (53%), Gaps = 13/246 (5%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
S + V A+R Y +A+ RNFT GR V ASCLY CR++ P +LIDFS+ L V
Sbjct: 99 STQHVEAAQRIYLMALQRNFTMGRNNSYVAASCLYTICRREKSPVMLIDFSDILQTPVKP 158
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRD 131
LG +L+L ++L+++ + +DPS++L +F +L L KV T ++ +M RD
Sbjct: 159 LGKTFLKLLRLLHLS-----VPNIDPSLYLERFAHKLNLKNAIYKVTYTGIKLIQAMTRD 213
Query: 132 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 191
WI TGR+P+GLCGAAL +S HG+ + I IV I T++KRL EF+NT + + +
Sbjct: 214 WICTGRRPTGLCGAALLISTRMHGIFVHSNTIANIVRISNPTIIKRLSEFKNTSTAKMKV 273
Query: 192 EDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEG 251
DF + L++ + +LP P V N K LC S EE +
Sbjct: 274 SDF--DRIHLNDMPSNSLP---PCVIASNRKKLKQDMLKNNQTVSLCDS--EEIFSTVRS 326
Query: 252 LEGGAD 257
+ G D
Sbjct: 327 AKSGKD 332
>gi|195570167|ref|XP_002103080.1| GD20238 [Drosophila simulans]
gi|194199007|gb|EDX12583.1| GD20238 [Drosophila simulans]
Length = 662
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 109/178 (61%), Gaps = 6/178 (3%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
A F+ +A++R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALSRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 137
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHSLCIN-----IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFM 282
>gi|195443968|ref|XP_002069658.1| GK11456 [Drosophila willistoni]
gi|194165743|gb|EDW80644.1| GK11456 [Drosophila willistoni]
Length = 691
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 108/179 (60%), Gaps = 6/179 (3%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
A F+ +A+ R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALGRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 137
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 196
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTLVDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFMT 283
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 28/125 (22%)
Query: 343 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 402
D++D E+D Y+ EEE K +W+ +N EYL+EQ +E
Sbjct: 444 DLNDDELDQYVLTEEEAVTKLNMWQTLNAEYLKEQKERE--------------------- 482
Query: 403 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 462
+ LA + +K K ++ GP+ TA EA +ML +K++SSKINY++L
Sbjct: 483 ---ERLAKEREEGKPEKKKRKPPRKKI----IGPSSTAGEAIEKMLQEKKISSKINYEIL 535
Query: 463 EKLFD 467
+ L D
Sbjct: 536 KTLID 540
>gi|308503040|ref|XP_003113704.1| CRE-BRF-1 protein [Caenorhabditis remanei]
gi|308263663|gb|EFP07616.1| CRE-BRF-1 protein [Caenorhabditis remanei]
Length = 783
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/470 (26%), Positives = 210/470 (44%), Gaps = 86/470 (18%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
++ A F+ + V+RN T+GR V A CLY+ CR ++ LL+DFS+ INV++LG
Sbjct: 102 MNTAFNFFKMCVSRNLTRGRNRSSVVAVCLYITCRLENTAHLLLDFSDVTQINVFDLGRN 161
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITT 135
+ + L I L DP +++ +F L G +K + A ++ MKRDW++T
Sbjct: 162 LNFIARSLRIN-----LPATDPCLYIIRFACVLDFGDKQKDIVTLATRLVQRMKRDWMST 216
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+P+G+CGAAL ++A + S +DIV++VHI E+ + KRL EF T SGSLTI++F
Sbjct: 217 GRRPTGICGAALLIAARSMNFNRSINDIVRVVHISESVIRKRLDEFSQTPSGSLTIDEFS 276
Query: 196 ARKKELHEG-----------VAANLPNNGPKVSGMNEVLCK---HKDTG--KPFACGLCR 239
E E L + M + L + H + K +
Sbjct: 277 TVDLEHSEDPPAYREARRRAREEQLRKEAEQAESMKDQLGEMEAHVEAALDKKRKEKFSK 336
Query: 240 SCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSP----FMSRVDKV 295
S Y + ++ GLE GAD ++ E + NS F+ + P + + DK
Sbjct: 337 SPYAKLISEGLGLEKGAD----EMVRNEIL-------NSVFDAVDEEPCSSNSLEKYDKY 385
Query: 296 QSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHN 355
+ P ES+G+ + +Q + P + + D +I D E+D Y+
Sbjct: 386 R-PSLESLGIKPSQVSQ-----------ELPRISSVPVG----DIDEEISDSEIDSYILT 429
Query: 356 EEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAA 415
E E K W + N + + K + + K + + + + +AA+A
Sbjct: 430 ESEVAIKTDYWMKANGDVM-----KAIEERRREREVNGDVKKKRKSTRKTETVCTSAASA 484
Query: 416 VAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
V K ++ +K+LS+K+NY++L+ L
Sbjct: 485 VEK----------------------------VIAEKKLSNKVNYEMLKDL 506
>gi|403215833|emb|CCK70331.1| hypothetical protein KNAG_0E00630 [Kazachstania naganishii CBS
8797]
Length = 635
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 123/195 (63%), Gaps = 7/195 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + +AL+I D I A ++Y +A++ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 90 LRAVSHALSI--PDYITDAAFQWYKLALSYNFVQGRRSQNVIAACLYVACRKEKTHHMLI 147
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS+ L ++VY +GA +L++ + L+I L DPS+F+ F ++L G K KV
Sbjct: 148 DFSSRLQVSVYSIGATFLKMVKRLHITK----LPMADPSLFIQHFAEKLDLGDKKIKVVK 203
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 204 DAVKLAQRMSDDWMFEGRRPAGIAGACVLLACRMNNLRRTHTEIVSVSHVAEDTLQERLN 263
Query: 180 EFENTDSGSLTIEDF 194
EF+ T +G L++++F
Sbjct: 264 EFKATGAGKLSVKEF 278
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 336 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 395
D ++ +D+DD E++ L +EE K+ IW +N EYL EQ K A A S
Sbjct: 496 DDEEDLADVDDEEIETLLLDEEAASLKERIWVGINEEYLLEQEEKRLKEEADMIAGNTST 555
Query: 396 KNCPEGLQAAQ--------ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 447
K G + + + ++ A A RK + Q+ A+ SG A TA ++ + M
Sbjct: 556 KRKRNGTKGRKRKLVKIEVDTTSSVGAMDALIRKSEMQEALKLAEESGDA-TAADSVKNM 614
Query: 448 LTKKRLSSKINYDVLEKLF 466
L K S KINY+ ++ LF
Sbjct: 615 LQKASFSKKINYNAIDNLF 633
>gi|393243240|gb|EJD50755.1| hypothetical protein AURDEDRAFT_182141 [Auricularia delicata
TFB-10046 SS5]
Length = 1042
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 121/204 (59%), Gaps = 7/204 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ Q+ +A+ + E I A+R++ +A+ F KGR++ V A CLY+ACRQ+ +LI
Sbjct: 323 IMQVASAMRLPEI--IGERAQRYFKLALGTGFVKGRKSLYVVAVCLYVACRQRKTSHMLI 380
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 119
DFS+ L +NV+ LG YL I+ + L+ +DP+ ++H+F L G +V
Sbjct: 381 DFSDMLQVNVFSLGRTYLDFINDCNISKQD--LELIDPATYIHRFASLLEFGEETSRVAS 438
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A ++ DW+ GR+PSG+CGAAL ++A + + S +I+++V I + T+MKRL
Sbjct: 439 DAVRLVRRFSTDWMVFGRRPSGICGAALLLAARMNNFRRSVQEIIQVVKIADTTIMKRLE 498
Query: 180 EFENTDSGSLTIEDFMARKKELHE 203
EF+ T S +LT+ +F R +L E
Sbjct: 499 EFKQTPSAALTVHEF--RNVDLQE 520
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 57/130 (43%), Gaps = 29/130 (22%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D +D+ E+DG + EE K+ IW E+NR+YL+ AAK A
Sbjct: 844 DELLGLDEDELDGLILTPEEVQLKERIWVEINRDYLQNLAAKMAV--------------- 888
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT--RRMLTKKRLSSK 456
E A A K RK+ Q + ++ N T L+A R L K++S K
Sbjct: 889 --------ESGGGAEAQKRKPRKKGQGNKPRDSNNP----TGLDAVDAARKLVHKKVSKK 936
Query: 457 INYDVLEKLF 466
INY LE LF
Sbjct: 937 INYAALEGLF 946
>gi|195391494|ref|XP_002054395.1| GJ22828 [Drosophila virilis]
gi|194152481|gb|EDW67915.1| GJ22828 [Drosophila virilis]
Length = 666
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 109/178 (61%), Gaps = 6/178 (3%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
A F+ +A+ R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALHRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGR 137
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSVDPCLYIMRFANRLQLGPKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
+P+GLCGAAL ++A H + +D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHEFSRTLADVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFM 282
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 29/123 (23%)
Query: 343 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 402
D++D E+D Y+ E+E K +W+ +N E+L EQ +E
Sbjct: 438 DLNDEELDQYVLTEQEADTKLSMWKNLNAEFLREQKERE--------------------- 476
Query: 403 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 462
+ LA + +K K +K+ GP+ TA EA +ML +K++SSKINYD+L
Sbjct: 477 ---ERLAKEREEGKPEKKKRKPRKKVI-----GPSSTAGEAIEKMLQEKKISSKINYDIL 528
Query: 463 EKL 465
+ L
Sbjct: 529 KTL 531
>gi|241958762|ref|XP_002422100.1| tanscription factor TFIIIB subunit, putative; transcription factor
IIIB subunit, putative [Candida dubliniensis CD36]
gi|223645445|emb|CAX40101.1| tanscription factor TFIIIB subunit, putative [Candida dubliniensis
CD36]
Length = 553
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 124/479 (25%), Positives = 218/479 (45%), Gaps = 63/479 (13%)
Query: 14 DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 73
D I A ++ +A+ NF +GRR+ V A+CLY+ACR++ +LIDFS+ L I+VY L
Sbjct: 106 DYIAEAAGEWFRLALTLNFVQGRRSNNVLATCLYVACRKERTHHMLIDFSSRLQISVYSL 165
Query: 74 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDW 132
GA +L++ + L+I L DPS+F+ F ++L KV A + M DW
Sbjct: 166 GATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFKDKATKVAKDAVKLAHRMAADW 221
Query: 133 ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIE 192
I GR+P+G+ GA + ++A + + S ++IV + H+ E TL +RL EF+ T +G L+I+
Sbjct: 222 IHEGRRPAGIAGACVLLAARMNNFRRSHAEIVAVSHVGEETLQRRLNEFKKTKAGELSIK 281
Query: 193 DFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGL 252
F +E+ ++N P + K M + K + +E+ ++E
Sbjct: 282 SF----REVDNLESSN-PPSFEKNRAMELKISKKLQQQQT-------DNFEDLTKMTEEE 329
Query: 253 EGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQ 312
+ +++++ + + + E+ + M R+ K++ E+ + K
Sbjct: 330 RNSVFGKLSKEEAQKQLLMNTILSDITITSETLNDQMDRILKMKKTSLEN-SLYKTPYEL 388
Query: 313 TASNEGEGDHTKT-------------PGVDATTE--ASDGSDNFSDIDDFEVDGYLHNEE 357
+N E D T+ P D + +S+ N D D+ + L EE
Sbjct: 389 ALANGSENDPTRIWNINKPRNLVANLPKTDDILQNVSSEVELNSDDDDEIVRESKL-TEE 447
Query: 358 EKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVA 417
E K+ IW +N +YL EQ K Q A EL + +
Sbjct: 448 EVAIKERIWTGLNHDYLVEQEKKRLK-------------------QEADELTGNTSKTSS 488
Query: 418 KSRKEKQQKR-AAEAKN---------SGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 466
+R+++ + AE + G ++A ++ + ++K +S KINYD L+ L
Sbjct: 489 SNRRKRNKSSLPAELRKELGDIDLDEDGTPRSAADSAKMYISKTSVSKKINYDSLKGLL 547
>gi|358368039|dbj|GAA84657.1| transcription factor TFIIIB complex subunit Brf1 [Aspergillus
kawachii IFO 4308]
Length = 752
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 118/194 (60%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 146 QLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTIMLID 203
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F +L G +V
Sbjct: 204 FADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGSATMQVASE 263
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 264 AVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRLNE 323
Query: 181 FENTDSGSLTIEDF 194
F +T+SG LT++ F
Sbjct: 324 FSSTESGELTVDQF 337
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 338 SDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 391
SDN ++ID D EV L + E K+ IW N++YL Q AK A K AL
Sbjct: 486 SDN-TEIDAAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRAL 539
Query: 392 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA------AEAKN----SGPAQTAL 441
A + A V K RK ++ + E ++ S A T
Sbjct: 540 ------------AEADSHPGADGRVHKPRKRRRGRLGDVTYLEGEGEDADGRSTRASTPA 587
Query: 442 EATRRMLTKKRLSSKINYDVLEKLFDD 468
EATRRML ++ S KINY +LE LF D
Sbjct: 588 EATRRMLERRGFSKKINYRLLESLFGD 614
>gi|8099212|gb|AAF72065.1|AF262374_1 RNA polymerase III transcription factor BRF [Drosophila
melanogaster]
Length = 662
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 108/178 (60%), Gaps = 6/178 (3%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
A F+ +A+ R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALGRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 137
+L L I + +DP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSLDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFM 282
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 35/128 (27%)
Query: 343 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 402
D++D E+D Y+ EEE K +W+ +N EYL+EQ ++
Sbjct: 438 DLNDDELDQYVLTEEESVAKLEMWKNLNAEYLQEQKERDER------------------- 478
Query: 403 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINY 459
+AK R+E + +R GP+ TA EA +ML +K++SSKINY
Sbjct: 479 -------------LAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINY 525
Query: 460 DVLEKLFD 467
++L+ L D
Sbjct: 526 EILKTLTD 533
>gi|8099214|gb|AAF72066.1|AF262375_1 RNA polymerase III transcription factor BRF [Drosophila
melanogaster]
Length = 662
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 108/178 (60%), Gaps = 6/178 (3%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
A F+ +A+ R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALGRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 137
+L L I + +DP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSLDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFM 282
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 35/128 (27%)
Query: 343 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 402
D++D E+D Y+ EEE K +W+ +N EYL+EQ ++
Sbjct: 438 DLNDDELDQYVLTEEESVAKLEMWKNLNAEYLQEQKERDER------------------- 478
Query: 403 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINY 459
+AK R+E + +R GP+ TA EA +ML +K++SSKINY
Sbjct: 479 -------------LAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINY 525
Query: 460 DVLEKLFD 467
++L+ L D
Sbjct: 526 EILKTLTD 533
>gi|24647658|ref|NP_650616.2| Brf, isoform A [Drosophila melanogaster]
gi|281361961|ref|NP_001163636.1| Brf, isoform B [Drosophila melanogaster]
gi|15291933|gb|AAK93235.1| LD32109p [Drosophila melanogaster]
gi|23171547|gb|AAF55409.2| Brf, isoform A [Drosophila melanogaster]
gi|220945996|gb|ACL85541.1| Brf-PA [synthetic construct]
gi|272477027|gb|ACZ94932.1| Brf, isoform B [Drosophila melanogaster]
Length = 662
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 108/178 (60%), Gaps = 6/178 (3%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
A F+ +A+ R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALGRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 137
+L L I + +DP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSLDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFM 282
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 35/128 (27%)
Query: 343 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 402
D++D E+D Y+ EEE K +W+ +N EYL+EQ ++
Sbjct: 438 DLNDDELDQYVLTEEESVAKLEMWKNLNAEYLQEQKERDER------------------- 478
Query: 403 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINY 459
+AK R+E + +R GP+ TA EA +ML +K++SSKINY
Sbjct: 479 -------------LAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINY 525
Query: 460 DVLEKLFD 467
++L+ L D
Sbjct: 526 EILKTLTD 533
>gi|324501334|gb|ADY40597.1| Transcription factor IIIB 90 kDa subunit [Ascaris suum]
Length = 1113
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 105/179 (58%), Gaps = 6/179 (3%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A F+ + V RNFT+GR V A+CLY+ CR ++ LL+DFS+ +NV++LG
Sbjct: 104 IDTAHNFFRMCVCRNFTRGRMRSHVVAACLYMTCRLENTAHLLLDFSDVTQVNVFDLGRT 163
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 135
L + L I L DP +++ +F L G K+V A ++ MKRDWI T
Sbjct: 164 LNFLARSLKIN-----LPTTDPCLYILRFAVLLEFGEKEKEVVSLATRLVQRMKRDWIAT 218
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
GR+P+GLCGAAL ++A + + DIV++VHI E + KRL EF T S LTI++F
Sbjct: 219 GRRPTGLCGAALVLAARCYNFNRTIGDIVRVVHISETVVRKRLDEFGKTPSSELTIDEF 277
>gi|444316962|ref|XP_004179138.1| hypothetical protein TBLA_0B08030 [Tetrapisispora blattae CBS 6284]
gi|387512178|emb|CCH59619.1| hypothetical protein TBLA_0B08030 [Tetrapisispora blattae CBS 6284]
Length = 549
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 123/213 (57%), Gaps = 7/213 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + +AL I E + A ++Y +A+A F +GRR + V A+CLY+ACR++ P +L+
Sbjct: 86 IRAVAHALAIPE--HVTDAAFQWYKLALAHGFVRGRRAQNVVAACLYVACRKERTPHMLV 143
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS L ++VY +GA +LQL + L++ D L DPSIF+ FT+RL G + +V
Sbjct: 144 DFSARLQVSVYAVGATFLQLVRKLHVQD----LPLADPSIFIQHFTERLALGSRQVRVAR 199
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M RD + GR+P+G+ GA + ++ + L+ + ++I + H+ E TL +RL
Sbjct: 200 DAVRLAQRMARDGMQDGRRPAGVAGACVLLACRMNNLRRTHAEIAAVSHVAEETLQQRLG 259
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVAANLPNN 212
EF T + +++ F A + E + P +
Sbjct: 260 EFRATGAAKMSVAGFRASTSDTREDSDTDEPGS 292
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 26/135 (19%)
Query: 335 SDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 394
SD ++ D+DD E+D L +EE K+ +W +N +YL EQ
Sbjct: 437 SDDPEDLGDVDDEELDSQLLDEESSAAKERVWLHLNADYLLEQ----------------- 479
Query: 395 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSG---PAQTALEATRRMLTKK 451
E + QE A AA A RK++ ++ A + G TA ++ + ML K
Sbjct: 480 -----ENKRLKQE-ADEAAGNTAHVRKKRTRQVAKIEPHDGLQIEPDTAADSVKSMLQKA 533
Query: 452 RLSSKINYDVLEKLF 466
S KINYD ++ LF
Sbjct: 534 SFSKKINYDAIDGLF 548
>gi|339241573|ref|XP_003376712.1| transcription factor IIIBsubunit [Trichinella spiralis]
gi|316974558|gb|EFV58043.1| transcription factor IIIBsubunit [Trichinella spiralis]
Length = 605
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 141/481 (29%), Positives = 229/481 (47%), Gaps = 58/481 (12%)
Query: 2 RQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ M+N A + S + RFY IA R+ T+GR++ V S LY++CR + P +LI
Sbjct: 86 KHMENVASQLQLSQAVTEAGFRFYKIAHGRSLTRGRKSSHVIPSLLYISCRLNAVPQMLI 145
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS+ +NV+ LG + L + +++ L DP I++ +F +L G + +V
Sbjct: 146 DFSDVAEVNVFTLGRTFSFLAREMHLK-----LPPTDPCIYVLRFAQKLRFGDKENQVIH 200
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A ++ MK DW+T GR+P+GLCGAAL ++A +G + ++V++VHI L KRL
Sbjct: 201 LALRLIQRMKNDWMTYGRRPAGLCGAALIIAARYYGFNRTIENVVRVVHIGAGVLRKRLD 260
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCR 239
EF T S S T+++F K E+ E + M ++L ++ KPF L
Sbjct: 261 EFCLTPSASFTLDEFC--KFEILEQCDPPSFTKNMEKEEMKKLL---EEKLKPFDEELRE 315
Query: 240 SCYEEFMTISEGLEGGADPPAFQV-AERERMVKASA-EENSSFERESDSPFMSRVDKVQS 297
+ + + + + + ++ E++ VK S E +S + +S SR+ + ++
Sbjct: 316 TEKKVQLALKQKVRSRYGASSWSSDDEQQTAVKDSVTNEVASVDYPEESSTASRLSEWEA 375
Query: 298 PEPESIGVPK--------NCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEV 349
E S+ +P + + +EG D T P T+AS+ + D+DD E+
Sbjct: 376 AEASSMSLPSWSDIIPSSSSEMTSMEDEGPVDSTLEP---QQTDASELNTL-DDLDDDEL 431
Query: 350 DGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELA 409
DGYL EE K +W +N E++EE ++ K +N
Sbjct: 432 DGYLLTPEEAALKTKLWIRVNGEFMEEYEKRKLLKEQEKEEGSKGRRNF----------- 480
Query: 410 AAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL--EKLFD 467
+KR E G A T EA +RM+ +KRLS KINY+VL E F+
Sbjct: 481 ---------------RKRGEE----GTAATPGEAIKRMVFEKRLSKKINYEVLMEEDNFE 521
Query: 468 D 468
D
Sbjct: 522 D 522
>gi|195349135|ref|XP_002041102.1| GM15370 [Drosophila sechellia]
gi|194122707|gb|EDW44750.1| GM15370 [Drosophila sechellia]
Length = 356
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 109/178 (61%), Gaps = 6/178 (3%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
A F+ +A++R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALSRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 137
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHSLCIN-----IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFM 282
>gi|344230463|gb|EGV62348.1| BRF1-domain-containing protein [Candida tenuis ATCC 10573]
Length = 588
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 140/537 (26%), Positives = 223/537 (41%), Gaps = 120/537 (22%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++ + +LNI D I A ++ +A+ NF +GRR++ V A+CLY+ACR++ LLI
Sbjct: 92 IKDLAASLNI--PDYISDAAHGWFKLALNTNFVQGRRSQNVTAACLYIACRKEKTSHLLI 149
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-----LPGGNK 115
DFS+ L I+V+ LGA +L++ + L I L VDPS+F+ F +RL P
Sbjct: 150 DFSSRLQISVFSLGATFLKMVRTLNITK----LPLVDPSLFISHFAERLNLDREKPNSTN 205
Query: 116 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 175
+V A I M +D I GR+P+G+ GA + ++ +G + S+IV I H+ TL
Sbjct: 206 QVISDAIKISFRMAKDSIVEGRRPAGVAGACVMMALRMNGFQKDPSEIVAIAHVSSDTLQ 265
Query: 176 KR-------------------------------------------------LIEFENTDS 186
R L+E TDS
Sbjct: 266 ARMDEFKRTSSGKLRIREFRDKSEQAEAAMPPSYTRNRERSKKDIAAAEGSLVEVSETDS 325
Query: 187 GSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFM 246
S T + + E + +P N ++V + D S E++M
Sbjct: 326 RSATTHLETSADTQPQETDSQYVPQNTDSTVTNSQVTSLNTD-----------SQDEDYM 374
Query: 247 ------TISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEP 300
TISE ++ D P+F V E + FER D + + + PEP
Sbjct: 375 ESRGEETISE-IKVAKDAPSF-VHEMASLGFNPELLQHDFERYKD--IIEKGYSLDYPEP 430
Query: 301 ESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEAS----DGSDNFSDIDDFEV-----DG 351
E ++TA E E D K G+ + S D + +D+DD E+ +
Sbjct: 431 E-----PTSDSETADKEEEFDPNKPQGLVKYCKPSSYYLDLVSSSADLDDVELTEAEENW 485
Query: 352 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 411
YL+++E K+ +W MN++YL EQ K L+A +
Sbjct: 486 YLNSDEMAKAKEQLWLSMNKDYLLEQERKR--------------------LKAETDELTG 525
Query: 412 AAAAVAKSRKEKQQKRAAEAKN-----SGPAQTALEATRRMLTKKRLSSKINYDVLE 463
+ K RK K + +G +T ++ ++M+ +K S KINYD L+
Sbjct: 526 NTSGKKKRRKTKADREKGIIDETLEALTGEPRTPADSVKQMMQRKTFSKKINYDALD 582
>gi|401881866|gb|EJT46148.1| transcription factor iiib 70 kd subunit [Trichosporon asahii var.
asahii CBS 2479]
gi|406701129|gb|EKD04282.1| transcription factor iiib 70 kd subunit [Trichosporon asahii var.
asahii CBS 8904]
Length = 673
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 112/188 (59%), Gaps = 4/188 (2%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G + + A+RFY +AV F +GRRT+ V ASC+YL R + +LIDFS L IN
Sbjct: 91 MGIAPSVQRGAQRFYSLAVDNKFNRGRRTDFVVASCIYLYSRFEKDALMLIDFSERLQIN 150
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASM 128
VYELGA YL+L L + +L ++DP+++ +F +RL G + V A ++
Sbjct: 151 VYELGATYLKLRSCLNL---DQILPEIDPAVYNIRFANRLDFGAASATVARDASRLIKRF 207
Query: 129 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGS 188
K DW+T GR+P+G+CGA L ++A + ++ ++V + T+ KRL+EF T + +
Sbjct: 208 KADWMTAGRRPAGICGACLVIAARMSDFLRTPEEVAQVVKVSPLTIKKRLVEFAGTAAAN 267
Query: 189 LTIEDFMA 196
T+E++ A
Sbjct: 268 KTVEEWRA 275
>gi|317027053|ref|XP_001400004.2| transcription factor TFIIIB complex subunit Brf1 [Aspergillus niger
CBS 513.88]
Length = 742
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ AL I ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 146 QLSRALTIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTIMLID 203
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F +L G +V
Sbjct: 204 FADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGSATMQVASE 263
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 264 AVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRLNE 323
Query: 181 FENTDSGSLTIEDF 194
F +T+SG LT++ F
Sbjct: 324 FSSTESGELTVDQF 337
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 338 SDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 391
SDN ++ID D EV L + E K+ IW N++YL Q AK A K AL
Sbjct: 486 SDN-TEIDAAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRAL 539
Query: 392 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA------AEAKN----SGPAQTAL 441
A + A V K RK ++ + E ++ S A T
Sbjct: 540 ------------AEADSHPGADGRVHKPRKRRRGRLGDVTYLEGEGEDGDGRSTRASTPA 587
Query: 442 EATRRMLTKKRLSSKINYDVLEKLFDD 468
EATRRML ++ S KINY +LE LF D
Sbjct: 588 EATRRMLERRGFSKKINYRLLESLFGD 614
>gi|134056932|emb|CAK44279.1| unnamed protein product [Aspergillus niger]
Length = 752
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ AL I ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 146 QLSRALTIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTIMLID 203
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F +L G +V
Sbjct: 204 FADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGSATMQVASE 263
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 264 AVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRLNE 323
Query: 181 FENTDSGSLTIEDF 194
F +T+SG LT++ F
Sbjct: 324 FSSTESGELTVDQF 337
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 338 SDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 391
SDN ++ID D EV L + E K+ IW N++YL Q AK A K AL
Sbjct: 486 SDN-TEIDAAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRAL 539
Query: 392 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA------AEAKN----SGPAQTAL 441
A + A V K RK ++ + E ++ S A T
Sbjct: 540 ------------AEADSHPGADGRVHKPRKRRRGRLGDVTYLEGEGEDGDGRSTRASTPA 587
Query: 442 EATRRMLTKKRLSSKINYDVLEKLFDD 468
EATRRML ++ S KINY +LE LF D
Sbjct: 588 EATRRMLERRGFSKKINYRLLESLFGD 614
>gi|350634822|gb|EHA23184.1| hypothetical protein ASPNIDRAFT_52343 [Aspergillus niger ATCC 1015]
Length = 745
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ AL I ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 139 QLSRALTIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTIMLID 196
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F +L G +V
Sbjct: 197 FADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGSATMQVASE 256
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 257 AVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRLNE 316
Query: 181 FENTDSGSLTIEDF 194
F +T+SG LT++ F
Sbjct: 317 FSSTESGELTVDQF 330
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 338 SDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 391
SDN ++ID D EV L + E K+ IW N++YL Q AK A K AL
Sbjct: 479 SDN-TEIDAAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRAL 532
Query: 392 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA------AEAKN----SGPAQTAL 441
A + A V K RK ++ + E ++ S A T
Sbjct: 533 ------------AEADSHPGADGRVHKPRKRRRGRLGDVTYLEGEGEDGDGRSTRASTPA 580
Query: 442 EATRRMLTKKRLSSKINYDVLEKLFDD 468
EATRRML ++ S KINY +LE LF D
Sbjct: 581 EATRRMLERRGFSKKINYRLLESLFGD 607
>gi|440290064|gb|ELP83518.1| transcription factor IIIB 70 kDa subunit, putative [Entamoeba
invadens IP1]
Length = 545
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 113/398 (28%), Positives = 175/398 (43%), Gaps = 58/398 (14%)
Query: 2 RQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF 57
RQM+ +GE ++ + +R Y +A+ R TKGRR +CLY+ CR++
Sbjct: 85 RQMRAIRRVGEMLKMKSSDIESGERLYRVAMQRGITKGRRVAYSAGACLYIICRRERTDH 144
Query: 58 LLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKV 117
LLIDF++ L+++V +LG ++ C+ L + L VDP ++L +F + L V
Sbjct: 145 LLIDFADVLHVSVRKLGRTFIHFCKELKLD-----LPFVDPCLYLQRFGEDLAFEKTADV 199
Query: 118 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
TA I M RDW+ GR+PSG+CG ALY++ H + +IV +V + T+ R
Sbjct: 200 VRTAMRICQRMNRDWMHYGRRPSGICGVALYLAGRLHNEPRTLEEIVHVVRLSTTTVRVR 259
Query: 178 LIEFENTDSGSLTIEDFMARKKELHEGVAANLP--------NNGPKVSGMNEVLCKHKDT 229
L EF T S LT+E +E N P + +V G N L K K
Sbjct: 260 LKEFLRTPSADLTLEQL---NEEDTSTTHCNPPSYTQNRLKDKAREVVGANVPLKKRKRN 316
Query: 230 GKPFACGLCRSCYEEFMTISEG----LEG--GADPPAFQVAERE-RMVKASAEENSSFER 282
+ + EE T+ G + G D + E + K E F+
Sbjct: 317 CDEYEAAEDKKLTEEIATLIGGEVEKIMGCKNIDEKPINLGSLEGKSAKDVGLEGEKFDV 376
Query: 283 ESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFS 342
E + V K++ + ES GV +EGE D+
Sbjct: 377 EK----LVDVQKIKEDDFESEGV----------DEGECQVGDCAAFDS------------ 410
Query: 343 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 380
E+DGY ++ E +K IWEE+N E+LE++ +
Sbjct: 411 -----ELDGYFLDDTEAEKRKQIWEELNAEFLEKEKKR 443
>gi|115391595|ref|XP_001213302.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114194226|gb|EAU35926.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 756
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 119/196 (60%), Gaps = 4/196 (2%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 59
+ Q+ ALN+ ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 145 INQLSRALNVPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVML 202
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVC 118
ID ++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 203 IDLADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGPSTMQVA 262
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 263 SEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRL 322
Query: 179 IEFENTDSGSLTIEDF 194
EF +T+SG LT++ F
Sbjct: 323 NEFSSTESGELTVDQF 338
>gi|443896379|dbj|GAC73723.1| transcription initiation factor TFIIIB, Brf1 subunit [Pseudozyma
antarctica T-34]
Length = 763
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 123/207 (59%), Gaps = 21/207 (10%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAV-----------ARNFTKGRRTEQVQASCLYLA 49
+ M +AL I + A RF+ +A+ +N+ GR++E ASCLY+A
Sbjct: 88 IHNMASALRI--PSHVADRALRFFTLALDGGASAATGDEPKNYVLGRKSEYTVASCLYVA 145
Query: 50 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 109
CR + +LIDF++ + +NV+ LG YL+L +VL + L +DPSI++ +F L
Sbjct: 146 CRMEKTTHMLIDFADAIQVNVFILGRSYLKLIRVLNLR-----LPLIDPSIYIARFA-AL 199
Query: 110 LPGGN--KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 167
L G+ +KV A +++ ++DWIT GR+P+G+CGA L ++A + + S S+++++V
Sbjct: 200 LDFGDETQKVAYDASRLVSRFQKDWITEGRRPAGICGACLMLAARMNHFRRSVSEVIQVV 259
Query: 168 HICEATLMKRLIEFENTDSGSLTIEDF 194
I + TL RL EF+ T SG LT++DF
Sbjct: 260 KIADVTLRARLDEFKKTPSGQLTVQDF 286
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 22/142 (15%)
Query: 325 TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 384
T G + A+ G D +D+D+ E+D ++ + EE K+ +W E N++++E+ K+
Sbjct: 509 TSGGRRRSVAAAGVDELADLDEEELDRFILSPEEVRIKERVWMEFNKDWMEQTLKKQLK- 567
Query: 385 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 444
L+ Q++ + + K K+ K +A + +A E+
Sbjct: 568 -----------------LEHDQKM----GVPIREPYKRKKPKAPRDASTAMHTSSAAESA 606
Query: 445 RRMLTKKRLSSKINYDVLEKLF 466
+ ML +K+ S KINYD L LF
Sbjct: 607 KMMLKQKQFSKKINYDALNNLF 628
>gi|320170859|gb|EFW47758.1| BRF1 protein [Capsaspora owczarzaki ATCC 30864]
Length = 580
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 111/177 (62%), Gaps = 6/177 (3%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
+A + AV RNF +GR+T V A+C+YL CR P +++DFS+ +++NV+ LG Y
Sbjct: 1 MAHSVFREAVDRNFIQGRKTLIVVAACVYLVCRHDQSPIMMLDFSDAISVNVFVLGNTYS 60
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGR 137
QLC+VL+ + VDPS+ + +F L G + +V TA ++ MKRDWI GR
Sbjct: 61 QLCKVLH-----KTVPVVDPSLLILRFVSMLEFGSKENEVSRTATRLVQRMKRDWILVGR 115
Query: 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
+P+GLC AA+ ++A HG S+ +I+ +V IC+ TL +RL EFE T SG LT +F
Sbjct: 116 RPAGLCAAAILLAARMHGFSRSQREIIHVVRICDMTLRRRLEEFEETPSGQLTTVEF 172
>gi|121706010|ref|XP_001271268.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus clavatus NRRL 1]
gi|119399414|gb|EAW09842.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus clavatus NRRL 1]
Length = 755
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 118/196 (60%), Gaps = 4/196 (2%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 59
+ Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 146 INQLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVML 203
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVC 118
IDF++ L +NV++LG Y L L + ++ +DP +++F +L G +V
Sbjct: 204 IDFADVLMVNVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGTATMQVA 263
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 264 SEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITINQRL 323
Query: 179 IEFENTDSGSLTIEDF 194
EF +T+S LT++ F
Sbjct: 324 NEFSSTESAELTVDQF 339
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 346 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 405
D EV L + E K+ IW N+EYL Q AK A A+A + G++
Sbjct: 506 DPEVADCLLSPAEVEIKERIWVHENKEYLRIQQAKALKRALAEAESQP-------GMRKP 558
Query: 406 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
++ V + + + S PA EATRRML ++ S KINY +LE L
Sbjct: 559 RKRRKGRLGDVTYLEGDGEDADGRSTRASTPA----EATRRMLERRGFSKKINYRLLESL 614
Query: 466 FDD 468
F D
Sbjct: 615 FGD 617
>gi|167389091|ref|XP_001738814.1| transcription factor IIIB 60 kDa subunit [Entamoeba dispar SAW760]
gi|165897805|gb|EDR24877.1| transcription factor IIIB 60 kDa subunit, putative [Entamoeba
dispar SAW760]
Length = 546
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 110/398 (27%), Positives = 179/398 (44%), Gaps = 58/398 (14%)
Query: 2 RQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF 57
RQM+ +GE ++ + +R Y +A+ TKGR+ +CLY+ CR++
Sbjct: 85 RQMRAIKKVGEMLKMKSIDIESGQRLYRVAMQTGITKGRKFSYSAGACLYIICRRERSDH 144
Query: 58 LLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKV 117
LLIDF++ L+++V LG +++ C+ L L VDP ++L +F + L V
Sbjct: 145 LLIDFADVLHVSVRRLGRTFIRFCEELKFD-----LPFVDPCLYLQRFGEDLAFEKTGDV 199
Query: 118 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
TA I M RDW+ GR+PSG+CG ALY++ HG + +IV +V + T+ R
Sbjct: 200 VRTAMRICQRMNRDWMHYGRRPSGICGVALYLAGRLHGEPRTLEEIVHVVRLSTTTVRVR 259
Query: 178 LIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGL 237
L EF T S LT+E +L+E + N P + L + KD +
Sbjct: 260 LKEFLRTPSADLTLE-------QLNEDDQSTTHCNPPSYT-----LNRLKDKARETV--- 304
Query: 238 CRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQS 297
GA+ P + + + A E+ E ++ V K+
Sbjct: 305 -----------------GANVPLKK--RKGNGDEYEAAEDKKLTEEIETLIGGEVSKIMG 345
Query: 298 -----PEPESIGVPKNCTTQTASNEGEG-------DHTKTPGVDATTEASD-GSDNFSDI 344
+P ++G + + + EGE D K D +E D G D
Sbjct: 346 CKDIDSKPLNLGTLEGKSAKDVGLEGEHFDVEKLVDINKMKEEDFESEGVDEGECAVGDC 405
Query: 345 DDF--EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 380
+F E+DGY +++E +K IWEE+N E+LE++ +
Sbjct: 406 SEFDNELDGYFLDDKEAEKRKQIWEELNAEFLEKEKKR 443
>gi|327356251|gb|EGE85108.1| transcription factor TFIIIB complex subunit brf1 [Ajellomyces
dermatitidis ATCC 18188]
Length = 820
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 140 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 197
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 198 FADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGSSMMQVASE 257
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 258 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 317
Query: 181 FENTDSGSLTIEDF 194
F+ T+SG LT++ F
Sbjct: 318 FKATESGDLTVDQF 331
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 343 DID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 396
DID D EV L + E K+ IW N++YL Q AK A A+ E
Sbjct: 487 DIDASEFDSDPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAE---EEDLI 543
Query: 397 N--CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 454
N P + ++ V + + + + + A T EATRRML K+ S
Sbjct: 544 NGRVPGITRRPRKRRKGRMGDVGYLEGKGENGEDVDGRGTR-ASTPAEATRRMLEKRGFS 602
Query: 455 SKINYDVLEKLFDD 468
KINY +LE++++D
Sbjct: 603 KKINYRLLEEMYED 616
>gi|239607291|gb|EEQ84278.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
dermatitidis ER-3]
Length = 818
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 140 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 197
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 198 FADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGSSMMQVASE 257
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 258 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 317
Query: 181 FENTDSGSLTIEDF 194
F+ T+SG LT++ F
Sbjct: 318 FKATESGDLTVDQF 331
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 343 DID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 396
DID D EV L + E K+ IW N++YL Q AK A A+ E
Sbjct: 487 DIDASEFDSDPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAE---EEDLI 543
Query: 397 N--CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 454
N P + ++ V + + + + + A T EATRRML K+ S
Sbjct: 544 NGRVPGITRRPRKRRKGRMGDVGYLEGKGENGEDVDGRGTR-ASTPAEATRRMLEKRGFS 602
Query: 455 SKINYDVLEKLFDD 468
KINY +LE++++D
Sbjct: 603 KKINYRLLEEMYED 616
>gi|303317508|ref|XP_003068756.1| Transcription factor TFIIB repeat containing protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240108437|gb|EER26611.1| Transcription factor TFIIB repeat containing protein [Coccidioides
posadasii C735 delta SOWgp]
gi|320038733|gb|EFW20668.1| transcription factor tfiiib complex subunit brf1 [Coccidioides
posadasii str. Silveira]
Length = 805
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 138 QLSRALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAICLYVACRRQDGNTIMLID 195
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 196 FADVLMINVFKLGRTYKALLDELRLGGNIFIMNPIDPESLIYRFAKQLEFGSSMMQVASE 255
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 256 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 315
Query: 181 FENTDSGSLTIEDF 194
F+ T+SG LT++ F
Sbjct: 316 FKATESGDLTVDQF 329
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 29/133 (21%)
Query: 346 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 405
D EV L + E K+ IW N++YL Q AK A K AL A+
Sbjct: 516 DPEVRYCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRALTAA----------- 559
Query: 406 QELAAAAAAAVAKSRKEKQQKRA------AEA----KNSGPAQTALEATRRMLTKKRLSS 455
+A+ A K RK ++ + E + S A T EATR ML ++ S
Sbjct: 560 ---DPSASGAGHKPRKRRKGRMGDVTYLTGEGGDGDRASSRASTPAEATRLMLERRGFSK 616
Query: 456 KINYDVLEKLFDD 468
KINY +LEK+++D
Sbjct: 617 KINYSLLEKMYED 629
>gi|119186801|ref|XP_001244007.1| hypothetical protein CIMG_03448 [Coccidioides immitis RS]
gi|392870729|gb|EAS32553.2| transcription factor TFIIIB complex subunit brf1 [Coccidioides
immitis RS]
Length = 804
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 138 QLSRALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAICLYVACRRQDGNTIMLID 195
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 196 FADVLMINVFKLGRTYKALLDELRLGGNIFIMNPIDPESLIYRFAKQLEFGSSMMQVASE 255
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 256 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 315
Query: 181 FENTDSGSLTIEDF 194
F+ T+SG LT++ F
Sbjct: 316 FKATESGDLTVDQF 329
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 29/133 (21%)
Query: 346 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 405
D EV L + E K+ IW N++YL Q AK A K AL A+
Sbjct: 517 DPEVRYCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRALTAA----------- 560
Query: 406 QELAAAAAAAVAKSRKEKQQKRA------AEA----KNSGPAQTALEATRRMLTKKRLSS 455
+A+ A K RK ++ + E + S A T EATR ML ++ S
Sbjct: 561 ---DPSASGAGHKPRKRRKGRMGDVTYLTGEGGDGDRASSRASTPAEATRLMLERRGFSK 617
Query: 456 KINYDVLEKLFDD 468
KINY +LEK+++D
Sbjct: 618 KINYSLLEKMYED 630
>gi|407042182|gb|EKE41189.1| transcription initiation factor IIIB chain BRF, putative [Entamoeba
nuttalli P19]
Length = 546
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 110/398 (27%), Positives = 181/398 (45%), Gaps = 58/398 (14%)
Query: 2 RQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF 57
RQM+ +GE ++ + +R Y +A+ TKGR+ +CLY+ CR++
Sbjct: 85 RQMRAIKKVGEMLKMKSIDIESGQRLYRVAMQTGITKGRKFSYSAGACLYIICRRERSDH 144
Query: 58 LLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKV 117
LLIDF++ L+++V LG +++ C+ L L VDP ++L +F + L V
Sbjct: 145 LLIDFADVLHVSVRRLGRTFIRFCEELKFD-----LPFVDPCLYLQRFGEDLAFEKTGDV 199
Query: 118 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
TA I M RDW+ GR+PSG+CG ALY++ HG + +IV +V + T+ R
Sbjct: 200 VRTAMRICQRMNRDWMHYGRRPSGICGVALYLAGRLHGEPRTLEEIVHVVRLSTTTVRVR 259
Query: 178 LIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGL 237
L EF T S LT+E +L+E + P+ P +N + K ++T
Sbjct: 260 LKEFLRTPSADLTLE-------QLNEDDQST-PHCNPPSYTLNRLKDKARET-------- 303
Query: 238 CRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQS 297
GA+ P + + + A E+ E ++ V K+
Sbjct: 304 ----------------VGANVPLKK--RKGNGDEYEAAEDKKLTEEIETLIGGEVSKIMG 345
Query: 298 -----PEPESIGVPKNCTTQTASNEGEG-------DHTKTPGVDATTEASD-GSDNFSDI 344
+P ++G + + + EGE D K D +E D G D
Sbjct: 346 CKDIDSKPLNLGTLEGKSAKDVGLEGEHFDVEKLVDINKMKEEDFESEGIDEGECVVGDC 405
Query: 345 DDF--EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 380
+F E+DGY +++E +K IWEE+N E+LE++ +
Sbjct: 406 SEFDNELDGYFLDDKEAEKRKQIWEELNAEFLEKEKKR 443
>gi|242783999|ref|XP_002480298.1| transcription factor TFIIIB complex subunit Brf1, putative
[Talaromyces stipitatus ATCC 10500]
gi|218720445|gb|EED19864.1| transcription factor TFIIIB complex subunit Brf1, putative
[Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 128/218 (58%), Gaps = 10/218 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 59
++QM AL+I ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 161 IQQMALALDIPESAQ--KAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQPGNTVML 218
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KV 117
ID S+ L INV+++G Y L + L + + VDP + +F R L GNK V
Sbjct: 219 IDLSDVLMINVFKVGRAYKMLLEELRLGGTVFTMNPVDPENLILRFA-RQLEFGNKTMHV 277
Query: 118 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +R
Sbjct: 278 AKEAARIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEVTINQR 337
Query: 178 LIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPK 215
L EF +TDSG LT++ F + +H A + P+ PK
Sbjct: 338 LNEFSSTDSGDLTVDQF----RSVHLETAHDPPSFNPK 371
>gi|353234355|emb|CCA66381.1| related to BRF1-TFIIIB subunit, 70 kD [Piriformospora indica DSM
11827]
Length = 632
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 114/198 (57%), Gaps = 9/198 (4%)
Query: 14 DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 73
D ++ A+R +A +FTKGR E + A CLY+ C ++ +LIDF++ L INVY L
Sbjct: 104 DSVISTAERHLTLAYQYSFTKGRHIEHIIAVCLYMGCLEQKTSHMLIDFADILRINVYAL 163
Query: 74 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDW 132
G+ YL+ + L ++PSIF+ +F L G + +KV D A I K DW
Sbjct: 164 GSTYLKWLRTLGWKP-----PLLEPSIFITRFVALLEFGEDERKVADDANRIATRFKDDW 218
Query: 133 ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIE 192
I GR+ +G+CGAA+Y++A + + S +I+++V I + T++KRL EF T S +LT+
Sbjct: 219 IHEGRRTAGICGAAIYLAAQMNNYRRSIQEIMQVVKIADTTIIKRLEEFSATASANLTVG 278
Query: 193 DFMARKKELHEGVAANLP 210
DF + H AA+ P
Sbjct: 279 DFRVTE---HPTEAADPP 293
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 30/132 (22%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D+ + +D+ E+D Y+ E+E ++ +W E+N +YL AAK + + +K
Sbjct: 477 DDLTGLDEEELDAYICGEDEAQMRERVWTELNLDYLRRLAAKRIRDQSGEDPRPKKHKRK 536
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR-LSSKI 457
+ Q+ P +TA E+ R M R S +I
Sbjct: 537 SKPKQSFT-----------------------------PGKTAFESVRAMAQGNRTFSKRI 567
Query: 458 NYDVLEKLFDDS 469
NY++L++ FDD+
Sbjct: 568 NYNLLKETFDDN 579
>gi|164660340|ref|XP_001731293.1| hypothetical protein MGL_1476 [Malassezia globosa CBS 7966]
gi|159105193|gb|EDP44079.1| hypothetical protein MGL_1476 [Malassezia globosa CBS 7966]
Length = 660
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 113/192 (58%), Gaps = 20/192 (10%)
Query: 18 HVAKR---FYGIAV-----------ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 63
HVA+R F+ +A+ RNF GR+++ ASCLY+ACR +LIDF+
Sbjct: 99 HVAERALRFFQLALDGGTATATGSQPRNFVLGRKSDYTVASCLYVACRMAKTTHMLIDFA 158
Query: 64 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTAR 122
+ + +NV+ LG YL+L +VL + + +DPS ++ +F L G ++V A
Sbjct: 159 DVIQVNVFVLGRSYLRLLRVLNLQ-----IPLIDPSFYISRFAALLEFGDETQRVVTDAT 213
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
++ K DW+ GR+P+G+CGA L ++A + + S ++IV++V I + TL KRL EF+
Sbjct: 214 RLVTRFKMDWMVEGRRPAGICGACLLLAARMNHFRRSITEIVQVVKIADVTLRKRLEEFK 273
Query: 183 NTDSGSLTIEDF 194
T SG LTIEDF
Sbjct: 274 ATPSGQLTIEDF 285
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 25/115 (21%)
Query: 352 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 411
+L +EE K+ +W E N++YLE AA A + LEA K A
Sbjct: 483 FLLTDEEVKVKERVWMEFNKDYLE-------AALARQLKLEADQK--------------A 521
Query: 412 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 466
A +SRK + + A P +A E+ ++M+ +KR S +INYDVL LF
Sbjct: 522 GIAPAPRSRKRHKPRDGTTA----PTSSAAESAKQMMQQKRWSRRINYDVLNSLF 572
>gi|67469641|ref|XP_650799.1| transcription initiation factor IIIB chain BRF [Entamoeba
histolytica HM-1:IMSS]
gi|56467455|gb|EAL45413.1| transcription initiation factor IIIB chain BRF, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449709301|gb|EMD48588.1| transcription initiation factor IIIB chain BRF, putative [Entamoeba
histolytica KU27]
Length = 546
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 110/398 (27%), Positives = 181/398 (45%), Gaps = 58/398 (14%)
Query: 2 RQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF 57
RQM+ +GE ++ + +R Y +A+ TKGR+ +CLY+ CR++
Sbjct: 85 RQMRAIKKVGEMLKMKSIDIESGQRLYRVAMQTGITKGRKFSYSAGACLYIICRRERSDH 144
Query: 58 LLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKV 117
LLIDF++ L+++V LG +++ C+ L L VDP ++L +F + L V
Sbjct: 145 LLIDFADVLHVSVRRLGRTFIRFCEELKFD-----LPFVDPCLYLQRFGEDLSFEKTGDV 199
Query: 118 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
TA I M RDW+ GR+PSG+CG ALY++ HG + +IV +V + T+ R
Sbjct: 200 VRTAMRICQRMNRDWMHYGRRPSGICGVALYLAGRLHGEPRTLEEIVHVVRLSTTTVRVR 259
Query: 178 LIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGL 237
L EF T S LT+E +L+E + P+ P +N + K ++T
Sbjct: 260 LKEFLRTPSADLTLE-------QLNEDDQST-PHCNPPSYTLNRLKDKARET-------- 303
Query: 238 CRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQS 297
GA+ P + + + A E+ E ++ V K+
Sbjct: 304 ----------------VGANVPLKK--RKGNGDEYEAAEDKKLTEEIETLIGGEVSKIMG 345
Query: 298 -----PEPESIGVPKNCTTQTASNEGEG-------DHTKTPGVDATTEASD-GSDNFSDI 344
+P ++G + + + EGE D K D +E D G D
Sbjct: 346 CKDIDSKPLNLGTLEGKSAKDVGLEGEHFDVEKLVDINKMKEEDFESEGIDEGECVVGDC 405
Query: 345 DDF--EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 380
+F E+DGY +++E +K IWEE+N E+LE++ +
Sbjct: 406 SEFDNELDGYFLDDKEAEKRKQIWEELNAEFLEKEKKR 443
>gi|295660722|ref|XP_002790917.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226281169|gb|EEH36735.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 800
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 140 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 197
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 198 FADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGTSMMQVASE 257
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 258 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 317
Query: 181 FENTDSGSLTIEDF 194
F+ T+SG LT++ F
Sbjct: 318 FKATESGELTVDQF 331
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 346 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 405
D EV L + E K+ IW N++YL Q AK A K AL A
Sbjct: 494 DPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRAL-------------A 535
Query: 406 QELAAAAAAAVAKSRKEKQQKRAAEA--------------KNSGPAQTALEATRRMLTKK 451
+E VA +++++ R + A T EATRRML K+
Sbjct: 536 EEEELVNGRRVANRPRKRRKGRMGDVGYLGEGNGEGGEGEGGGTRASTPAEATRRMLEKR 595
Query: 452 RLSSKINYDVLEKLFDD 468
S KINY +LE++++D
Sbjct: 596 GFSKKINYRLLEEMYED 612
>gi|297298726|ref|XP_001098066.2| PREDICTED: transcription factor IIIB 90 kDa subunit [Macaca
mulatta]
Length = 621
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 107/178 (60%), Gaps = 8/178 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KR
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKR 263
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 62/159 (38%), Gaps = 49/159 (30%)
Query: 329 DATTEASDGSDNFSDIDDFEVD----------------------GYLHNEEEKHYKKIIW 366
D + DG + S IDD E+D Y+ NE E K +W
Sbjct: 359 DPKDASGDGELDLSGIDDLEIDRHDLSTPWCAKAKSQPHFPVLAQYILNESEARVKAELW 418
Query: 367 EEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQK 426
N EYL EQ KEA A K EL KE + K
Sbjct: 419 MRENAEYLREQREKEARIAKEK------------------ELGIY---------KEHKPK 451
Query: 427 RAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 452 KSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 490
>gi|303389255|ref|XP_003072860.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon intestinalis ATCC 50506]
gi|303302003|gb|ADM11500.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon intestinalis ATCC 50506]
Length = 395
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 131/227 (57%), Gaps = 26/227 (11%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
V + R+Y + + N +KG+ ++C+Y+ CRQ+ P +L+DFSN L+I+V+++G
Sbjct: 91 VECSFRWYKLLLQYNLSKGKSILYTLSACIYIVCRQERTPHMLMDFSNALHIDVFKIGKS 150
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+L++ +L I + +DPS+++ +F RL + +V + +++ MKRDWI G
Sbjct: 151 FLKITNMLGID-----IPLIDPSLYMPRFVSRL-RFESTEVLGLSLRLISRMKRDWIVVG 204
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF-- 194
R+P+ LCGAAL +++ G + S +I KIVH+ +T+ KRL E +T+S +L+IE+F
Sbjct: 205 RRPNNLCGAALLIASRIVGEERSIYEIAKIVHVSVSTINKRLKEIGDTESANLSIEEFNA 264
Query: 195 ------------------MARKKELHEGVAANLPNNGPKVSGMNEVL 223
MA+K+E G + +P + P+ S +E+L
Sbjct: 265 TWIEKEEDPPAVKMKRMEMAKKQECESGSSEVIPYSTPQSSVDSEIL 311
>gi|226289115|gb|EEH44627.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 776
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 112 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 169
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 170 FADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGTSMMQVASE 229
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 230 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 289
Query: 181 FENTDSGSLTIEDF 194
F+ T+SG LT++ F
Sbjct: 290 FKATESGELTVDQF 303
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 32/137 (23%)
Query: 346 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 405
D EV L + E K+ IW N++YL Q AK A K AL A
Sbjct: 466 DPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRAL-------------A 507
Query: 406 QELAAAAAAAVAKSRKEKQQKRAAEA--------------KNSGPAQTALEATRRMLTKK 451
+E VA +++++ R + A T EA R+ML K+
Sbjct: 508 EEEELVNGRRVANRPRKRRKGRMGDVGYLGEGNGEGGEGEGGGTRASTPAEAMRKMLEKR 567
Query: 452 RLSSKINYDVLEKLFDD 468
S KINY +LE++++D
Sbjct: 568 GFSKKINYRLLEEMYED 584
>gi|258563476|ref|XP_002582483.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907990|gb|EEP82391.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 791
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 138 QLSRALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAICLYVACRRQDGNTVMLID 195
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 196 FADVLMINVFKLGRTYKALLDELRLGGNIFIMNPIDPESLIYRFAKQLEFGPSMMQVASE 255
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 256 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 315
Query: 181 FENTDSGSLTIEDF 194
F+ T+SG LT++ F
Sbjct: 316 FKATESGDLTVDQF 329
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 95/243 (39%), Gaps = 48/243 (19%)
Query: 244 EFMTISEGLEGGADPPAFQVAERERMVKASAEEN----SSFERESDSPFMSRVDKVQSPE 299
+ T S G D P + +++ + EE+ S+ E E + S V S
Sbjct: 412 QLSTESNTTTSGTDKPKQPKSNKKQQIPEPTEEDLASESALESEMTALLSSGSSLVASAG 471
Query: 300 PESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSD-NFSDID-DFEVDGYLHNEE 357
P P N + +A +G+ SD D + ++ D D EV L +
Sbjct: 472 PPKTTPPSNAESSSAKRQGK-------------PVSDSQDIDPAEFDSDPEVRHCLLSPT 518
Query: 358 EKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVA 417
E K+ IW N++YL Q AK A A A + A
Sbjct: 519 EVEIKERIWVHENKDYLRAQQAKALKRALAAAD-------------------PSTAGGAH 559
Query: 418 KSRKEKQQK------RAAEA----KNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 467
K RK ++ + A E + S A T EATR ML ++ S KINY +LEKL++
Sbjct: 560 KPRKRRKGRIGDVTYLAGEGGDGDRASSRASTPAEATRLMLERRGFSKKINYSLLEKLYE 619
Query: 468 DSV 470
D V
Sbjct: 620 DDV 622
>gi|401826311|ref|XP_003887249.1| putative transcription initiation factor TFIIIB [Encephalitozoon
hellem ATCC 50504]
gi|392998408|gb|AFM98268.1| putative transcription initiation factor TFIIIB [Encephalitozoon
hellem ATCC 50504]
Length = 395
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 130/227 (57%), Gaps = 26/227 (11%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
V + R+Y + + N +KG+ ++C+Y+ CRQ+ P +L+DFSN L+I+V+++G
Sbjct: 91 VECSFRWYKLLLQYNLSKGKSILYTLSACIYIVCRQEKTPHMLMDFSNALHIDVFKIGKS 150
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+L++ +L I + +DPS+++ +F RL + +V + +++ MKRDWI G
Sbjct: 151 FLKITSMLGIE-----IPLIDPSLYMPRFVSRL-RFESSEVLGLSLRLISRMKRDWIVVG 204
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF-- 194
R+P+ LCGAAL +++ G + S +I KIVH+ +T+ KRL E +T+S +L+IE+F
Sbjct: 205 RRPNNLCGAALLIASRIVGEERSIYEIAKIVHVSVSTINKRLKEIGDTESANLSIEEFNA 264
Query: 195 ------------------MARKKELHEGVAANLPNNGPKVSGMNEVL 223
MA+K+E G + +P + P+ S +E L
Sbjct: 265 TWIEKEEDPPSVKVKRMEMAKKQECESGSSEMIPYSTPQSSVDSEAL 311
>gi|300708839|ref|XP_002996591.1| hypothetical protein NCER_100286 [Nosema ceranae BRL01]
gi|239605905|gb|EEQ82920.1| hypothetical protein NCER_100286 [Nosema ceranae BRL01]
Length = 282
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 9 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 68
N+G + + R+Y + + N +KG+ ++C+Y+ CR++ P LLIDFSN LNI
Sbjct: 82 NMGLGSNFLDCSYRYYRLLLPYNLSKGKSILYTLSACVYIVCREEKTPHLLIDFSNALNI 141
Query: 69 NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 128
+V+++G + ++ +VL + + VDP++++ ++ +L N+K+ A I++ M
Sbjct: 142 DVFKIGKSFTKIVEVLNLN-----IPNVDPTLYIQRYIVKL-NLKNQKIPTLALRIMSRM 195
Query: 129 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGS 188
RDWITTGR+P+ +CGAA+ +++ + + S S++ K+VH+ E L KRL+E ++T +
Sbjct: 196 SRDWITTGRRPNNICGAAILIASRVYNEERSLSEVAKVVHVSEFILKKRLLEIQDTQTAD 255
Query: 189 LTIEDF 194
L++ F
Sbjct: 256 LSVNQF 261
>gi|71003944|ref|XP_756638.1| hypothetical protein UM00491.1 [Ustilago maydis 521]
gi|46095578|gb|EAK80811.1| hypothetical protein UM00491.1 [Ustilago maydis 521]
Length = 765
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 121/206 (58%), Gaps = 19/206 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAV-----------ARNFTKGRRTEQVQASCLYLA 49
+ M +AL I + A RF+ +A+ +N+ GR++E ASCLY+A
Sbjct: 88 INNMASALRI--PSHVADRALRFFTLALDGGASAATGEEPKNYVLGRKSEYTVASCLYVA 145
Query: 50 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 109
CR + +LIDF++ + +NV+ LG YL+L +VL + L +DPSI++ +F L
Sbjct: 146 CRMEKTTHMLIDFADAIQVNVFILGRSYLKLIRVLNLR-----LPLIDPSIYIARFAALL 200
Query: 110 LPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 168
G +KV A +++ ++DWIT GR+P+G+CGA L ++A + + S S+++++V
Sbjct: 201 DFGEETQKVAYDASRLVSRFQKDWITEGRRPAGICGACLMLAARMNHFRRSVSEVIQVVK 260
Query: 169 ICEATLMKRLIEFENTDSGSLTIEDF 194
I + TL RL EF+ T +G L+++DF
Sbjct: 261 IADVTLKARLEEFKKTPTGQLSVQDF 286
>gi|440493061|gb|ELQ75570.1| Transcription initiation factor TFIIIB, Brf1 subunit, partial
[Trachipleistophora hominis]
Length = 429
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 117/194 (60%), Gaps = 7/194 (3%)
Query: 3 QMKNAL-NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 61
Q+KN ++G SDE+ A R+Y +++ N T+GR ++C+Y+ CRQ+ P LLID
Sbjct: 98 QIKNICGSLGLSDEVAQSAYRWYKLSLQGNLTRGRNILYTLSACIYIVCRQEKTPHLLID 157
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
F+ L+++V+++G +++++ L + + +DPS+FLH+F + L N K+ A
Sbjct: 158 FAQLLDLDVFKIGNIFMRIVVFLNVK-----VPLIDPSLFLHRFFSK-LKLKNGKILLFA 211
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+++ MKRDWI GR+P+ LCGAAL ++ + + S ++ K V + T+ RL E
Sbjct: 212 MRLISRMKRDWIVVGRRPNNLCGAALVTASRVYAEERSVLEVAKAVKVSPHTINIRLKEM 271
Query: 182 ENTDSGSLTIEDFM 195
+T S +LT+ DF
Sbjct: 272 CDTQSANLTVNDFF 285
>gi|212527540|ref|XP_002143927.1| transcription factor TFIIIB complex subunit Brf1, putative
[Talaromyces marneffei ATCC 18224]
gi|210073325|gb|EEA27412.1| transcription factor TFIIIB complex subunit Brf1, putative
[Talaromyces marneffei ATCC 18224]
Length = 744
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 126/217 (58%), Gaps = 8/217 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 59
++QM AL+I ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 158 IQQMALALDIPESAQ--KAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQPGNTVML 215
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVC 118
ID S+ L INV+++G Y L + L + + VDP + +F +L G V
Sbjct: 216 IDLSDVLMINVFKVGRAYKMLLEELRLGGTVFTMNPVDPENLILRFAKQLEFGNRTMHVA 275
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 276 KEAARIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEVTINQRL 335
Query: 179 IEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPK 215
EF +TDSG LT++ F + +H A + P+ PK
Sbjct: 336 NEFSSTDSGGLTVDQF----RSVHLETAHDPPSFNPK 368
>gi|6634765|gb|AAF19745.1|AC009917_4 Contains a Transcription factor TFIIB repeat PF|00382 [Arabidopsis
thaliana]
Length = 294
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 85/113 (75%), Gaps = 1/113 (0%)
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 141
+LY+ + VDPS F+ +F+++LL G NK+V +TA I+ASMK +W+ TGRKPSG
Sbjct: 1 MLYLTENRKYENLVDPSTFIPRFSNKLLKGAHNKQVVETATHIIASMKSNWMQTGRKPSG 60
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
+CGAALY +AL+HG+K SK+DI IV+ICEATL KRLIEF NT++ S T ++
Sbjct: 61 ICGAALYTAALSHGIKCSKTDITNIVYICEATLTKRLIEFGNTEAASFTADEL 113
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 94/217 (43%), Gaps = 72/217 (33%)
Query: 254 GGADPPAFQVAERERMV-KASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQ 312
G+DPP+FQ AE+ERM KAS EEN DK Q+
Sbjct: 114 SGSDPPSFQRAEKERMEEKASTEEN---------------DKQQN--------------- 143
Query: 313 TASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNRE 372
SD S SD+DD E+D Y N +E H +II++ N
Sbjct: 144 ----------------------SDESSTLSDLDDGELDCYFRNPKEVHLVEIIFDHENPG 181
Query: 373 YLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAK 432
Y E++AA A A EAS AA AKSRK+K+Q+RA E K
Sbjct: 182 YDEKEAAALNACNNASNLFEAS------------------KAAAAKSRKDKRQQRAEEEK 223
Query: 433 NSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 469
N+ P TA+EA M+ +K+ N D LE+L D S
Sbjct: 224 NAPPPATAMEAVDSMVKRKKFPD-TNCDYLEELLDTS 259
>gi|396081366|gb|AFN82983.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon romaleae SJ-2008]
Length = 395
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 130/227 (57%), Gaps = 26/227 (11%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
V + R+Y + + N +KG+ ++C+Y+ CRQ+ P +L+DFSN L+I+V+++G
Sbjct: 91 VECSFRWYKLLLQYNLSKGKSILYTLSACIYIVCRQEKTPHMLMDFSNALHIDVFKIGKS 150
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+L++ +L I + +DPS+++ +F RL + +V + +++ MKRDWI G
Sbjct: 151 FLKITTMLGID-----IPLIDPSLYMPRFVSRL-RFESSEVLGLSLRLISRMKRDWIVVG 204
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF-- 194
R+P+ LCGAAL +++ G + S +I KIVH+ +T+ KRL E +T+S +L+IE+F
Sbjct: 205 RRPNNLCGAALLIASRIVGEERSIYEIAKIVHVSVSTINKRLKEIGDTESANLSIEEFNA 264
Query: 195 ------------------MARKKELHEGVAANLPNNGPKVSGMNEVL 223
MA+K+E G +P + P+ S +++L
Sbjct: 265 TWIDKEEDPPSVKLRRMEMAKKQECESGSTETVPYSTPQSSIDSDIL 311
>gi|321260370|ref|XP_003194905.1| transcription factor iiib 70 kd subunit [Cryptococcus gattii WM276]
gi|317461377|gb|ADV23118.1| transcription factor iiib 70 kd subunit, putative [Cryptococcus
gattii WM276]
Length = 696
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 106/184 (57%), Gaps = 6/184 (3%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
S I A RF+ +AV F +GR+T+ + ASCLYL CR K +LIDFS + INV+E
Sbjct: 100 SSAITRGAIRFFSLAVDNKFNRGRKTDYIIASCLYLQCRLKKDAHMLIDFSEHKGINVFE 159
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG--NKKVCDTARDILASMKR 130
LGA YL+L L + D + +VDP+I+ +F RL G N D +R ++ +
Sbjct: 160 LGATYLKLRSTLNLLDP---MPEVDPAIYNLRFAHRLNFGAQVNTVAADASR-LVRRFRA 215
Query: 131 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 190
DW+T GR+P+G+CGA L ++ + ++ ++V + T+ KRL+EF TD T
Sbjct: 216 DWMTQGRRPAGVCGACLIIAGRMSNFLRTPDEVAQVVKVHPNTIKKRLLEFAQTDMAKKT 275
Query: 191 IEDF 194
+ ++
Sbjct: 276 VGEW 279
>gi|58268656|ref|XP_571484.1| transcription factor iiib 70 kd subunit [Cryptococcus neoformans
var. neoformans JEC21]
gi|57227719|gb|AAW44177.1| transcription factor iiib 70 kd subunit, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 691
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 106/184 (57%), Gaps = 6/184 (3%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
S I A RF+ +AV F +GR+T+ + ASCLYL CR K +LIDFS + INV+E
Sbjct: 100 SSAITRGAIRFFSLAVDNKFNRGRKTDYIIASCLYLQCRLKKDAHMLIDFSEHKGINVFE 159
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG--NKKVCDTARDILASMKR 130
LGA YL+L L + D + +VDP+I+ +F RL G N D +R ++ +
Sbjct: 160 LGATYLKLRSTLNLLDP---MPEVDPAIYNLRFAHRLNFGAQVNTVAADASR-LVRRFRA 215
Query: 131 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 190
DW+T GR+P+G+CGA L ++ + ++ ++V + T+ KRL+EF TD T
Sbjct: 216 DWMTQGRRPAGVCGACLIIAGRMSNFLRTPDEVAQVVKVHPNTIKKRLLEFAQTDMAKKT 275
Query: 191 IEDF 194
+ ++
Sbjct: 276 VGEW 279
