BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011243
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 581 bits (1497), Expect = e-166, Method: Compositional matrix adjust.
Identities = 284/479 (59%), Positives = 341/479 (71%), Gaps = 36/479 (7%)
Query: 47 VRIGLRKKKLDQINRLVGQTVSKEEETMR------------------------------- 75
VRI L+K+ +D+ +R+ EE+ +
Sbjct: 1 VRIALKKRPIDRNSRVATGLSGGEEQPLLSGANPLRSEEEGDIVALKNYMNAQYFGEIGV 60
Query: 76 -TPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGA 131
TP +++ + GSSNLWVPSAKCYFS+ +NG AAIQYGTG+
Sbjct: 61 GTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGS 120
Query: 132 ISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYN 191
I+G+FS+D+V VGDLVVK+Q+FIEATKE ITFL AKFDGILGLGF+EIS+GKA+PVWY
Sbjct: 121 IAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVPVWYK 180
Query: 192 MLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDV 251
M++QGLV +PVFSFWLNR DP HY GEHTYVPVT+KGYWQF+MGDV
Sbjct: 181 MIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDV 240
Query: 252 LIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTI 311
L+ G++TG+C+ GC AIADSGTSLLAGPT IIT+IN IGA+GV+SQECKT+V QYG+ I
Sbjct: 241 LVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQI 300
Query: 312 LEMLIAETQPQKICSQMGLCTFDGTRGFSMGIEXXXXXXXXXXXXXXXXXAMCSACEMAV 371
L++L+AETQP+KICSQ+GLCTFDGTRG S GI MCSACEMAV
Sbjct: 301 LDLLLAETQPKKICSQVGLCTFDGTRGVSAGIR-SVVDDEPVKSNGLRADPMCSACEMAV 359
Query: 372 IWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAP 431
+WMQN+L +N+T D IL+YVNQLC+RLPSP GESAVDC +L SMP++ FTIGGK F L P
Sbjct: 360 VWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKP 419
Query: 432 NEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 490
EY+L+VGEG AAQCISGFTA D+ PPRGPLWILGDVFMG YHTVFDYG L IGFA+AA
Sbjct: 420 EEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 478
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/221 (56%), Positives = 150/221 (67%), Gaps = 7/221 (3%)
Query: 76 TPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAI 132
TP +++ + GSS LWVPS+KC S NGT AI YGTG+I
Sbjct: 23 TPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKENGTFGAIIYGTGSI 82
Query: 133 SGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNM 192
+GFFSQD+V +GDLVVK QDFIEAT EA FL FDGILGL FQ IS+ PVWYNM
Sbjct: 83 TGFFSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLSFQTISV----PVWYNM 138
Query: 193 LDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVL 252
L+QGLVKE FSFWLNR+ DP+H++G+HTYVPVT + YWQF +GDVL
Sbjct: 139 LNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVL 198
Query: 253 IDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 293
I ++TG+C+ GC A ADSGTSLL+GPT I+TQINHAIGA+
Sbjct: 199 IGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGAN 239
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 121/222 (54%), Gaps = 5/222 (2%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVG 144
GSSNLWVPS C S + G S +IQYGTG++SG D V V
Sbjct: 45 GSSNLWVPSVYCT-SPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGSLSGIIGADQVSVE 103
Query: 145 DLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFS 204
L V Q F E+ E TF+ A+FDGILGLG+ +++G PV+ NM+ Q LV P+FS
Sbjct: 104 GLTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFS 163
Query: 205 FWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTG 264
+++ + D H+ G +VPVTK+ YWQ + ++ + G T +CS G
Sbjct: 164 VYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGG-TVMFCSEG 222
Query: 265 CNAIADSGTSLLAGPTTIITQINHAIGAS---GVISQECKTL 303
C AI D+GTSL+ GP+ I Q+ +AIGA+ G + EC L
Sbjct: 223 CQAIVDTGTSLITGPSDKIKQLQNAIGAAPVDGEYAVECANL 264
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 62/89 (69%), Gaps = 2/89 (2%)
Query: 402 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEY-VLEVGEGVAAQCISGFTAFDVAPPRG 460
+GE AV+C NL+ MP+V+FTI G + L+P Y +L+ +G+ C SGF D+ PP G
Sbjct: 254 DGEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQF-CSSGFQGLDIHPPAG 312
Query: 461 PLWILGDVFMGRYHTVFDYGNLSIGFAEA 489
PLWILGDVF+ ++++VFD GN +G A A
Sbjct: 313 PLWILGDVFIRQFYSVFDRGNNRVGLAPA 341
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 118/211 (55%), Gaps = 5/211 (2%)
Query: 85 GSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKV 143
GSSN+WVPS+KC NGT ++Y TG +SGF SQD + V
Sbjct: 83 GSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITV 142
Query: 144 GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVF 203
G + V Q F E T+ ++ F+ A+FDG++G+GF E +IG+ P++ N++ QG++KE VF
Sbjct: 143 GGITV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVF 201
Query: 204 SFWLNRDXXXXXXX--XXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYC 261
SF+ NRD DP HY+G Y+ + K G WQ +M V + G +T C
Sbjct: 202 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLC 260
Query: 262 STGCNAIADSGTSLLAGPTTIITQINHAIGA 292
GC A+ D+G S ++G T+ I ++ A+GA
Sbjct: 261 EDGCLALVDTGASYISGSTSSIEKLMEALGA 291
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 407 VDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILG 466
V C+ ++P++SF +GGK + L +YV + C A D+ PP GP W LG
Sbjct: 300 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALG 359
Query: 467 DVFMGRYHTVFDYGNLSIGFAEA 489
F+ +++T FD N IGFA A
Sbjct: 360 ATFIRKFYTEFDRRNNRIGFALA 382
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 148 bits (373), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 118/211 (55%), Gaps = 5/211 (2%)
Query: 85 GSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKV 143
GSSN+WVPS+KC NGT ++Y TG +SGF SQD + V
Sbjct: 40 GSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITV 99
Query: 144 GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVF 203
G + V Q F E T+ ++ F+ A+FDG++G+GF E +IG+ P++ N++ QG++KE VF
Sbjct: 100 GGITV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVF 158
Query: 204 SFWLNRDXXXXXXX--XXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYC 261
SF+ NRD DP HY+G Y+ + K G WQ +M V + G +T C
Sbjct: 159 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLC 217
Query: 262 STGCNAIADSGTSLLAGPTTIITQINHAIGA 292
GC A+ D+G S ++G T+ I ++ A+GA
Sbjct: 218 EDGCLALVDTGASYISGSTSSIEKLMEALGA 248
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 407 VDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILG 466
V C+ ++P++SF +GGK + L +YV + C A D+ PP GP W LG
Sbjct: 257 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALG 316
Query: 467 DVFMGRYHTVFDYGNLSIGFAEA 489
F+ +++T FD N IGFA A
Sbjct: 317 ATFIRKFYTEFDRRNNRIGFALA 339
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 147 bits (372), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 118/211 (55%), Gaps = 5/211 (2%)
Query: 85 GSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKV 143
GSSN+WVPS+KC NGT ++Y TG +SGF SQD + V
Sbjct: 33 GSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITV 92
Query: 144 GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVF 203
G + V Q F E T+ ++ F+ A+FDG++G+GF E +IG+ P++ N++ QG++KE VF
Sbjct: 93 GGITV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVF 151
Query: 204 SFWLNRDXXXXXXX--XXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYC 261
SF+ NRD DP HY+G Y+ + K G WQ +M V + G +T C
Sbjct: 152 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLC 210
Query: 262 STGCNAIADSGTSLLAGPTTIITQINHAIGA 292
GC A+ D+G S ++G T+ I ++ A+GA
Sbjct: 211 EDGCLALVDTGASYISGSTSSIEKLMEALGA 241
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 407 VDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILG 466
V C+ ++P++SF +GGK + L +YV + C A D+ PP GP W LG
Sbjct: 250 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALG 309
Query: 467 DVFMGRYHTVFDYGNLSIGFAEA 489
F+ +++T FD N IGFA A
Sbjct: 310 ATFIRKFYTEFDRRNNRIGFALA 332
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 147 bits (372), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 118/211 (55%), Gaps = 5/211 (2%)
Query: 85 GSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKV 143
GSSN+WVPS+KC NGT ++Y TG +SGF SQD + V
Sbjct: 40 GSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITV 99
Query: 144 GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVF 203
G + V Q F E T+ ++ F+ A+FDG++G+GF E +IG+ P++ N++ QG++KE VF
Sbjct: 100 GGITV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVF 158
Query: 204 SFWLNRDXXXXXXX--XXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYC 261
SF+ NRD DP HY+G Y+ + K G WQ +M V + G +T C
Sbjct: 159 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLC 217
Query: 262 STGCNAIADSGTSLLAGPTTIITQINHAIGA 292
GC A+ D+G S ++G T+ I ++ A+GA
Sbjct: 218 EDGCLALVDTGASYISGSTSSIEKLMEALGA 248
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 407 VDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILG 466
V C+ ++P++SF +GGK + L +YV + C A D+ PP GP W LG
Sbjct: 257 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALG 316
Query: 467 DVFMGRYHTVFDYGNLSIGFAEA 489
F+ +++T FD N IGFA A
Sbjct: 317 ATFIRKFYTEFDRRNNRIGFALA 339
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 118/211 (55%), Gaps = 5/211 (2%)
Query: 85 GSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKV 143
GSSN+WVPS+KC NGT ++Y TG +SGF SQD + V
Sbjct: 36 GSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITV 95
Query: 144 GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVF 203
G + V Q F E T+ ++ F+ A+FDG++G+GF E +IG+ P++ N++ QG++KE VF
Sbjct: 96 GGITV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVF 154
Query: 204 SFWLNRDXXXXXXX--XXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYC 261
SF+ NRD DP HY+G Y+ + K G WQ +M V + G +T C
Sbjct: 155 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLC 213
Query: 262 STGCNAIADSGTSLLAGPTTIITQINHAIGA 292
GC A+ D+G S ++G T+ I ++ A+GA
Sbjct: 214 EDGCLALVDTGASYISGSTSSIEKLMEALGA 244
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 407 VDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILG 466
V C+ ++P++SF +GGK + L +YV + C A D+ PP GP W LG
Sbjct: 253 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALG 312
Query: 467 DVFMGRYHTVFDYGNLSIGFAEA 489
F+ +++T FD N IGFA A
Sbjct: 313 ATFIRKFYTEFDRRNNRIGFALA 335
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 118/209 (56%), Gaps = 6/209 (2%)
