Query 011243
Match_columns 490
No_of_seqs 169 out of 1734
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 23:11:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05486 Cathespin_E Cathepsin 100.0 1.3E-56 2.8E-61 455.6 34.1 309 72-488 5-316 (316)
2 cd05490 Cathepsin_D2 Cathepsin 100.0 5.7E-56 1.2E-60 452.5 35.5 311 72-488 11-325 (325)
3 PTZ00165 aspartyl protease; Pr 100.0 9.2E-56 2E-60 469.8 37.1 303 72-490 125-447 (482)
4 cd05487 renin_like Renin stimu 100.0 2.7E-55 6E-60 447.8 37.0 310 72-489 13-326 (326)
5 cd06098 phytepsin Phytepsin, a 100.0 4.9E-55 1.1E-59 444.3 32.9 300 72-488 15-317 (317)
6 cd05477 gastricsin Gastricsins 100.0 1.3E-54 2.8E-59 441.2 35.9 307 72-489 8-318 (318)
7 cd05485 Cathepsin_D_like Cathe 100.0 4.1E-54 8.8E-59 439.8 35.6 310 72-488 16-329 (329)
8 cd05478 pepsin_A Pepsin A, asp 100.0 5.2E-54 1.1E-58 436.7 34.6 300 72-488 15-317 (317)
9 cd05488 Proteinase_A_fungi Fun 100.0 2.1E-53 4.5E-58 432.9 34.9 303 72-488 15-320 (320)
10 PTZ00147 plasmepsin-1; Provisi 100.0 9E-52 1.9E-56 436.2 36.3 302 72-490 144-450 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 2.5E-51 5.4E-56 432.1 35.5 302 72-490 143-449 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 1.4E-51 3.1E-56 416.4 28.2 308 72-489 6-317 (317)
13 cd06097 Aspergillopepsin_like 100.0 5.1E-47 1.1E-51 378.4 29.1 214 72-293 5-227 (278)
14 cd05473 beta_secretase_like Be 100.0 1.2E-45 2.6E-50 382.4 29.9 308 72-490 8-346 (364)
15 cd05474 SAP_like SAPs, pepsin- 100.0 3.4E-45 7.4E-50 367.4 30.4 270 72-489 7-295 (295)
16 cd06096 Plasmepsin_5 Plasmepsi 100.0 4.9E-44 1.1E-48 365.0 27.8 273 72-489 8-323 (326)
17 KOG1339 Aspartyl protease [Pos 100.0 3.5E-43 7.5E-48 368.0 30.9 301 72-489 51-392 (398)
18 PLN03146 aspartyl protease fam 100.0 1.2E-42 2.7E-47 366.6 31.8 293 72-489 89-426 (431)
19 cd05471 pepsin_like Pepsin-lik 100.0 3.5E-42 7.6E-47 341.9 32.7 220 72-293 5-231 (283)
20 cd05472 cnd41_like Chloroplast 100.0 6.4E-43 1.4E-47 352.3 27.3 279 72-489 6-297 (299)
21 cd05476 pepsin_A_like_plant Ch 100.0 8.8E-40 1.9E-44 324.1 25.9 240 72-490 6-264 (265)
22 cd05475 nucellin_like Nucellin 100.0 2.2E-39 4.8E-44 322.7 26.1 249 72-490 7-272 (273)
23 cd05489 xylanase_inhibitor_I_l 100.0 6.4E-37 1.4E-41 316.4 25.9 310 74-489 2-361 (362)
24 cd05470 pepsin_retropepsin_lik 99.8 9.9E-19 2.1E-23 149.7 11.8 103 72-175 3-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.7 1.8E-16 4E-21 146.2 13.8 129 72-223 5-164 (164)
26 PF14541 TAXi_C: Xylanase inhi 99.7 2.5E-16 5.5E-21 144.7 12.8 153 243-488 1-161 (161)
27 PF03489 SapB_2: Saposin-like 98.1 2.8E-06 6E-11 57.5 2.6 35 297-331 1-35 (35)
28 PF05184 SapB_1: Saposin-like 97.6 4.6E-05 1E-09 52.7 3.2 38 362-399 2-39 (39)
29 KOG1340 Prosaposin [Lipid tran 97.0 0.0018 4E-08 62.0 7.5 121 268-412 52-175 (218)
30 cd05483 retropepsin_like_bacte 95.1 0.036 7.8E-07 45.2 4.7 83 72-176 7-93 (96)
31 smart00741 SapB Saposin (B) Do 94.5 0.052 1.1E-06 42.2 4.1 49 281-331 28-76 (76)
32 cd05479 RP_DDI RP_DDI; retrope 92.2 0.85 1.8E-05 39.8 8.3 26 460-485 98-123 (124)
33 smart00741 SapB Saposin (B) Do 91.3 0.2 4.3E-06 38.9 3.0 37 363-399 2-38 (76)
34 PF08284 RVP_2: Retroviral asp 89.2 0.83 1.8E-05 40.7 5.5 28 461-488 104-131 (135)
35 KOG1340 Prosaposin [Lipid tran 87.9 0.32 7E-06 46.8 2.1 46 288-333 160-205 (218)
36 PF11925 DUF3443: Protein of u 86.7 5.1 0.00011 41.4 10.0 146 125-281 82-272 (370)
37 PF13650 Asp_protease_2: Aspar 84.2 5.8 0.00013 31.5 7.6 43 127-176 46-89 (90)