>gi|134113394|ref|XP_774722.1| hypothetical protein CNBF4010 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257366|gb|EAL20075.1| hypothetical protein CNBF4010 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 694
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 106/184 (57%), Gaps = 6/184 (3%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
S I A RF+ +AV F +GR+T+ + ASCLYL CR K +LIDFS + INV+E
Sbjct: 100 SSAITRGAIRFFSLAVDNKFNRGRKTDYIIASCLYLQCRLKKDAHMLIDFSEHKGINVFE 159
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG--NKKVCDTARDILASMKR 130
LGA YL+L L + D + +VDP+I+ +F RL G N D +R ++ +
Sbjct: 160 LGATYLKLRSTLNLLDP---MPEVDPAIYNLRFAHRLNFGAQVNTVAADASR-LVRRFRA 215
Query: 131 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 190
DW+T GR+P+G+CGA L ++ + ++ ++V + T+ KRL+EF TD T
Sbjct: 216 DWMTQGRRPAGVCGACLIIAGRMSNFLRTPDEVAQVVKVHPNTIKKRLLEFAQTDMAKKT 275
Query: 191 IEDF 194
+ ++
Sbjct: 276 VGEW 279
>gi|388852063|emb|CCF54239.1| related to BRF1-TFIIIB subunit, 70 kD [Ustilago hordei]
Length = 760
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 107/166 (64%), Gaps = 6/166 (3%)
Query: 30 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 89
+N+ GR++E ASCLY+ACR + +LIDF++ + +NV+ LG YL+L +VL +
Sbjct: 126 KNYVLGRKSEYTVASCLYVACRMEKTTHMLIDFADAIQVNVFILGRSYLKLIRVLNLR-- 183
Query: 90 SNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALY 148
L +DPSI++ +F L G +KV A +++ ++DWIT GR+P+G+CGA L
Sbjct: 184 ---LPLIDPSIYIARFAALLDFGEETQKVAYDASRLVSRFQKDWITEGRRPAGICGACLM 240
Query: 149 VSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
++A + + S S+I+++V I + TL RL EF+ T +G L+++DF
Sbjct: 241 LAARMNHFRRSVSEIIQVVKIADVTLKARLEEFKKTPTGQLSVQDF 286
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 22/128 (17%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D+ +D+D+ E+D ++ + EE K+ +W E N++++E+ K+
Sbjct: 498 DDLADLDEEELDRFILSPEEVKIKERVWMEFNKDWMEQTLKKQLK--------------- 542
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 458
L+ Q++ + + K K+ K +A + +A E+ + ML +K+ S KIN
Sbjct: 543 ---LEHDQKM----GVPIREPYKRKKPKAPRDASTAMHNTSAAESAKMMLKQKQFSKKIN 595
Query: 459 YDVLEKLF 466
YD L LF
Sbjct: 596 YDALNNLF 603
>gi|398408149|ref|XP_003855540.1| hypothetical protein MYCGRDRAFT_37171 [Zymoseptoria tritici IPO323]
gi|339475424|gb|EGP90516.1| hypothetical protein MYCGRDRAFT_37171 [Zymoseptoria tritici IPO323]
Length = 730
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 116/190 (61%), Gaps = 7/190 (3%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNI 68
+G +D + A + + +A NF+ GR+T++V A+CLY ACR Q + LL+D + ++I
Sbjct: 127 LGITDNVSVQANQIWTLAANINFSAGRKTDEVVAACLYAACRRQTNNQILLMDIAELVHI 186
Query: 69 NVYELGAVYLQLCQVLYIADES---NVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDI 124
NV+ LG VY +C+ LYI +E+ L +++P +HK+ ++L K+V + A I
Sbjct: 187 NVFRLGEVYKDMCKELYINNENIGHQHLIELEP--LIHKYCEKLQFAEKTKQVAEDALKI 244
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184
+ M RDWI +GR P+GLCGA + ++A + + S ++V + + + T+ KR+ EF T
Sbjct: 245 IKRMNRDWIVSGRHPAGLCGACIILAARMNNFQRSVREVVYVSKVADVTIAKRIEEFRVT 304
Query: 185 DSGSLTIEDF 194
S SLT++ F
Sbjct: 305 KSASLTVQLF 314
>gi|327294325|ref|XP_003231858.1| transcription factor TFIIIB complex subunit brf1 [Trichophyton
rubrum CBS 118892]
gi|326465803|gb|EGD91256.1| transcription factor TFIIIB complex subunit brf1 [Trichophyton
rubrum CBS 118892]
Length = 876
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 116/194 (59%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALNI ES + + +AV NF +GRRT+ V A LY+ACR Q +LID
Sbjct: 160 QLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYIACRRQDGNTIMLID 217
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F+ +L G +V
Sbjct: 218 FADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSKQLEFGPAMMQVASE 277
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 278 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 337
Query: 181 FENTDSGSLTIEDF 194
F+ T+SG LT+++F
Sbjct: 338 FKATESGGLTVDEF 351
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 345 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 404
DD EV L + E K+ IW N++YL Q AK A KA EA G
Sbjct: 556 DDPEVQFCLLSPAEVEIKERIWVHENKDYLRTQQAK----ALRKALAEAGSDPSRSGAHR 611
Query: 405 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 464
++ V +E + S A T EATR ML ++ S KINY + E+
Sbjct: 612 PRKRRKGRIGDVTYLSRESKNADGESVAGSR-ASTPAEATRLMLERRGFSKKINYQLFEQ 670
Query: 465 LFDDS 469
++ D+
Sbjct: 671 MYGDN 675
>gi|296822208|ref|XP_002850247.1| transcription factor tfiiib complex subunit brf1 [Arthroderma otae
CBS 113480]
gi|238837801|gb|EEQ27463.1| transcription factor tfiiib complex subunit brf1 [Arthroderma otae
CBS 113480]
Length = 877
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 116/194 (59%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALNI ES + + +AV NF +GRRT+ V A LY+ACR Q +LID
Sbjct: 156 QLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYIACRRQDGNTVMLID 213
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F+ +L G +V
Sbjct: 214 FADVLMINVFKLGRAYKALLDELRLGGNHFIMNPIDPESLIYRFSKQLEFGPAMMQVASE 273
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 274 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 333
Query: 181 FENTDSGSLTIEDF 194
F+ T+SG LT+++F
Sbjct: 334 FKATESGGLTVDEF 347
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 345 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 404
DD EV L + E K+ IW N++YL Q AK A A+A +AS P G +
Sbjct: 557 DDPEVQFCLLSPAEVEIKERIWVHENKDYLRTQQAKALRKALAEAGSDASR---PGGHRP 613
Query: 405 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 464
+ S + K E+ A T EATR ML ++ S KINY + E+
Sbjct: 614 RKRRKGRMGDVTYLSGEGKNAD--GESVAGSRASTPAEATRLMLERRGFSKKINYQLFEQ 671
Query: 465 LFDD 468
++ D
Sbjct: 672 MYGD 675
>gi|315056331|ref|XP_003177540.1| transcription factor TFIIIB complex subunit brf1 [Arthroderma
gypseum CBS 118893]
gi|311339386|gb|EFQ98588.1| transcription factor TFIIIB complex subunit brf1 [Arthroderma
gypseum CBS 118893]
Length = 877
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 116/194 (59%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALNI ES + + +AV NF +GRRT+ V A LY+ACR Q +LID
Sbjct: 160 QLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYIACRRQDGNTVMLID 217
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F+ +L G +V
Sbjct: 218 FADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSKQLEFGPAMMQVASE 277
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 278 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 337
Query: 181 FENTDSGSLTIEDF 194
F+ T+SG LT+++F
Sbjct: 338 FKATESGGLTVDEF 351
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 68/171 (39%), Gaps = 17/171 (9%)
Query: 311 TQTASNEGEGDH----TKTPGVDATTEASDGSDNFSDI--------DDFEVDGYLHNEEE 358
T T + + DH T T D+TT SDI DD EV L + E
Sbjct: 511 TSTTNGDNGTDHQNAETNTAADDSTTPPQTQQPVSSDIEINPLEFEDDPEVQFCLLSPAE 570
Query: 359 KHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAK 418
K+ IW N++YL Q AK A KA EA G ++ V
Sbjct: 571 VEIKERIWVHENKDYLRTQQAK----ALRKALAEAGSDPSRSGAHRPRKRRKGRIGDVTY 626
Query: 419 SRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 469
E + S A T EATR ML ++ S KINY + E+++ D+
Sbjct: 627 LSGESKNADGESVAGSR-ASTPAEATRLMLERRGFSKKINYQLFEQMYGDN 676
>gi|302503376|ref|XP_003013648.1| hypothetical protein ARB_00095 [Arthroderma benhamiae CBS 112371]
gi|291177213|gb|EFE33008.1| hypothetical protein ARB_00095 [Arthroderma benhamiae CBS 112371]
Length = 878
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 116/194 (59%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALNI ES + + +AV NF +GRRT+ V A LY+ACR Q +LID
Sbjct: 160 QLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYIACRRQDGNTVMLID 217
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F+ +L G +V
Sbjct: 218 FADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSKQLEFGPAMMQVASE 277
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 278 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 337
Query: 181 FENTDSGSLTIEDF 194
F+ T+SG LT+++F
Sbjct: 338 FKATESGGLTVDEF 351
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 73/177 (41%), Gaps = 7/177 (3%)
Query: 294 KVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI-DDFEVDGY 352
++ P+P G K+ Q + + D + TP +SD N + DD EV
Sbjct: 505 EITQPKPTDDGD-KDADHQNTEPDADTDVSTTPPKPQQPVSSDVEINPLEFEDDPEVQFC 563
Query: 353 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAA 412
L + E K+ IW N++YL Q AK A KA EA G ++
Sbjct: 564 LLSPAEVEIKERIWVHENKDYLRTQQAK----ALRKALAEAGSDPSRSGAHRPRKRRKGR 619
Query: 413 AAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 469
V E + S A T EATR ML ++ S KINY + E+++ D+
Sbjct: 620 IGDVTYLSGESKNADGESVAGSR-ASTPAEATRLMLERRGFSKKINYQLFEQMYGDN 675
>gi|302666612|ref|XP_003024903.1| hypothetical protein TRV_00908 [Trichophyton verrucosum HKI 0517]
gi|291188980|gb|EFE44292.1| hypothetical protein TRV_00908 [Trichophyton verrucosum HKI 0517]
Length = 878
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 116/194 (59%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALNI ES + + +AV NF +GRRT+ V A LY+ACR Q +LID
Sbjct: 160 QLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYIACRRQDGNTVMLID 217
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F+ +L G +V
Sbjct: 218 FADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSKQLEFGPAMMQVASE 277
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 278 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 337
Query: 181 FENTDSGSLTIEDF 194
F+ T+SG LT+++F
Sbjct: 338 FKATESGGLTVDEF 351
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 345 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 404
DD EV L + E K+ IW N++YL Q AK A KA EA G
Sbjct: 556 DDPEVQFCLLSPAEVEIKERIWVHENKDYLRTQQAK----ALRKALAEAGSDPSRSGAHR 611
Query: 405 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 464
++ V E + S A T EATR ML ++ S KINY + E+
Sbjct: 612 PRKRRKGRIGDVTYLSGESKNADGESVAGSR-ASTPAEATRLMLERRGFSKKINYQLFEQ 670
Query: 465 LFDDS 469
++ D+
Sbjct: 671 MYGDN 675
>gi|326480366|gb|EGE04376.1| transcription factor TFIIIB complex subunit brf1 [Trichophyton
equinum CBS 127.97]
Length = 881
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 116/194 (59%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALNI ES + + +AV NF +GRRT+ V A LY+ACR Q +LID
Sbjct: 160 QLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYIACRRQDGNTVMLID 217
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F+ +L G +V
Sbjct: 218 FADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSKQLEFGPAMMQVASE 277
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 278 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 337
Query: 181 FENTDSGSLTIEDF 194
F+ T+SG LT+++F
Sbjct: 338 FKATESGGLTVDEF 351
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 78/188 (41%), Gaps = 29/188 (15%)
Query: 294 KVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI-DDFEVDGY 352
++ P+P G K+ Q + D++ TP +SD N + DD EV
Sbjct: 502 EIAQPKPTDDGD-KDADHQNTEPNADTDNSTTPPKSQQPVSSDVEINPLEFEDDPEVQFC 560
Query: 353 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC--PEGLQAAQ---- 406
L + E K+ IW N++YL Q AK A A+A +AS P + +
Sbjct: 561 LLSPAEVEIKERIWVHENKDYLRTQQAKALRKALAEAGSDASRSGAHRPRKRRKGRIGDV 620
Query: 407 -----ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDV 461
E A +VA SR A T EATR ML ++ S KINY +
Sbjct: 621 TYLSGETKNADGESVAGSR----------------ASTPAEATRLMLERRGFSKKINYQL 664
Query: 462 LEKLFDDS 469
E+++ D+
Sbjct: 665 FEQMYGDN 672
>gi|449329122|gb|AGE95396.1| transcription initiation factor tfIII b subunit [Encephalitozoon
cuniculi]
Length = 395
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 115/180 (63%), Gaps = 6/180 (3%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
V + R+Y + + N +KG+ ++C+Y+ CRQ+ P +L+DFSN L+I+V+++G
Sbjct: 91 VECSFRWYKLLLQYNLSKGKSILYTLSACIYIVCRQERTPHMLMDFSNALHIDVFKIGKS 150
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+L++ +L I + +DPS+++ +F RL N+ + + R +++ MKRDWI G
Sbjct: 151 FLKITNILGID-----IPLIDPSLYMPRFVSRLRFESNEVLGLSLR-LISRMKRDWIVVG 204
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 196
R+P+ LCGAAL +++ G + S +I KIVH+ +T+ KRL E +T+S +L+IE+F A
Sbjct: 205 RRPNNLCGAALLIASRIVGEERSIYEIAKIVHVSVSTINKRLKEIGDTESANLSIEEFNA 264
>gi|326475285|gb|EGD99294.1| transcription factor TFIIIB complex subunit brf1 [Trichophyton
tonsurans CBS 112818]
Length = 881
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 116/194 (59%), Gaps = 4/194 (2%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALNI ES + + +AV NF +GRRT+ V A LY+ACR Q +LID
Sbjct: 160 QLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYIACRRQDGNTVMLID 217
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 120
F++ L INV++LG Y L L + ++ +DP +++F+ +L G +V
Sbjct: 218 FADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSKQLEFGPAMMQVASE 277
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 278 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 337
Query: 181 FENTDSGSLTIEDF 194
F+ T+SG LT+++F
Sbjct: 338 FKATESGGLTVDEF 351
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 78/188 (41%), Gaps = 29/188 (15%)
Query: 294 KVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI-DDFEVDGY 352
++ P+P G K+ Q + D++ TP +SD N + DD EV
Sbjct: 502 EIAQPKPTDDGD-KDADHQNTEPNADTDNSTTPPKSQQPVSSDVEINPLEFEDDPEVQFC 560
Query: 353 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC--PEGLQAAQ---- 406
L + E K+ IW N++YL Q AK A A+A +AS P + +
Sbjct: 561 LLSPAEVEIKERIWVHENKDYLRTQQAKALRKALAEAGSDASRSGAHRPRKRRKGRIGDV 620
Query: 407 -----ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDV 461
E A +VA SR A T EATR ML ++ S KINY +
Sbjct: 621 TYLSGETKNADGESVAGSR----------------ASTPAEATRLMLERRGFSKKINYQL 664
Query: 462 LEKLFDDS 469
E+++ D+
Sbjct: 665 FEQMYGDN 672
>gi|399949553|gb|AFP65211.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399949714|gb|AFP65372.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399949718|gb|AFP65375.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399949887|gb|AFP65544.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399949891|gb|AFP65547.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399950057|gb|AFP65713.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
Length = 427
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 113/193 (58%), Gaps = 10/193 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ Q NAL + S + A RF+ A R F + E V SCLY+ CR+K P LL+
Sbjct: 82 IHQFGNALKLKSSYQ--EEAYRFFVFAFQRGFVPAHKFESVCISCLYVVCRRKKTPHLLV 139
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC-- 118
DFS+ I Y++G ++L+ ++ ++ L DPS+F+++F RL GNK C
Sbjct: 140 DFSDLTQIQTYKIGGIFLKFIRIFHVH-----LPVADPSLFVYRFISRL-KIGNKFECIA 193
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
++ ++A MKR+W+ +GR+P+GLCGAA+ ++A HG++ ++ +I +I I + L RL
Sbjct: 194 RSSFRLIARMKREWMNSGRRPAGLCGAAILLAAKMHGIQKTQKEIGEIARIGDMALRTRL 253
Query: 179 IEFENTDSGSLTI 191
E E T +LT+
Sbjct: 254 REMETTSMANLTL 266
>gi|19173589|ref|NP_597392.1| TRANSCRIPTION INITIATION FACTOR TFIII B SUBUNIT (70kDa)
[Encephalitozoon cuniculi GB-M1]
gi|19170795|emb|CAD26569.1| TRANSCRIPTION INITIATION FACTOR TFIII B SUBUNIT (70kDa)
[Encephalitozoon cuniculi GB-M1]
Length = 395
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 115/180 (63%), Gaps = 6/180 (3%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
V + R+Y + + N +KG+ ++C+Y+ CRQ+ P +L+DFSN L+I+V+++G
Sbjct: 91 VECSFRWYKLLLQYNLSKGKSILYTLSACIYIVCRQERTPHMLMDFSNALHIDVFKIGKS 150
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+L++ +L I + +DPS+++ +F RL N+ + + R +++ MKRDWI G
Sbjct: 151 FLKITNMLGID-----IPLIDPSLYMPRFVSRLRFESNEVLGLSLR-LISRMKRDWIVVG 204
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 196
R+P+ LCGAAL +++ G + S +I KIVH+ +T+ KRL E +T+S +L+IE+F A
Sbjct: 205 RRPNNLCGAALLIASRIVGEERSIYEIAKIVHVSVSTINKRLKEIGDTESANLSIEEFNA 264
>gi|405121456|gb|AFR96225.1| transcription factor iiib 70 kd subunit [Cryptococcus neoformans
var. grubii H99]
Length = 684
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 106/184 (57%), Gaps = 6/184 (3%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
S I A RF+ +AV F +GR+T+ + ASCLYL CR K +LIDFS + INV+E
Sbjct: 100 SSAITRGAIRFFSLAVDNKFNRGRKTDYIIASCLYLQCRLKKDAHMLIDFSEHKGINVFE 159
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG--NKKVCDTARDILASMKR 130
LGA YL+L L + D + +VDP+I+ +F RL G N D +R ++ +
Sbjct: 160 LGATYLKLRSTLNLLDP---MPEVDPAIYNLRFAHRLNFGAQVNIVAADASR-LVRRFRA 215
Query: 131 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 190
DW+T GR+P+G+CGA L ++ + ++ ++V + T+ KRL+EF TD T
Sbjct: 216 DWMTQGRRPAGVCGACLIIAGRMSNFLRTPDEVAQVVKVHPNTIKKRLLEFAQTDMAKKT 275
Query: 191 IEDF 194
+ ++
Sbjct: 276 VGEW 279
>gi|67525317|ref|XP_660720.1| hypothetical protein AN3116.2 [Aspergillus nidulans FGSC A4]
gi|40744511|gb|EAA63687.1| hypothetical protein AN3116.2 [Aspergillus nidulans FGSC A4]
gi|259485934|tpe|CBF83378.1| TPA: transcription factor TFIIIB complex subunit Brf1, putative
(AFU_orthologue; AFUA_3G12730) [Aspergillus nidulans
FGSC A4]
Length = 713
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 110/177 (62%), Gaps = 2/177 (1%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVYELGAVYL 78
A + + +AV NF +GRRT+ V A CLY+ACR Q +LIDF++ L INV++LG Y
Sbjct: 121 AGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMINVFKLGRTYK 180
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGR 137
L L + ++ +DP +++F +L G + +V A I+ M RDW+TTGR
Sbjct: 181 ALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGPSTMQVASEAVRIVQRMNRDWMTTGR 240
Query: 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
+P+G+CGAAL ++A + + + ++V +V + E T+ +RL EF +T+SG LT++ F
Sbjct: 241 RPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRLNEFSSTESGELTVDQF 297
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 346 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 405
D EV L E K+ IW N++YL Q AK A K ALE + + G +
Sbjct: 461 DPEVSNCLLAPHEVEIKERIWVHENKDYLRTQQAK-----ALKRALEEA--DAQPGDRKP 513
Query: 406 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
++ V E + + S PA EATRRML ++ S KINY +LE L
Sbjct: 514 RKRRKGRLGDVRYLEGEGEDGDGRSTRASTPA----EATRRMLERRGFSKKINYRLLETL 569
Query: 466 F 466
F
Sbjct: 570 F 570
>gi|323508031|emb|CBQ67902.1| related to BRF1-TFIIIB subunit, 70 kD [Sporisorium reilianum SRZ2]
Length = 775
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 117/193 (60%), Gaps = 22/193 (11%)
Query: 18 HVAKR---FYGIAV-----------ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 63
HVA R F+ +A+ +N+ GR++E ASCLY+ACR + +LIDF+
Sbjct: 100 HVADRSLRFFTLALDGGASAATGDEPKNYVLGRKSEYTVASCLYVACRMEKTTHMLIDFA 159
Query: 64 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG--NKKVCDTA 121
+ + +NV+ LG YL+L +VL + L +DPSI++ +F LL G +KV A
Sbjct: 160 DAIQVNVFILGRSYLKLIRVLNLR-----LPLIDPSIYIARFA-ALLDFGEETQKVAYDA 213
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+++ ++DW+T GR+P+G+CGA L ++A + + S S+++++V I + TL RL +F
Sbjct: 214 SRLVSRFQKDWLTEGRRPAGICGACLMLAARMNHFRRSVSEVIQVVKIADVTLKARLEDF 273
Query: 182 ENTDSGSLTIEDF 194
+ T +G L+++DF
Sbjct: 274 KKTPTGQLSVQDF 286
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 22/128 (17%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D+ +D+D+ E+D ++ + EE K+ +W E N++++E+ K+
Sbjct: 504 DDLADLDEEELDRFILSPEEVKIKERVWMEFNKDWMEQMLKKQLK--------------- 548
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 458
L+ Q++ + + K K+ K +A + +A E+ + ML +K+ S KIN
Sbjct: 549 ---LEHDQKM----GVPIREPYKRKKPKAPRDASTAMHNTSAAESAKMMLKQKQFSKKIN 601
Query: 459 YDVLEKLF 466
YD L LF
Sbjct: 602 YDALNNLF 609
>gi|453083368|gb|EMF11414.1| hypothetical protein SEPMUDRAFT_150357 [Mycosphaerella populorum
SO2202]
Length = 889
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 109/179 (60%), Gaps = 5/179 (2%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ-KSKPFLLIDFSNYLNINVYELGAVYL 78
A++ + +A NF+ GRRT++V A+CLY ACR+ K LL+D + L INV+ LG VY
Sbjct: 142 AEQIWVLAANINFSAGRRTDEVVAACLYAACRRRKDNKVLLMDIAELLQINVFRLGEVYK 201
Query: 79 QLCQVLYIADESNVLKQ--VDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITT 135
+C+ LY+ADE NV Q V+ ++K+ D+L K V A I+ M RDWI +
Sbjct: 202 DMCRELYLADE-NVGTQHMVELEPLIYKYCDKLQFAEKTKDVAADALKIIRRMNRDWIVS 260
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
GR P+GLCGA + ++A + + + ++V + + + T+ KR+ EF T + L++++F
Sbjct: 261 GRHPAGLCGACIILAARMNNFQRTVREVVFVSKVADVTIAKRVEEFRRTKASGLSVDNF 319
>gi|452988988|gb|EME88743.1| hypothetical protein MYCFIDRAFT_107563, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 654
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 109/185 (58%), Gaps = 9/185 (4%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVYELG 74
+ A + + +A NF+ GR+T++V A+CLY ACR QK LL+D + + INV+ LG
Sbjct: 115 VAMQANQIWTLAANINFSAGRKTDEVVAACLYAACRRQKQNKVLLMDIAELVKINVFRLG 174
Query: 75 AVYLQLCQVLYIADESNVLKQ--VDPSIFLHKFTDRLLPGGNKKVCDTARD---ILASMK 129
VY +C+ LY +ES V +Q VD ++K+ D+L G K D A D I+ M
Sbjct: 175 EVYKDMCRELYFNNES-VGQQHLVDLEPLIYKYCDKLQFGS--KTQDVAADALKIIKRMN 231
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSL 189
RDWI +GR P+GLCGA + ++A + + + ++V + + + T+ KR+ EF T S L
Sbjct: 232 RDWIVSGRHPAGLCGACIILAARMNNFQRTVREVVFVSKVADITIAKRVEEFRRTKSAGL 291
Query: 190 TIEDF 194
T+E F
Sbjct: 292 TVEQF 296
>gi|270010202|gb|EFA06650.1| hypothetical protein TcasGA2_TC009573 [Tribolium castaneum]
Length = 458
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 182/383 (47%), Gaps = 55/383 (14%)
Query: 91 NVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 149
++ +VDP +++ +F +L G ++V +TA ++ MKRD I +GR+PSGLCGAAL +
Sbjct: 2 DITLEVDPCLYILRFAAKLEFGSKTQQVANTALRLVQRMKRDSIHSGRRPSGLCGAALLI 61
Query: 150 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANL 209
+A H S SDIVKIV + E+TL KRLIEF +T S +LT+E+FM V
Sbjct: 62 AARLHEFGRSASDIVKIVKVHESTLRKRLIEFGDTPSSALTLEEFMT--------VDLEE 113
Query: 210 PNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISE-----GLEGGADPPAFQVA 264
+ P + KD + L R EE +I+E ++ D
Sbjct: 114 EQDPPSFKA-----ARKKDKER-----LQRLMEEEAESITELQQEIEMQLNRDAKMKSRK 163
Query: 265 ERERMVKASAEENSSFERESDSPFMSRVDKVQSPE-PESIGVP-KNCTTQTASNEGEGDH 322
++ER + E N F RES ++++ + ++ E PE P K AS
Sbjct: 164 KKERDTEEIQETN-RFIRESTMGTINQIIQEEAIEDPEIAKEPVKELGPDIASMGLASSL 222
Query: 323 TKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEA 382
T + D F DIDD E+D Y+ +E E K IW + N +LEEQ K
Sbjct: 223 EDTSNAVQPPQPLDVDMTFDDIDDEELDSYIMSEHESQNKNAIWLKRNAAFLEEQKIK-- 280
Query: 383 AAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALE 442
E LQ +E + + EK+++R K GP +A E
Sbjct: 281 ----------------AEKLQKERE----------EGKPEKKKRRNVRRKPIGPTNSAGE 314
Query: 443 ATRRMLTKKRLSSKINYDVLEKL 465
A ++L +K++SSKINYDVL+ L
Sbjct: 315 AIEKILQEKKISSKINYDVLKSL 337
>gi|452839595|gb|EME41534.1| hypothetical protein DOTSEDRAFT_73820 [Dothistroma septosporum
NZE10]
Length = 876
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 108/182 (59%), Gaps = 11/182 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVYELGAVYL 78
A+ + +A NF+ GRRT++V A+CLY ACR QK LL+D + YL INV+ LG VY
Sbjct: 145 AESIWVMASNINFSAGRRTDEVVAACLYAACRRQKENQLLLMDIAEYLKINVFRLGEVYK 204
Query: 79 QLCQVLYIADES---NVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD---ILASMKRDW 132
L + LY+ +ES L +++P IF K+ +L G K D ++D I+ M RDW
Sbjct: 205 DLGKELYLNNESVGNQNLIELEPLIF--KYCQKLQFG--DKTNDVSQDALRIIRRMNRDW 260
Query: 133 ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIE 192
I +GR P+GLCGA + ++A + + S ++V + + + T+ KR+ EF T S L I
Sbjct: 261 IVSGRHPAGLCGACIILAARMNNFQRSVREVVYVSKVADVTIAKRVEEFRRTKSAGLNIS 320
Query: 193 DF 194
DF
Sbjct: 321 DF 322
>gi|269860898|ref|XP_002650166.1| transcription factor IIIB subunit [Enterocytozoon bieneusi H348]
gi|220066389|gb|EED43872.1| transcription factor IIIB subunit [Enterocytozoon bieneusi H348]
Length = 391
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 107/176 (60%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
+A ++Y + +A N +KG+ ++C+Y++CRQ++ P LLIDFSN L I++Y++G ++L
Sbjct: 96 IAFKWYKLCLANNLSKGKSILYTLSACIYISCRQEATPHLLIDFSNVLRIDMYQIGKIFL 155
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRK 138
++ + S + +D S++LH+F +L +K++ + IL MK+DWI GRK
Sbjct: 156 KIRNTFGLEFNSFDIGGIDMSLYLHRFVSQLKFKNSKEIILLSTRILNRMKKDWIMEGRK 215
Query: 139 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
P+ CGAA+ +++ G S+I KIVH +T+ KRL E T+S L I F
Sbjct: 216 PNNSCGAAILLASRILGEPKDISEIAKIVHAAPSTISKRLREISETESAMLNITKF 271
>gi|407927197|gb|EKG20097.1| Transcription factor TFIIB [Macrophomina phaseolina MS6]
Length = 714
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 6/206 (2%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 59
+R + +AL + D + A Y +A FT GRR + A CLY CR ++ +LL
Sbjct: 124 VRGLMSALRM-TGDNLESRAMNIYRLAARERFTHGRRPIVIAACCLYYICRTRQGNKYLL 182
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADES--NVLKQVDPSIFLHKFTDRLLPG--GNK 115
IDF+ + +NV++LG Y +L L+I+D S +V ++P + K+ D+L G G +
Sbjct: 183 IDFAEKIKLNVFKLGETYKELLGKLFISDPSKRDVYTALEPEPLIKKYVDKLEFGEAGGR 242
Query: 116 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 175
+V + A IL MKRDW+ GR+P+G+CGA + ++A + + + ++V +V + + T+
Sbjct: 243 RVAEDAVKILKRMKRDWMVDGRQPAGVCGACIILAARMNNFRRTVREVVYVVKVADMTIA 302
Query: 176 KRLIEFENTDSGSLTIEDFMARKKEL 201
KRL+EF T SG LT+ +F EL
Sbjct: 303 KRLVEFRRTQSGQLTVNEFREHFDEL 328
>gi|426378227|ref|XP_004055844.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Gorilla
gorilla gorilla]
Length = 473
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 167/405 (41%), Gaps = 123/405 (30%)
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 180 EFENTDSGSLTIEDFMA-------------------RKKEL------------------H 202
EFE+T + LTI++FM R K+L
Sbjct: 62 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 121
Query: 203 EGVAANLPNNGPKVSGMNEVLCKH---KDTGKPFACG---------------LCRSCYEE 244
+ + L N+ PK G L K +DT CG L + Y E
Sbjct: 122 DAIEIELENSRPKAKGGLASLAKDGSTEDTASSL-CGEEDTEDEELEAAASHLNKDLYRE 180
Query: 245 FMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFM-SRVDKVQSPEPESI 303
+ GGA S+E S E S P + S +D + P S+
Sbjct: 181 LL-------GGA--------------PGSSEAAGSPEWGSRPPALGSLLDPL--PTAASL 217
Query: 304 GVP---KNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKH 360
G+ + C + +S D + DG + S IDD E+D Y+ NE E
Sbjct: 218 GISDSIRECISSQSS-------------DPKDASGDGELDLSGIDDLEIDRYILNESEAR 264
Query: 361 YKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSR 420
K +W N EYL EQ KEA A K EL
Sbjct: 265 VKAELWMRENAEYLREQREKEARIAKEK------------------ELGIY--------- 297
Query: 421 KEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 298 KEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 342
>gi|406860061|gb|EKD13121.1| Brf1-like TBP-binding domain-containing protein [Marssonina brunnea
f. sp. 'multigermtubi' MB_m1]
Length = 964
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 115/202 (56%), Gaps = 9/202 (4%)
Query: 1 MRQMKNALN-----IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 55
+R+ +NA+ +G + + + + +A NF +GRR EQV A CLY ACR+ S
Sbjct: 124 LREGRNAIQGMGAQLGIRESTIQNGVQIFKLAAMNNFIQGRRMEQVAAVCLYSACRKDSP 183
Query: 56 -PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 114
+LIDF++ + NV++LG + +L + IA ++ V P + +F +L G
Sbjct: 184 CRIMLIDFADLVQTNVFKLGYTFKKLHDTIAIAKAG--IQPVLPEDLIFRFAQKLEFGNQ 241
Query: 115 -KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
KV + A ++ M DW+ GR+PSG+CGA L ++A + + + +++V IV + T
Sbjct: 242 MTKVAEDAVRMVQRMSLDWMVMGRRPSGVCGACLILAARMNNFRRTITEVVYIVKVTTHT 301
Query: 174 LMKRLIEFENTDSGSLTIEDFM 195
+ KRL EF+ T S +LT+EDF+
Sbjct: 302 IQKRLEEFKQTPSSALTVEDFL 323
>gi|449668786|ref|XP_002161156.2| PREDICTED: transcription factor IIIB 70 kDa subunit-like [Hydra
magnipapillata]
Length = 943
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 103/176 (58%), Gaps = 6/176 (3%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A F+ +A ++ FT GR+T V +CLYL R + P +L+D + + ++ LG V+L
Sbjct: 379 AYMFFKMAASKRFTVGRKTIYVVGACLYLVSRTEKTPHMLLDICDAIQCDIVVLGRVFLA 438
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRK 138
L + L I VDPS+++H+F +L G + +V A ILA MK+DWI GR+
Sbjct: 439 LARTLCID-----CPIVDPSLYIHRFAHQLDFGDKENEVSMAALRILARMKKDWIHLGRR 493
Query: 139 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
PS LCGAAL ++ + DIVK+V + + T+ KRL++F T +G LT ++F
Sbjct: 494 PSALCGAALIIAGKLFNFNVTMDDIVKLVRMSKTTVFKRLMDFSKTATGKLTTDEF 549
>gi|48735267|gb|AAH71637.1| BRF1 protein, partial [Homo sapiens]
Length = 486
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 173/381 (45%), Gaps = 63/381 (16%)
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+T
Sbjct: 9 NHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCEST 68
Query: 174 LMKRLIEFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGP 214
L KRL EFE+T + LTI++FM R K+L + ++ L
Sbjct: 69 LRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEG 128
Query: 215 KVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERERMVKA 272
++S + + + +P A G S ++ T + L G + E E + A
Sbjct: 129 EISSYQDAIEIELENSRPKAKGGLASLAKDGSTEDTASSLCG------EEDTEDEELEAA 182
Query: 273 SAEENSSFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTKTPGV 328
++ N RE + SPE P ++G + TA++ G D +
Sbjct: 183 ASHLNKDLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECIS 241
Query: 329 DATTEASDGSDN----FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 384
+++ D S + S IDD E+D Y+ NE E K +W N EYL EQ KEA
Sbjct: 242 SQSSDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARI 301
Query: 385 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 444
A K EL KE + K++ + + A TA EA
Sbjct: 302 AKEK------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAI 334
Query: 445 RRMLTKKRLSSKINYDVLEKL 465
+ML +K++SSKINY VL L
Sbjct: 335 EKMLEQKKISSKINYSVLRGL 355
>gi|449296571|gb|EMC92590.1| hypothetical protein BAUCODRAFT_77565 [Baudoinia compniacensis UAMH
10762]
Length = 809
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 112/190 (58%), Gaps = 5/190 (2%)
Query: 8 LNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYL 66
LNI +D+ A+R +G+A NFT GR T++V +CL+ ACR+ + LL+D ++
Sbjct: 130 LNI--TDDYSIQAQRLFGLAARLNFTSGRSTDEVVGACLFAACRKNPQNSVLLMDIADIF 187
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQ-VDPSIFLHKFTDRLLPGG-NKKVCDTARDI 124
+INV+ LG VY LC+ L E+ ++Q VD + K+ +L G + V + A I
Sbjct: 188 HINVFRLGEVYKNLCKDLCYHKENLPIQQLVDVEPLIQKYCRKLEFGTRTRDVAEDAVKI 247
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184
L M RDW+ TGR P+G+CGA + ++A + + S ++V + + + T+ KR+ EF T
Sbjct: 248 LKRMNRDWMVTGRHPAGICGACIILAARMNNFRRSVREVVYVAKVADMTIAKRIEEFRRT 307
Query: 185 DSGSLTIEDF 194
+ +L+++ F
Sbjct: 308 KASTLSVDQF 317
>gi|118401704|ref|XP_001033172.1| Transcription factor TFIIB repeat family protein [Tetrahymena
thermophila]
gi|89287519|gb|EAR85509.1| Transcription factor TFIIB repeat family protein [Tetrahymena
thermophila SB210]
Length = 582
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 4/163 (2%)
Query: 35 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN-VL 93
G A+ LY+A R + PFLL+DFS L IN+++L Y +L + L + + N L
Sbjct: 119 GSNIHHYSAAALYIALRFQKAPFLLMDFSEKLCINLFKLARCYRKLAKFLNVTLKLNERL 178
Query: 94 KQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 151
+DPSI++ +F ++L +K +V +TA +L MK DW++ GR+PS LCGAA+ ++A
Sbjct: 179 PSIDPSIYIPRFC-KMLEFNDKVDQVKETAIKLLKRMKLDWMSHGRRPSSLCGAAILIAA 237
Query: 152 LTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
HG K + S++ K+V++CE TL KRL EF+ TD LT E F
Sbjct: 238 RMHGFKRTTSEVCKVVYVCEETLRKRLEEFKETDVAKLTREKF 280
>gi|157128816|ref|XP_001655207.1| transcription factor IIIB 90 kDa subunit (TFIIIB90) [Aedes aegypti]
gi|108882162|gb|EAT46387.1| AAEL002427-PA [Aedes aegypti]
Length = 609
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 114/181 (62%), Gaps = 6/181 (3%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A F+ +A+ R+ T+GRR + A+C+Y+ CR + LLID S+ L I YELG
Sbjct: 106 IETACNFFKMALIRHLTRGRRNTHIYAACVYITCRTEGTSHLLIDISDVLQICCYELGRT 165
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITT 135
YL+L Q L I + +DP I++ ++ ++L +V TA+ ++ MK+D I +
Sbjct: 166 YLKLSQALCIN-----IPSIDPCIYIMRYANKLEFAEKTHEVSMTAQRLVQRMKKDSIHS 220
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+PSGLCGAAL ++A H + +DIV+IV I E+TL KRL+EF T S +LT+++FM
Sbjct: 221 GRRPSGLCGAALLLAARMHEFSRTPNDIVRIVKIHESTLRKRLVEFGETPSSALTLDEFM 280
Query: 196 A 196
+
Sbjct: 281 S 281
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 28/122 (22%)
Query: 348 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 407
E++GY+ EEE YK ++W ++ E+L+E KE A + EG
Sbjct: 428 EINGYIMTEEEARYKDMMWNRLHAEHLKEMKEKEERLAKERE----------EG------ 471
Query: 408 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 467
+ EK+++++A KN GP+ +A EA +ML +K++S+KINYD+L+ L D
Sbjct: 472 ------------KPEKKKRKSARKKNIGPSNSAGEAIEKMLQEKKISTKINYDILKTLTD 519
Query: 468 DS 469
+
Sbjct: 520 SA 521
>gi|157128814|ref|XP_001655206.1| transcription factor IIIB 90 kDa subunit (TFIIIB90) [Aedes aegypti]
gi|108882161|gb|EAT46386.1| AAEL002427-PB [Aedes aegypti]
Length = 644
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 114/181 (62%), Gaps = 6/181 (3%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A F+ +A+ R+ T+GRR + A+C+Y+ CR + LLID S+ L I YELG
Sbjct: 106 IETACNFFKMALIRHLTRGRRNTHIYAACVYITCRTEGTSHLLIDISDVLQICCYELGRT 165
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITT 135
YL+L Q L I + +DP I++ ++ ++L +V TA+ ++ MK+D I +
Sbjct: 166 YLKLSQALCIN-----IPSIDPCIYIMRYANKLEFAEKTHEVSMTAQRLVQRMKKDSIHS 220
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+PSGLCGAAL ++A H + +DIV+IV I E+TL KRL+EF T S +LT+++FM
Sbjct: 221 GRRPSGLCGAALLLAARMHEFSRTPNDIVRIVKIHESTLRKRLVEFGETPSSALTLDEFM 280
Query: 196 A 196
+
Sbjct: 281 S 281
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 28/120 (23%)
Query: 348 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 407
E++GY+ EEE YK ++W ++ E+L+E KE A + EG
Sbjct: 428 EINGYIMTEEEARYKDMMWNRLHAEHLKEMKEKEERLAKERE----------EG------ 471
Query: 408 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 467
+ EK+++++A KN GP+ +A EA +ML +K++S+KINYD+L+ L D
Sbjct: 472 ------------KPEKKKRKSARKKNIGPSNSAGEAIEKMLQEKKISTKINYDILKTLTD 519
>gi|330038667|ref|XP_003239664.1| TFIIB related factor hBRF [Cryptomonas paramecium]
gi|327206588|gb|AEA38766.1| TFIIB related factor hBRF [Cryptomonas paramecium]
Length = 385
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 110/193 (56%), Gaps = 9/193 (4%)
Query: 2 RQMKNALNIGESDEIVH-VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
R++ +N+ + D A R + R + + C+Y+ CR K P+LLI
Sbjct: 78 RKIAQIVNLLKLDSTFQEYAYRLFLFVFQRGIIRKYKLLITCICCVYVVCRYKKAPYLLI 137
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK--VC 118
DFS + + +LGA++L++ + D + L +DPS+F+HKF L GNK +
Sbjct: 138 DFSEIVQTQLNKLGAIFLKI-----VRDLNIFLPIIDPSLFVHKFATNL-QFGNKTNAIT 191
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
TA +++ MKRDWI+TGRKPSGLCGAAL +S+ HGLK SK +I ++V I + TL RL
Sbjct: 192 KTALRLVSKMKRDWISTGRKPSGLCGAALLISSCMHGLKRSKKEIEEVVKIGDFTLGSRL 251
Query: 179 IEFENTDSGSLTI 191
E + T +L I
Sbjct: 252 REIDKTLLSNLNI 264
>gi|429962700|gb|ELA42244.1| hypothetical protein VICG_00643 [Vittaforma corneae ATCC 50505]
Length = 394
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 111/176 (63%), Gaps = 6/176 (3%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R+Y + + + +KG+ ++C+Y+ CRQ+S P LLIDFSN L I+++++G V+L+
Sbjct: 94 AFRWYKLCLQYSLSKGKSILYTLSACVYITCRQESTPHLLIDFSNELRIDLFKIGKVFLK 153
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 139
+ Q+L I + +DPS+++H+F +L NK++ + + +++ MK+DWI GR+P
Sbjct: 154 IRQLLGID-----IPLIDPSLYMHRFCSQL-KFKNKEILNFSTLLVSRMKKDWILEGRRP 207
Query: 140 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
+ CGAAL +++ + +++ + VH AT+ KRL E +T+S L I+ FM
Sbjct: 208 NNSCGAALLIASRIFNEERDIAEVARAVHASIATINKRLEEMRDTESAELQIDQFM 263
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 60/151 (39%), Gaps = 46/151 (30%)
Query: 319 EGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQA 378
E H TP T D S D + F+ D +L NE+E K +IW++M EYL+E
Sbjct: 290 EETHFDTP----ITTFEDDSVEMKDAETFDFDDFLLNEDEAKTKAVIWDQMYGEYLKE-- 343
Query: 379 AKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQ 438
AQE RK +++ +K G
Sbjct: 344 --------------------------AQE-----------KRKLRKESVRRHSKRHG-FN 365
Query: 439 TALEATRRMLTKKRLSSKINYDVLEKLFDDS 469
T EA + K++SSK+NY LE LFD S
Sbjct: 366 TVEEAFLSL--DKKVSSKLNYAALEALFDPS 394
>gi|429852309|gb|ELA27452.1| transcription factor tfiiib complex subunit brf1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 729
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 114/200 (57%), Gaps = 8/200 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP--FL 58
M+ + LN+GE+ V+ A + + +A NF +GR V A CLY ACR + KP +
Sbjct: 149 MQGYAHQLNLGEN--TVNTAVQIFKLASQANFVQGRTLVMVAAVCLYAACRTE-KPCRIM 205
Query: 59 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKV 117
L+D ++ +NV++LG + L ++I D N QV P +++ +L +V
Sbjct: 206 LMDLADLTQLNVFKLGRAFKALNATVFIFD--NGEGQVFPEDLIYRLASKLEFKHMTNRV 263
Query: 118 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
+ A ++ MK+DWI GR+PSG+CGA L ++A H + + +IV +V + T+ +R
Sbjct: 264 AEDAIRLVQRMKQDWIVMGRRPSGICGACLLMAARMHNFRRTVREIVYLVKVTTHTIQER 323
Query: 178 LIEFENTDSGSLTIEDFMAR 197
L EF TD+ +T+EDF+A+
Sbjct: 324 LTEFNVTDASKMTVEDFLAQ 343
>gi|160331383|ref|XP_001712399.1| tfIIB-brf [Hemiselmis andersenii]
gi|159765847|gb|ABW98074.1| tfIIB-brf [Hemiselmis andersenii]
Length = 408
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 104/175 (59%), Gaps = 6/175 (3%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A +F+ +A R F G++ + + S LY CRQK LLIDFS+ I ++G+V+L+
Sbjct: 98 AFKFFILATQRGFINGQKLQNLCVSSLYTVCRQKKTHHLLIDFSDITQIQTNKIGSVFLK 157
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD-TARDILASMKRDWITTGRK 138
+I D + +DPS+++ +F RL G K+ +A ++A MKR+W++TGR+
Sbjct: 158 -----FIRDLKINIPVIDPSLYIQRFVSRLQLGNKTKLVSMSALRLIARMKREWVSTGRR 212
Query: 139 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIED 193
PSGLCGAA+ ++ HGLK ++ +I IV I + + RL E T +LTI++
Sbjct: 213 PSGLCGAAILLATKMHGLKKTQKEISSIVRIGDFAIRSRLREINKTSMSNLTIKE 267
>gi|358254676|dbj|GAA56126.1| transcription initiation factor brf1 [Clonorchis sinensis]
Length = 729
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 112/189 (59%), Gaps = 8/189 (4%)
Query: 8 LNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 67
L +G ++I A RFY A+ R T+GR QV ASC+YLA RQ +L+D S+ +
Sbjct: 70 LRLG--NDIATSAFRFYQSALFRGITRGRGALQVAASCVYLAARQLRVNLMLLDLSDAVG 127
Query: 68 INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC-DTARDILA 126
INVY LG Y +L + L+++ + ++DP +++ +F +L G V TA +L
Sbjct: 128 INVYVLGHCYTELRRRLHLS-----IPEMDPCLYIERFASQLEFGDKMPVVATTAMRLLQ 182
Query: 127 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDS 186
MK+DW+TTGR+PSGL AAL V+A H ++ D+ +I I + T KRL EF T +
Sbjct: 183 RMKKDWLTTGRRPSGLAAAALLVAARIHEFNRNEEDVARIARISQQTARKRLEEFGRTPT 242
Query: 187 GSLTIEDFM 195
+L+IEDF
Sbjct: 243 SALSIEDFF 251
>gi|22035558|ref|NP_663718.1| transcription factor IIIB 90 kDa subunit isoform 3 [Homo sapiens]
gi|9909702|emb|CAC04513.1| transcription factor II B-related factor [Homo sapiens]
gi|119602313|gb|EAW81907.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_b
[Homo sapiens]
gi|119602315|gb|EAW81909.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_b
[Homo sapiens]
gi|119602318|gb|EAW81912.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_b
[Homo sapiens]
Length = 473
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 170/375 (45%), Gaps = 63/375 (16%)
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 180 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 220
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 62 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 121
Query: 221 EVLCKHKDTGKPFACGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERERMVKASAEENS 278
+ + + +P A G S ++ T + L G + E E + A++ N
Sbjct: 122 DAIEIELENSRPKAKGGLASLAKDGSTEDTASSLCG------EEDTEDEELEAAASHLNK 175
Query: 279 SFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEA 334
RE + SPE P ++G + TA++ G D + +++
Sbjct: 176 DLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQSSDP 234
Query: 335 SDGSDN----FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA 390
D S + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 235 KDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK-- 292
Query: 391 LEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTK 450
EL KE + K++ + + A TA EA +ML +
Sbjct: 293 ----------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQ 327
Query: 451 KRLSSKINYDVLEKL 465
K++SSKINY VL L
Sbjct: 328 KKISSKINYSVLRGL 342
>gi|340522164|gb|EGR52397.1| RNA polymerase III transcription initiation factor B complex
component [Trichoderma reesei QM6a]
Length = 679
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 111/197 (56%), Gaps = 6/197 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLL 59
M+ LNI SD +V + + +A + NF +GR V A CLY ACR + +L
Sbjct: 128 MQGYAQQLNI--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRAEPPCKVML 185
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 118
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 186 IDLADLVQLNVFKLGRIFKKLNEVVPIG--ADGLIPVYPEDLIWRFATKMEFHQDTAKVA 243
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 244 EDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTIREVVYIVKVTNHTIQNRL 303
Query: 179 IEFENTDSGSLTIEDFM 195
EF NT+S +++EDF+
Sbjct: 304 QEFNNTESSRMSVEDFL 320
>gi|358399904|gb|EHK49241.1| hypothetical protein TRIATDRAFT_290021 [Trichoderma atroviride IMI
206040]
Length = 734
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 110/197 (55%), Gaps = 6/197 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLL 59
M+ LNI SD +V + + +A NF +GR V A CLY ACR + +L
Sbjct: 146 MQGYAQQLNI--SDSLVTAGTQVFKLASGANFIQGRTLASVAAVCLYAACRAEPPCKVML 203
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 118
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 204 IDLADLVQLNVFKLGRIFKKLNEVVPIG--ADGLIPVYPEDLIWRFATKMEFRQDTAKVA 261
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 262 EDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQNRL 321
Query: 179 IEFENTDSGSLTIEDFM 195
EF NT+S +++EDF+
Sbjct: 322 QEFNNTESSRMSVEDFL 338
>gi|356561939|ref|XP_003549234.1| PREDICTED: uncharacterized protein LOC100781816 [Glycine max]
Length = 277
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/137 (60%), Positives = 106/137 (77%), Gaps = 4/137 (2%)
Query: 336 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 395
D S+ SDIDD EVD Y+H+EE KH KKI+WE NRE+LEEQAAKEAAAAA+K A EA +
Sbjct: 110 DESETLSDIDDEEVDLYIHDEEGKHIKKILWETANREHLEEQAAKEAAAAASKKAFEAKF 169
Query: 396 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR--- 452
+NC E + AA+ELAA++ AVAKS+KE +QKRA EAKN+ PAQ+A EA +M KKR
Sbjct: 170 ENCSEDILAARELAASSTEAVAKSKKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKRNLQ 229
Query: 453 -LSSKINYDVLEKLFDD 468
L SK+N+++L +LFD+
Sbjct: 230 GLKSKVNFELLNELFDE 246
>gi|302886509|ref|XP_003042144.1| hypothetical protein NECHADRAFT_1589 [Nectria haematococca mpVI
77-13-4]
gi|256723053|gb|EEU36431.1| hypothetical protein NECHADRAFT_1589 [Nectria haematococca mpVI
77-13-4]
Length = 670
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 112/197 (56%), Gaps = 6/197 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 59
M+ LN+GES ++ + + +A + NF +GR V A CLY ACR Q +L
Sbjct: 138 MQGYAQQLNVGES--LITAGTQVFKLASSANFVQGRTLASVAAVCLYAACRAQPPCKVML 195
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 118
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 196 IDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEFHQETAKVA 253
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 254 EDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQSRL 313
Query: 179 IEFENTDSGSLTIEDFM 195
EF+ T+S +++EDF+
Sbjct: 314 QEFKVTESSRMSVEDFL 330
>gi|358386661|gb|EHK24256.1| hypothetical protein TRIVIDRAFT_124308, partial [Trichoderma virens
Gv29-8]
Length = 659
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 111/197 (56%), Gaps = 6/197 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLL 59
M+ LNI SD +V + + +A + NF +GR V A CLY ACR + +L
Sbjct: 127 MQGYAQQLNI--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRAEPPCKVML 184
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 118
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 185 IDLADLVQLNVFKLGRIFKKLNEVVPIG--TDGLIPVYPEDLIWRFATKMEFHQDTAKVA 242
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 243 EDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTIREVVYIVKVTNHTIQNRL 302
Query: 179 IEFENTDSGSLTIEDFM 195
EF NT+S +++EDF+
Sbjct: 303 QEFNNTESSRMSVEDFL 319
>gi|378734701|gb|EHY61160.1| transcription initiation factor TFIIB [Exophiala dermatitidis
NIH/UT8656]
Length = 977
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 110/198 (55%), Gaps = 21/198 (10%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-------SKP---FLLIDFSNYL 66
V + + +A +F +GR + V CLYLACR+K +P +LIDF+ L
Sbjct: 167 VEAGMQIFKLAWGNSFVQGRTIDSVAVVCLYLACRRKHEQIRNERRPMYSLMLIDFAEKL 226
Query: 67 NINVYELGAVYLQLCQVLYI-------ADESNVLKQVDPSIFLHKFTDRL---LPGGNKK 116
NI+V+ LG +Y L + LY+ AD S L + P + +++F D L +K
Sbjct: 227 NIDVFALGKMYSDLVRRLYLQPDGSVQADVSADLLAMGPEVLVNRFVDELEFDREHRDKI 286
Query: 117 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 176
D R I+ MKRDW++TGR+PSG+CGAA+ ++A + + + ++V + E T+ K
Sbjct: 287 KMDAIR-IVQRMKRDWMSTGRRPSGVCGAAVILAARMNNYRRTTREVVLTAKVTEITINK 345
Query: 177 RLIEFENTDSGSLTIEDF 194
RL EF++T S L+I+ F
Sbjct: 346 RLAEFQDTASSKLSIKQF 363
>gi|409041381|gb|EKM50866.1| hypothetical protein PHACADRAFT_31958 [Phanerochaete carnosa
HHB-10118-sp]
Length = 706
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 119/193 (61%), Gaps = 17/193 (8%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLN---- 67
SD + A R Y +A+ FT+GRR+ V A C+Y+ACRQK ++ ++LIDFS+ L
Sbjct: 116 SDVVSLAATRLYTLALEHKFTRGRRSMHVVAVCVYVACRQKETRNYMLIDFSDLLQRMLT 175
Query: 68 ----INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTA 121
++V+ELG YLQL + L + L +DPS + +F LL G++ +V A
Sbjct: 176 SAFKVSVFELGHTYLQLVRTLNLR-----LPPIDPSHHISRFA-ALLEFGDETPRVAVDA 229
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
++A M RDW+ GR+PSG+CGAAL ++A + + S ++IV++V I ++T+ KRL EF
Sbjct: 230 TRLVARMDRDWLARGRRPSGICGAALLLAARMNNFRRSVAEIVQVVKIADSTVRKRLEEF 289
Query: 182 ENTDSGSLTIEDF 194
T S +L++ DF
Sbjct: 290 RKTSSAALSVGDF 302
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 24/117 (20%)
Query: 352 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 411
++ EEE K+ +W EMNR+YLE AAKA LE PE + + A
Sbjct: 516 FILTEEEVKVKERVWVEMNRDYLEN--------LAAKAELEQMGGETPEKKKRKKRKTA- 566
Query: 412 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKINYDVLEKLFD 467
+ R A + TA E+ + ++ K R S +INYD L LFD
Sbjct: 567 -----------HTKPRDASTPHGA---TAAESVKNLIKKNPRYSKRINYDALRDLFD 609
>gi|400595952|gb|EJP63740.1| Brf1-like TBP-binding domain-containing protein [Beauveria bassiana
ARSEF 2860]
Length = 722
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 110/197 (55%), Gaps = 6/197 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLL 59
M+ LN+ SD +V + + +A NF +GR V A CLY ACR + +L
Sbjct: 147 MQGYAQQLNV--SDSLVAAGTQVFKLASGANFIQGRTLASVAAVCLYAACRAEPPCKVML 204
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 118
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 205 IDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEFRQETAKVA 262
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 263 EDAVRLVKRMSRDWLVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQNRL 322
Query: 179 IEFENTDSGSLTIEDFM 195
EF +T+S +++EDF+
Sbjct: 323 QEFNHTESSQMSVEDFL 339
>gi|346318705|gb|EGX88307.1| Transcription factor TFIIB, putative [Cordyceps militaris CM01]
Length = 722
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 110/197 (55%), Gaps = 6/197 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLL 59
M+ LN+ SD +V + + +A NF +GR V A CLY ACR + +L
Sbjct: 148 MQGYAQQLNV--SDSLVTAGTQVFKLASGANFIQGRTLASVAAVCLYAACRAEPPCKVML 205
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 118
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 206 IDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEFRQETAKVA 263
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 264 EDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQNRL 323
Query: 179 IEFENTDSGSLTIEDFM 195
EF +T+S +++EDF+
Sbjct: 324 SEFNSTESSQMSVEDFL 340
>gi|402585748|gb|EJW79687.1| transcription factor TFIIB repeat family protein, partial
[Wuchereria bancrofti]
Length = 426
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 111/181 (61%), Gaps = 6/181 (3%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
V+ A F+ + V+RNFT+GR V A+CLY+ CR ++ LL+DFS+ +NV++LG
Sbjct: 104 VNTAFNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLENTAHLLLDFSDITQVNVFDLGRT 163
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITT 135
L + L I L DP +++ +F L G +K V A ++ MKRDWI T
Sbjct: 164 LNFLTRSLKIN-----LPTTDPCMYILRFAVSLDFGAKQKEVVSLATRLVQRMKRDWIAT 218
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+P+GLCGAAL ++A + + +D+V++VHI EA + KRL EF T S +LTI++F
Sbjct: 219 GRRPTGLCGAALLLAARCYNFNRTVADVVRVVHISEAVVKKRLDEFGQTPSSTLTIDEFT 278
Query: 196 A 196
+
Sbjct: 279 S 279
>gi|380484171|emb|CCF40167.1| Brf1-like TBP-binding domain-containing protein [Colletotrichum
higginsianum]
Length = 734
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 110/199 (55%), Gaps = 6/199 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 59
M+ LN+ SD V+ A + + +A NF +GR V A CLY ACR ++ +L
Sbjct: 155 MQGYAQRLNL--SDNTVNTAVQVFKLASQANFVQGRTLVMVAAVCLYTACRTERPCKIML 212
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 118
ID ++ INV++LG + L +V+YI N V P L + +L +V
Sbjct: 213 IDLADLTQINVFKLGRAFKALNRVVYIF--GNGEAPVFPEDILFRLASKLEFKHMTNRVA 270
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
+ A ++ MK+DWI GR+PSG+CGA L ++A H + + ++V +V + T+ +RL
Sbjct: 271 EDAVRLVQRMKQDWIVMGRRPSGICGACLLIAARMHNFRRTTREVVYVVKVTTHTIQERL 330
Query: 179 IEFENTDSGSLTIEDFMAR 197
EF T++ +T+EDF+++
Sbjct: 331 QEFNVTEASKMTVEDFLSQ 349
>gi|310801628|gb|EFQ36521.1| Brf1-like TBP-binding domain-containing protein [Glomerella
graminicola M1.001]
Length = 736
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 110/199 (55%), Gaps = 6/199 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 59
M+ LN+ SD V+ A + + +A NF +GR V A CLY ACR ++ +L
Sbjct: 153 MQGYAQRLNL--SDNTVNTAVQVFKLASQANFVQGRTLVMVAAVCLYTACRTERPCKIML 210
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 118
ID ++ INV++LG + L +V+YI N V P L + +L +V
Sbjct: 211 IDLADLTQINVFKLGRAFKALNRVVYIF--GNGEAPVFPEDILFRLASKLEFKHMTNRVA 268
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
+ A ++ MK+DWI GR+PSG+CGA L ++A H + + ++V +V + T+ +RL
Sbjct: 269 EDAVRLVHRMKQDWIVMGRRPSGICGACLLIAARMHNFRRTTREVVYVVKVTTHTIQERL 328
Query: 179 IEFENTDSGSLTIEDFMAR 197
EF T++ +T+EDF+++
Sbjct: 329 QEFNVTEASKMTVEDFLSQ 347
>gi|46116324|ref|XP_384180.1| hypothetical protein FG04004.1 [Gibberella zeae PH-1]
Length = 762
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 111/197 (56%), Gaps = 6/197 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLL 59
M+ LN+ SD +V + + +A + NF +GR V A CLY ACR + +L
Sbjct: 150 MQGYAQQLNV--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRAEPPCKVML 207
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 118
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 208 IDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEFHQDTAKVA 265
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 266 EDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQNRL 325
Query: 179 IEFENTDSGSLTIEDFM 195
EF+ T+S +++EDF+
Sbjct: 326 QEFKVTESSRMSVEDFL 342
>gi|408395340|gb|EKJ74522.1| hypothetical protein FPSE_05272 [Fusarium pseudograminearum CS3096]
Length = 759
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 111/197 (56%), Gaps = 6/197 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLL 59
M+ LN+ SD +V + + +A + NF +GR V A CLY ACR + +L
Sbjct: 150 MQGYAQQLNV--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRAEPPCKVML 207
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 118
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 208 IDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEFHQDTAKVA 265
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 266 EDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQNRL 325
Query: 179 IEFENTDSGSLTIEDFM 195
EF+ T+S +++EDF+
Sbjct: 326 QEFKVTESSRMSVEDFL 342
>gi|430813871|emb|CCJ28823.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 452
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 110/393 (27%), Positives = 171/393 (43%), Gaps = 96/393 (24%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN------------ 67
A R++ +AV NF +GRR++ V ASCLY+ CR + +LIDFS+ L
Sbjct: 106 AVRYFTLAVTHNFIQGRRSQYVIASCLYIVCRLERTSHMLIDFSDILQVNLILKNIYLIV 165
Query: 68 --INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDI 124
INV+ LG+ +L+L QVL+I L DPS+++ +F L G KV A +
Sbjct: 166 NKINVFTLGSTFLKLVQVLHIT-----LPFADPSLYITRFAALLEFGAETHKVATDAIRL 220
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184
+ M RDW+ TGR+P+GL ++A + + S ++V +V + + T+ KRL EF+ T
Sbjct: 221 VQRMNRDWMQTGRRPAGLL-----IAARMNNFRRSVEEVVHVVKVGDLTVRKRLEEFKTT 275
Query: 185 DSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEE 244
SG LT++ +
Sbjct: 276 ASGDLTVQ---------------------------------------------------D 284
Query: 245 FMTISEGLEGGADPPAF----QVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPE- 299
F TI LE DPP++ + R+R ++A NS E E D S + + E
Sbjct: 285 FRTI--WLEQTHDPPSYLQGKKKERRQRDIEAMEFLNSK-EHEIDILDASTTNYYHNKEK 341
Query: 300 --PESIGVPKNCTTQTASNEGEGD----------HTKTPGVDATTEASDGSDNFSDIDDF 347
P + + T+ N +G+ + + T + + SDIDD
Sbjct: 342 MLPLKLIETGDFVTELNDNFLKGEMESVLKDRDIQRMSMAIQETKKTGKYCETLSDIDDD 401
Query: 348 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 380
E++ + +E E K +W E+NREYL Q K
Sbjct: 402 EINQIILSEPEVLAKTRVWMELNREYLAAQEVK 434
>gi|342876335|gb|EGU77962.1| hypothetical protein FOXB_11527 [Fusarium oxysporum Fo5176]
Length = 753
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 111/197 (56%), Gaps = 6/197 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLL 59
M+ LN+ SD +V + + +A + NF +GR V A CLY ACR + +L
Sbjct: 150 MQGYAQQLNV--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRAEPPCKVML 207
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 118
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 208 IDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEFHQDTAKVA 265
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 266 EDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQNRL 325
Query: 179 IEFENTDSGSLTIEDFM 195
EF+ T+S +++EDF+
Sbjct: 326 QEFKVTESSRMSVEDFL 342
>gi|324516790|gb|ADY46635.1| Transcription factor IIIB 90 kDa subunit, partial [Ascaris suum]
Length = 339
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 108/179 (60%), Gaps = 6/179 (3%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A F+ + V+RNFT+GR V A+CLY+ CR ++ LL+DFS+ +NV+ELG
Sbjct: 104 IDTAYNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLENTAHLLLDFSDVTQVNVFELGRT 163
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 135
L + L I L DP +++ +F L G K+V A ++ MKRDWI T
Sbjct: 164 LNFLARSLKIN-----LPTTDPCLYILRFAVLLEFGEKEKEVVSLATRLVQRMKRDWIAT 218
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
GR+P+GLCGAAL ++A + + DIV++VHI EA + KRL EF T S SLTI++F
Sbjct: 219 GRRPTGLCGAALLLAARCYNFNRTIGDIVRVVHISEAVVRKRLDEFGKTPSSSLTIDEF 277
>gi|322696764|gb|EFY88552.1| hypothetical protein MAC_05446 [Metarhizium acridum CQMa 102]
Length = 742
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 109/197 (55%), Gaps = 6/197 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLL 59
M+ LN+ ES +V + + +A NF +GR V A CLY ACR + +L
Sbjct: 149 MQGYAQQLNVSES--LVTAGTQVFKLASGANFIQGRTLASVAAVCLYAACRAEPPCKVML 206
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 118
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 207 IDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEFHQETAKVA 264
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 265 EDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQNRL 324
Query: 179 IEFENTDSGSLTIEDFM 195
EF T+S +++EDF+
Sbjct: 325 QEFNVTESSQMSVEDFL 341
>gi|225681951|gb|EEH20235.1| transcription initiation factor IIIB chain BRF [Paracoccidioides
brasiliensis Pb03]
Length = 767
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 100/162 (61%), Gaps = 2/162 (1%)
Query: 35 GRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 93
GRRT+ V A CLY+ACR Q +LIDF++ L INV++LG Y L L + ++
Sbjct: 133 GRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIM 192
Query: 94 KQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 152
+DP +++F +L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A
Sbjct: 193 NPIDPESLIYRFAKQLEFGTSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAAR 252
Query: 153 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
+ + + ++V +V + E T+ +RL EF+ T+SG LT++ F
Sbjct: 253 MNNFRRTVREVVYVVKVTELTIHQRLNEFKATESGELTVDQF 294
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 32/137 (23%)
Query: 346 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 405
D EV L + E K+ IW N++YL Q AK A K AL A
Sbjct: 457 DPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRAL-------------A 498
Query: 406 QELAAAAAAAVAKSRKEKQQKRAAEA--------------KNSGPAQTALEATRRMLTKK 451
+E VA +++++ R + A T EA R+ML K+
Sbjct: 499 EEEELVNGRRVANRPRKRRKGRMGDVGYLGEGNGEGGEGEGGGTRASTPAEAMRKMLEKR 558
Query: 452 RLSSKINYDVLEKLFDD 468
S KINY +LE++++D
Sbjct: 559 GFSKKINYRLLEEMYED 575
>gi|123472770|ref|XP_001319577.1| Transcription factor TFIIB repeat family protein [Trichomonas
vaginalis G3]
gi|121902363|gb|EAY07354.1| Transcription factor TFIIB repeat family protein [Trichomonas
vaginalis G3]
Length = 409
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 7/184 (3%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVY 71
S + V +A R Y IAV FT+GR E V A+ +Y+A R +S +LL D + +++ +Y
Sbjct: 92 SQDAVELAHRIYQIAVKHRFTRGRTIEIVSAAAVYVAIRVNRSSGYLLDDVAEHVSCGIY 151
Query: 72 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKR 130
EL A L+L + + L +DP +++ +F + L G N K V DTA I+ + R
Sbjct: 152 ELAATALRLAHAV-----NQPLPTIDPVLYITRFLEELNLGRNLKAVHDTAIHIVHRLDR 206
Query: 131 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 190
DWI TGRKPSG+ G A+ ++ H + SK I +I +C +T+ KRL E T+ +
Sbjct: 207 DWIQTGRKPSGIVGTAIMIACQIHHIPISKERIKEIARVCTSTINKRLKEISETELARES 266
Query: 191 IEDF 194
I+
Sbjct: 267 IDQL 270
>gi|440638775|gb|ELR08694.1| hypothetical protein GMDG_03376 [Geomyces destructans 20631-21]
Length = 693
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 110/188 (58%), Gaps = 6/188 (3%)
Query: 14 DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP--FLLIDFSNYLNINVY 71
+ +++ + + +A NF +GRR V A CLY A R K +P +LIDF++ +NV+
Sbjct: 138 ESVLNSGVQIFKLAAMNNFIQGRRMNTVAAVCLYTAAR-KERPCRVMLIDFADSCGVNVF 196
Query: 72 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKR 130
+LG + L Q + I+ ++ + V P +++F +L G + KV ++A ++ M
Sbjct: 197 KLGHTFKALHQKISIS--ADGIMPVLPEDLIYRFATKLEFGQDTTKVAESAVRLVQRMSL 254
Query: 131 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 190
DW+ GR+PSG+CGA L ++A H + + ++V IV + AT+ KRL EF+ T S LT
Sbjct: 255 DWMVMGRRPSGICGACLILAARMHNFRRTVKEVVYIVKVTTATIQKRLEEFKVTASSDLT 314
Query: 191 IEDFMARK 198
+E F++ +
Sbjct: 315 VEQFLSNQ 322
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 28/146 (19%)
Query: 322 HTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKE 381
+ + P V AS F+D D EV L +E E K+ IW N+++L +QA K
Sbjct: 522 YAQAPQVSIPMTASVDESEFAD--DPEVANCLLSEAEAAIKEHIWVNANKDWLRDQAVKL 579
Query: 382 AAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTAL 441
A A +A V + R + Q RAA S PA+ A+
Sbjct: 580 YNQKIADKAPKARRNR------------------VKRPRIGEGQTRAA----SSPAEAAV 617
Query: 442 EATRRMLTKKRLSSKINYDVLEKLFD 467
E +L ++ S +INYD + +F+
Sbjct: 618 E----VLKERTWSKRINYDAIRGIFE 639
>gi|297828227|ref|XP_002881996.1| hypothetical protein ARALYDRAFT_346315 [Arabidopsis lyrata subsp.
lyrata]
gi|297327835|gb|EFH58255.1| hypothetical protein ARALYDRAFT_346315 [Arabidopsis lyrata subsp.