Query: 85 GSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKV 143
GSSN+WVPS+KC NGT ++Y TG +SGF SQD + V
Sbjct: 40 GSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITV 99
Query: 144 GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVF 203
G + V Q F E T+ ++ F+ A+FDG++G+GF E +IG+ P++ N++ QG++KE VF
Sbjct: 100 GGITV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVF 158
Query: 204 SFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCST 263
SF+ NRD DP HY+G Y+ + K G WQ +M V + G +T C
Sbjct: 159 SFYYNRD---SLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLCED 214
Query: 264 GCNAIADSGTSLLAGPTTIITQINHAIGA 292
GC A+ D+G S ++G T+ I ++ A+GA
Sbjct: 215 GCLALVDTGASYISGSTSSIEKLMEALGA 243
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 407 VDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILG 466
V C+ ++P++SF +GGK + L +YV + C A D+ PP GP W LG
Sbjct: 252 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALG 311
Query: 467 DVFMGRYHTVFDYGNLSIGFAEA 489
F+ +++T FD N IGFA A
Sbjct: 312 ATFIRKFYTEFDRRNNRIGFALA 334
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 118/211 (55%), Gaps = 5/211 (2%)
Query: 85 GSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKV 143
GSSN+WVPS+KC NGT ++Y TG +SGF SQD + V
Sbjct: 37 GSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITV 96
Query: 144 GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVF 203
G + V Q F E T+ ++ F+ A+FDG++G+GF E +IG+ P++ N++ QG++KE VF
Sbjct: 97 GGITV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVF 155
Query: 204 SFWLNRDXXXXXXX--XXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYC 261
SF+ NRD DP HY+G Y+ + K G WQ +M V + G +T C
Sbjct: 156 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLC 214
Query: 262 STGCNAIADSGTSLLAGPTTIITQINHAIGA 292
GC A+ D+G S ++G T+ I ++ A+GA
Sbjct: 215 EDGCLALVDTGASYISGSTSSIEKLMEALGA 245
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 407 VDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILG 466
V C+ ++P++SF +GGK + L +YV + C A D+ PP GP W LG
Sbjct: 254 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALG 313
Query: 467 DVFMGRYHTVFDYGNLSIGFAEA 489
F+ +++T FD N IGFA A
Sbjct: 314 ATFIRKFYTEFDRRNNRIGFALA 336
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 126/238 (52%), Gaps = 11/238 (4%)
Query: 73 TMRTPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGT 129
T+ TP + + + GSSNLWVPS +C S+ NGT AIQYGT
Sbjct: 20 TLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASSSYKANGTEFAIQYGT 78
Query: 130 GAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 189
G++ G+ SQD + +GDL + QDF EAT E +TF KFDGILGLG+ IS+ K +P +
Sbjct: 79 GSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPF 138
Query: 190 YNMLDQGLVKEPVFSFWL-NRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEM 248
YN + Q L+ E F+F+L + D +KG+ T++PV +K YW+ +
Sbjct: 139 YNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKF 198
Query: 249 GDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGA----SGVISQECKT 302
+ + E S G A D+GTSL+ P+ + IN IGA +G + +C T
Sbjct: 199 EGIGLGDEYAELESHG--AAIDTGTSLITLPSGLAEMINAEIGAKKGSTGQYTLDCNT 254
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 403 GESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPL 462
G+ +DC+ ++P++ F G F + P +Y LEV + CIS T D P GPL
Sbjct: 246 GQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEV----SGSCISAITPMDFPEPVGPL 301
Query: 463 WILGDVFMGRYHTVFDYGNLSIGFAEA 489
I+GD F+ +Y++++D GN ++G A+A
Sbjct: 302 AIVGDAFLRKYYSIYDLGNNAVGLAKA 328
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 126/238 (52%), Gaps = 11/238 (4%)
Query: 73 TMRTPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGT 129
T+ TP + + + GSSNLWVPS +C S+ NGT AIQYGT
Sbjct: 20 TLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASSSYKANGTEFAIQYGT 78
Query: 130 GAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 189
G++ G+ SQD + +GDL + QDF EAT E +TF KFDGILGLG+ IS+ K +P +
Sbjct: 79 GSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPF 138
Query: 190 YNMLDQGLVKEPVFSFWL-NRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEM 248
YN + Q L+ E F+F+L + D +KG+ T++PV +K YW+ +
Sbjct: 139 YNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKF 198
Query: 249 GDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGA----SGVISQECKT 302
+ + E S G A D+GTSL+ P+ + IN IGA +G + +C T
Sbjct: 199 EGIGLGDEYAELESHG--AAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLDCNT 254
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 403 GESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPL 462
G+ +DC+ ++P++ F G F + P +Y LEV + CIS T D P GPL
Sbjct: 246 GQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEV----SGSCISAITPMDFPEPVGPL 301
Query: 463 WILGDVFMGRYHTVFDYGNLSIGFAEA 489
I+GD F+ +Y++++D GN ++G A+A
Sbjct: 302 AIVGDAFLRKYYSIYDIGNNAVGLAKA 328
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 126/238 (52%), Gaps = 11/238 (4%)
Query: 73 TMRTPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGT 129
T+ TP + + + GSSNLWVPS +C S+ NGT AIQYGT
Sbjct: 20 TLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASSSYKANGTEFAIQYGT 78
Query: 130 GAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 189
G++ G+ SQD + +GDL + QDF EAT E +TF KFDGILGLG+ IS+ K +P +
Sbjct: 79 GSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPF 138
Query: 190 YNMLDQGLVKEPVFSFWL-NRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEM 248
YN + Q L+ E F+F+L + D +KG+ T++PV +K YW+ +
Sbjct: 139 YNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKF 198
Query: 249 GDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGA----SGVISQECKT 302
+ + E S G A D+GTSL+ P+ + IN IGA +G + +C T
Sbjct: 199 EGIGLGDEYAELESHG--AAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLDCNT 254
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 403 GESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPL 462
G+ +DC+ ++P++ F G F + P +Y LEV + CIS T D P GPL
Sbjct: 246 GQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEV----SGSCISAITPMDFPEPVGPL 301
Query: 463 WILGDVFMGRYHTVFDYGNLSIGFAEA 489
I+GD F+ +Y++++D GN ++G A+A
Sbjct: 302 AIVGDAFLRKYYSIYDLGNNAVGLAKA 328
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 111/209 (53%), Gaps = 4/209 (1%)
Query: 85 GSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKV 143
GS+NLWVPS KC + NG I YG+G + GF SQD+V V
Sbjct: 37 GSANLWVPSTKCSRLYLACGIHSLYESSDSSSYMENGDDFTIHYGSGRVKGFLSQDSVTV 96
Query: 144 GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVF 203
G + V Q F E T+ I F+ A+FDG+LG+GF ++G PV+ ++L QG++KE VF
Sbjct: 97 GGITV-TQTFGEVTQLPLIPFMLAQFDGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVF 155
Query: 204 SFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCST 263
S + NR DP HY+G+ YV ++K WQ M V + G +T C
Sbjct: 156 SVYYNRG-PHLLGGEVVLGGSDPQHYQGDFHYVSLSKTDSWQITMKGVSV-GSSTLLCEE 213
Query: 264 GCNAIADSGTSLLAGPTTIITQINHAIGA 292
GC + D+G+S ++ PT+ + I A+GA
Sbjct: 214 GCEVVVDTGSSFISAPTSSLKLIMQALGA 242
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%)
Query: 404 ESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLW 463
E V C + ++P++SF +GG+ + L+ +YVL+ C A D+ PP GP+W
Sbjct: 249 EYVVSCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGPVW 308
Query: 464 ILGDVFMGRYHTVFDYGNLSIGFAEA 489
+LG F+ +++T FD N IGFA A
Sbjct: 309 VLGATFIRKFYTEFDRHNNRIGFALA 334
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 113/223 (50%), Gaps = 7/223 (3%)
Query: 74 MRTPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTG 130
+ TP + + + GSSNLWVPS C S+ +I YGTG
Sbjct: 20 IGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTFEATSQELSITYGTG 78
Query: 131 AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWY 190
+++G D V+VG + NQ F + E A FDGILGL + IS A PV+
Sbjct: 79 SMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFD 138
Query: 191 NMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGD 250
N+ DQGLV + +FS +L+ + D +Y G +VPV+ +GYWQ +
Sbjct: 139 NLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDS 196
Query: 251 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 293
+ +DGET CS GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 197 ITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 402 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGP 461
+GE + C ++ S+P++ FTI G + L+P+ Y+L+ + C SGF DV G
Sbjct: 242 DGEMVISCSSIDSLPDIVFTINGVQYPLSPSAYILQDDD----SCTSGFEGMDVPTSSGE 297
Query: 462 LWILGDVFMGRYHTVFDYGNLSIGFAEAA 490
LWILGDVF+ +Y+TVFD N +G A A
Sbjct: 298 LWILGDVFIRQYYTVFDRANNKVGLAPVA 326
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 113/223 (50%), Gaps = 7/223 (3%)
Query: 74 MRTPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTG 130
+ TP + + + GSSNLWVPS C S+ +I YGTG
Sbjct: 20 IGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTFEATSQELSITYGTG 78
Query: 131 AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWY 190
+++G D V+VG + NQ F + E A FDGILGL + IS A PV+
Sbjct: 79 SMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFD 138
Query: 191 NMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGD 250
N+ DQGLV + +FS +L+ + D +Y G +VPV+ +GYWQ +
Sbjct: 139 NLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDS 196
Query: 251 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 293
+ +DGET CS GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 197 ITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 402 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGP 461
+GE + C ++ S+P++ FTI G + L+P+ Y+L+ + C SGF DV G
Sbjct: 242 DGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDD----SCTSGFEGMDVPTSSGE 297
Query: 462 LWILGDVFMGRYHTVFDYGNLSIGFAEAA 490
LWILGDVF+ +Y+TVFD N +G A A
Sbjct: 298 LWILGDVFIRQYYTVFDRANNKVGLAPVA 326
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 113/223 (50%), Gaps = 7/223 (3%)
Query: 74 MRTPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTG 130
+ TP + + + GSSNLWVPS C S+ +I YGTG
Sbjct: 20 IGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTFEATSQELSITYGTG 78
Query: 131 AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWY 190
+++G D V+VG + NQ F + E A FDGILGL + IS A PV+
Sbjct: 79 SMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFD 138