38 TIGR03698 clan_AA_DTGF clan AA 80.0 9.2 0.0002 32.5 7.5 24 461-484 84-107 (107)
39 TIGR02281 clan_AA_DTGA clan AA 77.4 5.9 0.00013 34.5 5.7 86 72-177 16-103 (121)
40 PF09668 Asp_protease: Asparty 75.2 15 0.00033 32.2 7.6 30 250-286 28-57 (124)
41 PF13650 Asp_protease_2: Aspar 74.9 3.8 8.2E-05 32.6 3.6 29 251-286 3-31 (90)
42 PF13975 gag-asp_proteas: gag- 72.2 5.9 0.00013 31.0 4.0 30 250-286 12-41 (72)
43 cd05484 retropepsin_like_LTR_2 66.8 7.4 0.00016 31.6 3.6 30 250-286 4-33 (91)
44 TIGR02281 clan_AA_DTGA clan AA 65.3 7.8 0.00017 33.7 3.7 30 250-286 15-44 (121)
45 cd05483 retropepsin_like_bacte 62.9 10 0.00022 30.4 3.8 30 250-286 6-35 (96)
46 cd06095 RP_RTVL_H_like Retrope 58.5 11 0.00024 30.5 3.1 29 251-286 3-31 (86)
47 cd05481 retropepsin_like_LTR_1 42.7 24 0.00051 29.2 2.8 23 265-287 11-33 (93)
48 cd05479 RP_DDI RP_DDI; retrope 41.7 98 0.0021 26.7 6.7 82 72-176 21-106 (124)
49 PF00077 RVP: Retroviral aspar 41.5 20 0.00044 29.3 2.2 27 250-283 9-35 (100)
50 PF02160 Peptidase_A3: Caulifl 40.1 85 0.0018 29.9 6.4 49 415-486 67-115 (201)
51 PF07172 GRP: Glycine rich pro 37.4 26 0.00056 29.3 2.2 8 17-24 1-8 (95)
52 COG5550 Predicted aspartyl pro 33.7 26 0.00055 30.7 1.6 23 266-288 28-51 (125)
53 COG3577 Predicted aspartyl pro 29.6 84 0.0018 30.1 4.4 52 119-177 145-197 (215)
54 COG3577 Predicted aspartyl pro 27.3 75 0.0016 30.4 3.7 30 250-286 109-138 (215)
55 PRK02710 plastocyanin; Provisi 24.9 2.1E+02 0.0045 24.6 5.9 15 78-92 46-61 (119)
56 KOG0012 DNA damage inducible p 20.1 2.4E+02 0.0052 29.3 5.9 37 446-487 308-344 (380)
No 1
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.3e-56 Score=455.60 Aligned_cols=309 Identities=45% Similarity=0.876 Sum_probs=273.1
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCCCCcccCCCCCceeeCCeEEEEEecCceEEEEEEEEEEEeCCeEe
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVGDLVV 148 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~dGs~~G~~~~Dtv~igg~~v 148 (490)
|+||||||++.| |||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.+++|+|++|+.++
T Consensus 5 i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig~~~~ 83 (316)
T cd05486 5 ISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVEGITV 83 (316)
T ss_pred EEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEECCEEE
Confidence 899999999999 99999999999997 56799899999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEEeeccccccccccceEEecccCccccCCCCchhhhhhhcCCCCCCeEEEEecCCCCCCCCcEEEECCCCCCC
Q 011243 149 KNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGVDPDH 228 (490)
Q Consensus 149 ~~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~~~FSl~L~~~~~~~~~G~L~fGGiD~~~ 228 (490)
+++.||++....+..+.....+||||||++..+.....+++++|++||+|++++||+||++.++....|.|+|||+|+++
T Consensus 84 ~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~ 163 (316)
T cd05486 84 QNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSR 163 (316)
T ss_pred cCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHH
Confidence 99999998776554455567899999999887766778899999999999999999999975434458999999999999
Q ss_pred cccceEEEeccccceeEEEEceEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCcccchhhhHHHHhhh
Q 011243 229 YKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYG 308 (490)
Q Consensus 229 ~~G~l~~~p~~~~~~w~V~l~~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 308 (490)
+.|++.|+|+...++|.|.+++|+|+++.+. ......++|||||+++++|+++++++.+.+++.