lyrata]
Length = 475
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 113/299 (37%), Positives = 148/299 (49%), Gaps = 73/299 (24%)
Query: 164 VKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVL 223
VKIVHICEATL KRLIEF NT++ S T ++ ++E + N P VL
Sbjct: 173 VKIVHICEATLTKRLIEFGNTEAASFTADELSKTERERKKETELRSKRN-PISYKEGVVL 231
Query: 224 CKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM-VKASAEENSSFER 282
C H+D KP GLC+SCY+EFM +S GLEGG+DPPAFQ AE+ERM KAS EEN
Sbjct: 232 CMHQDC-KPVDYGLCKSCYDEFMKVSGGLEGGSDPPAFQRAEKERMEEKASREEND---- 286
Query: 283 ESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFS 342
+ +++G D + T S
Sbjct: 287 -----------------------------KQLNSDGHSDESST---------------LS 302
Query: 343 DIDDFE--------VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 394
D+DD E +D Y N EE +I+++ N EY E++AAKEAAA A
Sbjct: 303 DVDDRESDRFTVSQLDCYFRNPEEVRQVEIVFDLTNPEYNEKEAAKEAAALNASNNASNL 362
Query: 395 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 453
+ A+ AA AKSRKEK+Q+RA E KN+ P TA+EA RM+ +K+
Sbjct: 363 F--------------EASKAAAAKSRKEKRQQRAEEEKNAPPPATAMEAVGRMVKRKKF 407
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 423 KQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 469
K+Q+RA E KN+ P TA+EA M+ +K+ +IN D LE+L D S
Sbjct: 44 KRQQRAEEEKNAPPPATAIEAVDSMVKRKKF-RRINCDYLEELLDAS 89
>gi|242018719|ref|XP_002429821.1| transcription factor IIIB 70 kDa subunit, putative [Pediculus
humanus corporis]
gi|212514839|gb|EEB17083.1| transcription factor IIIB 70 kDa subunit, putative [Pediculus
humanus corporis]
Length = 485
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 118/407 (28%), Positives = 187/407 (45%), Gaps = 87/407 (21%)
Query: 94 KQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 151
++ D S+++ +F +RL GNK +V TA ++ MKRD + TGR+PSGLCGAAL ++A
Sbjct: 9 RKEDVSLYILRFANRL-EFGNKTHQVSMTALRLVQRMKRDSMHTGRRPSGLCGAALLMAA 67
Query: 152 LTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPN 211
H S SDI+KIV + E+TL KRL+EF T S SL++++FM
Sbjct: 68 RLHEFNRSVSDIIKIVKVHESTLRKRLLEFGETPSSSLSLDEFMT--------------- 112
Query: 212 NGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA-ERE--- 267
V + + F + ++ F I EG E G + A Q E+E
Sbjct: 113 ----------VDLEEEQDPPSFKAARKKDQHDRFQKIIEGDEMGQNLTALQREIEKELNE 162
Query: 268 -------RMVKASAEENSSFERESDSPFMSR-VDK--VQSPEPESIGVPKNCTTQTASNE 317
VK+S+ S E ES++ ++ V K +++ E E I P T N+
Sbjct: 163 LSSKRKANHVKSSSVPISGNEEESENQALNNFVQKFTIEAIE-ECINKPGEEETGNVENQ 221
Query: 318 GEGDHTKTPGVDA------------------TTEASDGSDNFSDIDDFEVDGYLHNEEEK 359
G T G+ + + DG D+DD E++ Y+ + E
Sbjct: 222 GLPPSFTTLGLSSNISTTTTTTTTTPTQEQTSLNVPDGELVADDLDDDELNQYIMTDREA 281
Query: 360 HYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKS 419
+K +W ++N +YL+ Q +E A K C K
Sbjct: 282 KFKDSLWMKVNEDYLQRQKEREEKLAKEKE--------C------------------GKP 315
Query: 420 RKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 466
K++++ + ++KN+ A +A EA +ML +K++S+KINYDVL+ L
Sbjct: 316 EKKRKKYSSKKSKNAPAANSAGEAFEKMLQEKKMSTKINYDVLKSLM 362
>gi|322703408|gb|EFY95017.1| hypothetical protein MAA_09466 [Metarhizium anisopliae ARSEF 23]
Length = 738
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 106/191 (55%), Gaps = 4/191 (2%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNY 65
A + S+ +V + + +A NF +GR V A CLY ACR + +LID ++
Sbjct: 152 AQQLSVSESLVTAGTQVFKLASGANFIQGRTLASVAAVCLYAACRAEPPCKVMLIDLADL 211
Query: 66 LNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDI 124
+ +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV + A +
Sbjct: 212 VQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEFHQETAKVAEDAVRL 269
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184
+ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL EF T
Sbjct: 270 VKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQNRLQEFNIT 329
Query: 185 DSGSLTIEDFM 195
+S +++EDF+
Sbjct: 330 ESSQMSVEDFL 340
>gi|402083713|gb|EJT78731.1| transcription initiation factor IIB [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 724
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 104/186 (55%), Gaps = 5/186 (2%)
Query: 14 DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLNINVYE 72
D ++ A + Y +A +RNFT+GR + V A CLY ACR+++ +L+D ++ + +V+
Sbjct: 161 DRTINSAVQLYKLASSRNFTQGRSMQYVAAMCLYAACRKEATCKIMLMDLADLVQHDVFH 220
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRD 131
LG +Y + + N + D +++F RL G KV +TA ++ M RD
Sbjct: 221 LGRMYKAFIRDIGAGGNYNPIFVED---LIYRFAARLEFGDKTNKVANTAVRLVQRMDRD 277
Query: 132 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 191
W+ GR+PSG+CGA L ++A + + + ++V I + TL +RL EF S LT+
Sbjct: 278 WMVMGRRPSGICGACLIMAARMNNFRRTVREVVFIAKVTMHTLQQRLDEFAEVPSAKLTV 337
Query: 192 EDFMAR 197
EDF+ R
Sbjct: 338 EDFLVR 343
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 29/128 (22%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D F+D D EV L ++EE K +W N++++ +Q KE KA L A N
Sbjct: 548 DEFAD--DPEVMYCLLSKEEAELKTQLWVNQNKDWMRKQQEKEF-----KAKLAA---NK 597
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 458
P+G R ++ R E + S PA +A +AT M+ +++ S +I+
Sbjct: 598 PKG------------------RSRSKKPRIGEGQTS-PADSATDATLEMIDRRQFSKRID 638
Query: 459 YDVLEKLF 466
YD + +
Sbjct: 639 YDAVRSML 646
>gi|384496736|gb|EIE87227.1| hypothetical protein RO3G_11938 [Rhizopus delemar RA 99-880]
Length = 582
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 96/176 (54%), Gaps = 30/176 (17%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
+R+Y +AV FT+GR++E V A +NV+ LGA +L+
Sbjct: 80 GQRYYNLAVVNRFTRGRKSEHVAA------------------------VNVFTLGATFLK 115
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRK 138
LC+VL + +L VDPS ++ +F L G ++V A I M RDWI TGR+
Sbjct: 116 LCRVLNL-----ILPHVDPSFYISRFAVALDFGDYTQRVAQDAVRIAQRMDRDWIVTGRR 170
Query: 139 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
P+G+CGA L ++A +G + + +++ +V + E T+ KRL EF T+S L+ +DF
Sbjct: 171 PAGICGACLLIAARMNGFRRTLREMIYVVKVAEVTIQKRLNEFNQTESAQLSAQDF 226
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 30/128 (23%)
Query: 340 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCP 399
N SD+D E++ + EEE K +W N+EYLEE A + + K
Sbjct: 395 NLSDVDCDEIEAMILTEEEVALKTKLWYNANKEYLEEMAVRRLVEKDKGTGKDKRTKG-- 452
Query: 400 EGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINY 459
SRK+KQQ PA T EA +++L K+LS KIN
Sbjct: 453 -------------------SRKKKQQV---------PASTPAEAAKQLLATKKLSKKINQ 484
Query: 460 DVLEKLFD 467
V + +F+
Sbjct: 485 AVFDDMFE 492
>gi|256084250|ref|XP_002578344.1| transcription initiation factor brf1 [Schistosoma mansoni]
gi|353229135|emb|CCD75306.1| putative transcription initiation factor brf1 [Schistosoma mansoni]
Length = 770
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 103/178 (57%), Gaps = 6/178 (3%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R+Y A+ R T+GR V A C+YLA RQ +L+D S+ + +NVY LG VY
Sbjct: 96 AFRYYQSALFRGLTRGRSAFTVAAGCIYLAARQLRVNLMLLDLSDAVGVNVYVLGRVYAD 155
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRK 138
L + L +A + ++DP I++ +F +L G V TA +L MK+DWI TGR+
Sbjct: 156 LKKRLNLA-----IPEMDPCIYIDRFASQLEFGDKVSTVATTAMRLLQRMKKDWIATGRR 210
Query: 139 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 196
PSGL AAL V+A H ++ D+ +I I ++T KRL EF T S +L+IE F +
Sbjct: 211 PSGLAAAALLVAARIHEFNRTEEDVARIARISQSTARKRLEEFGRTPSSALSIEAFFS 268
>gi|389642775|ref|XP_003719020.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|351641573|gb|EHA49436.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|440475254|gb|ELQ43948.1| transcription initiation factor IIB [Magnaporthe oryzae Y34]
gi|440490906|gb|ELQ70402.1| transcription initiation factor IIB [Magnaporthe oryzae P131]
Length = 701
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 107/194 (55%), Gaps = 7/194 (3%)
Query: 6 NALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSN 64
N+LN+ E V+ A + + +A +RNFT+GR + V A CLY ACR+++ +L+D ++
Sbjct: 151 NSLNLPE--RTVNGASQLFKLASSRNFTQGRSSVYVAAMCLYAACRKETSCKIMLMDLAD 208
Query: 65 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARD 123
+ +V+ LG +Y + N + D +++F RL G KV TA
Sbjct: 209 LVQHDVFHLGRMYKAFISDIGAGGNYNPIFVED---LIYRFAARLEFGDKTNKVASTAVR 265
Query: 124 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 183
++ M RDW+ GR+PSG+CGA L ++A + + + ++V I + TL +RL EF
Sbjct: 266 LVQRMDRDWMVLGRRPSGICGACLIMAARMNNFRRTVREVVFIAKVTMHTLQQRLNEFAE 325
Query: 184 TDSGSLTIEDFMAR 197
S LT++DF+ R
Sbjct: 326 VPSAKLTVDDFLMR 339
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 26/128 (20%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D F+D D EV L +EE K +W N++++ +Q KE A
Sbjct: 539 DEFAD--DPEVMYCLLGKEEVELKTQLWVNQNKDWMRKQQEKEFKA-------------- 582
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 458
LAA + + K+ R E + S PA +A +AT M+ +++ S +I+
Sbjct: 583 --------RLAATNPPKPGRGNRAKK-PRIGEGQTS-PADSATDATLEMIDRRQFSKRID 632
Query: 459 YDVLEKLF 466
YD + +
Sbjct: 633 YDAVRSML 640
>gi|154314754|ref|XP_001556701.1| hypothetical protein BC1G_04086 [Botryotinia fuckeliana B05.10]
gi|347832015|emb|CCD47712.1| hypothetical protein [Botryotinia fuckeliana]
Length = 726
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 118/198 (59%), Gaps = 8/198 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP--FL 58
M+ + N L I SD+++ V + + +A NF +GRRT+ V A CLY ACR K +P +
Sbjct: 127 MQALANQLGI--SDQVIGVGHQIFKLASMNNFIQGRRTDLVAAVCLYSACR-KEQPCRVM 183
Query: 59 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKV 117
LIDF++ +NV+ LG + L + + +A ++ + V P + KF +L +KV
Sbjct: 184 LIDFADKSQVNVFTLGKYFKALHKQISLA--TDGILPVLPEDLIWKFASKLEFYEQTEKV 241
Query: 118 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
D A ++ M DW+ GR+PSG+CGA L ++A + + + +++V +V + AT+ KR
Sbjct: 242 ADDAIRMVRRMSLDWMVMGRRPSGVCGACLILAARMNNFRRTVTEVVYVVKVTTATIQKR 301
Query: 178 LIEFENTDSGSLTIEDFM 195
L EF+ T S +LT+E+F+
Sbjct: 302 LEEFKRTPSSALTVEEFL 319
>gi|281212344|gb|EFA86504.1| TATA box-binding protein-associated factor [Polysphondylium
pallidum PN500]
Length = 582
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 96/180 (53%), Gaps = 45/180 (25%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ +A R Y +A+ NFTKGRRT+ V A+CLY+ CR++S P + F+N L
Sbjct: 96 IDMALRMYQLAIEHNFTKGRRTQNVAATCLYIVCRRESTPRI---FANSL---------- 142
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+F ++ ++V TA ++A MKRDW+ TG
Sbjct: 143 ---------------------------EFEEK-----TQEVAATALKLVARMKRDWMATG 170
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 196
R+PSG+CGA+L+++A HG + +I++IV I E TL KRL EF+ T + + I +F A
Sbjct: 171 RRPSGICGASLFIAAKMHGFTRTVREIIQIVKIGETTLTKRLDEFKQTPASMMRISEFEA 230
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 340 NFSDIDDFEVDGYLHNEEEKHY-KKIIWEEMNREYLEEQAAK 380
D+ D E+D Y+ +++E Y K +IW EMN+E++ +QA +
Sbjct: 420 TLDDLSDEELDTYIEDDKETIYAKDVIWSEMNKEWIVKQAQR 461
>gi|320589780|gb|EFX02236.1| transcription factor tfiiib complex subunit [Grosmannia clavigera
kw1407]
Length = 829
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 108/195 (55%), Gaps = 9/195 (4%)
Query: 8 LNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP----FLLIDFS 63
LNI E V V ++Y +A + NF +GR+ + V A CLY ACR+ ++ +LID +
Sbjct: 169 LNIPE--HTVTVGFQYYKLASSANFVQGRKIQNVVAVCLYAACRKSTQANPCKIMLIDLA 226
Query: 64 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTAR 122
+ + V+ LG + +L Q + +A V+ IF +F +L KV +TA
Sbjct: 227 DLVKEEVFFLGRTFKKLLQTIDVAARDVQPIYVEDLIF--RFAAKLEFDTMTNKVAETAV 284
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
++ M RDW+ GR+P+G+CGA L ++A + + + ++V I + ATL RL EF+
Sbjct: 285 RLVQRMDRDWMVMGRRPAGICGACLIMAARMYNFRRTVREVVYIAKVTMATLQMRLDEFK 344
Query: 183 NTDSGSLTIEDFMAR 197
S +T+E+F+A+
Sbjct: 345 ELPSAKMTVEEFLAQ 359
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 24/123 (19%)
Query: 345 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 404
DD EV L +E E K+ IW NR YL + +E A
Sbjct: 659 DDPEVQFCLLSEAEAAAKEKIWMNENRAYLRMRQEREFRAK------------------- 699
Query: 405 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 464
AAA ++R+ ++ + E + S PA T EA + ++ S +INYD + +
Sbjct: 700 ----MAAANGTKKQTRRRLKKPKIGEGQTS-PATTPGEAAVEAMERRGFSKRINYDAMRR 754
Query: 465 LFD 467
+ D
Sbjct: 755 MLD 757
>gi|291236300|ref|XP_002738078.1| PREDICTED: BRF (transcription factor) homolog family member
(brf-1)-like [Saccoglossus kowalevskii]
Length = 534
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 121/425 (28%), Positives = 189/425 (44%), Gaps = 82/425 (19%)
Query: 98 PSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 156
P +++ +F +L G V TA +++ MKRDW+ TGR+PSGLCGAAL VSA H
Sbjct: 11 PCLYIPRFAHKLEFGDKTHDVSMTALRLVSRMKRDWMHTGRRPSGLCGAALLVSARLHDF 70
Query: 157 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM---------------ARK--K 199
++ +I+++V +C+ATL KRL EFE T S LTI++F AR+ K
Sbjct: 71 NRTQKEIIRVVKVCDATLRKRLTEFEETPSSRLTIDEFQKIDLEEEQDPPAFTNARRKAK 130
Query: 200 ELHEGVAANLPNNGPKVSGMNEVLCK--HKDTGK-PFACGLCRSCYEEFMTISEGLEGGA 256
+ G A LP ++S + E + K HK K P C S ++ + E +
Sbjct: 131 KAQFGEACKLPELEGEISCVQEEIEKALHKKHSKNPNLCEGSLSQSDDSQDVQETSQFVE 190
Query: 257 DPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDK---VQSPEPESIGVPKNCTTQT 313
+ QV E +++ + EE ++S M K V + +G+ +CT +
Sbjct: 191 EEILQQVEEETEILQDAKEEAV-----AESAVMQEPVKDCHVDDDVDDDVGIDNHCTNRN 245
Query: 314 -----------ASNEGEGDHTKTPGV----------------DATTEASDGSDNFSDIDD 346
AS EG + V + + DG + + IDD
Sbjct: 246 NEELDTLLLSEASWEGAYSGPRPSAVSLGLTQTIEECMQVPEEESVPEDDGELDLTGIDD 305
Query: 347 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 406
E++ ++ ++ E K IW + N EYL++Q KE +
Sbjct: 306 SELEKFILSDNEVELKTEIWMKENAEYLKQQKEKEEKEQRDR------------------ 347
Query: 407 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 466
+ S+ E ++KR + + A TA EA +ML +K++SSKINYDVL L
Sbjct: 348 --------ELGISKPESKKKRKYKKRVPFQANTAGEAIEKMLQEKKISSKINYDVLRDLN 399
Query: 467 DDSVC 471
+S C
Sbjct: 400 RESDC 404
>gi|451847520|gb|EMD60827.1| hypothetical protein COCSADRAFT_39548 [Cochliobolus sativus ND90Pr]
Length = 732
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 110/202 (54%), Gaps = 14/202 (6%)
Query: 5 KNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFL 58
KNA+ ++ + + ++ A +Y +A+ F +GRR V A +Y+A R Q +
Sbjct: 130 KNAIQALGASLNQREAVIEQAFSWYKLAMNHRFIQGRRMRNVAAVSIYMAARRQPENTLM 189
Query: 59 LIDFSNYLNINVYELGAVYLQLCQVLYIADE-----SNVLKQVDPSIFLHKFTDRLLPGG 113
LID + + NV+ LG Y Q ++L D S +++++P + K+ +L G
Sbjct: 190 LIDLAEKIQTNVWALGDTYKQFLEMLKEEDPAQLAGSKAVQEIEP--LMLKYCRKLEFGD 247
Query: 114 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+ +V D A +L M RDW+ GR+P+GLCGA + ++A + + + ++V +V + ++
Sbjct: 248 DSHRVADDACKVLKRMNRDWMVQGRQPAGLCGACIIIAARMNNFRRTIREVVYVVKVADS 307
Query: 173 TLMKRLIEFENTDSGSLTIEDF 194
T+ RL E++ T S +LT+ F
Sbjct: 308 TITSRLYEYKRTQSAALTVNQF 329
>gi|348546031|ref|XP_003460482.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like, partial
[Oreochromis niloticus]
Length = 605
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 113/420 (26%), Positives = 181/420 (43%), Gaps = 92/420 (21%)
Query: 97 DPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 155
DP +++ +F L G +V TA ++ MKRDW+ TGR+PSGLCGAAL ++A H
Sbjct: 8 DPCLYIPRFAHMLEFGAKTHEVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLIAARMHM 67
Query: 156 LKFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFM------------------- 195
+ S D++ +V I +A L KRL EFE+ + LTI++FM
Sbjct: 68 FQRSVKDVIGVVKIIYQAILRKRLTEFEDMPTSQLTIDEFMKVDLEQECDPPSFTAAQQE 127
Query: 196 ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEG--LE 253
A+ ++L + +A L ++S + + + +P G+ + +E G L
Sbjct: 128 AKMQQLEQELAKKLDEVEGEISCYKDEIETELEKSRPKLRGIYTTYTKEVDPEDNGDVLS 187
Query: 254 GGADP-------PAFQVA-------------ERERMVKASAEENSSFERESDSP-----F 288
+ P FQVA + E + ++ + E+ES P +
Sbjct: 188 LPSKPEEVEGEGVEFQVATHHLTEDFLCQVIQEEEGRGVNGDQEAVPEKESMGPHRQAAY 247
Query: 289 MSRVDKVQSPEPESIGVPKNCTTQTASNEGE---GDHTKTPGVDATTEASDGSDNFSDID 345
++ + + P S+ + + T S G GD+ ++ +D DID
Sbjct: 248 LTSIPG-KLPSAASLSLQQTFQTSDTSESGGRVLGDYPQSEELD-----------LKDID 295
Query: 346 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 405
D ++D Y+ NE+E K +W + N EYL+EQ K+ K E +YK + +
Sbjct: 296 DQKIDKYILNEKEVQVKMELWIKQNPEYLKEQEEKQEQINKEKE--EGTYKEKKKKSKKR 353
Query: 406 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
++ TA EA +RML KK +SSKINYDVL L
Sbjct: 354 DQIETL---------------------------TAGEAIKRMLEKKIISSKINYDVLRDL 386
>gi|451996589|gb|EMD89055.1| hypothetical protein COCHEDRAFT_1180203 [Cochliobolus
heterostrophus C5]
Length = 648
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 110/202 (54%), Gaps = 14/202 (6%)
Query: 5 KNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFL 58
KNA+ ++ + + ++ A +Y +A+ F +GRR V A +Y+A R Q +
Sbjct: 130 KNAIQALGASLNQREAVIEQAFSWYKLAMNHRFIQGRRMRNVAAVAIYMAARRQPENTLM 189
Query: 59 LIDFSNYLNINVYELGAVYLQLCQVLYIADE-----SNVLKQVDPSIFLHKFTDRLLPGG 113
LID + + NV+ LG Y Q ++L D S +++++P + K+ +L G
Sbjct: 190 LIDLAEKIQTNVWALGDTYKQFLEMLKEEDPAQLVGSKAVQEIEP--LMLKYCRKLEFGD 247
Query: 114 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+ +V D A +L M RDW+ GR+P+GLCGA + ++A + + + ++V +V + ++
Sbjct: 248 DSHRVADDACKVLKRMNRDWMVQGRQPAGLCGACIIIAARMNNFRRTIREVVYVVKVADS 307
Query: 173 TLMKRLIEFENTDSGSLTIEDF 194
T+ RL E++ T S +LT+ F
Sbjct: 308 TITSRLYEYKRTQSAALTVNQF 329
>gi|356565588|ref|XP_003551021.1| PREDICTED: uncharacterized protein LOC100810175 [Glycine max]
Length = 498
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/139 (56%), Positives = 100/139 (71%), Gaps = 6/139 (4%)
Query: 336 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 395
D S+ SDIDD EVD Y+H+EE KH KKI+WE NREYLEEQAAKEAAAAA+K A EA +
Sbjct: 110 DESETLSDIDDEEVDLYIHDEEGKHIKKILWETANREYLEEQAAKEAAAAASKKAFEAKF 169
Query: 396 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR--- 452
+NC E + AA+ELAA++ AVAKS+KE +QKRA EAKN+ PAQ+A E +M KKR
Sbjct: 170 ENCSEDILAARELAASSTEAVAKSKKEMRQKRAYEAKNTRPAQSAAETFGQMSNKKREQA 229
Query: 453 ---LSSKINYDVLEKLFDD 468
+++ IN E F++
Sbjct: 230 AKEVAAAINKKAFEAKFEN 248
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 376 EQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRK 421
EQAAKE AAA K A EA ++NC E + AA+EL A++ AVAKSRK
Sbjct: 227 EQAAKEVAAAINKKAFEAKFENCSEDILAARELGASSTEAVAKSRK 272
>gi|145544220|ref|XP_001457795.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425613|emb|CAK90398.1| unnamed protein product [Paramecium tetraurelia]
Length = 439
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 153/379 (40%), Gaps = 80/379 (21%)
Query: 12 ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN-V 70
E E +A+R + N R + + LY R K+ P+LLI+ S ++ +
Sbjct: 50 EYKEAFEIARRLLKFYKSENAI--RNGQYFAGAALYFGFRCKNAPYLLIEISEFIKKDSA 107
Query: 71 YELGAVYLQLCQVL-------YIADESNVLKQVDPSIFLHKFTDRLLPGGNKK---VCDT 120
++ YL+L + + I + L+ +DPSI++ KF RLL K + DT
Sbjct: 108 TKVAKCYLKLLKFVKADAKAPQIVQLAKSLQYLDPSIYIPKFV-RLLEISRDKYKAIVDT 166
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A ++ M DW+ GR+PS LCGAAL +SA HG S + K V +C+ T+ KRL E
Sbjct: 167 AMKLIKRMMLDWMAYGRRPSSLCGAALLISARFHGENVPTSQVCKTVQVCDETIRKRLAE 226
Query: 181 FENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRS 240
F T LT E F
Sbjct: 227 FNQTGLSQLTREQF---------------------------------------------- 240
Query: 241 CYEEFMTISEGLEGGA-DPPAFQ--VAERERMVKASAEENSSFERESDSPFMSRVDKVQS 297
E+ I G+ G DPP+++ + E M K EE ES + ++
Sbjct: 241 --EQIENIETGIPGPVNDPPSYRRIKQQEEEMRKGLTEEQIKQLEESTLKKALEMIELLK 298
Query: 298 PEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGS--DNFSDIDDFEVDGYLHN 355
+PE N + P + E D + S+ID+ E Y+ N
Sbjct: 299 VQPEVFKQEDNLKQEYP----------IPVKEPIKEQKDNEILSSLSEIDEQE---YILN 345
Query: 356 EEEKHYKKIIWEEMNREYL 374
E+EK K+I+W +N+EY+
Sbjct: 346 EQEKANKQIVWSALNKEYI 364
>gi|356495023|ref|XP_003516380.1| PREDICTED: uncharacterized protein LOC100810140 [Glycine max]
Length = 297
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/117 (64%), Positives = 91/117 (77%)
Query: 336 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 395
D S+ SDIDD EVD Y+H+EE KH KKI+WE REYLEEQAAKEAAAAA+K A EA +
Sbjct: 110 DESETLSDIDDEEVDLYIHDEEGKHIKKILWETTYREYLEEQAAKEAAAAASKKAFEAKF 169
Query: 396 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 452
+NC E + AA+ELAA++ AVAKS+KE +QKRA EAKN+ PAQ+A EA +M KKR
Sbjct: 170 ENCSEDILAARELAASSTEAVAKSKKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKR 226
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 33/46 (71%)
Query: 376 EQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRK 421
EQAAKEA A A K A EA + NC E + AA+ELAA++ AV KSRK
Sbjct: 227 EQAAKEATATANKKAFEAKFGNCSEDILAARELAASSTEAVEKSRK 272
>gi|345311738|ref|XP_003429146.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa
subunit-like [Ornithorhynchus anatinus]
Length = 618
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+
Sbjct: 42 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLL 99
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N
Sbjct: 100 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHMLEFGDNNPEIPN 154
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
I P AL V+A H + + +++++V +CE+TL KRL E
Sbjct: 155 PAAIATV-----------PPAQLELALLVAARMHDFRRTVKEVIRVVKVCESTLRKRLTE 203
Query: 181 FENTDSGSLTIEDFM 195
FE+T + LTI++FM
Sbjct: 204 FEDTPTSQLTIDEFM 218
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 27/137 (19%)
Query: 329 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 388
D + DG + S IDD E+D Y+ N+ E K +W + N EYL+EQ KEA A K
Sbjct: 379 DPNENSGDGELDLSGIDDSEIDRYILNDNEARIKAELWMKENAEYLKEQKEKEARIAKEK 438
Query: 389 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 448
EL KE + K++++ + A TA EA +ML
Sbjct: 439 ------------------ELGIY---------KEHKPKKSSKKREPIQASTAGEAIEKML 471
Query: 449 TKKRLSSKINYDVLEKL 465
+K++SSKINY+VL+ L
Sbjct: 472 EQKKISSKINYNVLKDL 488
>gi|440798133|gb|ELR19201.1| Molybdenum cofactor sulfurase, putative [Acanthamoeba castellanii
str. Neff]
Length = 579
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 82/129 (63%), Gaps = 6/129 (4%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R + +A+ NF +GR++E V +SCLY+ CR++ +LIDF++ LN+ +Y LG +L
Sbjct: 37 AFRLFLLALQHNFVRGRKSEYVISSCLYVVCRREKTAHMLIDFADVLNVPLYYLGHTFLD 96
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRK 138
C +L + L +DPS+++ +F +L G V +TA ++ M+RDWI TGR+
Sbjct: 97 FCSLLNLQ-----LPVIDPSLYIERFAAKLGFGDKTHAVANTALRLVQRMRRDWIITGRR 151
Query: 139 PSGLCGAAL 147
P+G+CGA L
Sbjct: 152 PAGICGADL 160
>gi|162606550|ref|XP_001713305.1| TFIIB related factor hBRF [Guillardia theta]
gi|12580771|emb|CAC27089.1| TFIIB related factor hBRF [Guillardia theta]
Length = 394
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 92/162 (56%), Gaps = 6/162 (3%)
Query: 31 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 90
NF ++ + SCLY+ R + P LL+DFS+ I ++G +L++ + L +
Sbjct: 105 NFVINKKVDLYIISCLYMISRFEKTPHLLVDFSDISQIRTNKIGVEFLKISKNLKME--- 161
Query: 91 NVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYV 149
+ +DP IF+H+F RLL G K+ +A I+A MKR+W++TGR+PS LCG AL +
Sbjct: 162 --IPIIDPCIFIHRFASRLLLGKKSGKIITSALRIIARMKRNWLSTGRRPSSLCGVALLI 219
Query: 150 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 191
++ +G +I KIV + +L R+ E +NT +T+
Sbjct: 220 ASRMYGFSIDTKEISKIVRVGHLSLKSRINEIKNTTLAQMTL 261
>gi|302774819|ref|XP_002970826.1| hypothetical protein SELMODRAFT_94206 [Selaginella moellendorffii]
gi|300161537|gb|EFJ28152.1| hypothetical protein SELMODRAFT_94206 [Selaginella moellendorffii]
Length = 74
Score = 110 bits (275), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/72 (69%), Positives = 60/72 (83%)
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA I+ASMKRDWI TGRKPSG+CGAAL+VSA HG + SKSD+V +VH+C TL KRL+
Sbjct: 1 TALRIVASMKRDWIQTGRKPSGVCGAALFVSAQIHGFECSKSDVVSVVHVCGDTLTKRLV 60
Query: 180 EFENTDSGSLTI 191
EF NT+SGSLT+
Sbjct: 61 EFGNTESGSLTV 72
>gi|340960531|gb|EGS21712.1| transcription factor iiib-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 842
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 99/181 (54%), Gaps = 4/181 (2%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVYELG 74
+ A + Y +A NF +GRR V A CLY CR +++ +LIDF++ + +V+ LG
Sbjct: 160 VTEKAFQLYKVAANSNFIQGRRKNTVAAICLYATCRKEENNKVMLIDFADIIKTDVFLLG 219
Query: 75 AVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWI 133
Y +L +L E + ++ IF +F +L KV +A I M+ D I
Sbjct: 220 RSYKELLALLPDVKEGSKPVIIEDLIF--RFASKLEFLHDTNKVAMSAIRIAQRMRHDNI 277
Query: 134 TTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIED 193
T GR+P+G+CGAAL ++A H + + ++V I + ATL +R+ EF N S +T+++
Sbjct: 278 THGRRPAGICGAALIMAARAHNYRRTVREVVYIAKVTMATLQERMEEFANVPSAQMTVQE 337
Query: 194 F 194
F
Sbjct: 338 F 338
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 27/138 (19%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D F+D D EV +E++ K++IW N++Y+ + K A A+ N
Sbjct: 627 DEFAD--DPEVIYCKLDEKDVMIKEMIWANHNKDYMRKMQQKIFEAKMAQ--------NG 676
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 458
P K ++ + +K + PA +ALEA + ML + +SSK++
Sbjct: 677 P-----------------PKPKRNRAKKPRIGEGQTAPAGSALEAAQNMLRTRAISSKLD 719
Query: 459 YDVLEKLFDDSVCLYSIS 476
Y + LFD L S S
Sbjct: 720 YSRMGNLFDPKGSLGSKS 737
>gi|85082526|ref|XP_956934.1| hypothetical protein NCU04523 [Neurospora crassa OR74A]
gi|28918015|gb|EAA27698.1| predicted protein [Neurospora crassa OR74A]
Length = 878
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 12/199 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 59
M+Q L IG+S I +A R+Y NF +GRR + V A CLY ACR + + +L
Sbjct: 144 MQQYSYQLRIGQS--ISDIAFRYYKACSHANFVQGRRKQNVAAICLYAACRAENNHKIML 201
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTDRL-LPGGNK 115
ID ++ L+ +V+ LG Y L P + +++F +L
Sbjct: 202 IDLADLLHTDVFALGRGYKDFLNRF-----PEFLTGPRPIVIEDLIYRFASKLEFLHDTN 256
Query: 116 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 175
KV +A I M+ D IT GR+P+G+CGAAL ++A H + + ++V IV + AT+
Sbjct: 257 KVALSAVRIAKRMQHDNITHGRRPAGICGAALIMAARAHNYRRTVREVVYIVKVTMATIQ 316
Query: 176 KRLIEFENTDSGSLTIEDF 194
+R+ EF + + +T++DF
Sbjct: 317 ERMDEFASVPAAQMTVQDF 335
>gi|321468451|gb|EFX79436.1| hypothetical protein DAPPUDRAFT_304854 [Daphnia pulex]
Length = 638
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 117/193 (60%), Gaps = 8/193 (4%)
Query: 4 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 63
M LN+ + + +A FY +A+ R+ T GR++ A+C+Y+ CR + LLID +
Sbjct: 95 MGQQLNLNQ--HCIDMAVNFYAMALTRHLTNGRKSSHTVAACIYITCRMEGTAHLLIDIA 152
Query: 64 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTAR 122
+ ++I+VY LG ++Q+ + ++ + VDP +++ ++ +R+ G +V TA
Sbjct: 153 DVIDIDVYTLGHNFMQIAKTFNLS-----IPSVDPCLYVMRYANRMNFGDKTHEVSRTAL 207
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
++ MKRDWI TGR+PSGLCGAAL ++A HG + D+++ V + E T+ KR+ EF
Sbjct: 208 RLVQRMKRDWIHTGRRPSGLCGAALLLAARFHGFNRTVVDVIREVKVHENTVRKRMQEFG 267
Query: 183 NTDSGSLTIEDFM 195
T S L+IE+FM
Sbjct: 268 ETASSDLSIEEFM 280
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 24/129 (18%)
Query: 337 GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 396
G + IDD E+D Y+ E E +W +N E+++E LEA
Sbjct: 420 GELDLEGIDDSEMDSYIRTEYEVKMTSDMWMAINGEFMKE--------------LEAK-- 463
Query: 397 NCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSK 456
Q + + RK K +R + SG T EA +ML KR+S+K
Sbjct: 464 ------QKRKAEEEEEKQKRGEKRKRKTGRRQPQQSYSG--STPGEAIGKMLVGKRISNK 515
Query: 457 INYDVLEKL 465
INYD L+ L
Sbjct: 516 INYDKLKDL 524
>gi|336471108|gb|EGO59269.1| hypothetical protein NEUTE1DRAFT_145317 [Neurospora tetrasperma
FGSC 2508]
gi|350292195|gb|EGZ73390.1| hypothetical protein NEUTE2DRAFT_149471 [Neurospora tetrasperma
FGSC 2509]
Length = 878
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 12/199 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 59
M+Q L IG+S I +A R+Y NF +GRR + V A CLY ACR + + +L
Sbjct: 144 MQQYSYQLRIGQS--ISDIAFRYYKACSHANFVQGRRKQNVAAICLYAACRAENNHKIML 201
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTDRL-LPGGNK 115
ID ++ L+ +V+ LG Y L P + +++F +L
Sbjct: 202 IDLADLLHTDVFALGRGYKDFLNRF-----PEFLTGPRPIVIEDLIYRFASKLEFLHDTN 256
Query: 116 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 175
KV +A I M+ D IT GR+P+G+CGAAL ++A H + + ++V IV + AT+
Sbjct: 257 KVALSAVRIAKRMQHDNITHGRRPAGICGAALIMAARAHNYRRTVREVVYIVKVTMATIQ 316
Query: 176 KRLIEFENTDSGSLTIEDF 194
+R+ EF + + +T++DF
Sbjct: 317 ERMDEFASVPAAQMTVQDF 335
>gi|393215043|gb|EJD00535.1| hypothetical protein FOMMEDRAFT_159269 [Fomitiporia mediterranea
MF3/22]
Length = 266
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 83/131 (63%), Gaps = 9/131 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYL 78
A R Y +A+ FTKGR V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG +L
Sbjct: 142 AIRMYTLALEHKFTKGRTNMDVIAVCLYIACRQKETRNYMLIDFSDLLQVNVFELGHTFL 201
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTG 136
QL Q L + L VDPS ++ +F LL G++ KV A ++A RDW++ G
Sbjct: 202 QLVQTLNLR-----LPLVDPSHYISRFAA-LLESGDETLKVAADAARLVARFDRDWMSRG 255
Query: 137 RKPSGLCGAAL 147
R+P G+CG++L
Sbjct: 256 RRPVGICGSSL 266
>gi|189204338|ref|XP_001938504.1| transcription factor tfiiib complex subunit brf1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985603|gb|EDU51091.1| transcription factor tfiiib complex subunit brf1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 720
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 111/202 (54%), Gaps = 14/202 (6%)
Query: 5 KNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFL 58
KNA+ ++ + + ++ A +Y +++ NF +GRR V A +Y+A R Q +
Sbjct: 126 KNAIEALGASLNQREAVIEQAVSWYKLSMNFNFVQGRRMRNVAAISIYMAARRQPENTLM 185
Query: 59 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL-----KQVDPSIFLHKFTDRLLPGG 113
LID + + NV+ LG Y + + D + ++ ++++P + K+ +L G
Sbjct: 186 LIDLAEKIQTNVWVLGDTYKSFLKTMKEKDPAQLIGNKAVQEIEP--LMLKYCRKLEFGD 243
Query: 114 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+ +V D A +L M RDW+ GR+P+GLCGA + ++A + + + ++V +V + ++
Sbjct: 244 DSHRVADDACKVLKRMNRDWMVQGRQPAGLCGACIIIAARMNNFRRTIREVVYVVKVADS 303
Query: 173 TLMKRLIEFENTDSGSLTIEDF 194
T+ RL E++ T S +LT++ F
Sbjct: 304 TITSRLYEYKRTQSAALTVKQF 325
>gi|47213352|emb|CAF92975.1| unnamed protein product [Tetraodon nigroviridis]
Length = 446
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 117/437 (26%), Positives = 175/437 (40%), Gaps = 125/437 (28%)
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA ++ MKRDW+ TGR+PSGLCGAAL V+A H + + D++ +V +C+ TL KRL
Sbjct: 2 TALRLVQRMKRDWMHTGRRPSGLCGAALLVAARMHKFRRTVKDVISVVKVCQTTLRKRLT 61
Query: 180 EFENTDSGSLTIEDFM-----------------------------ARKKELHEG------ 204
EFE+T + LTI++FM RK + EG
Sbjct: 62 EFEDTPTSQLTIDEFMRVDLEQECDPPSFTAGQHKTKMQQLEQELTRKLDDVEGEISCYK 121
Query: 205 --VAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQ 262
+ L + PK+ G+ ++TG P C + E + ++ L DP +
Sbjct: 122 NEIETELEKSRPKLRGIYAACT--QETG-PILCHQVQYPQTEELLLTPSLVTLPDPANAE 178
Query: 263 V-------AERERMVKASA------------EENSSFERES------DSPFMSRVDKVQS 297
V AE E V+A+A +E + R++ D P RV+ +
Sbjct: 179 VLSVNPDPAEPEDEVQAAAQRLTQDFLCHVIQEEEGWARKAEDGEPRDHPVKDRVECLHK 238
Query: 298 PEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVD------- 350
P +G A + + H ++ + G + IDD E++
Sbjct: 239 APP--LGAILGNLPSAAGLDLQ-QHLESAAEPEAEQVEGGELDLDGIDDQEIEKVPGLWS 295
Query: 351 --------GYLH--------------NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 388
G LH N++E K +W + N EYL+EQ KEA K
Sbjct: 296 SPLTCLCGGRLHHLLDSERLLLQYILNDKEVEVKTELWMKQNAEYLKEQKEKEARIQKEK 355
Query: 389 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 448
+ +Y A K R++K+ A TA EA ML
Sbjct: 356 E--QGTY--------------KEKAKKPKKKREQKE------------ASTAGEAIEMML 387
Query: 449 TKKRLSSKINYDVLEKL 465
+K++SSKINYDVL L
Sbjct: 388 ERKKISSKINYDVLRHL 404
>gi|330927787|ref|XP_003301998.1| hypothetical protein PTT_13669 [Pyrenophora teres f. teres 0-1]
gi|311322865|gb|EFQ89897.1| hypothetical protein PTT_13669 [Pyrenophora teres f. teres 0-1]
Length = 729
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 110/202 (54%), Gaps = 14/202 (6%)
Query: 5 KNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFL 58
KNA+ ++ + + ++ A +Y +++ NF +GRR V A +Y+A R Q +
Sbjct: 129 KNAIQALGASLNQREAVIEQAFSWYKLSMNFNFIQGRRMRNVAAISIYMAARRQPENTLM 188
Query: 59 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL-----KQVDPSIFLHKFTDRLLPGG 113
LID + + NV+ LG Y + + D + ++ ++++P + K+ +L G
Sbjct: 189 LIDLAEKIQTNVWVLGDTYKSFLKTMKERDPAQLVGNKAVQEIEP--LMLKYCRKLEFGD 246
Query: 114 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+ +V D A +L M RDW+ GR+P+GLCGA + ++A + + + ++V +V + ++
Sbjct: 247 DSHRVADDACKVLKRMNRDWMVQGRQPAGLCGACIIIAARMNNFRRTIREVVYVVKVADS 306
Query: 173 TLMKRLIEFENTDSGSLTIEDF 194
T+ RL E++ T S +LT+ F
Sbjct: 307 TITSRLYEYKRTQSAALTVNQF 328
>gi|346973176|gb|EGY16628.1| transcription factor tfiiib complex subunit brf1 [Verticillium
dahliae VdLs.17]
Length = 735
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 112/209 (53%), Gaps = 18/209 (8%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR---------QKSKPFLLIDFSNYL 66
IV A + +A+ + FT+GR + V A+C+Y A R ++++ +++D ++
Sbjct: 156 IVDKAVATFKLAMGQGFTQGRTLQMVCAACIYYAFRSQERVEGNERETQFVMMLDLADLT 215
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDIL 125
+NV+ LG + L + I ++ + P +H+ +L G KV + A ++
Sbjct: 216 RLNVFRLGRCFKALVNKVPIG---SLACTIFPEDIIHRLATKLDFGPQTDKVAEDAVRLI 272
Query: 126 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 185
SM+RDWI GR+PSG+CGA L ++A + + + ++V IV + T+ +R+ EF T
Sbjct: 273 TSMRRDWIIMGRRPSGICGACLLMAARMNNFRRTMREVVYIVKVTSHTIQERMKEFNETA 332
Query: 186 SGSLTIEDFMARKKELHEGVAANLPNNGP 214
+ LTI+DF+ + E +A P++ P
Sbjct: 333 ASQLTIDDFLTKDWE-----SAGPPSHDP 356
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 29/129 (22%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D F+D D EV L + EE K+I+W N+++L + +E LEA
Sbjct: 549 DEFAD--DVEVMNALLSPEEVKLKEIVWVNENQDWLRKNQQREF-----DRKLEAGKPKR 601
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 458
P +++ + R EA+ S PA T +EA + ++ +S ++N
Sbjct: 602 P---------------------RKRNKPRLGEAQTS-PASTPIEAAQNVMKHHGMSKRLN 639
Query: 459 YDVLEKLFD 467
YD + L +
Sbjct: 640 YDAISSLLN 648
>gi|367033853|ref|XP_003666209.1| hypothetical protein MYCTH_2310743 [Myceliophthora thermophila ATCC
42464]
gi|347013481|gb|AEO60964.1| hypothetical protein MYCTH_2310743 [Myceliophthora thermophila ATCC
42464]
Length = 852
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 100/199 (50%), Gaps = 12/199 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKR---FYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKP 56
M Q + L I HVA++ Y A NF +GRR V A C+Y CR++ +
Sbjct: 147 MNQFAHQLQIAP-----HVAEKAFQVYKFASNSNFIQGRRKNTVAAVCIYAVCRKEDNNK 201
Query: 57 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNK 115
+LID ++ + +V+ LG Y L L D + K + + +F +L
Sbjct: 202 VMLIDLADIIKTDVFLLGRSYKDLLNAL--PDMKDGTKPIIIEDLIFRFASKLEFLHDTN 259
Query: 116 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 175
KV +A I M+ D IT GR+P+G+CGAAL ++A H + + ++V I + ATL
Sbjct: 260 KVALSAIRIAQRMRHDNITHGRRPAGICGAALIMAARAHNYRRTVREVVYIAKVTMATLQ 319
Query: 176 KRLIEFENTDSGSLTIEDF 194
+R+ EF N S +T+ DF
Sbjct: 320 ERMEEFANVPSAQMTVRDF 338
>gi|145536716|ref|XP_001454080.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421824|emb|CAK86683.1| unnamed protein product [Paramecium tetraurelia]
Length = 438
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 105/214 (49%), Gaps = 21/214 (9%)
Query: 12 ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI-NV 70
E E +A+R + N K + + LY R K+ P+LLI+ S + +
Sbjct: 50 EYKEAFEIARRLLKFYKSENSIKN--GQYFAGAALYFGFRCKNAPYLLIEISELIKKESA 107
Query: 71 YELGAVYLQL-------CQVLYIADESNVLKQVDPSIFLHKFTDRLLP---GGNKKVCDT 120
++ YL+L +V I + L+ +DPSI++ KF RLL +K++ +T
Sbjct: 108 TKVAKCYLKLLKFVKLDAKVPQIVQLAKSLQYIDPSIYIPKFV-RLLEISRDKHKQIVET 166
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A ++ M DW+ GR+PS LCGAAL +SA HG S S + K V +C+ T+ KRL E
Sbjct: 167 AMKLIKRMMLDWMAYGRRPSSLCGAALLISARFHGENVSTSQVCKTVQVCDETIRKRLAE 226
Query: 181 FENTDSGSLTIEDFMARKKELHEGVAANLPNNGP 214
F T LT E F E E + +P GP
Sbjct: 227 FNQTGLSQLTREQF-----EQIENIETGIP--GP 253
>gi|261200727|ref|XP_002626764.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
dermatitidis SLH14081]
gi|239593836|gb|EEQ76417.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
dermatitidis SLH14081]
Length = 777
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 43/193 (22%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 61
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 140 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 197
Query: 62 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
F++ L + E G+ +Q V A
Sbjct: 198 FADVL---MLEFGSSMMQ-------------------------------------VASEA 217
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL EF
Sbjct: 218 VRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNEF 277
Query: 182 ENTDSGSLTIEDF 194
+ T+SG LT++ F
Sbjct: 278 KATESGDLTVDQF 290
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 343 DID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 396
DID D EV L + E K+ IW N++YL Q AK A A+ E
Sbjct: 446 DIDASEFDSDPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAE---EEDLI 502
Query: 397 N--CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 454
N P + ++ V + + + + + A T EATRRML K+ S
Sbjct: 503 NGRVPGITRRPRKRRKGRMGDVGYLEGKGENGEDVDGRGTR-ASTPAEATRRMLEKRGFS 561
Query: 455 SKINYDVLEKLFDD 468
KINY +LE++++D
Sbjct: 562 KKINYRLLEEMYED 575
>gi|367044868|ref|XP_003652814.1| hypothetical protein THITE_2114603 [Thielavia terrestris NRRL 8126]
gi|347000076|gb|AEO66478.1| hypothetical protein THITE_2114603 [Thielavia terrestris NRRL 8126]
Length = 845
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 98/199 (49%), Gaps = 12/199 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS-KPFLL 59
M Q + L I +V A R Y A NF +GRR V A CLY CR++ +L
Sbjct: 153 MNQFAHQLRI--PLHLVDKAHRLYRAASTSNFIQGRRKHTVAAVCLYAICRKEDHNKVML 210
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTDRL-LPGGNK 115
ID ++ + +V+ LG Y L + N+ + P I + +F +L
Sbjct: 211 IDLADIIKTDVFLLGKSYKDL-----LNSHPNLKEGTKPIIIEDLIFRFASKLEFLHDTN 265
Query: 116 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 175
KV +A I M+ D IT GR+P+G+CGAAL ++A H + + ++V I + ATL
Sbjct: 266 KVALSAVRIAQRMRHDNITHGRRPAGICGAALIMAARAHNYRRTVREVVYIAKVTMATLQ 325
Query: 176 KRLIEFENTDSGSLTIEDF 194
+R+ EF N + +T+ F
Sbjct: 326 ERMEEFANVPAAQMTVAQF 344
>gi|291416192|ref|XP_002724331.1| PREDICTED: transcription initiation factor IIIB, partial
[Oryctolagus cuniculus]
Length = 502
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 67/99 (67%), Gaps = 1/99 (1%)
Query: 98 PSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 156
P +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H
Sbjct: 1 PCLYIPRFAHLLEFGERNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDF 60
Query: 157 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
+ + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 61 RRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFM 99
>gi|312379936|gb|EFR26073.1| hypothetical protein AND_08083 [Anopheles darlingi]
Length = 557
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 112/412 (27%), Positives = 168/412 (40%), Gaps = 135/412 (32%)
Query: 110 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 169
L G + + TA+ ++ MK+D I +GR+PSGLCGAAL ++A H + +DIV+IV I
Sbjct: 37 LSGEDTRSVMTAQRLVQRMKKDSIHSGRRPSGLCGAALLLAARMHDFGRTPNDIVRIVKI 96
Query: 170 CEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDT 229
E+TL KRL EF T S +LT++
Sbjct: 97 HESTLRKRLFEFGETPSSALTVD------------------------------------- 119
Query: 230 GKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA---ERERMVKA----------SAEE 276
EFM + LE PPAF+ A ++ER+ K AE
Sbjct: 120 --------------EFMAVD--LEAEQGPPAFKAARKKDKERLQKLEEQTTEFNQLQAEI 163
Query: 277 NSSFERE----------SDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGD----H 322
+++ +RE S F+ D Q E ++ V + C + +G GD
Sbjct: 164 DAALDREMNGRGGKRRRSKYDFIELQDSDQFIEESNMSVIRECVSDAGVVDGTGDLGQQG 223
Query: 323 TKTPGVD---------------------------ATTEASDGSDNFSDIDDFEVDGYLHN 355
+ P V+ T+E DG D++D E+D Y+
Sbjct: 224 SGVPKVEHKPCIPEGLKPDLKAMCKVSVEVTVPEKTSEQDDGELITDDLNDDEMDAYIMT 283
Query: 356 EEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAA 415
EEE + K +W ++N EYL+E KE AA K EG ++ A
Sbjct: 284 EEEANTKNQLWMQLNEEYLKELQVKEERAA----------KQREEGKPEKKKRRTTKRKA 333
Query: 416 VAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 467
+ GP+ TA EA ++L +K++S+KINYD+L+ L D
Sbjct: 334 I------------------GPSSTAREAIEKILQEKKISNKINYDILKTLTD 367
>gi|171691422|ref|XP_001910636.1| hypothetical protein [Podospora anserina S mat+]
gi|170945659|emb|CAP71772.1| unnamed protein product [Podospora anserina S mat+]
Length = 835
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Query: 15 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVYEL 73
++ A Y AV ++ KGRR V A C+Y ACR K +L+D ++ + +V+ L
Sbjct: 148 DVADTAMDIYREAVRASYVKGRRKHNVAAVCMYAACRLANQKQIMLLDLADIVKTDVFLL 207
Query: 74 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWI 133
G Y +L + L D ++ IF L NK V ++A I M +D I
Sbjct: 208 GRNYKELMRRLPTFDTGYDPLTLENLIFRFAAKLEFLHDTNK-VANSALRIAHRMVKDNI 266
Query: 134 TTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIED 193
+ GR+P+G+ GAA+ ++A H + + ++V + + ATL +R+ EF + SL+I
Sbjct: 267 SIGRRPAGISGAAIIMAARAHNFRRTVREVVYVAKVTMATLQERMSEFAAVPAASLSIRQ 326
Query: 194 FMARKKELHEGVAANLP 210
FM + E+H + + P
Sbjct: 327 FM-QGDEMHPEASHDPP 342
>gi|396490241|ref|XP_003843289.1| hypothetical protein LEMA_P073990.1 [Leptosphaeria maculans JN3]
gi|312219868|emb|CBX99810.1| hypothetical protein LEMA_P073990.1 [Leptosphaeria maculans JN3]
Length = 713
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 104/193 (53%), Gaps = 9/193 (4%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVYELG 74
++ A +Y +A+ NF +GRR V A +Y+A R Q LL+D + NV+ LG
Sbjct: 147 VIDQAVGWYKLAMNHNFIQGRRIRNVAAVAIYMAARRQPENTLLLMDLAEKTQTNVWALG 206
Query: 75 AVYLQLCQVLYIADESNV-----LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASM 128
Y + L D + + +++++P + K+ +L + KV D A +L M
Sbjct: 207 DTYKAFLKKLGEDDPATLSGNKAVQEIEP--LMLKYCRKLEFAEASHKVADDACKLLRRM 264
Query: 129 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGS 188
RDW+ GR+P+GLCGA + ++A + + + ++V +V + ++T+ RL E++ T S +
Sbjct: 265 GRDWMVQGRQPAGLCGACIILAARMNNFRRTVREVVYVVKVADSTINSRLYEYKKTPSSA 324
Query: 189 LTIEDFMARKKEL 201
LT++ F ++L
Sbjct: 325 LTVKQFREMGQQL 337
>gi|71667191|ref|XP_820547.1| transcription factor [Trypanosoma cruzi strain CL Brener]
gi|70885896|gb|EAN98696.1| transcription factor, putative [Trypanosoma cruzi]
Length = 602
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
SD++V +A Y +AV N G R + ++ LY CR++ ++ DFS+ + YE
Sbjct: 92 SDDMVEMAVALYKLAVGLNAVSGARP-SILSAVLYAVCRRERTSHMIYDFSDVTGESPYE 150
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG---GNKKVCDTARDILASMK 129
+ + +C+ + L +DPS +H+F +++ G G VC A +L +M+
Sbjct: 151 ILSYMRNICEATHTE-----LPVIDPSCMVHRFAEQMNLGPMTGPVVVC--ALKVLRAMR 203
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSL 189
DWI GR+P G+C AA+ V+ + S ++ V + T+MKRL EF +T + L
Sbjct: 204 DDWIACGRRPMGVCVAAILVACYMFNIPRSPDEVCGFVRLTAGTIMKRLDEFASTTTAGL 263
>gi|407847988|gb|EKG03518.1| hypothetical protein TCSYLVIO_005435 [Trypanosoma cruzi]
Length = 602
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 98/186 (52%), Gaps = 12/186 (6%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
SD++V +A Y +AV N G R + ++ LY CR++ ++ DFS+ + YE
Sbjct: 92 SDDMVEMAVALYKLAVGLNAVSGARP-AILSAVLYAVCRRERTSHMIYDFSDVAGESPYE 150
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG---GNKKVCDTARDILASMK 129
+ + +C+ + L +DPS +H+F +++ G G VC A +L +M+
Sbjct: 151 ILSYMRNICEATHTE-----LPVIDPSCMVHRFAEQMNLGPMTGPVVVC--ALKVLRAMR 203
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSL 189
DWI GR+P G+C AA+ V+ + S ++ V + T+MKRL EF +T + L
Sbjct: 204 DDWIACGRRPMGVCVAAILVACYMFNIPRSPDEVCGFVRLTAGTIMKRLDEFASTTTAGL 263
Query: 190 -TIEDF 194
+I+++
Sbjct: 264 QSIDEY 269
>gi|126631222|gb|AAI33656.1| BRF1 protein [Homo sapiens]
Length = 184
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 56/76 (73%)
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 180 EFENTDSGSLTIEDFM 195
EFE+T + LTI++FM
Sbjct: 62 EFEDTPTSQLTIDEFM 77
>gi|407408753|gb|EKF32070.1| hypothetical protein MOQ_004090 [Trypanosoma cruzi marinkellei]
Length = 602
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 98/192 (51%), Gaps = 13/192 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
M + L+I SD++V +A Y +AV N G R + ++ LY CR++ ++
Sbjct: 82 MLSIARQLDI--SDDMVEMAVALYKLAVGLNAVSGARP-AILSAVLYAVCRRERTSHMIY 138
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG---GNKKV 117
DFS+ + YE+ + +C+ + L +DPS +H+F +++ G G V
Sbjct: 139 DFSDVTGESPYEILSYMRNICEATHTE-----LPVIDPSCMVHRFAEQMNLGSMTGPVVV 193
Query: 118 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
C A +L +M+ DWI GR+P G+C +A+ V+ + S ++ V + T+MKR
Sbjct: 194 C--ALKVLRAMRDDWIACGRRPMGVCVSAILVACYMFNIPRSPDEVCGFVRLTAGTIMKR 251
Query: 178 LIEFENTDSGSL 189
L EF +T + L
Sbjct: 252 LDEFASTTTAGL 263
>gi|296475327|tpg|DAA17442.1| TPA: BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Bos taurus]
Length = 493
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 56/76 (73%)
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 180 EFENTDSGSLTIEDFM 195
EFE+T + LT+++FM
Sbjct: 62 EFEDTPTSQLTVDEFM 77
>gi|74355107|gb|AAI03862.1| BRF1 protein [Homo sapiens]
Length = 161
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 56/76 (73%)
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 180 EFENTDSGSLTIEDFM 195
EFE+T + LTI++FM
Sbjct: 62 EFEDTPTSQLTIDEFM 77
>gi|170043421|ref|XP_001849386.1| transcription factor IIIB 90 kDa subunit [Culex quinquefasciatus]
gi|167866782|gb|EDS30165.1| transcription factor IIIB 90 kDa subunit [Culex quinquefasciatus]
Length = 533
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Query: 97 DPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 155
+P I++ ++ ++L +V TA+ ++ MK+D I +GR+PSGLCGAAL ++A H
Sbjct: 56 NPCIYIMRYANKLEFADKTHEVSMTAQRLVQRMKKDSIHSGRRPSGLCGAALLIAARMHE 115
Query: 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 196
S SDIV+IV I E+TL KRL+EF T S +LT+++FM+
Sbjct: 116 FSRSPSDIVRIVKIHESTLRKRLVEFGETPSSALTLDEFMS 156
>gi|449449894|ref|XP_004142699.1| PREDICTED: uncharacterized protein LOC101217202 [Cucumis sativus]
Length = 236
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 75/131 (57%), Gaps = 26/131 (19%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
++ D+ D EV+ YL+N +E HYKKIIWE++N++YL++QAAK+
Sbjct: 27 EDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKK----------------- 69
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 458
Q L A+AV K K++Q R EA + PAQ TR M KKRLSSK N
Sbjct: 70 -------QGLNVVGASAVVKKSKKRQ--RKTEAPINMPAQADTGTTREMQIKKRLSSKFN 120
Query: 459 YDVLEKLFDDS 469
+DVL+KLF D+
Sbjct: 121 FDVLDKLFSDT 131
>gi|307188627|gb|EFN73337.1| Transcription factor IIIB 90 kDa subunit [Camponotus floridanus]
Length = 205
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 90/172 (52%), Gaps = 24/172 (13%)
Query: 96 VDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTH 154
+DP +++ KF +L G K V TA IL M +D I GR+PSGLCGAAL ++A H
Sbjct: 33 LDPCLYIEKFARKLEFGKETKAVARTATRILQRMNKDSIHIGRRPSGLCGAALLIAARLH 92
Query: 155 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF--------------MARKK- 199
S +DI+KIV + E+TL KRL+EF +T S +LT+++F ARKK
Sbjct: 93 EFNRSPADIIKIVKVHESTLRKRLMEFGDTPSSALTLDEFETVDLEEEDPPAFKAARKKD 152
Query: 200 -ELHEGVAANLPNNGPKVSGMNEVL---CKHK----DTGKPFACGLCRSCYE 243
E +GV +L K + E + C+ K D G +C + R E
Sbjct: 153 RERLQGVLNSLIAKSAKADLVRESVTNCCRQKDYRIDAGSDISCDVGRMSTE 204
>gi|342185178|emb|CCC94661.1| putative transcription factor [Trypanosoma congolense IL3000]
Length = 612
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 9/190 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
M + L++G D++V A Y +AV N G R V ++ LY+ CR++ ++
Sbjct: 80 MATIARQLDVG--DDMVESALGLYKLAVNLNAVTGARP-VVLSAVLYVMCRRERTSHMVF 136
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DF++ + + YE+ A +C+ + DPS +H+F +++ L + V
Sbjct: 137 DFADAIGESPYEILAYMHHICEA-----TRTTIPVADPSCLVHRFAEQMNLGNMTRPVII 191
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A +L +M DWI GR+P G+C AAL V+ + S ++ +V + T+ +RL
Sbjct: 192 CALKVLRAMHDDWIACGRRPLGVCVAALLVACYMFNIPRSPDEVCGLVRLTAGTITRRLD 251
Query: 180 EFENTDSGSL 189
EF T++ L
Sbjct: 252 EFAETNTADL 261
>gi|302423884|ref|XP_003009772.1| transcription factor tfiiib complex subunit brf1 [Verticillium
albo-atrum VaMs.102]
gi|261352918|gb|EEY15346.1| transcription factor tfiiib complex subunit brf1 [Verticillium
albo-atrum VaMs.102]
Length = 681
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 94/176 (53%), Gaps = 13/176 (7%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR---------QKSKPFLLIDFSNYL 66
IV A + +A+ + FT+GR + V A+C+Y A R ++++ +++D ++
Sbjct: 119 IVDKAVATFKLAMGQGFTQGRTLQMVCAACIYYAFRSQERVEGNERETQFVMMLDLADLT 178
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDIL 125
+NV+ LG + L + I ++ + P +H+ +L G KV + A ++
Sbjct: 179 RLNVFRLGRCFKALVNKVPIG---SLACTIFPEDIIHRLATKLDFGPQTDKVAEDAVRLI 235
Query: 126 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
SM+RDWI GR+PSG+CGA L ++A + + + ++V IV + T+ +R+ E
Sbjct: 236 TSMRRDWIIMGRRPSGICGACLLMAARMNNFRRTMREVVYIVKVTSHTIQERMKEI 291
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 29/129 (22%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
D F+D D EV L + EE K+I+W N+++L + +E LEA
Sbjct: 495 DEFAD--DVEVMNALLSPEEVKLKEIVWVNENQDWLRKNQQREF-----DRKLEAGKPKR 547
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 458
P +++ + R EA+ S PA T +EA + ++ +S ++N
Sbjct: 548 P---------------------RKRNKPRLGEAQTS-PASTPIEAAQNVMKHHGMSKRLN 585
Query: 459 YDVLEKLFD 467
YD + L +
Sbjct: 586 YDAISSLLN 594
>gi|336270840|ref|XP_003350179.1| hypothetical protein SMAC_01071 [Sordaria macrospora k-hell]
gi|380095574|emb|CCC07047.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 862
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 22/214 (10%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
M+Q L IG+S I +A R+Y NF +GRR + + + +LI
Sbjct: 142 MQQYSYQLRIGQS--ISDIAFRYYKACSHANFVQGRRKQNGE----------NNHKIMLI 189
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTDRL-LPGGNKK 116
D ++ L ++V+ LG Y ++ L P + +++F +L K
Sbjct: 190 DLADLLKVDVFALGRGYKD-----FLTRFPEFLTGPRPIVIEDLIYRFASKLEFLHDTNK 244
Query: 117 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 176
V +A I M+ D IT GR+P+G+CGAAL ++A H + + ++V IV + AT+ +
Sbjct: 245 VALSAVRIAKRMQHDNITHGRRPAGICGAALIMAARAHNYRRTVREVVYIVKVTMATIQE 304
Query: 177 RLIEFENTDSGSLTIEDFMARKKELHEGVAANLP 210
R+ EF + + LT++DF K L G A + P
Sbjct: 305 RMDEFASVPAAQLTVQDFH-NKDPLEAGPAHDPP 337
>gi|186479065|ref|NP_001117389.1| transcription regulator / translation initiation factor /zinc ion
binding / transcription activator [Arabidopsis thaliana]
gi|332193099|gb|AEE31220.1| transcription regulator / translation initiation factor /zinc ion
binding / transcription activator [Arabidopsis thaliana]
Length = 254
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 141
+LY+ + VDPS F+ +F+++LL G NK+V +TA I+ASMK +W+ TGRKPSG
Sbjct: 1 MLYLTENRKYENLVDPSTFIPRFSNKLLKGAHNKQVVETATHIIASMKSNWMQTGRKPSG 60
Query: 142 LCGAALYVSALTHG 155
+CGAALY +AL+HG
Sbjct: 61 ICGAALYTAALSHG 74
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 95/218 (43%), Gaps = 72/218 (33%)
Query: 254 GGADPPAFQVAERERMV-KASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQ 312
GG+DPP+FQ AE+ERM KAS EEN DK Q+
Sbjct: 74 GGSDPPSFQRAEKERMEEKASTEEN---------------DKQQN--------------- 103
Query: 313 TASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNRE 372
SD S SD+DD E+D Y N +E H +II++ N
Sbjct: 104 ----------------------SDESSTLSDLDDGELDCYFRNPKEVHLVEIIFDHENPG 141
Query: 373 YLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAK 432
Y E++AA A A EAS AA AKSRK+K+Q+RA E K
Sbjct: 142 YDEKEAAALNACNNASNLFEAS------------------KAAAAKSRKDKRQQRAEEEK 183
Query: 433 NSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSV 470
N+ P TA+EA M+ +K+ N D LE+L D S
Sbjct: 184 NAPPPATAMEAVDSMVKRKKFPD-TNCDYLEELLDTSA 220
>gi|9909700|emb|CAC04512.1| transcription factor II B-related factor [Homo sapiens]
gi|74355580|gb|AAI03860.1| BRF1 protein [Homo sapiens]
Length = 134
Score = 90.5 bits (223), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 56/76 (73%)
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 180 EFENTDSGSLTIEDFM 195
EFE+T + LTI++FM
Sbjct: 62 EFEDTPTSQLTIDEFM 77
>gi|389601476|ref|XP_001565544.2| putative transcription factor [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505058|emb|CAM39038.2| putative transcription factor [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 696
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 14/204 (6%)
Query: 5 KNALNIGE----SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ LNI S++ V A Y +A+ N G R V +CLY ACR++ ++
Sbjct: 88 REMLNISRQLEISEDTVERALGIYKVALNLNVVSGTRP-SVLCACLYAACRRERTSHVIY 146
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVC 118
DFS + + + L Q+ YI ++ + +DPS ++ +F +++ L K V
Sbjct: 147 DFSETNGEDPHTI------LSQLKYICHATHTEVPVIDPSCYVQRFAEQMDLGPQTKDVV 200
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A +L +M+ DWI+ GR+P G+C AAL V+ G+ + + +V + T+ KRL
Sbjct: 201 VCALKVLRAMQDDWISCGRRPMGVCAAALLVACYVFGISRTPEQVCGMVRLTSNTIGKRL 260
Query: 179 IEFENTDSGSL-TIEDFMARKKEL 201
EF T + L I+D+ + L
Sbjct: 261 TEFAATPTARLENIDDYQPSNETL 284
>gi|405954038|gb|EKC21579.1| Transcription factor IIIB 90 kDa subunit [Crassostrea gigas]
Length = 503
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 70/130 (53%), Gaps = 25/130 (19%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A F+ +AV R T+GR+T V A+CLY+ INVY LG
Sbjct: 107 IDTAFNFFKMAVNRRMTQGRKTTHVIAACLYI-------------------INVYSLGKT 147
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 135
YLQL + L I + +DP +++ +F +L G +V TA +++ MKRDW+ T
Sbjct: 148 YLQLSRALCIN-----IPAIDPCLYIPRFAHKLEFGEKTHEVSMTALRLVSRMKRDWMHT 202
Query: 136 GRKPSGLCGA 145
GR+PSGLCGA
Sbjct: 203 GRRPSGLCGA 212
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 72/174 (41%), Gaps = 43/174 (24%)
Query: 296 QSPEPESIG---VPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDG- 351
+ P E+IG V K C NE EG+ K A DG + + IDD E++
Sbjct: 274 RKPLQETIGMIDVVKKCV-----NEDEGESEK---------AEDGELDLTGIDDDELEKQ 319
Query: 352 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 411
++ EEE K +W N++YL KE A + E KN PE + +
Sbjct: 320 FVLTEEEIELKTNLWMAENKDYLIALKEKEERLAKER---EEEAKN-PEKKKPKRTRKKR 375
Query: 412 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
A +A EA +++ ++++S+KINYDVL L
Sbjct: 376 VPIQAA---------------------SAEEAIYKVIHERKISNKINYDVLNDL 408
>gi|307192896|gb|EFN75924.1| Transcription factor IIIB 90 kDa subunit [Harpegnathos saltator]
Length = 483
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 59/81 (72%)
Query: 116 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 175
+V TA+ ++ MKRD I +GR+PSGLCGAAL ++A H S +DI+KIV + E+TL
Sbjct: 15 EVSMTAQRVVKRMKRDSIHSGRRPSGLCGAALLIAARLHEFNRSPADIIKIVKVHESTLR 74
Query: 176 KRLIEFENTDSGSLTIEDFMA 196
KRL+EF +T S +LT+++FM
Sbjct: 75 KRLMEFGDTPSSALTLDEFMT 95
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 30/125 (24%)
Query: 341 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 400
+DIDD E+D Y+ +E+E +YK +W+++N EYL
Sbjct: 239 INDIDDEELDSYILSEKESNYKSALWKKVNAEYL-------------------------- 272
Query: 401 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 460
+E + ++KR KN PA TA EA +ML +K++ S INY+
Sbjct: 273 ----VKEKEKEEKRLKETEEGKPEKKRRRTKKNKTPANTAGEAIEKMLQEKKICSLINYE 328
Query: 461 VLEKL 465
L L
Sbjct: 329 ALNIL 333
>gi|157870494|ref|XP_001683797.1| putative transcription factor [Leishmania major strain Friedlin]
gi|68126864|emb|CAJ04697.1| putative transcription factor [Leishmania major strain Friedlin]
Length = 703
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 14/204 (6%)
Query: 5 KNALNIGE----SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ LNI S++ V A Y +A+ N G R V +CLY ACR++ ++
Sbjct: 87 REMLNISRQLEISEDTVERALGIYKVALNLNAVSGTRP-SVLCACLYAACRRERTSHVIY 145
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVC 118
DFS + + + L Q+ YI ++ + +DPS ++ +F +++ L V
Sbjct: 146 DFSEINGEDPHTI------LSQMKYICHATHTEVPVIDPSCYVQRFAEQMDLGPQTTDVV 199
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A +L +M+ DWI+ GR+P G+C AAL V+ G+ + + +V + T+ KRL
Sbjct: 200 VCALKVLRAMQDDWISCGRRPMGVCAAALLVACYVFGISRTPEQVCGMVRLTSNTIGKRL 259
Query: 179 IEFENTDSGSL-TIEDFMARKKEL 201
EF T + L I+D+ + L
Sbjct: 260 TEFAATPTARLENIDDYQPSHETL 283
>gi|401423221|ref|XP_003876097.1| putative transcription factor [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492338|emb|CBZ27612.1| putative transcription factor [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 703
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 14/204 (6%)
Query: 5 KNALNIGE----SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ LNI S++ V A Y +A+ N G R V +CLY ACR++ ++
Sbjct: 87 REMLNISRQLEISEDTVERALGIYKVALNLNAVSGTRP-SVLCACLYAACRRERTSHVIY 145
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVC 118
DFS + + + L Q+ YI ++ + +DPS ++ +F +++ L V
Sbjct: 146 DFSELNGEDPHTI------LSQMKYICHATHTEVPVIDPSCYVQRFAEQMDLGPQTTDVV 199
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A +L +M+ DWI+ GR+P G+C AAL V+ G+ + + +V + T+ KRL
Sbjct: 200 VCALKVLRAMQDDWISCGRRPMGVCAAALLVACYVFGISRTPEQVCGMVRLTSNTIGKRL 259
Query: 179 IEFENTDSGSL-TIEDFMARKKEL 201
EF T + L I+D+ + L
Sbjct: 260 TEFAATPTARLENIDDYQPSHETL 283
>gi|146088536|ref|XP_001466078.1| putative transcription factor [Leishmania infantum JPCM5]
gi|398016374|ref|XP_003861375.1| transcription factor, putative [Leishmania donovani]
gi|134070180|emb|CAM68513.1| putative transcription factor [Leishmania infantum JPCM5]
gi|322499601|emb|CBZ34675.1| transcription factor, putative [Leishmania donovani]
Length = 703
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 14/204 (6%)
Query: 5 KNALNIGE----SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ LNI S++ V A Y +A+ N G R V +CLY ACR++ ++
Sbjct: 87 REMLNISRQLEISEDTVERALGIYKVALNLNAVSGTRP-SVLCACLYAACRRERTSHVIY 145
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVC 118
DFS + + + L Q+ YI ++ + +DPS ++ +F +++ L V
Sbjct: 146 DFSEVNGEDPHTI------LSQMKYICHATHTEVPVIDPSCYVQRFAEQMDLGPQTTDVV 199
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A +L +M+ DWI+ GR+P G+C AAL V+ G+ + + +V + T+ KRL
Sbjct: 200 VCALKVLRAMQDDWISCGRRPMGVCAAALLVACYVFGISRTPEQVCGMVRLTSNTIGKRL 259
Query: 179 IEFENTDSGSL-TIEDFMARKKEL 201
EF T + L I+D+ + L
Sbjct: 260 TEFAATPTARLENIDDYQPSHETL 283
>gi|344238808|gb|EGV94911.1| Transcription factor IIIB 90 kDa subunit [Cricetulus griseus]
Length = 416
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 142/340 (41%), Gaps = 62/340 (18%)
Query: 154 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----------------- 196
H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 2 HDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQR 61
Query: 197 --RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEG 254
R K+L + ++ L ++S + + + +P A G + ++ G +
Sbjct: 62 KLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGALANLSKD----GSGEDS 117
Query: 255 GADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTT--- 311
P + E E + A++ N F RE + +P+ P +
Sbjct: 118 TPSPFCEEDTEDEELEAAASHMNKDFYREL---LGDGGGSEGTGDPDGGSRPLALESLLG 174
Query: 312 --QTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKII 365
TA++ G D + +P D + DG + S IDD E+D Y+ NE E K +
Sbjct: 175 PLPTAASLGISDSIRECISSPSGDPKDTSGDGELDLSGIDDLEIDRYILNESEARVKAEL 234
Query: 366 WEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQ 425
W N EYL EQ KEA A K EL KE +
Sbjct: 235 WMRENAEYLREQKEKEARIAKEK------------------ELGIY---------KEHKP 267
Query: 426 KRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 268 KKSCKRREPILASTAGEAIEKMLEQKKISSKINYSVLRDL 307
>gi|332028619|gb|EGI68654.1| Transcription factor IIIB 90 kDa subunit [Acromyrmex echinatior]
Length = 301
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 64/98 (65%), Gaps = 7/98 (7%)
Query: 101 FLHKFTDRLLPGGNKK--VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 158
F HK L G+K V TA ++ MKRD I +GR+PSGLCGAAL ++A H
Sbjct: 3 FAHK-----LEFGDKTHTVSMTALRVVQRMKRDSIHSGRRPSGLCGAALLIAARLHEFSR 57
Query: 159 SKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 196
S +DI+KIV + E+TL KRL+EF +T S +LT+++FM
Sbjct: 58 STADIIKIVKVHESTLRKRLLEFGDTPSSALTLDEFMT 95
>gi|337283539|ref|YP_004623013.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
gi|334899473|gb|AEH23741.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
Length = 322
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 5/162 (3%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV R +GR E V A+C+Y ACR P L + S+ ++ E+G Y
Sbjct: 137 AARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDISRVDKKEIGRSYRF 196
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 139
+ + L + + +K P+ +++KF D L G ++KV A +IL R +T+G+ P
Sbjct: 197 IARNLNLTPKKLFVK---PTDYVNKFADEL--GLSEKVRRKAVEILEEAYRKGLTSGKSP 251
Query: 140 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+GL AALY+++L G K ++ ++ +I + E T+ R E
Sbjct: 252 AGLVAAALYIASLLEGEKRTQREVAEIARVTEVTVRNRYKEL 293
>gi|337283805|ref|YP_004623279.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
gi|334899739|gb|AEH24007.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
Length = 300
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV R +GR E V A+C+Y ACR P L + S+ ++ E+G Y
Sbjct: 133 AARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDISRVDKKEIGRSYR- 191
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ +++KF D L G ++KV A +IL R +T+G
Sbjct: 192 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRKAVEILEEAYRKGLTSG 244
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|413946302|gb|AFW78951.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
Length = 148
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 52/70 (74%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+RQ+ N L+I + IV A RFY +A+ RNFT+GRRT V A+CLY+ACRQ K +LLI
Sbjct: 79 IRQIVNNLHISGGETIVSKAFRFYELALDRNFTRGRRTTHVAAACLYIACRQSKKAYLLI 138
Query: 61 DFSNYLNINV 70
DFS++L I+V
Sbjct: 139 DFSDHLQISV 148
>gi|357622232|gb|EHJ73796.1| TFIIB-related factor [Danaus plexippus]
Length = 458
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 54/76 (71%)
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA ++ MKRD I +GR+PSG+CGAAL ++A H + +D+V+IV I E TL KRL+
Sbjct: 2 TALRLVQRMKRDSIHSGRRPSGVCGAALLIAARLHDFSRTPTDVVRIVKIHETTLRKRLL 61
Query: 180 EFENTDSGSLTIEDFM 195
EF T S +LT+++FM
Sbjct: 62 EFGETPSSALTLDEFM 77
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 27/117 (23%)
Query: 349 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQEL 408
+D + +EE +K ++W +N YL+EQ KE E K EG
Sbjct: 237 LDSLIMTDEEARHKTLLWHNINAGYLKEQKIKE----------EIRAKEREEG------- 279
Query: 409 AAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
K+K+ + + + K + TA EA +ML +K++SSKINYD+L+ L
Sbjct: 280 ----------KDKKKKTRGSYKKKVAITGATAGEAVGKMLAEKKMSSKINYDILKSL 326
>gi|223994943|ref|XP_002287155.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976271|gb|EED94598.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 386
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%)
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA ++A MKRDWI GR+P+G+C AAL +++ HG D+ K++ +C T+M R+
Sbjct: 2 TALRLVARMKRDWIVAGRRPAGICAAALLIASRAHGFDRQHHDVTKVLRVCGLTVMSRVK 61
Query: 180 EFENTDSGSLTIEDF 194
EFE T S LT+E+F
Sbjct: 62 EFEATPSAGLTLEEF 76
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 18/123 (14%)
Query: 348 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 407
EVD H ++E ++ ++ NREY+E Q KE A+AA +A ++
Sbjct: 258 EVDFLFHTDDEVREREAVFNLQNREYIEIQHQKENERLLAEAASKAKQED---------- 307
Query: 408 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQ-TALEATRRMLTKKRLSSKINYDVLEKLF 466
+A+ ++ + + A+ P + T EA ++ +++S KINYD + LF
Sbjct: 308 -------EIAQEEGRRRYLKTSRARKRNPNELTTEEALLEVVRTRKISRKINYDAMSALF 360
Query: 467 DDS 469
DD+
Sbjct: 361 DDT 363
>gi|261333929|emb|CBH16923.1| transcription factor IIIb, putative [Trypanosoma brucei gambiense
DAL972]
Length = 543
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 7/184 (3%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A + SD++V A Y +AV+ N G R + + LY CR++ ++ DF++
Sbjct: 19 ARQLDVSDDMVEAALGLYKLAVSLNAVSGARP-AILCAVLYAMCRRERTSHMVFDFADAT 77
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDIL 125
+ Y++ + +C+ A + V +DPS +H+F +++ L + V A +L
Sbjct: 78 GESPYDILSYMHLVCE----ATRTEV-PVIDPSCVVHRFAEQMNLGQMTRSVVVCALKVL 132
Query: 126 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 185
+M DWI GR+P G+C AAL V+ + S ++ V + T+ +RL EF T
Sbjct: 133 RAMHDDWIACGRRPLGVCVAALLVACYMFNIPRSPDEVCGFVRLTAGTISRRLDEFAATS 192
Query: 186 SGSL 189
+ +L
Sbjct: 193 TAAL 196
>gi|389852789|ref|YP_006355023.1| transcription initiation factor IIB [Pyrococcus sp. ST04]
gi|388250095|gb|AFK22948.1| transcription initiation factor IIB [Pyrococcus sp. ST04]
Length = 261
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + S+ + E+G Y
Sbjct: 94 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYR- 152
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ +++KF D L G ++KV A +IL R +T+G
Sbjct: 153 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEAYRRGLTSG 205
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 206 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 250
>gi|361127358|gb|EHK99329.1| putative Transcription factor IIIB 60 kDa subunit [Glarea
lozoyensis 74030]
Length = 775
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 28/196 (14%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
M Q+ L+I ES + H + +AV NF +GRRTE V A
Sbjct: 143 MNQLAQQLHIQES-TVTH-GVQILKLAVMNNFIQGRRTEMVCAP---------------- 184
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 119
NV++LG + L + + + + V P + +F +L G +KV +
Sbjct: 185 ------QCNVFKLGRTFKALHTSVTL---NGGIYPVVPEDLIWRFAAKLEFGQLTEKVAE 235
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A ++ M DW+ GR+PSG+CGA L ++A + + + +++V IV + T+ KRL
Sbjct: 236 DAVRMVQRMSLDWMVVGRRPSGVCGACLILAARMNNFRRTITEVVYIVKVTTHTIQKRLD 295
Query: 180 EFENTDSGSLTIEDFM 195
EF+ T + +LT+++F+
Sbjct: 296 EFKMTPTSNLTVDEFL 311
>gi|71754449|ref|XP_828139.1| transcription factor [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833525|gb|EAN79027.1| transcription factor, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 608
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 7/184 (3%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A + SD++V A Y +AV+ N G R + + LY CR++ ++ DF++
Sbjct: 84 ARQLDVSDDMVEAALGLYKLAVSLNAVSGARP-AILCAVLYAMCRRERTSHMVFDFADAT 142
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDIL 125
+ Y++ + +C+ A + V +DPS +H+F +++ L + V A +L
Sbjct: 143 GESPYDILSYMHLVCE----ATRTEV-PVIDPSCVVHRFAEQMNLGQMTRSVVVCALKVL 197
Query: 126 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 185
+M DWI GR+P G+C AAL V+ + S ++ V + T+ +RL EF T
Sbjct: 198 RAMHDDWIACGRRPLGVCVAALLVACYMFNIPRSPDEVCGFVRLTAGTISRRLDEFAATS 257
Query: 186 SGSL 189
+ +L
Sbjct: 258 TAAL 261
>gi|14591268|ref|NP_143345.1| transcription initiation factor IIB [Pyrococcus horikoshii OT3]
gi|6647871|sp|O59151.1|TF2B_PYRHO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|3257906|dbj|BAA30589.1| 300aa long hypothetical transcription initiation factor IIB
[Pyrococcus horikoshii OT3]
Length = 300
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + S+ + E+G Y
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYR- 191
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ +++KF D L G ++KV A +IL R +T+G
Sbjct: 192 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEAYRRGLTSG 244
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|429963838|gb|ELA45836.1| hypothetical protein VCUG_02677, partial [Vavraia culicis
'floridensis']
Length = 247
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Query: 96 VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 155
+DPS+FLH+F +L N+K+ A +++ MKRDWI GR+P+ LCGAAL ++ +G
Sbjct: 5 IDPSLFLHRFFAKL-KLKNEKILFFAMRLISRMKRDWIVVGRRPNNLCGAALVTASRVYG 63
Query: 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
+ S ++VK V + T+ RL E +T S +LT+ DF
Sbjct: 64 EERSVLEVVKAVRVSPHTINIRLKEMCDTQSANLTVSDFF 103
>gi|18977749|ref|NP_579106.1| transcription initiation factor IIB [Pyrococcus furiosus DSM 3638]
gi|397651869|ref|YP_006492450.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
gi|48429160|sp|P61998.1|TF2B_PYRFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|48429161|sp|P61999.1|TF2B_PYRWO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|1206029|gb|AAC43724.1| TFIIB [Pyrococcus furiosus]
gi|18893488|gb|AAL81501.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
DSM 3638]
gi|393189460|gb|AFN04158.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
Length = 300
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G Y
Sbjct: 133 AARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYR- 191
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 192 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILDEAYKRGLTSG 244
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|332157709|ref|YP_004422988.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
gi|331033172|gb|AEC50984.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
Length = 300
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV R +GR E V A+C+Y ACR P L + S+ + E+G Y
Sbjct: 133 AARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSY-- 190
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ +++KF D L G +++V A +IL + +T+G
Sbjct: 191 ----RFIARNLNLTPKKLFVKPTDYVNKFADEL--GLSERVRRRAIEILEEAYKRGLTSG 244
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|45954|emb|CAA50006.1| transcription factor IIB [Pyrococcus woesei]
Length = 261
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 87/162 (53%), Gaps = 5/162 (3%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G Y
Sbjct: 94 AARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRF 153
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 139
+ + L + + +K P+ +++KF D L G ++KV A +IL + +T+G+ P
Sbjct: 154 IARNLNLTPKKLFVK---PTDYVNKFADEL--GLSEKVRRRAIEILDEAYKRGLTSGKSP 208