Query: 191 NMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGD 250
N+ DQGLV + +FS +L+ + D +Y G +VPV+ +GYWQ +
Sbjct: 139 NLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDS 196
Query: 251 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 293
+ +DGET CS GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 197 ITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 402 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGP 461
+GE + C +++S+P++ FTI G + L+P+ Y+L+ + C SGF DV G
Sbjct: 242 DGEMVISCSSIASLPDIVFTINGVQYPLSPSAYILQDDD----SCTSGFEGMDVPTSSGE 297
Query: 462 LWILGDVFMGRYHTVFDYGNLSIGFAEAA 490
LWILGDVF+ +Y+TVFD N +G A A
Sbjct: 298 LWILGDVFIRQYYTVFDRANNKVGLAPVA 326
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 112/221 (50%), Gaps = 7/221 (3%)
Query: 76 TPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAI 132
TP + + + GSSNLWVPS C S+ +I YGTG++
Sbjct: 66 TPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTFEATSQELSITYGTGSM 124
Query: 133 SGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNM 192
+G D V+VG + NQ F + E A FDGILGL + IS A PV+ N+
Sbjct: 125 TGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNL 184
Query: 193 LDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVL 252
DQGLV + +FS +L+ + D +Y G +VPV+ +GYWQ + +
Sbjct: 185 WDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSIT 242
Query: 253 IDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 293
+DGET CS GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 243 MDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 282
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 402 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGP 461
+GE + C ++ S+P++ FTI G + L+P+ Y+L+ + C SGF DV G
Sbjct: 286 DGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDD----SCTSGFEGMDVPTSSGE 341
Query: 462 LWILGDVFMGRYHTVFDYGNLSIGFAEAA 490
LWILGDVF+ +Y+TVFD N +G A A
Sbjct: 342 LWILGDVFIRQYYTVFDRANNKVGLAPVA 370
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 113/223 (50%), Gaps = 7/223 (3%)
Query: 74 MRTPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTG 130
+ TP + + + GSSNLWVPS C S+ +I YGTG
Sbjct: 20 IGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTFEATXQELSITYGTG 78
Query: 131 AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWY 190
+++G D V+VG + NQ F + E A FDGILGL + IS A PV+
Sbjct: 79 SMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFD 138
Query: 191 NMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGD 250
N+ DQGLV + +FS +L+ + D +Y G +VPV+ +GYWQ +
Sbjct: 139 NLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDS 196
Query: 251 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 293
+ +DGET CS GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 197 ITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 402 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGP 461
+GE + C ++ S+P++ FTI G + L+P+ Y+L+ + C SGF DV G
Sbjct: 242 DGEMVISCSSIDSLPDIVFTINGVQYPLSPSAYILQDDD----SCTSGFEGMDVPTSSGE 297
Query: 462 LWILGDVFMGRYHTVFDYGNLSIGFAEAA 490
LWILGDVF+ +Y+TVFD N +G A A
Sbjct: 298 LWILGDVFIRQYYTVFDRANNKVGLAPVA 326
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 113/223 (50%), Gaps = 7/223 (3%)
Query: 74 MRTPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTG 130
+ TP + + + GSSNLWVPS C S+ +I YGTG
Sbjct: 20 IGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTFEATXQELSITYGTG 78
Query: 131 AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWY 190
+++G D V+VG + NQ F + E A FDGILGL + IS A PV+
Sbjct: 79 SMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFD 138
Query: 191 NMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGD 250
N+ DQGLV + +FS +L+ + D +Y G +VPV+ +GYWQ +
Sbjct: 139 NLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDS 196
Query: 251 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 293
+ +DGET CS GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 197 ITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 402 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGP 461
+GE + C ++ S+P++ FTI G + L+P+ Y+L+ + C SGF DV G
Sbjct: 242 DGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDD----SCTSGFEGMDVPTSSGE 297
Query: 462 LWILGDVFMGRYHTVFDYGNLSIGFAEAA 490
LWILGDVF+ +Y+TVFD N +G A A
Sbjct: 298 LWILGDVFIRQYYTVFDRANNKVGLAPVA 326
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 112/221 (50%), Gaps = 7/221 (3%)
Query: 76 TPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAI 132
TP + + + GSSNLWVPS C S+ +I YGTG++
Sbjct: 66 TPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTFEATXQELSITYGTGSM 124
Query: 133 SGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNM 192
+G D V+VG + NQ F + E A FDGILGL + IS A PV+ N+
Sbjct: 125 TGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNL 184
Query: 193 LDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVL 252
DQGLV + +FS +L+ + D +Y G +VPV+ +GYWQ + +
Sbjct: 185 WDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSIT 242
Query: 253 IDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 293
+DGET CS GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 243 MDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 282
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 402 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGP 461
+GE + C ++ S+P++ FTI G + L+P+ Y+L+ + C SGF DV G
Sbjct: 286 DGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDD----SCTSGFEGMDVPTSSGE 341
Query: 462 LWILGDVFMGRYHTVFDYGNLSIGFAEAA 490
LWILGDVF+ +Y+TVFD N +G A A
Sbjct: 342 LWILGDVFIRQYYTVFDRANNKVGLAPVA 370
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 119/228 (52%), Gaps = 12/228 (5%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVG 144
GSSNLWVPS C S NG + ++QYG+G+++GFF D + V
Sbjct: 34 GSSNLWVPSVYCQ-SQACTSHSRFNPSESSTYSTNGQTFSLQYGSGSLTGFFGYDTLTVQ 92
Query: 145 DLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFS 204
+ V NQ+F + E F+ A+FDGI+GL + +S+ +A M+ +G + PVFS
Sbjct: 93 SIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFS 152
Query: 205 FWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTG 264
+L+ + D Y G+ + PVT++ YWQ + + LI G+ +G+CS G
Sbjct: 153 VYLS-NQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEG 211
Query: 265 CNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTIL 312
C AI D+GTSLL P ++ + A GA QE D+YG+ ++
Sbjct: 212 CQAIVDTGTSLLTVPQQYMSALLQATGA-----QE-----DEYGQFLV 249
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 403 GESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRG-P 461
G+ V+C+++ ++P+++F I G F L P+ Y+L C G ++ G P
Sbjct: 245 GQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILSNN----GYCTVGVEPTYLSSQNGQP 300
Query: 462 LWILGDVFMGRYHTVFDYGNLSIGFAEAA 490
LWILGDVF+ Y++V+D GN +GFA AA
Sbjct: 301 LWILGDVFLRSYYSVYDLGNNRVGFATAA 329
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 113/223 (50%), Gaps = 7/223 (3%)
Query: 74 MRTPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTG 130
+ TP + + + GSSNLWVPS C S+ + +I YGTG
Sbjct: 20 IGTPAQDFTVVFDTGSSNLWVPSVYCS-SLACTNHNRFNPEDSSTYQSTSETVSITYGTG 78
Query: 131 AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWY 190
+++G D V+VG + NQ F + E A FDGILGL + IS A PV+
Sbjct: 79 SMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFD 138
Query: 191 NMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGD 250
N+ +QGLV + +FS +L+ D D +Y G +VPVT +GYWQ +
Sbjct: 139 NIWNQGLVSQDLFSVYLSAD--DQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDS 196
Query: 251 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 293
+ ++GE C+ GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 197 ITMNGEAIA-CAEGCQAIVDTGTSLLTGPTSPIANIQSDIGAS 238
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 402 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGP 461
+G+ V C +SS+P++ FTI G + + P+ Y+L+ EG CISGF +V G
Sbjct: 242 DGDMVVSCSAISSLPDIVFTINGVQYPVPPSAYILQ-SEG---SCISGFQGMNVPTESGE 297
Query: 462 LWILGDVFMGRYHTVFDYGNLSIGFAEAA 490
LWILGDVF+ +Y TVFD N +G A A
Sbjct: 298 LWILGDVFIRQYFTVFDRANNQVGLAPVA 326
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 113/223 (50%), Gaps = 7/223 (3%)
Query: 74 MRTPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTG 130
+ TP + + + GSSNLWVPS C S+ + +I YGTG
Sbjct: 20 IGTPAQDFTVVFDTGSSNLWVPSVYCS-SLACTNHNRFNPEDSSTYQSTSETVSITYGTG 78
Query: 131 AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWY 190
+++G D V+VG + NQ F + E A FDGILGL + IS A PV+
Sbjct: 79 SMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFD 138
Query: 191 NMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGD 250
N+ +QGLV + +FS +L+ D D +Y G +VPVT +GYWQ +
Sbjct: 139 NIWNQGLVSQDLFSVYLSAD--DQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDS 196
Query: 251 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 293
+ ++GE C+ GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 197 ITMNGEAIA-CAEGCQAIVDTGTSLLTGPTSPIANIQSDIGAS 238
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 402 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGP 461
+G+ V C +SS+P++ FTI G + + P+ Y+L+ EG CISGF ++ G
Sbjct: 242 DGDMVVSCSAISSLPDIVFTINGVQYPVPPSAYILQ-SEG---SCISGFQGMNLPTESGE 297
Query: 462 LWILGDVFMGRYHTVFDYGNLSIGFAEAA 490
LWILGDVF+ +Y TVFD N +G A A
Sbjct: 298 LWILGDVFIRQYFTVFDRANNQVGLAPVA 326
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 114/210 (54%), Gaps = 7/210 (3%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRN-GTSAAIQYGTGAISGFFSQDNVKV 143
GSS+LWVPS C +V RN G +I YGTG++ GF D V V
Sbjct: 33 GSSDLWVPSIYCKSNVCKNHHRFDPRKSSTF--RNLGKPLSIHYGTGSMEGFLGYDTVTV 90
Query: 144 GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVF 203
++V NQ +T++ F ++FDGILGL + ++ ++PV+ NM+D+ LV +F
Sbjct: 91 SNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVARDLF 150
Query: 204 SFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCST 263
S +++R+ DP +Y G +VPVT + YWQF + V I+G C
Sbjct: 151 SVYMDRN---GQGSMLTLGAIDPSYYTGSLHWVPVTLQQYWQFTVDSVTINGVAVA-CVG 206
Query: 264 GCNAIADSGTSLLAGPTTIITQINHAIGAS 293
GC AI D+GTS+L GP++ I +I AIGA+
Sbjct: 207 GCQAILDTGTSVLFGPSSDILKIQMAIGAT 236