T Consensus 164 ~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~--------------- 227 (316)
T cd05486 164 FSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGAT--------------- 227 (316)
T ss_pred cccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCc---------------
Confidence 9999999999999999999999999998764 234578999999999999999999998887544
Q ss_pred HHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCCCCCCCcccchhHHHHHHHHHHhhcchhhHHHH
Q 011243 309 KTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQIL 388 (490)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (490)
T Consensus 228 -------------------------------------------------------------------------------- 227 (316)
T cd05486 228 -------------------------------------------------------------------------------- 227 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEeecccccceeeeeeEecccCCCCCCeeeecHh
Q 011243 389 NYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDV 468 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~c~~~~~~p~l~f~f~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~ 468 (490)
...+.|.++|+....+|+|+|+|+|+.++|+|++|+......+...|++.|.+.+..+..++.||||++
T Consensus 228 -----------~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~ 296 (316)
T cd05486 228 -----------ATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDV 296 (316)
T ss_pred -----------ccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchH
Confidence 123568899998788999999999999999999999875333456899999877654445678999999
Q ss_pred hhcceeEEEeCCCCeEEEEE
Q 011243 469 FMGRYHTVFDYGNLSIGFAE 488 (490)
Q Consensus 469 fl~~~y~vfD~~~~~igfa~ 488 (490)
|||++|+|||.+++|||||+
T Consensus 297 flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 297 FIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred HhcceEEEEeCCCCEeeccC
Confidence 99999999999999999996
No 2
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=5.7e-56 Score=452.47 Aligned_cols=311 Identities=49% Similarity=0.941 Sum_probs=272.6
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCc-ccccCCCCcccCCCCCceeeCCeEEEEEecCceEEEEEEEEEEEeCCeE
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYF-SVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVGDLV 147 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~-~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~dGs~~G~~~~Dtv~igg~~ 147 (490)
|+||||||++.| |||+++||++..|.. ...|..++.|+|++|+|++..++.+.+.|++|++.|.+++|+|++|+.+
T Consensus 11 i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~~D~v~~g~~~ 90 (325)
T cd05490 11 IGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLSQDTVSIGGLQ 90 (325)
T ss_pred EEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEeeeEEEECCEE
Confidence 899999999999 999999999999963 2468888999999999999999999999999999999999999999999
Q ss_pred eeeeEEEEEEeeccccccccccceEEecccCccccCCCCchhhhhhhcCCCCCCeEEEEecCCCCCCCCcEEEECCCCCC
Q 011243 148 VKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGVDPD 227 (490)
Q Consensus 148 v~~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~~~FSl~L~~~~~~~~~G~L~fGGiD~~ 227 (490)
++++.||+++...+..+.....+||||||++..+....++++++|++||.|.+++||+||++..+....|+|+|||+|++
T Consensus 91 ~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~ 170 (325)
T cd05490 91 VEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPK 170 (325)
T ss_pred EcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHH
Confidence 99999999987655434455679999999998777677889999999999999999999987543345799999999999
Q ss_pred CcccceEEEeccccceeEEEEceEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCcccchhhhHHHHhh
Q 011243 228 HYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQY 307 (490)
Q Consensus 228 ~~~G~l~~~p~~~~~~w~V~l~~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 307 (490)
++.|++.|+|+....+|.|.+++|.|++.... ......++|||||+++++|++++++|.+++++.