Query: 140 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 209 AGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 250
>gi|116195418|ref|XP_001223521.1| hypothetical protein CHGG_04307 [Chaetomium globosum CBS 148.51]
gi|88180220|gb|EAQ87688.1| hypothetical protein CHGG_04307 [Chaetomium globosum CBS 148.51]
Length = 775
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 6/178 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLL 59
M Q + L I + + A + Y A NF +GRR V A C+Y CR++ + +L
Sbjct: 145 MNQFAHQLQI--APLVAEKAFQVYKFASNSNFIQGRRKNTVAAVCVYAVCRKEDNNKVML 202
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 118
ID ++ + +V+ LG Y L L D + K + + +F +L KV
Sbjct: 203 IDLADIIKTDVFLLGRSYKDLLAAL--PDMKDGTKPIIIEDLIFRFATKLEFLHDTNKVA 260
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 176
+A I M+ D IT GR+P+G+CGAAL ++A H + + ++V I + TL +
Sbjct: 261 LSAIRIAQRMRHDNITHGRRPAGICGAALIMAARAHNYRRTVREVVYIAKVTMTTLQE 318
>gi|2392147|pdb|1AIS|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box
Complex From Pyrococcus Woesei
Length = 200
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G Y
Sbjct: 33 AARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYR- 91
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 92 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILDEAYKRGLTSG 144
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 145 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 189
>gi|6573567|pdb|1D3U|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA-
Box Complex From Pyrococcus Woesei
Length = 201
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G Y
Sbjct: 34 AARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYR- 92
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 93 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILDEAYKRGLTSG 145
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 146 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 190
>gi|14520892|ref|NP_126367.1| transcription initiation factor IIB [Pyrococcus abyssi GE5]
gi|13878809|sp|Q9V0V5.1|TF2B_PYRAB RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|5458109|emb|CAB49598.1| TATA box binding protein TFIIB-BBRE complex, chain B [Pyrococcus
abyssi GE5]
gi|380741440|tpe|CCE70074.1| TPA: transcription initiation factor IIB [Pyrococcus abyssi GE5]
Length = 300
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + S+ + E+G Y
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYR- 191
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 192 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEAYKRGLTSG 244
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|156062930|ref|XP_001597387.1| hypothetical protein SS1G_01581 [Sclerotinia sclerotiorum 1980]
gi|154696917|gb|EDN96655.1| hypothetical protein SS1G_01581 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 708
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 29/196 (14%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
M+ + N L I E+ +V V + + +A NF +GRRT+ V A
Sbjct: 127 MQALANQLGISEN--VVGVGHQIFKLASMNNFIQGRRTDLVAA----------------- 167
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
+NV+ LG + L + + +A ++ + V P + KF +L +KV D
Sbjct: 168 -------VNVFTLGRYFKALHKQISLA--TDGILPVLPEDLIWKFASKLEFYEQTEKVAD 218
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A ++ M DW+ GR+PSG+CGA L ++A + + + +++V +V + AT+ KRL
Sbjct: 219 DAIRMVRRMSLDWMVMGRRPSGVCGACLILAARMNNFRRTVTEVVYVVKVTTATIQKRLE 278
Query: 180 EFENTDSGSLTIEDFM 195
EF+ T S +LT+E+F+
Sbjct: 279 EFKRTPSSALTVEEFL 294
>gi|290559596|gb|EFD92924.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidophilus ARMAN-5]
Length = 307
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 9/181 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R+ N L++ S+ I A + Y A+ R +GR E V A LY A R+ ++P L
Sbjct: 122 LRRASNRLHV--SNIIQEEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITLD 179
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ S+ + E+G Y LC+ L I + PS +++KF L NK V D
Sbjct: 180 EISDTFEVERKEVGKAYRLLCRELGIK-----ILPTSPSDYIYKFASE-LKVSNKTVSDA 233
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+ +L + +T+G+ P G+ A LYVS L + K ++ D K I E T+ R E
Sbjct: 234 VK-LLKEAEDKGLTSGKGPMGIAAAVLYVSTLINKEKKTQRDAAKAAGITEVTIRNRYKE 292
Query: 181 F 181
Sbjct: 293 L 293
>gi|193788404|dbj|BAG53298.1| unnamed protein product [Homo sapiens]
Length = 439
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 139/371 (37%), Gaps = 123/371 (33%)
Query: 154 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI---------------------- 191
H + + +++ +V +CE+TL KRL EFE+T + LTI
Sbjct: 2 HDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQR 61
Query: 192 -------EDFMARKKELHEG--------VAANLPNNGPKVSGMNEVLCKH---KDTGKPF 233
E +++K E EG + L N+ PK G L K +DT
Sbjct: 62 KLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGSTEDTASSL 121
Query: 234 ACG---------------LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENS 278
CG L + Y E + GGA S+E
Sbjct: 122 -CGEEDTEDEELEAAASHLNKDLYRELL-------GGA--------------PGSSEAAG 159
Query: 279 SFERESDSPFM-SRVDKVQSPEPESIGVP---KNCTTQTASNEGEGDHTKTPGVDATTEA 334
S E P + S +D + P S+G+ + C + +S D +
Sbjct: 160 SPEWGGRPPALGSLLDPL--PTAASLGISDSIRECISSQSS-------------DPKDAS 204
Query: 335 SDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 394
DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 205 GDGGLDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK------ 258
Query: 395 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 454
EL KE + K++ + + A TA EA +ML +K++S
Sbjct: 259 ------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKKIS 297
Query: 455 SKINYDVLEKL 465
SKINY VL L
Sbjct: 298 SKINYSVLRGL 308
>gi|57641215|ref|YP_183693.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|73919861|sp|Q5JGN1.1|TF2B1_PYRKO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|57159539|dbj|BAD85469.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 300
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G +
Sbjct: 133 AARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSRVDKKEIGRSFR- 191
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 192 -----FIARHLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEAYQRGLTSG 244
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLMEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|338753412|ref|NP_001229718.1| transcription factor IIIB 90 kDa subunit isoform 7 [Homo sapiens]
Length = 439
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 139/371 (37%), Gaps = 123/371 (33%)
Query: 154 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI---------------------- 191
H + + +++ +V +CE+TL KRL EFE+T + LTI
Sbjct: 2 HDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQR 61
Query: 192 -------EDFMARKKELHEG--------VAANLPNNGPKVSGMNEVLCKH---KDTGKPF 233
E +++K E EG + L N+ PK G L K +DT
Sbjct: 62 KLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGSTEDTASSL 121
Query: 234 ACG---------------LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENS 278
CG L + Y E + GGA S+E
Sbjct: 122 -CGEEDTEDEELEAAASHLNKDLYRELL-------GGA--------------PGSSEAAG 159
Query: 279 SFERESDSPFM-SRVDKVQSPEPESIGVP---KNCTTQTASNEGEGDHTKTPGVDATTEA 334
S E P + S +D + P S+G+ + C + +S D +
Sbjct: 160 SPEWGGRPPALGSLLDPL--PTAASLGISDSIRECISSQSS-------------DPKDAS 204
Query: 335 SDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 394
DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 205 GDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK------ 258
Query: 395 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 454
EL KE + K++ + + A TA EA +ML +K++S
Sbjct: 259 ------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKKIS 297
Query: 455 SKINYDVLEKL 465
SKINY VL L
Sbjct: 298 SKINYSVLRGL 308
>gi|315230862|ref|YP_004071298.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183890|gb|ADT84075.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 299
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV R +GR E V A+C+Y ACR P L + ++ ++ E+G +
Sbjct: 133 AARLYREAVRRGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIARVDKKEIGRSFR- 191
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ +++KF D L G ++KV A ++L +T+G
Sbjct: 192 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIELLEEAYNRGLTSG 244
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|156375641|ref|XP_001630188.1| predicted protein [Nematostella vectensis]
gi|156217204|gb|EDO38125.1| predicted protein [Nematostella vectensis]
Length = 114
Score = 79.0 bits (193), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 53/75 (70%)
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +++ MKRDWI GR+PSGLCGAAL V++ H S ++VK+V I + T+ KRL
Sbjct: 2 TALRLVSRMKRDWIHHGRRPSGLCGAALLVASRLHSFNRSVREVVKVVRISDTTIRKRLG 61
Query: 180 EFENTDSGSLTIEDF 194
EF++T S LTI++F
Sbjct: 62 EFKDTPSSQLTIDEF 76
>gi|269986930|gb|EEZ93206.1| transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4]
Length = 307
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 9/181 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R N L++ S+ I A + Y A+ R +GR E V A LY A R+ ++P L
Sbjct: 122 LRHASNRLHV--SNIIQEEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITLD 179
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ S + E+G Y LC+ L I + PS +++KF L G + K
Sbjct: 180 EISETFEVERKEVGKAYRLLCRELGIK-----ILPSSPSDYIYKFASEL--GVSNKTVSD 232
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +L + +T+G+ P G+ A LYV+ L + K ++ D K I E T+ R E
Sbjct: 233 AVKLLKEAEDKGLTSGKGPMGIAAAVLYVATLINKEKKTQRDAAKAAGITEVTIRNRYKE 292
Query: 181 F 181
Sbjct: 293 L 293
>gi|448323476|ref|ZP_21512935.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445599623|gb|ELY53653.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 376
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 88/178 (49%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A++ + +GR E + + LY ACRQ+ P L +
Sbjct: 188 RMSSALGVPRS--VREVASVMYRRALSEDLIRGRSIEGMSTAVLYAACRQEGIPRSLSEV 245
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+ Y + Q L + ++ VDP +L +F +L ++++ A
Sbjct: 246 TEVSRVENKEIARTYRYVSQELELE-----MRPVDPKKYLPRFCSQL--DVSERIQSKAE 298
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + I +G+ P+G AA+Y S+L +G K ++ + ++ + E T+ R E
Sbjct: 299 EIIDTSAEQGILSGKSPTGFAAAAIYSSSLLYGEKKTQKQVAEVAQVTEVTIRNRYQE 356
>gi|315230585|ref|YP_004071021.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183613|gb|ADT83798.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 306
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 7/177 (3%)
Query: 5 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 64
+ A +G I +A Y AV +GR E V A+CLY ACR P L +
Sbjct: 127 RMASQLGLPRNIKEMAAALYRKAVMERLIRGRSIEGVTAACLYAACRMAKVPRTLDEIEE 186
Query: 65 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 124
++ E+G Y + + L++ L P ++ +F D+L G +++ + A I
Sbjct: 187 VARVDKKEIGRSYRFIARELHLR-----LTPTSPIDYVSRFADQL--GLSERTKNRAVKI 239
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
L + +T+GR P G+ AALY++++ G K ++ ++ ++ H+ E T+ R E
Sbjct: 240 LQKAIKLGLTSGRGPMGVAAAALYIASVLEGEKKTQREVAEVAHVTEVTVRNRYKEL 296
>gi|340058194|emb|CCC52548.1| putative transcription factor, fragment [Trypanosoma vivax Y486]
Length = 537
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 9/159 (5%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A + SD++V A Y +AV+ N G R V + LY CR++ ++ DF+
Sbjct: 84 ARQLAVSDDMVETALAVYKMAVSMNAVSGARP-VVLCAALYAVCRRERTSHMVYDFAEVA 142
Query: 67 NINVYELGAVYLQL-CQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDI 124
N Y++ + Y+QL C+ + L +DPS +H+F ++L L V A +
Sbjct: 143 GENPYDILS-YMQLICETTHTD-----LPVIDPSCMVHRFAEQLNLGHQTAAVVICALKV 196
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 163
L +M+ DWI GR+P G+C AAL V+ + S ++
Sbjct: 197 LRAMRDDWIACGRRPMGVCVAALLVACYMFNIPRSPDEV 235
>gi|71394065|gb|AAZ32104.1| archaeal transcriptional initiation factor TFB [uncultured
euryarchaeote Alv-FOS5]
Length = 474
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 7/174 (4%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G I A Y AV + +GR E V A+ +Y+ CRQ P L + S I
Sbjct: 299 LGLPSNIREAAALLYRKAVEKGLIRGRLIESVVAAVIYMICRQYGIPRTLDEISEVSGIT 358
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
E+G Y L + LY+ + +P ++ +F L G + KV + A++IL
Sbjct: 359 KKEIGRTYRFLKKELYVD-----VPLTNPIYYVPRFASAL--GLSGKVQEKAKEILNEAV 411
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 183
+ +GR P+G+ AA+Y++++ G + ++ ++ ++ + E T+ R E +
Sbjct: 412 EKGLISGRGPTGVAAAAVYIASVMMGERRTQKEVAEVAGVTEVTIRNRYRELKR 465
>gi|389851971|ref|YP_006354205.1| transcription initiation factor B [Pyrococcus sp. ST04]
gi|388249277|gb|AFK22130.1| Transcription initiation factor B [Pyrococcus sp. ST04]
Length = 302
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G +
Sbjct: 136 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIARVDKKEIGRSFR- 194
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ ++ KF D L G ++K A +IL + IT+G
Sbjct: 195 -----FIARNLNLTPKKLFVKPTDYVTKFADEL--GLSEKTRRRAVEILEMAYKLGITSG 247
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 248 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 292
>gi|47216762|emb|CAG03766.1| unnamed protein product [Tetraodon nigroviridis]
Length = 514
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 158/398 (39%), Gaps = 126/398 (31%)
Query: 146 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM---------- 195
AL V+A H + + +IV IV +CE TL KRL EF +T + LTIE+FM
Sbjct: 76 ALLVAARMHDFRRTTKEIVGIVKVCEQTLRKRLTEFGDTPTSQLTIEEFMKVDLDQECDP 135
Query: 196 ---------ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKD-------TGKP------- 232
R ++LH ++A + P S + +C ++D T +P
Sbjct: 136 PCFTSGLQKKRIQQLHPKLSACVHAASPSSS---DEICSYQDEIDSELQTSRPKLRGVYA 192
Query: 233 -FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSR 291
+A G C+S E+ +G E E ++A A+ F ++ + +
Sbjct: 193 AYARGDCKSLGEDSACKPDGSE-------------EDDLQAVAK---YFGKDLEELTLEA 236
Query: 292 VDKVQSPEPESI--------GVPKNCTTQTASNEGEGDHTKT---PGVDATTE-----AS 335
+ K++ P P+ VP+ AS G T G + E +S
Sbjct: 237 LIKLEQPRPQEEEEEEEEEDAVPRRKAPSLASILGPMPSAATLDCRGDEKEKEKENGGSS 296
Query: 336 DGSD-NFSDIDDFEVD-------------------------GYLHNEEEKHYKKIIWEEM 369
DG + + S IDD E++ YL +E E K +W
Sbjct: 297 DGGELDLSGIDDQEIELVRPRRRSRPQALLAVPLTLSSACLQYLLSEHEVKVKTALWMAE 356
Query: 370 NREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAA 429
N +YL+EQ KEA A K GL K++KR
Sbjct: 357 NSDYLKEQREKEAKIAKEKEL----------GLY-------------------KEKKRRG 387
Query: 430 EAKNSGP--AQTALEATRRMLTKKRLSSKINYDVLEKL 465
++ P A +A EA +ML +K++SSKINYDVL+ L
Sbjct: 388 PSRKRPPIRAGSADEAIGKMLEQKKISSKINYDVLKDL 425
>gi|223478727|ref|YP_002582898.1| transcription initiation factor iiB [Thermococcus sp. AM4]
gi|214033953|gb|EEB74779.1| Transcription initiation factor iiB [Thermococcus sp. AM4]
Length = 303
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 7/159 (4%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E + ++ LY ACR + P L + + + E+G Y + +
Sbjct: 142 LYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIARVSKVTKKEIGRSYRFMAR 201
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 142
L + L+ P ++ +F D L G + K A++IL + IT+G+ P+GL
Sbjct: 202 GLGLN-----LRPTSPIDYVDRFGDAL--GVSSKTKQRAKEILQEAIKRGITSGKGPTGL 254
Query: 143 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
AALYV++L G K ++ ++ ++ H+ E T+ R E
Sbjct: 255 AAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKEL 293
>gi|240102532|ref|YP_002958841.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910086|gb|ACS32977.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 303
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 7/159 (4%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E + ++ LY ACR + P L + + + E+G Y + +
Sbjct: 142 LYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIARVSKVTKKEIGRSYRFMAR 201
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 142
L + L+ P ++ +F D L G + K A++IL + IT+G+ P+GL
Sbjct: 202 GLGLN-----LRPTSPIDYVDRFGDAL--GVSSKTKQRAKEILQEAIKRGITSGKGPTGL 254
Query: 143 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
AALYV++L G K ++ ++ ++ H+ E T+ R E
Sbjct: 255 AAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKEL 293
>gi|169599398|ref|XP_001793122.1| hypothetical protein SNOG_02518 [Phaeosphaeria nodorum SN15]
gi|160704598|gb|EAT90730.2| hypothetical protein SNOG_02518 [Phaeosphaeria nodorum SN15]
Length = 348
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 49 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL-----KQVDPSIFLH 103
A RQ +L+D + + +NV+ LG Y + L D + ++ ++++P +
Sbjct: 3 ARRQTEITLMLMDLAEKIQVNVWALGDTYKSFLKKLGENDPAQLVGNTAVQEIEP--LML 60
Query: 104 KFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 162
K+ +L G + +V A IL MKRDW+ GR+P+GLCGA + ++A + + + +
Sbjct: 61 KYCRKLEFGDDSFRVAADACKILKRMKRDWMVQGRQPAGLCGACIILAARMNNFRRTVRE 120
Query: 163 IVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194
+V +V + ++T+ RL E++ T S LTI F
Sbjct: 121 VVYVVKVADSTINSRLYEYKQTPSSVLTINQF 152
>gi|350525782|ref|YP_004885404.1| transcription initiation factor B [Thermococcus sp. AM4]
gi|345650601|gb|AEO13966.1| Transcription initiation factor B [Thermococcus sp. AM4]
Length = 300
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + + ++ E+G +
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSRVDKKEIGRSFR- 191
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ ++ KF D L G ++KV A ++L +T+G
Sbjct: 192 -----FIARHLNLTPKKLFVKPTDYVSKFADEL--GLSEKVRRRAIELLEEAYEKGLTSG 244
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY++ + G + ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIAGIMEGERRTQREVAEVARVTEVTVRNRYKEL 289
>gi|11498897|ref|NP_070128.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
gi|14195234|sp|O28970.1|TF2B_ARCFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2649280|gb|AAB89947.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
Length = 326
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 91/179 (50%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + +S + A Y AV +N +GR E V A+ LY ACRQ P L +
Sbjct: 147 RMASALGLPKS--VRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEI 204
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ Y ++ E+G Y + + L + L P+ ++ +F L G + +V A
Sbjct: 205 ATYSRVDRKEIGRTYRFITRELGLK-----LMPTSPADYIPRFCAAL--GLSGEVQKKAI 257
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+I+ + +T+GR P+G+ AALYV+++ G + ++ ++ ++ + E T+ R E
Sbjct: 258 EIIKKAEERELTSGRGPTGVAAAALYVASILLGERRTQREVAEVAGVTEVTIRNRYKEL 316
>gi|240103255|ref|YP_002959564.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910809|gb|ACS33700.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 300
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + + ++ E+G +
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSRVDKKEIGRSFR- 191
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ ++ KF D L G ++KV A ++L +T+G
Sbjct: 192 -----FIARHLNLTPKKLFVKPTDYVSKFADEL--GLSEKVRRRAIELLEEAYEKGLTSG 244
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY++ + G + ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIAGIMEGERRTQREVAEVARVTEVTVRNRYKEL 289
>gi|409095301|ref|ZP_11215325.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 300
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + + ++ E+G +
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSKVDKKEIGRSFR- 191
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V PS +++KF D L G ++KV A ++L +T+G
Sbjct: 192 -----FIARHLNLTPKKLFVKPSDYVNKFADEL--GLSEKVRKRAIELLEEAYNRGLTSG 244
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY++ L + ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIAGLMEEERRTQREVAEVARVTEVTVRNRYKEL 289
>gi|15789908|ref|NP_279732.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235629|ref|YP_001688829.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195246|sp|Q9HRE6.1|TF2B2_HALSA RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10580312|gb|AAG19212.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726695|emb|CAP13481.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 325
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 17/189 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G E+ A Y A++ + GR E V + LY + RQ
Sbjct: 137 RNLKQALGEIERMASALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQL 196
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 112
S P + + +N I+ E Y + + L + + DP+ ++ +F L LP
Sbjct: 197 STPRSIDEVANVSRIDEMEFKRTYRYIVRELSLE-----VAPADPAQYVPRFASDLDLP- 250
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+V +R+++++ + D +T+G+ P GL AA+Y S+L K ++S++ ++ + E
Sbjct: 251 --DEVERRSRELISNAQADGVTSGKSPVGLAAAAIYASSLLTNHKVTQSEVSEVTDVSEV 308
Query: 173 TLMKRLIEF 181
T+ R E
Sbjct: 309 TIRNRYQEL 317
>gi|212224249|ref|YP_002307485.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009206|gb|ACJ16588.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 299
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G +
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEIADISRVDKKEIGRSF-- 190
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ +++KF D L G ++KV A IL +T+G
Sbjct: 191 ----RFIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIAILEEAYEKGLTSG 244
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY++ L K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|331746825|ref|YP_004422862.1| Transcription initiation factor B [Thermococcus barophilus MP]
gi|315185036|gb|ADT85220.1| Transcription initiation factor B [Thermococcus barophilus MP]
Length = 301
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y A+ + +GR E V A+C+Y ACR P L + ++ ++ E+ +
Sbjct: 136 AARLYREAIRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIARVDKKEIARSFR- 194
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ +++KF D L G ++KV A ++L +T+G
Sbjct: 195 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIELLEEAYNRGLTSG 247
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 248 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 292
>gi|291236296|ref|XP_002738076.1| PREDICTED: transcription initiation factor IIIB-like [Saccoglossus
kowalevskii]
Length = 205
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A F+ +AV++ T+GR+T V ++CLYL CR + P +L+DFS+ L +NVY LG
Sbjct: 106 IDTAYNFFKMAVSKRLTRGRKTSHVVSACLYLVCRTEGTPHMLLDFSDILQVNVYVLGKT 165
Query: 77 YLQLCQVLYI 86
YL+L L+I
Sbjct: 166 YLKLSTELHI 175
>gi|212224386|ref|YP_002307622.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009343|gb|ACJ16725.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 303
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 7/167 (4%)
Query: 15 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 74
+ VA Y AV + +GR E + ++ LY ACR + P L + + + E+G
Sbjct: 134 RVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAVSKVTKKEIG 193
Query: 75 AVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWIT 134
Y L + L + L+ P ++ +F D L +++ A++IL + IT
Sbjct: 194 RSYRFLARGLGLN-----LRPTSPIEYIDRFGDSL--DVSQRTKKRAKEILQEAIKRGIT 246
Query: 135 TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+G+ P+GL AALYV++L G K ++ ++ ++ H+ E T+ R E
Sbjct: 247 SGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKEL 293
>gi|390961643|ref|YP_006425477.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390519951|gb|AFL95683.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 298
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 7/167 (4%)
Query: 15 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 74
+ VA Y AV + +GR E + ++ LY ACR + P L + + + E+G
Sbjct: 129 RVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAVSKVTKKEIG 188
Query: 75 AVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWIT 134
Y L + L + L+ P ++ +F D L K A++IL + IT
Sbjct: 189 RSYRFLARGLNLN-----LRPTSPIEYVDRFGDALNVSARTK--KRAKEILREAIKRGIT 241
Query: 135 TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+G+ P+GL AALYV++L G K ++ ++ ++ H+ E T+ R E
Sbjct: 242 SGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKEL 288
>gi|341582974|ref|YP_004763466.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810632|gb|AEK73789.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 303
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 7/167 (4%)
Query: 15 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 74
+ VA Y AV + +GR E + ++ LY ACR + P L + + + E+G
Sbjct: 134 RVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAVSKVTKKEIG 193
Query: 75 AVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWIT 134
Y L + L + L+ P ++ +F D L K A++IL + IT
Sbjct: 194 RSYRFLARGLNLN-----LRPTSPIEYVDRFGDALNVSARTK--KRAKEILHEAIKRGIT 246
Query: 135 TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+G+ P+GL AALYV++L G K ++ ++ ++ H+ E T+ R E
Sbjct: 247 SGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKEL 293
>gi|242398518|ref|YP_002993942.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
gi|242264911|gb|ACS89593.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
Length = 299
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 5/162 (3%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G +
Sbjct: 133 AARLYRDAVKKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADMAKVDKKEIGRSFRF 192
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 139
+ + L + + +K P+ +++KF D L G +++ A ++L + +T+G+ P
Sbjct: 193 IARNLNLTPKKLFVK---PTDYVNKFADEL--GLSERTRRRAIELLDQVYNMGLTSGKSP 247
Query: 140 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+GL AALY++ L G K ++ ++ + + E T+ R E
Sbjct: 248 AGLVAAALYIAGLLEGEKRTQREVAEAARVTEVTVRNRYKEM 289
>gi|414587926|tpg|DAA38497.1| TPA: hypothetical protein ZEAMMB73_605143 [Zea mays]
Length = 316
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 68/119 (57%), Gaps = 24/119 (20%)
Query: 348 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 407
EVDGY HNEEE YKKIIWEEMN+EYLEEQAAKEA A
Sbjct: 67 EVDGYFHNEEETQYKKIIWEEMNKEYLEEQAAKEALA----------------------- 103
Query: 408 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 466
A AA + +K++KR + K+S PA+T EAT ML +K L SKIN +++L+
Sbjct: 104 -AELAARGIDPEAGKKKRKRNEDMKSSTPAETPAEATCNMLKRKGLGSKINVGAVDELY 161
>gi|414884212|tpg|DAA60226.1| TPA: hypothetical protein ZEAMMB73_105752 [Zea mays]
Length = 319
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 68/119 (57%), Gaps = 24/119 (20%)
Query: 348 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 407
EVDGY HNEEE YKKIIWEEMN+EYLEEQAAKEA A
Sbjct: 67 EVDGYFHNEEETQYKKIIWEEMNKEYLEEQAAKEALA----------------------- 103
Query: 408 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 466
A AA + +K++KR + K+S PA+T EAT ML +K L SKIN +++L+
Sbjct: 104 -AELAARGIDPEAGKKKRKRNEDMKSSTPAETPAEATCNMLKRKGLGSKINVGAVDELY 161
>gi|448316712|ref|ZP_21506293.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445607127|gb|ELY61021.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 318
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 91/178 (51%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V SCLY+ACRQ+S P L +
Sbjct: 142 RMASALGVPRS--VREVASVVYRRALNEDLIRGRSIEGVSTSCLYVACRQESIPRSLEEV 199
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ + E+G Y + Q L + +K VDP ++ +F L +++V AR
Sbjct: 200 ADVSRVEKKEIGRTYRYIAQELSLE-----MKPVDPKEYVPRFCSAL--DSSEEVQAKAR 252
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 253 EIIDTTAEEGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 310
>gi|390961741|ref|YP_006425575.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390520049|gb|AFL95781.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 299
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 5/162 (3%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y +CR P L + ++ ++ E+G +
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIADISRVDKKEIGRSFRF 192
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 139
+ + L + + +K P+ +++KF D L G +++V A IL +T+G+ P
Sbjct: 193 IARNLNLTPKKLFVK---PTDYVNKFADEL--GLSERVRRRAIAILEEAYEKGLTSGKSP 247
Query: 140 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+GL AALY++ L K ++ ++ ++ + E T+ R E
Sbjct: 248 AGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|1729909|sp|P50387.1|TF2B_SULSH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|836952|gb|AAA81380.1| transcription factor TFIIB homolog [Sulfolobus shibatae]
Length = 309
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 9/181 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++ N LN+ +S + A Y AV + +GR E V A+ +Y ACR+ L
Sbjct: 127 LERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLD 184
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ + Y N E+ Y L + L ++ + DP ++ + + L G + +V T
Sbjct: 185 EIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDYVTRIANLL--GLSGRVMKT 237
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T+ R E
Sbjct: 238 AAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRYKE 297
Query: 181 F 181
Sbjct: 298 L 298
>gi|375083122|ref|ZP_09730154.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
gi|374742208|gb|EHR78614.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
Length = 299
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 5/162 (3%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +G+ E V A+C+Y ACR P L + ++ ++ E+G +
Sbjct: 133 AARLYREAVRKGLIRGKSIESVIAACVYAACRLLKIPRTLDEIADIAKVDKKEIGRSFRF 192
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 139
+ + L + + +K P+ +++KF D L G +++ A ++L +T+G+ P
Sbjct: 193 IARNLNLTPKKLFVK---PTDYVNKFADEL--GLSERTRRRAIELLEKAYGMGLTSGKSP 247
Query: 140 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+GL AALY++ L G K ++ ++ ++ + E T+ R E
Sbjct: 248 AGLVAAALYIAGLLEGEKRTQREVAEVARVTEVTVRNRYKEM 289
>gi|355693620|gb|EHH28223.1| hypothetical protein EGK_18611 [Macaca mulatta]
gi|355778900|gb|EHH63936.1| hypothetical protein EGM_17014 [Macaca fascicularis]
Length = 59
Score = 71.2 bits (173), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KR
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKR 59
>gi|341583086|ref|YP_004763578.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810744|gb|AEK73901.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 299
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 5/162 (3%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y +CR P L + ++ ++ E+G +
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIADISRVDKKEIGRSFRF 192
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 139
+ + L + + +K P+ +++KF D L G +++V A IL +T+G+ P
Sbjct: 193 IARNLNLTPKKLFVK---PTDYVNKFADEL--GMSERVRRRAIAILEEAYDRGLTSGKSP 247
Query: 140 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+GL AALY++ L K ++ ++ ++ + E T+ R E
Sbjct: 248 AGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|384433900|ref|YP_005643258.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
gi|261602054|gb|ACX91657.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
Length = 306
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 9/181 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++ N LN+ +S + A Y AV + +GR E V A+ +Y ACR+ L
Sbjct: 124 LERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLD 181
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ + Y N E+ Y L + L ++ + DP ++ + + L G + V T
Sbjct: 182 EIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDYVTRIANLL--GLSGAVMKT 234
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T+ R E
Sbjct: 235 AAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRYKE 294
Query: 181 F 181
Sbjct: 295 L 295
>gi|170583367|ref|XP_001896547.1| Transcription factor TFIIB repeat family protein [Brugia malayi]
gi|158596222|gb|EDP34611.1| Transcription factor TFIIB repeat family protein [Brugia malayi]
Length = 769
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
V+ A F+ + V+RNFT+GR V A+CLY+ CR ++ LL+DFS+ +NV++LG
Sbjct: 104 VNTAFNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLENTAHLLLDFSDITQVNVFDLGRT 163
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 116
L + L I L DP +++ +F L G +K
Sbjct: 164 LNFLTRSLKIN-----LPTTDPCMYILRFAVSLDFGAKQK 198
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 29/135 (21%)
Query: 335 SDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 394
S+G + IDD E++ Y+ +EE K W ++N E+L+E + +
Sbjct: 330 SNGELDLEGIDDDEINTYILTKEEVDLKTRFWMKLNGEHLKEMERRRREREEEER----- 384
Query: 395 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGP--AQTALEATRRMLTKKR 452
K K+++R + P A TA EA +++ +K+
Sbjct: 385 ----------------------EKDNSSKKRRRTNGIRKKEPIVAATAQEAMEKVIHEKK 422
Query: 453 LSSKINYDVLEKLFD 467
LS+KINYD+L+++ D
Sbjct: 423 LSNKINYDILKEIED 437
>gi|227827925|ref|YP_002829705.1| transcription initiation factor IIB [Sulfolobus islandicus M.14.25]
gi|227830647|ref|YP_002832427.1| transcription initiation factor IIB [Sulfolobus islandicus
L.S.2.15]
gi|229579555|ref|YP_002837954.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.G.57.14]
gi|229585192|ref|YP_002843694.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.27]
gi|238620152|ref|YP_002914978.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.4]
gi|284998175|ref|YP_003419942.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|385773629|ref|YP_005646195.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
gi|385776265|ref|YP_005648833.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|227457095|gb|ACP35782.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
L.S.2.15]
gi|227459721|gb|ACP38407.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.14.25]
gi|228010270|gb|ACP46032.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.G.57.14]
gi|228020242|gb|ACP55649.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.27]
gi|238381222|gb|ACR42310.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.4]
gi|284446070|gb|ADB87572.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|323475013|gb|ADX85619.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|323477743|gb|ADX82981.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
Length = 309
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 9/181 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++ N LN+ +S + A Y AV + +GR E V A+ +Y ACR+ L
Sbjct: 127 LERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLD 184
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ + Y N E+ Y L + L ++ + DP ++ + + L G + V T
Sbjct: 185 EIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDYVTRIANLL--GLSGAVMKT 237
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T+ R E
Sbjct: 238 AAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRYKE 297
Query: 181 F 181
Sbjct: 298 L 298
>gi|15897377|ref|NP_341982.1| transcription initiation factor IIB [Sulfolobus solfataricus P2]
gi|284173282|ref|ZP_06387251.1| transcription initiation factor IIB [Sulfolobus solfataricus 98/2]
gi|14195237|sp|P58111.1|TF2B1_SULSO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|13813602|gb|AAK40772.1| Transcription initiation factor IIB (TFIIB) homolog (TFB-1)
[Sulfolobus solfataricus P2]
Length = 309
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 9/181 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++ N LN+ +S + A Y AV + +GR E V A+ +Y ACR+ L
Sbjct: 127 LERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLD 184
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ + Y N E+ Y L + L ++ + DP ++ + + L G + V T
Sbjct: 185 EIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDYVTRIANLL--GLSGAVMKT 237
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T+ R E
Sbjct: 238 AAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRYKE 297
Query: 181 F 181
Sbjct: 298 L 298
>gi|296242903|ref|YP_003650390.1| transcription initiation factor IIB [Thermosphaera aggregans DSM
11486]
gi|296095487|gb|ADG91438.1| Transcription initiation factor IIB (TFIIB) [Thermosphaera
aggregans DSM 11486]
Length = 306
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 9/163 (5%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+ +Y+ACR+ P L + S + I ++ Y
Sbjct: 141 AARIYREAVEKGLVRGRSIESVIAAAVYVACRELKVPRSLDEVSRHTRIGRKDIARCYRL 200
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRK 138
L + L I + DP ++ + L LPG V A ++L + +T G+
Sbjct: 201 LLRELDIK-----VGTTDPVDYVPRIVHALGLPG---TVVKKAVELLNVAREHGVTGGKD 252
Query: 139 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
P+GL AA+YV++L G K ++ ++ + + E T+ R E
Sbjct: 253 PAGLAAAAVYVASLELGEKRTQKEVAHVAGVTEVTVRNRYKEL 295
>gi|333986561|ref|YP_004519168.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
gi|333824705|gb|AEG17367.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
Length = 340
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 8/184 (4%)
Query: 5 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 64
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 161 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 220
Query: 65 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 124
+ E+G Y L + L I L P ++ +F L G + +V A DI
Sbjct: 221 VSRVTKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEVQSKAIDI 273
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 183
+ +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E E
Sbjct: 274 IEQAMAKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQ 333
Query: 184 TDSG 187
D G
Sbjct: 334 LDMG 337
>gi|68164349|gb|AAY87166.1| hypothetical transcription initiation factor IIB-like protein
variant #2 [Sulfolobus islandicus]
Length = 187
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 13/183 (7%)
Query: 1 MRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFL 58
+ ++ N LN+ +S DE A Y AV + +GR E V A+ +Y ACR+
Sbjct: 7 LERIGNLLNLPKSVKDE----AALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLART 62
Query: 59 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC 118
L + + Y N E+ Y L + L ++ + DP ++ + + L G + V
Sbjct: 63 LDEIAQYTKANRKEVAXCYRLLLRELDVSVPVS-----DPKDYVTRIAN--LLGLSGAVM 115
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
TA +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T+ R
Sbjct: 116 KTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRY 175
Query: 179 IEF 181
E
Sbjct: 176 KEL 178
>gi|229581781|ref|YP_002840180.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.N.15.51]
gi|228012497|gb|ACP48258.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.N.15.51]
Length = 309
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 9/181 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++ N LN+ +S + A Y AV + +GR E V A+ +Y ACR+ L
Sbjct: 127 LERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLD 184
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ + Y N E+ Y L + L ++ + DP ++ + + L G + V T
Sbjct: 185 EIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDYVTRIANLL--GLSGAVMKT 237
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T+ R E
Sbjct: 238 AAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRYKE 297
Query: 181 F 181
Sbjct: 298 V 298
>gi|118431874|ref|NP_148613.2| transcription initiation factor IIB [Aeropyrum pernix K1]
gi|152031706|sp|Q9Y942.2|TF2B_AERPE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|116063196|dbj|BAA81458.2| transcription initiation factor IIB [Aeropyrum pernix K1]
Length = 322
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 2/175 (1%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A +G + +V A + Y A+ + T+GR E + A+ LY A R P L D +
Sbjct: 131 ASRMGMPEIVVEDASKIYREAMEKGLTRGRSIESIVAASLYAASRIHGLPHSLTDIIKAM 190
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 126
NV + L + D + + P F++ L G + V A I+
Sbjct: 191 KGNVDAETRRDVARSYRLLVRDLNIKIPVRKPENFVYTIISAL--GLPEHVAIEAIKIID 248
Query: 127 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
++ +T G+ P GL GAA+Y++AL HG++ ++ +I +V + E T+ R E
Sbjct: 249 LSRKKGLTAGKDPGGLAGAAVYLAALKHGIRKTQKEIAHVVGVTEVTIRNRYKEI 303
>gi|161528132|ref|YP_001581958.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339433|gb|ABX12520.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 302
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
++K+ L +G D ++ A Y A+ + +GR + AS LY ACR P L D
Sbjct: 127 RLKDKLAVG--DAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDI 184
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
NI ++ Y L + L + + VDP + + + G ++K A
Sbjct: 185 GQASNIKRKDIARCYRLLLRELNLK-----MPVVDPIKCISRIASK--AGLSEKTKRKAT 237
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
IL + + + I+ G+ P GL AALYV+ +T+G ++ D+ + + E T+ R
Sbjct: 238 KILQTAEENKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNR 292
>gi|407464509|ref|YP_006775391.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047697|gb|AFS82449.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 302
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 9/175 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
++K+ L +G D ++ A Y A+ + +GR + AS LY ACR P L D
Sbjct: 127 RLKDKLAVG--DSVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDI 184
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
NI ++ Y L + L + + VDP + + + G ++K A
Sbjct: 185 GQASNIKRKDIARCYRLLLRELNLK-----MPVVDPVKCISRIASK--AGLSEKTKRKAT 237
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
IL + + I+ G+ P GL AALYV+ +T+G ++ D+ + + E T+ R
Sbjct: 238 KILQTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNR 292
>gi|393796884|ref|ZP_10380248.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 302
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 9/175 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
++K+ L +G D ++ A Y A+ + +GR + AS LY ACR P L D
Sbjct: 127 RLKDKLAVG--DAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDI 184
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
NI ++ Y L + L + + VDP + + + G ++K A
Sbjct: 185 GQASNIKRKDIARCYRLLLRELNLK-----MPVVDPVKCISRIASK--AGLSEKTKRAAT 237
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
IL + + I+ G+ P GL AALYV+ +T+G ++ D+ + + E T+ R
Sbjct: 238 KILQTAEEQKISAGKDPMGLAAAALYVACVTNGESKTQRDVAEAAGVTEVTIRNR 292
>gi|340344517|ref|ZP_08667649.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519658|gb|EGP93381.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 302
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
++K+ L +G D ++ A Y A+ + +GR + AS LY ACR P L D
Sbjct: 127 RLKDKLAVG--DAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDI 184
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ NI ++ Y L + L + + VDP + + + G ++K A
Sbjct: 185 GHASNIKRKDIARCYRLLLRELNLK-----MPVVDPVKCISRIASK--AGLSEKTKRAAT 237
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
IL + + I+ G+ P GL AALYV+ +T+G ++ D+ + + E T+ R
Sbjct: 238 KILQTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNR 292
>gi|407462158|ref|YP_006773475.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045780|gb|AFS80533.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 302
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
++K+ L +G D ++ A Y A+ + +GR + AS LY ACR P L D
Sbjct: 127 RLKDKLAVG--DAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDI 184
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
NI ++ Y L + L + + VDP + + + G ++K A
Sbjct: 185 GQASNIKRKDIARCYRLLLRELNLK-----MPVVDPIKCISRIASK--AGLSEKTKRKAT 237
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
IL + + + I+ G+ P GL AALYV+ +T+G ++ D+ + + E T+ R
Sbjct: 238 KILQTAEENKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNR 292
>gi|68164351|gb|AAY87167.1| hypothetical transcription initiation factor IIB-like protein
variant #3 [Sulfolobus islandicus]
gi|68164353|gb|AAY87168.1| hypothetical transcription initiation factor IIB-like protein
variant #1 [Sulfolobus islandicus]
Length = 187
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 13/183 (7%)
Query: 1 MRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFL 58
+ ++ N LN+ +S DE A Y AV + +GR E V A+ +Y ACR+
Sbjct: 7 LERIGNLLNLPKSVKDE----AALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLART 62
Query: 59 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC 118
L + + Y N E+ Y L + L ++ + DP ++ + + L G + V
Sbjct: 63 LDEIAQYTKANRKEVARCYRLLLRELDVSVPVS-----DPKDYVTRIAN--LLGLSGAVM 115
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
TA +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T+ R
Sbjct: 116 KTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRY 175
Query: 179 IEF 181
E
Sbjct: 176 KEL 178
>gi|386875527|ref|ZP_10117689.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806627|gb|EIJ66084.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 302
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 9/175 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
++K+ L +G D ++ A Y A+ + +GR + AS LY ACR P L D
Sbjct: 127 RLKDKLAVG--DSVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDI 184
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
NI ++ Y L + L + + VDP + + + G ++K A
Sbjct: 185 GQASNIKRKDIARCYRLLLRELNLK-----MPVVDPVKCISRIASK--AGLSEKTKRKAT 237
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
IL + + I+ G+ P GL AALYV+ +T+G ++ D+ + + E T+ R
Sbjct: 238 KILQTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNR 292
>gi|242018725|ref|XP_002429824.1| transcription initiation factor IIB, putative [Pediculus humanus
corporis]
gi|212514842|gb|EEB17086.1| transcription initiation factor IIB, putative [Pediculus humanus
corporis]
Length = 184
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN-INVYELGA 75
+ +A F+ +A++R+ T+GR+T V A+C+Y+ CR + +LIDF + L+ + VYELG
Sbjct: 107 IEIAYNFFKMALSRHLTRGRKTGNVVAACVYMTCRMEGTAHMLIDFCDVLDTVGVYELGR 166
Query: 76 VYLQLCQVLYI 86
YL+L Q L I
Sbjct: 167 TYLKLSQALCI 177
>gi|307595018|ref|YP_003901335.1| Zinc finger TFIIB-type domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550219|gb|ADN50284.1| Zinc finger TFIIB-type domain protein [Vulcanisaeta distributa DSM
14429]
Length = 336
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y + + +GR E + A+CL++ACR+ P L + S Y + E+ +
Sbjct: 174 IYEQVLTKGLVRGRSVEAIVAACLHMACRKIGMPRSLDEISQYTRASRKEVARCFR---- 229
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSG 141
IA E V L DP +++ + ++L G ++ A +IL KR +T G+ P+G
Sbjct: 230 --LIARELGVRLPLSDPKLYVPRIVEQLKLSG--EILKEALNILEQAKRKGLTAGKDPAG 285
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
L AA+Y+++L G ++ ++ + E T+ R E
Sbjct: 286 LAAAAVYIASLLKGEVRTQKEVAMAAQVTEVTVRNRYKEL 325
>gi|325969253|ref|YP_004245445.1| transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
gi|323708456|gb|ADY01943.1| Transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
Length = 336
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y + + +GR E + A+CL++ACR+ P L + S Y + E+ +
Sbjct: 174 VYEQVLTKGLVRGRSVEAIVAACLHMACRKIGMPRSLDEISQYTRASRKEVARCFR---- 229
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSG 141
IA E V L DP +++ + ++L G ++ A +IL KR +T G+ P+G
Sbjct: 230 --LIARELGVRLPLSDPKLYVPRIVEQLKLSG--EILKEALNILEQAKRKGLTAGKDPAG 285
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
L AA+Y+++L G ++ ++ + E T+ R E
Sbjct: 286 LAAAAVYIASLLRGEVRTQKEVAMAAQVTEVTVRNRYKEL 325
>gi|429966286|gb|ELA48283.1| hypothetical protein VCUG_00324, partial [Vavraia culicis
'floridensis']
Length = 165
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 3 QMKNAL-NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 61
Q+KN ++G SDE+ A R+Y +++ N T+GR ++C+Y+ CRQ+ P LLID
Sbjct: 81 QIKNICASLGLSDEVAQSAHRWYKLSLQGNLTRGRNILYTLSACIYIVCRQEKTPHLLID 140
Query: 62 FSNYLNINVYELGAVYLQL 80
F++ L+++V+++G +++++
Sbjct: 141 FAHLLDLDVFKIGNIFVRI 159
>gi|379335167|gb|AFD03156.1| transcription factor TFIIB cyclin-related protein [uncultured
bacterium W5-77b]
Length = 303
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 9/175 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
++K+ L +G D ++ A Y A+ + +GR + AS LY ACR P L D
Sbjct: 128 RLKDKLAVG--DTVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDI 185
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+N NI ++ Y L + L + + V+P + + + G ++K A
Sbjct: 186 ANASNIKRKDIARCYRLLLRELGLK-----MPVVNPVNCISRIAS--IAGLSEKTKREAS 238
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
IL + + I+ G+ P GL AALYV+ +T+G ++ D+ + + E T+ R
Sbjct: 239 KILKNAEEVKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNR 293
>gi|16081986|ref|NP_394398.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195243|sp|Q9HJM7.1|TF2B1_THEAC RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|10640255|emb|CAC12069.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 312
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 93/189 (49%), Gaps = 15/189 (7%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A N+ D++ A Y AV +N +GR E V A LY ACR + P L + ++
Sbjct: 135 ASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASVT 194
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTDRLLPGGNKKVCDTARD 123
+ E+G Y + + L + N++ PS ++ +F +L + + + A +
Sbjct: 195 RVKKKEIGRTYRIMSRYLKL----NIM----PSKAEDYISRFCSKLKLSMDTR--NKALE 244
Query: 124 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 183
IL S + +T+G+ P+G+ AA+Y+++L G + ++ + ++ + E T+ R E
Sbjct: 245 ILRSAENAGLTSGKGPTGVAAAAIYIASLMTGERRTQRAVAEVAGVTEVTIRNRYKEL-- 302
Query: 184 TDSGSLTIE 192
T+ L +E
Sbjct: 303 TEKLQLNVE 311
>gi|288559971|ref|YP_003423457.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
gi|288542681|gb|ADC46565.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
Length = 264
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 8/184 (4%)
Query: 5 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 64
+++ +G + A Y AV +GR E V A+ LY ACRQ P L + +
Sbjct: 85 RDSSRLGLPRSVREAASVIYRSAVENKLIRGRSIEGVVAASLYAACRQCKVPRTLDEIAE 144
Query: 65 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 124
++ E+G Y L + L+I L P ++ +F L G + +V + +I
Sbjct: 145 VSRVSKKEVGRTYRFLTRELHIK-----LPPTSPVDYVPRFASEL--GLSGEVQSRSIEI 197
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 183
+ +T+GR P+G+ AALY++++ G + ++ D+ + + E T+ R E E
Sbjct: 198 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADVAGVTEVTIRNRYKELTEQ 257
Query: 184 TDSG 187
++G
Sbjct: 258 LETG 261
>gi|257076875|ref|ZP_05571236.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 311
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 93/187 (49%), Gaps = 9/187 (4%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A N+ +++ + Y AV +N +GR E V A +Y ACR + P L + ++
Sbjct: 134 ASNLSIPNDVRETSAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITNVPRTLDEIASVT 193
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 126
+ E+G Y + + L + N+L P ++++F +L + A +IL
Sbjct: 194 RVKKKEIGRTYRIMARYLKL----NILPS-KPDDYVNRFCSKLRLSMEAR--KRAEEILK 246
Query: 127 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDS 186
+ +T+G+ P+G+ AA+Y+++L G + ++ I ++ + E T+ R E T+
Sbjct: 247 MAIDNDLTSGKGPTGVAAAAIYIASLITGERRTQRAIAEVAGVTEVTIRNRYKEL--TEK 304
Query: 187 GSLTIED 193
+LTIE+
Sbjct: 305 LNLTIEE 311
>gi|48478410|ref|YP_024116.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431058|gb|AAT43923.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 310
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 92/185 (49%), Gaps = 9/185 (4%)
Query: 9 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 68
N+ +++ A Y AV +N +GR E V A +Y ACR + P L + ++ +
Sbjct: 135 NLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITNVPRTLDEIASVTRV 194
Query: 69 NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 128
E+G Y + + L + N++ P ++++F +L + A +IL
Sbjct: 195 KKKEIGRTYRIMARYLKL----NIMPS-KPEDYVNRFCSKLRLSMEAR--KRAEEILKMA 247
Query: 129 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGS 188
+ +T+G+ P+G+ AA+Y+++L G + ++ I ++ + E T+ R E T+ +
Sbjct: 248 VDNDLTSGKGPTGVAAAAIYIASLITGERRTQRAIAEVAGVTEVTIRNRYKEL--TEKLN 305
Query: 189 LTIED 193
LTIE+
Sbjct: 306 LTIEE 310
>gi|16120252|ref|NP_395840.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169237618|ref|YP_001690821.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195241|sp|Q9HHK5.1|TF2B3_HALSA RecName: Full=Transcription initiation factor IIB 3; Short=TFIIB 3
gi|10584386|gb|AAG20975.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167728395|emb|CAP15204.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 317
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V +CLY ACRQ+ P L +
Sbjct: 140 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEGIPRTLEEV 197
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ I+ E+G Y + Q L + ++ DP +L +F L +++V AR
Sbjct: 198 TEVARIDQKEIGRTYRYVAQELSLE-----IQPTDPKEYLPRFASDLEL--SEEVIAKAR 250
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ PSG AA+Y ++L K ++ ++ + ++ E T+ R E
Sbjct: 251 EIIDTSAEQGLLSGKSPSGFAAAAIYAASLLCNEKKTQREVANVANVTEVTIRNRYQE 308
>gi|167043157|gb|ABZ07866.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_ANIW141J13]
Length = 305
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 17/181 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++K+ L++ SD +V A Y A+ + KGR + AS LY ACR+ P L
Sbjct: 128 LYRLKDKLSL--SDSVVEKAAYIYRKAINKKLVKGRTISSLMASALYAACREVGTPRTLK 185
Query: 61 DFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 116
D S+ NI +L + Y L L + D + + ++ I + + T RL
Sbjct: 186 DISDTTNIKKRDLASNYRLLVNELDLKIPVVDSVHNVARIASKIGISEKTKRL------- 238
Query: 117 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 176
A ++L + +T G+ P L ALY+S G +S+ D+ + + E T+
Sbjct: 239 ----ATELLRKAEESELTAGKNPMSLAATALYISCRKTGENYSQRDLAEAASVTEVTIRN 294
Query: 177 R 177
R
Sbjct: 295 R 295
>gi|325960055|ref|YP_004291521.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325331487|gb|ADZ10549.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 331
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 8/184 (4%)
Query: 5 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 64
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 152 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 211
Query: 65 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 124
++ E+G Y L + L I L P ++ +F L G +V A +I
Sbjct: 212 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASELNLSG--EVQSKAIEI 264
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 183
+ +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E E
Sbjct: 265 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQ 324
Query: 184 TDSG 187
D G
Sbjct: 325 LDMG 328
>gi|385805988|ref|YP_005842386.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
gi|383795851|gb|AFH42934.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
Length = 316
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 7/161 (4%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ +Y+ACR K P L + S + N E+ Y L +
Sbjct: 153 IYRKAVEKGLVRGRSIESVIAASVYVACRLKKLPRTLDEISLHTRANRKEIARCYRLLVK 212
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 142
L + + DP ++ + L G K + A I+ K+ +T G+ P+GL
Sbjct: 213 ELQLK-----VPIADPIDYIPRMGSLLDLSG--KAMNIAARIVKIAKQKALTAGKDPAGL 265
Query: 143 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 183
AA+YV+ L K ++ +I I + E T+ R E N
Sbjct: 266 AAAAIYVATLLENEKRTQKEIANIAGVTEVTVRNRYKELVN 306
>gi|410720379|ref|ZP_11359735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
gi|410601161|gb|EKQ55681.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
Length = 340
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 8/184 (4%)
Query: 5 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 64
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 161 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 220
Query: 65 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 124
++ E+G Y L + L I L P ++ +F L G +V A +I
Sbjct: 221 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASELNLSG--EVQSKAIEI 273
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 183
+ +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E E
Sbjct: 274 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQ 333
Query: 184 TDSG 187
D G
Sbjct: 334 LDMG 337
>gi|357622230|gb|EHJ73794.1| TFIIB-related factor [Danaus plexippus]
Length = 195
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
+ + + +A F+ +A+AR+ T GR++ QA+C+Y+ CR + P LLID S+ L I+ Y+
Sbjct: 103 NQQCIDIACNFFKMALARHLTIGRQSALTQAACVYITCRTEGTPHLLIDISDALQIDCYQ 162
Query: 73 LGAVYLQLCQVLYI 86
LG Y +L + L I
Sbjct: 163 LGRTYFKLSKALCI 176
>gi|325959508|ref|YP_004290974.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325330940|gb|ADZ10002.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 325
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 7/187 (3%)
Query: 5 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 64
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 146 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAE 205
Query: 65 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 124
+ E+G Y L + L I L P ++ +F L G +V A +I
Sbjct: 206 VSRVGKKEVGRTYRFLTRELNIK-----LPPTSPVDYIPRFASELNLSG--EVQSKAIEI 258
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184
+ + +T+G+ P+G+ AALY++++ G + ++ D+ ++ + E T+ R E
Sbjct: 259 INNAMAKGLTSGKGPTGVAAAALYIASVLLGERKTQRDVAEVAGVTEVTIRNRYKELSEE 318
Query: 185 DSGSLTI 191
LTI
Sbjct: 319 IEMGLTI 325
>gi|170043428|ref|XP_001849389.1| transcription factor IIIB 90 kDa subunit [Culex quinquefasciatus]
gi|167866785|gb|EDS30168.1| transcription factor IIIB 90 kDa subunit [Culex quinquefasciatus]
Length = 218
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ +A+ R+ T+GRR + A+C+Y+ CR + LLID S+ L I YELG YL+L Q
Sbjct: 113 FFKMALIRHLTRGRRNTHIYAACVYITCRTEGTSHLLIDISDVLQICCYELGRTYLKLSQ 172
Query: 83 VLYI 86
L I
Sbjct: 173 ALCI 176
>gi|162287069|ref|NP_001088063.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Xenopus laevis]
gi|52354750|gb|AAH82860.1| LOC494758 protein [Xenopus laevis]
Length = 660
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 63/132 (47%), Gaps = 27/132 (20%)
Query: 334 ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 393
A DG + + IDD E+D Y+ NE+E K ++W + N +YL EQ KE A K
Sbjct: 434 AGDGELDLNGIDDNEIDRYILNEKEAEIKTVLWMKENADYLREQKEKEERIAKEKEL--- 490
Query: 394 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 453
G+ Q R K KR A + A TA EA +ML +K++
Sbjct: 491 -------GIYKEQ-------------RPRKPSKRRAPIQ----ASTAGEAIEKMLEQKKI 526
Query: 454 SSKINYDVLEKL 465
SSKINYDVL L
Sbjct: 527 SSKINYDVLRDL 538
>gi|15678905|ref|NP_276022.1| transcription initiation factor IIB [Methanothermobacter
thermautotrophicus str. Delta H]
gi|14195233|sp|O26971.1|TF2B_METTH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2621979|gb|AAB85383.1| transcription initiation factor TFIIB [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 310
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 8/184 (4%)
Query: 5 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 64
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAE 190
Query: 65 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 124
++ E+G Y L + L I L P ++ +F L G + +V A +I
Sbjct: 191 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEVQSKAIEI 243
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 183
+ + +T+GR P+G+ AALY++++ G ++ D+ ++ + E T+ R E E
Sbjct: 244 IEMAMENGLTSGRGPTGVAAAALYIASVLLGEHKTQRDVAEVAGVTEVTIRNRYKELTEQ 303
Query: 184 TDSG 187
D G
Sbjct: 304 LDLG 307
>gi|167044706|gb|ABZ09376.1| putative transcription factor TFIIB repeat protein [uncultured
marine microorganism HF4000_APKG7N23]
Length = 242
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 19/190 (10%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R + ALN IG ++ A Y AV N +GR E V A+ LY ACR+
Sbjct: 52 RNLAQALNELNRLASKIGLHRQVREEAAMLYRRAVQDNLVRGRSVEGVAAAALYGACRRC 111
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LP 111
P L + + + E+G Y YI+ E + L+ P++++ +F L LP
Sbjct: 112 EVPRTLSEITEASRASKKEVGRTY------RYISRELKLNLQPASPAVYIIRFCRELELP 165
Query: 112 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 171
G V A +IL +T+GR P+G+ AA+Y++++ + + ++ I V + E
Sbjct: 166 G---YVESAAINILNQAIEAELTSGRGPTGVAAAAIYIASVVYDQRKTQKTIADTVGVTE 222
Query: 172 ATLMKRLIEF 181
T+ R E
Sbjct: 223 VTIRNRYKEL 232
>gi|167045037|gb|ABZ09701.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8G15]
Length = 300
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 17/179 (9%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
++K+ L + SD +V A Y A+ + KGR + AS LY ACR+ P L D
Sbjct: 127 RLKDKLTL--SDSVVEKAAYIYRKAINKKLVKGRTISALMASALYAACREVGTPRTLKDI 184
Query: 63 SNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC 118
S+ NI +L A Y L L + + + + ++ I + + T R+
Sbjct: 185 SDTTNIKKRDLAANYRLLVNELDLKIPVVNSVHNVARIASKIGISEKTKRI--------- 235
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
A +IL + I+ G+ P L ALY+S G +S+ D+ + + E T+ R
Sbjct: 236 --ATEILRKAEESEISAGKNPMSLAATALYISCRKTGENYSQRDLAEAASVTEVTIRNR 292
>gi|14590724|ref|NP_142794.1| transcription initiation factor IIB [Pyrococcus horikoshii OT3]
gi|3257275|dbj|BAA29958.1| 208aa long hypothetical transcription initiation factor IIB
[Pyrococcus horikoshii OT3]
Length = 208
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 5/162 (3%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y + TKGR E V A+C+Y++CR P L + + + + VY
Sbjct: 44 AVRIYRKLIKSGVTKGRSIESVAAACIYISCRLYKVPRTLDEIAKVAKEDKKVIARVYRL 103
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 139
+ + L ++ + +++ P ++ KF D L +++V A +L K IT+G+ P
Sbjct: 104 VVKKLGLSSKDMLIR---PEYYIDKFADEL--EVSERVKRRALRLLNEAKDKGITSGKNP 158
Query: 140 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
GL + LY+++L G + ++ +I ++ I E T+ R E
Sbjct: 159 LGLAASILYIASLLEGERRTQKEIARVAGITEVTIRNRYKEL 200
>gi|159041370|ref|YP_001540622.1| transcription initiation factor IIB [Caldivirga maquilingensis
IC-167]
gi|189029851|sp|A8MCX6.1|TF2B_CALMQ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|157920205|gb|ABW01632.1| Transcription factor TFIIB cyclin-related [Caldivirga
maquilingensis IC-167]
Length = 336
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 9/160 (5%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y + KGR E + A+CL++ACR + P L + S Y E+ + + +
Sbjct: 174 VYKQVLKSGLVKGRSVEAIIAACLHMACRMQGMPRSLDEISQYTRAPRKEIARCFRLIAR 233
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 141
L I L DP ++ K ++L LPG + A +L K +T G+ P+G
Sbjct: 234 ELRIR-----LPLSDPRQYVPKIVEQLKLPGD---IAKEAIRVLEEAKDKGLTAGKDPAG 285
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
L AA+Y+++L G ++ +I + + E T+ R E
Sbjct: 286 LAAAAVYIASLLKGEVRTQKEIAQAAQVTEVTVRNRYKEL 325
>gi|289192865|ref|YP_003458806.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
gi|288939315|gb|ADC70070.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
Length = 334
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y
Sbjct: 173 IYRGAVDKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYR---- 228
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 140
++A E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 229 --FLARELNIKLTPTNPIDYVPRFASELGLPG---EVESKAIQILQQAAEKGLTSGRGPT 283
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
G+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 284 GVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKEL 324
>gi|84490148|ref|YP_448380.1| transcription initiation factor IIB [Methanosphaera stadtmanae DSM
3091]
gi|121731831|sp|Q2NEL6.1|TF2B_METST RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|84373467|gb|ABC57737.1| transcription initiation factor IIB (TFIIB) [Methanosphaera
stadtmanae DSM 3091]
Length = 311
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 8/184 (4%)
Query: 5 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 64
+++ +G + A Y AV +GR E V A+ LY ACR+ P L + ++
Sbjct: 132 RDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEIAD 191
Query: 65 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 124
++ E+G Y L + L+I L P ++ +F L G V A +I
Sbjct: 192 VSRVSKKEVGRTYRFLTRELHIR-----LPPTSPIDYVPRFASELNLSG--VVQSKAIEI 244
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 183
+ + +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E E
Sbjct: 245 INQAMDNGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQ 304
Query: 184 TDSG 187
D G
Sbjct: 305 LDMG 308
>gi|408382816|ref|ZP_11180358.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
gi|407814618|gb|EKF85243.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
Length = 307
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 8/184 (4%)
Query: 5 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 64
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 128 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 187
Query: 65 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 124
++ E+G Y L + L I L P ++ +F L G +V A +I
Sbjct: 188 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASELNLSG--EVQSKAIEI 240
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 183
+ +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E E
Sbjct: 241 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQ 300
Query: 184 TDSG 187
D G
Sbjct: 301 LDMG 304
>gi|327259002|ref|XP_003214327.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Anolis
carolinensis]
Length = 672
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 295 VQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 354
V+ P ES+ P E + T D DG + + IDD E+D Y+
Sbjct: 398 VRPPALESLLGPLPTAASLGITESIKECILTKDRDLNENTEDGELDLNGIDDTEIDMYIL 457
Query: 355 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 414
NE E K +W + N +YL+EQ KEA A K EL
Sbjct: 458 NESEAQIKAELWMKENADYLKEQKEKEARIAKEK------------------ELGIY--- 496
Query: 415 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
KE + K++A+ + A TA EA +ML +K++SSKINY+VL L
Sbjct: 497 ------KEHKPKKSAKKRELIQASTAGEAIEKMLEQKKISSKINYNVLRDL 541
>gi|449278527|gb|EMC86349.1| Transcription factor IIIB 90 kDa subunit, partial [Columba livia]
Length = 536
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 295 VQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 354
V+ P ES+ P E + T + DG + S IDD E+D Y+
Sbjct: 348 VRPPALESLLGPLPTAASLGITESIKECISTKDQEPDENTGDGELDLSGIDDSEIDRYIL 407
Query: 355 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 414
NE E K +W + N +YL+EQ KEA A K EL
Sbjct: 408 NETEAQIKAELWMKENADYLKEQKEKEARIAKEK------------------ELGIY--- 446
Query: 415 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
KE + K++A+ + A TA EA +ML +K++SSKINY+VL L
Sbjct: 447 ------KEHKPKKSAKKREPIQASTAGEAIEKMLEQKKISSKINYNVLRDL 491
>gi|393796305|ref|ZP_10379669.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 287
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 12/188 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++K+ L + SD +V A Y A+ + +GR + AS LY ACR P L
Sbjct: 108 LTRLKDKLAV--SDAVVEKAAYIYRKALDKGLVRGRSISALIASALYAACRDTETPRTLK 165
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
D S+ NI ++ Y L Q L + + VDP + + +L G ++K
Sbjct: 166 DVSDAGNIKKKDIARCYRILHQELELK-----MPVVDPIQCIARIASKL--GISEKTKRY 218
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR--- 177
A +L + + + G+ P GL AALY+S +++ ++ DI + + E T+ R
Sbjct: 219 AVKVLKTAQEHEESAGKDPMGLAAAALYLSCVSNSENMTQRDIAEAASVTEVTIRNRYKG 278
Query: 178 LIEFENTD 185
L +NTD
Sbjct: 279 LRMDQNTD 286
>gi|336254888|ref|YP_004597995.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338877|gb|AEH38116.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 323
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL I S + VA Y A++ + +GR E V CLY ACRQ+ P L +
Sbjct: 147 RMSSALGIPRS--VREVASVVYRRALSEDLIRGRSIEGVATGCLYAACRQEGIPRSLEEV 204
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + LK VDP ++ +F L +++V R
Sbjct: 205 AEVSRVERKEIGRTYRYVAQELSLE-----LKPVDPQEYVPRFCSEL--DLSEEVTAKTR 257
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+ R E
Sbjct: 258 EIIQVTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQE 315
>gi|389860462|ref|YP_006362701.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
gi|388525365|gb|AFK50563.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
Length = 316
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 7/162 (4%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y +AV + +GR E V A+ +Y+ACR+ P L + + Y I E+ Y
Sbjct: 150 AARIYRMAVEKGLVRGRSIESVIAAAVYVACREARVPRSLDEITKYTRIPRKEIARCYRL 209
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 139
L + L I + VDP F+ + L G + ++ A +IL ++ +T G+ P
Sbjct: 210 LLRELGIK-----VTAVDPIDFIPRIAHAL--GLSGEIIKNATEILNKVRNKGVTAGKDP 262
Query: 140 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+GL AA+Y++A+T G K ++ ++ + + E T+ R E
Sbjct: 263 AGLAAAAVYIAAITAGEKRTQKEVAHVAGVTEVTVRNRYKEI 304
>gi|329764659|ref|ZP_08256266.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329138857|gb|EGG43086.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 287
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 12/188 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++K+ L + SD +V A Y A+ + +GR + AS LY ACR P L
Sbjct: 108 LTRLKDKLAV--SDAVVEKAAYIYRKALDKGLVRGRSISALIASALYAACRDTETPRTLK 165
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
D S+ NI ++ Y L Q L + + VDP + + +L G ++K
Sbjct: 166 DVSDAGNIKKKDIARCYRILHQELELK-----MPVVDPIQCIARIASKL--GISEKTKRY 218
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR--- 177
A +L + + + G+ P GL AALY+S +++ ++ DI + + E T+ R
Sbjct: 219 AVKVLKTAQEHEESAGKDPMGLAAAALYLSCVSNSENMTQRDIAEAASVTEVTIRNRYKG 278
Query: 178 LIEFENTD 185
L +NTD
Sbjct: 279 LRMDQNTD 286
>gi|354611558|ref|ZP_09029514.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196378|gb|EHB61880.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 325
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 17/189 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G E+ A Y A++ + GR E V S LY A RQ
Sbjct: 137 RNLKQALGEIERMSSALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATSALYAAARQM 196
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 112
P + + +N I+ E Y + + L + + DP+ ++ +F L LP
Sbjct: 197 QTPRSIDEVANVSRIDAMEFKRTYRYIVRELGLE-----VAPADPASYVPRFASELDLP- 250
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+V AR++L + ++D +T+G+ P GL AA+Y ++L K ++S + + + E
Sbjct: 251 --DEVERRARELLDNAQKDGVTSGKSPVGLAAAAIYAASLLTNHKVTQSQVSDVTDVSEV 308
Query: 173 TLMKRLIEF 181
T+ R E
Sbjct: 309 TIRNRYQEL 317
>gi|336373760|gb|EGO02098.1| hypothetical protein SERLA73DRAFT_177837 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386576|gb|EGO27722.1| hypothetical protein SERLADRAFT_461642 [Serpula lacrymans var.