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 403 GESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPL 462
GE V+C NL SMP V F I G+ + L+P+ Y + +G C SGF + L
Sbjct: 241 GEFDVNCGNLRSMPTVVFEINGRDYPLSPSAYTSK-DQGF---CTSGFQGDN----NSEL 292
Query: 463 WILGDVFMGRYHTVFDYGNLSIGFAEA 489
WILGDVF+ Y++VFD N +G A+A
Sbjct: 293 WILGDVFIREYYSVFDRANNRVGLAKA 319
>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|D Chain D, Native Cardosin A From Cynara Cardunculus L
Length = 87
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 70/87 (80%), Gaps = 1/87 (1%)
Query: 404 ESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLW 463
E VDC+ LSSMPNVSFTIGGK F L P +Y+L+VG+G A QCISGFTA D A GPLW
Sbjct: 2 ELQVDCNTLSSMPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMD-ATLLGPLW 60
Query: 464 ILGDVFMGRYHTVFDYGNLSIGFAEAA 490
ILGDVFM YHTVFDYGNL +GFAEAA
Sbjct: 61 ILGDVFMRPYHTVFDYGNLLVGFAEAA 87
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 144 GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVF 203
G + V+ Q F EATK+ ITF+AAKFDGILG+ + IS+ +PV+ N++ Q LV + +F
Sbjct: 1 GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIF 60
Query: 204 SFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCST 263
SF+L+RD D +YKG +Y+ VT+K YWQ + V + T C
Sbjct: 61 SFYLSRDPDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLT-LCKE 119
Query: 264 GCNAIADSGTSLLAGPTTIITQINHAIGASGVISQE 299
GC AI D+GTSL+ GP + ++ AIGA +I E
Sbjct: 120 GCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGE 155
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 64/93 (68%)
Query: 398 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAP 457
+P GE + C+ +S++P ++ +GGK + L+P +Y L+V + C+SGF D+ P
Sbjct: 149 VPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPP 208
Query: 458 PRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 490
P GPLWILGDVF+GRY+TVFD N +GFAEAA
Sbjct: 209 PSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 241
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 112/223 (50%), Gaps = 8/223 (3%)
Query: 74 MRTPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTG 130
+ TP + + + GSS+ WVPS C S G +I YGTG
Sbjct: 22 LGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSSTFQNLGKPLSIHYGTG 80
Query: 131 AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWY 190
++ G D V V ++V Q +T+E F A+FDGILG+ + ++ +IPV+
Sbjct: 81 SMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILGMAYPSLASEYSIPVFD 140
Query: 191 NMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGD 250
NM+++ LV + +FS +++R+ DP +Y G +VPVT + YWQF +
Sbjct: 141 NMMNRHLVAQDLFSVYMDRN---GQESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDS 197
Query: 251 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 293
V I G C GC AI D+GTS L GP++ I I AIGA+
Sbjct: 198 VTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAIGAT 239
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 8/87 (9%)
Query: 403 GESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPL 462
GE +DCDNLS MP V F I GK++ L P+ Y + +G C SGF + +
Sbjct: 244 GEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQ-DQGF---CTSGFQSEN----HSQK 295
Query: 463 WILGDVFMGRYHTVFDYGNLSIGFAEA 489
WILGDVF+ Y++VFD N +G A+A
Sbjct: 296 WILGDVFIREYYSVFDRANNLVGLAKA 322
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 112/223 (50%), Gaps = 8/223 (3%)
Query: 74 MRTPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTG 130
+ TP + + + GSS+ WVPS C S G +I YGTG
Sbjct: 22 LGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSSTFQNLGKPLSIHYGTG 80
Query: 131 AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWY 190
++ G D V V ++V Q +T+E F A+FDGILG+ + ++ +IPV+
Sbjct: 81 SMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFD 140
Query: 191 NMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGD 250
NM+++ LV + +FS +++R+ DP +Y G +VPVT + YWQF +
Sbjct: 141 NMMNRHLVAQDLFSVYMDRN---GQESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDS 197
Query: 251 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 293
V I G C GC AI D+GTS L GP++ I I AIGA+
Sbjct: 198 VTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAIGAT 239
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 384 ADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVA 443
+ ILN + Q + GE +DCDNLS MP V F I GK++ L P+ Y + +G
Sbjct: 226 SSDILN-IQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQ-DQGF- 282
Query: 444 AQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 489
C SGF + + WILGDVF+ Y++VFD N +G A+A
Sbjct: 283 --CTSGFQSEN----HSQKWILGDVFIREYYSVFDRANNLVGLAKA 322
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 106/224 (47%), Gaps = 8/224 (3%)
Query: 73 TMRTPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGT 129
++ TP + + GSSNLWV S+ C + G + + YGT
Sbjct: 19 SIGTPPESFKVIFDTGSSNLWVSSSHCS-AQACSNHNKFKPRQSSTYVETGKTVDLTYGT 77
Query: 130 GAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 189
G + G QD V VG NQ+ E+ E AA FDGILGL + I+ A+PV+
Sbjct: 78 GGMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVF 137
Query: 190 YNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMG 249
NM Q LV++ +FSF+L+ D HY G ++PVT + YWQ +
Sbjct: 138 DNMGSQSLVEKDLFSFYLS--GGGANGSEVMLGGVDNSHYTGSIHWIPVTAEKYWQVALD 195
Query: 250 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 293
+ ++G+T GC AI D+GTS + P + + I IGAS
Sbjct: 196 GITVNGQTA--ACEGCQAIVDTGTSKIVAPVSALANIMKDIGAS 237
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 362 AMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPN-GESAVDCDNLSSMPNVSF 420
A C C+ V +K+ +A N + D S N GE +C ++ S+P+++F
Sbjct: 204 AACEGCQAIVDTGTSKIVAPVSA-----LANIMKDIGASENQGEMMGNCASVQSLPDITF 258
Query: 421 TIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYG 480
TI G L P+ Y+ EG A C SG + V LWI GDVF+ Y+T++D
Sbjct: 259 TINGVKQPLPPSAYI----EGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRT 314
Query: 481 NLSIGFAEAA 490
N +GFA AA
Sbjct: 315 NNKVGFAPAA 324
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 2/127 (1%)
Query: 85 GSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKV 143
GSSN+WVPS+KC NGT ++Y TG +SGF SQD + V
Sbjct: 40 GSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITV 99
Query: 144 GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVF 203
G + V Q F E T+ ++ F+ A+FDG++G+GF E +IG+ P++ N++ QG++KE VF
Sbjct: 100 GGITV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVF 158
Query: 204 SFWLNRD 210
SF+ NRD
Sbjct: 159 SFYYNRD 165
>pdb|3RFI|A Chain A, Crystal Structure Of The Saposin-Like Domain Of Plant
Aspartic Protease From Solanum Tuberosum
Length = 108
Score = 103 bits (256), Expect = 3e-22, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 2/108 (1%)
Query: 292 ASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIEXXXXXXX 351
A ++S ECKT+V QYG+ I ++L++ +P ++CSQ GLC DG + S I+
Sbjct: 3 AMAIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIKTVVERET 62
Query: 352 XXXXXXXXXXAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLP 399
+C+ACEMAV+WMQN+L++ T +++L YVNQLC+++P
Sbjct: 63 EGSSVGEA--PLCTACEMAVVWMQNQLKQEGTKEKVLEYVNQLCEKIP 108
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 11/204 (5%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVG 144
GS+NLWVPS C S+ ++GT I YG+G + G+FS+D + +G
Sbjct: 36 GSANLWVPSVNCD-SIGCSTKHLYDASASKSYEKDGTKVEISYGSGTVRGYFSKDVISLG 94
Query: 145 DLVVKNQDFIEATKEASIT--FLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPV 202
DL + + FIE T + + ++FDGILGLG++++SIG PV + Q + +
Sbjct: 95 DLSLPYK-FIEVTDADDLEPIYSGSEFDGILGLGWKDLSIGSIDPVVVELKKQNKIDNAL 153
Query: 203 FSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCS 262
F+F+L + D Y+G TY + YWQ ++ D Y
Sbjct: 154 FTFYLP--VHDKHVGYLTIGGIESDFYEGPLTYEKLNHDLYWQIDL-----DIHFGKYVM 206
Query: 263 TGCNAIADSGTSLLAGPTTIITQI 286
NA+ DSGTS + PT+ + +
Sbjct: 207 QKANAVVDSGTSTITAPTSFLNKF 230
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 409 CDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDV 468
CDN +P + F + L P Y+ + + A C+ D+ +ILGD
Sbjct: 249 CDN-DDLPTLEFHSRNNKYTLEPEFYMDPLSDIDPALCMLYILPVDI---DDNTFILGDP 304
Query: 469 FMGRYHTVFDYGNLSIGFAEA 489
FM +Y TVFDY S+GFA A
Sbjct: 305 FMRKYFTVFDYEKESVGFAVA 325
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 104/204 (50%), Gaps = 11/204 (5%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVG 144
GS+NLWVPS KC S+ ++GT I YG+G + GFFS+D V +G
Sbjct: 36 GSANLWVPSKKCN-SIGCSTKHLYDSSKSKSYEKDGTKVEITYGSGTVRGFFSKDLVTLG 94
Query: 145 DLVVKNQDFIEATKEASIT--FLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPV 202
L + + FIE T + + AA+FDGILGLG++++SIG P+ + +Q + + +
Sbjct: 95 YLSLPYK-FIEVTDTDDLEPLYTAAEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDQAL 153
Query: 203 FSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCS 262
F+F+L + Y+GE TY + +WQ ++ DV G+T+
Sbjct: 154 FTFYL--PVHDKHSGYLTIGGIEEKFYEGELTYEKLNHDLFWQVDL-DVNF-GKTS---M 206
Query: 263 TGCNAIADSGTSLLAGPTTIITQI 286
N I DSGTS + PT+ I +
Sbjct: 207 EKANVIVDSGTSTITAPTSFINKF 230
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 409 CDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDV 468
C+N MP + F + L P Y+ + + C+ D+ +ILGD
Sbjct: 249 CNN-KDMPTLEFKSANNTYTLEPEYYMEPLLDIDDTLCMLYILPVDIDKNT---FILGDP 304
Query: 469 FMGRYHTVFDYGNLSIGFAEA 489
FM +Y TVFDY SIGFA A
Sbjct: 305 FMRKYFTVFDYDKESIGFAVA 325
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 11/204 (5%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVG 144
GS+NLWVPS KC + ++GT + Y +G +SGFFS+D V VG
Sbjct: 160 GSANLWVPSVKCT-TAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVG 218
Query: 145 DLVVKNQDFIEA--TKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPV 202
+L + + FIE T T+ A+ FDGILGLG++++SIG P+ + +Q ++ +
Sbjct: 219 NLSLPYK-FIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENAL 277
Query: 203 FSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCS 262
F+F+L + Y+G TY + YWQ + +D
Sbjct: 278 FTFYL--PVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQ-----ITLDAHVGNIML 330
Query: 263 TGCNAIADSGTSLLAGPTTIITQI 286
N I DSGTS + PT + ++
Sbjct: 331 EKANCIVDSGTSAITVPTDFLNKM 354
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 388 LNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCI 447