T Consensus 171 ~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~-------------- 235 (325)
T cd05490 171 YYTGDLHYVNVTRKAYWQIHMDQVDVGSGLTL-CKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV-------------- 235 (325)
T ss_pred HcCCceEEEEcCcceEEEEEeeEEEECCeeee-cCCCCEEEECCCCccccCCHHHHHHHHHHhCCc--------------
Confidence 99999999999988999999999999876432 345678999999999999999999999988544
Q ss_pred hHHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCCCCCCCcccchhHHHHHHHHHHhhcchhhHHH
Q 011243 308 GKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQI 387 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (490)
T Consensus 236 -------------------------------------------------------------------------------- 235 (325)
T cd05490 236 -------------------------------------------------------------------------------- 235 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEeecccccceeeeeeEecccCCCCCCeeeecH
Q 011243 388 LNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGD 467 (490)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~l~f~f~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~ 467 (490)
+...+.|.++|+....+|+|+|+|+|+.++|+|++|+++........|++.|...+.+....+.||||+
T Consensus 236 -----------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd 304 (325)
T cd05490 236 -----------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGD 304 (325)
T ss_pred -----------cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEECh
Confidence 112356889999888899999999999999999999997654445689999987765444567899999
Q ss_pred hhhcceeEEEeCCCCeEEEEE
Q 011243 468 VFMGRYHTVFDYGNLSIGFAE 488 (490)
Q Consensus 468 ~fl~~~y~vfD~~~~~igfa~ 488 (490)
+|||++|+|||++++|||||+
T Consensus 305 ~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 305 VFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred HhheeeEEEEEcCCcEeeccC
Confidence 999999999999999999995
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=9.2e-56 Score=469.76 Aligned_cols=303 Identities=38% Similarity=0.750 Sum_probs=267.9
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCCCCcccCCCCCceee--CCe---EEEEEecCceEEEEEEEEEEEe
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKR--NGT---SAAIQYGTGAISGFFSQDNVKV 143 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~--~~~---~~~~~Y~dGs~~G~~~~Dtv~i 143 (490)
|+||||||+|.| |||+++||++..|. ...|..++.|||++|+|++. .+. .+.+.|++|++.|.+++|+|++
T Consensus 125 I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~i 203 (482)
T PTZ00165 125 IQVGTPPKSFVVVFDTGSSNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKI 203 (482)
T ss_pred EEeCCCCceEEEEEeCCCCCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEE
Confidence 999999999999 99999999999997 66899999999999999998 665 6789999999999999999999
Q ss_pred CCeEeeeeEEEEEEeeccccccccccceEEecccCcc---ccCCCCchhhhhhhcCCCCCCeEEEEecCCCCCCCCcEEE
Q 011243 144 GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEI---SIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIV 220 (490)
Q Consensus 144 gg~~v~~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~---s~~~~~~~~~~L~~qG~I~~~~FSl~L~~~~~~~~~G~L~ 220 (490)
|+.+++++.||++....+..+....+|||||||++.. +.....|++++|++||+|++++||+||.+.. ...|+|+
T Consensus 204 g~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~--~~~G~l~ 281 (482)
T PTZ00165 204 GGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDL--NQPGSIS 281 (482)
T ss_pred CCEEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCC--CCCCEEE
Confidence 9999999999999987655566677899999999876 3345788999999999999999999998643 3479999
Q ss_pred ECCCCCCCc--ccceEEEeccccceeEEEEceEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCcccch
Q 011243 221 FGGVDPDHY--KGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQ 298 (490)
Q Consensus 221 fGGiD~~~~--~G~l~~~p~~~~~~w~V~l~~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~ 298 (490)
|||+|+.++ .|++.|+|+....||.|.+++|+++++.+..+.....|++||||+++++|.++++++.+++++.
T Consensus 282 fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~----- 356 (482)
T PTZ00165 282 FGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE----- 356 (482)
T ss_pred eCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc-----
Confidence 999999776 5789999999999999999999999988765556789999999999999999999999988544
Q ss_pred hhhHHHHhhhHHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCCCCCCCcccchhHHHHHHHHHHh
Q 011243 299 ECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKL 378 (490)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (490)
T Consensus 357 -------------------------------------------------------------------------------- 356 (482)
T PTZ00165 357 -------------------------------------------------------------------------------- 356 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcchhhHHHHHhhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCE-----EEEeCcccceEeec--ccccceeeeeeE
Q 011243 379 RRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGK-----VFDLAPNEYVLEVG--EGVAAQCISGFT 451 (490)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~l~f~f~g~-----~~~i~~~~y~~~~~--~~~~~~C~~~~~ 451 (490)
.+|+....+|+|+|+|+|. +++++|++|+.+.. ......|++++.