lacrymans S7.9]
Length = 347
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 9/165 (5%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
I +AK+ Y + +G+ E V A+C+++ACRQ P + N +++ LG
Sbjct: 149 ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTHVSKKTLGQ 208
Query: 76 VYLQLCQVLYI-----ADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMK 129
Y L Q + A +S P L ++ + L LP + +C DI+ +
Sbjct: 209 CYKALEQAFNLAPGASAHQSATAPSSGPENLLVRYCNHLDLPPNVQSICG---DIIVEAR 265
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
+ I GR P + G A+Y + L G S DI + + E T+
Sbjct: 266 KHGIADGRSPVSIAGGAIYFTCLLLGKPKSARDISAVAGVSEGTI 310
>gi|20094057|ref|NP_613904.1| transcription initiation factor IIB [Methanopyrus kandleri AV19]
gi|19887040|gb|AAM01834.1| Transcription initiation factor IIB [Methanopyrus kandleri AV19]
Length = 341
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 9 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 68
NI S IV A R Y AV ++ +GR E A+ L++AC+++ P + + + I
Sbjct: 127 NIPRS--IVDEAIRIYRKAVEKDLVRGRSIENTAAAALFMACKKRKHPRTIKEIAKLFGI 184
Query: 69 NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 128
++ + L + L + + DP +L +F L G ++ V AR+IL
Sbjct: 185 TPKDINRTHRVLLRHL-----NERMPAPDPKQYLSRFATEL--GVSEDVEMLAREILEKA 237
Query: 129 KRDWITTGRKPSGLCGAALYVSAL 152
++ +T R P+GL GAALY++ L
Sbjct: 238 EKKGLTVSRNPAGLAGAALYLAGL 261
>gi|355778899|gb|EHH63935.1| hypothetical protein EGM_17013, partial [Macaca fascicularis]
Length = 316
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 329 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 388
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 88 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 147
Query: 389 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 448
EL KE + K++ + + A TA EA +ML
Sbjct: 148 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 180
Query: 449 TKKRLSSKINYDVLEKL 465
+K++SSKINY VL L
Sbjct: 181 EQKKISSKINYSVLRGL 197
>gi|355693619|gb|EHH28222.1| hypothetical protein EGK_18610, partial [Macaca mulatta]
Length = 316
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 329 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 388
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 88 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 147
Query: 389 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 448
EL KE + K++ + + A TA EA +ML
Sbjct: 148 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 180
Query: 449 TKKRLSSKINYDVLEKL 465
+K++SSKINY VL L
Sbjct: 181 EQKKISSKINYSVLRGL 197
>gi|448733008|ref|ZP_21715254.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
gi|445803341|gb|EMA53638.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
Length = 325
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A++ + +GR E V S LY ACR++ P L +
Sbjct: 148 RMASALGVPRS--VREVASVIYRRALSDDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 205
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S +N E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 206 SEVSRVNRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELTL--SEEVQSKAN 258
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
DI+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 259 DIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 316
>gi|256810972|ref|YP_003128341.1| transcription initiation factor IIB [Methanocaldococcus fervens
AG86]
gi|256794172|gb|ACV24841.1| Transcription factor TFIIB cyclin-related [Methanocaldococcus
fervens AG86]
Length = 331
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 9/160 (5%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y L +
Sbjct: 170 IYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYRFLAR 229
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 141
L I L +P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 230 ELGIK-----LTPTNPIDYVPRFASELGLPG---EVESKAIQILQQAAEKGLTSGRGPTG 281
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 282 VAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKEL 321
>gi|292654896|ref|YP_003534793.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|291372806|gb|ADE05033.1| transcription initiation factor TFB [Haloferax volcanii DS2]
Length = 326
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 88/178 (49%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A++ + +GR E V S LY ACR++ P L +
Sbjct: 149 RMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 206
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F+ L +K+V A
Sbjct: 207 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL--DLSKEVQSKAN 259
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+ R E
Sbjct: 260 EIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQE 317
>gi|448728119|ref|ZP_21710451.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445797553|gb|EMA48024.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A++ + +GR E V S LY ACR++ P L +
Sbjct: 148 RMASALGVPRS--VREVASVIYRRALSDDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 205
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S +N E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 206 SEVSRVNRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELTL--SEEVQSKAN 258
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
DI+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 259 DIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 316
>gi|399578260|ref|ZP_10772009.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236752|gb|EJN57687.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 389
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 89/181 (49%), Gaps = 11/181 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
M +M +AL + +S VA Y A+ + +GR E V CLY ACRQ+ P L
Sbjct: 211 MDRMASALGVPKSTR--EVASVIYRRALNEDLIRGRSIEGVATGCLYAACRQEGIPRSLD 268
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCD 119
+ ++ + E+G Y Y+A E ++ ++ VDP ++ +F L G ++V
Sbjct: 269 EVADVSRVPYQEIGRTY------RYVAKELSLEMRPVDPKEYVPRFASEL--GVPEEVEQ 320
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A D++ + + + +G+ P+G AALY + L K ++ ++ + + E T+ R
Sbjct: 321 KANDVIDTAAEEGLLSGKSPTGFAAAALYAAGLLCNEKRTQKEVADVAQVTEVTIRNRYQ 380
Query: 180 E 180
E
Sbjct: 381 E 381
>gi|392587013|gb|EIW76348.1| transcription initiation factor IIB [Coniophora puteana RWD-64-598
SS2]
Length = 353
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 12/188 (6%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
I +AK+ Y + +G+ E V A+C+++ACRQ P + N N++ LG
Sbjct: 153 ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTNVSKKTLGQ 212
Query: 76 VYLQLCQVLYIADES-------NVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILAS 127
Y L Q + S + P L ++ + L LP + +C DI+ +
Sbjct: 213 CYKALEQAFNLTPGSGSGGASIHPSPSTGPENLLVRYCNHLDLPANVQSICG---DIIVA 269
Query: 128 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSG 187
++ I GR P + G A+Y + G S DI + + E T+ K + TD
Sbjct: 270 ARKHGIADGRSPVSIAGGAIYFTCHLLGKAKSARDISSVAGVSEGTI-KLVYRLYYTDRE 328
Query: 188 SLTIEDFM 195
L +D++
Sbjct: 329 KLVKQDWI 336
>gi|304315034|ref|YP_003850181.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
gi|302588493|gb|ADL58868.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
Length = 310
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 8/184 (4%)
Query: 5 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 64
+++ +G + A Y AV +GR E V A+ LY ACR + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRSCNVPRTLDEIAE 190
Query: 65 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 124
++ E+G Y L + L I L P ++ +F L G + +V A +I
Sbjct: 191 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEVQSKAIEI 243
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 183
+ + +T+GR P+G+ AALY++++ G ++ D+ ++ + E T+ R E E
Sbjct: 244 IEMAMENGLTSGRGPTGVAAAALYIASVLLGECKTQRDVAEVAGVTEVTIRNRYKELTEQ 303
Query: 184 TDSG 187
D G
Sbjct: 304 LDLG 307
>gi|257052965|ref|YP_003130798.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691728|gb|ACV12065.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 334
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E + + LY A RQ P L +F
Sbjct: 147 RMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQAGTPRSLDEF 204
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + Y L + L + + DP+ +L +FT L + + AR
Sbjct: 205 EPISRVRRQKYARAYRYLARQLELG-----IAPADPAEYLPRFTSDLDLDDDLER--QAR 257
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
D+L+ +K+ +G+ P+GL A+Y + L G + ++ ++ + + E T+ R E
Sbjct: 258 DLLSELKKTGEHSGKNPTGLAAGAIYAAGLLTGDRITQGEVAETADVSEVTIRDRYSEL 316
>gi|296109616|ref|YP_003616565.1| transcription factor TFIIB cyclin-related protein
[methanocaldococcus infernus ME]
gi|295434430|gb|ADG13601.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus infernus ME]
Length = 320
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 9/176 (5%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A +G + A Y AV + +GR E V A+ +Y ACR+ P L + +
Sbjct: 143 ASKLGLPKHVKEHASLLYREAVRKGLIRGRSIEGVVAATIYAACRKYRVPRTLDEIAEVS 202
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDIL 125
++ E+G Y L + L I L +P ++ +F L LPG +V A IL
Sbjct: 203 RVDKKEIGRTYRFLARELKIK-----LAPTNPIDYVPRFASELGLPG---EVESKAIQIL 254
Query: 126 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+T+GR P+G+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 255 KKAAEKGLTSGRGPTGVAAAAIYIASVLLGHRRTQREVAEVAGVTEVTIRNRYKEL 310
>gi|13541914|ref|NP_111602.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363020|sp|Q979Q3.1|TF2B1_THEVO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|14325345|dbj|BAB60249.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 312
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 92/189 (48%), Gaps = 15/189 (7%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A N+ +++ A Y AV +N +GR E V A LY ACR + P L + ++
Sbjct: 135 AFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASVT 194
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTDRLLPGGNKKVCDTARD 123
+ E+G Y + + L + N++ PS ++ +F +L + + + A +
Sbjct: 195 RVKKKEIGRTYRIMSRYLKL----NIM----PSKAEDYISRFCSKLKLSMDTR--NKALE 244
Query: 124 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 183
IL + +T+G+ P+G+ AA+Y+++L G + ++ + ++ + E T+ R E
Sbjct: 245 ILRDAENVGLTSGKGPTGVAAAAIYIASLITGERRTQRAVAEVAGVTEVTIRNRYKEL-- 302
Query: 184 TDSGSLTIE 192
T+ L +E
Sbjct: 303 TEKLKLNVE 311
>gi|322370876|ref|ZP_08045431.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320549553|gb|EFW91212.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 319
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+A + +GR E V S LY ACRQ+ P L +
Sbjct: 143 RMASALGVPRS--VREVASVIYRRALAEDLIRGRSIEGVATSTLYAACRQEGIPRSLEEV 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ ++ E+G Y + Q L + +K VDP ++ +F L G +++V A
Sbjct: 201 AEVSRVDQKEIGRTYRYISQELGLE-----MKPVDPKQYVPRFCSDL--GVSEEVQSKAN 253
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 254 EIIDTTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 311
>gi|357508869|ref|XP_003624723.1| hypothetical protein MTR_7g086760 [Medicago truncatula]
gi|355499738|gb|AES80941.1| hypothetical protein MTR_7g086760 [Medicago truncatula]
Length = 315
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 53/208 (25%)
Query: 172 ATLMKRLIEFENTDSGSLTIEDF--MARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDT 229
A + ++L+E + +S L +E+ MA++ E + A+ N P C+HKD+
Sbjct: 34 AAIREQLVELDLRES--LFVEELNTMAKEHEKNSEFKASTSKNLP-------CQCEHKDS 84
Query: 230 GKPF-ACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPF 288
+ GLC +C++ + A A++ E+E + A+A E FE
Sbjct: 85 KVSYCVLGLCETCFKHVLK--------ASNSAYKRQEKELL--AAALERDDFE------- 127
Query: 289 MSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFE 348
+ S++ + + D+T EA D S++FSDIDD E
Sbjct: 128 ------------------------SESSKDDDNDDSHRDDDSTAEAQDESESFSDIDDEE 163
Query: 349 VDGYLHNEEEKHYKKIIWEEMNREYLEE 376
VDGYL NEEE+HY++ WE +EY EE
Sbjct: 164 VDGYLLNEEERHYRQKTWENQYQEYYEE 191
>gi|409730080|ref|ZP_11271675.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|448723223|ref|ZP_21705747.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|445787965|gb|EMA38691.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
Length = 321
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y ++A + +GR E V S LY ACR++ P L +
Sbjct: 144 RMASALGVPRS--VREVASVIYRRSLAEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S +N E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 202 SEVSRVNRKEIGRTYRYVSQELALE-----MRPVDPKKYVPRFCSELTL--SEEVQSKAN 254
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
DI+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 255 DIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 312
>gi|148642484|ref|YP_001272997.1| transcription initiation factor IIB [Methanobrevibacter smithii
ATCC 35061]
gi|222446016|ref|ZP_03608531.1| hypothetical protein METSMIALI_01665 [Methanobrevibacter smithii
DSM 2375]
gi|261349445|ref|ZP_05974862.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
gi|189029858|sp|A5UKA1.1|TF2B_METS3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|148551501|gb|ABQ86629.1| transcription initiation factor TFIIB (zinc-binding)
[Methanobrevibacter smithii ATCC 35061]
gi|222435581|gb|EEE42746.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2375]
gi|288861808|gb|EFC94106.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
Length = 310
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 7/177 (3%)
Query: 5 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 64
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 190
Query: 65 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 124
+ E+G Y L + L I L P ++ +F L G + A +I
Sbjct: 191 VSRVTKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASELGLSGEAQ--SRAIEI 243
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E
Sbjct: 244 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKEL 300
>gi|260818777|ref|XP_002604559.1| hypothetical protein BRAFLDRAFT_79421 [Branchiostoma floridae]
gi|229289886|gb|EEN60570.1| hypothetical protein BRAFLDRAFT_79421 [Branchiostoma floridae]
Length = 1246
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 119/276 (43%), Gaps = 29/276 (10%)
Query: 116 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 175
+V TA +++ MKRDW+ GR+PSGLCGAAL VSA H ++ +I+K++ E L
Sbjct: 176 EVSMTALRLVSRMKRDWMHGGRQPSGLCGAALLVSARLHDFHRTQKEIIKVL---EEQLD 232
Query: 176 KRL------IEFENTDSGSLTIEDFMARKKEL--HEGVAANLPNNGPKVSGMNEVLCKHK 227
K + +E E E M + K L +G+ + P S M + +
Sbjct: 233 KEIEGELTSLEVEIEKELEREREKRMKKMKNLLAAKGITESDIRGTPAGSPMPPLEGQED 292
Query: 228 DTGKP-FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDS 286
T P C S ++ G +PP + +E++ + +E E E
Sbjct: 293 GTSSPGTPCSRVDS-----PSVVPGTSSSGNPPEQKHSEQQHSEQQLPQEQQLSEEEVMG 347
Query: 287 PFMSRVDKV-----QSPEPESIGVPKNC--TTQTASNEGEGDHTKTPGVDATTEASDGSD 339
+S + P PES+G+ + + AS + + + + G
Sbjct: 348 KILSPFAGIAPALGPEPTPESLGIKDSLDECLKVAS-----EKEEGTEDEDGEKEEGGEL 402
Query: 340 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLE 375
+ + I+D E+D +L N+EE K IW N +Y++
Sbjct: 403 DLTGINDEELDWFLLNDEEVRIKTEIWTLANADYIQ 438
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 86 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 144
+ + S + DP +++H+F +L G +V TA +++ MKRDW+ GR+PSGLCG
Sbjct: 4 VPENSGCVSAGDPCLYIHRFAHKLEFGERTHEVSMTALRLVSRMKRDWMHGGRRPSGLCG 63
Query: 145 AAL 147
A +
Sbjct: 64 AGV 66
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 422 EKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
+ Q +R + K A TA EA +ML +K++SSKINYDVL L
Sbjct: 1073 QGQLRRKPKKKQPIQASTAGEAIEKMLQEKKISSKINYDVLRDL 1116
>gi|344211069|ref|YP_004795389.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448667562|ref|ZP_21686062.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343782424|gb|AEM56401.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445770130|gb|EMA21198.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 319
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V +CLY ACRQ+ P L +
Sbjct: 143 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATACLYAACRQEGIPRSLEEV 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S+ + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 201 SDVSRVEQKEIGRTYRYVAQELELK-----MEPVDPKQYVPRFASELEL--SEEVQSKAN 253
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 254 EIIDTTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 311
>gi|448582204|ref|ZP_21645708.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448604362|ref|ZP_21657614.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448624090|ref|ZP_21670163.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445731852|gb|ELZ83435.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445744522|gb|ELZ95998.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445750057|gb|EMA01496.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 296
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 88/178 (49%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A++ + +GR E V S LY ACR++ P L +
Sbjct: 119 RMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 176
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F+ L +K+V A
Sbjct: 177 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL--DLSKEVQSKAN 229
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+ R E
Sbjct: 230 EIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQE 287
>gi|399578753|ref|ZP_10772498.1| Transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236212|gb|EJN57151.1| Transcription initiation factor IIB [Halogranum salarium B-1]
Length = 327
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 11/179 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY+ACRQ+ P L +
Sbjct: 143 RMASALGVPRS--VREVAAVIYRRALDTDLIRGRSIEGVATSALYIACRQEGIPRSLEEV 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
S+ ++ E+G Y YIA E + + VDP +L +F L ++ V A
Sbjct: 201 SSVARVDRREIGRTY------RYIAHELGLPMSPVDPKQYLPRFCSELEL--SEDVQQRA 252
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
I+ + + +G+ P+G AA+Y +AL K ++ DI K+ + E T+ R E
Sbjct: 253 TTIIERTTAEGLHSGKSPTGFAAAAIYTAALLCNEKRTQRDIAKVAQVTEVTIRNRYRE 311
>gi|448292886|ref|ZP_21483207.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448543300|ref|ZP_21624869.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448550186|ref|ZP_21628709.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448559542|ref|ZP_21633616.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448572791|ref|ZP_21640552.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448597013|ref|ZP_21654151.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445571861|gb|ELY26404.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445706844|gb|ELZ58717.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710932|gb|ELZ62727.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445711961|gb|ELZ63747.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445719563|gb|ELZ71242.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445740894|gb|ELZ92399.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 296
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 88/178 (49%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A++ + +GR E V S LY ACR++ P L +
Sbjct: 119 RMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 176
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F+ L +K+V A
Sbjct: 177 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL--DLSKEVQSKAN 229
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+ R E
Sbjct: 230 EIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQE 287
>gi|55376957|ref|YP_134807.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448634689|ref|ZP_21675087.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448640892|ref|ZP_21677679.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448651198|ref|ZP_21680267.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448678748|ref|ZP_21689755.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448689160|ref|ZP_21694897.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229682|gb|AAV45101.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445749662|gb|EMA01107.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445761417|gb|EMA12665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445770725|gb|EMA21783.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445772735|gb|EMA23780.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779030|gb|EMA29972.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 319
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V +CLY ACRQ+ P L +
Sbjct: 143 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATACLYAACRQEGIPRSLEEV 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S+ + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 201 SDVSRVEQKEIGRTYRYVAQELELK-----MEPVDPKQYVPRFASELEL--SEEVQSKAN 253
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 254 EIIDTTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 311
>gi|433593418|ref|YP_007296159.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448333396|ref|ZP_21522596.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307928|gb|AGB33739.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445622834|gb|ELY76276.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 320
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL I S + VA Y A+ + +GR E V +CLY ACR++ P L +
Sbjct: 144 RMASALGIPRS--VREVASVIYRRALDEDLIRGRSIEGVATACLYAACRREGIPRSLEEI 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ + E+G Y + Q L +A ++ VDP ++ +F L ++ V A
Sbjct: 202 ADVSRVERKEIGRTYRYIAQELSLA-----MEPVDPKEYVPRFCSEL--DSSETVQAKAT 254
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 255 EIIDTTAEQGLLSGKSPTGFAAAAIYAASLLCNEKRTQKEVAAVAQVTEVTIRNRYQE 312
>gi|389846162|ref|YP_006348401.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448616218|ref|ZP_21664928.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243468|gb|AFK18414.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445750873|gb|EMA02310.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 326
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 149 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 206
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F+ L +K+V A
Sbjct: 207 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL--DLSKEVQSKAN 259
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+ R E
Sbjct: 260 EIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQE 317
>gi|261402160|ref|YP_003246384.1| Transcription factor TFIIB cyclin-releated protein
[Methanocaldococcus vulcanius M7]
gi|261369153|gb|ACX71902.1| Transcription factor TFIIB cyclin-releated protein
[Methanocaldococcus vulcanius M7]
Length = 666
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y
Sbjct: 505 IYRNAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYR---- 560
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 140
++A E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 561 --FLARELNIKLTPTNPIDYVPRFASELGLPG---EVESKAIQILQQATEKGLTSGRGPT 615
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
G+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 616 GVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKEL 656
>gi|399577766|ref|ZP_10771518.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399237208|gb|EJN58140.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 338
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 9/180 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
M +M +AL G D + VA Y A+ + +GR E V S LY ACRQ+ P L
Sbjct: 161 MDRMASAL--GVPDSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLD 218
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ + + E+G Y + Q L + LK VDP F+ +F L +K+V
Sbjct: 219 EVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASELEL--SKEVQSK 271
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 272 ANEIIDVSAEKGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVASVAQVTEVTIRNRYQE 331
>gi|156938159|ref|YP_001435955.1| transcription initiation factor IIB [Ignicoccus hospitalis KIN4/I]
gi|189029852|sp|A8AC96.1|TF2B_IGNH4 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|156567143|gb|ABU82548.1| Transcription initiation factor IIB (TFIIB) [Ignicoccus hospitalis
KIN4/I]
Length = 316
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M N LN+ +I A Y AV + +GR E V A+ +Y ACR +P L +
Sbjct: 128 RMANLLNL--PKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLDEI 185
Query: 63 SNYLNINVYELGAVYLQLCQVLY----IADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC 118
+ L +N E+ Y + + L IAD + + ++ ++ L G+ +
Sbjct: 186 AKKLEVNRKEVARCYRLITKELKLKVPIADAMDHIPRIGEALKLR---------GD--II 234
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
+ A I+ +K IT G+ P+G+ A +Y++ + G + ++ +I + + E T+ R
Sbjct: 235 EYAMKIMEKIKGHPITAGKDPAGIAAAVIYIAVMQKGERRTQKEIANVAGVTEVTVRNRY 294
Query: 179 IEF 181
E
Sbjct: 295 KEI 297
>gi|345005737|ref|YP_004808590.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321363|gb|AEN06217.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 318
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACRQ+ P L +
Sbjct: 142 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEV 199
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + LK VDP F+ +F L G +++V A
Sbjct: 200 AEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASEL--GLSEEVQSKAT 252
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+ R E
Sbjct: 253 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQE 310
>gi|300713081|ref|YP_003738893.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|299126765|gb|ADJ17102.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 345
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 9/181 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R+M +AL G D I A Y AV + GR E + + LY A RQ S P L
Sbjct: 163 IRRMASAL--GLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQHSTPRTLA 220
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ + + Y L + L + ++ VDP ++ +F L + +
Sbjct: 221 ELETVSRVKRLRIQRAYRYLSRELGLR-----MEPVDPLQYVPQFASEL--NVSDEATRR 273
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
ARD+L + K + +GR P+GL A+Y + + ++ + + H+ T+ R E
Sbjct: 274 ARDLLTTAKAQGVHSGRSPAGLAAGAIYAATRLTNEQVTQETVRAVTHVSRMTIRIRYQE 333
Query: 181 F 181
Sbjct: 334 L 334
>gi|448294148|ref|ZP_21484234.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|445587483|gb|ELY41742.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 298
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 9/181 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R+M +AL G D I A Y AV + GR E + + LY A RQ S P L
Sbjct: 116 IRRMASAL--GLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQHSTPRTLA 173
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ + + Y L + L + ++ VDP ++ +F L + +
Sbjct: 174 ELETVSRVKRLRIQRAYRYLSRELGLR-----MEPVDPLQYVPQFASEL--NVSDEATRR 226
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
ARD+L + K + +GR P+GL A+Y + + ++ + + H+ T+ R E
Sbjct: 227 ARDLLTTAKAQGVHSGRSPAGLAAGAIYAATRLTNEQVTQETVRAVTHVSRMTIRIRYQE 286
Query: 181 F 181
Sbjct: 287 L 287
>gi|335434083|ref|ZP_08558890.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334898148|gb|EGM36265.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 334
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 17/189 (8%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E + + LY A RQ P L +F
Sbjct: 147 RMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQAGTPRSLDEF 204
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD--- 119
+ + Y L + L + + DP+ +L +F L ++ D
Sbjct: 205 EPISRVRRQKYARAYRYLARQLELG-----IAPADPAEYLPRFVSEL------ELSDDLE 253
Query: 120 -TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
AR++L+++K+ +G+ P+GL A+Y + L G + ++ ++ + + E T+ R
Sbjct: 254 RKARELLSAVKKTGQHSGKNPTGLAAGAIYAAGLLTGDRITQQEVAETADVSEVTIRDRY 313
Query: 179 IEFENTDSG 187
E T G
Sbjct: 314 SELLETLEG 322
>gi|320100432|ref|YP_004176024.1| transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
gi|319752784|gb|ADV64542.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
Length = 315
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 9/163 (5%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV R +GR E V A+ +YLACR+ P L + + + I E+ Y
Sbjct: 152 AARIYREAVDRGLVRGRSIESVIAAAIYLACREMKVPRSLDEITRHTRIGRKEIARCYRL 211
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRK 138
L + L I + DP+ ++ + L LPG K+ A +I+ + K +T G+
Sbjct: 212 LLRELRIK-----VSTTDPADYVPRIVHGLGLPGQAVKL---AIEIINTAKEHGVTGGKD 263
Query: 139 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
P+GL AA+Y++A G K ++ +I I + E T+ R E
Sbjct: 264 PAGLAAAAVYMAAERLGEKKTQKEIAHIAGVTEVTVRNRYKEL 306
>gi|448613430|ref|ZP_21663310.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740327|gb|ELZ91833.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 326
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 149 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 206
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F+ L +K+V A
Sbjct: 207 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL--DLSKEVQSKAN 259
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 260 EIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 317
>gi|260945447|ref|XP_002617021.1| hypothetical protein CLUG_02465 [Clavispora lusitaniae ATCC 42720]
gi|238848875|gb|EEQ38339.1| hypothetical protein CLUG_02465 [Clavispora lusitaniae ATCC 42720]
Length = 217
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 128 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSG 187
M DWI GR+P+G+ GA + ++A + + + ++IV + + E T+ KRL EF+NT S
Sbjct: 1 MSSDWIHEGRRPAGIAGACVLLAARMNHINRTHAEIVAVARVGEETIQKRLNEFKNTTSA 60
Query: 188 SLTIEDF 194
+LTI +F
Sbjct: 61 NLTISEF 67
>gi|257388719|ref|YP_003178492.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171026|gb|ACV48785.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 317
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V SCLY ACRQ+ P L +
Sbjct: 141 RMASALGVPRS--VREVASVIYRRALDEDLIRGRSIEGVATSCLYAACRQEGIPRSLEEV 198
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S+ + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 199 SDVSRVEQKEIGRTYRYVAQELKLK-----MEPVDPKQYVPRFASELEL--SEEVQSKAN 251
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 252 EIIDVTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 309
>gi|224053717|ref|XP_002297944.1| predicted protein [Populus trichocarpa]
gi|118481931|gb|ABK92899.1| unknown [Populus trichocarpa]
gi|222845202|gb|EEE82749.1| predicted protein [Populus trichocarpa]
Length = 230
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 47/139 (33%)
Query: 331 TTEASDGSDNFSDIDDFEVDGYL-HNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKA 389
+T A++ S++ SDIDD E+ GYL HNE+E +K+ +WE MN++YL
Sbjct: 59 STAAANDSEDLSDIDDAEIAGYLLHNEKEMEFKRTLWEMMNKKYL--------------- 103
Query: 390 ALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLT 449
K Q K A + K P++ A++ +
Sbjct: 104 -------------------------------KGNQLKGARKVKKRTPSKKAIKIAGQTEN 132
Query: 450 KKRLSSKINYDVLEKLFDD 468
K R SSKINYDVL+KL DD
Sbjct: 133 KTRSSSKINYDVLKKLLDD 151
>gi|448589961|ref|ZP_21650020.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735076|gb|ELZ86629.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 325
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V +CLY ACR++ P L +
Sbjct: 148 RMASALGVPRS--VREVASVIYRRALDEDLIRGRSIEGVATACLYAACRKEGIPRSLEEI 205
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + ++ VDP ++ +F+ L +K+V A
Sbjct: 206 AEVSRVERKEIGRTYRYVSQELGLE-----MRPVDPKKYVPRFSSEL--DLSKEVQSKAN 258
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 259 EIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 316
>gi|124360449|gb|ABN08459.1| hypothetical protein MtrDRAFT_AC157472g6v2 [Medicago truncatula]
Length = 149
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 36/47 (76%)
Query: 330 ATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEE 376
+T EA D S++FSDIDD EVDGYL NEEE+HY++ WE +EY EE
Sbjct: 95 STAEAQDESESFSDIDDEEVDGYLLNEEERHYRQKTWENQYQEYYEE 141
>gi|448579977|ref|ZP_21644806.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445722650|gb|ELZ74307.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 325
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V +CLY ACR++ P L +
Sbjct: 148 RMASALGVPRS--VREVASVIYRRALDEDLIRGRSIEGVATACLYAACRKEGIPRSLEEI 205
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + ++ VDP ++ +F+ L +K+V A
Sbjct: 206 AEVSRVERKEIGRTYRYVSQELGLE-----MRPVDPKKYVPRFSSEL--DLSKEVQSKAN 258
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 259 EIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 316
>gi|448420259|ref|ZP_21581021.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445673877|gb|ELZ26432.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 317
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACRQ+ P L +
Sbjct: 141 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 198
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + LK VDP F+ +F L G +++V A
Sbjct: 199 AEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--GLSEEVQAKAT 251
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 252 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 309
>gi|448419740|ref|ZP_21580584.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674654|gb|ELZ27191.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 334
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 157 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 214
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S+ + E+G Y + Q L + +K VDP ++ +F+ L +K+V A
Sbjct: 215 SDVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFSSELEL--SKEVQSKAN 267
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 268 EIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 325
>gi|171185160|ref|YP_001794079.1| transcription initiation factor IIB [Pyrobaculum neutrophilum
V24Sta]
gi|226703639|sp|B1YCX0.1|TF2B_THENV RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|170934372|gb|ACB39633.1| Transcription factor TFIIB cyclin-related [Pyrobaculum neutrophilum
V24Sta]
Length = 333
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 9 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 68
++G + A Y A+ + +GR E + A+ LY+ACR P L + Y
Sbjct: 157 SMGIPRPCIEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTKA 216
Query: 69 NVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGNKKVCDTARDILAS 127
+ E+ Y L + E NV + DP++++ + ++L G +V TA DIL
Sbjct: 217 SRREVARCYRLLLR------ELNVKVPISDPTLYISRIAEQLKLSG--EVVKTAIDILQK 268
Query: 128 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+ R E
Sbjct: 269 AKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTVRNRYKEL 322
>gi|15668963|ref|NP_247767.1| transcription initiation factor IIB [Methanocaldococcus jannaschii
DSM 2661]
gi|2833587|sp|Q58192.1|TF2B_METJA RecName: Full=Transcription initiation factor IIB; Short=TFIIB;
Contains: RecName: Full=Endonuclease Mja Tfb; AltName:
Full=Mja TFIIB intein; AltName: Full=Mja Tfb intein
gi|1591481|gb|AAB98771.1| transcription initiation factor IIB (TFIIB) [Methanocaldococcus
jannaschii DSM 2661]
Length = 673
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y
Sbjct: 512 IYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYR---- 567
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 140
++A E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 568 --FLARELNIKLTPTNPIDYVPRFASELGLPG---EVESKAIQILQQAAEKGLTSGRGPT 622
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
G+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 623 GVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKEL 663
>gi|449500687|ref|XP_004161168.1| PREDICTED: uncharacterized protein LOC101224631 [Cucumis sativus]
Length = 111
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 26/107 (24%)
Query: 339 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 398
++ D+ D EV+ YL+N +E HYKKIIWE++N++YL++QAAK+
Sbjct: 27 EDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKK----------------- 69
Query: 399 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATR 445
Q L A+AV K K++Q R EA + PAQ TR
Sbjct: 70 -------QGLNVVGASAVVKKSKKRQ--RKTEAPINMPAQADTGTTR 107
>gi|218883370|ref|YP_002427752.1| transcription initiation factor IIB [Desulfurococcus kamchatkensis
1221n]
gi|218764986|gb|ACL10385.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
kamchatkensis 1221n]
Length = 319
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 9/163 (5%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E + A+ +YLACR+ P L + + + +N E+ Y
Sbjct: 156 AARIYRNAVEKGIVRGRSIESIIAATIYLACREMKVPRSLDEITRHTRVNRKEIARCYRL 215
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRK 138
L + L+I + DP ++ + L LPG K+ A +I+ K +T G+
Sbjct: 216 LLRELHIK-----VTTTDPVDYVPRIVHGLGLPGQAVKI---AIEIINKAKEQGVTGGKD 267
Query: 139 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
P+GL AA+Y++A G K ++ +I + + E T+ R E
Sbjct: 268 PAGLAAAAVYIAAEQLGEKRTQKEIAHVAGVTEVTVRNRYKEL 310
>gi|242399568|ref|YP_002994993.1| Transcription initiation factor IIB 2 [Thermococcus sibiricus MM
739]
gi|242265962|gb|ACS90644.1| Transcription initiation factor IIB 2 [Thermococcus sibiricus MM
739]
Length = 272
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 9/173 (5%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
IG I +A Y AV +GR E + ++CLY ACR + P L + ++ ++
Sbjct: 98 IGLPRNIREIAALLYRKAVINRLVRGRSIEGMVSACLYAACRIANAPRTLDEIEDFSKVD 157
Query: 70 VYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 128
E+G Y Y+ E N+ L+ +P ++ +F D+L G +K A I+
Sbjct: 158 KKEIGRSY------RYLVRELNLKLRPTNPVDYVVRFGDQL--GVTEKTKRRAMRIVNQA 209
Query: 129 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ +T+G+ P+G+ AA+Y+++L G K ++ ++ ++ + E T+ R E
Sbjct: 210 IKMGLTSGKGPTGIAAAAIYIASLLEGEKMTQREVAEVARVTEVTVRNRYKEL 262
>gi|312136694|ref|YP_004004031.1| transcription initiation factor iib (tfiib) [Methanothermus
fervidus DSM 2088]
gi|311224413|gb|ADP77269.1| Transcription initiation factor IIB (TFIIB) [Methanothermus
fervidus DSM 2088]
Length = 307
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E+V A+ LY ACR+ + P L + + + +G Y L +
Sbjct: 146 IYRDAVKKKLIRGRSIEEVVAAALYAACRKCNVPRTLDEIAEVSGVKKKGVGRTYRFLAR 205
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 142
L I L P ++ +F L G + KV A +I+ + +T+GR P+G+
Sbjct: 206 KLNIR-----LPPTSPIDYVPRFASEL--GLSGKVQSKAIEIIKKAMKKGLTSGRGPTGV 258
Query: 143 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
AALY++++ + ++ +I ++ I E T+ R E
Sbjct: 259 AAAALYIASVLLRERRTQREIAEVAGITEVTIRNRYREL 297
>gi|313126498|ref|YP_004036768.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292863|gb|ADQ67323.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 317
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACRQ+ P L +
Sbjct: 141 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 198
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + LK VDP F+ +F L G +++V A
Sbjct: 199 AEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--GLSEEVQAKAT 251
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 252 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 309
>gi|399577427|ref|ZP_10771180.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399237810|gb|EJN58741.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 325
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 7/171 (4%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G D + +A Y A+ + +GR E V L+ A R ++ P L + S+ ++
Sbjct: 153 LGAPDNVQEMASVIYRRALDEDLIRGRSIEGVATGALHAAMRCEAIPRTLEEVSDVARVD 212
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
+G Y L Q L + + DPS ++ ++ L + V A +I+A
Sbjct: 213 HNRVGRAYRHLSQELGLE-----VSPTDPSQYVPRYCSAL--DVSSLVEQKATEIVADTT 265
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+ + G+ PSG +A+Y++++ G K +++D+ + + E T+ R E
Sbjct: 266 EEGLHAGKSPSGFAASAVYLASMLCGEKETQADVADVADVTEVTIRTRYQE 316
>gi|313127213|ref|YP_004037483.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288315|ref|ZP_21479515.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293578|gb|ADQ68038.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569834|gb|ELY24404.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 150 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 207
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S+ + E+G Y + Q L + +K VDP ++ +F+ L +K+V A
Sbjct: 208 SDVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFSSEL--DLSKEVQSKAN 260
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 261 EIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 318
>gi|329766221|ref|ZP_08257779.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|393795806|ref|ZP_10379170.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329137280|gb|EGG41558.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 304
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 17/181 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++K+ L I SD ++ A Y A+ + +GR + AS LY ACR P L
Sbjct: 127 LNRLKDKLAI--SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLK 184
Query: 61 DFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 116
D NI ++ Y L + L + D + ++ I + + T R
Sbjct: 185 DVEQAANIKRKDIARCYRLLIKELDLKMPVTDSIQCVARIASRIGIAEKTKRY------- 237
Query: 117 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 176
A ++L + + ++ G+ P GL AALY+S + +G ++ DI + ++ E T+
Sbjct: 238 ----AVNVLKQAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTEVTIRN 293
Query: 177 R 177
R
Sbjct: 294 R 294
>gi|375083610|ref|ZP_09730629.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
gi|374741803|gb|EHR78222.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
Length = 306
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 9/174 (5%)
Query: 9 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 68
+G I +A Y AV +GR E + ++CLY ACR + P L + + +
Sbjct: 131 QLGLPRNIREIAAVLYRKAVINKLVRGRSIEGMVSACLYAACRIANAPRTLDEIEDVSKV 190
Query: 69 NVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILAS 127
+ E+G Y Y+A E N+ LK P ++ +F D+L G ++K A IL
Sbjct: 191 DKKEIGRSYR------YLARELNLRLKPTSPIDYVIRFGDQL--GISEKTKRRAVKILNQ 242
Query: 128 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+T+G+ P+G+ AA+Y+++L G K ++ ++ ++ + E T+ R E
Sbjct: 243 AIEKGLTSGKGPTGIAAAAIYIASLLEGEKMTQREVAEVARVTEVTVRNRYKEL 296
>gi|448286652|ref|ZP_21477877.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445574029|gb|ELY28538.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 304
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACRQ+ P L +
Sbjct: 128 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 185
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + LK VDP F+ +F L G +++V A
Sbjct: 186 AEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--GLSEEVQAKAT 238
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 239 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 296
>gi|448726653|ref|ZP_21709047.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
gi|445793983|gb|EMA44547.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
Length = 305
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y ++A + +GR E V S LY ACR++ P L +
Sbjct: 128 RMASALGVPRS--VREVASVIYRRSLADDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 185
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 186 SEVSRVERKEIGRTYRYVSQELALE-----MRPVDPKKYVPRFCSELTL--SEEVQAKAN 238
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
DI+ + + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 239 DIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 296
>gi|294883444|ref|XP_002770943.1| hypothetical protein Pmar_PMAR003232 [Perkinsus marinus ATCC 50983]
gi|239874069|gb|EER02759.1| hypothetical protein Pmar_PMAR003232 [Perkinsus marinus ATCC 50983]
Length = 179
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 24/133 (18%)
Query: 336 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 395
D ++ SD+ D E++GYL EE K IW + N+ YL E A ++ A K A + +
Sbjct: 67 DDEESISDVSDSEIEGYLLTPEESEAKSAIWHQWNKPYLMEWAIRDEQRKAKKRAEDEAK 126
Query: 396 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK--RL 453
+N K +KR + GPA +ALEAT+ L+KK L
Sbjct: 127 RNG----------------------TYKPRKRPVHSTAMGPADSALEATQMALSKKARSL 164
Query: 454 SSKINYDVLEKLF 466
S+++N LE+LF
Sbjct: 165 SNRVNMSALEELF 177
>gi|76801491|ref|YP_326499.1| transcription initiation factor TFB 1 [Natronomonas pharaonis DSM
2160]
gi|76557356|emb|CAI48933.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACRQ+ P L +
Sbjct: 146 RMSSALGVPRS--VREVASVIYRRALDDDLIRGRSIEGVATAALYAACRQEGIPRSLDEV 203
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ + E+G Y + Q L + L+ VDP ++ +F L G +++V R
Sbjct: 204 ADVARVEQKEIGRTYRYIAQELSLG-----LEPVDPVQYVPRFCSEL--GLSEEVEQKTR 256
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+ R E
Sbjct: 257 EIIEVTAEKGMLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQE 314
>gi|399578525|ref|ZP_10772272.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236411|gb|EJN57348.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 13/182 (7%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
M +M +AL + S VA Y A+ + +GR E V CLY ACRQ+ P L
Sbjct: 141 MDRMASALGVPRSTR--EVASVIYRRALNEDLIRGRSIEGVATGCLYAACRQEGIPRSLD 198
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVC 118
+ ++ + E+G Y Y+A E ++ ++ VDP F+ +F L +P ++V
Sbjct: 199 EVADVSRVPYQEIGRTY------RYVAKELSLEMRPVDPKEFVPRFASELDVP---EEVE 249
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A +I+ + + +G+ P+G AALY + L K ++ ++ + + E T+ R
Sbjct: 250 QKANEIIDTSAEAGLLSGKSPTGFAAAALYAAGLLCNKKRTQREVADVAQVTEVTIRNRY 309
Query: 179 IE 180
E
Sbjct: 310 QE 311
>gi|383619979|ref|ZP_09946385.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|448696408|ref|ZP_21697882.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|445783614|gb|EMA34442.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
Length = 321
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 11/179 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + V+ Y A+ + +GR E V SCLY CRQ+ P L +
Sbjct: 145 RMASALGVPRS--VREVSSVIYRRALTEDLIRGRSIEGVATSCLYAGCRQEGIPRSLEEV 202
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ + E+G Y Y+A E + +K VDP ++ +F L +++V A
Sbjct: 203 AEVSRVEKKEIGRTY------RYVAKELGLEMKPVDPKEYVPRFCSDL--EASEEVEMKA 254
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+ R E
Sbjct: 255 TEIIDTTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQE 313
>gi|20094294|ref|NP_614141.1| transcription initiation factor IIB [Methanopyrus kandleri AV19]
gi|24212486|sp|Q8TX21.1|TF2B_METKA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19887337|gb|AAM02071.1| Transcription initiation factor IIB [Methanopyrus kandleri AV19]
Length = 307
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + + L + ES + +A Y A +GR E V + ++ AC++ P
Sbjct: 125 LENLASKLQLPES--VRELAASIYRKAYKEGIVRGRGIESVLGAAVFAACKEARVPRTAR 182
Query: 61 DFSNYLNI-NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 119
+ + L + + E+ Y L + L + K +PS L +F +L G ++ V
Sbjct: 183 EIAEALGVSDENEILRAYRVLQRRLNLKQ-----KPTEPSDHLPRFASKL--GVSENVQA 235
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A++I+ K IT G+ P+G+ AALY++++ G + ++ +I ++ + E T+ R
Sbjct: 236 KAQEIIEKAKEKGITVGKGPAGVAAAALYIASILEGERRTQKEIAEVARVTEVTIRNRYK 295
Query: 180 EF 181
E
Sbjct: 296 EI 297
>gi|448456850|ref|ZP_21595506.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445811447|gb|EMA61454.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 581
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACR++ P L +
Sbjct: 144 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEI 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S+ + E+G Y + Q L + ++ VDP ++ +F+ L +++V A
Sbjct: 202 SDVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELE--LSEEVQSKAN 254
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 255 EIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 312
>gi|340345049|ref|ZP_08668181.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520190|gb|EGP93913.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 303
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 15/184 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R ++ ALN + +D +V A Y A+ + +GR + + A+CLY ACR
Sbjct: 117 RNLRQALNEMGKLKDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYAACRNT 176
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L D +N +NI ++ Y + + L + + VDP + + +
Sbjct: 177 ETPRTLDDVANGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGVSRIAS--IAEL 229
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
++K A +IL K + G+ P G+ AALY++ ++ G S+ DI + E T
Sbjct: 230 SEKSKRKAVEILEQAKEIGMVAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVT 289
Query: 174 LMKR 177
+ R
Sbjct: 290 IRNR 293
>gi|18312777|ref|NP_559444.1| transcription initiation factor IIB [Pyrobaculum aerophilum str.
IM2]
gi|21363011|sp|Q8ZWS3.1|TF2B_PYRAE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|18160260|gb|AAL63626.1| transcription initiation factor IIB (TFIIB) [Pyrobaculum aerophilum
str. IM2]
Length = 333
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 11/182 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++++A+ I + A Y A+ + +GR E + A+ LY+ACR P L
Sbjct: 151 LERLRSAMGIPRP--CIEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLD 208
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGNKKVCD 119
+ Y + E+ Y L + E NV + DP +++ + ++L G +V
Sbjct: 209 ELVRYTKASRREVARCYRLLLR------ELNVKVPISDPILYISRIAEQLKLSG--EVVK 260
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA DIL K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+ R
Sbjct: 261 TAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTVRNRYK 320
Query: 180 EF 181
E
Sbjct: 321 EL 322
>gi|340345821|ref|ZP_08668953.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520962|gb|EGP94685.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 303
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
SD ++ Y A+ + +GR + A+ LY ACR P L D SN +NI +
Sbjct: 136 SDAVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLTDVSNGINIKRKD 195
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDW 132
+ Y L + L + + V+P + + + + G ++K A +IL +
Sbjct: 196 IARCYRLLLRELDLK-----MPVVNPIKCVSRISS--IAGLSEKTKRKAVEILDQAAKIE 248
Query: 133 ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
++ G+ P GL AALY+S + +G ++ DI + E T+ R
Sbjct: 249 LSAGKDPMGLAAAALYLSCVINGENKTQKDIAVSAGVTEVTIRNR 293
>gi|110667197|ref|YP_657008.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109624944|emb|CAJ51356.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 329
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A++ + +GR E V S LY ACR++ P L +
Sbjct: 152 RMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVSTSALYAACRKEGIPRSLEEI 209
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +K+V A
Sbjct: 210 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSEL--DLSKEVQSKAD 262
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 263 EIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 320
>gi|307192899|gb|EFN75927.1| Transcription factor IIIB 90 kDa subunit [Harpegnathos saltator]
Length = 190
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
++ V A FY +A++ T+GR+ QA+C+Y+ CR + +LID S+ L I V+E
Sbjct: 102 NNHCVETAMGFYKMALSYRLTRGRKQAHNQAACVYITCRTERTSHMLIDISDVLQICVHE 161
Query: 73 LGAVYLQLCQVLYI 86
LG Y++ + L+I
Sbjct: 162 LGRTYVKFAKALHI 175
>gi|452206957|ref|YP_007487079.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083057|emb|CCQ36340.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 318
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACRQ+ P L +
Sbjct: 142 RMSSALGVPRS--VREVASVIYRRALDDDLIRGRSIEGVATAALYAACRQEGIPRSLDEV 199
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + L+ VDP ++ +F L G +++V R
Sbjct: 200 AEVARVEQKEIGRTYRYIAQELSLG-----LEPVDPVQYVPRFCSEL--GLSEEVEQKTR 252
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+ R E
Sbjct: 253 EIIEVTAEKGMLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQE 310
>gi|409049636|gb|EKM59113.1| hypothetical protein PHACADRAFT_249341 [Phanerochaete carnosa
HHB-10118-sp]
Length = 350
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 11/167 (6%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
I +AK+ Y + +G+ E V A+C+++ACR+ P + N +++ LG
Sbjct: 151 ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRKAHVPRTFREICNLTHVSKKVLGQ 210
Query: 76 VYLQLCQVLYIADESNVLKQVD-------PSIFLHKFTDRL-LPGGNKKVCDTARDILAS 127
Y QL Q + ++ +Q P L ++ + L LP + +C DI+
Sbjct: 211 CYKQLEQAFNLTPGASADRQTSSATSSTGPEDLLVRYCNHLDLPPNVQPICS---DIIVK 267
Query: 128 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
+ I GR P + G A+Y + G S DI + + EAT+
Sbjct: 268 ARDLGIALGRSPISVAGGAIYFTCHLLGKPKSMKDISAVAGVSEATI 314
>gi|385802603|ref|YP_005839003.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728095|emb|CCC39217.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 329
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A++ + +GR E V S LY ACR++ P L +
Sbjct: 152 RMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVSTSALYAACRKEGIPRSLEEI 209
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +K+V A
Sbjct: 210 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSEL--DLSKEVQSKAD 262
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 263 EIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 320
>gi|448331660|ref|ZP_21520921.1| transcription initiation factor IIB [Natrinema versiforme JCM
10478]
gi|445608983|gb|ELY62798.1| transcription initiation factor IIB [Natrinema versiforme JCM
10478]
Length = 235
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + +A Y A+ + +GR E V SCLY ACRQ P L +
Sbjct: 59 RMASALGVPRS--VREIASVIYRRALDEDLIRGRSIEGVATSCLYAACRQDGIPRSLEEI 116
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 117 ADVSRVERKEIGRTYRYVAQELSLE-----MEPVDPKEYVPRFCSEL--DSSEEVLAKAN 169
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ D+ + + E T+ R E
Sbjct: 170 EIIDVTADQGLLSGKSPTGYAAAAIYAASLLCNEKKTQRDVADVAQVTEVTIRNRYQE 227
>gi|161527532|ref|YP_001581358.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160338833|gb|ABX11920.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 301
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 17/181 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++K+ L I SD ++ A Y A+ + +GR + AS LY ACR P L
Sbjct: 124 LNRLKDKLAI--SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLK 181
Query: 61 DFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 116
D NI ++ Y L + L + D + ++ I + + T R
Sbjct: 182 DVEQAANIKRKDIARCYRLLVKELDLKMPVTDSIQCVARIASRIGIAEKTKRY------- 234
Query: 117 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 176
A +L + + ++ G+ P GL AALY+S + +G ++ DI + ++ E T+
Sbjct: 235 ----AVKVLKKAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTEVTIRN 290
Query: 177 R 177
R
Sbjct: 291 R 291
>gi|354611426|ref|ZP_09029382.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196246|gb|EHB61748.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 330
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 17/189 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V S LY A RQ
Sbjct: 139 RNLKQALGEIERMSSALGLPDNVRETASVIYRRALNEDLLPGRSIEGVATSALYAAARQA 198
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 112
+ P L + +N + E+ Y + + L + + DP+ ++ +F L LP
Sbjct: 199 NTPRSLDEVANVSRVERDEIARTYRYVVRELGLE-----VAPTDPASYVPRFCSELDLP- 252
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+V AR++L + + IT+G+ P GL AA+Y ++L + ++S++ + +I E
Sbjct: 253 --DEVERRARELLTAAEDAGITSGKSPVGLAAAAVYAASLLTNERITQSEVSDVANISEV 310
Query: 173 TLMKRLIEF 181
T+ R E
Sbjct: 311 TIRNRYHEI 319
>gi|48478412|ref|YP_024118.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431060|gb|AAT43925.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 304
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 7/172 (4%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G +I A Y AV RN +GR E + + +Y ACRQ + P L + S +IN
Sbjct: 131 LGIPKDIKESAALIYRKAVERNLIRGRSIESIVCAAIYAACRQVNIPRTLDEISKAADIN 190
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
++G Y L + L + LK P ++ +F ++L +K V + +I+ +
Sbjct: 191 KKKIGKAYRHLAKELKLN-----LKPTTPYSYVSQFCNKL--NLDKDVIIKSEEIIRRVN 243
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
I+ G+ P+G+ AA+Y++A+ G ++ +I K+ + E T+ R E
Sbjct: 244 ETGISAGKGPTGVAAAAIYIAAIISGKPKTQKEISKVSGVTEVTIRNRYKEI 295
>gi|448737144|ref|ZP_21719196.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445804357|gb|EMA54614.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 305
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y ++A + +GR E V S LY ACR++ P L +
Sbjct: 128 RMASALGVPRS--VREVASVIYRRSLADDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 185
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 186 SEVSRVERKEIGRTYRYVSQELALE-----MRPVDPKKYVPRFCSELTL--SEEVQAKAN 238
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
DI+ + + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 239 DIIETTADEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 296
>gi|126289989|ref|XP_001364012.1| PREDICTED: transcription factor IIIB 90 kDa subunit [Monodelphis
domestica]
Length = 681
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 27/132 (20%)
Query: 334 ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 393
+ DG + + IDD E+D Y+ NE E K +W + + +Y++EQ KEA A K
Sbjct: 446 SGDGELDLNGIDDSEIDRYILNENEAQIKAELWMKEHADYVKEQKEKEARIAKEK----- 500
Query: 394 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 453
EL KE + K++++ + A TA EA +ML +K++
Sbjct: 501 -------------ELGIY---------KEHKPKKSSKKREPIQASTAGEAIEKMLEQKKI 538
Query: 454 SSKINYDVLEKL 465
SSKINY+VL L
Sbjct: 539 SSKINYNVLRDL 550
>gi|386874729|ref|ZP_10116955.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807352|gb|EIJ66745.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 301
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 17/181 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++K+ L I SD ++ A Y A+ + +GR + AS LY ACR + P L
Sbjct: 124 LNRLKDKLAI--SDAVIEKAAYIYRKALEKGLVRGRSISALMASALYAACRDTATPRNLK 181
Query: 61 DFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 116
D NI ++ Y L + L + D + ++ I + + T R
Sbjct: 182 DVEEAANIKRKDIARCYRLLVKELDLKMPVTDSIQCVARIASRIGIAEKTKRY------- 234
Query: 117 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 176
A +L + + ++ G+ P GL AALY+S + +G ++ DI + ++ E T+
Sbjct: 235 ----AVKVLKLAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTEVTIRN 290
Query: 177 R 177
R
Sbjct: 291 R 291
>gi|14195251|sp|Q9P9I7.1|TF2B_METTL RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|6735522|emb|CAB69073.1| archaeal transcription factor B [Methanothermococcus
thermolithotrophicus]
Length = 339
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEGSRVDRKEIGRTYR---- 233
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 140
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLTPTNPIDYVPRFASELKLPG---EVESKAISILQKANEKGLTSGRGPT 288
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
G+ AA+Y++++ HG + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLHGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|448409173|ref|ZP_21574555.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445673121|gb|ELZ25683.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 313
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V +CLY ACRQ+ P L +
Sbjct: 137 RMASALGVPRS--VREVASVIYRRALDEDLIRGRSIEGVATACLYAACRQEDIPRSLEEV 194
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 195 SEVSRVEQKEIGRTYRYVAQELSLK-----MEPVDPKQYVPRFVSELEL--SEEVQAKAN 247
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 248 EIIDVTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 305
>gi|222478746|ref|YP_002564983.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451648|gb|ACM55913.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACR++ P L +
Sbjct: 156 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEI 213
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S+ + E+G Y + Q L + ++ VDP ++ +F+ L +++V A
Sbjct: 214 SDVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELEL--SEEVQSKAN 266
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 267 EIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 324
>gi|332028617|gb|EGI68652.1| Transcription factor IIIB 90 kDa subunit [Acromyrmex echinatior]
Length = 182
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
L +G + + + FY +A+ + T+GR+ QA+C+Y+ CR + +LID S+ L
Sbjct: 96 CLQLGLNQNCIETSVNFYKMALCYHLTRGRKQAHNQAACVYITCRIEKTEHMLIDISDVL 155
Query: 67 NINVYELGAVYLQLCQVLYI 86
+I V+ELG YL+ L I
Sbjct: 156 HICVHELGRTYLRFTTALRI 175
>gi|119873155|ref|YP_931162.1| transcription initiation factor IIB [Pyrobaculum islandicum DSM
4184]
gi|189029860|sp|A1RV37.1|TF2B_PYRIL RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|119674563|gb|ABL88819.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum islandicum
DSM 4184]
Length = 333
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 9/177 (5%)
Query: 9 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 68
++G V A Y A+ + +GR E + A+ LY+ACR P L + Y
Sbjct: 157 SMGVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTKA 216
Query: 69 NVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGNKKVCDTARDILAS 127
+ E+ Y L + E NV + DP +++ + ++L G +V TA +IL
Sbjct: 217 SRREVARCYRLLLR------ELNVKVPISDPVLYISRIAEQLKLSG--EVVKTAIEILQK 268
Query: 128 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184
K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+ R E T
Sbjct: 269 AKKAGITAGKDPAGLAAAAVYIASLLHGDNRTQKDFAVAAGVTEVTVRNRYKELAKT 325
>gi|448498359|ref|ZP_21610792.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445698780|gb|ELZ50819.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACR++ P L +
Sbjct: 140 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEI 197
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S ++ E+G Y + Q L + ++ VDP ++ +F+ L +++V A
Sbjct: 198 SEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL--ELSEEVQSKAN 250
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 251 EIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 308
>gi|159111980|ref|XP_001706220.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia lamblia ATCC
50803]
gi|29293103|gb|AAO72320.1| transcription factor IIB-related protein [Giardia intestinalis]
gi|157434314|gb|EDO78546.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia lamblia ATCC
50803]
Length = 476
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 27/221 (12%)
Query: 15 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 74
E+V A +Y + T+GRR + A+ LY+ RQ + LLID+++ LN++V+ L
Sbjct: 88 ELVRKASDYYANCLRDKATRGRRNNLLAAALLYIVGRQHNLSHLLIDYADALNVSVFTLN 147
Query: 75 AVYLQ--LCQV---LYIADESNVLKQVDPSIFLHKFTD--------RLLPGGNKKVCDTA 121
Y+Q L Q L D ++L + SI +FT L + D
Sbjct: 148 K-YIQPFLRQYNIKLPYQDLESLLPRFVDSILKEEFTTAFQDNRDCMLFANIHITSVDQL 206
Query: 122 RD--------ILASMKRDWITTGRKPSGLCGAALYVS--ALTHGLKFSKSDIVKIVHICE 171
R+ IL + I TGR PSGL GA+++V+ L +G+ + I + V
Sbjct: 207 REHTLVVSKYILKASTAINIHTGRLPSGLLGASIFVALKLLNYGIPIHR--ISRCVFCSP 264
Query: 172 ATLMKRLIEFENTDS-GSLTIEDFMARKKELHEGVAANLPN 211
T+ +RL E ++++ LTI D + EGV P+
Sbjct: 265 DTIARRLQEMQSSELFAKLTIGDVLRNVDLDLEGVDVRPPS 305
>gi|448434664|ref|ZP_21586438.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|448531800|ref|ZP_21621088.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445684660|gb|ELZ37033.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445707005|gb|ELZ58873.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACR++ P L +
Sbjct: 140 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEI 197
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S ++ E+G Y + Q L + ++ VDP ++ +F+ L +++V A
Sbjct: 198 SEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELEL--SEEVQSKAN 250
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 251 EIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 308
>gi|390937904|ref|YP_006401642.1| transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
gi|390191011|gb|AFL66067.1| Transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
Length = 319
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 9/163 (5%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E + A+ +YLACR+ P L + + + +N E+ Y
Sbjct: 156 AARIYRNAVEKGIVRGRSIESIIAATIYLACREMKVPRSLDEITRHTRVNRKEIARCYRL 215
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRK 138
L + L I + DP ++ + L LPG K+ A +I+ K +T G+
Sbjct: 216 LLRELRIK-----VATTDPVDYVPRIVHGLGLPGQAVKI---AIEIINKAKEQGVTGGKD 267
Query: 139 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
P+GL AA+Y++A G K ++ +I + + E T+ R E
Sbjct: 268 PAGLAAAAVYIAAEQLGEKRTQKEIAHVAGVTEVTVRNRYKEL 310
>gi|448575781|ref|ZP_21642061.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448591050|ref|ZP_21650815.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445730722|gb|ELZ82310.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445734546|gb|ELZ86105.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 316
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACRQ+ P L +
Sbjct: 140 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 197
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + LK VDP F+ +F L +++V A
Sbjct: 198 AEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--NLSEEVQSKAT 250
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 251 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 308
>gi|407465174|ref|YP_006776056.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048362|gb|AFS83114.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 315
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ +K+ L++ SD ++ A Y A+ + KGR + A+ LY ACR P L
Sbjct: 131 LSTLKDKLSL--SDAVIEKASYIYRKALEKGLVKGRSISALIAASLYAACRDTETPRTLK 188
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
D S+ NI ++ Y L Q L + + VDP + + + G +K
Sbjct: 189 DVSDAGNIKKKDISRCYRILHQELELK-----MPVVDPVQCVARIASSI--GITEKTKRY 241
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
A +L + + G+ P GL AALY+S + +G ++ DI + ++ E T+ R
Sbjct: 242 AVKVLKDAQAHEESAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTEVTIRNR 298
>gi|448424065|ref|ZP_21582191.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448448397|ref|ZP_21591210.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|448478955|ref|ZP_21603961.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|448491995|ref|ZP_21608663.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|448512210|ref|ZP_21616324.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448520833|ref|ZP_21618166.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445682730|gb|ELZ35143.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445692213|gb|ELZ44394.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445694530|gb|ELZ46655.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702969|gb|ELZ54908.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445814813|gb|EMA64771.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445822785|gb|EMA72547.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACRQ+ P L +
Sbjct: 141 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEV 198
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ + E+G Y + Q L + LK VDP F+ +F L +++V A
Sbjct: 199 ADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASSLQL--SEEVQSKAT 251
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 252 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 309
>gi|354612079|ref|ZP_09030031.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191657|gb|EHB57163.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 320
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 143 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + +K VDP ++ +F L +++V A
Sbjct: 201 SEVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFCSELEL--SEEVQSKAN 253
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 254 EIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 311
>gi|170291077|ref|YP_001737893.1| transcription factor TFIIB cyclin-related protein [Candidatus
Korarchaeum cryptofilum OPF8]
gi|170175157|gb|ACB08210.1| Transcription factor TFIIB cyclin-related [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 356
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 10/183 (5%)
Query: 1 MRQMKNALN-IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 59
+R++++A + + E + A Y +A KGR + + A+ +Y ACR+ P L
Sbjct: 144 LRKIRDAADSLVLPQETIEDAATLYRMAARAGLVKGRSMDAMVAAVIYAACRRTDVPKTL 203
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 118
+ S + + E+G + L + L I + P F++ +L LP ++V
Sbjct: 204 EEISKFFALEEKEIGRSFRFLFRKLGIQ-----IPPPKPENFVYLIASKLSLP---EEVA 255
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A I+ KR+ T GR+P G+ AA+Y++ GL ++ ++ + ++ E T+ R
Sbjct: 256 TQAIRIIKIAKRNGATMGREPVGVAAAAVYMACQELGLHRTQRELAQAANVTEVTVRNRY 315
Query: 179 IEF 181
E
Sbjct: 316 KEL 318
>gi|15789546|ref|NP_279370.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235257|ref|YP_001688457.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195248|sp|Q9HSF7.1|TF2B7_HALSA RecName: Full=Transcription initiation factor IIB 7; Short=TFIIB 7
gi|10579892|gb|AAG18850.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726323|emb|CAP13104.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 323
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 146 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 203
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + +K VDP ++ +F L ++V A
Sbjct: 204 SEVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFCSELEL--TEEVQSKAN 256
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 257 EIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 314
>gi|76803221|ref|YP_331316.1| transcription initiation factor TFB 8 [Natronomonas pharaonis DSM
2160]
gi|76559086|emb|CAI50684.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S I VA Y A+ + +GR E V + LY ACR++ P L +
Sbjct: 148 RMSSALGVPRS--IREVASVIYRRALDDDLIRGRSIEGVATAALYAACRKEGIPRSLEEI 205
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A+
Sbjct: 206 SEVSRVERKEIGRTYRYISQELGLE-----MEPVDPQKYVPRFCSELEL--SEEVQSKAK 258
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
DI+ + + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+ R E
Sbjct: 259 DIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQE 316
>gi|399578723|ref|ZP_10772468.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236182|gb|EJN57121.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 9/180 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
M +M +AL G VA Y A+ + +GR E V SCLY ACR + P L
Sbjct: 141 MDRMASAL--GAPRSTREVASVLYRRALNEDLIRGRSIEAVSTSCLYAACRMEGIPRSLD 198
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ + + E+G Y + Q L + ++ VDP ++ +F L G +++V
Sbjct: 199 EVTEVARVPYKEIGRTYRYIAQELKLE-----MQPVDPKEYVPRFASEL--GVSEEVKQK 251
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +I+ + +G+ P+G AALY ++L K ++ ++ ++ + E T+ R E
Sbjct: 252 ANEIIDVSAEQGLLSGKSPTGFAAAALYAASLLCNEKKTQREVAEVSQVTEVTIRNRYQE 311
>gi|448336058|ref|ZP_21525172.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
gi|445630482|gb|ELY83744.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
Length = 176
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 11/175 (6%)
Query: 4 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 63
M +AL + S + VA Y A++ + +GR E V SCLY CRQ+ P L + +
Sbjct: 1 MASALGVPRS--VREVASVIYRQALSNDLIRGRSIEGVATSCLYAGCRQEGIPRSLDEVT 58
Query: 64 NYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ E+G Y YIA E ++ +K DP ++ +F L G K+ A
Sbjct: 59 EVSRVGKKEIGRTY------RYIAKELSLEMKPADPKEYVPRFCSDLEVGEEVKM--KAI 110
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
+I+ + +G+ P+G AA+Y ++L K ++ +I ++ + E T+ R
Sbjct: 111 EIIDESAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQKEIAEVAQVTEVTIRNR 165
>gi|407462181|ref|YP_006773498.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045803|gb|AFS80556.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 297
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G S+ + + A +GR ++ + A+ LY++CRQ P L D S NI
Sbjct: 127 LGISENTIEGTSSLFRRAQKHQLIRGRSSDDLMAAALYVSCRQTMTPRSLEDISEIANIT 186
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
+LQ + I + VL Q + S FL K ++ L G ++K A IL+ ++
Sbjct: 187 -----KKHLQKSVRVLINEFGLVLPQYNISSFLTKLSNDL--GFSEKTKRYALKILSDVE 239
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
+ G+ P G A+LY++++ G S+S KI I TL R
Sbjct: 240 KCGSAAGKNPIGQAAASLYLASMLMGENISQSTFSKISGISTVTLRNR 287
>gi|448470225|ref|ZP_21600422.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445808303|gb|EMA58375.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 317
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACRQ+ P L +
Sbjct: 141 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEV 198
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ + E+G Y + Q L + LK VDP F+ +F L +++V A
Sbjct: 199 ADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASALQL--SEEVQSKAT 251
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 252 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 309
>gi|340344812|ref|ZP_08667944.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519953|gb|EGP93676.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 309
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 11/187 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++K+ L++ SD ++ A Y A+ + +GR + AS LY ACR P L
Sbjct: 131 LSRLKDKLSL--SDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLK 188
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
D S+ NI ++ Y L + L + + VDP + + +L G ++K
Sbjct: 189 DVSDAGNIKKKDIARCYRLLHRELDLK-----MPVVDPIQCVARIASKL--GISEKTKRF 241
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL-- 178
A +L + + + G+ P GL AALY+S + + ++ DI + + E T+ R
Sbjct: 242 AVKVLKTAQEHEESAGKDPMGLAAAALYLSCVNNCENMTQRDIAEAASVTEVTIRNRYKG 301
Query: 179 IEFENTD 185
+ + TD
Sbjct: 302 LRLDQTD 308
>gi|448595941|ref|ZP_21653388.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445742395|gb|ELZ93890.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 317
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACRQ+ P L +
Sbjct: 141 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 198
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + LK VDP F+ +F L +++V A
Sbjct: 199 AEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--DLSEEVQAKAT 251
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+ R E
Sbjct: 252 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQE 309
>gi|118577046|ref|YP_876789.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195567|gb|ABK78485.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 303
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 17/181 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++K+ L I SD ++ A Y A+ + +GR + AS LY ACR + P L
Sbjct: 126 LNRLKDKLAI--SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTATPRNLK 183
Query: 61 DFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 116
D NI ++ Y L + L + D + ++ I + + T R
Sbjct: 184 DVEEAANIKRKDIARCYRLLVKELDLRMPVTDSIQCVARISSHIGIAEKTKRY------- 236
Query: 117 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 176
A +L ++ ++ G+ P GL AALY+S + +G ++ DI ++ E T+
Sbjct: 237 ----AVVVLKEAQKHEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIADAANVTEVTIRN 292
Query: 177 R 177
R
Sbjct: 293 R 293
>gi|448503002|ref|ZP_21612866.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693404|gb|ELZ45556.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACRQ+ P L +
Sbjct: 141 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEV 198
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ + E+G Y + Q L + LK VDP F+ +F L +++V A
Sbjct: 199 ADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASALQL--SEEVQSKAT 251
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 252 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 309
>gi|222479916|ref|YP_002566153.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452818|gb|ACM57083.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 317
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACRQ+ P L +
Sbjct: 141 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEV 198
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ + E+G Y + Q L + LK VDP F+ +F L +++V A
Sbjct: 199 ADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASALQL--SEEVQSKAT 251
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 252 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 309
>gi|110667821|ref|YP_657632.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385803264|ref|YP_005839664.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109625568|emb|CAJ51995.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728756|emb|CCC39917.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 317
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACRQ+ P L +
Sbjct: 141 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 198
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + L+ VDP F+ +F+ L +++V A
Sbjct: 199 AEVSRVPQKEIGRTYRYISQELGLE-----LRPVDPKQFVPRFSSSL--HLSEEVQSKAT 251
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 252 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 309
>gi|448405176|ref|ZP_21572617.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
gi|445662584|gb|ELZ15349.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
Length = 325
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A++ + +GR E V SCLY CRQ+ P L +
Sbjct: 149 RMASALGVPRS--VREVASVIYRQALSEDLIRGRSIEGVATSCLYAGCRQEGIPRSLEEV 206
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ + E+G Y YIA E ++ +K DP ++ +F L K+ A
Sbjct: 207 TEVSRVGKKEIGRTY------RYIAKELSLEMKPADPKEYVPRFCSDLEVSEEVKM--KA 258
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+ R E
Sbjct: 259 IEIIDESAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQKEVAEVAQVTEVTIRNRYQE 317
>gi|448492136|ref|ZP_21608730.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445691595|gb|ELZ43779.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 317
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACR++ P L +
Sbjct: 140 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEI 197
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S ++ E+G Y + Q L + ++ VDP ++ +F+ L +++V A
Sbjct: 198 SEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL--ELSEEVQSKAN 250
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 251 EIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 308
>gi|408403674|ref|YP_006861657.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364270|gb|AFU58000.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 269
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 9/169 (5%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G SD ++ Y A R +GR + + LY+ACR+ L D + NI
Sbjct: 98 LGVSDAVIEKTAYIYRKAQERGLVRGRTISAMVGAALYIACRETGASRTLKDIAEIGNIK 157
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASM 128
+L +Y + L + + +DP + + +R L K+V A +I+ +
Sbjct: 158 RKDLARIYRLVVMELDLK-----IPMIDPMKCIVRVANRANLSERTKRV---AMNIMKGV 209
Query: 129 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
+ I+ G+ P GL + LY++ L G +++DI + + E T+ R
Sbjct: 210 TKSGISAGKDPMGLAASVLYLACLNTGESRTQTDIAEAAGVTEVTVRNR 258
>gi|253743265|gb|EES99717.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia intestinalis
ATCC 50581]
Length = 477
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 29/222 (13%)
Query: 15 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 74
E+V A +Y + T+GRR + A+ LY+ RQ + LLID+++ LN++V+ L
Sbjct: 88 ELVRKASDYYANCLRDKATRGRRNNLLAAALLYIVGRQHNLSHLLIDYADALNVSVFTLN 147
Query: 75 AVYLQ--LCQV---LYIADESNVLKQVDPSIFLHKFTDRL------LPGGNKKVCDT--- 120
Y+Q L Q L D ++L + SI +FT + N + T
Sbjct: 148 K-YIQPFLRQYNIKLPYQDLESLLPRFVDSILKEEFTTVFQDNRDCMLFANIHIASTDQL 206
Query: 121 -------ARDILASMKRDWITTGRKPSGLCGAALYVS--ALTHGLKFSKSDIVKIVHICE 171
++ IL + I TGR PSGL GA+++V+ L +G+ + + + V
Sbjct: 207 REHTLAVSKYILKASIAINIHTGRLPSGLLGASIFVALKLLNYGIPIHR--VARCVFCSP 264
Query: 172 ATLMKRLIEFENTDSGS-LTIEDFMARKKELH-EGVAANLPN 211
T+ +RL E ++++ + +TI D + R EL+ EGV P+
Sbjct: 265 DTIARRLQEMQSSELFTKITIGDVL-RNVELNIEGVDIRPPS 305
>gi|167044633|gb|ABZ09305.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG7F19]
Length = 300
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 9/183 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
M +MK L++ +D ++ A Y A+ R KGR + A+C+Y +CR L
Sbjct: 125 MDKMKAKLSL--TDPVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYASCRNTETSRTLD 182
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
D +N +NI ++ Y + + L + + DP + + + G +K
Sbjct: 183 DIANGINIRRKDVARCYRLIFRELDLK-----IPVPDPVKGVSRIAS--IAGLGEKTKRK 235
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +IL K+ I G+ P G+ AALY++ ++ G ++ +I + E T+ R
Sbjct: 236 AINILNKAKKLGIVAGKDPMGIAAAALYLACISSGGSKTQKEISIASGVTEVTIRNRCAG 295
Query: 181 FEN 183
N
Sbjct: 296 LRN 298
>gi|379003108|ref|YP_005258780.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Pyrobaculum oguniense TE7]
gi|375158561|gb|AFA38173.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Pyrobaculum oguniense TE7]
Length = 348
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 9/174 (5%)
Query: 9 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 68
++G V A Y A+ + +GR E + A+ LY+ACR P L + Y
Sbjct: 172 SMGVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMRMPRPLDELVRYTKA 231
Query: 69 NVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGNKKVCDTARDILAS 127
+ E+ Y L + E NV + DP +++ + ++L G +V A DIL
Sbjct: 232 SRREVARCYRLLLR------ELNVKVPISDPVLYISRIAEQLKLSG--EVVKAAIDILQR 283
Query: 128 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+ R E
Sbjct: 284 AKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTVRNRYKEL 337
>gi|327401743|ref|YP_004342582.1| transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
gi|327317251|gb|AEA47867.1| Transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
Length = 329
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + +S + A Y AV +N +GR E V A+ LY ACRQ P L +
Sbjct: 150 RMASALGLPKS--VRETAAVIYRKAVDKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEI 207
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ Y ++ E+G Y +IA E + L P+ ++ +F L G+ V A
Sbjct: 208 ATYSRVDRKEIGRTY------RFIARELGLKLMPTSPADYVPRFCAALGLSGD--VQKKA 259
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+I+ + +T+GR P+G+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 260 IEIIKKAEEKELTSGRGPTGVAAAAIYIASILGGERRTQREVAEVAGVTEVTIRNRYKEL 319
>gi|336121697|ref|YP_004576472.1| transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
gi|334856218|gb|AEH06694.1| Transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
Length = 336
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 9/160 (5%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y + +
Sbjct: 175 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEISRVDRKEIGRTYRFISR 234
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 141
L I L +P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 235 ELKIR-----LAPTNPIDYVPRFASELKLPG---EVESKAIAILQKANEKGLTSGRGPTG 286
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ AA+Y++++ HG + ++ ++ + + E T+ R E
Sbjct: 287 VAAAAIYIASVLHGTRRTQREVADVAGVTEVTIRNRYKEL 326
>gi|322370540|ref|ZP_08045098.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549957|gb|EFW91613.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 328
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 24/202 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G + A Y A+ + GR E V S +Y A RQ
Sbjct: 137 RNLKQALGEIDRMASALGLPKNVRETASVIYRRALDDDLLPGRSIEGVATSAVYAAARQT 196
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + + I+ E Y + + L + ++ DP ++ +F L
Sbjct: 197 GVPRSLDEVAAVSRIDEMEFKRTYRYIVRELGLE-----IQPADPLSYVSRFASDL---- 247
Query: 114 NKKVCD----TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 169
+ D A+D+L + K + +G+ P GL AA+Y +L K ++S++ + ++
Sbjct: 248 --DISDESERRAKDLLKTAKEQGVHSGKSPVGLAAAAVYAGSLLSNEKVTQSEVSDVANV 305
Query: 170 CEATLMKRLIE-FENTDSGSLT 190
E T+ R E E + G +T
Sbjct: 306 SEVTIRNRYQELLEASQDGGVT 327
>gi|288931755|ref|YP_003435815.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288894003|gb|ADC65540.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 328
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 92/180 (51%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + +S + A Y AV +N +GR E V A+ LY ACRQ P L +
Sbjct: 149 RMASALGLPKS--VRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEI 206
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ Y ++ E+G Y +IA E + L P+ ++ +F L G + +V A
Sbjct: 207 ATYSRVDRKEIGRTY------RFIARELGLKLLPTSPADYVPRFCAAL--GLSGEVQKKA 258
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+I+ + +T+GR P+G+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 259 IEIIKKAEEKELTSGRGPTGVAAAAIYIASILTGERRTQREVAEVAGVTEVTIRNRYKEL 318
>gi|335436571|ref|ZP_08559364.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334897534|gb|EGM35665.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 323
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ N GR E V + LY A RQ P L +
Sbjct: 144 RMASALGLPEN--VRETASVIYRRALDENLLPGRSIEGVSTASLYAAARQAGNPRSLDEI 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
N + E+ Y Y+ E N+ +K DP+ ++ +F L +++ A
Sbjct: 202 DNVSRVEKDEVARTYR------YVVRELNLEVKPADPTSYVPRFASDL--DLSEEAERHA 253
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
RD+L + KR+ + +G+ P GL AA+Y ++L K +++++ ++ +I E T+ R E
Sbjct: 254 RDLLENAKREGVHSGKSPVGLAAAAIYAASLLANEKVTQNEVSEVANISEVTIRNRYHEL 313
>gi|297619914|ref|YP_003708019.1| transcription factor TFIIB cyclin-like protein [Methanococcus
voltae A3]
gi|297378891|gb|ADI37046.1| Transcription factor TFIIB cyclin-related protein [Methanococcus
voltae A3]
Length = 337
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 176 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 231
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 140
+I+ E N+ L +P ++ +F L LPG +V A IL + +T+GR P+
Sbjct: 232 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILKDAGKKGLTSGRGPT 286
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 287 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 327
>gi|448450737|ref|ZP_21592470.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445811248|gb|EMA61256.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 317
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACR++ P L +
Sbjct: 140 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEI 197
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S ++ E+G Y + Q L + ++ VDP ++ +F+ L +++V A
Sbjct: 198 SEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELEL--SEEVQSKAN 250
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 251 EIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 308
>gi|145592173|ref|YP_001154175.1| transcription initiation factor IIB [Pyrobaculum arsenaticum DSM
13514]
gi|189029859|sp|A4WMA6.1|TF2B_PYRAR RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|145283941|gb|ABP51523.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum
arsenaticum DSM 13514]
Length = 333
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 9/174 (5%)
Query: 9 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 68
++G V A Y A+ + +GR E + A+ LY+ACR P L + Y
Sbjct: 157 SMGVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMRMPRPLDELVRYTKA 216
Query: 69 NVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGNKKVCDTARDILAS 127
+ E+ Y L + E NV + DP +++ + ++L G +V A DIL
Sbjct: 217 SRREVARCYRLLLR------ELNVKVPISDPVLYISRIAEQLKLSG--EVVKAAIDILQR 268
Query: 128 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+ R E
Sbjct: 269 AKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTVRNRYKEL 322
>gi|448482042|ref|ZP_21605256.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445821444|gb|EMA71235.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACR++ P L +
Sbjct: 140 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEI 197
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S ++ E+G Y + Q L + ++ VDP ++ +F+ L +++V A
Sbjct: 198 SEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELEL--SEEVQSKAN 250
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 251 EIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 308