LN + Q D + P V N S +P FT + L P Y+ + + C+
Sbjct: 351 LNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCM 410
Query: 448 SGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 489
D P +ILGD FM +Y TVFDY N S+G A A
Sbjct: 411 LNIIGLDFPVPT---FILGDPFMRKYFTVFDYDNHSVGIALA 449
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 11/204 (5%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVG 144
GS+NLWVPS KC + ++GT + Y +G +SGFFS+D V VG
Sbjct: 87 GSANLWVPSVKCT-TAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVG 145
Query: 145 DLVVKNQDFIEA--TKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPV 202
+L + + FIE T T+ A+ FDGILGLG++++SIG P+ + +Q ++ +
Sbjct: 146 NLSLPYK-FIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENAL 204
Query: 203 FSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCS 262
F+F+L + Y+G TY + YWQ + +D
Sbjct: 205 FTFYL--PVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQ-----ITLDAHVGNIML 257
Query: 263 TGCNAIADSGTSLLAGPTTIITQI 286
N I DSGTS + PT + ++
Sbjct: 258 EKANCIVDSGTSAITVPTDFLNKM 281
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 386 QILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQ 445
LN + Q D + P V N S +P FT + L P Y+ + +
Sbjct: 276 DFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGL 335
Query: 446 CISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 489
C+ D P +ILGD FM +Y TVFDY N S+G A A
Sbjct: 336 CMLNIIGLDFPVPT---FILGDPFMRKYFTVFDYDNHSVGIALA 376
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 11/204 (5%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVG 144
GS+NLWVPS KC + ++GT + Y +G +SGFFS+D V VG
Sbjct: 36 GSANLWVPSVKCT-TAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVG 94
Query: 145 DLVVKNQDFIEA--TKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPV 202
+L + + FIE T T+ A+ FDGILGLG++++SIG P+ + +Q ++ +
Sbjct: 95 NLSLPYK-FIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENAL 153
Query: 203 FSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCS 262
F+F+L + Y+G TY + YWQ + +D
Sbjct: 154 FTFYL--PVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQ-----ITLDAHVGNISL 206
Query: 263 TGCNAIADSGTSLLAGPTTIITQI 286
N I DSGTS + PT + ++
Sbjct: 207 EKANCIVDSGTSAITVPTDFLNKM 230
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 386 QILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQ 445
LN + Q D + P V N S +P FT + L P Y+ + +
Sbjct: 225 DFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGL 284
Query: 446 CISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 489
C+ D P +ILGD FM +Y TVFDY N S+G A A
Sbjct: 285 CMLNIIGLDFPVPT---FILGDPFMRKYFTVFDYDNHSVGIALA 325
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 11/204 (5%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVG 144
GS+NLWVPS KC + ++GT + Y +G +SGFFS+D V VG
Sbjct: 38 GSANLWVPSVKCT-TAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVG 96
Query: 145 DLVVKNQDFIEA--TKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPV 202
+L + + FIE T T+ A+ FDGILGLG++++SIG P+ + +Q ++ +
Sbjct: 97 NLSLPYK-FIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENAL 155
Query: 203 FSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCS 262
F+F+L + Y+G TY + YWQ + +D
Sbjct: 156 FTFYL--PVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQ-----ITLDAHVGNISL 208
Query: 263 TGCNAIADSGTSLLAGPTTIITQI 286
N I DSGTS + PT + ++
Sbjct: 209 EKANCIVDSGTSAITVPTDFLNKM 232
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 386 QILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQ 445
LN + Q D + P V N S +P FT + L P Y+ + +
Sbjct: 227 DFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGL 286
Query: 446 CISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 489
C+ D P +ILGD FM +Y TVFDY N S+G A A
Sbjct: 287 CMLNIIGLDFPVPT---FILGDPFMRKYFTVFDYDNHSVGIALA 327
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 11/204 (5%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVG 144
GS+NLWVPS KC + ++GT + Y +G +SGFFS+D V VG
Sbjct: 36 GSANLWVPSVKCT-TAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVG 94
Query: 145 DLVVKNQDFIEA--TKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPV 202
+L + + FIE T T+ A+ FDGILGLG++++SIG P+ + +Q ++ +
Sbjct: 95 NLSLPYK-FIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENAL 153
Query: 203 FSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCS 262
F+F+L + Y+G TY + YWQ + +D
Sbjct: 154 FTFYL--PVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQ-----ITLDAHVGNIML 206
Query: 263 TGCNAIADSGTSLLAGPTTIITQI 286
N I DSGTS + PT + ++
Sbjct: 207 EKANCIVDSGTSAITVPTDFLNKM 230
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 386 QILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQ 445
LN + Q D + P V N S +P FT + L P Y+ + +
Sbjct: 225 DFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGL 284
Query: 446 CISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 489
C+ D P +ILGD FM +Y TVFDY N S+G A A
Sbjct: 285 CMLNIIGLDFPVPT---FILGDPFMRKYFTVFDYDNHSVGIALA 325
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 11/204 (5%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVG 144
GS+NLWVPS KC + ++GT + Y +G +SGFFS+D V VG
Sbjct: 38 GSANLWVPSVKCT-TAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVG 96
Query: 145 DLVVKNQDFIEA--TKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPV 202
+L + + FIE T T+ A+ FDGILGLG++++SIG P+ + +Q ++ +
Sbjct: 97 NLSLPYK-FIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENAL 155
Query: 203 FSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCS 262
F+F+L + Y+G TY + YWQ + +D
Sbjct: 156 FTFYL--PVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQ-----ITLDAHVGNIML 208
Query: 263 TGCNAIADSGTSLLAGPTTIITQI 286
N I DSGTS + PT + ++
Sbjct: 209 EKANCIVDSGTSAITVPTDFLNKM 232
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 386 QILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQ 445
LN + Q D + P V N S +P FT + L P Y+ + +
Sbjct: 227 DFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGL 286
Query: 446 CISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 489
C+ D P +ILGD FM +Y TVFDY N S+G A A
Sbjct: 287 CMLNIIGLDFPVPT---FILGDPFMRKYFTVFDYDNHSVGIALA 327
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 102/208 (49%), Gaps = 19/208 (9%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVG 144
GS+NLWVPSA+C ++ ++GT + Y +G +SGFFS+D V +
Sbjct: 43 GSANLWVPSAQCN-TIGCKTKNLYDSNKSKTYEKDGTKVEMNYVSGTVSGFFSKDIVTIA 101
Query: 145 DLVVKNQDFIEATKEASI--TFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPV 202
+L + FIE T + +FDGI+GLG++++SIG PV + +Q +++ V
Sbjct: 102 NLSFPYK-FIEVTDTNGFEPAYTLGQFDGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAV 160
Query: 203 FSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEM----GDVLIDGETT 258
F+F+L D + Y+G+ TY + YWQ ++ G++ ++ T
Sbjct: 161 FTFYLPFD--DKHKGYLTIGGIEDRFYEGQLTYEKLNHDLYWQVDLDLHFGNLTVEKAT- 217
Query: 259 GYCSTGCNAIADSGTSLLAGPTTIITQI 286
AI DSGTS + PT + +
Sbjct: 218 --------AIVDSGTSSITAPTEFLNKF 237
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 409 CDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDV 468
C+N +P + F V+ L P Y+ ++ + + C+ D+ +ILGD
Sbjct: 256 CNN-PKLPTLEFRSATNVYTLEPEYYLQQIFDFGISLCMVSIIPVDL---NKNTFILGDP 311
Query: 469 FMGRYHTVFDYGNLSIGFAEA 489
FM +Y TVFDY N ++GFA A
Sbjct: 312 FMRKYFTVFDYDNHTVGFALA 332
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 97/204 (47%), Gaps = 11/204 (5%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVG 144
GS+NLWVPS KC S ++GT I YG+G + GFFS+D V +G
Sbjct: 84 GSANLWVPSKKCN-SSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFFSKDLVTLG 142
Query: 145 DLVVKNQDFIEATKEASIT--FLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPV 202
L + + FIE T + + + +FDGILGLG++++SIG P+ + +Q + +
Sbjct: 143 HLSMPYK-FIEVTDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNAL 201
Query: 203 FSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCS 262
F+F+L + Y+G TY + YWQ ++ DV +T
Sbjct: 202 FTFYL--PVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDL-DVHFGKQTM---- 254
Query: 263 TGCNAIADSGTSLLAGPTTIITQI 286
N I DSGT+ + P+ + +
Sbjct: 255 EKANVIVDSGTTTITAPSEFLNKF 278
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 409 CDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDV 468
CDN MP + F + L P Y+ + E C+ D+ +ILGD
Sbjct: 297 CDN-KEMPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDI---DSNTFILGDP 352
Query: 469 FMGRYHTVFDYGNLSIGFAEA 489
FM +Y TVFDY S+GFA A
Sbjct: 353 FMRKYFTVFDYDKESVGFAIA 373
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 21/242 (8%)
Query: 73 TMRTPVRRYNLH---GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGT 129
T+ TP +++NL GSS+LW+ S C + +G + +I YG
Sbjct: 22 TIGTPGKKFNLDFDTGSSDLWIASTLC--TNCGSRQTKYDPNQSSTYQADGRTWSISYGD 79
Query: 130 GA-ISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPV 188
G+ SG ++DNV +G L++K Q IE K + +F + DG+LGLGF I+ + +
Sbjct: 80 GSSASGILAKDNVNLGGLLIKGQT-IELAKREAASFASGPNDGLLGLGFDTITTVRGVKT 138
Query: 189 -WYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPV-TKKGYWQF 246
N++ QGL+ P+F +L + D +KG T VP+ +G+W
Sbjct: 139 PMDNLISQGLISRPIFGVYLGK-AKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWG- 196
Query: 247 EMGDVLIDGETTGYCSTGC--NAIADSGTSLLAGPTTIITQINHAIGAS----GVISQEC 300
+ +D T G + + I D+GT+LL P I + A GAS G + C
Sbjct: 197 ----ITVDRATVGTSTVASSFDGILDTGTTLLILPNNIAASVARAYGASDNGDGTYTISC 252
Query: 301 KT 302
T
Sbjct: 253 DT 254
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
Query: 402 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFT--AFDVAPPR 459
+G + CD P V F+I G F ++P+ V E +G QCI+GF +D A
Sbjct: 245 DGTYTISCDTSRFKPLV-FSINGASFQVSPDSLVFEEFQG---QCIAGFGYGNWDFA--- 297
Query: 460 GPLWILGDVFMGRYHTVFDYG 480
I+GD F+ + VF+ G
Sbjct: 298 ----IIGDTFLKNNYVVFNQG 314
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 97/203 (47%), Gaps = 11/203 (5%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVG 144
GS+NLWVPS KC S ++GT I YG+G + GFFS+D V +G
Sbjct: 38 GSANLWVPSKKCN-SSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFFSKDLVTLG 96
Query: 145 DLVVKNQDFIEA--TKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPV 202