T Consensus 357 ----------------------------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~ 408 (482)
T PTZ00165 357 ----------------------------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGII 408 (482)
T ss_pred ----------------------------ccccccccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEE
Confidence 1788777899999999864 89999999999752 334568999999
Q ss_pred ecccCCCCCCeeeecHhhhcceeEEEeCCCCeEEEEEcC
Q 011243 452 AFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 490 (490)
Q Consensus 452 ~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 490 (490)
+.+.+.+.++.||||++|||++|+|||.+|+|||||+++
T Consensus 409 ~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~ 447 (482)
T PTZ00165 409 PMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAK 447 (482)
T ss_pred ECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeec
Confidence 887655567899999999999999999999999999975
No 4
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.7e-55 Score=447.80 Aligned_cols=310 Identities=43% Similarity=0.839 Sum_probs=273.2
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCc-ccccCCCCcccCCCCCceeeCCeEEEEEecCceEEEEEEEEEEEeCCeE
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYF-SVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVGDLV 147 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~-~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~dGs~~G~~~~Dtv~igg~~ 147 (490)
|+||||+|++.| |||+++||++..|.. ...|..++.|+|++|+|++..++.+.+.|++|++.|.+++|+|++|+..
T Consensus 13 i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~~~~D~v~~g~~~ 92 (326)
T cd05487 13 IGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGFLSQDIVTVGGIP 92 (326)
T ss_pred EEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEEEeeeEEEECCEE
Confidence 899999999999 999999999999973 2478889999999999999999999999999999999999999999988
Q ss_pred eeeeEEEEEEeeccccccccccceEEecccCccccCCCCchhhhhhhcCCCCCCeEEEEecCCCCCCCCcEEEECCCCCC
Q 011243 148 VKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGVDPD 227 (490)
Q Consensus 148 v~~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~~~FSl~L~~~~~~~~~G~L~fGGiD~~ 227 (490)
+. +.||++.......+.....+|+||||++..+.....+++++|++||.|++++||+||++.++....|.|+|||+|++
T Consensus 93 ~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~ 171 (326)
T cd05487 93 VT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQ 171 (326)
T ss_pred ee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChh
Confidence 85 78999887643334445679999999987776667889999999999999999999987643455899999999999
Q ss_pred CcccceEEEeccccceeEEEEceEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCcccchhhhHHHHhh
Q 011243 228 HYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQY 307 (490)
Q Consensus 228 ~~~G~l~~~p~~~~~~w~V~l~~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 307 (490)
+|.|++.|+|+....+|.|.+++++++++.+. ...+..++|||||+++++|+++++++.+++++.
T Consensus 172 ~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~-------------- 236 (326)
T cd05487 172 HYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAK-------------- 236 (326)
T ss_pred hccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCc--------------
Confidence 99999999999988999999999999998764 235678999999999999999999999998655
Q ss_pred hHHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCCCCCCCcccchhHHHHHHHHHHhhcchhhHHH
Q 011243 308 GKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQI 387 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (490)
T Consensus 237 -------------------------------------------------------------------------------- 236 (326)
T cd05487 237 -------------------------------------------------------------------------------- 236 (326)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEeecccccceeeeeeEecccCCCCCCeeeecH
Q 011243 388 LNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGD 467 (490)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~l~f~f~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~ 467 (490)
...+.|.+||+...++|.|+|+|++++++|++++|+.+..+.....|++.|...+...+.++.||||+
T Consensus 237 ------------~~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~ 304 (326)
T cd05487 237 ------------ERLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGA 304 (326)
T ss_pred ------------ccCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEeh
Confidence 01356889999888899999999999999999999998765556789999998765444557899999
Q ss_pred hhhcceeEEEeCCCCeEEEEEc
Q 011243 468 VFMGRYHTVFDYGNLSIGFAEA 489 (490)
Q Consensus 468 ~fl~~~y~vfD~~~~~igfa~~ 489 (490)
+|||++|+|||++++|||||+|
T Consensus 305 ~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 305 TFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred HHhhccEEEEeCCCCEEeeeeC
Confidence 9999999999999999999986
No 5
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=4.9e-55 Score=444.33 Aligned_cols=300 Identities=80% Similarity=1.387 Sum_probs=265.8
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCCCCcccCCCCCceeeCCeEEEEEecCceEEEEEEEEEEEeCCeEe
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVGDLVV 148 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~dGs~~G~~~~Dtv~igg~~v 148 (490)
|+||||||++.| |||+++||++..|.....|..++.|+|++|+|++..+..+.+.|++|++.|.+++|+|++|+.++
T Consensus 15 i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~~D~v~ig~~~v 94 (317)
T cd06098 15 IGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISGFFSQDSVTVGDLVV 94 (317)
T ss_pred EEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEEEEEeeEEEECCEEE
Confidence 999999999999 99999999999996445799899999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEEeeccccccccccceEEecccCccccCCCCchhhhhhhcCCCCCCeEEEEecCCCCCCCCcEEEECCCCCCC
Q 011243 149 KNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGVDPDH 228 (490)
Q Consensus 149 ~~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~~~FSl~L~~~~~~~~~G~L~fGGiD~~~ 228 (490)
+++.||++....+..+.....+||||||++..+.....+++.+|++||+|++++||+||++..+....|.|+|||+|+++
T Consensus 95 ~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~ 174 (317)
T cd06098 95 KNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKH 174 (317)
T ss_pred CCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhh
Confidence 99999999876554455667899999999887766677899999999999999999999875434458999999999999
Q ss_pred cccceEEEeccccceeEEEEceEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCcccchhhhHHHHhhh
Q 011243 229 YKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYG 308 (490)
Q Consensus 229 ~~G~l~~~p~~~~~~w~V~l~~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 308 (490)
++|++.|+|+....+|.|.+++|+|+++.+..+.....++|||||+++++|+++++++.