>gi|448454975|ref|ZP_21594377.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445814355|gb|EMA64320.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 345
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACRQ+ P L +
Sbjct: 174 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEV 231
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ + E+G Y + Q L + LK VDP F+ +F L +++V A
Sbjct: 232 ADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASSL--ELSEEVQSKAT 284
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 285 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 342
>gi|292655630|ref|YP_003535527.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448291763|ref|ZP_21482468.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448540907|ref|ZP_21623828.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549383|ref|ZP_21627988.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555504|ref|ZP_21631544.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448571045|ref|ZP_21639556.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448585553|ref|ZP_21647946.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448603114|ref|ZP_21656935.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448623724|ref|ZP_21670081.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|291370098|gb|ADE02325.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445573768|gb|ELY28284.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445709060|gb|ELZ60895.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712431|gb|ELZ64212.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445718249|gb|ELZ69952.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445722963|gb|ELZ74614.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445726253|gb|ELZ77870.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445746310|gb|ELZ97772.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445752252|gb|EMA03679.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 317
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACRQ+ P L +
Sbjct: 141 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 198
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + LK VDP F+ +F L +++V A
Sbjct: 199 AEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--DLSEEVQAKAT 251
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 252 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 309
>gi|448425078|ref|ZP_21582707.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448510576|ref|ZP_21615953.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448522305|ref|ZP_21618428.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445681338|gb|ELZ33772.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445695849|gb|ELZ47948.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702249|gb|ELZ54207.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 317
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACR++ P L +
Sbjct: 140 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEI 197
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S ++ E+G Y + Q L + ++ VDP ++ +F+ L +++V A
Sbjct: 198 SEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELEL--SEEVQSKAN 250
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 251 EIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 308
>gi|393795800|ref|ZP_10379164.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 303
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
SD ++ Y A+ + +GR + A+ LY ACR P L D +N +NI +
Sbjct: 136 SDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDVANSINIKRKD 195
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDW 132
+ Y L + L + + V+P + + + G ++K A +IL +
Sbjct: 196 IARCYRLLLRELDLK-----MPVVNPVKCISRISSN--AGLSEKTKRKAIEILDQAAKIE 248
Query: 133 ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
++ G+ P GL AALY+S + +G ++ DI + E T+ R
Sbjct: 249 LSAGKDPMGLAAAALYLSCVKNGEDKTQKDIAVAAGVTEVTIRNR 293
>gi|329766227|ref|ZP_08257785.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137286|gb|EGG41564.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 303
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
SD ++ Y A+ + +GR + A+ LY ACR P L D +N +NI +
Sbjct: 136 SDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDVANSINIKRKD 195
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDW 132
+ Y L + L + + V+P + + + G ++K A +IL +
Sbjct: 196 IARCYRLLLRELDLK-----MPVVNPVKCISRISSN--AGLSEKTKRKAIEILDQAAKIE 248
Query: 133 ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
++ G+ P GL AALY+S + +G ++ DI + E T+ R
Sbjct: 249 LSAGKDPMGLAAAALYLSCVKNGEDKTQKDIAVAAGVTEVTIRNR 293
>gi|448528883|ref|ZP_21620263.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710331|gb|ELZ62150.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACRQ+ P L +
Sbjct: 141 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEV 198
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ + E+G Y + Q L + L+ VDP F+ +F L +++V A
Sbjct: 199 ADVSRVPQKEIGRTYRYISQELGLE-----LRPVDPKQFVPRFASSLQL--SEEVQSKAT 251
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 252 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 309
>gi|448445090|ref|ZP_21590145.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445685396|gb|ELZ37750.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 348
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 86/172 (50%), Gaps = 9/172 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACR++ P L +
Sbjct: 142 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEI 199
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S+ ++ E+G Y + Q L + ++ VDP ++ +F+ L +++V A
Sbjct: 200 SDVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELEL--SEEVQSKAN 252
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 253 EIIETTADQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTI 304
>gi|257051641|ref|YP_003129474.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256690404|gb|ACV10741.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 330
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ N GR E V + LY A RQ P L +
Sbjct: 149 RMASALGLPEN--VRETASVIYRRALDENLLPGRSIEGVATASLYAAARQAGNPRSLDEI 206
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
I EL Y Y+ E N+ ++ DP ++ +F L N++V A
Sbjct: 207 ERVSRIGRMELTRTYR------YVVRELNLEVQPADPESYVPRFVSDLEL--NEEVSRRA 258
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R+++ S +++ + +G+ P G+ AA+Y +AL + ++ +I ++ I E T+ R E
Sbjct: 259 RELVDSARKEGVLSGKSPVGIAAAAIYAAALLSNERVTQGEISEVADISEVTIRNRYKEL 318
>gi|374325545|ref|YP_005083742.1| Transcription factor TFIIB [Pyrobaculum sp. 1860]
gi|356640811|gb|AET31490.1| Transcription factor TFIIB [Pyrobaculum sp. 1860]
Length = 333
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 9/166 (5%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A Y A+ + +GR E + A+ LY+ACR P L + Y + E+
Sbjct: 165 IEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTKASRREVARC 224
Query: 77 YLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITT 135
Y L + E NV + DP +++ + ++L G +V +A DIL K+ IT
Sbjct: 225 YRLLLR------ELNVKVPISDPILYISRIAEQLKLSG--EVIKSAIDILQKAKKAGITA 276
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
G+ P+GL AA+Y+++L HG ++ D + E T+ R E
Sbjct: 277 GKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTVRNRYKEL 322
>gi|118576516|ref|YP_876259.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195037|gb|ABK77955.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 328
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 9/177 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
M +MK+ L + +D ++ A Y A+ + +GR + A+CLY ACR P L
Sbjct: 152 MDKMKDKLAL--ADAVIEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNTETPRTLD 209
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
D + +NI ++ Y + + L + + VDP + + + N++
Sbjct: 210 DIAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGVSRIAS--IAELNERTKRR 262
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
A IL K+ + G+ P G+ AALY++ + G S+ DI + E T+ R
Sbjct: 263 AITILDQAKKLGMVAGKDPMGIAAAALYLACIGSGEAKSQKDISLASGVTEVTIRNR 319
>gi|147919688|ref|YP_686567.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
gi|110621963|emb|CAJ37241.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
Length = 337
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 17/183 (9%)
Query: 3 QMKNAL----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFL 58
+M +AL NI E+ +V Y AV++N +GR E V A+ LY ACRQ P
Sbjct: 158 RMASALGLPRNIRETSAVV------YRKAVSKNLIRGRSIEGVAAAALYAACRQNGVPRT 211
Query: 59 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC 118
L + + ++ E+G Y + + L + L P ++ +F L G +V
Sbjct: 212 LDEIAEVSRVSRKEIGRTYRFISRELGLK-----LMPTSPIDYVPRFCSGLSLKG--EVQ 264
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ + + E T+ R
Sbjct: 265 SKAVEILRQAAEKELTSGRGPTGVAAAAIYISSILCGERRTQREVANVAGVTEVTIRNRY 324
Query: 179 IEF 181
E
Sbjct: 325 KEL 327
>gi|429192472|ref|YP_007178150.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|448325884|ref|ZP_21515262.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|429136690|gb|AFZ73701.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|445613976|gb|ELY67661.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 320
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 143 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 201 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEEVQTKAN 253
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 254 EIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 311
>gi|150402961|ref|YP_001330255.1| transcription initiation factor IIB [Methanococcus maripaludis C7]
gi|189029856|sp|A6VI28.1|TF2B_METM7 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|150033991|gb|ABR66104.1| Transcription factor TFIIB cyclin-related [Methanococcus
maripaludis C7]
Length = 339
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 140
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSGRGPT 288
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|284165857|ref|YP_003404136.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|336252199|ref|YP_004595306.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|448313767|ref|ZP_21503479.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|448350243|ref|ZP_21539062.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|448362255|ref|ZP_21550866.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|448369894|ref|ZP_21556347.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|448391654|ref|ZP_21566749.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
gi|284015512|gb|ADB61463.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|335336188|gb|AEH35427.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|445597077|gb|ELY51155.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|445637750|gb|ELY90898.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|445648776|gb|ELZ01724.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|445650334|gb|ELZ03258.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|445665066|gb|ELZ17744.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
Length = 320
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 143 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 201 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEEVQTKAN 253
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 254 EIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 311
>gi|397772845|ref|YP_006540391.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448337167|ref|ZP_21526249.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|448340531|ref|ZP_21529502.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|448346310|ref|ZP_21535196.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|448400256|ref|ZP_21571323.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|397681938|gb|AFO56315.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445626513|gb|ELY79856.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629964|gb|ELY83234.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445632899|gb|ELY86105.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445667796|gb|ELZ20436.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 320
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 143 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 201 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEEVQTKAN 253
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 254 EIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 311
>gi|435848097|ref|YP_007310347.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674365|gb|AGB38557.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 320
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 143 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 201 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEEVQTKAN 253
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 254 EIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 311
>gi|448322503|ref|ZP_21511973.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445601261|gb|ELY55250.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 310
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 133 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 190
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 191 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEEVQTKAN 243
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 244 EIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 301
>gi|433590946|ref|YP_007280442.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448334479|ref|ZP_21523654.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448385421|ref|ZP_21563927.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305726|gb|AGB31538.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445619811|gb|ELY73328.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445656916|gb|ELZ09748.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 320
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 143 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 201 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEEVQTKAN 253
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 254 EIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 311
>gi|448317588|ref|ZP_21507138.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445602979|gb|ELY56949.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 310
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 133 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 190
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 191 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEEVQTKAN 243
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 244 EIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 301
>gi|159905293|ref|YP_001548955.1| transcription initiation factor IIB [Methanococcus maripaludis C6]
gi|226703638|sp|A9A8Q0.1|TF2B_METM6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|159886786|gb|ABX01723.1| Transcription factor TFIIB cyclin-related [Methanococcus
maripaludis C6]
Length = 339
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 140
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSGRGPT 288
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|289579995|ref|YP_003478461.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281233|ref|ZP_21472540.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448352650|ref|ZP_21541431.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|448358870|ref|ZP_21547544.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|289529548|gb|ADD03899.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445579163|gb|ELY33559.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|445641929|gb|ELY95000.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445644550|gb|ELY97563.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 320
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 143 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 201 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEEVQTKAN 253
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 254 EIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 311
>gi|448330825|ref|ZP_21520101.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445610661|gb|ELY64430.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 320
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 143 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 201 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEEVQTKAN 253
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 254 EIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 311
>gi|322369392|ref|ZP_08043957.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320551124|gb|EFW92773.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 287
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 110 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 167
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + +K VDP ++ +F L +++V A
Sbjct: 168 SEVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFCSELEL--SEEVQSKAN 220
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 221 NIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 278
>gi|448609114|ref|ZP_21660393.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|448615057|ref|ZP_21664085.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445747491|gb|ELZ98947.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445753144|gb|EMA04563.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 316
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACRQ+ P L +
Sbjct: 140 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 197
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + LK VDP F+ +F L +++V A
Sbjct: 198 AEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--ELSEEVQAKAT 250
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 251 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 308
>gi|448306239|ref|ZP_21496148.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445598653|gb|ELY52708.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 320
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 143 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 201 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEEVQTKAN 253
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 254 EIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 311
>gi|300712183|ref|YP_003737997.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|448295872|ref|ZP_21485935.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|299125866|gb|ADJ16205.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|445583301|gb|ELY37633.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
Length = 323
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACR++ P L +
Sbjct: 146 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATAALYAACRKEGIPRSLEEI 203
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 204 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEEVQSKAN 256
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 257 EIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 314
>gi|45357604|ref|NP_987161.1| transcription initiation factor IIB [Methanococcus maripaludis S2]
gi|74556259|sp|Q6M176.1|TF2B_METMP RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|45047164|emb|CAF29597.1| transcription initiation factor B [Methanococcus maripaludis S2]
Length = 339
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 140
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGERGLTSGRGPT 288
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|349805805|gb|AEQ18375.1| putative brf1 subunit of rna polymerase iii transcription
initiation factor iiib [Hymenochirus curtipes]
Length = 101
Score = 59.7 bits (143), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 2 RQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
RQ+ N + + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+
Sbjct: 29 RQIHNLGVQLQLNKHCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLL 88
Query: 61 DFSNYLNINVYEL 73
D S+ L +NVY L
Sbjct: 89 DLSDLLQVNVYVL 101
>gi|340623224|ref|YP_004741677.1| transcription initiation factor IIB [Methanococcus maripaludis X1]
gi|339903492|gb|AEK18934.1| transcription initiation factor IIB [Methanococcus maripaludis X1]
Length = 339
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 140
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGERGLTSGRGPT 288
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|255513741|gb|EET90006.1| Transcription factor TFIIB cyclin-related [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 380
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 7/173 (4%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G + I A Y V N +GR E V + +Y ACR+ P L + + +
Sbjct: 206 LGLPENIRENAALLYRKCVQNNLIRGRPIETVVQAVIYAACRKAGMPRTLDEIATISGLP 265
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
E+G Y + L + + DP ++ ++ + L G + + A ++L
Sbjct: 266 KKEIGRAYRAISHELGLK-----IPLTDPIAYVPRYVNALKLSGEAQ--EKAVELLNDAM 318
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
+ +GR P+G+ AA+Y++ G + ++ ++ + + E T+ R E +
Sbjct: 319 AKGLVSGRSPTGVSAAAVYIAGALAGERRTQKEVADVAGVTEVTIRNRYRELK 371
>gi|170091576|ref|XP_001877010.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648503|gb|EDR12746.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 349
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 11/170 (6%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
I +AK+ Y + +G+ E V A+C+++ACRQ P + + +++ LG
Sbjct: 152 ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICDLTHVSKKILGQ 211
Query: 76 VYLQLCQVLYIADESNVLKQVD-----PSIFLHKFTDRL-LPGGNKKVCDTARDILASMK 129
Y L Q + ++ + P L ++ + L LP + +C DI+ + +
Sbjct: 212 CYKALEQAFNLTPGASAAHASNNPATGPENLLVRYCNHLDLPPNVQSICS---DIIVAAR 268
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
+ I GR P + G A+Y + G S DI + + E T+ RL+
Sbjct: 269 KHGIADGRSPVSIAGGAIYFTCYLLGKNKSPRDISAVAGVSEGTI--RLV 316
>gi|448302993|ref|ZP_21492943.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445594000|gb|ELY48167.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 310
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 133 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 190
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 191 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEEVQTKAN 243
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 244 EIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 301
>gi|308162410|gb|EFO64809.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia lamblia P15]
Length = 476
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 27/221 (12%)
Query: 15 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 74
E+V A +Y + T+GRR + A+ LY+ RQ + LLID+++ LN++V+ L
Sbjct: 88 ELVRKASDYYANCLRDKVTRGRRNNLLAAALLYIVGRQHNLSHLLIDYADALNVSVFTLN 147
Query: 75 AVYLQ--LCQV---LYIADESNVLKQVDPSIFLHKFTD--------RLLPGGNKKVCDTA 121
Y+Q L Q L D ++L + SI +FT L + D
Sbjct: 148 K-YIQPFLRQYNIKLPYQDLESLLPRFVDSILKEEFTATFQDNRDCMLFANIHITSVDQL 206
Query: 122 RD--------ILASMKRDWITTGRKPSGLCGAALYVS--ALTHGLKFSKSDIVKIVHICE 171
R+ IL + I TGR PSGL GA+++V+ L +G+ + + + V
Sbjct: 207 REHTLVVSKYILKASTAINIHTGRLPSGLLGASIFVALKLLNYGIPIHR--VSRCVFCSP 264
Query: 172 ATLMKRLIEFENTDS-GSLTIEDFMARKKELHEGVAANLPN 211
T+ +RL E ++++ LTI D + + E + P+
Sbjct: 265 DTVARRLQEMQSSELFAKLTIGDVLRNVDLVLENIDVRPPS 305
>gi|433639225|ref|YP_007284985.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448377483|ref|ZP_21560179.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
gi|433291029|gb|AGB16852.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445655427|gb|ELZ08272.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
Length = 320
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 143 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 201 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEEVQTKAN 253
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 254 EIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 311
>gi|352682668|ref|YP_004893192.1| transcription initiation factor B [Thermoproteus tenax Kra 1]
gi|269990954|emb|CAP46908.1| transcription initiation factor IIB [Thermoproteus tenax Kra 1]
gi|350275467|emb|CCC82114.1| transcription initiation factor B [Thermoproteus tenax Kra 1]
Length = 332
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 9 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 68
++G V A Y A+ + +GR E + A+ LY+ACR P L + Y
Sbjct: 156 SMGVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMLKTPRPLDELIRYTKA 215
Query: 69 NVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGNKKVCDTARDILAS 127
+ E+ Y L + E NV + DP +++ + ++L G+ V TA DI+
Sbjct: 216 SRREVARCYRLLLR------ELNVRVPISDPVLYISRVAEQLKLTGD--VVKTAIDIINR 267
Query: 128 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
K+ +T G+ P+GL AA+Y+++L HG ++ D + E T+ R E
Sbjct: 268 AKKAGLTAGKDPAGLAAAAVYIASLLHGDNRTQKDFAVAAGVTEVTVRNRYKEL 321
>gi|150399786|ref|YP_001323553.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399791|ref|YP_001323558.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399796|ref|YP_001323563.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399801|ref|YP_001323568.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150012489|gb|ABR54941.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012494|gb|ABR54946.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012499|gb|ABR54951.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012504|gb|ABR54956.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
Length = 339
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 140
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPIDYVPRFASELKLPG---EVESKAISILQKAGERGLTSGRGPT 288
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|383319295|ref|YP_005380136.1| transcription initiation factor TFIIB [Methanocella conradii HZ254]
gi|379320665|gb|AFC99617.1| Transcription initiation factor TFIIB [Methanocella conradii HZ254]
Length = 337
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 3 QMKNAL----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFL 58
+M +AL NI E+ +V Y AV +N +GR E V A+ LY ACRQ P
Sbjct: 158 RMASALGLPRNIRETSAVV------YRKAVTKNLIRGRSIEGVAAAALYAACRQNGVPRT 211
Query: 59 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC 118
L + + ++ E+G Y + + L + L P ++ +F L G +V
Sbjct: 212 LDEIAEVSRVSRKEIGRTYRFISRELGLK-----LMPTSPIDYVPRFCSGLNLKG--EVQ 264
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ + + E T+ R
Sbjct: 265 SRAVEILRQAAEKELTSGRGPTGVAAAAIYISSILCGERRTQREVANVAGVTEVTIRNRY 324
Query: 179 IEF 181
E
Sbjct: 325 KEL 327
>gi|335437678|ref|ZP_08560448.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334895047|gb|EGM33228.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 328
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 147 RMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVATASLYAAARQAGNPRSLDEI 204
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
I+ EL Y Y+ E N+ +K DP ++ +F L +++V A
Sbjct: 205 ERVSRIDRMELTRTYR------YVVRELNLEVKPADPESYVPRFVSDL--DLSEEVSRQA 256
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R+++ S +++ + +G+ P G+ AA+Y +AL + ++ ++ ++ +I E T+ R E
Sbjct: 257 RELIESARKEGVLSGKSPVGIAAAAIYAAALLSNERITQGEVSEVANISEVTIRNRYKEL 316
>gi|399574686|ref|ZP_10768445.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240518|gb|EJN61443.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 317
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACRQ+ P L +
Sbjct: 141 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 198
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + LK VDP F+ +F L +++V A
Sbjct: 199 AEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--ELSEEVQAKAV 251
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 252 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 309
>gi|448304716|ref|ZP_21494652.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590097|gb|ELY44318.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 321
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A++ + +GR E V S LY ACR + P L +
Sbjct: 144 RMASALGVPRS--VREVASVLYRRALSEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEV 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S ++ E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 202 SAVSRVDRMEIGRTYRYISQELSLE-----MEPVDPKKYVPRFCSEL--DLSEEVQAKAN 254
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y SAL K ++ ++ + + E T+ R E
Sbjct: 255 EIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRNRYQE 312
>gi|448439550|ref|ZP_21588114.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691084|gb|ELZ43279.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 346
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 9/172 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V + LY ACRQ+ P L +
Sbjct: 141 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEV 198
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ + E+G Y + Q L + LK VDP F+ +F L +++V A
Sbjct: 199 ADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASSL--ELSEEVQSKAT 251
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 252 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTI 303
>gi|409079539|gb|EKM79900.1| hypothetical protein AGABI1DRAFT_113149 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426192509|gb|EKV42445.1| hypothetical protein AGABI2DRAFT_195784 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 9/165 (5%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
I +AK+ Y + +G+ + V A+C+++ACRQ P + +++ LG
Sbjct: 152 ISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFREICTLTHVSKKVLGQ 211
Query: 76 VYLQLCQVLYIA-----DESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMK 129
Y L Q ++ + ++ P L ++ + L LP + +C DI+ + +
Sbjct: 212 CYKALEQAFNLSPGATHNSNSSSTPTGPENLLVRYCNHLDLPANVQTICS---DIIVTAR 268
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
+ I GR P + G A+Y + L G S DI + + E T+
Sbjct: 269 KYGIADGRSPVSIAGGAIYFTCLLLGKSKSVRDISAVAGVSEGTI 313
>gi|299748194|ref|XP_002911260.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|298407858|gb|EFI27766.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 346
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 23/197 (11%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
I +AK+ Y A +G+ E V A+C+++ACR+ P + N ++ LG
Sbjct: 150 ISDIAKQLYKRADEEKLLRGKPVEAVIAACIFIACRKAHVPRTFREICNLTRVSKKMLGQ 209
Query: 76 VYLQLCQVLYIADESNV----LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKR 130
Y L Q L ++ ++ P L ++ + L LP + +C +I+ + +
Sbjct: 210 CYKALEQSLNLSGPESMPLANTPTTGPEKLLVRYCNHLDLPANVQAICS---EIIVNARN 266
Query: 131 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL---------------M 175
I GR P + G A+Y + L G +I + + E T+
Sbjct: 267 HGIADGRSPISIAGGAIYFTCLLLGKPKPIREISAVAGVSEGTIKLVYRLYYNDREKLVK 326
Query: 176 KRLIEFENTDSGSLTIE 192
K IE D LTIE
Sbjct: 327 KEWIESGKADLSRLTIE 343
>gi|395646538|ref|ZP_10434398.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
gi|395443278|gb|EJG08035.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
Length = 336
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL G + A Y AV +N +GR E V A+ LY ACRQ S P L +
Sbjct: 157 RMASAL--GLPRNVRETAAVIYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 214
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ ++ E+G Y +I+ E + L P ++ +F L G +V A
Sbjct: 215 AEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLTLKG--EVQSRA 266
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+ R E
Sbjct: 267 VEILRQAGERELTSGRGPTGVAAAAIYISSILSGERRTQREVAEVAGVTEVTIRNRYKEL 326
>gi|284161172|ref|YP_003399795.1| transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
gi|284011169|gb|ADB57122.1| Transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
Length = 329
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + +S + A Y A+ +N +GR E V A+ LY ACRQ P L +
Sbjct: 150 RMASALGLPKS--VRETAAVIYRKAIEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEI 207
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ Y ++ E+G Y +IA E + L P+ ++ +F L G + +V A
Sbjct: 208 AQYSRVDRKEIGRTY------RFIARELGLKLMPTSPADYVPRFCAAL--GLSGEVQRKA 259
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+I+ + +T+GR P+G+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 260 IEIIKKAEERELTSGRGPTGVAAAAIYIASILCGERRTQREVAEVAGVTEVTIRNRYKEL 319
>gi|448298665|ref|ZP_21488693.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445591335|gb|ELY45541.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 320
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 143 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 201 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEEVQTKAN 253
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 254 EIIEKTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 311
>gi|383621854|ref|ZP_09948260.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|448702704|ref|ZP_21700137.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|445777265|gb|EMA28235.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 320
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 143 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 201 SEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEEVQTKAN 253
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 254 EIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 311
>gi|150401578|ref|YP_001325344.1| transcription initiation factor IIB [Methanococcus aeolicus
Nankai-3]
gi|189029853|sp|A6UW60.1|TF2B_META3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|150014281|gb|ABR56732.1| Transcription factor TFIIB cyclin-related [Methanococcus aeolicus
Nankai-3]
Length = 334
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y + +
Sbjct: 173 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEMSRVDRKEIGRTYRFISR 232
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 141
L I L P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 233 ELKIR-----LAPTSPIDYVPRFASELKLPG---EVESKAISILQKAGDKGLTSGRGPTG 284
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ AA+Y++++ HG + ++ ++ + + E T+ R E
Sbjct: 285 VAAAAIYIASVLHGTRKTQREVADVAGVTEVTIRNRYKEL 324
>gi|448503020|ref|ZP_21612884.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693422|gb|ELZ45574.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 335
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 15/188 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A++ N GR E V + LY A RQ
Sbjct: 146 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATASLYAAARQV 205
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L +F+ + EL Y + + L + ++ DP+ ++ +F RL
Sbjct: 206 GNPRSLDEFTAVSRVEKMELTRTYRYVIRELGLR-----VQPADPTSYVPRFASRL--DL 258
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+++ AR++L + IT+G+ P GL AA+Y +AL K ++S + + + E T
Sbjct: 259 SEETERRARELLDDAASEGITSGKSPVGLAAAAVYAAALLSNEKVTQSQVSGVADVSEVT 318
Query: 174 LMKRLIEF 181
+ R E
Sbjct: 319 IRNRYKEL 326
>gi|333911004|ref|YP_004484737.1| transcription initiation factor IIB [Methanotorris igneus Kol 5]
gi|333751593|gb|AEF96672.1| Transcription initiation factor IIB [Methanotorris igneus Kol 5]
Length = 343
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 9/160 (5%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y L +
Sbjct: 182 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCRVPRTLDEIAEASRVDRKEIGRTYRFLAR 241
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 141
L I L +P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 242 ELGIK-----LAPTNPIDYVPRFASELGLPG---EVESKAIAILQKAAEKGLTSGRGPTG 293
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ AA+Y++++ G + ++ D+ ++ + E T+ R E
Sbjct: 294 VAAAAIYIASVLLGNRRTQRDVAEVAGVTEVTIRNRYKEL 333
>gi|379335328|gb|AFD03312.1| transcription factor TFIIB cyclin-related protein [uncultured
archaeon W4-93a]
Length = 307
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 15/184 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R ++ ALN + +D +V A Y A+ + +GR + A+CLY ACR
Sbjct: 119 RNLRQALNEMDKLKDKLALADVVVEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNT 178
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L D +N +NI ++ Y + + L + + VDP + + +
Sbjct: 179 ETPRTLDDMANGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGVSRIAS--IADL 231
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
++K A IL K + G+ P G+ AALY+S ++ G S+ +I + E T
Sbjct: 232 SEKSKRKAIIILNKAKDVGMVAGKDPMGIAAAALYLSCISSGESKSQKEISIASGVTEVT 291
Query: 174 LMKR 177
+ R
Sbjct: 292 IRNR 295
>gi|409096766|ref|ZP_11216790.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 303
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 7/177 (3%)
Query: 5 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 64
+ A+ +G + A Y AV + +GR E + ++ LY ACR + P L + +
Sbjct: 124 RMAVQMGLPKRVKEQAAVLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAR 183
Query: 65 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 124
+ + E+G Y + + L + N+L P ++ +F D L G + + AR+I
Sbjct: 184 FSKVTKKEIGRSYRFMARGLGL----NLL-PTSPIDYVDRFGDAL--GVSARTKKRAREI 236
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
L R IT+G+ P+GL AALY+++L G K ++ ++ ++ ++ E T+ R E
Sbjct: 237 LQEAIRVGITSGKGPTGLAAAALYLASLLEGEKKTQREVAEVANVTEVTVRNRYKEL 293
>gi|282165287|ref|YP_003357672.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
gi|282157601|dbj|BAI62689.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
Length = 336
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 3 QMKNAL----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFL 58
+M +AL NI E+ +V Y AV +N +GR E V A+ LY ACRQ P
Sbjct: 157 RMASALGLPRNIRETSAVV------YRKAVTKNLIRGRSIEGVAAAALYAACRQNGVPRT 210
Query: 59 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC 118
L + + ++ E+G Y + + L + L P ++ +F L G +V
Sbjct: 211 LDEIAEVSRVSRKEIGRTYRFISRELGLK-----LMPTSPIDYVPRFCSGLSLKG--EVQ 263
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ + + E T+ R
Sbjct: 264 SRAVEILRQAAEKELTSGRGPTGVAAAAIYISSILCGERRTQREVANVAGVTEVTIRNRY 323
Query: 179 IEF 181
E
Sbjct: 324 KEL 326
>gi|345007304|ref|YP_004810156.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344322930|gb|AEN07783.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 308
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 9/174 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +AL + E+ + A R + A +F +GR E + A+ +Y ACR +P L
Sbjct: 132 VRRISSALELSET--LRDQACRLFRSAQNEDFLRGRSIEAMAAASIYGACRCNGRPRTLN 189
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ ++ + + Y L L + + V PS F+ + L + ++
Sbjct: 190 EVTDSARVEDSRITNAYTTLNTELGLP-----AQPVTPSAFVPRLASEL--DVSDQLRQR 242
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
AR + + + TTG +PSG A LY + G + ++SD+ ++ ++ T+
Sbjct: 243 ARRLAEASEATGATTGVRPSGFAAACLYKAGREQGRRLTQSDVAEVANVSPVTV 296
>gi|407462994|ref|YP_006774311.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046616|gb|AFS81369.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 309
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 7/173 (4%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G SD I+ A FY A+ RN +GR + V A+CLY AC+ L + + I
Sbjct: 134 LGLSDTIIERASLFYRKAIKRNLIRGRTVKSVAAACLYAACKDLEHDRSLTEIAIQFVIK 193
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
E+ Y L + L + V+P + K T +L ++K A IL +
Sbjct: 194 RKEISRAYRILFKELGFT-----VNVVNPIKLISKITSKLEL--SEKTIRKATQILTVAQ 246
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
IT G+ P L + +Y + + G S++ + + + ++ R+ EF+
Sbjct: 247 DAGITVGKNPEILAASVIYAACVITGELKSQTQVAEAANTSTVSIRNRIREFK 299
>gi|429217323|ref|YP_007175313.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Caldisphaera lagunensis DSM
15908]
gi|429133852|gb|AFZ70864.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Caldisphaera lagunensis DSM
15908]
Length = 317
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
S+++ A + Y A + T+GR E V A+ LY ACR+ P + + + +L+I +
Sbjct: 143 SNKVREEASKMYRDATQKGLTRGRSIESVVAATLYAACRKLRIPCTIDEIAKHLSIKDND 202
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDW 132
+ + C L + D + ++P +F+++ L G V A IL +
Sbjct: 203 VKR-EIARCYRLLVRDLEVDIPVIEPELFVNRIVSAL--GLPDYVAVEAIKILREARGKG 259
Query: 133 ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 190
T G+ PSGL AA+Y++AL HGL+ ++ ++ + + E T+ R E + L+
Sbjct: 260 TTAGKDPSGLAAAAVYLAALKHGLRRTQKEVAHVAGVTEVTVRNRYKEIAGEAASKLS 317
>gi|432328477|ref|YP_007246621.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135186|gb|AGB04455.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 312
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 7/177 (3%)
Query: 5 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 64
+ A N+G ++ A Y AV N +GR E V A+ +Y ACR P L + S
Sbjct: 133 RMASNLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRTLEEIST 192
Query: 65 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 124
I E+G VY + + L + + P ++ +F +L G K A +I
Sbjct: 193 VTRIKKREIGRVYRIMSRTLKLN-----IYPTKPEDYIDRFCSKLKLSGEVKT--KAYEI 245
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ + I +GR P+G+ AA+Y++A+ G + ++ ++ + + E T+ R E
Sbjct: 246 IKMARERDIISGRGPTGVAAAAIYIAAILMGERRTQREVADVAGVTEVTIRNRYKEL 302
>gi|57642222|ref|YP_184700.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|14195235|sp|P58109.1|TF2B2_PYRKO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|12381905|dbj|BAB21262.1| Tk-TFB [Thermococcus kodakaraensis]
gi|57160546|dbj|BAD86476.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 306
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
VA Y AV + +GR E + ++ LY ACR + P L + ++ ++ E+G Y
Sbjct: 141 VAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIASVSKVSKKEIGRSYR 200
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRK 138
+ + L + L+ P ++ +F D L G + + A++IL + IT+G+
Sbjct: 201 FMARGLGLN-----LRPTSPIEYVDRFGDAL--GVSARTKKRAKEILNEAIKRGITSGKG 253
Query: 139 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
P+GL AALY++AL G K ++ ++ ++ H+ E T+ R E
Sbjct: 254 PTGLAAAALYIAALLEGEKKTQREVAEVAHVTEVTVRNRYKEL 296
>gi|452206769|ref|YP_007486891.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082869|emb|CCQ36145.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 11/182 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ +M +AL + E+ + A Y A+ N GR E V + LY A RQ P L
Sbjct: 144 IERMASALGLPEN--VRETASVIYRRALDDNLLPGRSIEGVSTAALYTAARQAGIPRSLD 201
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCD 119
+ ++ EL Y YI E N+ +K DP ++ +F L G + +V
Sbjct: 202 EIERVSRVDRMELTRTYR------YIIRELNLEVKPADPESYIPRFVSDL--GLSDEVER 253
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
AR+++ + + D + +G+ P GL AA+Y +AL K +++D+ ++ I E T+ R
Sbjct: 254 RARELIEAARGDGLLSGKSPVGLAAAAVYAAALLCNEKVTQNDVSEVADISEVTIRNRYK 313
Query: 180 EF 181
E
Sbjct: 314 EL 315
>gi|389846997|ref|YP_006349236.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244303|gb|AFK19249.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 276
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACRQ+ P L +
Sbjct: 100 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 157
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + LK VDP F+ +F L +++V A
Sbjct: 158 AEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--ELSEEVQAKAT 210
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 211 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 268
>gi|254166941|ref|ZP_04873795.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254168893|ref|ZP_04875733.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596150|ref|YP_003482846.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
gi|197622157|gb|EDY34732.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624551|gb|EDY37112.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289533937|gb|ADD08284.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
Length = 312
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 7/173 (4%)
Query: 9 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 68
N+G ++ A Y AV N +GR E V A+ +Y ACR P L + S I
Sbjct: 137 NLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRTLEEISTVTRI 196
Query: 69 NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 128
E+G VY + + L + + P ++ +F +L G +V A +I+
Sbjct: 197 KKREIGRVYRIMSRTLKLN-----IYPTKPEDYIDRFCSKLKLSG--EVKKKAYEIIKMA 249
Query: 129 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ I +GR P+G+ AA+Y++A+ G + ++ ++ ++ + E T+ R E
Sbjct: 250 RERDIISGRGPTGVAAAAIYIAAILMGERRTQREVAEVAGVTEVTIRNRYKEL 302
>gi|124486326|ref|YP_001030942.1| transcription initiation factor IIB [Methanocorpusculum labreanum
Z]
gi|124363867|gb|ABN07675.1| Transcription initiation factor IIB (TFIIB) [Methanocorpusculum
labreanum Z]
Length = 340
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + + + A Y AV +N +GR E V A+ LY ACRQ + P L +
Sbjct: 161 RMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEI 218
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ ++ E+G Y + + L + L P ++ +F L G +V A
Sbjct: 219 AEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPGDYVPRFCSGL--GLKGEVQSRAM 271
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+IL +T+GR P+G+ AA+Y+S++ G + ++ ++ + + E T+ R E
Sbjct: 272 EILKQAGERELTSGRGPTGVAAAAIYISSILSGERRTQREVADVAGVTEVTIRNRYKEL 330
>gi|432329785|ref|YP_007247928.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
gi|432136494|gb|AGB01421.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
Length = 336
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + + + A Y AV +N +GR E V A+ LY ACRQ S P L +
Sbjct: 157 RMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 214
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ ++ E+G Y +I+ E + L P ++ +F L G +V A
Sbjct: 215 AEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLTLKG--EVQSRA 266
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+ R E
Sbjct: 267 VEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKEL 326
>gi|435846604|ref|YP_007308854.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672872|gb|AGB37064.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 321
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR + P L +
Sbjct: 144 RMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEV 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
+ ++ E+G Y + Q L + ++ VDP ++ +F L LP ++V A
Sbjct: 202 AAVSRVDRMEIGRTYRYISQELGLE-----MEPVDPKKYVPRFCSELDLP---EEVQLKA 253
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y SAL K ++ ++ + + E T+ R E
Sbjct: 254 NEIITTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRNRYQE 312
>gi|448316805|ref|ZP_21506385.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445606975|gb|ELY60873.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 321
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR + P L +
Sbjct: 144 RMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEV 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
+ ++ E+G Y + Q L + ++ VDP ++ +F L LP ++V A
Sbjct: 202 AAVSRVDRMEIGRTYRYISQELGLE-----MEPVDPKKYVPRFCSELDLP---EEVQLKA 253
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y SAL K ++ ++ + + E T+ R E
Sbjct: 254 NEIITTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRNRYQE 312
>gi|448439368|ref|ZP_21588009.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691419|gb|ELZ43610.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 326
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 15/194 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V + LY A RQ
Sbjct: 136 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQA 195
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + S + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 196 GTPRSLDEISAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 248
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR +L + K I +G+ P GL AA+Y ++L K ++S++ + +I E T
Sbjct: 249 SDEAERRARSLLDTAKSQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSDVANISEVT 308
Query: 174 LMKRLIEFENTDSG 187
+ R E + G
Sbjct: 309 IRNRYHELLEAEDG 322
>gi|257052295|ref|YP_003130128.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|335441176|ref|ZP_08561897.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|256691058|gb|ACV11395.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|334888347|gb|EGM26646.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 321
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 144 RMASALGVPRS--VREVASVIYRRALDDDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 202 SEVSRVERKEIGRTYRYISQELGLE-----MEPVDPKKYVPRFCSELEL--SEEVQSKAN 254
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 255 EIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 312
>gi|327311923|ref|YP_004338820.1| transcription initiation factor IIB [Thermoproteus uzoniensis
768-20]
gi|326948402|gb|AEA13508.1| transcription initiation factor IIB [Thermoproteus uzoniensis
768-20]
Length = 317
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 11/182 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++K+A+ G V A Y A+ + +GR E + A+ LY+ACR P L
Sbjct: 135 LERLKSAM--GVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMLKTPRPLD 192
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGNKKVCD 119
+ + + E+ Y L + E NV + DP +++ + ++L G+ V
Sbjct: 193 ELIRFTKASRREVARCYRLLLR------ELNVRVPISDPVLYISRVAEQLKLTGD--VVK 244
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA DI+ K+ +T G+ P+GL AA+Y+++L HG ++ D + E T+ R
Sbjct: 245 TAIDIINKAKKAGLTAGKDPAGLAAAAVYIASLLHGDNRTQKDFAIAAGVTEVTVRNRYK 304
Query: 180 EF 181
E
Sbjct: 305 EL 306
>gi|424811965|ref|ZP_18237205.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756187|gb|EGQ39770.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
Length = 358
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 11/178 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ M + LN+ ES + R Y AV + +GR E + ++ LY+ R++ P L
Sbjct: 172 LNSMISNLNLPES--VHEEVARLYEKAVDQGLVRGRSMESIISALLYIVARKQGTPRTLD 229
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCD 119
+ S+ I E+G Y Y+A E + + P ++ +F +L G +V
Sbjct: 230 EISDASGIEKREIGRAYR------YVARELGLRILPAKPQDYVPRFAGKLQLSG--EVQA 281
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
AR+IL + + +G+ P+GL AALY++A+ G K ++ ++ +V + E T+ R
Sbjct: 282 RARNILEEAREKDLLSGKGPTGLAAAALYIAAVLEGEKRTQREVADVVGVTEVTIRNR 339
>gi|154151850|ref|YP_001405468.1| transcription initiation factor IIB [Methanoregula boonei 6A8]
gi|189029854|sp|A7IAR4.1|TF2B_METB6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|154000402|gb|ABS56825.1| Transcription factor TFIIB, cyclin-related [Methanoregula boonei
6A8]
Length = 334
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + + + A Y AV +N +GR E V A+ LY ACRQ S P L +
Sbjct: 155 RMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 212
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ ++ E+G Y +I+ E + L P ++ +F L G +V A
Sbjct: 213 AEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLTLKG--EVQSRA 264
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+ R E
Sbjct: 265 VEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKEL 324
>gi|433441074|ref|ZP_20408566.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
gi|432187300|gb|ELK44608.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
Length = 208
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACRQ+ P L +
Sbjct: 32 RMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEV 89
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + LK VDP F+ +F L +++V A
Sbjct: 90 AEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--DLSEEVQAKAT 142
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 143 EIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 200
>gi|397779601|ref|YP_006544074.1| transcription initiation factor IIB [Methanoculleus bourgensis MS2]
gi|396938103|emb|CCJ35358.1| Transcription initiation factor IIB Short=TFIIB [Methanoculleus
bourgensis MS2]
Length = 337
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 91/186 (48%), Gaps = 12/186 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + + + A Y AV +N +GR E V A+ LY ACRQ S P L +
Sbjct: 158 RMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEV 215
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ ++ E+G Y +I+ E + L P ++ +F L G +V A
Sbjct: 216 AEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLNLKG--EVQSRA 267
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+ R E
Sbjct: 268 VEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKEL 327
Query: 182 -ENTDS 186
E DS
Sbjct: 328 AEKLDS 333
>gi|88603722|ref|YP_503900.1| transcription initiation factor IIB [Methanospirillum hungatei
JF-1]
gi|88189184|gb|ABD42181.1| Transcription initiation factor IIB (TFIIB) [Methanospirillum
hungatei JF-1]
Length = 337
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL G + A Y AV +N +GR E V A+ LY ACRQ S P L +
Sbjct: 158 RMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ ++ E+G Y +I+ E + L P ++ +F L G +V A
Sbjct: 216 AEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLQLKG--EVQSRA 267
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+ R E
Sbjct: 268 VEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKEL 327
>gi|448476740|ref|ZP_21603675.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445815191|gb|EMA65123.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 307
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y A+ + +GR E V + LY ACR++ P L + S+ + E+G Y + Q
Sbjct: 148 IYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISDVSRVERKEIGRTYRYISQ 207
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 142
L + ++ VDP ++ +F+ L +++V A +I+ + + +G+ P+G
Sbjct: 208 ELGLE-----MRPVDPKKYVPRFSSEL--DLSEEVQSKANEIIETTAEQGLLSGKSPTGF 260
Query: 143 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 261 AAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 298
>gi|268326216|emb|CBH39804.1| transcription initiation factor IIB [uncultured archaeon]
Length = 302
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M ALN+ ++ Y A R+ KGR E++ ++ LY+ CRQ P L +
Sbjct: 108 RMACALNLPR--DLRETTSLLYRKAAKRSLIKGRSIEELASAMLYITCRQYGIPRTLKEI 165
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + + ++ Y+ L L I L DP+ ++ +F L G + + A
Sbjct: 166 AAVSRMPLKKIRRAYIFLLHKLEIK-----LAPADPACYIPRFCSEL--GLRDVIRERAI 218
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+I++ K G P+G AA+Y+++L G D+ K+ T+ R E
Sbjct: 219 EIVSEDKETIAAKGWTPTGTAAAAIYLASLLSGESVEVKDMAKVAGTTPVTIQNRYKEL 277
>gi|374723591|gb|EHR75671.1| transcription initiation factor TFIIB [uncultured marine group II
euryarchaeote]
Length = 308
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 24 YGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 83
Y AV + +GR E V A+ LY ACRQ P L + E+G Y + +
Sbjct: 148 YKKAVDKRLIRGRSIEGVAAASLYAACRQCGVPRTLDEIGQASRTGRKEIGRTYRFMVRE 207
Query: 84 LYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLC 143
L + + P ++ +F L G + +V A +++ + + +T+GR P+G+
Sbjct: 208 LKMK-----IMPTGPEDYISRFCSGL--GLDAEVEAKAYELIKAAQEKELTSGRGPTGIA 260
Query: 144 GAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ +Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 261 ASIIYIASVLCGKRRTQREVAEVAGVTEVTIRNRYKEL 298
>gi|329765337|ref|ZP_08256917.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329138243|gb|EGG42499.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 303
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 15/184 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R ++ ALN + +D +V A Y A+ + +GR + + A+CLY +CR
Sbjct: 117 RNLRQALNEMDKLKDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNT 176
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L D + +NI ++ Y + + L + + VDP + + +
Sbjct: 177 ETPRTLDDVAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGVSRIAS--IAEL 229
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
++K A IL K+ + G+ P G+ AALY++ ++ G S+ DI + E T
Sbjct: 230 SEKSKRKAVAILEQAKKIGMVAGKDPMGIAAAALYLACISTGEIKSQKDISIASGVTEVT 289
Query: 174 LMKR 177
+ R
Sbjct: 290 IRNR 293
>gi|448377625|ref|ZP_21560321.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
gi|445655569|gb|ELZ08414.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
Length = 323
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY A RQ P L +
Sbjct: 144 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S ++ EL Y + + L + +K DP ++ +F L +++ T+R
Sbjct: 202 SQVSRVDRMELTRTYRYIVRELSLE-----VKPADPEHYVPRFISDL--DLSEETERTSR 254
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
++L S + D + +G+ P GL AA+Y +AL K +++++ ++ +I E T+ R E
Sbjct: 255 ELLESARGDGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVANISEVTIRNRYKEL 313
>gi|219851004|ref|YP_002465436.1| transcription initiation factor IIB [Methanosphaerula palustris
E1-9c]
gi|254784087|sp|B8GJQ9.1|TF2B_METPE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|219545263|gb|ACL15713.1| Transcription factor TFIIB cyclin-related [Methanosphaerula
palustris E1-9c]
Length = 334
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL G + A Y AV +N +GR E V A+ LY ACRQ S P L +
Sbjct: 155 RMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 212
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ ++ E+G Y + + L + L P ++ +F L G +V A
Sbjct: 213 AEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPIDYVPRFCSGLTLKG--EVQSRAV 265
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+ R E
Sbjct: 266 EILRQAAERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKEL 324
>gi|161528495|ref|YP_001582321.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339796|gb|ABX12883.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 315
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 15/184 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R ++ ALN + +D ++ A Y A+ + +GR + + A+CLY +CR
Sbjct: 129 RNLRQALNEMDKLKDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNT 188
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L D + +NI ++ Y + + L + + VDP + + +
Sbjct: 189 ETPRTLDDVAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGVSRIAS--IAEL 241
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
++K A IL K+ + G+ P G+ AALY++ ++ G S+ DI + E T
Sbjct: 242 SEKSKRKAIAILNEAKKMGVVAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVT 301
Query: 174 LMKR 177
+ R
Sbjct: 302 IRNR 305
>gi|76803041|ref|YP_331136.1| transcription initiation factor TFB 6 [Natronomonas pharaonis DSM
2160]
gi|76558906|emb|CAI50502.2| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 329
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E + LY ACRQ+S P L +
Sbjct: 153 RMASALGVPRS--VREVASVTYRRALDEDLIRGRSIEGAATATLYAACRQESIPRSLDEV 210
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y L Q L + +K DP ++ +F L ++ V R
Sbjct: 211 AEVARVEQKEIGRTYRYLSQELGLE-----IKPADPKEYVPRFCSEL--ALSEAVEQKTR 263
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+ R E
Sbjct: 264 EIIDVTAEEGMLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQE 321
>gi|433639108|ref|YP_007284868.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|433290912|gb|AGB16735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
Length = 323
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY A RQ P L +
Sbjct: 144 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S ++ EL Y + + L + +K DP ++ +F L +++ T+R
Sbjct: 202 SQVSRVDRMELTRTYRYIVRELSLE-----VKPADPEHYVPRFISDL--DLSEETERTSR 254
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
++L S + D + +G+ P GL AA+Y +AL K +++++ ++ +I E T+ R E
Sbjct: 255 ELLESARGDGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVANISEVTIRNRYKEL 313
>gi|386874734|ref|ZP_10116960.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807357|gb|EIJ66750.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 306
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 7/169 (4%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G D +V A Y V+ T+GR + ++ LY ACR+ + P L D +N N+
Sbjct: 134 LGVPDNVVESAAYIYRKVVSAKLTRGRTMTSLISASLYAACRENNIPRTLDDIANAGNVE 193
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
L + + L + L Q D S F+ K ++ + +K A +IL +
Sbjct: 194 RRILSRDLRTIIKKLGLN-----LNQYDTSSFISKISNNM--DLKEKTKRDAFEILKRCE 246
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
++ IT G+ P A+LY+S + +G K S+ + + T+ R+
Sbjct: 247 KEQITAGKHPVAQAAASLYISCIMNGEKISQKKFSAESGVSDVTIRNRV 295
>gi|291333316|gb|ADD93023.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S04-C246]
Length = 308
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 85/179 (47%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M + L++ +S I A Y AV +GR E V A+ LY ACRQ S P L +
Sbjct: 129 RMASRLDLPKS--IREAAAVNYKKAVEARLIRGRSIEGVAAASLYAACRQCSNPRTLDEI 186
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
E+G Y + + L + + P ++ +F L + +V A
Sbjct: 187 GEASRTGRKEIGRTYRFMVRELKMK-----IPPTKPEDYIPRFCSGL--DLDAEVQAKAY 239
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+++A+ + +T+GR P+G+ + +Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 240 ELIAAAQERELTSGRGPTGIAASIIYIASVLCGKRRTQREVAEVAGVTEVTIRNRYKEL 298
>gi|448370421|ref|ZP_21556593.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445649168|gb|ELZ02110.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 323
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR + P L +
Sbjct: 146 RMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEV 203
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
+ +N E+G Y + Q L + ++ V+P ++ +F L LP ++V A
Sbjct: 204 AAVSRVNRMEIGRTYRYISQELGLE-----MEPVNPKKYVPRFCSELDLP---EEVQAKA 255
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y SAL K ++ ++ + + E T+ R E
Sbjct: 256 NEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQKEVADVAQVTEVTIRNRYQE 314
>gi|448529404|ref|ZP_21620542.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445709166|gb|ELZ60999.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 324
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 16/197 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V S LY A RQ
Sbjct: 134 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQA 193
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + + + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 194 GTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 246
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T
Sbjct: 247 SDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVT 306
Query: 174 LMKRLIE-FENTDSGSL 189
+ R E E DS +L
Sbjct: 307 IRNRYHELLEAEDSVAL 323
>gi|448448980|ref|ZP_21591478.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445814072|gb|EMA64044.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 325
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 18/194 (9%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V + LY A RQ
Sbjct: 135 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQA 194
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + + + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 195 GTPRSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 247
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T
Sbjct: 248 SDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVT 307
Query: 174 LMKR---LIEFENT 184
+ R L+E E++
Sbjct: 308 IRNRYHELLEAEDS 321
>gi|374630349|ref|ZP_09702734.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
gi|373908462|gb|EHQ36566.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
Length = 335
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 9/173 (5%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G + A Y AV +N +GR E V A+ LY ACRQ + P L + + ++
Sbjct: 161 LGLPRNVRETAAVVYRDAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIAEVSRVS 220
Query: 70 VYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 128
E+G Y +I+ E + L P ++ +F L G +V A +IL
Sbjct: 221 RKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLTLKG--EVQSRAVEILRQA 272
Query: 129 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+ R E
Sbjct: 273 GEKELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKEL 325
>gi|407462627|ref|YP_006773944.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046249|gb|AFS81002.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 303
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 15/184 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R ++ ALN + +D ++ A Y A+ + +GR + + A+CLY +CR
Sbjct: 117 RNLRQALNEMDKLKDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNT 176
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L D + +NI ++ Y + + L + + VDP + + +
Sbjct: 177 ETPRTLDDVAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGVSRIAS--IAEL 229
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
++K A IL K+ + G+ P G+ AALY++ ++ G S+ DI + E T
Sbjct: 230 SEKSKRKAIAILNEAKKMGVVAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVT 289
Query: 174 LMKR 177
+ R
Sbjct: 290 IRNR 293
>gi|169863349|ref|XP_001838296.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|116500589|gb|EAU83484.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 340
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 9/170 (5%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
I +AK+ Y +G+ E V A+C+++ACRQ P D + +++ LG
Sbjct: 152 ISDIAKQLYKRTDEEKLLRGKPLEAVIAACIFIACRQAHVPRSFKDICSLTHVSKKMLGQ 211
Query: 76 VYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWIT 134
Y L + + P FL ++ + L LP + +C RD++ + + I
Sbjct: 212 CYKVLERAF---TQVGAAPSSGPEGFLVRYCNYLDLPPNVQGIC---RDVIVAAREHGIA 265
Query: 135 TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL--MKRLIEFE 182
R P + G A+Y + G + +I ++ + E T+ + RL FE
Sbjct: 266 DSRSPLSIAGGAIYFCCMLLGHTRTLREISQVAGVTETTIQSVYRLYYFE 315
>gi|222479752|ref|YP_002565989.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452654|gb|ACM56919.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 326
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 15/195 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V S LY A RQ
Sbjct: 136 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQA 195
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + + + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 196 GTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 248
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR +L + K + +G+ P GL AA+Y ++L K ++S++ + +I E T
Sbjct: 249 SDEAERRARSLLNTAKEQGLHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSDVANISEVT 308
Query: 174 LMKRLIEFENTDSGS 188
+ R E + G+
Sbjct: 309 IRNRYHELLEAEDGA 323
>gi|448502246|ref|ZP_21612519.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445694402|gb|ELZ46531.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 325
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 18/194 (9%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V + LY A RQ
Sbjct: 135 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQA 194
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + + + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 195 GTPRSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 247
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T
Sbjct: 248 SDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVT 307
Query: 174 LMKR---LIEFENT 184
+ R L+E E++
Sbjct: 308 IRNRYHELLEAEDS 321
>gi|393796911|ref|ZP_10380275.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 303
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 15/184 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R ++ ALN + +D +V A Y A+ + +GR + + A+CLY +CR
Sbjct: 117 RNLRQALNEMDKLKDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNT 176
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L D + +NI ++ Y + + L + + VDP + + +
Sbjct: 177 ETPRTLDDVAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGVSRIAS--IAEL 229
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
++K A IL K+ + G+ P G+ AALY++ ++ G S+ DI + E T
Sbjct: 230 SEKSKRKAVVILEQAKKIGMVAGKDPMGIAAAALYLACISTGEIKSQKDISIASGVTEVT 289
Query: 174 LMKR 177
+ R
Sbjct: 290 IRNR 293
>gi|257051172|ref|YP_003129005.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256689935|gb|ACV10272.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ N GR E V + LY A RQ P L +
Sbjct: 144 RMASALGLPEN--VRETASVIYRRALDENLLPGRSIEGVATASLYAAARQAGNPRSLDEI 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
N + E+ Y + + L + +K DP+ ++ +F L ++ AR
Sbjct: 202 DNVSRVEKDEVARTYRYVVRELKLE-----VKPADPTSYVPRFASDLEL--TEEAERHAR 254
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
D+L + K++ + +G+ P GL AA+Y ++L K +++++ ++ +I E T+ R E
Sbjct: 255 DLLENAKQEGVHSGKSPVGLAAAAIYAASLLANEKVTQNEVSEVANISEVTIRNRYHEL 313
>gi|126178423|ref|YP_001046388.1| transcription initiation factor IIB [Methanoculleus marisnigri JR1]
gi|189029857|sp|A3CSQ6.1|TF2B_METMJ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|125861217|gb|ABN56406.1| Transcription initiation factor IIB (TFIIB) [Methanoculleus
marisnigri JR1]
Length = 337
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + + + A Y AV +N +GR E V A+ LY ACRQ S P L +
Sbjct: 158 RMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ ++ E+G Y +I+ E + L P ++ +F L G +V A
Sbjct: 216 AEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLNLKG--EVQSRA 267
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+ R E
Sbjct: 268 VEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKEL 327
>gi|448732994|ref|ZP_21715240.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
gi|445803327|gb|EMA53624.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
Length = 323
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 16/189 (8%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ +M +AL + +S + A Y A+ N GR E V + L++A RQ + P L
Sbjct: 140 IERMSSALGLPKS--VRETAGVIYRRALEENLLPGRSVEGVSTAALHIASRQANIPRSLD 197
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCD 119
+ I + Y Y+A E + L DP +L +F L + +V
Sbjct: 198 TLTEVSRIGKLPITRTYQ------YVARELEINLPPADPLEYLPRFVSAL--DRSDEVER 249
Query: 120 TARDILASMKRDWIT--TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
+R++L ++ D + +G+ P GL AA+Y +L K ++ + ++ I E T+ R
Sbjct: 250 RSRELLETVSEDEPSYLSGKNPVGLAAAAVYAGSLLCNEKVTQKAVGEVADISEVTIRNR 309
Query: 178 ---LIEFEN 183
L+EF++
Sbjct: 310 YKELLEFQD 318
>gi|386875622|ref|ZP_10117781.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806378|gb|EIJ65838.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 303
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 15/184 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R ++ ALN + +D +V A Y A+ + +GR + + A+CLY +CR
Sbjct: 117 RNLRQALNEMDKLKDKLALTDSVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNT 176
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L D + +NI ++ Y + + L + + VDP + + +
Sbjct: 177 ETPRTLDDIAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGVSRIAS--IAEL 229
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
++K A IL K + G+ P G+ AALY++ ++ G S+ DI + E T
Sbjct: 230 SEKSKRKAIVILNQAKEIGMVAGKDPMGIAAAALYLACISTGETKSQKDISIASGVTEVT 289
Query: 174 LMKR 177
+ R
Sbjct: 290 IRNR 293
>gi|448681685|ref|ZP_21691776.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445767555|gb|EMA18658.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 324
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 146 RMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+ Y + + L + ++ DP ++ +F L +++V AR
Sbjct: 204 AGVSRVEKDEIARTYRYVVRELSLE-----IQPADPESYVPRFASDL--DLSEEVERRAR 256
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+L + K++ + +G+ P GL AA+Y ++L K ++S++ ++ +I E T+ R E
Sbjct: 257 QLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSEVSEVANISEVTIRNRYHEL 315
>gi|448322082|ref|ZP_21511555.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602070|gb|ELY56050.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR + P L +
Sbjct: 144 RMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEV 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
+ ++ E+G Y + Q L + ++ VDP ++ +F L LP ++V A
Sbjct: 202 AAVSRVDRMEIGRTYRYISQELGLE-----MEPVDPKKYVPRFCSELDLP---EEVQLKA 253
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y SAL K ++ ++ + + E T+ R E
Sbjct: 254 NEIINTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRNRYQE 312
>gi|407465789|ref|YP_006776671.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048977|gb|AFS83729.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 7/175 (4%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G SD +V A Y V+ T+GR + ++ LY ACR+ + P L D ++ N+
Sbjct: 134 LGISDNVVENAAYIYRKVVSAKLTRGRTMASLISASLYAACRENNIPRTLDDIADAGNVE 193
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
L + + L + L Q D + F+ K ++ + +K A +IL +
Sbjct: 194 RRILSRDLRTIIKKLGMN-----LNQYDTTSFISKISNNM--NLKEKTKRDAFEILRRCE 246
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184
++ IT G+ P A+LY+S + +G K S+ + + T+ R I + T
Sbjct: 247 KEQITAGKHPVAQAAASLYISCIMNGEKISQKKFSVESGVSDVTIRNRTILIKKT 301
>gi|134046665|ref|YP_001098150.1| transcription initiation factor IIB [Methanococcus maripaludis C5]
gi|189029855|sp|A4G0F2.1|TF2B_METM5 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|132664290|gb|ABO35936.1| Transcription initiation factor IIB (TFIIB) [Methanococcus
maripaludis C5]
Length = 339
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTY----- 232
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 140
+I+ E N+ L +P ++ +F L LPG +V A IL +T+ R P+
Sbjct: 233 -RFISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSSRGPT 288
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|448423775|ref|ZP_21582108.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445683032|gb|ELZ35437.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
Length = 396
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 18/194 (9%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V + LY A RQ
Sbjct: 206 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQA 265
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + + + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 266 GTPRSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 318
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T
Sbjct: 319 SDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVT 378
Query: 174 LMKR---LIEFENT 184
+ R L+E E++
Sbjct: 379 IRNRYHELLEAEDS 392
>gi|435849538|ref|YP_007311726.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433675746|gb|AGB39936.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 318
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 14/180 (7%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + + + V Y A+ + +GR E V + LY CRQ+ P L +
Sbjct: 143 RMASALGVPRA--VREVTSVIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLEEI 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDT 120
+ I E+ Y YI++E + L+ +DP ++ +FT +L LP ++V
Sbjct: 201 TEVSRIERIEISRTYR------YISNELGLELRPIDPKQYVPRFTSKLELP---QEVETK 251
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +I+ D + +GR PSG AA+Y +AL K ++ ++ + + E T+ R E
Sbjct: 252 ANEIIDETA-DPLLSGRGPSGFAAAAIYAAALLCNEKRTQREVADVAQVTEVTIRNRYQE 310
>gi|344212211|ref|YP_004796531.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448671788|ref|ZP_21687593.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343783566|gb|AEM57543.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445764924|gb|EMA16067.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 324
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 146 RMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+ Y + + L + ++ DP ++ +F L +++V AR
Sbjct: 204 AGVSRVEKDEIARTYRYVVRELSLE-----IQPADPESYVPRFASDL--DLSEEVERRAR 256
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+L + K++ + +G+ P GL AA+Y ++L K ++S++ ++ +I E T+ R E
Sbjct: 257 QLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSEVSEVANISEVTIRNRYHEL 315
>gi|291333532|gb|ADD93228.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S08-C54]
Length = 311
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 12/189 (6%)
Query: 1 MRQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 59
MR+M+ A N+ I A Y A+ GR E V + LY ACRQ+ P L
Sbjct: 128 MREMQAVATNLKLPRRIQETAAFIYRRAIQEQSLSGRAIEMVACAALYAACRQEGVPRTL 187
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 119
+ S + + E+ Y QV+ A + + + + P +L + +L + KV
Sbjct: 188 TEISRHSRYSRKEISRTY----QVMVKALKMHSMPPL-PEDYLPRICSKL--ELSPKVEG 240
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR-- 177
ARD+L + + D T P L AA+Y++++ + + + D+ + + E T+ R
Sbjct: 241 AARDLLRAAQ-DVPLTNSVPISLAAAAVYIASIVNNERRKQKDVARAADLTEVTIRSRYK 299
Query: 178 -LIEFENTD 185
+ +F N D
Sbjct: 300 EMAQFLNID 308
>gi|238606146|ref|XP_002396638.1| hypothetical protein MPER_03085 [Moniliophthora perniciosa FA553]
gi|215469580|gb|EEB97568.1| hypothetical protein MPER_03085 [Moniliophthora perniciosa FA553]
Length = 136
Score = 57.4 bits (137), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 2 RQMKNALNIGESDEIV-HVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLL 59
R+++ N+ E+V A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++L
Sbjct: 69 RKIQTIANVLRLSEVVCMAATRLYTLAVEHKFTKGRKSLNVVAVCLYVACRQKETRNYML 128
Query: 60 IDFSNYL 66
IDFS+ L
Sbjct: 129 IDFSDLL 135
>gi|448288563|ref|ZP_21479761.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445568948|gb|ELY23523.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 318
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY A RQ P L +
Sbjct: 140 RMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDEL 197
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
++ E+ Y Y+ E N+ ++ DP ++ +F L G N + A
Sbjct: 198 ETVSRVDKDEISRTYR------YVVRELNLEIEPADPEQYVPRFASEL--GLNDESERHA 249
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T+ R E
Sbjct: 250 RQLLRTAKEQGIHSGKSPVGLAAAAIYAASLLANEKVTQSEVSEVANISEVTIRNRYHEL 309
>gi|448308419|ref|ZP_21498296.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445593707|gb|ELY47876.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 321
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A++ + +GR E V S LY ACR + P L +
Sbjct: 144 RMASALGVPRS--VREVASVLYRRALSEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEV 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 202 AAVSRVERMEIGRTYRYISQELSLE-----MEPVDPKKYVPRFCSEL--DLSEEVQAKAN 254
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y SAL K ++ ++ + + E T+ R E
Sbjct: 255 EIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRNRYQE 312
>gi|408403989|ref|YP_006861972.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364585|gb|AFU58315.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 285
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
++K+ L +G D ++ A Y A+ + +GR + A+ LY ACR P L D
Sbjct: 110 RLKDKLAVG--DAVIEKAAYVYRKALEKGLVRGRSISALVAAALYAACRDTETPRTLKDI 167
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+N NI ++ Y L + L + + VDP + + + G ++K A
Sbjct: 168 ANASNIKKKDVARCYRLLIRELDLK-----MPVVDPVKCVARIASK--AGLSEKTKRKAL 220
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
+IL + I+ G+ P GL AALYV+ + +G ++ D+ + + E T+ R
Sbjct: 221 EILKKAEEGKISAGKDPMGLAAAALYVACVMNGENKTQKDVAEAAGVTEVTIRNR 275
>gi|448473771|ref|ZP_21601913.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445819283|gb|EMA69132.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 353
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 15/188 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V + LY A RQ
Sbjct: 163 RNLKQALGEVDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQA 222
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + + + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 223 GTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 275
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T
Sbjct: 276 SDEAERRARSLLDTAKAQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVT 335
Query: 174 LMKRLIEF 181
+ R E
Sbjct: 336 IRNRYHEL 343
>gi|448567682|ref|ZP_21637607.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445711680|gb|ELZ63470.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 342
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 17/200 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V + +Y A RQ
Sbjct: 146 RNLKQALGEVERMGSALGLPDTVRETASVIYRRALDDDLLPGRSIEGVATAAIYAAARQA 205
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + ++ EL Y + + L + +K DP+ +L +F L
Sbjct: 206 GVPRSLDEVRRVSRVDKMELTRTYRYVSRELGLD-----MKPADPAQYLPRFVSEL--DV 258
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
V AR +L + KR I +G+ P GL AA+Y L + ++S++ ++ I E T
Sbjct: 259 TDDVERRARSLLDNAKRQGIHSGKSPVGLAAAAIYAGGLLADEELTQSEVSEVTDISEVT 318
Query: 174 LMKRLIE-FENTD-SGSLTI 191
+ R E E T SG +T+
Sbjct: 319 IRNRYRELLEATQKSGEMTV 338
>gi|448431679|ref|ZP_21585190.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445687455|gb|ELZ39738.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 238
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 18/194 (9%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V S LY A RQ
Sbjct: 48 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQA 107
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + + + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 108 GTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 160
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T
Sbjct: 161 SDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVT 220
Query: 174 LMKR---LIEFENT 184
+ R L+E E++
Sbjct: 221 IRNRYHELLEAEDS 234
>gi|322788519|gb|EFZ14161.1| hypothetical protein SINV_13195 [Solenopsis invicta]
Length = 257
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 28/121 (23%)
Query: 343 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 402
DIDD E+D Y+ +E+E K +W ++N +YL +Q KE K +
Sbjct: 9 DIDDEELDSYILSEKESQSKSALWNKVNADYLIQQKEKEEKRLKEKEEGKP--------- 59
Query: 403 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 462
E++++R K+ PA TA EA +ML +K++SSKINY+VL
Sbjct: 60 -------------------ERKRRRTTSKKHRTPANTAGEAIEKMLQEKKISSKINYEVL 100
Query: 463 E 463
+
Sbjct: 101 K 101
>gi|313126970|ref|YP_004037240.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293335|gb|ADQ67795.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY A RQ P L +
Sbjct: 149 RMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDEL 206
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
++ E+ Y Y+ E N+ ++ DP ++ +F L G N + A
Sbjct: 207 ETVSRVDKDEISRTYR------YVVRELNLEIEPADPEQYVPRFASEL--GLNDESERHA 258
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T+ R E
Sbjct: 259 RQLLRTAKEQGIHSGKSPVGLAAAAIYAASLLANEKVTQSEVSEVANISEVTIRNRYHEL 318
>gi|448571794|ref|ZP_21639968.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445721761|gb|ELZ73427.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 318
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 15/188 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V S LY A R
Sbjct: 128 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMA 187
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + ++ + E+ Y + + L + +K DP ++ +F L G
Sbjct: 188 GTPRSLDEITSVSRVEKDEIARTYRYVVRELSLE-----IKPADPEQYVPRFASEL--GL 240
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +I E T
Sbjct: 241 SDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVT 300
Query: 174 LMKRLIEF 181
+ R E
Sbjct: 301 IRNRYHEL 308
>gi|448343629|ref|ZP_21532552.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445622685|gb|ELY76131.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 329
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 15/195 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D++ A Y A+ + GR E V + LY A RQ
Sbjct: 140 RNLKQALGEIDRMASALGLPDDVRETASVIYRRALEDDLLPGRSIEGVATASLYAAARQA 199
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + S ++ E+ Y + + L + ++ DP ++ +F L
Sbjct: 200 GTPRSLDEISAVSRVDKAEVARTYRYVVRELGLE-----VQPADPESYVPRFASDLDLAD 254
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
++ ARD+L + K I +G+ P GL AA+Y +AL + +++D+ ++ I E T
Sbjct: 255 ETEL--RARDLLTTAKEKGIHSGKSPVGLAAAAVYAAALLTNEQVTQNDVSEVASISEVT 312
Query: 174 LMKRLIEFENTDSGS 188
+ R E + G+
Sbjct: 313 IRNRYHELLEAEDGA 327
>gi|307354313|ref|YP_003895364.1| transcription factor TFIIB cyclin-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307157546|gb|ADN36926.1| Transcription factor TFIIB cyclin-related protein [Methanoplanus
petrolearius DSM 11571]
Length = 335
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL G + A Y AV +N +GR E V A+ LY ACRQ S P L +
Sbjct: 156 RMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 213
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ ++ E+G Y +I+ E + L P ++ +F L G +V A
Sbjct: 214 AEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLNLKG--EVQSRA 265
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+ R E
Sbjct: 266 VEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKEL 325
>gi|289937651|ref|YP_003482253.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|448283863|ref|ZP_21475128.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|289533342|gb|ADD07691.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445571958|gb|ELY26500.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
Length = 321
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +A+ + S + VA Y A+ + +GR E V S LY ACR + P L +
Sbjct: 144 RMASAMGVPRS--VREVASVLYRRALEEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEI 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDT 120
+ + E+G Y YI+ E + ++ VDP ++ +F L LP +V
Sbjct: 202 AAVSRVERMEIGRTY------RYISKELGLEMQPVDPKKYVPRFCSELELP---DEVQSK 252
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +I+ + + +G+ P+G AA+Y +AL K ++ ++ + + E T+ R E
Sbjct: 253 ANEIIDTTAEKGMLSGKSPTGYAAAAIYAAALLCNKKKTQREVADVAQVTEVTIRNRYQE 312
>gi|448479384|ref|ZP_21604236.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445822662|gb|EMA72426.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 385
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G D + A Y A+ + GR E V + LY A RQ P L + + +
Sbjct: 211 LGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAGVSRVE 270
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
E+ Y + + L + ++ DP ++ +F L G + + AR +L + K
Sbjct: 271 KDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GLSDEAERRARSLLDTAK 323
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR---LIEFENT 184
I +G+ P GL AA+Y ++L K ++S++ ++ +I E T+ R L+E E++
Sbjct: 324 EQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRYHELLEAEDS 381
>gi|448360606|ref|ZP_21549237.1| Transcription factor TFIIB cyclin-related protein [Natrialba
asiatica DSM 12278]
gi|445653219|gb|ELZ06091.1| Transcription factor TFIIB cyclin-related protein [Natrialba
asiatica DSM 12278]
Length = 271
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR + P L +
Sbjct: 94 RMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEV 151
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
+ +N E+G Y + Q L + ++ V+P ++ +F L LP ++V A
Sbjct: 152 AAVSRVNRMEIGRTYRYISQELGLE-----MEPVNPKKYVPRFCSELDLP---EEVQAKA 203
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y SAL K ++ ++ + + E T+ R E
Sbjct: 204 NEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQKEVADVAQVTEVTIRNRYQE 262
>gi|448352384|ref|ZP_21541172.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
gi|445643145|gb|ELY96198.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
Length = 321
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y + + +GR E V S LY ACR + P L +
Sbjct: 144 RMASALGVPRS--VREVASVLYRRTLDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEI 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDT 120
+ ++ E+G Y YI+ E ++ ++ VDP ++ +F L LP +V
Sbjct: 202 AAVSRVDRMEIGRTYR------YISKELSLEMQPVDPKKYVPRFCSELELP---DEVQSK 252
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +I+ + + +G+ P+G AA+Y +AL K ++ ++ + + E T+ R E
Sbjct: 253 ANEIIDTTAEKGLLSGKSPTGYAAAAIYAAALLCNKKKTQREVADVAQVTEVTIRNRYQE 312
>gi|448561557|ref|ZP_21634841.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445720739|gb|ELZ72411.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 318
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 15/188 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V S LY A R
Sbjct: 128 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMA 187
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + ++ + E+ Y + + L + +K DP ++ +F L G
Sbjct: 188 DTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASEL--GL 240
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +I E T
Sbjct: 241 SDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVT 300
Query: 174 LMKRLIEF 181
+ R E