L + + FIE T + + + +FDGILGLG++++SIG P+ + +Q + +
Sbjct: 97 HLSMPYK-FIEVIDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNAL 155
Query: 203 FSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCS 262
F+F+L + Y+G TY + YWQ ++ DV +T
Sbjct: 156 FTFYL--PVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDL-DVHFGKQTM---- 208
Query: 263 TGCNAIADSGTSLLAGPTTIITQ 285
N I DSGT+ + P+ + +
Sbjct: 209 EKANVIVDSGTTTITAPSEFLNK 231
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 409 CDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDV 468
CDN MP + F + L P Y+ + E C+ D+ +ILGD
Sbjct: 251 CDN-KEMPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDI---DSNTFILGDP 306
Query: 469 FMGRYHTVFDYGNLSIGFAEA 489
FM +Y TVFDY S+GFA A
Sbjct: 307 FMRKYFTVFDYDKESVGFAIA 327
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 21/242 (8%)
Query: 73 TMRTPVRRYNLH---GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGT 129
T+ TP +++NL GSS+LW+ S C + +G + +I YG
Sbjct: 22 TIGTPGKKFNLDFDTGSSDLWIASTLC--TNCGSGQTKYDPNQSSTYQADGRTWSISYGD 79
Query: 130 GA-ISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPV 188
G+ SG ++DNV +G L++K Q IE K + +F + DG+LGLGF I+ + +
Sbjct: 80 GSSASGILAKDNVNLGGLLIKGQT-IELAKREAASFASGPNDGLLGLGFDTITTVRGVKT 138
Query: 189 -WYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPV-TKKGYWQF 246
N++ QGL+ P+F +L + D +KG T VP+ +G+W
Sbjct: 139 PMDNLISQGLISRPIFGVYLGK-AKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWG- 196
Query: 247 EMGDVLIDGETTGYCSTGC--NAIADSGTSLLAGPTTIITQINHAIGAS----GVISQEC 300
+ +D T G + + I D+GT+LL P I + A GAS G + C
Sbjct: 197 ----ITVDRATVGTSTVASSFDGILDTGTTLLILPNNIAASVARAYGASDNGDGTYTISC 252
Query: 301 KT 302
T
Sbjct: 253 DT 254
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 402 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGP 461
+G + CD + P V F+I G F ++P+ V E +G QCI+GF +
Sbjct: 245 DGTYTISCDTSAFKPLV-FSINGASFQVSPDSLVFEEFQG---QCIAGFGYGNWG----- 295
Query: 462 LWILGDVFMGRYHTVFDYG 480
I+GD F+ + VF+ G
Sbjct: 296 FAIIGDTFLKNNYVVFNQG 314
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|B Chain B, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|D Chain D, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 176
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 407 VDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILG 466
V C+ ++P++SF +GGK + L +YV + C A D+ PP GP W LG
Sbjct: 87 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALG 146
Query: 467 DVFMGRYHTVFDYGNLSIGFAEA 489
F+ +++T FD N IGFA A
Sbjct: 147 ATFIRKFYTEFDRRNNRIGFALA 169
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 225 DPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIIT 284
DP HY+G Y+ + K G WQ +M V + G +T C GC A+ D+G S ++G T+ I
Sbjct: 12 DPQHYEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIE 70
Query: 285 QINHAIGA 292
++ A+GA
Sbjct: 71 KLMEALGA 78
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNS|B Chain B, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNT|A Chain A, Crystal Structure Of Pepstatin A Bound Histo-aspartic
Protease (hap) From Plasmodium Falciparum
pdb|3FNU|A Chain A, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|B Chain B, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|C Chain C, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|D Chain D, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 332
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 83/204 (40%), Gaps = 11/204 (5%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVG 144
SSN+WVPS KC S ++ T + G ISG FS+D V +G
Sbjct: 40 ASSNVWVPSIKCT-SESCESKNHYDSSKSKTYEKDDTPVKLTSKAGTISGIFSKDLVTIG 98
Query: 145 DLVVKNQDFIEATKEASIT--FLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPV 202
L V + FIE T+ + + DG+ GLG++++SIG P + Q +++ V
Sbjct: 99 KLSVPYK-FIEMTEIVGFEPFYSESDVDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAV 157
Query: 203 FSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCS 262
+S +L + + + G Y + WQ ++ D S
Sbjct: 158 YSIYLPPE--NKNKGYLTIGGIEERFFDGPLNYEKLNHDLMWQVDL-----DVHFGNVSS 210
Query: 263 TGCNAIADSGTSLLAGPTTIITQI 286
N I DS TS++ PT Q
Sbjct: 211 KKANVILDSATSVITVPTEFFNQF 234
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 409 CDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDV 468
C N + +P + + KV+ L P +Y+ + +A C+ D+ ++LGD
Sbjct: 253 CGN-TKLPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDL---EKNTFVLGDP 308
Query: 469 FMGRYHTVFDYGNLSIGFAEA 489
FM +Y TV+DY N ++GFA A
Sbjct: 309 FMRKYFTVYDYDNHTVGFALA 329
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 83/204 (40%), Gaps = 11/204 (5%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVG 144
SSN+WVPS KC S ++ T + G ISG FS+D V +G
Sbjct: 159 ASSNVWVPSIKCT-SESCESKNHYDSSKSKTYEKDDTPVKLTSKAGTISGIFSKDLVTIG 217
Query: 145 DLVVKNQDFIEATKEASIT--FLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPV 202
L V + FIE T+ + + DG+ GLG++++SIG P + Q +++ V
Sbjct: 218 KLSVPYK-FIEMTEIVGFEPFYSESDVDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAV 276
Query: 203 FSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCS 262
+S +L + + + G Y + WQ V +D S
Sbjct: 277 YSIYLPPE--NKNKGYLTIGGIEERFFDGPLNYEKLNHDLMWQ-----VDLDVHFGNVSS 329
Query: 263 TGCNAIADSGTSLLAGPTTIITQI 286
N I DS TS++ PT Q
Sbjct: 330 KKANVILDSATSVITVPTEFFNQF 353
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 409 CDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDV 468
C N + +P + + KV+ L P +Y+ + +A C+ D+ ++LGD
Sbjct: 372 CGN-TKLPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDL---EKNTFVLGDP 427
Query: 469 FMGRYHTVFDYGNLSIGFAEA 489
FM +Y TV+DY N ++GFA A
Sbjct: 428 FMRKYFTVYDYDNHTVGFALA 448
>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3
Length = 334
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 9/168 (5%)
Query: 127 YGTGAISGFFSQDNVKVGDLVVKNQDFI---EATKEASITFLAAKFDGILGLGFQEISIG 183
+ TG+ G +D++ + L QD + E ++E I A GI G G
Sbjct: 81 FDTGSAVGRGIEDSLTISQLTTSQQDIVLADELSQEVCI-LSADVVVGIAAPGCPNALKG 139
Query: 184 KAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGY 243
K V N +++ L+ PVFS R D + GE TYVP+
Sbjct: 140 KT--VLENFVEENLIA-PVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVGDDS 196
Query: 244 WQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIG 291
W+F + V I G+TT G AI D+ +++ GP + IN AIG
Sbjct: 197 WKFRLDGVKI-GDTT-VAPAGTQAIIDTSKAIIVGPKAYVNPINEAIG 242
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 407 VDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILG 466
+DC + S+P+V+F I G+ F+++ Y+ + G C SGF + +G
Sbjct: 256 LDCSKIPSLPDVTFVINGRNFNISSQYYIQQNGN----LCYSGFQPCG----HSDHFFIG 307
Query: 467 DVFMGRYHTVFDYGNLSIGFAEA 489
D F+ Y++ F++ N ++GF +
Sbjct: 308 DFFVDHYYSEFNWENKTMGFGRS 330
>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2
pdb|2NR6|A Chain A, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
pdb|2NR6|B Chain B, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
Length = 330
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 9/168 (5%)
Query: 127 YGTGAISGFFSQDNVKVGDLVVKNQDFI---EATKEASITFLAAKFDGILGLGFQEISIG 183
+ TG+ G +D++ + L QD + E ++E I A GI G G
Sbjct: 79 FDTGSAVGRGIEDSLTISQLTTSQQDIVLADELSQEVCI-LSADVVVGIAAPGCPNALKG 137
Query: 184 KAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGY 243
K V N +++ L+ PVFS R D + GE TYVP+
Sbjct: 138 KT--VLENFVEENLIA-PVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVGDDS 194
Query: 244 WQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIG 291
W+F + V I G+TT G AI D+ +++ GP + IN AIG
Sbjct: 195 WKFRLDGVKI-GDTT-VAPAGTQAIIDTSKAIIVGPKAYVNPINEAIG 240
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 407 VDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRG--PLWI 464
+DC + S+P+V+F I G+ F+++ Y+ + G C SGF P G +
Sbjct: 254 LDCSKIPSLPDVTFVINGRNFNISSQYYIQQNGN----LCYSGFQ------PXGHSDHFF 303
Query: 465 LGDVFMGRYHTVFDYGNLSIGFAEA 489
+GD F+ Y++ F++ N ++GF +
Sbjct: 304 IGDFFVDHYYSEFNWENKTMGFGRS 328
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 98/233 (42%), Gaps = 19/233 (8%)
Query: 74 MRTPVRRYNLH---GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTG 130
+ TP + NL GSS+LWV S++ S T +
Sbjct: 23 IGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLLSGATWSISYGDGS 82
Query: 131 AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLA-AKFDGILGLGFQEISIGKAI--P 187
+ SG D V VG L V Q +E+ K+ S +F + DG+LGL F ++
Sbjct: 83 SSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQK 141
Query: 188 VWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPV-TKKGYWQF 246
+++ L PVF+ D D Y G TY V TK+G+W++
Sbjct: 142 TFFDNAKASL-DSPVFT----ADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEW 196
Query: 247 EMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIIT----QINHAIGASGV 295
+ T + ST + IAD+GT+LL P T+++ Q++ A +S V
Sbjct: 197 TSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSSSSV 247
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 97/234 (41%), Gaps = 21/234 (8%)
Query: 74 MRTPVRRYNLH---GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTG 130
+ TP + NL GSS+LWV S++ S T +
Sbjct: 23 IGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLLSGATWSISYGDGS 82
Query: 131 AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLA-AKFDGILGLGFQEISIGKAIPVW 189
+ SG D V VG L V Q +E+ K+ S +F + DG+LGL F ++ P
Sbjct: 83 SSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAFSTLN--TVSPTQ 139
Query: 190 YNML---DQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPV-TKKGYWQ 245
+ + PVF+ D D Y G TY V TK+G+W+
Sbjct: 140 QKTFFDNAKASLDSPVFT----ADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWE 195
Query: 246 FEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIIT----QINHAIGASGV 295
+ + T + ST + IAD+GT+LL P T+++ Q++ A +S V
Sbjct: 196 WTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSSSSV 247
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 85 GSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKV 143
GSSNLWVPS C + +NGTS I YG+G++SG+ SQD V V
Sbjct: 35 GSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSV 94
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 27/179 (15%)
Query: 124 AIQYGTGAIS-GFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 182