T Consensus 175 ~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~--------------------- 233 (317)
T cd06098 175 FKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN--------------------- 233 (317)
T ss_pred cccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh---------------------
Confidence 99999999999889999999999999988765566778999999999999998765441
Q ss_pred HHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCCCCCCCcccchhHHHHHHHHHHhhcchhhHHHH
Q 011243 309 KTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQIL 388 (490)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (490)
T Consensus 234 -------------------------------------------------------------------------------- 233 (317)
T cd06098 234 -------------------------------------------------------------------------------- 233 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEeecccccceeeeeeEecccCCCCCCeeeecHh
Q 011243 389 NYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDV 468 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~c~~~~~~p~l~f~f~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~ 468 (490)
|.++|+....+|+|+|+|+|+.++|+|++|+++..+.....|++.|.+.+.....++.||||++
T Consensus 234 ----------------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~ 297 (317)
T cd06098 234 ----------------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDV 297 (317)
T ss_pred ----------------ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechH
Confidence 3358987778999999999999999999999987655556899999877644445568999999
Q ss_pred hhcceeEEEeCCCCeEEEEE
Q 011243 469 FMGRYHTVFDYGNLSIGFAE 488 (490)
Q Consensus 469 fl~~~y~vfD~~~~~igfa~ 488 (490)
|||++|+|||++|+|||||+
T Consensus 298 Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 298 FMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred HhcccEEEEeCCCCEEeecC
Confidence 99999999999999999995
No 6
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.3e-54 Score=441.25 Aligned_cols=307 Identities=42% Similarity=0.848 Sum_probs=271.3
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCCCCcccCCCCCceeeCCeEEEEEecCceEEEEEEEEEEEeCCeEe
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVGDLVV 148 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~dGs~~G~~~~Dtv~igg~~v 148 (490)
|+||||||++.| |||+++||++..|. ...|..++.|+|++|+|++..++.+++.|++|++.|.+++|++++|+.++
T Consensus 8 i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i~~g~~~i 86 (318)
T cd05477 8 ISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTVTVQGIII 86 (318)
T ss_pred EEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEEEECCEEE
Confidence 899999999999 99999999999997 56799899999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEEeeccccccccccceEEecccCccccCCCCchhhhhhhcCCCCCCeEEEEecCCCCCCCCcEEEECCCCCCC
Q 011243 149 KNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGVDPDH 228 (490)
Q Consensus 149 ~~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~~~FSl~L~~~~~~~~~G~L~fGGiD~~~ 228 (490)
+++.||+++...+..+.....+||||||++..+....++++++|+++|.|++++||+||++.. ....|.|+|||+|+++
T Consensus 87 ~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~fGg~d~~~ 165 (318)
T cd05477 87 TNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVFGGVDNNL 165 (318)
T ss_pred cCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEEcccCHHH
Confidence 999999999765433444567999999998887767788999999999999999999998752 2347999999999999
Q ss_pred cccceEEEeccccceeEEEEceEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCcccchhhhHHHHhhh
Q 011243 229 YKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYG 308 (490)
Q Consensus 229 ~~G~l~~~p~~~~~~w~V~l~~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 308 (490)
++|++.|+|+....+|.|.++++.++++.+.....+..++|||||+++++|++++++|.+++++.