Sbjct: 301 IRNRYHEL 308
>gi|435846710|ref|YP_007308960.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672978|gb|AGB37170.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 12/188 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY A RQ P L +
Sbjct: 146 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 203
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S ++ EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 204 SAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 255
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE- 180
R++L S + + + +G+ P GL AA+Y +AL K +++D+ ++ I E T+ R E
Sbjct: 256 RELLDSAREEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRYKEL 315
Query: 181 FENTDSGS 188
E +DS +
Sbjct: 316 LEASDSAA 323
>gi|355572234|ref|ZP_09043416.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
gi|354824950|gb|EHF09189.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
Length = 338
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + + + A Y AV +N +GR E V A+ LY ACRQ S P L +
Sbjct: 159 RMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 216
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ ++ E+G Y + + L + L P ++ +F L G +V A
Sbjct: 217 AEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPIDYVPRFCSGLNLKG--EVQSRAV 269
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+ R E
Sbjct: 270 EILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKEL 328
>gi|424813973|ref|ZP_18239151.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
gi|339757589|gb|EGQ42846.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
Length = 360
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 95/199 (47%), Gaps = 15/199 (7%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ M + LN+ ES + R Y +V + +GR E + ++ +Y+ R++ P L
Sbjct: 174 LNSMISNLNLPES--VHEETARLYEKSVDQGLVRGRSMESIISAIIYIVARKQGTPRTLD 231
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCD 119
+ S+ I E+G Y Y+A E + + P ++ +F +L G +V
Sbjct: 232 EISDASGIEKREIGRAYR------YVARELGLRILPAKPQDYVPRFAGKLQLSG--EVQA 283
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
AR IL + + +G+ P+GL AALY++A+ G K ++ ++ +V + E T+ R
Sbjct: 284 RARQILKEARERDLLSGKGPTGLAAAALYIAAVLEGEKRTQREVADVVGVTEVTIRNRYK 343
Query: 180 EFENTDSGSLTIEDFMARK 198
E + L +ED + K
Sbjct: 344 EL----AEKLGLEDELEEK 358
>gi|407465001|ref|YP_006775883.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048189|gb|AFS82941.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 303
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 15/184 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R ++ ALN + +D ++ A Y A+ + +GR + + A+CLY +CR
Sbjct: 117 RNLRQALNEMDKLKDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNT 176
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L D + +NI ++ Y + + L + + VDP + + +
Sbjct: 177 ETPRTLDDIAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGVSRIAS--IAEL 229
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
++K A IL K + G+ P G+ AALY++ ++ G S+ DI + E T
Sbjct: 230 SEKSKRKAIAILNQAKEIGMVAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVT 289
Query: 174 LMKR 177
+ R
Sbjct: 290 IRNR 293
>gi|448348263|ref|ZP_21537115.1| Transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445643361|gb|ELY96413.1| Transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 271
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR + P L +
Sbjct: 94 RMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEV 151
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
+ +N E+G Y + Q L + ++ V+P ++ +F L LP ++V A
Sbjct: 152 AAVSRVNRMEIGRTYRYISQELGLE-----MEPVNPKKYVPRFCSELDLP---EEVQAKA 203
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y SAL K ++ ++ + + E T+ R E
Sbjct: 204 NEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQKEVADVAQVTEVTIRNRYQE 262
>gi|222476043|ref|YP_002564564.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|345007208|ref|YP_004810060.1| Cyclin domain-containing protein [halophilic archaeon DL31]
gi|354612343|ref|ZP_09030294.1| Transcription factor TFIIB cyclin-related protein [Halobacterium
sp. DL1]
gi|222454414|gb|ACM58678.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|344322834|gb|AEN07687.1| Cyclin domain protein [halophilic archaeon DL31]
gi|353191188|gb|EHB56696.1| Transcription factor TFIIB cyclin-related protein [Halobacterium
sp. DL1]
Length = 331
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 17/189 (8%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ + L + SD I A + + A + +GR E + + +Y ACR +P +L
Sbjct: 149 VRRLASTLEL--SDSIRDQACQLFRSAQNEDLLRGRSIEAIATASVYGACRCNDRPVILD 206
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ ++ + + + Y L L + P F+ +F L V DT
Sbjct: 207 EVADSARVELSRVRNAYKTLNTELGLPTPPR-----RPQSFIPRFASEL------DVADT 255
Query: 121 AR----DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 176
R ++ + I+ G +P+G+ A LY +A G F+++D+ ++ T+
Sbjct: 256 VRQRAFELAKGAEATIISNGCQPTGVAAACLYKAAREQGQFFTQTDLAEVAETTPVTIRT 315
Query: 177 RLIEFENTD 185
R E E D
Sbjct: 316 RWNELEEVD 324
>gi|397774847|ref|YP_006542393.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|397683940|gb|AFO58317.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
Length = 329
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 15/195 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D++ A Y A+ + GR E V + LY A RQ
Sbjct: 140 RNLKQALGEIDRMASALGLPDDVRETASVIYRRALEADLLPGRSIEGVATASLYAAARQA 199
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + S ++ E+ Y + + L + ++ DP ++ +F L
Sbjct: 200 GTPRSLDEISAVSRVDKAEVARTYRYVVRELGLE-----VQPADPESYVPRFASDLDLAD 254
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
++ ARD+L + K I +G+ P GL AA+Y +AL + +++D+ ++ I E T
Sbjct: 255 ETEL--RARDLLTTAKEKGIHSGKSPVGLAAAAVYAAALLTNEQVTQNDVSEVASISEVT 312
Query: 174 LMKRLIEFENTDSGS 188
+ R E + G+
Sbjct: 313 IRNRYHELLEAEDGA 327
>gi|448586312|ref|ZP_21648386.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445724967|gb|ELZ76593.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 318
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 15/188 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V S LY A R
Sbjct: 128 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMA 187
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + ++ + E+ Y + + L + +K DP ++ +F L G
Sbjct: 188 DTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASEL--GL 240
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +I E T
Sbjct: 241 SDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVT 300
Query: 174 LMKRLIEF 181
+ R E
Sbjct: 301 IRNRYHEL 308
>gi|359417944|ref|ZP_09209980.1| transcription initiation factor IIB, partial [Candidatus
Haloredivivus sp. G17]
gi|358031705|gb|EHK00573.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
Length = 201
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 13/183 (7%)
Query: 1 MRQMKNALNIGESDEIVHV-AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 59
+ M + LN+ ES VH R Y AV + +GR E + ++ +Y+ R++ P L
Sbjct: 15 LNSMISNLNLPES---VHEETARLYEKAVDQGLVRGRSMESIISALIYIVARKQGTPRTL 71
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVC 118
+ S+ I E+G Y Y+A E + + P ++ +F +L G +V
Sbjct: 72 DEISDASGIEKREIGRAYR------YVARELGLRILPAKPQDYVPRFAGKLQLSG--EVQ 123
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
AR+IL + + +G+ P+GL AALY++A+ G K ++ ++ +V + E T+ R
Sbjct: 124 ARARNILKEARERDLLSGKGPTGLAAAALYIAAVLEGEKRTQREVADVVGVTEVTIRNRY 183
Query: 179 IEF 181
E
Sbjct: 184 KEL 186
>gi|297527296|ref|YP_003669320.1| Transcription factor TFIIB cyclin-like protein [Staphylothermus
hellenicus DSM 12710]
gi|297256212|gb|ADI32421.1| Transcription factor TFIIB cyclin-related protein [Staphylothermus
hellenicus DSM 12710]
Length = 313
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 7/162 (4%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+ +Y ACR+ P L + S + + ++ Y
Sbjct: 148 AARIYRRAVEKGLVRGRSIESVIAAAIYAACRELKVPRTLDEISKHTKSSRKDIARCYRL 207
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 139
L + L I +++ DP F+ + L GG V A +IL + +T G+ P
Sbjct: 208 LLKELDIKVQTS-----DPIDFIPRIAHALNLGGG--VMKKAAEILHKARSIGVTAGKDP 260
Query: 140 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+GL AA+Y++A G + ++ +I + + E T+ R E
Sbjct: 261 AGLAAAAVYIAAQLSGERRTQKEIAHVAGVTEVTVRNRYKEL 302
>gi|448491685|ref|ZP_21608525.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445692685|gb|ELZ44856.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 209
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 16/197 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V + LY A RQ
Sbjct: 19 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQA 78
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + + + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 79 GTPRSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 131
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T
Sbjct: 132 SDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVT 191
Query: 174 LMKRLIE-FENTDSGSL 189
+ R E E DS +L
Sbjct: 192 IRNRYHELLEAEDSVAL 208
>gi|332795784|ref|YP_004457284.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
gi|332693519|gb|AEE92986.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
Length = 291
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 7/173 (4%)
Query: 9 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 68
N+G + A Y A+ + KGR E+V A+ +Y ACR+ + P L + S +
Sbjct: 114 NLGLPKAVKEEAAIIYRKALEKKLIKGRSIEEVVAASVYAACRKMNIPTTLDEISKATSA 173
Query: 69 NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 128
N E+G Y L + ++ + DP ++ K L G + KV A +I+
Sbjct: 174 NKKEIGKAYR-----LLLREDVTEVPASDPKYYVMKIAS--LLGLSGKVMTAATEIVERA 226
Query: 129 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
K+ IT+G+ P+ + AA+Y++A +G + S+ +I ++ + + T+ R E
Sbjct: 227 KKAGITSGKDPASIAAAAVYIAANINGERRSQREISEVSGVTQVTIRNRYREI 279
>gi|448411716|ref|ZP_21576072.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669650|gb|ELZ22258.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 324
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + ES + A Y A+ + GR E V S LY A RQ P L +
Sbjct: 145 RMASALGLPES--VRETASVIYRRALDEDLLPGRSIEGVATSALYAAARQAGTPRSLDEI 202
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
+ + E+ Y + + L + ++ DP ++ +F L LP +V A
Sbjct: 203 AAVSRVGKDEIARTYRYVVRELSLE-----IQPADPESYVPRFVSDLDLP---DEVERRA 254
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R +L + K + +G+ P GL AA+Y ++L K ++S++ ++ +I E T+ R E
Sbjct: 255 RQLLGTAKEQGVHSGKSPVGLAAAAVYAASLLANEKVTQSEVSEVANISEVTIRNRYHEL 314
>gi|448301022|ref|ZP_21491017.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584536|gb|ELY38851.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 321
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR + P L +
Sbjct: 144 RMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEV 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + ++ VDP ++ +F L +++V A
Sbjct: 202 AAVSRVERMEIGRTYRYISQELSLE-----MEPVDPKKYVPRFCSEL--SLSEEVQAKAN 254
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y SAL K ++ ++ + + E T+ R E
Sbjct: 255 EIIDTTAEKGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRNRYQE 312
>gi|448581117|ref|ZP_21645107.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445733879|gb|ELZ85439.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 342
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 17/200 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V + +Y A RQ
Sbjct: 146 RNLKQALGEVERMGSALGLPDTVRETASVIYRRALDDDLLPGRSIEGVATAAIYAAARQA 205
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + ++ EL Y + + L + +K DP+ +L +F L
Sbjct: 206 GVPRSLDEVRRVSRVDKMELTRTYRYVSRELGLD-----MKPADPAQYLPRFVSEL--DV 258
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
V AR +L + KR I +G+ P GL AA+Y L + ++S++ + I E T
Sbjct: 259 TDDVERRARSLLDNAKRQGIHSGKSPVGLAAAAIYAGGLLADEELTQSEVSDVTDISEVT 318
Query: 174 LMKRLIE-FENTD-SGSLTI 191
+ R E E T SG +T+
Sbjct: 319 IRNRYRELLEATQKSGEMTV 338
>gi|55378144|ref|YP_135994.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448636768|ref|ZP_21675216.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448648512|ref|ZP_21679643.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448685471|ref|ZP_21693463.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55230869|gb|AAV46288.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445765074|gb|EMA16213.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445775613|gb|EMA26623.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782082|gb|EMA32933.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 324
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 146 RMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+ Y + + L + ++ DP ++ +F L +++V AR
Sbjct: 204 AGVSRVEKDEIARTYRYVVRELSLE-----IQPADPESYVPRFASDL--DLSEEVERRAR 256
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+L + K++ + +G+ P GL AA+Y ++L K ++S + ++ +I E T+ R E
Sbjct: 257 QLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSQVSEVANISEVTIRNRYHEL 315
>gi|448506641|ref|ZP_21614597.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445699591|gb|ELZ51615.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
Length = 179
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G D + A Y A+ + GR E V + LY A RQ P L + + +
Sbjct: 5 LGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAGVSRVE 64
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
E+ Y + + L + ++ DP ++ +F L G + + AR +L + K
Sbjct: 65 KDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GLSDEAERRARSLLDTAK 117
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR---LIEFENT 184
I +G+ P GL AA+Y ++L K ++S++ ++ +I E T+ R L+E E++
Sbjct: 118 EQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRYHELLEAEDS 175
>gi|448629133|ref|ZP_21672532.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445757699|gb|EMA09040.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 324
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 146 RMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+ Y + + L + ++ DP ++ +F L +++V AR
Sbjct: 204 AGVSRVEKDEIARTYRYVVRELSLE-----IQPADPESYVPRFASDL--DLSEEVERRAR 256
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+L + K++ + +G+ P GL AA+Y ++L K ++S + ++ +I E T+ R E
Sbjct: 257 QLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSQVSEVANISEVTIRNRYHEL 315
>gi|374635845|ref|ZP_09707435.1| Transcription factor TFIIB cyclin-related protein [Methanotorris
formicicus Mc-S-70]
gi|373560981|gb|EHP87227.1| Transcription factor TFIIB cyclin-related protein [Methanotorris
formicicus Mc-S-70]
Length = 821
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 9/160 (5%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ LY ACR+ P L + S ++ E+G Y L +
Sbjct: 660 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCRVPRTLDEISEASRVDRKEIGRTYRFLSR 719
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 141
L I L +P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 720 ELGIK-----LAPTNPIDYVPRFASELGLPG---EVESKAIAILQKAAEKGLTSGRGPTG 771
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ AA+Y++++ G + ++ D+ ++ + E T+ R E
Sbjct: 772 VAAAAIYIASVLLGNRRTQRDVAEVAGVTEVTIRNRYKEL 811
>gi|161528849|ref|YP_001582675.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160340150|gb|ABX13237.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 309
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 14/173 (8%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A N+G + A Y A+ +N +G + A +Y+ C+Q P D +
Sbjct: 126 ASNLGIPENAKEHAAYIYRKALEKNLIRGSSIHTMVAGSVYVTCKQLGIPRSADDTTRVS 185
Query: 67 NINVYELGAVYLQLCQVLYI---ADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 123
NI+ L Y +L + L + E++ + QV S+ + + T RL A
Sbjct: 186 NISRRRLSKAYKRLVKNLDLKIDPSETDFVTQVANSLSVSEKTKRL-----------AIK 234
Query: 124 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 176
I+ +K++ I G++P G+ AA+Y+SA+ + S + I K+ +I T+ K
Sbjct: 235 IINDVKKEKIHVGKRPLGITAAAVYLSAINYDEPKSMAKISKVTNISTVTIRK 287
>gi|448292233|ref|ZP_21482893.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448541523|ref|ZP_21624239.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549791|ref|ZP_21628396.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555098|ref|ZP_21631138.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445573033|gb|ELY27560.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445707848|gb|ELZ59696.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712839|gb|ELZ64620.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717843|gb|ELZ69546.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 318
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 15/188 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V S LY A R
Sbjct: 128 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMA 187
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + ++ + E+ Y + + L + +K DP ++ +F L G
Sbjct: 188 GTPRSLDEITSVSRVEKDEIARTYRYVVRELSLE-----IKPADPEQYVPRFASDL--GL 240
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +I E T
Sbjct: 241 SDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVT 300
Query: 174 LMKRLIEF 181
+ R E
Sbjct: 301 IRNRYHEL 308
>gi|448455066|ref|ZP_21594392.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
gi|445814181|gb|EMA64149.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
Length = 333
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 17/195 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A++ N GR E V + LY A RQ
Sbjct: 144 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQD 203
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 112
P L +F+ ++ EL Y + + L + ++ DP ++ +F RL L
Sbjct: 204 GNPRSLDEFTAVSRVDKMELTRTYRYVIRELKLE-----IQPADPESYVPRFVSRLDLSE 258
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+++ AR++L KR IT+G+ P GL +A+Y +AL K ++S + + I E
Sbjct: 259 ETQRL---ARELLDGAKRAGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSAVADISEV 315
Query: 173 TLMKRLIEFENTDSG 187
T+ R E + G
Sbjct: 316 TIRNRYKELLDASEG 330
>gi|193084026|gb|ACF09700.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote AD1000-202-A2]
Length = 307
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 9/182 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
M ++K+ L + +D ++ A Y A+ R KGR + A+C+Y ACR P L
Sbjct: 132 MDKLKDKLTL--TDNVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYAACRITETPRTLD 189
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
D + +NI ++ Y + + L + + DP + + L G +
Sbjct: 190 DIAEGINIKRKDVARSYRIIFRELDLK-----IPVADPVKGVSRIAS--LAGLGEATKRK 242
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +L K+ + G+ P G+ AALY++ ++ G ++ +I + E T+ R +
Sbjct: 243 ALILLNKAKKIGMVAGKDPMGIAAAALYLACISTGGNKTQKEISIASGVTEVTIRNRCVG 302
Query: 181 FE 182
+
Sbjct: 303 LK 304
>gi|448411918|ref|ZP_21576274.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669852|gb|ELZ22460.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 326
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + ++ + A Y A+ N GR E V + LY A RQ + P L +
Sbjct: 149 RMASALGLPKT--VRETASVIYRRALEENLLPGRSIEGVATASLYAAARQANTPRSLDEM 206
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ + EL Y Y+ E N+ +K DP +L +F L + + A
Sbjct: 207 TAVSRVEKMELTRTYR------YVVRELNLEIKPADPESYLPRFVSDLELSDDTE--RRA 258
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R+++ S + I +G+ P GL AA+Y +AL K ++S++ + +I E T+ R E
Sbjct: 259 RELIVSARDQGILSGKSPVGLAAAAVYAAALLTNEKVTQSEVSDVANISEVTIRNRYKEL 318
>gi|292655211|ref|YP_003535108.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448596702|ref|ZP_21653840.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371352|gb|ADE03579.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445740583|gb|ELZ92088.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 15/188 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V S LY A R
Sbjct: 142 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMA 201
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + ++ + E+ Y + + L + +K DP ++ +F L G
Sbjct: 202 GTPRSLDEITSVSRVEKDEIARTYRYVVRELSLE-----IKPADPEQYVPRFASDL--GL 254
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +I E T
Sbjct: 255 SDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVT 314
Query: 174 LMKRLIEF 181
+ R E
Sbjct: 315 IRNRYHEL 322
>gi|448602605|ref|ZP_21656540.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448625071|ref|ZP_21670838.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445746957|gb|ELZ98414.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445748833|gb|EMA00279.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 318
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 15/188 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V S LY A R
Sbjct: 128 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMA 187
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + ++ + E+ Y + + L + +K DP ++ +F L G
Sbjct: 188 DTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASDL--GL 240
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +I E T
Sbjct: 241 SDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVT 300
Query: 174 LMKRLIEF 181
+ R E
Sbjct: 301 IRNRYHEL 308
>gi|399575166|ref|ZP_10768924.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
gi|399239434|gb|EJN60360.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
Length = 329
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 17/189 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V S LY A RQ
Sbjct: 139 RNLKQALGEIDRMASGLGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQA 198
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 112
P L + ++ ++ E+ Y + + L + ++ DP ++ +F L L
Sbjct: 199 GTPRSLDEIASVSRVDKDEIARTYRYVVRELKLE-----IQPADPEQYVPRFASDLDLSD 253
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+++ AR +L + K + + +G+ P GL AA+Y ++L K ++S++ + +I E
Sbjct: 254 ESER---RARKLLQNAKEEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSEVSDVANISEV 310
Query: 173 TLMKRLIEF 181
T+ R E
Sbjct: 311 TIRNRYHEL 319
>gi|18977059|ref|NP_578416.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
DSM 3638]
gi|18892698|gb|AAL80811.1| transcription initiation factor IIB chain b homolog [Pyrococcus
furiosus DSM 3638]
Length = 283
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 5/159 (3%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y A R T+ E A+C+Y CR P L + ++Y E+ + + +
Sbjct: 119 LYREAAKRGLTRRIPIETTVAACIYATCRLFKVPRTLNEIASYSKTEKKEIMKAFRVIVR 178
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 142
L + + + + P+ ++ KF D L +++V DIL + IT+G+ P L
Sbjct: 179 NLNLTPKMLLAR---PTDYVDKFADEL--ELSERVRRRTVDILRRANEEGITSGKNPLSL 233
Query: 143 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
AALY+++L G + S+ +I ++ + E T+ R E
Sbjct: 234 VAAALYIASLLEGERRSQKEIARVTGVSEMTVRNRYKEL 272
>gi|448321963|ref|ZP_21511437.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602545|gb|ELY56520.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M + L I S + VA Y A+ R+ +GR E V LY ACR + P L +
Sbjct: 144 RMASGLGIPRS--VREVASVLYRRALERDLIQGRSIEGVATGTLYAACRLEGMPRSLEEV 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ ++ E+G Y YIA E + K VDP ++ +F L + V A
Sbjct: 202 AMVSRVDRKEIGRTYR------YIAKELELGTKPVDPKQYVPRFCSEL--ELSPTVQAKA 253
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + I +G+ P+G AA+Y+SAL K ++ ++ + + E T+ KR E
Sbjct: 254 SEIIDTTAKKGILSGKSPTGYAAAAIYISALFCDEKRTQREVADVSQVTEVTIRKRYQE 312
>gi|14548146|gb|AAK66803.1|U40238_26 transcription factor TFIIB [uncultured crenarchaeote 4B7]
Length = 211
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 17/181 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
M ++K+ L++ + ++ A Y A+ + KGR + + A+C+Y ACR P L
Sbjct: 32 MDKLKDKLSL--TGAVIEKAAYIYRKAIEKKLVKGRSIQGLVAACVYAACRDTETPRTLG 89
Query: 61 DFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 116
D +N +NI ++ Y + + L +AD N + ++ SI L + T R
Sbjct: 90 DVANGINIRRKDVARCYRLIFRELDLKVPVADPINGIPRIASSIGLGEKTKR-------- 141
Query: 117 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 176
A +IL K+ + G+ P+GL AALY++ +T G ++ +I + + E T+
Sbjct: 142 ---KAVEILRKAKKIGVVAGKDPTGLAAAALYLACITEGGNKTQKEISEASGVTEVTIRN 198
Query: 177 R 177
R
Sbjct: 199 R 199
>gi|290974267|ref|XP_002669867.1| predicted protein [Naegleria gruberi]
gi|284083420|gb|EFC37123.1| predicted protein [Naegleria gruberi]
Length = 738
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 92/210 (43%), Gaps = 36/210 (17%)
Query: 32 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 91
+TK + + V A LY+ CR++ P L+D S +++ELG Y ++C+ I
Sbjct: 311 YTKEKWMDGVIAGALYVVCRREKLPITLLDLSEVTGYSIFELGRKYKEICKTFNI----- 365
Query: 92 VLKQVDPSIFLHKFTDRL-------LPGGNKKV-CDTARDILASMKR-------DWITTG 136
QVDP + L DR+ N +V T DI M+R + + +G
Sbjct: 366 ---QVDP-LDLETLCDRMTNEFSDCFTDENGQVNIKTKTDINLRMRRIIRVAMKECLDSG 421
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 196
R+P L AAL ++ + + S++ + H+ EAT+ +R E + M
Sbjct: 422 RRPIALVAAALLLALQSCSIDMKLSEVARSTHVGEATIRERFNELKQL---------LMN 472
Query: 197 RKKEL---HEGVAANLPNNGPKVSGMNEVL 223
K+L HE LP + P + + E L
Sbjct: 473 LSKQLPWAHEITLKTLPRHLPFILDVVEQL 502
>gi|16081990|ref|NP_394404.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195242|sp|Q9HJM2.1|TF2B2_THEAC RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10640260|emb|CAC12074.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 307
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G +I A Y AV +N +GR E + + +Y ACR+ + P L + S +N
Sbjct: 133 LGIPKDIKETAALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEISKASEVN 192
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
++G Y L + L + LK P ++ +F ++L +K+ + DI+
Sbjct: 193 KKKIGKAYRHLAKELDLN-----LKPTTPFSYISQFCNKL--DLDKQAIVISEDIVRQAM 245
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
I++G+ P+G+ AA+Y++++ G ++ +I +I + E T+ R E
Sbjct: 246 SMGISSGKGPTGIAAAAIYIASVKVGKPRTQKEIARISGVTEVTIRNRYKEI 297
>gi|407463400|ref|YP_006774717.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407047022|gb|AFS81775.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 306
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 9/184 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ MK L I D +V A Y V+ T+GR + ++ LY +CR+ + P L
Sbjct: 127 LHSMKTKLGI--PDNVVENAAYIYRKIVSAKLTRGRTMASLISASLYASCRENNIPRTLD 184
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
D +N N+ L + + L + L Q D S F+ K ++ + +K
Sbjct: 185 DIANAGNVERRILSRDLRTIIKKLGLN-----LNQYDTSSFISKISNNM--NLKEKTKRG 237
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +IL +++ IT G+ P A+LY+S + +G K S+ + + T+ R +
Sbjct: 238 AFEILKLCEKEQITAGKHPVAQAAASLYISCIMNGEKISQKKFSVEAGVSDVTIRNRAVL 297
Query: 181 FENT 184
T
Sbjct: 298 IRKT 301
>gi|435846578|ref|YP_007308828.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672846|gb|AGB37038.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 328
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 12/181 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ +M +AL + ++ + V Y A+ + +GR E V + LY CRQ+ P L
Sbjct: 151 IERMASALGVPKA--VREVTSVIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLE 208
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCD 119
+ + I E+ Y YI++E + L +DP ++ +FT +L +++V
Sbjct: 209 EVTEVSRIERIEISRTYR------YISNELGLELLPIDPKQYVPRFTSKL--DLSQEVET 260
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A++I+ D + +GR PSG AA+Y + L K ++ D+ + + E T+ R
Sbjct: 261 KAKEIIDETA-DPLLSGRGPSGFAAAAIYAATLLCNEKRTQKDVADVAQVTEVTIRNRYQ 319
Query: 180 E 180
E
Sbjct: 320 E 320
>gi|383625175|ref|ZP_09949581.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 329
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 11/187 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 151 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEI 208
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCDTA 121
S + E+ Y + + L + ++ DP ++ +F +D LP ++ A
Sbjct: 209 SAVSRVEKDEIARTYRYVVRELGLE-----VQPADPESYVPRFASDLELPDETER---RA 260
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R +L + K + I +G+ P GL AA+Y +AL K +++D+ ++ I E T+ R E
Sbjct: 261 RRLLKTAKDEGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRYHEL 320
Query: 182 ENTDSGS 188
+ G+
Sbjct: 321 LEAEEGA 327
>gi|15789590|ref|NP_279414.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235302|ref|YP_001688502.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195247|sp|Q9HSB3.1|TF2B6_HALSA RecName: Full=Transcription initiation factor IIB 6; Short=TFIIB 6
gi|10579944|gb|AAG18894.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726368|emb|CAP13149.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 319
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 18/194 (9%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V SC+Y A RQ
Sbjct: 130 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALEDDLLPGRSIEGVATSCVYAAARQA 189
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + ++ + E+ Y + + L + + DP ++ +F L G
Sbjct: 190 GVPRSLDEIADVSRVEKAEIARTYRYVVRELGLE-----VAPADPESYVPRFASDL--GL 242
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR++L + K + +G+ P GL AA+Y +AL K +++ + ++ I E T
Sbjct: 243 SDEASHRARELLKTAKDKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAKVSEVADISEVT 302
Query: 174 LMKR---LIEFENT 184
+ R L+E E+T
Sbjct: 303 IRNRYHELLEAEDT 316
>gi|193083921|gb|ACF09599.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote KM3-34-D9]
Length = 307
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 81/182 (44%), Gaps = 9/182 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
M ++K+ L + +D ++ A Y A+ R KGR + A+C+Y +CR P L
Sbjct: 132 MDKLKDKLTL--TDTVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYASCRMTETPRTLD 189
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
D + +NI ++ Y + + L + + DP + + L G +
Sbjct: 190 DIAEGINIKRKDVARSYRIIFRELDLK-----IPVADPVKGVSRIAS--LAGLGEATKRK 242
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +L K+ + G+ P G+ AALY++ ++ G ++ +I + E T+ R +
Sbjct: 243 ALILLNKAKKIGMVAGKDPMGIAAAALYLACISTGGSKTQKEISIASGVTEVTIRNRCVG 302
Query: 181 FE 182
+
Sbjct: 303 LK 304
>gi|397651191|ref|YP_006491772.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
COM1]
gi|393188782|gb|AFN03480.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
COM1]
Length = 273
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 5/159 (3%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y A R T+ E A+C+Y CR P L + ++Y E+ + + +
Sbjct: 109 LYREAAKRGLTRRIPIETTVAACIYATCRLFKVPRTLNEIASYSKTEKKEIMKAFRVIVR 168
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 142
L + + + + P+ ++ KF D L +++V DIL + IT+G+ P L
Sbjct: 169 NLNLTPKMLLAR---PTDYVDKFADEL--ELSERVRRRTVDILRRANEEGITSGKNPLSL 223
Query: 143 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
AALY+++L G + S+ +I ++ + E T+ R E
Sbjct: 224 VAAALYIASLLEGERRSQKEIARVTGVSEMTVRNRYKEL 262
>gi|302692026|ref|XP_003035692.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
gi|300109388|gb|EFJ00790.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
Length = 331
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 4/160 (2%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
I +AK+ Y KG+ E + A+C+++ACRQ P +F + +++ LG
Sbjct: 140 ISDIAKQLYKRVHDEGVLKGKPQEAITAACIFIACRQAHVPRTFREFCDLTHVSKKLLGF 199
Query: 76 VYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWIT 134
+ +A ++ P L ++ ++L LP + +C DI+ + I
Sbjct: 200 CCRTISLTFNLAPGASTNPSAGPENILPRYFNQLDLPTYVQSIC---HDIIVEARNHGIA 256
Query: 135 TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
GR P + G A+Y + G S +I + E T+
Sbjct: 257 DGRSPVSIAGGAIYFTCHLLGKPKSLREISSAASVSEGTI 296
>gi|291333561|gb|ADD93256.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S08-C82]
Length = 242
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
Query: 24 YGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 83
Y AV + +GR E V A+ LY ACRQ P L + E+G Y + +
Sbjct: 82 YKKAVDKRLIRGRSIEGVAAASLYAACRQCGVPRTLDEIGQASRTGRKEIGRTYRFMVRE 141
Query: 84 LYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLC 143
L + + P ++ +F L G + V A +++ + + +T+GR P+G+
Sbjct: 142 LKMK-----IMPTGPEDYISRFCSGL--GLDADVEAKAYELIKAAQEKELTSGRGPTGIA 194
Query: 144 GAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ +Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 195 ASIIYIASVLCGKRRTQREVAEVAGVTEVTIRNRYKEL 232
>gi|393246466|gb|EJD53975.1| cyclin-like protein [Auricularia delicata TFB-10046 SS5]
Length = 349
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 23/196 (11%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
I +AK+ Y A + + + V A+C+++ACRQ P + + +G
Sbjct: 151 ISDIAKQLYKRADEEKLLRAKSLDAVIAACIFIACRQAQVPRTFREICELTRVPKKIIGQ 210
Query: 76 VYLQLCQVLYIADESN-------VLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 128
Y L Q +A +N ++ P L ++ + L G + A DI+
Sbjct: 211 CYKTLEQAFNLAPGANGSTNDRGIVAGTGPEDLLVRYCNHL--GLPPNIQSYASDIIVEA 268
Query: 129 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKS--DIVKIVHICEATL----------MK 176
+ I GR P + GAA++ + H L +KS DI + + E TL +
Sbjct: 269 RNQGIAAGRSPVSIAGAAIFFTC--HLLDQTKSVKDITGVAGVSEGTLKLVYKLLYADRE 326
Query: 177 RLIEFENTDSGSLTIE 192
+L++ E D+G +++
Sbjct: 327 KLVKQEWIDAGKASLD 342
>gi|257076877|ref|ZP_05571238.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 305
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 90/185 (48%), Gaps = 11/185 (5%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G +I A Y AV +N +GR E + + +Y +CR + P L + S +N
Sbjct: 131 LGIPKDIKESAALIYRKAVEKNLIRGRSIESIVCASIYASCRMINIPRTLDEISKVSEVN 190
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
++G Y L + L + L+ P ++ +F ++L +K+V + I+
Sbjct: 191 KKKIGKAYRHLAKELALN-----LQPTTPYSYVSQFCNKL--DLDKQVIMDSEHIIRLAG 243
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSL 189
++TG+ P+G+ AA+Y++A+ +G + ++ D+ ++ + E T+ R E S L
Sbjct: 244 ESGLSTGKGPTGIAAAAIYIAAMKNGKQRTQKDVARVSGVTEVTIRNRYKEI----SKKL 299
Query: 190 TIEDF 194
I+D
Sbjct: 300 GIDDV 304
>gi|448300614|ref|ZP_21490613.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445585433|gb|ELY39728.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 323
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY + RQ S P L +
Sbjct: 144 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYASARQASTPRSLDEI 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S + EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 202 SAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEQYVPRFVSDLDLSDETERM---A 253
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL AA+Y +AL K +++D+ ++ I E T+ R E
Sbjct: 254 RELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRYKEL 313
>gi|298675089|ref|YP_003726839.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298288077|gb|ADI74043.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + + + A Y AV +N +GR E V A+ LY ACRQ S P L +
Sbjct: 162 RMASALGLPRT--VRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 219
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ E+G Y + + L + L P ++ +F L +V
Sbjct: 220 GEVSRVSRIEIGRTYRFISRELSLK-----LMPTSPIDYVPRFCSGL--KLKSEVQSKGV 272
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+IL IT+GR P+G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 273 EILRQASEKEITSGRGPTGVAAAAIYIASMLCGERRTQREVADVAGVTEVTIRNRYKEL 331
>gi|336254453|ref|YP_004597560.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338442|gb|AEH37681.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 320
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G D + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 127 RNLKYALSEIDRMVSALGVPDPVKETASVIYRRALEKDLIRGRSIEGVATSALYTACRKE 186
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + ++ ++ E+G Y YIADE + L+ +P F+ +F L G
Sbjct: 187 DIPRSLEEVTSVSRVDQREIGRTY------RYIADELGINLEPTNPRQFVPRFCSELDVG 240
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGL 142
K V A +I+ + +G+ P+G
Sbjct: 241 --KDVETKAVEIIDETTEQGLHSGKSPTGF 268
>gi|448345333|ref|ZP_21534230.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445635331|gb|ELY88501.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 329
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 15/195 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ GR E V S LY A RQ
Sbjct: 140 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALEDELLPGRSIEGVATSSLYAAARQA 199
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + S ++ E+ Y + + L + ++ DP ++ +F L
Sbjct: 200 GTPRSLDEISAVSRVDKAEVARTYRYVVRELGLE-----VQPADPVSYVPRFASDLDLSD 254
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
++ ARD+L + K I +G+ P GL AA+Y +AL + +++D+ ++ I E T
Sbjct: 255 ETEL--RARDLLTTAKEKGIHSGKSPVGLAAAAVYAAALLTNEQVTQNDVSEVASISEVT 312
Query: 174 LMKRLIEFENTDSGS 188
+ R E + G+
Sbjct: 313 IRNRYHELLEAEDGA 327
>gi|448524328|ref|ZP_21619310.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445700398|gb|ELZ52399.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 269
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G D + A Y A+ + GR E V + LY A RQ P L + + +
Sbjct: 95 LGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAGVSRVE 154
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
E+ Y + + L + ++ DP ++ +F L G + + AR +L + K
Sbjct: 155 KDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GLSDEAERRARSLLDTAK 207
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR---LIEFENT 184
I +G+ P GL AA+Y ++L K ++S++ ++ +I E T+ R L+E E++
Sbjct: 208 EQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRYHELLEAEDS 265
>gi|448455329|ref|ZP_21594509.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445813931|gb|EMA63904.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 209
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 15/194 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V + LY A RQ
Sbjct: 19 RNLKQALGEVDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQA 78
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + + + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 79 GTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 131
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR +L + K I +G+ P GL AA+Y ++L K ++S++ + +I E T
Sbjct: 132 SDEAERRARSLLDTAKSQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSDVANISEVT 191
Query: 174 LMKRLIEFENTDSG 187
+ R E + G
Sbjct: 192 IRNRYHELLEAEDG 205
>gi|399578968|ref|ZP_10772712.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
gi|399235994|gb|EJN56934.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
Length = 318
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 9/191 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +AL G +D I A + + A N GR E + A+ +Y CR +P
Sbjct: 134 VRRITSAL--GLADSIREQACQLFRSAQRENLLLGRSIEAIAAASVYGVCRCHGRPITRD 191
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
D + ++ + Y L + L + + V P + K L K+V
Sbjct: 192 DLVDVARVDHSGVTNAYKTLNRELGLPTQP-----VAPQSLIPKLASEL--DVEKRVRRR 244
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
AR + IT G +PSG+ A LY+++ HG +++ + + ATL R E
Sbjct: 245 ARTLAERAHETSITNGYQPSGVAAACLYLASREHGESLTQTQVAEAAGTTSATLRARRAE 304
Query: 181 FENTDSGSLTI 191
G + +
Sbjct: 305 LTELIDGEVRV 315
>gi|313126285|ref|YP_004036555.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448286126|ref|ZP_21477361.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292650|gb|ADQ67110.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445575177|gb|ELY29656.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 330
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 9/187 (4%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY A RQ P L +
Sbjct: 151 RMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDEL 208
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ EL Y + + L + ++ DP ++ +F L + + AR
Sbjct: 209 ETVSRVDKMELTRTYRYVVRELKLE-----IEPADPEQYVPRFASEL--DLSDEAERQAR 261
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
D+L + K+ I +G+ P GL AA+Y +AL K ++S++ ++ I E T+ R E
Sbjct: 262 DLLRNAKKAGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSEVASISEVTIRNRYKELL 321
Query: 183 NTDSGSL 189
D L
Sbjct: 322 EVDDAGL 328
>gi|385803088|ref|YP_005839488.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728580|emb|CCC39735.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ GR E V + LY A RQ P L +
Sbjct: 167 RMASALGLPEN--VRETASVIYRRALDEELLPGRSIEGVATASLYAAARQAGTPRSLDEI 224
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+N + E+ Y + + L + +K DP ++ +F L + + AR
Sbjct: 225 TNVSRVGRDEIARTYRYVVRELKLQ-----IKPADPEQYVPRFASDL--DLSDEAERRAR 277
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+L S K + +G+ P GL AA+Y ++L K ++ ++ + +I E T+ R E
Sbjct: 278 QLLRSAKEQGVHSGKSPVGLAAAAVYAASLLINEKVTQKEVSSVANISEVTIRNRYHEL 336
>gi|110667646|ref|YP_657457.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109625393|emb|CAJ51817.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ GR E V + LY A RQ P L +
Sbjct: 167 RMASALGLPEN--VRETASVIYRRALDEELLPGRSIEGVATASLYAAARQAGTPRSLDEI 224
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+N + E+ Y + + L + +K DP ++ +F L + + AR
Sbjct: 225 TNVSRVGRDEIARTYRYVVRELKLQ-----IKPADPEQYVPRFASDL--DLSDEAERRAR 277
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+L S K + +G+ P GL AA+Y ++L K ++ ++ + +I E T+ R E
Sbjct: 278 QLLRSAKEQGVHSGKSPVGLAAAAVYAASLLINEKVTQKEVSSVANISEVTIRNRYHEL 336
>gi|448474119|ref|ZP_21602087.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445818399|gb|EMA68258.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 380
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y A+ + +GR E V + LY ACRQ+ P L + ++ + E+G Y + Q
Sbjct: 222 IYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADVSRVPQKEIGRTYRYISQ 281
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 142
L + LK VDP F+ +F L +++V A +I+ + +G+ P+G
Sbjct: 282 ELGLE-----LKPVDPKQFVPRFASALQL--SEEVQSKATEIIDVSAEQGLLSGKSPTGF 334
Query: 143 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 335 AAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 372
>gi|448666488|ref|ZP_21685133.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445771619|gb|EMA22675.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 322
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + ++ + A Y A+ + GR E V S LY A R P L +
Sbjct: 145 RMASALGLPQN--VRETASVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEM 202
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + EL Y + + L + ++ DP +L +F L G +++ AR
Sbjct: 203 ARVSRVEKMELTRTYRYIVRELSLE-----VQPADPEHYLPRFISDL--GLSEETQRQAR 255
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
D++ ++ + +G+ P G+ AA+Y +AL K ++S + + I E T+ R E
Sbjct: 256 DLIEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVADISEVTIRNRYKEL 314
>gi|374724899|gb|EHR76979.1| transcription initiation factor TFIIB [uncultured marine group II
euryarchaeote]
Length = 337
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 11/164 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y F GR V A+C YL RQ++ P + D S ++ EL + Q
Sbjct: 170 AARLYRRLSGEGFVTGRSIAGVTAACAYLVARQENLPRQIPDMSRSFDVTEKELSRLIRQ 229
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCDTARDILASMKRDWITTGRK 138
+ + L N+ K P + KF +D LP + + + W G+K
Sbjct: 230 VSRRL------NLHKISSPDQYFDKFISDLQLPPNTHIQVGHLWNAIQPHEDIW--QGKK 281
Query: 139 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL--MKRLIE 180
P G+ A +Y ++ G ++S++ + ++ E TL + RLI+
Sbjct: 282 PMGVAAALIYKASSESGSPRTQSEVCGVANVSEVTLRGLLRLID 325
>gi|222479934|ref|YP_002566171.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|222452836|gb|ACM57101.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 15/194 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A++ N GR E V + LY A RQ
Sbjct: 144 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQA 203
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + S ++ EL Y + + L + ++ DP ++ +F RL G
Sbjct: 204 GNPRSLDEISAVSRVDKMELTRTYRYVIRELKLE-----IQPADPGSYVPRFVSRL--GL 256
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+++ AR++L S KR IT+G+ P GL +A+Y +AL K ++S + ++ I E T
Sbjct: 257 SEETQRVARELLDSAKRAGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSEVADISEVT 316
Query: 174 LMKRLIEFENTDSG 187
+ R E + G
Sbjct: 317 IRNRYKELLDASEG 330
>gi|302349045|ref|YP_003816683.1| transcription initiation factor IIB [Acidilobus saccharovorans
345-15]
gi|302329457|gb|ADL19652.1| Transcription initiation factor IIB [Acidilobus saccharovorans
345-15]
Length = 318
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Query: 14 DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 73
D + A + Y A + T+GR E V A+ LY ACR+ P + D + L +
Sbjct: 144 DRVKEEASKLYRDATEKGLTRGRSIESVVAATLYAACRKLKIPCTIDDIAKNLPSKSADT 203
Query: 74 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWI 133
+ C L + D + ++P +F+ + L G + A IL + +
Sbjct: 204 KR-EVARCYRLLVRDLGVDIPVIEPELFISRIVSAL--GLPDYITIEAAKILREARNKGV 260
Query: 134 TTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
T G+ PSGL AA+Y++AL +GL+ ++ +I + + E T+ R E
Sbjct: 261 TAGKDPSGLAAAAVYLAALKNGLRRTQKEIAHVAGVTEVTVRNRYKEL 308
>gi|42557795|emb|CAF28768.1| putative transcription initiation factor TFIIB [uncultured
crenarchaeote]
Length = 304
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 9/175 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
++K+ L +G D ++ A Y A+ + +GR + A+ LY ACR P L D
Sbjct: 129 RLKDKLAVG--DAVIEKAAYVYRKALEKGLVRGRSISALVAAALYAACRDTETPRTLKDI 186
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ NI ++ Y L + L + + VDP + + + G ++K A
Sbjct: 187 AHASNIKKKDVARCYRLLIRELDLK-----MPVVDPVKCVARIASK--SGLSEKTKRKAL 239
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
+IL ++ I+ G+ P GL AALYV+ + +G ++ D+ + + E T+ R
Sbjct: 240 EILKKAEQGKISAGKDPMGLAAAALYVACVMNGENKTQKDVAEAAGVTEVTIRNR 294
>gi|433591402|ref|YP_007280898.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448332920|ref|ZP_21522140.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433306182|gb|AGB31994.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445624764|gb|ELY78139.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 324
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 9/181 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ +M +AL + E A Y AV GR E + +CLY A RQ+ P L+
Sbjct: 143 IERMASALGLPEP--CRETAGVIYRRAVEEELLPGRSIEAMATACLYAAARQQGTPRTLV 200
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
F++ + + Y L L + ++ DP +L ++ L G +
Sbjct: 201 AFASVSRVEKLPIQRAYRYLSSELGLK-----IEPADPIHYLPQYASEL--GVGDETERL 253
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
AR IL + K + +GR P+GL AA+Y + ++ I + + T+ R E
Sbjct: 254 ARKILEAAKDRDLHSGRSPAGLAAAAIYGAGRLTDEGLTQERIGEETGVSGVTVRNRYRE 313
Query: 181 F 181
Sbjct: 314 L 314
>gi|448349399|ref|ZP_21538241.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445640642|gb|ELY93729.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 318
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 14/180 (7%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + V Y A+ + +GR E V + LY CRQ+ P L +
Sbjct: 143 RMASALGVPRS--VREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEDIPRSLEEI 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDT 120
+ I E+ Y YI++E + L +DP ++ +F+ +L LP ++V
Sbjct: 201 TEVSRIERIEVSRTYR------YISNELGLELLPIDPKQYVPRFSSKLDLP---QEVEAK 251
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +I+ D + +GR PSG AA+Y +AL K ++ ++ + + E T+ R E
Sbjct: 252 ANEIIEETA-DPLLSGRGPSGFAAAAIYAAALLCNEKRTQKEVADVAQVTEVTIRNRYQE 310
>gi|322369913|ref|ZP_08044475.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320550249|gb|EFW91901.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 320
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 89/198 (44%), Gaps = 15/198 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + +A Y A+ + GR E V SC+Y A RQ
Sbjct: 130 RNLKQALGEIDRMASALGLPDNVREMASVIYRRALNEDLLPGRSIEGVSTSCVYAAARQA 189
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + + ++ E+ Y + + L + +K DP ++ +F L
Sbjct: 190 GVPRSLDEITEVSRVDKSEVARTYRYVVRELSLE-----VKPADPESYVPRFASGLEL-- 242
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR++L + K + +G+ P GL AA+Y +AL K +++++ + I E T
Sbjct: 243 SDEAEHRARELLRNAKEQGVHSGKSPVGLAAAAVYAAALLTNEKTTQAEVSDVADISEVT 302
Query: 174 LMKRLIEFENTDSGSLTI 191
+ R E + G++ +
Sbjct: 303 IRNRYHELLEAEEGTVAL 320
>gi|257052263|ref|YP_003130096.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691026|gb|ACV11363.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + +Y A RQ P L +
Sbjct: 144 RMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDEL 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ + E+ Y + + L + ++ DP ++ +FT L +++ AR
Sbjct: 202 TDVSRVEKDEIARTYRYVVRELGLE-----VRPADPESYVPRFTSDL--ELSEEAERRAR 254
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
++LA+ K + + +G+ P GL AA+Y ++L K +++ + ++ I E T+ R E
Sbjct: 255 ELLANAKEEGVHSGKSPVGLAAAAIYAASLLTNEKTTQAAVSEVADISEVTIRNRYHEL 313
>gi|448391802|ref|ZP_21566897.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445665214|gb|ELZ17892.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 323
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 144 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEI 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S + EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 202 SAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 253
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL AA+Y +AL K +++D+ ++ I E T+ R E
Sbjct: 254 RELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRYKEL 313
>gi|448371933|ref|ZP_21557052.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445647024|gb|ELZ00005.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 318
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 14/180 (7%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + V Y A+ + +GR E V + LY CRQ+ P L +
Sbjct: 143 RMASALGVPRS--VREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLEEI 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDT 120
+ I E+ Y YI++E + L +DP ++ +F+ +L LP ++V
Sbjct: 201 TEVSRIERIEVSRTYR------YISNELGLELLPIDPKQYVPRFSSKLNLP---QEVEAK 251
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +I+ D + +GR PSG AA+Y +AL K ++ ++ + + E T+ R E
Sbjct: 252 ANEIIEETA-DPLLSGRGPSGFAAAAIYAAALLCNEKRTQKEVADVAQVTEVTIRNRYQE 310
>gi|448575069|ref|ZP_21641592.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445732748|gb|ELZ84330.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 315
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY A R P L +
Sbjct: 136 RMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATSSLYAAARMADTPRSLDEI 193
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ + E+ Y + + L + +K DP ++ +F L G + + AR
Sbjct: 194 TSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASEL--GLSDEPERRAR 246
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+L + K + +G+ P GL AA+Y ++L K +++++ ++ +I E T+ R E
Sbjct: 247 QLLKNAKEQSVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRYHEL 305
>gi|389846515|ref|YP_006348754.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448615811|ref|ZP_21664574.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243821|gb|AFK18767.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751942|gb|EMA03373.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 345
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + ES + A Y A+ + GR E V + LY + R S P L +
Sbjct: 166 RMASALGLPES--VRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSLDEI 223
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ + E+ Y + + L + +K DP ++ +F L G + + AR
Sbjct: 224 TSVSRVEKEEIARTYRYVVRELKLE-----IKPADPEQYVPRFASEL--GLSDESERRAR 276
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+L + K + +G+ P GL AA+Y ++L K +++++ + +I E T+ R E
Sbjct: 277 QLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSGVANISEVTIRNRYHEL 335
>gi|448730858|ref|ZP_21713162.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445793035|gb|EMA43630.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 334
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 87/179 (48%), Gaps = 11/179 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A++ + +GR E V LY ACR++ P L +
Sbjct: 158 RMASALGVPRS--VREVASVIYRRALSDDLIRGRSIEAVATGALYAACRKEGIPRSLEEV 215
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
++ + E+G Y YIA E + ++ DP ++ +F L +++V A
Sbjct: 216 THVARVEQKEIGRTY------RYIARELELGMRPTDPQKYVPRFCSAL--DLSEEVQSKA 267
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+++ + + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 268 NEVIEASVAEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 326
>gi|9909704|emb|CAC04514.1| transcription factor II B-related factor [Homo sapiens]
Length = 222
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 73 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 130
Query: 61 DFSNYLNIN 69
D S+ L ++
Sbjct: 131 DLSDLLQVD 139
>gi|448335856|ref|ZP_21524987.1| transcription initiation factor TFB [Natrinema pellirubrum DSM
15624]
gi|445615482|gb|ELY69129.1| transcription initiation factor TFB [Natrinema pellirubrum DSM
15624]
Length = 308
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 9/174 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +AL + E+ I A + + A + +GR E + A+ +Y ACR +P L
Sbjct: 132 VRRISSALELSET--IRDQACQLFRSAQNEDLLQGRSIEAMAAASVYGACRCNGRPRTLD 189
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
D + + + Y L L + + V PS F+ + L + ++
Sbjct: 190 DITESARVEQSRVTNAYTTLNTELGLP-----AQPVTPSAFVPRLASEL--DVSDQIRQR 242
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
AR + + + TTG +PSG A LY + G ++SD+ + ++ T+
Sbjct: 243 ARQLAEASESTGATTGVRPSGFAAACLYKAGREDGRWLTQSDVADVANVSVVTV 296
>gi|254166565|ref|ZP_04873419.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254167488|ref|ZP_04874340.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596282|ref|YP_003482978.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
gi|197623751|gb|EDY36314.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624175|gb|EDY36736.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289534069|gb|ADD08416.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
Length = 313
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 11/183 (6%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G ++ A Y AV +N +GR E + A+ +Y ACR+ P L + + +N
Sbjct: 139 MGLPKDVRETAAIIYRKAVEKNLIRGRSIESIVAASIYAACRKVGMPRTLDEVAKASELN 198
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
++G Y L + L + LK + ++ +F +L +K V + A +I+
Sbjct: 199 KKKIGRAYRHLTKELNLN-----LKPTTATSYITQFCSKLHL--DKNVVNKAEEIVQQAT 251
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSL 189
IT+G+ P+G+ AA+Y++A ++ +I ++ + E T+ R E S +L
Sbjct: 252 ERGITSGKGPTGVAAAAIYIAANMMNEPRTQKEIAEVAGVTEVTIRNRYKEI----SSAL 307
Query: 190 TIE 192
+E
Sbjct: 308 NVE 310
>gi|448386369|ref|ZP_21564495.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445655320|gb|ELZ08166.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 324
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 9/181 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ +M +AL + E A Y AV GR E + +CLY A RQ+ P L+
Sbjct: 143 IERMASALGLPEP--CRETAGVIYRRAVEEELLPGRSIEAMATACLYAAARQQGTPRTLV 200
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
F++ + + Y L L + ++ DP +L ++ L G +
Sbjct: 201 AFASVSRVEKLPVQRAYRYLSSELGLK-----IEPADPIHYLPQYASEL--GVGDETERL 253
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
AR IL + K + +GR P+GL AA+Y + ++ I + + T+ R E
Sbjct: 254 ARKILEAAKDRDLHSGRSPAGLAAAAIYGAGRLTDEGLTQERIGEETGVSGVTVRNRYRE 313
Query: 181 F 181
Sbjct: 314 L 314
>gi|448590590|ref|ZP_21650355.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445734086|gb|ELZ85645.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 315
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY A R P L +
Sbjct: 136 RMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATSALYAAARMADTPRSLDEI 193
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ + E+ Y + + L + +K DP ++ +F L G + + AR
Sbjct: 194 TSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASEL--GLSDEPERRAR 246
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+L + K + +G+ P GL AA+Y ++L K +++++ ++ +I E T+ R E
Sbjct: 247 QLLKNAKEQSVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRYHEL 305
>gi|338753414|ref|NP_001229719.1| transcription factor IIIB 90 kDa subunit isoform 8 [Homo sapiens]
gi|16876927|gb|AAH16743.1| BRF1 protein [Homo sapiens]
gi|119602314|gb|EAW81908.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_c
[Homo sapiens]
gi|410332911|gb|JAA35402.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
Length = 208
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 61 DFSNYLNIN 69
D S+ L ++
Sbjct: 151 DLSDLLQVD 159
>gi|284165712|ref|YP_003403991.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284015367|gb|ADB61318.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 323
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 144 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEI 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S + EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 202 SAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 253
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL AA+Y +AL K +++D+ ++ I E T+ R E
Sbjct: 254 RELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRYKEL 313
>gi|426378233|ref|XP_004055847.1| PREDICTED: transcription factor IIIB 90 kDa subunit [Gorilla
gorilla gorilla]
Length = 208
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 61 DFSNYLNIN 69
D S+ L ++
Sbjct: 151 DLSDLLQVD 159
>gi|335441148|ref|ZP_08561869.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334888319|gb|EGM26618.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 325
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + +Y A RQ P L +
Sbjct: 146 RMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDEL 203
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ + E+ Y + + L + ++ DP ++ +FT L +++ AR
Sbjct: 204 TDVSRVEKDEIARTYRYVVRELGLE-----VRPADPESYVPRFTSDL--ELSEEAERRAR 256
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
++LA+ K + + +G+ P GL AA+Y ++L K +++ + ++ I E T+ R E
Sbjct: 257 ELLANAKEEGVHSGKSPVGLAAAAIYAASLLTNEKTTQAAVSEVADISEVTIRNRYHEL 315
>gi|47216763|emb|CAG03767.1| unnamed protein product [Tetraodon nigroviridis]
Length = 138
Score = 54.7 bits (130), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 21 KRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 80
+R G++ R FT G Q A L RQ+ + + + Y QL
Sbjct: 4 QRRMGVSANRGFTAGSPGPQAAAMLQPLHSRQRRPAPHTYHYMAWSGGR--DQPGSYFQL 61
Query: 81 CQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKP 139
+ ++S+ K +DP +++ +F L G N +V TA ++ MKRDW+ TGR+P
Sbjct: 62 -STRPLFNQSH-FKDLDPCLYIPRFAQMLEFGEKNHEVSMTAMRLVQRMKRDWMHTGRRP 119
Query: 140 SGLCGAALYVSALT 153
SGLCGA + L+
Sbjct: 120 SGLCGAGKSLYTLS 133
>gi|408402853|ref|YP_006860836.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363449|gb|AFU57179.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 292
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 15/177 (8%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G SD I+ Y A ++ +GR T + A+ +Y +CR+ L D + +I
Sbjct: 121 LGLSDAIMEKTAYLYRKAHEKHLVRGRSTSSILAAAIYASCRELGASRTLKDVAKATDIK 180
Query: 70 VYELGAVY----LQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDIL 125
+ Y L+L + +AD + ++ S L + T R+ DT D++
Sbjct: 181 RKAISRSYRILVLELDIKVPLADPMKCIAKIANSAKLTEKTKRM-------AMDTMNDLI 233
Query: 126 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
I+ G+ P GL LY+S L +G ++ DI + + E T+ R + +
Sbjct: 234 GKE----ISAGKLPMGLAATVLYMSCLANGESKTQKDIADMAGVTEVTIRNRFKDLK 286
>gi|448381827|ref|ZP_21561803.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
gi|445662908|gb|ELZ15671.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
Length = 341
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 17/196 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + + Y A+ + GR E V + LY A RQ
Sbjct: 152 RNLKQALGEIDRMASALGLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQA 211
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 112
P L + + + E+ Y + + L + ++ DP ++ +F L L
Sbjct: 212 GTPRSLDEIAAVSRVEKAEIARTYRYVVRELGLE-----VQPADPESYVPRFASDLDLAD 266
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
++ ARD+L++ K + +G+ P GL AA+Y +AL K +++D+ + I E
Sbjct: 267 ETER---RARDLLSTAKERGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEV 323
Query: 173 TLMKRLIEFENTDSGS 188
T+ R E D G+
Sbjct: 324 TIRNRYKELLEADGGA 339
>gi|397773294|ref|YP_006540840.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340933|ref|ZP_21529900.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682387|gb|AFO56764.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629271|gb|ELY82562.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY A RQ P L +
Sbjct: 147 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 204
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S + EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 205 SAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 256
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL AA+Y +AL K +++++ ++ I E T+ R E
Sbjct: 257 RELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKEL 316
>gi|389746675|gb|EIM87854.1| cyclin-like protein [Stereum hirsutum FP-91666 SS1]
Length = 353
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 20/203 (9%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
I +AK+ Y + +G+ E V A+C+++ACRQ P + N +++ LG
Sbjct: 150 ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTHVSKKVLGQ 209
Query: 76 VYLQLCQVLYIA------DESNVLKQVD--PSIFLHKFTDRL-LPGGNKKVCDTARDILA 126
Y L Q ++ + +N + + P L ++ + L LP +C +DI+
Sbjct: 210 CYKALEQAFNLSPGAQNHNSTNGTQVISTGPEDLLIRYCNHLDLPPYFHGIC---KDIVV 266
Query: 127 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDS 186
+ I GR P + G A++ + G S +I + + E T +K + + D
Sbjct: 267 EARNRGIADGRSPISIAGGAIFFTCFLLGKPKSLREICTVAGVSEGT-VKLVYKLYCAD- 324
Query: 187 GSLTIEDFMARKKELHEGVAANL 209
+D + ++K + EG ANL
Sbjct: 325 -----KDKLVKQKWIDEG-KANL 341
>gi|448345937|ref|ZP_21534826.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633870|gb|ELY87057.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY A RQ P L +
Sbjct: 147 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 204
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S + EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 205 SAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 256
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL AA+Y +AL K +++++ ++ I E T+ R E
Sbjct: 257 RELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKEL 316
>gi|448336782|ref|ZP_21525873.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627873|gb|ELY81188.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 326
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY A RQ P L +
Sbjct: 147 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 204
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S + EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 205 SAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 256
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL AA+Y +AL K +++++ ++ I E T+ R E
Sbjct: 257 RELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKEL 316
>gi|433593095|ref|YP_007282581.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433308133|gb|AGB33943.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 9/174 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +AL + E+ I A + + A + +GR E + A+ +Y ACR +P L
Sbjct: 149 VRRISSALELSET--IRDQACQLFRSAQNEDLLQGRSIEAMAAASVYGACRCNGRPRTLD 206
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
D + + + Y L L + + V PS F+ + L + ++
Sbjct: 207 DITESARVEQSRVTNAYTTLNTELGLP-----AQPVTPSAFVPRLASEL--DVSDQIRQR 259
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
AR + + + TTG +PSG A LY + G ++SD+ + ++ T+
Sbjct: 260 ARQLAEASESTGATTGVRPSGFAAACLYKAGREDGRWLTQSDVADVANVSVVTV 313
>gi|161528848|ref|YP_001582674.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160340149|gb|ABX13236.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 306
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ +MK L++ SD I A Y A+ + KGR + A+CLY ACR+ P L
Sbjct: 131 LSKMKEKLSL--SDAIAEKASYIYRKALEKKLVKGRSIASLVAACLYAACRESEAPRTLR 188
Query: 61 DFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 116
+ + + I E+ A Y + + L + D + + ++ + L + T R
Sbjct: 189 EVAASIGIKRKEISATYRLIFKELDLKMPVIDSVSCIAKIASNAELSEKTKRY------- 241
Query: 117 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 176
A IL ++ ++ G+ P GL +ALY++++ ++ +I I E T+
Sbjct: 242 ----AIKILKKAEKQNMSAGKHPMGLAASALYLASIDLEEFRTQKEIADAAGITEVTVRN 297
Query: 177 R 177
R
Sbjct: 298 R 298
>gi|448301306|ref|ZP_21491299.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445584042|gb|ELY38366.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 325
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 9/186 (4%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + ES + A Y A+ + GR E V + LY + RQ P L +
Sbjct: 147 RMASALGLPES--VRETASVIYRRALEEDLLPGRSIEGVATASLYASARQAGTPRSLDEI 204
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+ Y + + L + +K DP ++ +F L + + AR
Sbjct: 205 SAVSRVEKDEVARTYRYVVRELGLE-----VKPADPEQYVPRFASDL--DLSDETERRAR 257
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
+L++ K I +G+ P GL AA+Y +AL K +++D+ ++ +I E T+ R E
Sbjct: 258 SLLSTAKEKGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVANISEVTIRNRYHELL 317
Query: 183 NTDSGS 188
+ G+
Sbjct: 318 EAEEGA 323
>gi|359417747|ref|ZP_09209816.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
gi|358031840|gb|EHK00675.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
Length = 306
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 13/149 (8%)
Query: 1 MRQMKNALNIGESDEIVHV-AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 59
+ M + LN+ ES VH R Y AV + +GR E + ++ +Y+ R++ P L
Sbjct: 169 LNSMISNLNLPES---VHEETARLYEKAVDQGLVRGRSMESIISALIYIVARKQGTPRTL 225
Query: 60 IDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVC 118
+ S+ I E+G Y Y+A E + + P ++ +F +L G +V
Sbjct: 226 DEISDASGIEKREIGRAY------RYVARELGLRILPAKPQDYVPRFAGKLQLSG--EVQ 277
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAAL 147
AR+IL + + +G+ P+GL AAL
Sbjct: 278 ARARNILKEARERDLLSGKGPTGLAAAAL 306
>gi|344212001|ref|YP_004796321.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343783356|gb|AEM57333.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 322
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + ++ + + Y A+ + GR E V S LY A R P L +
Sbjct: 145 RMASALGLPQN--VRETSSVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEM 202
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + EL Y + + L + ++ DP +L +F L G +++ AR
Sbjct: 203 ARVSRVEKMELTRTYRYIVRELSLE-----VQPADPEHYLPRFISDL--GLSEETQRQAR 255
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
D++ ++ + +G+ P G+ AA+Y +AL K ++S + + I E T+ R E
Sbjct: 256 DLIEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVADISEVTIRNRYKEL 314
>gi|403413738|emb|CCM00438.1| predicted protein [Fibroporia radiculosa]
Length = 353
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 13/169 (7%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
I +AK+ Y + +G+ + V A+C+++ACRQ P + N +++ LG
Sbjct: 151 ISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFREICNLTHVSKKVLGQ 210
Query: 76 VYLQLCQVLYIADESNVLKQ---------VDPSIFLHKFTDRL-LPGGNKKVCDTARDIL 125
Y L Q + ++ P L ++ + L LP + +C DI+
Sbjct: 211 CYKALEQAFNLTPGASATTDRHLTTPAAARGPEDLLVRYCNHLDLPPNVQPICS---DII 267
Query: 126 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
+ I GR P + G A+Y + G S DI + + E T+
Sbjct: 268 IQARELGIADGRSPVSIAGGAIYFTCHLLGKVKSAKDISTVAGVSEGTI 316
>gi|448306111|ref|ZP_21496021.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445598749|gb|ELY52801.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 325
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 146 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEI 203
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S + EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 204 SAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFISDLDLSDETERM---A 255
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL AA+Y +AL K +++D+ + I E T+ R E
Sbjct: 256 RELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRYKEL 315
>gi|448303109|ref|ZP_21493059.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445594116|gb|ELY48283.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 323
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 144 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEI 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S + EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 202 SAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 253
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL AA+Y +AL K +++D+ + I E T+ R E
Sbjct: 254 RELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRYKEL 313
>gi|299738096|ref|XP_001838087.2| transcription factor TFIIIB complex subunit brf1 [Coprinopsis
cinerea okayama7#130]
gi|298403152|gb|EAU83664.2| transcription factor TFIIIB complex subunit brf1 [Coprinopsis
cinerea okayama7#130]
Length = 864
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 30/133 (22%)
Query: 338 SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 397
D S +D+ E+D ++ +E+E K+ +W E+NREYLE AAK A
Sbjct: 621 GDELSGLDEEELDRFILSEQEVKIKERVWVELNREYLEALAAKGDQTEPA---------- 670
Query: 398 CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSK 456
KSRK ++ ++ TA E+ R ++ K + S +
Sbjct: 671 -------------------TKSRKRRKTNNKPRDASTPAGGTAAESVRNLIKKNPKYSKR 711
Query: 457 INYDVLEKLFDDS 469
INYD L+ LF D
Sbjct: 712 INYDALKDLFVDG 724
>gi|284163770|ref|YP_003402049.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|448388030|ref|ZP_21564970.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|284013425|gb|ADB59376.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|445670681|gb|ELZ23278.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 319
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M ++L I S + VA Y A+ + +GR E V S LY ACR + P L +
Sbjct: 144 RMASSLGIPRS--VREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + ++ VDP + +F L +++V A
Sbjct: 202 AAVSRVERKEIGRTYRYVAQELSLE-----MEPVDPKQYTPRFCSEL--DLSEEVQAKAT 254
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ +I ++ + E T+ R E
Sbjct: 255 EIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREIAEVAQVTEVTIRNRYQE 312
>gi|433591588|ref|YP_007281084.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433306368|gb|AGB32180.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 341
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 17/196 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + + Y A+ + GR E V + LY A RQ
Sbjct: 152 RNLKQALGEIDRMASALGLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQA 211
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 112
P L + S + E+ Y + + L + ++ DP ++ +F L L
Sbjct: 212 GTPRSLDEISAVSRVEKAEIARTYRYVVRELGLE-----VQPADPESYVPRFASDLDLAD 266
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
++ A D+L++ K + +G+ P GL AA+Y +AL K +++D+ + I E
Sbjct: 267 ETER---RAHDLLSTAKERGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEV 323
Query: 173 TLMKRLIEFENTDSGS 188
T+ R E D G+
Sbjct: 324 TIRNRYKELLEADGGA 339
>gi|448300851|ref|ZP_21490848.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584841|gb|ELY39146.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 316
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 17/150 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 127 RNLKYALSEIDRMVSALGVPRPVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKE 186
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L G
Sbjct: 187 DIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSELDVG 240
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGL 142
K+V A +I+ + + +G+ P+G
Sbjct: 241 --KEVETKAVEIIDTTTEQGLHSGKSPTGF 268
>gi|292655824|ref|YP_003535721.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448289811|ref|ZP_21480974.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448570851|ref|ZP_21639362.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448595749|ref|ZP_21653196.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|14195256|sp|Q9YGA5.1|TFB2_HALVD RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|5410473|gb|AAD43074.1|AF143693_1 transcription factor B [Haloferax volcanii]
gi|291372841|gb|ADE05068.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445581328|gb|ELY35689.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445722769|gb|ELZ74420.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445742203|gb|ELZ93698.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 9/187 (4%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY + R P L +
Sbjct: 153 RMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAGTPRSLDEL 210
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ EL Y + + L + +K DP ++ +F L G + + AR
Sbjct: 211 EKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--GLSDEAERQAR 263
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
+L K I +G+ P GL AA+Y +AL K ++S++ + I E T+ R E
Sbjct: 264 QLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELL 323
Query: 183 NTDSGSL 189
G+L
Sbjct: 324 EVQDGTL 330
>gi|386875848|ref|ZP_10118004.1| transcription factor TFIIB repeat protein [Candidatus
Nitrosopumilus salaria BD31]
gi|386806350|gb|EIJ65813.1| transcription factor TFIIB repeat protein [Candidatus
Nitrosopumilus salaria BD31]
Length = 307
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 9/171 (5%)
Query: 13 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 72
SD + A Y A+ R T GR V A+ +Y+ACR L D + NI
Sbjct: 138 SDSVKETAAHIYRKALERKITSGRSIYSVVAASMYIACRNTHTLRNLSDIATATNIKRTN 197
Query: 73 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRD 131
+ Y + + L + + V+ S F+ K ++ L + G K + A +IL
Sbjct: 198 IAQSYRAIVKQLDLK-----IPLVNQSDFILKISNNLKISAGTKNL---AIEILKKATEL 249
Query: 132 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
+ GR P+G+ A++Y S + FS+ I I T+ R E
Sbjct: 250 DMIAGRDPAGMASASIYFSNVVRHDGFSQIQIANASGITAVTVRNRFHELR 300
>gi|448589388|ref|ZP_21649547.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735816|gb|ELZ87364.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 288
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 9/183 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +AL++ + I A + A + +GR E A+C+Y ACR +
Sbjct: 115 IRRLTSALSL--PNHIREQACALFESAQNEDLLRGRSLEGFAAACVYAACRVAGIARSVE 172
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ + E A Y L + L + + DP+ ++ +F +L ++ V
Sbjct: 173 EVCDVAKATEAEHHAAYRALNRDLGLP-----VAPTDPTEYIPRFATKL--DLDRDVERR 225
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
AR+ +A D + G+ P G+ A LY +A G +++D + + TL K +E
Sbjct: 226 AREYVADAHEDGLVAGKNPCGVAAACLYTAARDVGADCTQADAADVADVTPVTLRKTYVE 285
Query: 181 FEN 183
+
Sbjct: 286 LRD 288
>gi|448333191|ref|ZP_21522402.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
gi|445623529|gb|ELY76934.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
Length = 370
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 17/196 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + + Y A+ + GR E V + LY A RQ
Sbjct: 181 RNLKQALGEIDRMASALGLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQA 240
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 112
P L + S + E+ Y + + L + ++ DP ++ +F L L
Sbjct: 241 GTPRSLDEISAVSRVEKAEIARTYRYVVRELGLE-----VQPADPESYVPRFASDLDLAD 295
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
++ A D+L++ K + +G+ P GL AA+Y +AL K +++D+ + I E
Sbjct: 296 ETER---RAHDLLSTAKERGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEV 352
Query: 173 TLMKRLIEFENTDSGS 188
T+ R E D G+
Sbjct: 353 TIRNRYKELLEADGGA 368
>gi|41615067|ref|NP_963565.1| hypothetical protein NEQ276 [Nanoarchaeum equitans Kin4-M]
gi|40068791|gb|AAR39126.1| NEQ276 [Nanoarchaeum equitans Kin4-M]
Length = 315
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 11/185 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+++M + LN+ + E A R Y V + +GR + A LYL R+ + P L
Sbjct: 120 LKKMVDKLNMPKYVE--EEAARIYQKVVEKGLARGRNINTLLAGTLYLVIREYNIPRTLE 177
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
+ I+ ++ Y + + L I K + P+ F++++ L LP +V
Sbjct: 178 ELEKATGISKKDIAKAYRLIVRELGIKP-----KPISPADFVYRYASELNLP---PEVTA 229
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +I+ K+ I +GR P G+ AALY++A+ HG I +I + E T+ R
Sbjct: 230 TAIEIIEEAKKKNIVSGRGPQGIAAAALYIAAIKHGKYVPLKKIGEIAKVTEVTIKNRYK 289
Query: 180 EFENT 184
E N+
Sbjct: 290 EIINS 294
>gi|448677609|ref|ZP_21688799.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448687989|ref|ZP_21693957.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445773284|gb|EMA24317.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779780|gb|EMA30696.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 322
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + ++ + + Y A+ + GR E V S LY A R P L +
Sbjct: 145 RMASALGLPQN--VRETSSVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEM 202
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + EL Y + + L + ++ DP +L +F L G +++ AR
Sbjct: 203 ARVSRVEKMELTRTYRYIVRELSLE-----VQPADPEHYLPRFISDL--GLSEETQRQAR 255
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
D++ ++ + +G+ P G+ AA+Y +AL K ++S + + I E T+ R E
Sbjct: 256 DLVEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVADISEVTIRNRYKEL 314
>gi|126459199|ref|YP_001055477.1| transcription initiation factor IIB [Pyrobaculum calidifontis JCM
11548]
gi|126248920|gb|ABO08011.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum
calidifontis JCM 11548]
Length = 331
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 9/174 (5%)
Query: 9 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 68
++G V A Y A+ + +GR E + A+ LY+ACR P L + Y
Sbjct: 155 SMGVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMLKMPRPLDELVRYTKA 214
Query: 69 NVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGNKKVCDTARDILAS 127
+ E+ Y L + E NV + DP +++ + ++L G + A DIL
Sbjct: 215 SRREVARCYRLLLR------ELNVKVPISDPVLYISRIAEQLKLSG--EAIKLAIDILQK 266
Query: 128 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
K+ IT G+ P+GL AA+Y+++L G ++ D + E T+ R E
Sbjct: 267 AKKAGITAGKDPAGLAAAAVYIASLMLGDNKTQKDFAVAAGVTEVTVRNRYKEL 320
>gi|448540715|ref|ZP_21623636.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549017|ref|ZP_21627793.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555808|ref|ZP_21631737.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445708868|gb|ELZ60703.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445713706|gb|ELZ65481.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717331|gb|ELZ69049.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 332
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 9/187 (4%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY + R P L +
Sbjct: 153 RMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAGTPRSLDEL 210
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ EL Y + + L + +K DP ++ +F L G + + AR
Sbjct: 211 EKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--GLSDEAERQAR 263
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
+L K I +G+ P GL AA+Y +AL K ++S++ + I E T+ R E
Sbjct: 264 QLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELL 323
Query: 183 NTDSGSL 189
G+L
Sbjct: 324 EVQDGTL 330
>gi|433590514|ref|YP_007280010.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433305294|gb|AGB31106.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 146 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEI 203
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S + EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 204 SAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 255
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL A++Y +AL K +++++ + I E T+ R E
Sbjct: 256 RELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSDVASISEVTIRNRYKEL 315
>gi|448383049|ref|ZP_21562478.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445660229|gb|ELZ13026.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 325
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 146 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEI 203
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S + EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 204 SAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 255
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL A++Y +AL K +++++ + I E T+ R E
Sbjct: 256 RELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSDVASISEVTIRNRYKEL 315
>gi|448329711|ref|ZP_21519008.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613635|gb|ELY67331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 326
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 147 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEI 204
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S + EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 205 SAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 256
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL AA+Y +AL K +++++ ++ I E T+ R E
Sbjct: 257 RELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKEL 316
>gi|448579035|ref|ZP_21644351.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445724388|gb|ELZ76021.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 288
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 9/183 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +AL++ + I A + A + +GR E A+C+Y ACR +
Sbjct: 115 IRRLTSALSL--PNHIREQACALFESAQNEDLLRGRSLEGFAAACVYAACRVAGIARSVE 172
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ + E A Y L + L + + DP+ ++ +F +L ++ V
Sbjct: 173 EVCDVAKATESEHHAAYRALNRDLGLP-----VAPTDPTEYIPRFATKL--DLDRDVERR 225
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
AR+ +A + D I G+ P G+ A LY +A G +++D + + TL K +
Sbjct: 226 AREYVADAREDGIVAGKNPCGVAAACLYTAARDVGADCTQADAADVADVTPVTLRKTYVA 285
Query: 181 FEN 183
+
Sbjct: 286 LRD 288
>gi|448624206|ref|ZP_21670279.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445750173|gb|EMA01612.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 309
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 13/181 (7%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL++ S ++ A + Y A + +GR E + A LY CR++ P +
Sbjct: 136 RMGSALDLSWS--LIEEASQLYRHAQDADLIRGRSVEMIAAGSLYATCRRRGLPRPRAEI 193
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP--GGNKKVCDT 120
++ + ++ Y L E + QV + + RL G + +V
Sbjct: 194 ASVARCSCDQVQTGYRAL------NSELGIDAQV---VTARTYVTRLGSDSGLSTRVQSR 244
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A ++ + D IT GR P+G+ A LY++ H + +++++ + + TL R +E
Sbjct: 245 AYELATTADEDGITNGRNPAGVAAACLYLAGTEHDVAPTQTELAALADVSVPTLRARYVE 304
Query: 181 F 181
Sbjct: 305 L 305
>gi|448363001|ref|ZP_21551605.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647623|gb|ELZ00597.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 317
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 127 RNLKYALSEIDRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKE 186
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 187 GIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--D 238
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGL 142
+K V A DI+ + +G+ P+G
Sbjct: 239 VSKAVETKAVDIIEQTTEQGLHSGKSPTGF 268
>gi|407465321|ref|YP_006776203.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048509|gb|AFS83261.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 309
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G SD +V A FY A+ RN +GR + + A+CLY +CR L + + I
Sbjct: 134 LGLSDTVVERASLFYRKAIERNLIRGRTVKSIAAACLYASCRDLEHHRTLTEIAIQFVIK 193
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
E+ Y L + L + VDP ++K ++ G ++KV A IL + +
Sbjct: 194 RKEIARAYRILFRELGFT-----VSVVDPIKSINKIASKI--GSSEKVIRKATQILTAAQ 246
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 183
I G+ P + AA+Y + + G S+ +I + + ++ R+ EF+
Sbjct: 247 DAEIIAGKNPEIMAAAAIYAACVITGELKSQIEIAEAANTSTVSIRNRIQEFKT 300
>gi|448332083|ref|ZP_21521331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445627928|gb|ELY81242.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 354
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 175 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEI 232
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S + EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 233 SAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 284
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL A++Y +AL K +++++ + I E T+ R E
Sbjct: 285 RELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSDVASISEVTIRNRYKEL 344
>gi|448337251|ref|ZP_21526332.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
gi|445626359|gb|ELY79707.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
Length = 308
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 9/174 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ + L + E+ I A + + A + +GR E + A+ +Y ACR +P L
Sbjct: 132 VRRVSSVLELSET--IRDQACQLFRSAQNEDLLQGRSVEAMAAASVYGACRCNGRPRTLD 189
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
D + + + Y L L + + V PS F+ + L + ++
Sbjct: 190 DITESARVEQSRVTNAYTTLNTELGLP-----AQPVTPSAFVPRLASEL--DVSDQIRQR 242
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
AR + + + TTG +PSG A LY + G ++SD+ + ++ T+
Sbjct: 243 ARQLAEASESTGATTGVRPSGFAAACLYKAGREDGRWLTQSDVADVANVSVVTV 296
>gi|407462691|ref|YP_006774008.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046313|gb|AFS81066.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 323
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 10/171 (5%)
Query: 6 NALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY 65
N LN+ E+ + A Y AV + +G + A+ +Y +C+Q P + + S
Sbjct: 143 NKLNMPENAK--EHAAYIYRKAVDKKIIRGNSIPSMMAASVYASCKQLGIPRSVDEISKI 200
Query: 66 LNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDIL 125
NIN +L Y +L + L I +VD + + ++K A IL
Sbjct: 201 TNINRKKLLRSYKRLVKKLEI--------KVDSTGINYVSKISSSLSVSEKTSRLANKIL 252
Query: 126 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 176
K++ I G+ P G+ A++Y+SA+ HG + I + +I T+ K
Sbjct: 253 HDAKQEKIHVGKNPIGVTAASIYLSAINHGEHVPIARIARKTNISTVTIRK 303
>gi|448447532|ref|ZP_21591095.1| transcription initiation factor TFB [Halorubrum litoreum JCM 13561]
gi|445815444|gb|EMA65368.1| transcription initiation factor TFB [Halorubrum litoreum JCM 13561]
Length = 308
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 11/175 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +AL + SD + A + + A + +GR E + A+ +Y ACR + L+
Sbjct: 132 VRRLASALEL--SDSVRDQACQLFRSAQNEDLLRGRSIEAIAAASIYGACRCNGRSRLVD 189
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCD 119
D S + + Y L + L + E V PS+F+ + +D P ++
Sbjct: 190 DVSEMARVAESRVTNAYKTLNEELGLPAEP-----VSPSMFVPRLASDLECP---DEIRQ 241
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
AR + + +TTG P+G A LY + G ++S+ + + +AT+
Sbjct: 242 RARALAEQAEERGVTTGVHPAGFAAACLYKAGHEEGRWLTQSEAADVANASKATV 296
>gi|448352225|ref|ZP_21541016.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|448365467|ref|ZP_21553847.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445631605|gb|ELY84834.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445655006|gb|ELZ07853.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 317
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 127 RNLKYALSEIDRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKE 186
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 187 GIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--D 238
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGL 142
+K V A DI+ + +G+ P+G
Sbjct: 239 VSKAVETKAVDIIEQTTEQGLHSGKSPTGF 268
>gi|448401933|ref|ZP_21571844.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445665991|gb|ELZ18662.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 325
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 146 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEI 203
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S + EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 204 SAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 255
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL A++Y +AL K +++++ ++ I E T+ R E
Sbjct: 256 RELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKEL 315
>gi|407462999|ref|YP_006774316.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046621|gb|AFS81374.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 289