+I+YG S G F +D V G + +KNQ F + T + GI+G+GF
Sbjct: 81 SIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTT-------TSVDQGIMGIGFTADEA 133
Query: 183 GKAIPVWYNMLD--------QGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHT 234
G YN+ D QG++ + +S +LN + D Y G T
Sbjct: 134 G------YNLYDNVPVTLKKQGIINKNAYSLYLNSE--DASTGKIIFGGVDNAKYTGTLT 185
Query: 235 YVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 293
+PVT + +G + DG + ST + + DSGT++ + + +GA+
Sbjct: 186 ALPVTSSVELRVHLGSINFDGTS---VSTNADVVLDSGTTITYFSQSTADKFARIVGAT 241
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 18/166 (10%)
Query: 139 DNVKVGDLVVKNQDFIEATKEASITFLA-AKFDGILGLGFQEISIGKAIPVWYNML---D 194
D V VG L V Q +E+ K+ S +F + DG+LGL F ++ P
Sbjct: 92 DTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAFSTLN--TVSPTQXKTFFDNA 148
Query: 195 QGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPV-TKKGYWQFEMGDVLI 253
+ + PVF+ D D Y G TY V TK+G+W++ +
Sbjct: 149 KASLDSPVFT----ADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAV 204
Query: 254 DGETTGYCSTGCNAIADSGTSLLAGPTTIIT----QINHAIGASGV 295
T + ST + IAD+GT+LL P T+++ Q++ A +S V
Sbjct: 205 GSGT--FKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSSSSV 248
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 16/165 (9%)
Query: 139 DNVKVGDLVVKNQDFIEATKEASITFLA-AKFDGILGLGFQEISIGKAI--PVWYNMLDQ 195
D V VG L V Q +E+ K+ S +F + DG+LGL F ++ +++
Sbjct: 92 DTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKA 150
Query: 196 GLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPV-TKKGYWQFEMGDVLID 254
L PVF+ D D Y G TY V TK+G+W++ +
Sbjct: 151 SL-DSPVFT----ADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVG 205
Query: 255 GETTGYCSTGCNAIADSGTSLLAGPTTIIT----QINHAIGASGV 295
T + ST + IAD+GT+LL P T+++ Q++ A +S V
Sbjct: 206 SGT--FKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSSSSV 248
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 29/192 (15%)
Query: 125 IQYGTGAIS-GFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIG 183
I+YG G+ + G +D V +G + V++Q F A++ +A+ GILG+GFQ G
Sbjct: 82 IKYGDGSYAKGKLYKDTVGIGGVSVRDQLF------ANVWSTSAR-KGILGIGFQS---G 131
Query: 184 KAIPVWYNML-----DQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPV 238
+A Y+ L +QG++ + +S +LN D Y G +P+
Sbjct: 132 EATEFDYDNLPISLRNQGIIGKAAYSLYLN--SAEASTGQIIFGGIDKAKYSGSLVDLPI 189
Query: 239 TKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGA------ 292
T + + V + G N + DSGT++ +I+ I +AIGA
Sbjct: 190 TSEKKLTVGLRSVNVRGRN---VDANTNVLLDSGTTISYFTRSIVRNILYAIGAQMKFDS 246
Query: 293 --SGVISQECKT 302
+ V +CKT
Sbjct: 247 AGNKVYVADCKT 258
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 79/216 (36%), Gaps = 36/216 (16%)
Query: 76 TPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAI 132
+P Y+L GSSN W+ + K Y ++ YG+G+
Sbjct: 22 SPATTYSLLVDTGSSNTWLGADKSYVKTSTSSATSDK-------------VSVTYGSGSF 68
Query: 133 SGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIP----- 187
SG D V +G L + Q A++++ DGILG+G ++++G P
Sbjct: 69 SGTEYTDTVTLGSLTIPKQSIGVASRDSGF----DGVDGILGVGPVDLTVGTLSPHTSTS 124
Query: 188 ---VWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXX-XXXDPDHYKGEHTYVPVTK--- 240
V N+ QG + + + D Y G TY P+T
Sbjct: 125 IPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSP 184
Query: 241 -KGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSL 275
YW + G +T S+ I D+GT+L
Sbjct: 185 ASAYWGINQS--IRYGSSTSILSS-TAGIVDTGTTL 217
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 93/250 (37%), Gaps = 23/250 (9%)
Query: 73 TMRTPVRRYNL---HGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGT 129
++ TP + + L GSS+ WVP C S + I YGT
Sbjct: 25 SIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGT 84
Query: 130 GAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAK-----FDGILGLGFQEISIGK 184
G +G + +D++ VG VK Q + T + DGI G + + + +
Sbjct: 85 GGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAME 144
Query: 185 A------IPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPV 238
A V N+ QGL+ PVFS ++N + G+ Y V
Sbjct: 145 AEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDGGGQVVFGGVNNT---LLGGDIQYTDV 201
Query: 239 TKK--GY--WQFEMGDVLIDGETTGYCSTGCNAIA-DSGTSLLAGPTTIITQINHAIGAS 293
K GY W + V IDG + G A D+GT+ P++ ++ A
Sbjct: 202 LKSRGGYFFWDAPVTGVKIDG-SDAVSFDGAQAFTIDTGTNFFIAPSSFAEKVVKAALPD 260
Query: 294 GVISQECKTL 303
SQ+ T+
Sbjct: 261 ATESQQGYTV 270
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 453 FDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 490
F V P G +I+G++F+ + V+D+G IGFA A
Sbjct: 318 FIVLPDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLA 355
>pdb|2QYP|A Chain A, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
pdb|2QYP|B Chain B, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
Length = 91
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 296 ISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTR 337
+S+EC+ +VD YG +IL +L+ E P+ +CS + LC+ GTR
Sbjct: 46 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS--GTR 85
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 364 CSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGE 404
C CE V + + N+T +IL+ +++C +LP E
Sbjct: 8 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 48
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 11/137 (8%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVG 144
GSS+ WVP C S + I YGTG +G + +D++ +G
Sbjct: 40 GSSDTWVPHKGCTKSEGCVGSRFFDPSASSTFKATNYNLNITYGTGGANGLYFEDSIAIG 99
Query: 145 DLVVKNQ-----DFIEATKEASITFLAAKFDGILGLGFQEISIGKA------IPVWYNML 193
D+ V Q D + DG+ G + + + +A V N+
Sbjct: 100 DITVTKQILAYVDNVRGPTAEQSPNADIFLDGLFGAAYPDNTAMEAEYGSTYNTVHVNLY 159
Query: 194 DQGLVKEPVFSFWLNRD 210
QGL+ P+FS ++N +
Sbjct: 160 KQGLISSPLFSVYMNTN 176
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 453 FDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 490
F + P G +I+G++F+ + V+D+GN IGFA A
Sbjct: 318 FIILPDGGNQYIVGNLFLRFFVNVYDFGNNRIGFAPLA 355
>pdb|1M12|A Chain A, Nmr Solution Structure Of Human Saposin C
pdb|1SN6|A Chain A, Nmr Solution Structure Of Human Saposin C In Sds Micelles
Length = 84
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 296 ISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCT 332
+S+EC+ +VD YG +IL +L+ E P+ +CS + LC+
Sbjct: 43 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 79
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 364 CSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGE 404
C CE V + + N+T +IL+ +++C +LP E
Sbjct: 5 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 45
>pdb|2Z9A|A Chain A, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
pdb|2Z9A|B Chain B, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
Length = 88
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 296 ISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCT 332
+S+EC+ +VD YG +IL +L+ E P+ +CS + LC+
Sbjct: 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 81
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 364 CSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGE 404
C CE V + + N+T +IL+ +++C +LP E
Sbjct: 7 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 47
>pdb|2GTG|A Chain A, Crystal Structure Of Human Saposin C
Length = 83
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 296 ISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCT 332
+S+EC+ +VD YG +IL +L+ E P+ +CS + LC+
Sbjct: 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 81
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 364 CSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGE 404
C CE V + + N+T +IL+ +++C +LP E
Sbjct: 7 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 47
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 25/203 (12%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA--------IQYGTGAIS-GF 135
GSS+LWVP V +G+SA+ I YG G+ S G
Sbjct: 34 GSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYGDGSSSQGT 93
Query: 136 FSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKA---IPVWYNM 192
+D V G + +KNQ + SI GILG+G++ G + +PV +
Sbjct: 94 LYKDTVGFGGVSIKNQ-VLADVDSTSID------QGILGVGYKTNEAGGSYDNVPV--TL 144
Query: 193 LDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVL 252
QG++ + +S +LN D Y G +PVT + +G V
Sbjct: 145 KKQGVIAKNAYSLYLNS--PDAATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVE 202
Query: 253 IDGETTGYCSTGCNAIADSGTSL 275
+ G+T + + + DSGT++
Sbjct: 203 VSGKTIN--TDNVDVLLDSGTTI 223
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 25/203 (12%)
Query: 85 GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA--------IQYGTGAIS-GF 135
GSS+LWVP V +G+SA+ I YG G+ S G
Sbjct: 34 GSSDLWVPDVNIDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFSIGYGDGSSSQGT 93
Query: 136 FSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKA---IPVWYNM 192
+D V G + +KNQ + SI GILG+G++ G + +PV +
Sbjct: 94 LYKDTVGFGGVSIKNQ-VLADVDSTSID------QGILGVGYKTNEAGGSYDNVPV--TL 144
Query: 193 LDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVL 252
QG++ + +S +LN D Y G +PVT + +G V
Sbjct: 145 KKQGVIAKNAYSLYLNS--PDSATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVE 202
Query: 253 IDGETTGYCSTGCNAIADSGTSL 275
+ G+T + + + DSGT++
Sbjct: 203 VSGKTIN--TDNVDVLLDSGTTI 223
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound
To Penicillopepsin: Phosphorus-Containing Peptide
Analogues
pdb|1PPM|E Chain E, Crystallographic Analysis Of Transition-state Mimics Bound
To Penicillopepsin: Phosphorus-containing Peptide
Analogues
pdb|1APT|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APU|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APV|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1APW|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1PPK|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Phosphorous-Containing Peptide
Analogues
pdb|1BXO|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl
Cyclo[(2s)-2-[[(1r)-1-(N-(L-N-(3-
Methylbutanoyl)valyl-L-Aspartyl)amino)-3-Methylbut Yl]
Hydroxyphosphinyloxy]-3-(3-Aminomethyl) Phenylpropanoate
pdb|1BXQ|A Chain A, Acid Proteinase (Penicillopepsin) Complex With Phosphonate
Inhibitor.