T Consensus 166 ~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~--------------- 230 (318)
T cd05477 166 YTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQ--------------- 230 (318)
T ss_pred cCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCc---------------
Confidence 99999999999889999999999999988765556678999999999999999999999988655
Q ss_pred HHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCCCCCCCcccchhHHHHHHHHHHhhcchhhHHHH
Q 011243 309 KTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQIL 388 (490)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (490)
T Consensus 231 -------------------------------------------------------------------------------- 230 (318)
T cd05477 231 -------------------------------------------------------------------------------- 230 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEeecccccceeeeeeEecccCCCC-CCeeeecH
Q 011243 389 NYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPR-GPLWILGD 467 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~c~~~~~~p~l~f~f~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~-~~~~iLG~ 467 (490)
....+.|.+||+....+|.|+|+|+|+++.|++++|+.+. .+.|++.+.+...+... .+.||||+
T Consensus 231 ----------~~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~~~~ilG~ 296 (318)
T cd05477 231 ----------QDQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQPLWILGD 296 (318)
T ss_pred ----------cccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCCceEEEcH
Confidence 0124578999998888999999999999999999999874 35899998765432222 25799999
Q ss_pred hhhcceeEEEeCCCCeEEEEEc
Q 011243 468 VFMGRYHTVFDYGNLSIGFAEA 489 (490)
Q Consensus 468 ~fl~~~y~vfD~~~~~igfa~~ 489 (490)
+|||++|++||++++|||||+|
T Consensus 297 ~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 297 VFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred HHhhheEEEEeCCCCEEeeeeC
Confidence 9999999999999999999986
No 7
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=4.1e-54 Score=439.79 Aligned_cols=310 Identities=54% Similarity=1.007 Sum_probs=272.9
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCc-ccccCCCCcccCCCCCceeeCCeEEEEEecCceEEEEEEEEEEEeCCeE
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYF-SVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVGDLV 147 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~-~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~dGs~~G~~~~Dtv~igg~~ 147 (490)
|+||||+|++.| |||+++||++..|.. ...|..++.|+|++|+|++..++.+.+.|++|++.|.+++|++++|+..
T Consensus 16 i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~G~~~~D~v~ig~~~ 95 (329)
T cd05485 16 ITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLSGFLSTDTVSVGGVS 95 (329)
T ss_pred EEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEEEEEecCcEEECCEE
Confidence 999999999999 999999999999863 2368888899999999999999999999999999999999999999999
Q ss_pred eeeeEEEEEEeeccccccccccceEEecccCccccCCCCchhhhhhhcCCCCCCeEEEEecCCCCCCCCcEEEECCCCCC
Q 011243 148 VKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGVDPD 227 (490)
Q Consensus 148 v~~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~~~FSl~L~~~~~~~~~G~L~fGGiD~~ 227 (490)
++++.||++....+..+.....+||||||++..+.....+++.+|++||+|++++||+||.+.++....|.|+|||+|++
T Consensus 96 ~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~ 175 (329)
T cd05485 96 VKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPK 175 (329)
T ss_pred ECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHH
Confidence 99999999987654445556679999999988776667788999999999999999999987544445799999999999
Q ss_pred CcccceEEEeccccceeEEEEceEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCcccchhhhHHHHhh
Q 011243 228 HYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQY 307 (490)
Q Consensus 228 ~~~G~l~~~p~~~~~~w~V~l~~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 307 (490)
++.|+++|+|+....+|.|.++++.++++.+. ..+..++|||||+++.+|+++++++.+++++..
T Consensus 176 ~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~--~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~------------- 240 (329)
T cd05485 176 HYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFC--SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAKP------------- 240 (329)
T ss_pred HcccceEEEEcCCceEEEEEeeEEEECCeeec--CCCcEEEEccCCcceeCCHHHHHHHHHHhCCcc-------------
Confidence 99999999999988999999999999998764 456789999999999999999999998886540
Q ss_pred hHHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCCCCCCCcccchhHHHHHHHHHHhhcchhhHHH
Q 011243 308 GKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQI 387 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (490)
T Consensus 241 -------------------------------------------------------------------------------- 240 (329)
T cd05485 241 -------------------------------------------------------------------------------- 240 (329)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEeecccccceeeeeeEecccCCCCCCeeeecH
Q 011243 388 LNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGD 467 (490)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~l~f~f~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~ 467 (490)
...+.|.++|+..+++|+|+|+|+++++.|+|++|+.+....+...|++.+...++++..++.||||+
T Consensus 241 ------------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~ 308 (329)