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 7/168 (4%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
I S ++ A Y A+ + +GR + A+ +Y ACR P L D ++ N+
Sbjct: 115 IALSTNVLEKAAYLYRKALEKKLVRGRSISAMIAASIYAACRDTETPRTLKDVADAANVK 174
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
++ Y L L + + V+ + + + +L ++K+ A +L +
Sbjct: 175 RKDIARCYRLLHHELELK-----MPVVNSIQCISRISSKL--ELSEKIKRHAIKVLQEAQ 227
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
+ + G+ P GL ALY++ L HG ++ D+ + + E T+ R
Sbjct: 228 NNKESAGKDPMGLAATALYIACLKHGGSITQRDLAEAAGVTEVTIRNR 275
>gi|399574277|ref|ZP_10768036.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240109|gb|EJN61034.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 324
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + ++ + A Y A+A + GR E V + LY + RQ P L +
Sbjct: 145 RMASALGLPQA--VRETASVIYRRALAEDLLPGRSIEGVATAALYASARQAGTPRSLDEI 202
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ ++ EL Y + + L + ++ DP ++ +F L G + + AR
Sbjct: 203 ASVSRVDKMELTRTYRYVVRELKLE-----IQPADPEQYVPRFASDL--GLSDEAERRAR 255
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
++L + K I +G+ P GL AA+Y +AL K ++S + + +I E T+ R E
Sbjct: 256 ELLRTAKEAGIHSGKSPVGLAAAAVYAAALLTNEKVTQSQVSSVANISEVTIRNRYKEL 314
>gi|329766198|ref|ZP_08257756.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137257|gb|EGG41535.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 262
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 7/175 (4%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G D ++ A Y AV T+GR + ++ LY ACR+ + P L D ++ NI
Sbjct: 90 LGIPDNVIENAAYIYRKAVNSKLTRGRTMASLISASLYAACRENNIPRTLDDIADAGNIE 149
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
L + + L + L Q D S F+ K ++ + +K A DIL +
Sbjct: 150 RRILSRDLRTIIKKLGLK-----LNQYDTSSFISKISNNM--NLKEKTKRDAFDILKRCE 202
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184
IT G+ P A+LY++ + + K S+ + + T+ R+ + T
Sbjct: 203 LKEITAGKHPVAQAAASLYIACMINNEKISQKKFSSEAGVSDVTIRNRVTLIKKT 257
>gi|393795828|ref|ZP_10379192.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 306
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 7/175 (4%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G D ++ A Y AV T+GR + ++ LY ACR+ + P L D ++ NI
Sbjct: 134 LGIPDNVIENAAYIYRKAVNSKLTRGRTMASLISASLYAACRENNIPRTLDDIADAGNIE 193
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
L + + L + L Q D S F+ K ++ + +K A DIL +
Sbjct: 194 RRILSRDLRTIIKKLGLK-----LNQYDTSSFISKISNNM--NLKEKTKRDAFDILKRCE 246
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184
IT G+ P A+LY++ + + K S+ + + T+ R+ + T
Sbjct: 247 LKEITAGKHPVAQAAASLYIACMINNEKISQKKFSSEAGVSDVTIRNRVTLIKKT 301
>gi|433638603|ref|YP_007284363.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448373609|ref|ZP_21557695.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|433290407|gb|AGB16230.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445661561|gb|ELZ14344.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 317
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + + + A Y A+ R+ +GR E V S LY++CR+ P L +
Sbjct: 138 RMVSALGVPKP--VKETASVIYRQALDRDLIRGRSIEGVATSALYMSCRKDDIPRSLEEV 195
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ ++ E+G Y YIADE ++ L+ +P F+ +F L + +V TA
Sbjct: 196 TAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--DVSSEVETTA 247
Query: 122 RDILASMKRDWITTGRKPSGL 142
DI+ + +G+ P+G
Sbjct: 248 IDIIDETTELGLHSGKSPTGF 268
>gi|407465796|ref|YP_006776678.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048984|gb|AFS83736.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 301
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 17/181 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++K+ L I SD ++ A Y A+ + +GR + A+ LY ACR S P L
Sbjct: 124 LNRLKDKLAI--SDSVIEKAAYIYRKALEKGLVRGRSISALMAAALYAACRDTSTPRNLK 181
Query: 61 DFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 116
D NI ++ Y L + L + D + ++ I + + T R
Sbjct: 182 DVEQAANIKRKDIARCYRLLVKELDLKMPVTDSIQCVARIASRIGIAEKTKRY------- 234
Query: 117 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 176
A +L + + ++ G+ P GL AALY+S + +G ++ DI + ++ E T+
Sbjct: 235 ----ATKVLKMAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTEVTIRN 290
Query: 177 R 177
R
Sbjct: 291 R 291
>gi|313127037|ref|YP_004037307.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288496|ref|ZP_21479694.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293402|gb|ADQ67862.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445568881|gb|ELY23456.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 343
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + ES + A Y A+ + GR E + + L+ A R P L +
Sbjct: 155 RMASALGLPES--VRETASVIYRRALEDDLLPGRSIEGIATASLHAAARMAQVPRSLDEV 212
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCDTA 121
++ ++ E Y + + L + +K DP+ +L +F +D +P K+ TA
Sbjct: 213 AHVSRVDEEEFERAYRYIVRELSLE-----IKPADPTEYLPRFASDIDVP---KETERTA 264
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L + K I +G+ P GL AALY +A K ++SD+ + I E T+ R E
Sbjct: 265 RELLENAKTVGIHSGKSPVGLAAAALYAAAQLTNEKVTQSDVSDVTDISEVTIRNRYQEL 324
>gi|161527525|ref|YP_001581351.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160338826|gb|ABX11913.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 306
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 11/180 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ MK L++ D +V A Y V+ T+GR + ++ LY ACR+ + P L
Sbjct: 127 LHSMKTKLSV--PDNVVENAAYIYRKIVSAKLTRGRTMASLISASLYAACRENNIPRTLD 184
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
D + N+ L + + L + L Q D + F+ K ++ + L K+
Sbjct: 185 DIAKAGNVERRILSRDLRTIIKKLGLN-----LNQYDTASFISKISNNMNLKETTKR--- 236
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A DIL + + IT G+ P A+LY+S + +G + S+ + + + T+ R +
Sbjct: 237 GAFDILKRCEEEGITAGKHPVAQAAASLYISCVLNGERVSQKRVSVEAGVSDVTIRNRTV 296
>gi|110669504|ref|YP_659315.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109627251|emb|CAJ53741.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 314
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 13/176 (7%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ AL++ + +I A + A + + +GR E A+C+Y ACR +
Sbjct: 134 IRRLTGALSLPK--QIRDDACSLFRSAQSEDLLRGRSLEGFAAACVYAACRVAGVARTIE 191
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGG-NKKVC 118
+ ++ E A Y L + L + + +DP+ +L +F L LP ++ C
Sbjct: 192 EITDIAKATSAEQRAAYTALNRELGLP-----IGPIDPAQYLPRFASELELPSNIERRAC 246
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
+ I A I GR PSG+ A LY +A G + ++ I + TL
Sbjct: 247 EYISMITA----QGIGAGRNPSGVAAACLYTAARDIGFELTQQTAADIADVTPVTL 298
>gi|308506715|ref|XP_003115540.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
gi|308256075|gb|EFP00028.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
Length = 306
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 18/202 (8%)
Query: 2 RQMKNALN-IGESDEIVHVAK-------RFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
RQM A+N I E E VH+ + R + + +G+ E A+CLY+ACRQ
Sbjct: 102 RQMTTAMNLIREMSERVHLPRNIQESAFRMFKEVLDSGVLRGKNIEAQAAACLYIACRQD 161
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 112
P + ++ E+G C + + + S L+ V + F+ +F L LP
Sbjct: 162 GVPRTFKEICAISRVSKKEIGR-----CFKIIVRNSSTNLEHVTSADFMSRFCGNLYLP- 215
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
N R ++ D + GR P + AA+Y+++ K + +I I E
Sbjct: 216 -NSIQAAATRIAKRAVDMDLV-AGRSPISIAAAAIYMASQASAEKRTAKEIGDIAGAAEV 273
Query: 173 TLMKRLIEFENTDSGSLTIEDF 194
T+ ++ + + L EDF
Sbjct: 274 TI-RQTYKLLYPKAAELFPEDF 294
>gi|167045079|gb|ABZ09742.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8I13]
Length = 304
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 17/181 (9%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++K+ L+I SD ++ A Y A+ + +GR + AS LY ACR S P L
Sbjct: 127 LNRLKDKLSI--SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTSTPRNLK 184
Query: 61 DFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 116
D NI ++ Y L + L + D + ++ I + + T R
Sbjct: 185 DVEQAANIKRKDIARCYRLLVKELDLHMPVTDSVQCVARIASKIGIQEKTKRF------- 237
Query: 117 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 176
A +L + + ++ G+ P GL AALY++ + +G ++ DI + ++ E T+
Sbjct: 238 ----ATKVLKRAQENEVSAGKDPMGLAAAALYLACVKNGEDKTQRDIAEAANVTEVTIRN 293
Query: 177 R 177
R
Sbjct: 294 R 294
>gi|435846952|ref|YP_007309202.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433673220|gb|AGB37412.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY A RQ P L +
Sbjct: 147 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSLDEI 204
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+ Y + + L + ++ DP ++ +F L + + AR
Sbjct: 205 SAVSRVGKDEIARTYRYVIRELGLE-----VQPADPESYVPRFASELEL--SDETERRAR 257
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+L + K + + +G+ P GL AA+Y +AL K +++D+ ++ I E T+ R E
Sbjct: 258 SLLQTAKEEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRYHEL 316
>gi|13541920|ref|NP_111608.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363019|sp|Q979P7.1|TF2B2_THEVO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|14325351|dbj|BAB60255.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 313
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G +I + Y AV +N +GR E + + +Y ACR+ + P L + + +N
Sbjct: 139 LGIPKDIKETSALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEIAKASEVN 198
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
++G Y L + L + L+ P ++ +F ++L +K+ + DI+
Sbjct: 199 KKKIGKAYRHLAKELDLN-----LRPTTPFSYIAQFCNKL--DLDKQAIVISEDIVRQAM 251
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
I++G+ P+G+ AA+Y++++ G ++ +I +I + E T+ R E
Sbjct: 252 SMGISSGKGPTGIAAAAIYIASVKVGKPRTQKEIARISGVTEVTIRNRYKEI 303
>gi|448321877|ref|ZP_21511352.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445602929|gb|ELY56900.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 317
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 14/180 (7%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + +S V Y A+ + +GR E V + LY CRQ+ P L +
Sbjct: 142 RMASALGVPQSTR--EVTSVLYRRALEEDLIRGRSIEGVATAALYAGCRQEGLPRSLEEV 199
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDT 120
+ I E+ Y YI+ E + ++ +DP ++ +F L LP ++V
Sbjct: 200 TEVSRIERIEVSRTYR------YISSELGLEIRPIDPKQYVPRFCSALDLP---QEVEAK 250
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A++I+ D + +GR PSG AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 251 AKEIIDETA-DPLLSGRGPSGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 309
>gi|448396803|ref|ZP_21569251.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445673332|gb|ELZ25893.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 321
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M ++L I S + VA Y A+ + +GR E V S LY ACR + P L +
Sbjct: 144 RMASSLGIPRS--VREVACVMYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + ++ V+P ++ +F L +++V A
Sbjct: 202 SGVSRVERKEIGRTYRYVAQELGLE-----MEPVNPKKYVPRFCSELEL--SEEVQAKAN 254
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 255 EIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRYQE 312
>gi|385804962|ref|YP_005841362.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339730454|emb|CCC41793.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 314
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 13/176 (7%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ AL++ + +I A + A + + +GR E A+C+Y ACR +
Sbjct: 134 IRRLTGALSLPK--QIRDDACSLFRSAQSEDLLRGRSLEGFAAACVYAACRVAGVARTIE 191
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGG-NKKVC 118
+ ++ E A Y L + L + + +DP+ +L +F L LP ++ C
Sbjct: 192 EITDIAKATSAEQRAAYTALNRELGLP-----IGPIDPAQYLPRFASELELPSDIERRAC 246
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
+ ++ + I GR PSG+ A LY +A G + ++ I + TL
Sbjct: 247 E----YISMITAQGIGAGRNPSGVAAACLYTAARDIGFELTQQTAADIADVTPVTL 298
>gi|448633189|ref|ZP_21674096.1| transcription initiation factor IIB 5 [Haloarcula vallismortis ATCC
29715]
gi|445752153|gb|EMA03581.1| transcription initiation factor IIB 5 [Haloarcula vallismortis ATCC
29715]
Length = 306
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 9/182 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ + L + ES + A +F+ A + + +GR E + A+ +Y CR +P LL
Sbjct: 132 VRRLASTLELSES--VRDQACQFFRSAQSEDLLRGRSIEAIAAASVYGTCRCNQRPLLLE 189
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
D + + + Y L + L + + P+ F+ + L + +
Sbjct: 190 DIVDAARVESSRVTNAYRTLNRELKLP-----TPPMRPTSFIPRLISELEL--DHDIQRR 242
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A ++ A + +T G +P+G+ A +Y++A G ++S + + TL R E
Sbjct: 243 ANELAACAEETALTNGCQPTGVAAACVYLAAQEQGALITQSTVASAAEVSVVTLRSRRDE 302
Query: 181 FE 182
+
Sbjct: 303 LQ 304
>gi|449549470|gb|EMD40435.1| hypothetical protein CERSUDRAFT_111033 [Ceriporiopsis subvermispora
B]
Length = 351
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 11/167 (6%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
I +AK+ Y + +G+ + V A+C+++ACRQ P + N +++ LG
Sbjct: 151 ISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFREICNLTHVSKKVLGQ 210
Query: 76 VYLQLCQVLYIAD-------ESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILAS 127
Y L Q + S P L ++ + L LP + +C D++
Sbjct: 211 CYKALEQAFNLTPGASQDRHSSTPSGTTGPEDLLIRYCNHLDLPPNVQPIC---ADVIKK 267
Query: 128 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
+ I GR P + G A+Y + G DI + + E T+
Sbjct: 268 ARELGIADGRSPVSIAGGAIYFTCHLLGKVKPARDISSVAGVSEGTI 314
>gi|383625409|ref|ZP_09949815.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|448700388|ref|ZP_21699496.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|445779928|gb|EMA30843.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
Length = 321
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 17/150 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 131 RNLKYALSEIDRMVSALGVPTPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKE 190
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L G
Sbjct: 191 DIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSELDVG 244
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGL 142
K V A +I+ + +G+ P+G
Sbjct: 245 --KDVETKAVEIIEQTTEQGLHSGKSPTGF 272
>gi|448613121|ref|ZP_21663001.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740018|gb|ELZ91524.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 345
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + Y A+ + GR E V S LY A R P L +
Sbjct: 166 RMASALGLPEN--VRETTSVIYRRALNDDLLPGRSIEGVATSSLYAAARMADTPRSLDEI 223
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ + E+ Y + + L + +K DP ++ +F L G + + AR
Sbjct: 224 TSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASEL--GISDESERRAR 276
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+L + K + +G+ P GL AA+Y ++L K +++++ + +I E T+ R E
Sbjct: 277 QLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSDVANISEVTIRNRYHEL 335
>gi|448306378|ref|ZP_21496284.1| transcription initiation factor TFB [Natronorubrum bangense JCM
10635]
gi|445598233|gb|ELY52297.1| transcription initiation factor TFB [Natronorubrum bangense JCM
10635]
Length = 332
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 24/201 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K+AL +G D + A Y A+ N GR E + + L A RQ
Sbjct: 138 RNLKHALGEIDRMGSALGIPDATLETASVIYRRALEENLLPGRSIEGMATAALNAAVRQT 197
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P + + + I+ E Y L + L + + DP +L ++ L
Sbjct: 198 GVPRSIDELATVSRIDYLEAARAYRYLVRELELP-----MAPPDPLEYLPRYASAL---- 248
Query: 114 NKKVCDTAR---DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 170
+ +T R D+L + +G+ P GL AA+Y + G ++ D+ + +
Sbjct: 249 -EITAETERRAHDLLEGGMEAGLHSGKHPVGLAAAAIYAGSRLTGETLTQDDVSDAIDVS 307
Query: 171 EATLMKR---LIEFENTDSGS 188
+ T+ R L+E E T S S
Sbjct: 308 KVTIRNRYQELLEHEITTSDS 328
>gi|448324011|ref|ZP_21513453.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|445619909|gb|ELY73423.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 323
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 17/150 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 133 RNLKYALSEIDRMVSALGVPNPVKETASVIYRRALQQDLIRGRSIEGVATSALYTACRKE 192
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + + ++ E+G Y YIADE + L+ +P F+ +F L
Sbjct: 193 DIPRSLEEVTAVSRVDQREIGRTY------RYIADELGINLEPTNPRQFVPRFCSEL--D 244
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGL 142
+K V A DI+ + +G+ P+G
Sbjct: 245 VDKDVETKAIDIIDETTEKGLHSGKSPTGF 274
>gi|118576996|ref|YP_876739.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195517|gb|ABK78435.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 304
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 9/174 (5%)
Query: 6 NALNI--GESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 63
NA+ I G + V A Y AV T+GR + A+ LY ACR+ P L D +
Sbjct: 128 NAMGIKLGVPEPAVEKAAYIYRKAVGEKLTRGRTVSSLIAASLYAACRESGIPRTLDDMA 187
Query: 64 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 123
N+ L + + L ++ L Q D S F+ K + L G +K A D
Sbjct: 188 RVSNVERRILSRDLRTMLRKLGMS-----LTQYDTSSFITKIANNL--GLKEKTKRDAVD 240
Query: 124 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
+L + IT G+ P AALY++ + +G S+ + + + T+ R
Sbjct: 241 LLRRAEEIKITAGKNPVAQAAAALYIACMNNGEGISQKSFSREAGVSDVTVRNR 294
>gi|448528868|ref|ZP_21620248.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710316|gb|ELZ62135.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 354
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 15/188 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A++ N GR E V + LY A RQ
Sbjct: 165 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQV 224
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L +F+ + EL Y + + L + ++ DP+ ++ +F RL
Sbjct: 225 GNPRSLDEFTAVSRVEKMELTRTYRYVVRELGLR-----VQPADPTSYVPRFVSRLDL-- 277
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR++LA IT+G+ P GL AA+Y +AL K ++S + + + E T
Sbjct: 278 SDETERRARELLADAASAGITSGKSPVGLAAAAVYAAALLSNEKVTQSQVSDVADVSEVT 337
Query: 174 LMKRLIEF 181
+ R E
Sbjct: 338 IRNRYKEL 345
>gi|448329811|ref|ZP_21519107.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613430|gb|ELY67131.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 319
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 17/150 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 129 RNLKYALSEIDRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKE 188
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 189 DIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--D 240
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGL 142
+K V A DI+ + +G+ P+G
Sbjct: 241 VDKDVETKAIDIIDRTTEQGLHSGKSPTGF 270
>gi|448562505|ref|ZP_21635463.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445718823|gb|ELZ70507.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 332
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 9/187 (4%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY + R P L +
Sbjct: 153 RMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAGTPRSLDEL 210
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ EL Y + + L + +K DP ++ +F L G + + AR
Sbjct: 211 EKVSRVDKMELTRTYRYVVRELKLE-----IKPADPEQYVPRFASEL--GLSDEAERQAR 263
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
+L K I +G+ P GL AA+Y +AL K ++S++ + I E T+ R E
Sbjct: 264 QLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELL 323
Query: 183 NTDSGSL 189
G+L
Sbjct: 324 EVQDGTL 330
>gi|448305704|ref|ZP_21495633.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445588162|gb|ELY42408.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 325
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 15/196 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G + A Y A+ + GR E V S LY A RQ
Sbjct: 136 RNLKQALGEIDRMASALGLPKNVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQA 195
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + + + E+ Y + + L + ++ DP ++ +F L
Sbjct: 196 GTPRSLDEIAAVSRVEKDEIARTYRYVIRELGLE-----VQPADPESYVPRFASDL--DL 248
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR +L+S K I +G+ P GL AA+Y +AL K +++D+ + I E T
Sbjct: 249 SDETERRARSLLSSAKEQGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVT 308
Query: 174 LMKRLIEFENTDSGSL 189
+ R E + G L
Sbjct: 309 IRNRYHELLEAEDGGL 324
>gi|386875662|ref|ZP_10117821.1| transcription factor TFIIB repeat protein [Candidatus
Nitrosopumilus salaria BD31]
gi|386806418|gb|EIJ65878.1| transcription factor TFIIB repeat protein [Candidatus
Nitrosopumilus salaria BD31]
Length = 306
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Query: 18 HVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVY 77
H A F IA A+ GR T + + +Y+ACR + P L D ++ NI +L Y
Sbjct: 138 HTAYLFRKIA-AKKILTGRSTSGILCATIYIACRSTNIPRTLQDVADAGNIKKRDLQRTY 196
Query: 78 LQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN--KKVCDTARDILASMKRDWITT 135
L + L I ES DP +F R+ N +K A IL + I+T
Sbjct: 197 RFLVKELQINPES-----YDP----IEFVTRIATAANISEKTERLAFKILRISAKKNIST 247
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSL 189
+ P G+ AA+ ++ + K S+ I K+ I T+ R E + G +
Sbjct: 248 SKNPIGMAAAAVNLAVTINHEKISQVKISKVSGISSVTIRDRTKEIKERIGGEI 301
>gi|448393759|ref|ZP_21567818.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445663362|gb|ELZ16114.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 318
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 127 RNLKYALSEIDRMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKE 186
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L G
Sbjct: 187 DIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSELDVG 240
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGL 142
K V A +I+ + +G+ P+G
Sbjct: 241 --KDVETKAVEIIDQTTEQGLHSGKSPTGF 268
>gi|448399559|ref|ZP_21570819.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445668576|gb|ELZ21203.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 319
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 129 RNLKYALSEIDRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKE 188
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L G
Sbjct: 189 GIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSELDVG 242
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGL 142
K V A +I+ + +G+ P+G
Sbjct: 243 --KDVETKAIEIIDQTTDQGLHSGKSPTGF 270
>gi|448312070|ref|ZP_21501821.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445603031|gb|ELY57000.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 323
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M ++L I S + VA Y A+ + +GR E V S LY ACR + P L +
Sbjct: 146 RMASSLAIPRS--VREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 203
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+G Y + Q L + + VDP ++ +F L +++V A
Sbjct: 204 ATVSRVERKEIGRTYRYVAQELGLE-----MAPVDPKKYVPRFCSDLEL--SEEVTAKAN 256
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 257 EIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 314
>gi|429193443|ref|YP_007179121.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429137661|gb|AFZ74672.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 340
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 17/150 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 150 RNLKYALSEIDRMVSALGVPNPVKETASVIYRRALQQDLIRGRSIEGVATSALYTACRKE 209
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + + ++ E+G Y YIADE + L+ +P F+ +F L
Sbjct: 210 DIPRSLEEVTAVSRVDQREIGRTY------RYIADELGINLEPTNPRQFVPRFCSEL--D 261
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGL 142
+K V A DI+ + +G+ P+G
Sbjct: 262 VDKDVETKAIDIIDETTEKGLHSGKSPTGF 291
>gi|448730615|ref|ZP_21712921.1| transcription initiation factor IIB [Halococcus saccharolyticus DSM
5350]
gi|445793284|gb|EMA43867.1| transcription initiation factor IIB [Halococcus saccharolyticus DSM
5350]
Length = 283
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 9/166 (5%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G SD + A + A + +GR E A+ +Y CR L + +
Sbjct: 117 LGLSDSVRDRACVLFESAQDADLLRGRSLEGFAAATIYAVCRTDGVSRTLAEIVTVAKAS 176
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASM 128
EL A Y L + L + +DP+ +L +F +L LP G V AR+++A
Sbjct: 177 RDELTAAYDALNRDLGLP-----TGPIDPTEYLARFASQLGLPHG---VEARARELVAEG 228
Query: 129 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
+ + +GR PSG+ A LY +A G ++ ++ + TL
Sbjct: 229 RDRGLVSGRNPSGVAAACLYTAATETGHGLTQQAAAEVADVTPVTL 274
>gi|289580210|ref|YP_003478676.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281448|ref|ZP_21472754.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289529763|gb|ADD04114.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445578870|gb|ELY33270.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 329
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY A RQ P L +
Sbjct: 150 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 207
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S ++ EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 208 SAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 259
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL A +Y +AL K +++++ ++ I E T+ R E
Sbjct: 260 RELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKEL 319
>gi|432328340|ref|YP_007246484.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135049|gb|AGB04318.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 313
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 7/172 (4%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G ++ A Y AV +N +GR E + A+ +Y ACR+ P L + + +N
Sbjct: 139 MGLPKDVRETAAIIYRKAVEKNLIRGRSIESIVAASIYAACRKVGMPRTLDEVAKASELN 198
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
++G Y L + L + LK + ++ +F +L +K V + A +I+
Sbjct: 199 KKKIGRAYRHLTKELNLN-----LKPTTANSYITQFCSKLRL--DKNVVNKAEEIVQKAT 251
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
IT+G+ P+G+ AA+Y++A ++ +I ++ + E T+ R E
Sbjct: 252 DVGITSGKGPTGVAAAAIYIAANMLNEPRTQKEIAEVAGVTEVTIRNRYKEI 303
>gi|402226301|gb|EJU06361.1| TFIIB-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 358
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
I AK+ Y KG+R + + A+C+++ACRQ P + N +N LG
Sbjct: 152 ISDTAKQLYKRVEEDRILKGKRMDAIVAACIFIACRQGHVPRTFREICNITKVNKKALGQ 211
Query: 76 VYLQLCQVLYI---ADESNVLKQVDPSI-----------FLHKFTDRL-LPGGNKKVCDT 120
Y + + ++ +VD + + +F + L LP ++ C
Sbjct: 212 CYKAMEAYFRLNVSGGATSSTNRVDIHLAGSGSKASAEELIPRFCNHLGLPVSLERSC-- 269
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
I+ + + + GR P + G A+Y + G DI ++V++ E+T+
Sbjct: 270 -VQIIVNAREQGVNAGRSPISIAGGAIYFTTHLLGQAKHARDISRVVNVSESTI 322
>gi|389847221|ref|YP_006349460.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448614833|ref|ZP_21663861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244527|gb|AFK19473.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445752920|gb|EMA04339.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 331
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 9/187 (4%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A R P L +
Sbjct: 152 RMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMADTPRSLDEL 209
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ EL Y + + L + +K DP ++ +F L + + AR
Sbjct: 210 EKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--DLSDEAERQAR 262
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
+L K I +G+ P GL AA+Y +AL K ++S++ K+ I E T+ R E
Sbjct: 263 QLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSKVADISEVTIRNRYKELL 322
Query: 183 NTDSGSL 189
GSL
Sbjct: 323 EVQDGSL 329
>gi|448336354|ref|ZP_21525454.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629246|gb|ELY82538.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 321
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 11/179 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M ++L I S + VA Y A+ + +GR E V S LY ACR + P L +
Sbjct: 144 RMASSLAIPRS--VREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ + E+G Y Y+A E N+ ++ V+P ++ +F L +V A
Sbjct: 202 AAVSRVERKEIGRTY------RYVAQELNLEMEPVNPKKYVPRFCSELELSEEVQV--KA 253
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 254 NEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRYQE 312
>gi|448321090|ref|ZP_21510571.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445604490|gb|ELY58438.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 324
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 11/187 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY A RQ P L +
Sbjct: 146 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSLDEI 203
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
+ + E+ Y + + L + ++ DP ++ +F L L ++ A
Sbjct: 204 AAVSRVEKDEIARTYRYVIRELGLE-----VQPADPESYVPRFASELELSDETER---RA 255
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R +L + K + + +G+ P GL AA+Y +AL K +++D+ ++ I E T+ R E
Sbjct: 256 RQLLQTAKEEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRYHEL 315
Query: 182 ENTDSGS 188
+ G+
Sbjct: 316 LEAEGGA 322
>gi|397772462|ref|YP_006540008.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448342670|ref|ZP_21531616.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397681555|gb|AFO55932.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445625065|gb|ELY78435.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 321
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 11/179 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M ++L I S + VA Y A+ + +GR E V S LY ACR + P L +
Sbjct: 144 RMASSLAIPRS--VREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ + E+G Y Y+A E N+ ++ V+P ++ +F L +V A
Sbjct: 202 AAVSRVERKEIGRTY------RYVAQELNLEMEPVNPKKYVPRFCSELELSEEVQV--KA 253
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 254 NEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRYQE 312
>gi|448585353|ref|ZP_21647746.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445726053|gb|ELZ77670.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 332
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 9/187 (4%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY + R P L +
Sbjct: 153 RMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAGTPRSLDEL 210
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ EL Y + + L + +K DP ++ +F L G + + AR
Sbjct: 211 EKVSRVDKMELTRTYRYVVRELKLE-----IKPADPEQYVPRFASEL--GLSDEAERQAR 263
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
+L K I +G+ P GL AA+Y +AL K ++S++ + I E T+ R E
Sbjct: 264 KLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELL 323
Query: 183 NTDSGSL 189
G+L
Sbjct: 324 EVQDGTL 330
>gi|448718282|ref|ZP_21703005.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445784444|gb|EMA35255.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 325
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 135 RNLKYALSEIDRMVSALGVPNPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKE 194
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L G
Sbjct: 195 DIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSELDVG 248
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGL 142
K + A +I+ + +G+ P+G
Sbjct: 249 --KDIETKAVEIIDRTTEQGLHSGKSPTGF 276
>gi|448369498|ref|ZP_21556050.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445650673|gb|ELZ03589.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 329
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY A RQ P L +
Sbjct: 150 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 207
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S ++ EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 208 SAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 259
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL A +Y +AL K +++++ ++ I E T+ R E
Sbjct: 260 RELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKEL 319
>gi|448309192|ref|ZP_21499054.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
gi|445591113|gb|ELY45322.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
Length = 316
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 9/134 (6%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G + A Y A+ ++ +GR E V S LY ACR++ P L + + ++
Sbjct: 143 LGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTAVSRVD 202
Query: 70 VYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 128
E+G Y YIADE ++ L+ +P F+ +F L +K V A +I+
Sbjct: 203 QREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--NVDKDVETKAVEIIDQT 254
Query: 129 KRDWITTGRKPSGL 142
+ + +G+ P+G
Sbjct: 255 TQQGLHSGKSPTGF 268
>gi|345007074|ref|YP_004809926.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344322700|gb|AEN07553.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 304
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +AL + E+ I A + + A + +GR E + A+ +Y ACR LL
Sbjct: 132 VRRIVSALELSEA--IRDQACQLFRSAQNEDLLRGRSIEAIAAASVYGACRCNGLSRLLD 189
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCD 119
+ S + + Y L + L + E V PS+F+ + +D P ++
Sbjct: 190 EVSEMARVEESRVANAYKTLNEELGLPAEP-----VSPSMFVPRLASDLECPDETRQ--- 241
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
AR + + +TTG P+G A LY + G ++SD+ + ++ T+
Sbjct: 242 RARTLAEQAEERGVTTGVHPAGFAAACLYKAGQEQGKWVTQSDVAAVGNVTPTTI 296
>gi|448358672|ref|ZP_21547349.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445645254|gb|ELY98260.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 329
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY A RQ P L +
Sbjct: 150 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 207
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S ++ EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 208 SAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 259
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL A +Y +AL K +++++ ++ I E T+ R E
Sbjct: 260 RELLDSARKEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKEL 319
>gi|386875751|ref|ZP_10117910.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806507|gb|EIJ65967.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 304
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 15/166 (9%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
++ A Y A+ + +GR + A+ LY ACR P L D S+ N+ ++
Sbjct: 138 VLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLKDVSDAANVKRKDIAR 197
Query: 76 VYLQLCQVLY----IADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRD 131
Y L L + D + ++ + + + T R A +L +
Sbjct: 198 CYRLLHHELELKMPVVDSIQCIARISSKLEISEKTKRY-----------AVKVLKDAQER 246
Query: 132 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
+ G+ P GL ALY+S + +G+ ++ D+ + + E T+ R
Sbjct: 247 KESAGKDPMGLAATALYLSCVKNGVSITQRDLAEAAGVTEVTIRNR 292
>gi|448361954|ref|ZP_21550567.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445649634|gb|ELZ02571.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 329
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY A RQ P L +
Sbjct: 150 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 207
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S ++ EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 208 SAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 259
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL A +Y +AL K +++++ ++ I E T+ R E
Sbjct: 260 RELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKEL 319
>gi|448318045|ref|ZP_21507583.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445600803|gb|ELY54805.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 319
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 37/213 (17%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 129 RNLKYALSEIDRMVSALGVPKPVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKE 188
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 189 GIPRSLEEVTGVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--D 240
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+K V A +I+ + +G+ P+G AA+Y + L +CE
Sbjct: 241 VDKNVESKAIEIIDETTTQGLHSGKSPTGFAAAAIYAAGL----------------LCEE 284
Query: 173 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGV 205
T+ +R + D+ T+ R +E E +
Sbjct: 285 TIPQRAV----ADTAQTTVVTVRNRYREQLEAI 313
>gi|448352869|ref|ZP_21541649.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445641511|gb|ELY94588.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 329
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY A RQ P L +
Sbjct: 150 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 207
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S ++ EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 208 SAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 259
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL A +Y +AL K +++++ ++ I E T+ R E
Sbjct: 260 RELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKEL 319
>gi|126466031|ref|YP_001041140.1| transcription initiation factor IIB [Staphylothermus marinus F1]
gi|126014854|gb|ABN70232.1| Transcription initiation factor IIB (TFIIB) [Staphylothermus
marinus F1]
Length = 309
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+ +Y ACR+ P L + + + + ++ Y
Sbjct: 144 AARIYRRAVEKGLVRGRSIESVIAAAIYAACRELKIPRTLDEIAKHTKSSRKDIARCYRL 203
Query: 80 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 139
L + L I +++ DP F+ + L G+ V A +IL + +T G P
Sbjct: 204 LLKELDIKVQTS-----DPIDFIPRIAHALNLSGS--VMKKAAEILHRARSLGVTAGNDP 256
Query: 140 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+GL AA+Y++A G + ++ +I + + E T+ R E
Sbjct: 257 AGLAAAAVYIAAQLSGERRTQKEIAHVAGVTEVTVRNRYKEL 298
>gi|448591526|ref|ZP_21651014.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445733500|gb|ELZ85069.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 331
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 10/188 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A R P L +
Sbjct: 152 RMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATASLYAAARMADTPRSLDEL 209
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ EL Y + + L + +K DP ++ +F L G + + AR
Sbjct: 210 EKVSRVEKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--GLSDEAERQAR 262
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE-F 181
++L K + +G+ P GL AA+Y +AL K ++S++ ++ I E T+ R E
Sbjct: 263 ELLRGAKETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSEVADISEVTIRNRYKELL 322
Query: 182 ENTDSGSL 189
E DS L
Sbjct: 323 EVQDSNML 330
>gi|448564209|ref|ZP_21635910.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445717196|gb|ELZ68917.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 309
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 9/174 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ AL + ES A R + A + + +GR E + A+ +Y CR L
Sbjct: 133 VRRIAGALELSESTR--DQACRLFRSAQSEDLLRGRSIEAIAAASVYGICRCNRLMRTLE 190
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ ++ + + Y L L + V P F+ + L G +++
Sbjct: 191 EIADLARVENQRVVNAYKTLNTELGLP-----TPPVRPRDFIPRLVSEL--GVPEEISRR 243
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
AR I ++ +TTG P+G GA LY H L +SD+ + ++ AT+
Sbjct: 244 ARSIAMEAEQLGVTTGCNPAGFAGACLYWVGCDHALHLRQSDVAQAANVSAATI 297
>gi|322708771|gb|EFZ00348.1| transcription initiation protein [Metarhizium anisopliae ARSEF 23]
Length = 347
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A+N+G++ + + AK + + F KG+ E V A C+++ACRQ + P + N
Sbjct: 135 AINMGQN--VSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLT 192
Query: 67 NINVYELGAVYLQLCQVLYIADES---------NVLKQVDPSI----FLHKFTDRLLPGG 113
+++ E+G V+ QL + L ++ V + S+ ++ +L
Sbjct: 193 SVSKKEVGRVFKQLQKFLQKLQDTEGEGATGLNTVTNYENTSVGAEDLCSRYVSQLGFKN 252
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+K+ +RD+ GR P + A +Y++ G S I K + + T
Sbjct: 253 QQKISKISRDLAEKANDISALAGRSPLSVAAACIYMACHLVGEPRSSLPIAKQAGVSDGT 312
Query: 174 L 174
+
Sbjct: 313 V 313
>gi|448448382|ref|ZP_21591195.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445814798|gb|EMA64756.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 380
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 15/188 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A++ N GR E V + LY A RQ
Sbjct: 191 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQV 250
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L +F+ + EL Y + + L + ++ DP+ ++ +F RL
Sbjct: 251 GNPRSLDEFTAVSRVEKMELTRTYRYVVRELGLR-----VQPADPTSYVPRFVSRL--DL 303
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+++ AR++L IT+G+ P GL AA+Y +AL K ++S++ + + E T
Sbjct: 304 SEETERRARELLEDAANAGITSGKSPVGLAAAAVYAAALLSNEKVTQSEVSDVADVSEVT 363
Query: 174 LMKRLIEF 181
+ R E
Sbjct: 364 IRNRYKEL 371
>gi|448726818|ref|ZP_21709208.1| transcription initiation factor TFB 7 [Halococcus morrhuae DSM
1307]
gi|445793379|gb|EMA43957.1| transcription initiation factor TFB 7 [Halococcus morrhuae DSM
1307]
Length = 202
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 11/175 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R+M AL G D I A + A + +GR E A+ +Y CR + L
Sbjct: 29 VRRMVGAL--GLPDSIRDRACVLFESAQNEDLLRGRSLEGFAAAAVYAVCRTDALSRTLA 86
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
+ EL A Y L + L + +DP +L +F ++L LP G ++
Sbjct: 87 EIGAVAKATRDELTAAYDALNRELGLPT-----GPIDPEEYLARFANQLELPNGIER--- 138
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
AR ++ +T GR PSG+ A LY +A H ++ + + TL
Sbjct: 139 RARALVEKSHELGLTNGRNPSGVAAACLYTAATEHDHALTQQSAADVAGVTSVTL 193
>gi|448727279|ref|ZP_21709645.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
gi|445791493|gb|EMA42133.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
Length = 326
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 15/188 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V S LY A RQ
Sbjct: 136 RNLKQALGEIDRMASALGLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQA 195
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + + + EL Y + + L + ++ DP+ ++ +F L
Sbjct: 196 GTPRSLDEIATVSRVGKMELTRTYRYVVRELGLE-----IQPADPASYVPRFASDLEL-- 248
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+++ AR +L + K + I +G+ P GL AA+Y +AL K ++ + ++ I E T
Sbjct: 249 SEEAERRARQLLETAKDEGIISGKSPVGLAAAAVYAAALLTNEKVTQGAVSEVADISEVT 308
Query: 174 LMKRLIEF 181
+ R E
Sbjct: 309 IRNRYKEL 316
>gi|322699177|gb|EFY90941.1| transcription initiation protein [Metarhizium acridum CQMa 102]
Length = 347
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A+N+G++ + + AK + + F KG+ E V A C+++ACRQ + P + N
Sbjct: 135 AINMGQN--VSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLT 192
Query: 67 NINVYELGAVYLQLCQVLYIADES---------NVLKQVDPSI----FLHKFTDRLLPGG 113
+++ E+G V+ QL + L ++ V + S+ ++ +L
Sbjct: 193 SVSKKEVGRVFKQLQKFLQKLQDTEGEGATGLNTVTNYENTSVGAEDLCSRYVSQLGFKS 252
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+K+ +RD+ GR P + A +Y++ G S I K + + T
Sbjct: 253 QQKISKISRDLAEKANDISALAGRSPLSVAAACIYMACHLVGEPRSSLPIAKQAGVSDGT 312
Query: 174 L 174
+
Sbjct: 313 V 313
>gi|284176274|ref|YP_003406551.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284017931|gb|ADB63878.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 318
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 127 RNLKYALSEIDRMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKE 186
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L G
Sbjct: 187 DIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSELDVG 240
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGL 142
K V A +I+ + +G+ P+G
Sbjct: 241 --KDVETKAVEIIDRTTDQGLHSGKSPTGF 268
>gi|448303866|ref|ZP_21493812.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445592493|gb|ELY46680.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 296
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ L++ D A + A + +GR E A+ +Y CR +S P +
Sbjct: 120 IRRINTGLSL--PDSAREQACTLFKSAQSEGLFQGRSLEGFAAAAIYATCRTRSNPRTID 177
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ + + +EL A Y L + L + +DP+ +L ++ +L G +
Sbjct: 178 EITTVARADRHELTAAYDALNRELGLP-----TGPIDPTGYLPRYASKL--GLETAIERR 230
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSA 151
AR+ L + ++ + +GR PSG+ A LY +A
Sbjct: 231 AREHLTVLLQEGLISGRNPSGVAAACLYEAA 261
>gi|392568456|gb|EIW61630.1| transcription initiation factor IIB [Trametes versicolor FP-101664
SS1]
Length = 351
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 11/167 (6%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
I +AK+ Y + +G+ E V A+C+++ACRQ P + N +++ LG
Sbjct: 151 ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTHVSKKVLGQ 210
Query: 76 VYLQLCQVLYIADESNVLKQVD-PS------IFLHKFTDRL-LPGGNKKVCDTARDILAS 127
Y L Q + ++ + ++ PS L ++ + L LP + +C DI+
Sbjct: 211 CYKALEQAFNLTPGASQDRHLNAPSGTTGAEDLLVRYCNHLDLPPNVQPICG---DIIVK 267
Query: 128 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
+ I GR P + G A+Y + S +I + + E T+
Sbjct: 268 ARELGIADGRSPVSIAGGAIYFTCCLLDKPKSVKEISTVAGVSEGTI 314
>gi|448627270|ref|ZP_21671883.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445759099|gb|EMA10386.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 322
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + ++ + A Y A+ + GR E V S LY A R P L +
Sbjct: 145 RMASALGLPQN--VRETASVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEM 202
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + EL Y + + L + ++ DP +L +F L +++ AR
Sbjct: 203 ARVSRVEKMELTRTYRYIVRELSLE-----VQPADPEHYLPRFISDLEL--SEETQRQAR 255
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
D++ ++ + +G+ P G+ AA+Y +AL K ++S + + I E T+ R E
Sbjct: 256 DLVEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVADISEVTIRNRYKEL 314
>gi|448470297|ref|ZP_21600440.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445808271|gb|EMA58344.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 237
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 88/194 (45%), Gaps = 15/194 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A++ N GR E V + LY A RQ
Sbjct: 48 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQA 107
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L +F+ ++ EL Y + + L + ++ DP ++ +F RL
Sbjct: 108 GNPRSLDEFTAVSRVDKMELTRTYRYVIRELKLE-----IQPADPGSYVPRFVSRL--DL 160
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+++ ARD+L K+ IT+G+ P GL +A+Y +AL K ++S + + I E T
Sbjct: 161 SEETQRLARDLLDGAKQAGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSAVADISEVT 220
Query: 174 LMKRLIEFENTDSG 187
+ R E N G
Sbjct: 221 IRNRYKELLNASEG 234
>gi|448736840|ref|ZP_21718923.1| transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
gi|445805608|gb|EMA55811.1| transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
Length = 210
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 11/176 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + ES + A Y A+ N GR E V ++ LY A RQ S P L +
Sbjct: 30 RMASALGVPES--VRETAGVIYRRALEENLLPGRSVEGVASAALYAATRQASIPRSLDEI 87
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
N + + Y Y++ E N+ + DP+ ++ +F +L G ++V A
Sbjct: 88 GNVSRVETVAIMRTY------RYVSRELNLTIPPSDPTDYVPRFASKL--GAPEEVERAA 139
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
RDIL +G+ P GL AALY +L ++ +I + +I + T+ R
Sbjct: 140 RDILEEAIDAGYPSGKSPVGLAAAALYAGSLITNNNLTQKEIGEAANISKVTIRNR 195
>gi|448704008|ref|ZP_21700548.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445796624|gb|EMA47125.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 344
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 15/188 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G S+ A Y AV GR E + + LY A RQ+
Sbjct: 150 RNLKQALGELERMASALGLSEPCRETAAVIYRRAVEEELLPGRSIEAMTTASLYAAARQQ 209
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P F + ++ Y L L + + +P +L +F L
Sbjct: 210 GTPRTFSAFESVSRVDDESTKRAYRYLSSELELE-----IAPPEPEQYLRQFASDLAVSD 264
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ ARD+L + K + + G+ P+GL AA+Y + + ++ I + + + T
Sbjct: 265 ETERL--ARDVLEAAKAEELHIGKSPAGLTAAAIYAAGRLTNDRVTQETIDETTGVSKFT 322
Query: 174 LMKRLIEF 181
+ R E
Sbjct: 323 VRNRYREL 330
>gi|448315422|ref|ZP_21505070.1| transcription initiation factor TFB [Natronococcus jeotgali DSM
18795]
gi|445611595|gb|ELY65342.1| transcription initiation factor TFB [Natronococcus jeotgali DSM
18795]
Length = 319
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 88/180 (48%), Gaps = 14/180 (7%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + ++ VA Y A+ + +GR E V + LY CR++ P L +
Sbjct: 143 RMASALGVPR--DVREVASVIYRRALDEDLIRGRSIEGVATAALYAGCRREGIPRSLEEI 200
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDT 120
++ + E+ Y Y+++E + L +DP ++ +F+ +L LP ++V
Sbjct: 201 ADVSRVERLEISRTYR------YVSNELGLELLPIDPKQYVPRFSSKLDLP---QEVKVK 251
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +I+ D + +GR PSG AA+Y +AL K ++ + ++ + E T+ R E
Sbjct: 252 ANEIIDETA-DPLLSGRGPSGFAAAAIYAAALLCNEKRTQKAVAEVAQVTEVTIRNRYQE 310
>gi|448343761|ref|ZP_21532680.1| transcription initiation factor TFB [Natrinema gari JCM 14663]
gi|445622394|gb|ELY75852.1| transcription initiation factor TFB [Natrinema gari JCM 14663]
Length = 308
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +AL + SD + A + + A + +GR E + A+ +Y ACR L+
Sbjct: 132 VRRLASALEL--SDSVRDQACQLFRSAQNEDLLRGRSIEGIAAASVYGACRCNGLSRLVD 189
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCD 119
D S + + Y L + L + E V PS+F+ + +D P ++
Sbjct: 190 DVSEMARVAESRVTNAYKTLNEELGLPAEP-----VSPSMFVPRLASDLECP---DEIRQ 241
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
AR + + +TTG P+G A LY + G ++S+ + + +AT+
Sbjct: 242 RARALAEQAEERGVTTGVHPAGFAAACLYKAGREEGRWLTQSEAADVANASKATV 296
>gi|448302684|ref|ZP_21492657.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445595257|gb|ELY49368.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 316
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 127 RNLKYALSEIDRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKE 186
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 187 DIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--D 238
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGL 142
+K V A +I+ + + +G+ P+G
Sbjct: 239 VDKDVETKAVEIIDETTQQGLHSGKSPTGF 268
>gi|354612563|ref|ZP_09030512.1| Transcription factor TFIIB cyclin-related protein [Halobacterium
sp. DL1]
gi|353189056|gb|EHB54569.1| Transcription factor TFIIB cyclin-related protein [Halobacterium
sp. DL1]
Length = 201
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 11/175 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +AL + SD + A + + A + +GR E + A+ +Y ACR LL
Sbjct: 25 VRRLASALEL--SDSVRDQACQLFRSAQTEDLLRGRSIEAIAAASVYGACRCNRLSRLLD 82
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCD 119
+ S + + Y L + L + ES V PS+F+ + +D P ++
Sbjct: 83 EVSEMARVEESRVANAYKTLNEELGLPAES-----VSPSMFVPRLASDLECPDAIRQ--- 134
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
AR + + +TTG P+G A LY +A G ++++ + + AT+
Sbjct: 135 RARTLAEQAEELGVTTGVHPAGFAAACLYKAAREEGRWLTQTEAADVANASTATV 189
>gi|448739366|ref|ZP_21721381.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
gi|445799961|gb|EMA50330.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
Length = 326
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 15/188 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V S LY A RQ
Sbjct: 136 RNLKQALGEIDRMASALGLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQA 195
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + + + EL Y + + L + ++ DP+ ++ +F L
Sbjct: 196 GTPRSLDEIATVSRVGKMELTRTYRYVVRELGLE-----IQPADPASYVPRFASDLEL-- 248
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+++ AR +L + K + I +G+ P GL AA+Y +AL K ++ + ++ I E T
Sbjct: 249 SEEAERRARQLLETAKDEGIISGKSPVGLAAAAVYAAALLTNEKVTQGAVSEVADISEVT 308
Query: 174 LMKRLIEF 181
+ R E
Sbjct: 309 IRNRYKEL 316
>gi|315426667|dbj|BAJ48293.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|315428010|dbj|BAJ49599.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|343485421|dbj|BAJ51075.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
Length = 307
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 16/186 (8%)
Query: 2 RQMKNALNIGE--------SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R ++ A+NI + S + A Y A+ +GR + + A+ Y ACR
Sbjct: 117 RNLQQAVNILQIYVDKLRLSQTVAERAMLIYRRALRAGLVRGRSIKSIMAAATYAACRML 176
Query: 54 SKPFLLIDFS-NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 112
P L +F +Y + + Y L + L + + DPSI+++K ++ G
Sbjct: 177 GTPRDLREFERSYPAVKRKTIAQGYRLLLKHLGLK-----VPVADPSIYVNKIAAKV--G 229
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+++ A +L + T G+ P G+ AALY++ ++ DI K + E
Sbjct: 230 LDQRTVQEAIRLLNEAVKRKATVGKDPVGIAAAALYMACQETTQNLTQKDIAKAAGVTEV 289
Query: 173 TLMKRL 178
T+ R
Sbjct: 290 TVRNRF 295
>gi|448305351|ref|ZP_21495283.1| transcription initiation factor TFB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445589198|gb|ELY43434.1| transcription initiation factor TFB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 334
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 21/191 (10%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K+AL +G D + A Y A+ N GR E + + L A RQ
Sbjct: 140 RNLKHALGEIDRMGSALGIPDATLETASVIYRRALEENLLPGRSIEGMATAALNAAVRQT 199
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P + + + I+ E Y L + L + + DP +L ++ L
Sbjct: 200 GVPRSIDELATVSRIDYLEAARAYRYLVRELELP-----MAPPDPLEYLPRYASAL---- 250
Query: 114 NKKVCDTAR---DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 170
+ +T R D+L + +G+ P GL AA+Y + G +++D+ + +
Sbjct: 251 -EITAETERRAHDLLEGGMEAGLHSGKHPVGLAAAAIYAGSRLTGEALTQADVSDAIDVS 309
Query: 171 EATLMKRLIEF 181
+ T+ R E
Sbjct: 310 KVTIRNRYQEL 320
>gi|448335767|ref|ZP_21524902.1| transcription initiation factor TFB [Natrinema pellirubrum DSM
15624]
gi|445615977|gb|ELY69614.1| transcription initiation factor TFB [Natrinema pellirubrum DSM
15624]
Length = 308
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +AL + SD + A + + A + +GR E + A+ +Y ACR L+
Sbjct: 132 VRRLTSALEL--SDSVRDQACQLFRSAQNEDLLRGRSIEAIAAASVYGACRCNGLSRLVD 189
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCD 119
D S + + Y L + L + E V PS+F+ + +D P ++
Sbjct: 190 DISEMARVAESRVTNAYKTLNEELGLPAEP-----VSPSMFVPRLASDLECP---DEIRQ 241
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
AR + + +TTG P+G A LY + G ++S+ + + +AT+
Sbjct: 242 RARALAEQAEERGVTTGVHPAGFAAACLYKAGREEGRWLTQSEAADVANASKATV 296
>gi|433593211|ref|YP_007282697.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433308249|gb|AGB34059.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +AL + SD + A + + A + +GR E + A+ +Y ACR L+
Sbjct: 149 VRRLTSALEL--SDSVRDQACQLFRSAQNEDLLRGRSIEAIAAASVYGACRCNGLSRLVD 206
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCD 119
D S + + Y L + L + E V PS+F+ + +D P ++
Sbjct: 207 DISEMARVAESRVTNAYKTLNEELGLPAEP-----VSPSMFVPRLASDLECP---DEIRQ 258
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
AR + + +TTG P+G A LY + G ++S+ + + +AT+
Sbjct: 259 RARALAEQAEERGVTTGVHPAGFAAACLYKAGREEGRWLTQSEAADVANASKATV 313
>gi|448568912|ref|ZP_21638324.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445725062|gb|ELZ76687.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 308
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +AL + SD + A + + A + +GR E + A+ +Y ACR L+
Sbjct: 132 VRRLASALEL--SDSVRDQACQLFRSAQNEDLLRGRSIEAIAAASVYGACRCNGLSRLVD 189
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCD 119
D S + + Y L + L + E V PS+F+ + +D P ++
Sbjct: 190 DVSELARVAESRVTNAYKTLNEELGLPAEP-----VSPSMFVPRLASDLECP---DEIRQ 241
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
AR + + +TTG P+G A LY + G ++S+ + + +AT+
Sbjct: 242 RARALAEQAEERGVTTGVHPAGFAAACLYKAGREEGRWLTQSEAADVANASKATV 296
>gi|448359569|ref|ZP_21548219.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445642204|gb|ELY95273.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 317
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 127 RNLKYALSEIDRMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKE 186
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 187 GIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--D 238
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGL 142
+K+V A +I+ + +G+ P+G
Sbjct: 239 VSKEVETRAVEIINQTTDKGLHSGKSPTGF 268
>gi|448307033|ref|ZP_21496934.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445596580|gb|ELY50665.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 298
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 34 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 93
+GR E A+ +Y CR +S P + + + + EL Y L + L +
Sbjct: 153 QGRSLEGFAAAAIYATCRTRSNPRTIDEITAVARASTDELTTAYDALNRELGLP-----T 207
Query: 94 KQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 153
+DP+ +L ++ +L G + V AR+ L ++ +D + GR PSG+ A LY +A
Sbjct: 208 GPIDPTQYLPRYASKL--GLDTAVERRAREHLTALLQDGVIGGRNPSGVAAACLYKAAGE 265
Query: 154 HGL--KFSKSDIVKIVHICEATL 174
+++D ++ ++ T+
Sbjct: 266 RDAWPTITQADAAEVANVAPVTI 288
>gi|288930943|ref|YP_003435003.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288893191|gb|ADC64728.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 346
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 81/166 (48%), Gaps = 9/166 (5%)
Query: 9 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 68
++G I A Y V+ N T+GR + + A+ +Y ACR+ P L + + + ++
Sbjct: 173 SLGLPKSITERAALIYRRVVSNNLTRGRCIDSIVAAAVYAACREAGLPRTLDEVAAHSSV 232
Query: 69 NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 128
+ +G Y L + L + + + ++ K L G + +V + A +I+
Sbjct: 233 DKRSVGRAYRFLARTLGLKP-----APITSTDYVPKICAAL--GVSGEVQERALEIVNEA 285
Query: 129 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
++ ++ R P+G+ AA+Y++++ G + ++ ++ + + E T+
Sbjct: 286 EKSMVS--RSPAGVAAAAVYIASILLGERRTQREVAGVAGVTEVTI 329
>gi|409730105|ref|ZP_11271696.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722749|ref|ZP_21705280.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788886|gb|EMA39587.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 327
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V S LY A RQ
Sbjct: 137 RNLKQALGEIDRMASALGLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQA 196
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 112
P L + + + EL Y + + L + ++ DP+ ++ +F L L
Sbjct: 197 GTPRSLDEIATVSRVGKMELTRTYRYVVRELGLE-----IQPADPASYVPRFASDLDLSE 251
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+++ AR +L + K + I +G+ P GL AA+Y +AL K ++ + ++ I E
Sbjct: 252 ESER---RARQLLETAKDEGIISGKSPVGLAAAAVYAAALLTNEKVTQGAVSEVADISEV 308
Query: 173 TLMKRLIEF 181
T+ R E
Sbjct: 309 TIRNRYKEL 317
>gi|336254668|ref|YP_004597775.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338657|gb|AEH37896.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 147 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 204
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
+ E+ Y + + L + ++ DP ++ +F L LP ++ A
Sbjct: 205 DAVSRVEKDEIARTYRYVIRELGLE-----VQPADPESYVPRFASDLDLPDETER---RA 256
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R +L + K I +G+ P GL AA+Y AL K +++D+ ++ +I E T+ R E
Sbjct: 257 RQLLKTAKDSGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVANISEVTIRNRYHEL 316
>gi|448349480|ref|ZP_21538321.1| transcription initiation factor TFB [Natrialba taiwanensis DSM
12281]
gi|445640053|gb|ELY93144.1| transcription initiation factor TFB [Natrialba taiwanensis DSM
12281]
Length = 308
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 11/175 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +AL + S+ + A + + A + +GR E + A+ +Y ACR L+
Sbjct: 132 VRRLASALEL--SNSVRDQACQLFRSAQNEDLLRGRSIEAIAAASVYGACRCNGLSRLVD 189
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCD 119
D S + ++ Y L + L + E V PS+F+ + +D P ++
Sbjct: 190 DVSEMARVAESQVTNAYKTLNEELSLPAEP-----VSPSMFVPRLASDLECP---DEIRQ 241
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
AR + + +TTG P+G A LY + G ++S+ + + +AT+
Sbjct: 242 RARTLAEQAEERGVTTGVHPAGFAAACLYKAGREEGRWLTQSEAADVANTSKATV 296
>gi|448597124|ref|ZP_21654262.1| Transcription factor TFIIB cyclin-related protein [Haloferax
alexandrinus JCM 10717]
gi|445741005|gb|ELZ92510.1| Transcription factor TFIIB cyclin-related protein [Haloferax
alexandrinus JCM 10717]
Length = 173
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 13/180 (7%)
Query: 4 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 63
M +AL++ S ++ A + Y A + +GR E + A LY CR++ P + +
Sbjct: 1 MGSALDLSWS--LIEEASQLYRRAQDADLIRGRSVEMIAAGSLYATCRRRGLPRPRDEIA 58
Query: 64 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP--GGNKKVCDTA 121
+ + ++ Y L E + QV + + RL G + +V A
Sbjct: 59 SVARCSCDQVQTGYRAL------NSELGIDAQV---VTARTYVTRLGSDSGLSSQVQSRA 109
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
++ + D IT GR P+G+ A LY++ H + +++++ + + TL R +E
Sbjct: 110 YELATTADEDGITNGRNPAGVAAACLYLAGTEHDVAPTQTELAALADVSVPTLRARYVEL 169
>gi|448439566|ref|ZP_21588130.1| Zinc finger TFIIB-type domain protein [Halorubrum saccharovorum DSM
1137]
gi|445691100|gb|ELZ43295.1| Zinc finger TFIIB-type domain protein [Halorubrum saccharovorum DSM
1137]
Length = 333
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 17/195 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A++ N GR E V + LY A RQ
Sbjct: 144 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQA 203
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 112
P L +F+ ++ EL Y + + L + ++ DP ++ +F RL L
Sbjct: 204 GNPRSLDEFTAVSRVDKMELTRTYRYVIRELKLE-----IQPADPESYVPRFVSRLDLSE 258
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+++ AR++L K IT+G+ P GL +A+Y +AL K ++S + ++ I E
Sbjct: 259 ETQRL---ARELLDGAKESGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSEVADISEV 315
Query: 173 TLMKRLIEFENTDSG 187
T+ R E + G
Sbjct: 316 TIRNRYKELLDASEG 330
>gi|448358436|ref|ZP_21547118.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445646069|gb|ELY99061.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 352
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 17/196 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V + LY + RQ
Sbjct: 163 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQA 222
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 112
P L + + + E+ Y + + L + +K DP ++ +F L L
Sbjct: 223 GTPRSLDEIAGVSRVEKDEIARTYRYVIRELGLE-----VKPADPVSYVPRFASDLDLSD 277
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
++ AR +L + K I +G+ P GL AA+Y AL K +++D+ ++ I E
Sbjct: 278 ETER---RARQLLETAKESGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVASISEV 334
Query: 173 TLMKRLIEFENTDSGS 188
T+ R E +SG+
Sbjct: 335 TIRNRYHELLEAESGA 350
>gi|448608903|ref|ZP_21660182.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445747280|gb|ELZ98736.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 331
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 9/187 (4%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A R P L +
Sbjct: 152 RMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMADTPRSLDEL 209
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ EL Y + + L + +K DP ++ +F L + + AR
Sbjct: 210 EKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--DLSDEAERQAR 262
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
+L K I +G+ P GL AA+Y +AL K ++S + ++ I E T+ R E
Sbjct: 263 TLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSQVSEVADISEVTIRNRYKELL 322
Query: 183 NTDSGSL 189
GSL
Sbjct: 323 EVQDGSL 329
>gi|397773185|ref|YP_006540731.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340837|ref|ZP_21529806.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682278|gb|AFO56655.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629443|gb|ELY82726.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 319
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 17/150 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 129 RNLKYALSEIDRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKE 188
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + ++ + E+G Y YIADE ++ L+ +P F+ +F L G
Sbjct: 189 DIPRSLEEVTSVARVEQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSELDVG 242
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGL 142
+ V A +I+ + +G+ P+G
Sbjct: 243 TD--VETKAIEIIDRTTEQGLHSGKSPTGF 270
>gi|393216052|gb|EJD01543.1| cyclin-like protein [Fomitiporia mediterranea MF3/22]
Length = 354
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 13/170 (7%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
I +AK+ Y A +G+ + V A+C+++ACRQ P + ++ LG
Sbjct: 152 ISDIAKQLYKRADEEKLLRGKSLDAVIAACIFIACRQAHVPRTFREMCTLTHVPKKTLGQ 211
Query: 76 VYLQLCQVLYIADE-SNVLKQ----------VDPSIFLHKFTDRLLPGGNKKVCDTARDI 124
Y L + +A SN Q +P L ++ + L G V TA +I
Sbjct: 212 CYKTLEKAFNLAAAGSNNTTQNSRPDPAATTTNPQDLLARYCNHL--GLPHLVQSTASEI 269
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
++ K T GR P + ++Y + G+ + D+ + + E+T+
Sbjct: 270 ISIGKEHAFTDGRSPISIASGSIYFTTQLLGVPMTMKDLCENAGVSESTV 319
>gi|448420035|ref|ZP_21580845.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
gi|445674203|gb|ELZ26748.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
Length = 330
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V S LY A R
Sbjct: 141 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMA 200
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 112
P L + +N + E+ Y + + L + ++ DP ++ +F L L
Sbjct: 201 GTPRSLDEITNVSRVGKDEISRTYRYVVRELKLE-----IEPADPEQYVPRFASDLDLSD 255
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+++ AR +L + K I +G+ P GL AA+Y ++L K ++S + ++ +I E
Sbjct: 256 ESER---HARQLLKTAKEQGIHSGKSPVGLAAAAIYAASLLANEKVTQSQVSEVANISEV 312
Query: 173 TLMKRLIEF 181
T+ R E
Sbjct: 313 TIRNRYHEL 321
>gi|340344614|ref|ZP_08667746.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519755|gb|EGP93478.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 297
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 7/173 (4%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
IG SD + +A Y AV + T+GR V A+ +Y ACR L D S +I
Sbjct: 124 IGVSDHVKELAAYIYRKAVEQKITQGRSINAVVAASMYAACRNTYTLRTLRDISEVTDIK 183
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
++ Y + + L + + V+ QV L K ++ L G ++K A +IL
Sbjct: 184 PKKIAQSYRAIVKQLDL--KIPVVNQVSC---LSKISNNL--GVSEKTKYLAMEILKKAA 236
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
I GR P G+ A LY + L F+++ + + + T+ R E +
Sbjct: 237 DLQILAGRDPVGISAAILYYACLIKKEPFTQTQVAEASRVTAVTVRNRFHEIK 289
>gi|115702419|ref|XP_796335.2| PREDICTED: transcription initiation factor IIB-like
[Strongylocentrotus purpuratus]
Length = 321
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 9/142 (6%)
Query: 34 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 93
+GR + + A+CLY+ACRQ+ P + +N E+G + + + L E+NV+
Sbjct: 157 RGRSNDAIAAACLYIACRQEGVPRTFKEICAVSRVNKREIGRCFKLILKAL----ETNVV 212
Query: 94 KQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 152
+ F+ +F L LP KV A I + GR P + AA+Y+++
Sbjct: 213 -LITTGDFMSRFCSNLSLP---PKVQRAATHIARKADELDLVAGRSPISVTAAAIYMASQ 268
Query: 153 THGLKFSKSDIVKIVHICEATL 174
K S+ +I +I + + T+
Sbjct: 269 ASEEKRSQKEIGEIAGVADVTI 290
>gi|448739810|ref|ZP_21721814.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445798476|gb|EMA48880.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 323
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 86/189 (45%), Gaps = 16/189 (8%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ +M +AL + +S + A Y A+ GR E V + +++A RQ + P L
Sbjct: 140 IERMASALGLPQS--VRETAGVIYRRAIEDGLLPGRSIEGVATAAIHIASRQANIPRSLD 197
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCD 119
+ + + Y Y+ E ++ L DP +L +F L + +V
Sbjct: 198 TLAEVSRVEKLSITRTYR------YVTRELDINLPPADPLEYLPRFVSDL--DLSDEVEH 249
Query: 120 TARDILASMKRDWIT--TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
+R++L ++ D + +G+ P GL AA+Y +L K ++ + ++ I + T+ R
Sbjct: 250 RSRELLETVSEDEPSYLSGKNPVGLAAAAVYAGSLLCNEKVTQVAVGEVADISQVTIRNR 309
Query: 178 ---LIEFEN 183
L+EF++
Sbjct: 310 YTELLEFQD 318
>gi|448348503|ref|ZP_21537352.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445642870|gb|ELY95932.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 360
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY + RQ P L +
Sbjct: 181 RMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYASARQAGTPRSLDEI 238
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTA 121
S ++ EL Y + + L + +K DP ++ +F L L +++ A
Sbjct: 239 SAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETERM---A 290
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R++L S +++ + +G+ P GL A +Y +AL K +++++ ++ I E T+ R E
Sbjct: 291 RELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKEL 350
>gi|448347239|ref|ZP_21536116.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445631076|gb|ELY84319.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 296
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 11/179 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M ++L I S + VA Y A+ + +GR E V S LY ACR + P L +
Sbjct: 119 RMASSLAIPRS--VREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 176
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ + E+G Y Y+A E N+ ++ V+P ++ +F L +V A
Sbjct: 177 AAVSRVERKEIGRTY------RYVAQELNLEMEPVNPKKYVPRFCSELELSEEVQV--KA 228
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 229 NEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRYQE 287
>gi|405962690|gb|EKC28341.1| Transcription initiation factor IIB [Crassostrea gigas]
Length = 319
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 34 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 93
KGR + + ++C+Y+ACRQ+ P + I+ E+G V+ + + L E+NV
Sbjct: 155 KGRSNDAIASACMYIACRQEGVPRTFKEICAVSKISKKEIGRVFKLILKNL----ETNV- 209
Query: 94 KQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDW-ITTGRKPSGLCGAALYVSA 151
+ + F+ +F L LP +K A +A D +T GR P + AA+Y+++
Sbjct: 210 ELITTGDFMSRFCSNLSLPNSVQK----AATHIARKAVDLDLTPGRSPISVAAAAIYMAS 265
Query: 152 LTHGLKFSKSDIVKIVHICEATL 174
K S+ +I I + E T+
Sbjct: 266 QASADKKSQKEIGDIAGVAEVTI 288
>gi|448604552|ref|ZP_21657719.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445743961|gb|ELZ95441.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 331
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 9/185 (4%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY + R S P L +
Sbjct: 153 RMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSLDEL 210
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ EL Y + + L + +K DP ++ +F L G + + AR
Sbjct: 211 EKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--GLSDESERQAR 263
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
+L K + +G+ P GL AA+Y +AL K ++S++ + I E T+ R E
Sbjct: 264 QLLRDAKETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELL 323
Query: 183 NTDSG 187
G
Sbjct: 324 EVQDG 328
>gi|354612022|ref|ZP_09029974.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191600|gb|EHB57106.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 317
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 10/177 (5%)
Query: 11 GESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINV 70
G D + A Y A+ + GR E V SC+Y A RQ P L + ++ +
Sbjct: 145 GLPDSVRETASVIYRRALEEDLLPGRSIEGVATSCVYAAARQAGVPRSLDEIADVSRVEK 204
Query: 71 YELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKR 130
E+ Y + + L + + DP ++ +F L + + AR++L + K
Sbjct: 205 AEIARTYRYVIRELGLE-----VAPADPESYVPRFASSLEL--SDEASHRARELLKTAKD 257
Query: 131 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR---LIEFENT 184
+ +G+ P GL AA+Y +AL K +++ + ++ I E T+ R L+E E T
Sbjct: 258 KGVHSGKSPVGLAAAAVYAAALLTNEKTTQAKVSEVADISEVTIRNRYHELLEAEET 314
>gi|435848670|ref|YP_007310920.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674938|gb|AGB39130.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 319
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 37/213 (17%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 129 RNLKYALSEIDRMVSALGVPKPVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKE 188
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + + ++ E+G Y Y+ADE ++ L+ +P F+ +F L
Sbjct: 189 GIPRSLEEVTAVSRVDQREIGRTY------RYVADELDINLEPTNPRQFVPRFCSEL--D 240
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+K V A +I+ + +G+ P+G AA+Y + L +CE
Sbjct: 241 VDKDVESKAIEIIDETTNQGLHSGKSPTGFAAAAIYAAGL----------------LCEE 284
Query: 173 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGV 205
T+ +R + D+ T+ R +E E +
Sbjct: 285 TIPQRAV----ADTAQTTVVTVRNRYREQLEAI 313
>gi|407464963|ref|YP_006775845.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048151|gb|AFS82903.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 15/166 (9%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
++ A Y A+ + +GR + A+ LY ACR P L D ++ N+ ++
Sbjct: 140 VLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLKDVADAANVKRKDIAR 199
Query: 76 VYLQLCQVLY----IADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRD 131
Y L L + D + ++ + + + T R A +L +
Sbjct: 200 CYRLLHHELELKMPVVDSIQCIARISSKLEISEKTKRY-----------AVKVLKEAQER 248
Query: 132 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 177
+ G+ P GL ALY+S + +G+ ++ D+ + + E T+ R
Sbjct: 249 KESAGKDPMGLAATALYLSCVKNGVSITQRDLAEAAGVTEVTIRNR 294
>gi|448314361|ref|ZP_21504059.1| transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445595188|gb|ELY49300.1| transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 352
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 14/186 (7%)
Query: 2 RQMKNALNIGESDEIVHVAKRF-----YGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 56
R ++ L G S E V A + Y A+ + GR E V + LY + RQ P
Sbjct: 165 RALEEDLLPGRSIEGVATASLYASSVIYRRALEEDLLPGRSIEGVATASLYASARQAGTP 224
Query: 57 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNK 115
L + S + EL Y + + L + +K DP ++ +F L L +
Sbjct: 225 RSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSDETE 279
Query: 116 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 175
++ AR++L S +++ + +G+ P GL AA+Y +AL K +++D+ ++ I E T+
Sbjct: 280 RM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIR 336
Query: 176 KRLIEF 181
R E
Sbjct: 337 NRYKEL 342
>gi|448616659|ref|ZP_21665369.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751314|gb|EMA02751.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 288
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 9/183 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ AL G + I A + A + +GR E A+C+Y ACR +
Sbjct: 115 IRRVTGAL--GLPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVAGISRSVE 172
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ + E A Y L + L + + DP+ +L +F +L ++
Sbjct: 173 EVCDVSKSTESEHQAAYRALNRDLGLP-----VAPADPTEYLPRFATKL--DLDRDTERR 225
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
AR+ +A + D + G+ P G+ A LY +A G ++SD + + TL K +
Sbjct: 226 AREYVAEARDDGLVAGKNPCGVAAACLYTAARDLGEDCTQSDAADVADVTPVTLRKTYVA 285
Query: 181 FEN 183
+
Sbjct: 286 LRD 288
>gi|448624536|ref|ZP_21670484.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445749741|gb|EMA01183.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 331
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 9/185 (4%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY + R S P L +
Sbjct: 153 RMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSLDEL 210
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ EL Y + + L + +K DP ++ +F L G + + AR
Sbjct: 211 EKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--GLSDESERQAR 263
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
+L K + +G+ P GL AA+Y +AL K ++S++ + I E T+ R E
Sbjct: 264 QLLRDAKETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELL 323
Query: 183 NTDSG 187
G
Sbjct: 324 EVQDG 328
>gi|448414464|ref|ZP_21577533.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445682030|gb|ELZ34454.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 340
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 9/187 (4%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A RQ P L +
Sbjct: 161 RMASALGLPEN--VRETASVIYRRALGDDLLPGRSIEGVATASLYAAARQAGTPRSLDEL 218
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ EL Y + + L + ++ DP ++ +F L G + + A
Sbjct: 219 ETVSRVDKMELTRTYRYIVRELKLE-----IEPADPEQYVPRFASEL--GISDEAERQAH 271
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
+L K I +G+ P GL AA+Y +AL K ++S + ++ I E T+ R E
Sbjct: 272 TLLRGAKEVGIHSGKSPVGLAAAAVYAAALLTNEKVTQSQVSEVASISEVTIRNRYKELL 331
Query: 183 NTDSGSL 189
D L
Sbjct: 332 EVDDAGL 338
>gi|335437109|ref|ZP_08559892.1| transcription initiation factor TFB [Halorhabdus tiamatea SARL4B]
gi|334896492|gb|EGM34641.1| transcription initiation factor TFB [Halorhabdus tiamatea SARL4B]
Length = 325
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +AL + SD + A + + A + +GR E + A+ +Y ACR L+
Sbjct: 149 VRRLASALEL--SDSVRDQACQLFRSAQNEDLLRGRSIEAIAAASVYGACRCNGLSRLVD 206
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCD 119
D S + + Y L + L + E V PS+F+ + +D P ++
Sbjct: 207 DVSEMARLAESRVTNAYKTLNEELGLPAEP-----VSPSMFVPRLASDLECP---DEIRQ 258
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
AR + + +TTG P+G A LY + G ++S+ + + +AT+
Sbjct: 259 RARALAEQAEERGVTTGVHPAGFAAACLYKAGREEGRWLTQSEAADVANASKATV 313
>gi|448576224|ref|ZP_21642267.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445729904|gb|ELZ81498.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 332
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 10/188 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V + LY A R P L +
Sbjct: 153 RMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATASLYAAARMADTPRSLDEL 210
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ EL Y + + L + +K DP ++ +F L G + + AR
Sbjct: 211 EKVSRVEKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--GLSDEAERQAR 263
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE-F 181
++L K + +G+ P GL AA+Y +AL K ++S++ + I E T+ R E
Sbjct: 264 ELLRGAKETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSAVADISEVTIRNRYKELL 323
Query: 182 ENTDSGSL 189
E DS L
Sbjct: 324 EVQDSNML 331
>gi|300711217|ref|YP_003737031.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|299124900|gb|ADJ15239.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
Length = 335
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 15/195 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G + A Y A+ + GR E V + LY A RQ
Sbjct: 136 RNLKQALGEIDRMASALGLPKNVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQA 195
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + I+ EL Y + + L + ++ DP ++ +F L
Sbjct: 196 GTPRSLDEIVQVSRIDRMELTRTYRYVIRELDLE-----VQPADPESYVPRFASDLELSD 250
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ AR++L++ K+ I +G+ P GL AA+Y +AL K +++++ ++ +I E T
Sbjct: 251 EAE--HRARELLSNAKQSGIHSGKSPVGLAAAAVYAAALLTNEKVTQAEVSEVANISEVT 308
Query: 174 LMKRLIEFENTDSGS 188
+ R E D S
Sbjct: 309 IRNRYKELLQADDTS 323
>gi|448419798|ref|ZP_21580642.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674712|gb|ELZ27249.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 352
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V SC+Y A R P L +
Sbjct: 173 RMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSCVYAAARMAGVPRSLDEI 230
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
S + E+ Y YIA E ++ +K DP ++ +F L K+ A
Sbjct: 231 SEVSRVEKSEVARTYR------YIARELSLEVKPADPEQYVPRFGSELGLSDEAKM--RA 282
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R +L + K + +G+ P GL AA+Y +AL K +++ + ++ I E T+ R E
Sbjct: 283 RQLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRYHEL 342
>gi|395329967|gb|EJF62352.1| cyclin-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 351
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 11/167 (6%)
Query: 16 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 75
I +AK+ Y + +G+ E V A+C+++ACRQ P + N +++ LG
Sbjct: 151 ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTHVSKKVLGQ 210
Query: 76 VYLQLCQVLYIADESNVLKQ-VDPS------IFLHKFTDRL-LPGGNKKVCDTARDILAS 127
Y L Q + ++ + + PS L ++ + L LP + +C DI+
Sbjct: 211 CYKALEQAFNLTPGASQDRHAITPSGTTGAEDLLVRYCNHLALPPNFQPIC---ADIIVK 267
Query: 128 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
+ I GR P + G A+Y + + +I + + E T+
Sbjct: 268 ARELGIADGRSPVSIAGGAIYFTCYLLDKPKTVREISTVAGVSEGTI 314
>gi|322371117|ref|ZP_08045669.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549107|gb|EFW90769.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 324
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 17/197 (8%)
Query: 2 RQMKNAL--------NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL ++G D + A Y A+ + GR E V LY A RQ
Sbjct: 134 RNLKQALGEIDRMASSLGLPDTVRETASVIYRRALDEDLLPGRSIEGVATGALYAAARQA 193
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + + + E+ Y YIA E + ++ DP ++ +F L
Sbjct: 194 RTPRSLDELTAVSRVEKDEIARTYR------YIARELGLEIEPADPKSYVPRFASEL--D 245
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+ + AR +L + + +G+ P GL AA+Y +AL K ++S++ + +I E
Sbjct: 246 LSDETERRARSLLDTATEKGLHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSDVANISEV 305
Query: 173 TLMKRLIEFENTDSGSL 189
T+ R E + + G++
Sbjct: 306 TIRNRYHELLDAEEGTI 322
>gi|389845720|ref|YP_006347959.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243026|gb|AFK17972.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 289
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 9/183 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ AL G + I A + A + +GR E A+C+Y ACR +
Sbjct: 116 IRRVTGAL--GLPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVAGISRSVE 173
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ + E A Y L + L + + DP+ +L +F +L ++
Sbjct: 174 EVCDVSKSTESEHQAAYRALNRDLGLP-----VAPADPTEYLPRFATKL--DLDRDTERR 226
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
AR+ +A + D + G+ P G+ A LY +A G ++SD + + TL K +
Sbjct: 227 AREYVAEARDDGLVAGKNPCGVAAACLYTAARDLGEDCTQSDAADVADVTPVTLRKTYVA 286
Query: 181 FEN 183
+
Sbjct: 287 LRD 289
>gi|321470098|gb|EFX81075.1| hypothetical protein DAPPUDRAFT_50412 [Daphnia pulex]
Length = 324
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 6/200 (3%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A+NI +V A + KG T+ + ++CLY+ACRQ+ P +
Sbjct: 129 AVNINLPRTVVDRANCLFKNVHDGKHLKGHSTKAIASTCLYIACRQEGVPRTFKEICALT 188
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKV-CDTARDI- 124
I+ ELG Y + + L +V+ ++ S F+ +F L K + + + I
Sbjct: 189 KIDKKELGRCYKLIPKAL--ETSVDVIPRITTSDFIPRFCSNLGMQLTKVIFLNVSLHIG 246
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184
L +++ D + GR P + AA+Y+++L K +K I I + + T+ ++L E
Sbjct: 247 LKAVELD-VVPGRSPLSVAAAAIYMASLASEKKLTKKAIGDITGVADVTI-RQLHELMYP 304
Query: 185 DSGSLTIEDFMARKKELHEG 204
+ L +F +L +G
Sbjct: 305 RAAELFPPEFNLIISKLSQG 324
>gi|399578576|ref|ZP_10772323.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
gi|399236462|gb|EJN57399.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
Length = 318
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 9/181 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ + L + S I A + + A + GR E V A+ +Y CR +P
Sbjct: 134 VRRIASTLEL--SGSIRDQACQLFQSAQREDLLLGRSIEAVAAASVYGVCRCHGRPISRD 191
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
D + ++ + Y L + L + + V P L K L G K+V
Sbjct: 192 DLVDVARVDHSGVTNTYKTLNRELGLPTQP-----VAPQSLLPKLASEL--GVEKRVRRR 244
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A+ + IT G +PSG+ A LY+++ +G +++ + ++ ATL R E
Sbjct: 245 AQRLAERAHETSITNGYQPSGVAAACLYLASQENGESLTQTQVAEVAGTTPATLRARRAE 304
Query: 181 F 181
Sbjct: 305 L 305
>gi|448331622|ref|ZP_21520885.1| transcription initiation factor TFB [Natrinema versiforme JCM
10478]
gi|445609188|gb|ELY62997.1| transcription initiation factor TFB [Natrinema versiforme JCM
10478]
Length = 296
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +AL + ES I A + + A + +GR E + A+ +Y ACR L+
Sbjct: 120 VRRLASALELSES--IRDQACQLFRSAQNEDLLRGRSIEAIAAASVYGACRCNGLSRLVD 177
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCD 119
D S + + VY L + L + E V PS+F+ + +D P ++
Sbjct: 178 DVSEMARVAESRVTNVYKTLNEELGLPAEP-----VSPSMFVPRLASDLECP---DEIRQ 229
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
AR + + +TTG P+G A LY + G +SD+ + ++ T+
Sbjct: 230 RARALAEQAEERGVTTGVHPAGFAAACLYKAGQEQGKWVMQSDVAETGNVTPTTI 284
>gi|110667127|ref|YP_656938.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385802543|ref|YP_005838943.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109624874|emb|CAJ51283.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728035|emb|CCC39156.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 366
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V SC+Y A R P L +
Sbjct: 187 RMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEI 244
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ + E+ Y YIA E ++ +K DP ++ +F L G + + A
Sbjct: 245 AEVSRVPKSEVARTYR------YIARELSLEVKPADPEQYVPRFASEL--GLSDESTLRA 296
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
R +L + K + +G+ P GL AA+Y +AL K +++ + ++ I E T+ R E
Sbjct: 297 RQLLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRYHEL 356
>gi|448330751|ref|ZP_21520030.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445611255|gb|ELY65015.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 321
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 11/179 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M ++L I S + VA Y A+ + +GR E V S LY ACR + P L +
Sbjct: 144 RMASSLAIPRS--VREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 201
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ + E+G Y Y+A E N+ ++ V+P ++ +F L +V A
Sbjct: 202 AAVSRVERKEIGRTY------RYVAQELNLEMEPVNPKKYVPRFCSELELSEEVQV--KA 253
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 254 NEIIDVTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRNRYQE 312
>gi|289582685|ref|YP_003481151.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281888|ref|ZP_21473181.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532238|gb|ADD06589.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445577517|gb|ELY31950.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 317
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 127 RNLKYALSEIDRMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKE 186
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 187 GIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--D 238
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGL 142
+K+V A +I+ + +G+ P+G
Sbjct: 239 VSKEVETRAVEIIDQTTDLGLHSGKSPTGF 268
>gi|448355612|ref|ZP_21544362.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445634733|gb|ELY87908.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 317
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL+ +G + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 127 RNLKYALSEIDRMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKE 186
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 112
P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 187 GIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--D 238
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGL 142
+K+V A +I+ + +G+ P+G
Sbjct: 239 VSKEVETRAVEIIDQTTDLGLHSGKSPTGF 268
>gi|448309529|ref|ZP_21499387.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445589952|gb|ELY44175.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 325
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + +S + A Y A+ + GR E V S LY A RQ P L +
Sbjct: 147 RMASALGLPKS--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 204
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ + E+ Y + + L + ++ DP ++ +F L + + AR
Sbjct: 205 TAVSRVEKDEIARTYRYVIRELGLE-----VQPADPENYVPRFASDL--DLSDETERRAR 257
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+L++ K I +G+ P GL AA+Y +AL K +++D+ + I E T+ R E
Sbjct: 258 SLLSTAKESGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRYHEL 316
>gi|76801766|ref|YP_326774.1| transcription initiation factor TFB 3 [Natronomonas pharaonis DSM
2160]
gi|76557631|emb|CAI49214.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 319
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 15/188 (7%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ N GR E V + +Y A RQ
Sbjct: 129 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALDENLLPGRSIEGVSTASVYAAARQA 188
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + + + E+ Y + + L + ++ DP ++ +F L
Sbjct: 189 GVPRSLDEVAGVSRVEKSEIARTYRYVVRELGLE-----VQPADPESYVPRFASELEL-- 241
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+++ + AR +L + K + +G+ P GL AA+Y ++L K +++ + ++ I E T
Sbjct: 242 SEEAENRARQLLQNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKTTQAAVSEVADISEVT 301
Query: 174 LMKRLIEF 181
+ R E
Sbjct: 302 IRNRYHEL 309
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,380,122,346
Number of Sequences: 23463169
Number of extensions: 303291062
Number of successful extensions: 1382731
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 2416
Number of HSP's that attempted gapping in prelim test: 1342890
Number of HSP's gapped (non-prelim): 29068
length of query: 490
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 343
effective length of database: 8,910,109,524
effective search space: 3056167566732
effective search space used: 3056167566732
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)