pdb|2WEA|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl[cyclo-7[(2r)-((N-Valyl)
Amino)-2-(Hydroxyl-(1s)-1-Methyoxycarbonyl-2-
Phenylethoxy)
Phosphinyloxy-Ethyl]-1-Naphthaleneacetamide], Sodium
Salt
pdb|2WEB|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl(2s)-[1-(((n-formyl)-l-
Valyl)amino-2-(2-naphthyl)ethyl)hydroxyphosphinyloxy]-3-
Phenylpropanoate, Sodium Salt
pdb|2WEC|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-
Naphthaleneacetyl))-L-Valyl)aminomethyl)hydroxy
Phosphinyloxy]-3-Phenylpropanoate, Sodium Salt
pdb|2WED|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Macrocyclic
Inhibitor:methyl[cyclo-7[(2r)-
((n-valyl)amino)-2-(hydroxyl-(1s)-1-methyoxycarbonyl-2-
Phenylethoxy)phosphinyloxy-ethyl]-1-
naphthaleneacetamide], Sodium Salt
pdb|3APP|A Chain A, Structure And Refinement Of Penicillopepsin At 1.8
Angstroms Resolution
Length = 323
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 24/232 (10%)
Query: 66 TVSKEEETMRTPVR----RYNLH---GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXR 118
T + +E TPV NL+ GS++LWV S +
Sbjct: 9 TPTANDEEYITPVTIGGTTLNLNFDTGSADLWVFSTE--LPASQQSGHSVYNPSATGKEL 66
Query: 119 NGTSAAIQYGTGA-ISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLA-AKFDGILGLG 176
+G + +I YG G+ SG D+V VG + Q ++A ++ S F DG+LGL
Sbjct: 67 SGYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQA-VQAAQQISAQFQQDTNNDGLLGLA 125
Query: 177 FQEISI--GKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHT 234
F I+ ++ +++ + L +P+F+ L D Y G T
Sbjct: 126 FSSINTVQPQSQTTFFDTVKSSLA-QPLFAVALKHQQPGVYDFGFI----DSSKYTGSLT 180
Query: 235 YVPV-TKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQ 285
Y V +G+W F + D G +G G + IAD+GT+LL ++++Q
Sbjct: 181 YTGVDNSQGFWSFNV-DSYTAGSQSG---DGFSGIADTGTTLLLLDDSVVSQ 228
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 92/223 (41%), Gaps = 22/223 (9%)
Query: 66 TVSKEEETMRTPVR--RYNLH-----GSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXR 118
T +E TPV + LH GS++LWV S + S
Sbjct: 8 TPQNNDEEYLTPVTVGKSTLHLDFDTGSADLWVFSDELPSS--EQTGHDLYTPSSSATKL 65
Query: 119 NGTSAAIQYGTGA-ISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLA-AKFDGILGLG 176
+G S I YG G+ SG +D V VG V N+ +EA + S F+ DG+LGL
Sbjct: 66 SGYSWDISYGDGSSASGDVYRDTVTVGG-VTTNKQAVEAASKISSEFVQDTANDGLLGLA 124
Query: 177 FQEISI--GKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHT 234
F I+ KA +++ + L P+F+ L D D Y G T
Sbjct: 125 FSSINTVQPKAQTTFFDTVKSQL-DSPLFAVQLKHD----APGVYDFGYIDDSKYTGSIT 179
Query: 235 YVPV-TKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLL 276
Y + +GYW F I S+G +AIAD+GT+L+
Sbjct: 180 YTDADSSQGYWGFSTDGYSI--GDGSSSSSGFSAIADTGTTLI 220
>pdb|1IZD|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase
pdb|1IZE|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase Complexed With Pepstatin
Length = 323
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 12/162 (7%)
Query: 119 NGTSAAIQYGTGA-ISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGF 177
+G + +I YG G+ SG +D V VG + +Q A K +S DG+LGL F
Sbjct: 67 DGATWSISYGDGSSASGDVYKDKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAF 126
Query: 178 QEISIGKAIP--VWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTY 235
I+ + P +++ + L EP+F+ L + D Y G TY
Sbjct: 127 SSINTVQPTPQKTFFDNVKSSL-SEPIFAVALKHN----APGVYDFGYTDSSKYTGSITY 181
Query: 236 VPV-TKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLL 276
V +G+W F I +++ TG IAD+GT+LL
Sbjct: 182 TDVDNSQGFWGFTADGYSIGSDSSSDSITG---IADTGTTLL 220
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 413 SSMPNVSFTIGGKVFDLAPNEYV--LEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFM 470
+S+P+ S TIG + P EY+ +VG G I + + I GDVF+
Sbjct: 252 ASLPDFSVTIGDYTATV-PGEYISFADVGNGQTFGGIQSNSGIGFS-------IFGDVFL 303
Query: 471 GRYHTVFDYGNLSIGFAEAA 490
+ VFD +GFA A
Sbjct: 304 KSQYVVFDASGPRLGFAAQA 323
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 15/192 (7%)
Query: 120 GTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDF---IEATKEASITFLAA-KFDGILGL 175
G ++Y G+ +GF +D V + N F I E+ FL K++GILGL
Sbjct: 65 GFDVTVKYTQGSWTGFVGEDLVTIPKGF--NTSFLVNIATIFESENFFLPGIKWNGILGL 122
Query: 176 GFQEIS-IGKAIPVWYNMLDQGLVKEPVFSFW-----LNRDXXXXXXXXXXXXXXDPDHY 229
+ ++ ++ +++ L VFS L +P Y
Sbjct: 123 AYATLAKPSSSLETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLY 182
Query: 230 KGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQI 286
KG+ Y P+ ++ Y+Q E+ + I G++ N AI DSGT+LL P + +
Sbjct: 183 KGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAV 242
Query: 287 NHAIGASGVISQ 298
A+ + +I +
Sbjct: 243 VEAVARASLIPE 254
>pdb|2DOB|A Chain A, Crystal Structure Of Human Saposin A
Length = 83
Score = 36.2 bits (82), Expect = 0.040, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 364 CSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESA 406
C C+ V + L+ N T ++IL Y+ + CD LP PN ++
Sbjct: 6 CDICKDVVTAAGDXLKDNATEEEILVYLEKTCDWLPKPNXSAS 48
Score = 33.1 bits (74), Expect = 0.35, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 297 SQECKTLVDQYGKTILEMLIAE-TQPQKICSQMGLC 331
S CK +VD Y IL+++ E ++P ++CS + LC
Sbjct: 46 SASCKEIVDSYLPVILDIIKGEXSRPGEVCSALNLC 81
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 79/200 (39%), Gaps = 21/200 (10%)
Query: 85 GSSNLWVPSAKCYFSVXXXX------XXXXXXXXXXXXXRNGTSA-AIQYGTGAIS-GFF 136
GSS+LWVP ++ +N S +I+YG G S G +
Sbjct: 34 GSSDLWVPDSQVSCQAGQGQDPNFCKNEGTYSPSSSSSSQNLNSPFSIEYGDGTTSQGTW 93
Query: 137 SQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQ-EISIGKAIPVWYNMLDQ 195
+D + G + + Q F + T + GILG+G++ + G V + +Q
Sbjct: 94 YKDTIGFGGISITKQQFADVTS-------TSVDQGILGIGYKTHEAEGNYDNVPVTLKNQ 146
Query: 196 GLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDG 255
G++ + +S +LN D Y G +PVT + + V + G
Sbjct: 147 GIISKNAYSLYLNS--RQATSGQIIFGGVDNAKYSGTLIALPVTSDNELRIHLNTVKVAG 204
Query: 256 ETTGYCSTGCNAIADSGTSL 275
++ + + + DSGT++
Sbjct: 205 QS---INADVDVLLDSGTTI 221
>pdb|4DDJ|A Chain A, Crystal Structure Of Saposin A In Complex With
Lauryldimethylamine-N- Oxide (Ldao)
Length = 83
Score = 35.8 bits (81), Expect = 0.054, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 364 CSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPN 402
C C+ V + L+ N T ++IL Y+ + CD LP PN
Sbjct: 6 CDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPN 44
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 296 ISQECKTLVDQYGKTILEMLIAE-TQPQKICSQMGLC 331
+S CK +VD Y IL+++ E ++P ++CS + LC
Sbjct: 45 MSASCKEIVDSYLPVILDIIKGEMSRPGEVCSALNLC 81
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 10/141 (7%)
Query: 139 DNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIP--VWYNMLDQG 196
D V +G V Q AT+ ++ G++GL F + + P W++
Sbjct: 92 DKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAFDSGNQVRPHPQKTWFSNAASS 151
Query: 197 LVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPV-TKKGYWQFEMGDVLIDG 255
L EP+F+ D D KG Y PV +G+W+F + G
Sbjct: 152 LA-EPLFT----ADLRHGQNGSYNFGYIDTSVAKGPVAYTPVDNSQGFWEFTASGYSVGG 206
Query: 256 ETTGYCSTGCNAIADSGTSLL 276
S + IAD+GT+LL
Sbjct: 207 GKLNRNS--IDGIADTGTTLL 225
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 85/216 (39%), Gaps = 25/216 (11%)
Query: 73 TMRTPVRRYNL---HGSSNLWVPSAKCYF-------SVXXXXXXXXXXXXXXXXXRN-GT 121
T+ + +++N+ GSS+LWVP A S +N GT
Sbjct: 19 TIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQSADFCKGKGIYTPKSSTTSQNLGT 78
Query: 122 SAAIQYGTGAIS-GFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQ-E 179
I YG G+ S G +D V G + Q F + TK SI GILG+G++
Sbjct: 79 PFYIGYGDGSSSQGTLYKDTVGFGGASITKQVFADITK-TSIP------QGILGIGYKTN 131
Query: 180 ISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVT 239
+ G V + +QG++ + +S +LN D Y G VPVT
Sbjct: 132 EAAGDYDNVPVTLKNQGVIAKNAYSLYLNS--PNAATGQIIFGGVDKAKYSGSLIAVPVT 189
Query: 240 KKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSL 275
+ + + G+ + + + DSGT++
Sbjct: 190 SDRELRITLNSLKAVGKN---INGNIDVLLDSGTTI 222
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 406 AVDCDNLSSMPNVSFTIGGKVFD--------LAPNEYV----LEVGEGVAAQCISGFTAF 453
+VD L NVS +G K LA N V LE G V AQ I G +A
Sbjct: 155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214
Query: 454 DVAPPRGPLWILGDVFMGRYHTVFD 478
D+A R +W++ + R +D
Sbjct: 215 DLAKQRKNVWMINHLQEARQAKGYD 239
>pdb|1N69|A Chain A, Crystal Structure Of Human Saposin B
pdb|1N69|B Chain B, Crystal Structure Of Human Saposin B
pdb|1N69|C Chain C, Crystal Structure Of Human Saposin B
Length = 81
Score = 32.3 bits (72), Expect = 0.68, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 300 CKTLVDQYGKTILEMLIAETQPQKICSQMGLC 331
CK + QY + ++M++ QP++IC+ +G C
Sbjct: 49 CKNYISQYSEIAIQMMM-HMQPKEICALVGFC 79
>pdb|2R0R|A Chain A, Crystal Structure Of Human Saposin D Variant Sapd K9e
pdb|2R0R|B Chain B, Crystal Structure Of Human Saposin D Variant Sapd K9e
Length = 85
Score = 32.0 bits (71), Expect = 0.70, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 362 AMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSP 401
C CE V ++ L +N T +IL + + C LP P
Sbjct: 2 GFCEVCEKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP 41
>pdb|2RB3|A Chain A, Crystal Structure Of Human Saposin D
pdb|2RB3|B Chain B, Crystal Structure Of Human Saposin D
pdb|2RB3|C Chain C, Crystal Structure Of Human Saposin D
pdb|2RB3|D Chain D, Crystal Structure Of Human Saposin D
Length = 85
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 362 AMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSP 401
C C+ V ++ L +N T +IL + + C LP P
Sbjct: 2 GFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP 41
>pdb|2R1Q|A Chain A, Crystal Structure Of Iodinated Human Saposin D In Space
Group C2221
Length = 85
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 362 AMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSP 401
C C+ V ++ L +N T +IL + + C LP P
Sbjct: 2 GFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP 41
>pdb|3BQP|A Chain A, Crystal Structure Of Human Saposin D (Orthorhombic)
pdb|3BQP|B Chain B, Crystal Structure Of Human Saposin D (Orthorhombic)
pdb|3BQQ|C Chain C, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|A Chain A, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|B Chain B, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|D Chain D, Crystal Structure Of Human Saposin D (Triclinic)
Length = 80
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 362 AMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSP 401
C C+ V ++ L +N T +IL + + C LP P
Sbjct: 3 GFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP 42
>pdb|3GN4|A Chain A, Myosin Lever Arm
pdb|3GN4|E Chain E, Myosin Lever Arm
Length = 148
Score = 29.3 bits (64), Expect = 4.7, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 44 DGLVRIGLRKKKLDQINRLVGQTVSKEEE 72
DGLV++G KK+LD+ N +V ++E
Sbjct: 69 DGLVKVGTLKKRLDKFNEVVSALKDGKQE 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,263,608
Number of Sequences: 62578
Number of extensions: 505701
Number of successful extensions: 1360
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1043
Number of HSP's gapped (non-prelim): 156
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)