T cd05485 241 ------------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGD 308 (329)
T ss_pred ------------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEch
Confidence 11356889999888899999999999999999999998765556789999987665444566899999
Q ss_pred hhhcceeEEEeCCCCeEEEEE
Q 011243 468 VFMGRYHTVFDYGNLSIGFAE 488 (490)
Q Consensus 468 ~fl~~~y~vfD~~~~~igfa~ 488 (490)
+|||++|+|||++++|||||+
T Consensus 309 ~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 309 VFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred HHhccceEEEeCCCCEEeecC
Confidence 999999999999999999984
No 8
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=5.2e-54 Score=436.69 Aligned_cols=300 Identities=44% Similarity=0.817 Sum_probs=266.5
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCCCCcccCCCCCceeeCCeEEEEEecCceEEEEEEEEEEEeCCeEe
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVGDLVV 148 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~dGs~~G~~~~Dtv~igg~~v 148 (490)
|+||||||++.| |||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.+++|+|++|+..+
T Consensus 15 i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~~~~D~v~ig~~~i 93 (317)
T cd05478 15 ISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGILGYDTVQVGGISD 93 (317)
T ss_pred EEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEEEEeeeEEEECCEEE
Confidence 999999999999 99999999999997 56798899999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEEeeccccccccccceEEecccCccccCCCCchhhhhhhcCCCCCCeEEEEecCCCCCCCCcEEEECCCCCCC
Q 011243 149 KNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGVDPDH 228 (490)
Q Consensus 149 ~~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~~~FSl~L~~~~~~~~~G~L~fGGiD~~~ 228 (490)
+++.||++....+........+||||||++..+.....+++++|++||+|++++||+||.+.+ ...|.|+|||+|+++
T Consensus 94 ~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~--~~~g~l~~Gg~d~~~ 171 (317)
T cd05478 94 TNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNG--QQGSVVTFGGIDPSY 171 (317)
T ss_pred CCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCC--CCCeEEEEcccCHHH
Confidence 999999998765443333457999999998877667788999999999999999999999853 347999999999999
Q ss_pred cccceEEEeccccceeEEEEceEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCcccchhhhHHHHhhh
Q 011243 229 YKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYG 308 (490)
Q Consensus 229 ~~G~l~~~p~~~~~~w~V~l~~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 308 (490)
+.|++.|+|+....+|.|.++++.|+++.+.. ..+..++|||||+++++|++++++|.+++++.
T Consensus 172 ~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~~-~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~--------------- 235 (317)
T cd05478 172 YTGSLNWVPVTAETYWQITVDSVTINGQVVAC-SGGCQAIVDTGTSLLVGPSSDIANIQSDIGAS--------------- 235 (317)
T ss_pred ccCceEEEECCCCcEEEEEeeEEEECCEEEcc-CCCCEEEECCCchhhhCCHHHHHHHHHHhCCc---------------
Confidence 99999999999889999999999999998752 34568999999999999999999999988655
Q ss_pred HHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCCCCCCCcccchhHHHHHHHHHHhhcchhhHHHH
Q 011243 309 KTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQIL 388 (490)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (490)
T Consensus 236 -------------------------------------------------------------------------------- 235 (317)
T cd05478 236 -------------------------------------------------------------------------------- 235 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEeecccccceeeeeeEecccCCCCCCeeeecHh
Q 011243 389 NYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDV 468 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~c~~~~~~p~l~f~f~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~ 468 (490)
....+.|.++|+...++|.|+|+|+|+.++|||++|+.+. .+.|++.|...+ ..+.||||++
T Consensus 236 ----------~~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~----~~~~~IlG~~ 297 (317)
T cd05478 236 ----------QNQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QGSCTSGFQSMG----LGELWILGDV 297 (317)
T ss_pred ----------cccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CCEEeEEEEeCC----CCCeEEechH
Confidence 0124568899998888999999999999999999999864 368999887542 2468999999
Q ss_pred hhcceeEEEeCCCCeEEEEE
Q 011243 469 FMGRYHTVFDYGNLSIGFAE 488 (490)
Q Consensus 469 fl~~~y~vfD~~~~~igfa~ 488 (490)
|||++|+|||++|+|||||+
T Consensus 298 fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 298 FIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred HhcceEEEEeCCCCEEeecC
Confidence 99999999999999999996
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=2.1e-53 Score=432.87 Aligned_cols=303 Identities=48% Similarity=0.897 Sum_probs=267.4
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCCCCcccCCCCCceeeCCeEEEEEecCceEEEEEEEEEEEeCCeEe
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVGDLVV 148 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~dGs~~G~~~~Dtv~igg~~v 148 (490)
|+||||+|++.| |||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.+++|++++++.++
T Consensus 15 i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G~~~~D~v~ig~~~~ 93 (320)
T cd05488 15 ITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEGFVSQDTLSIGDLTI 93 (320)
T ss_pred EEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEEEEEEeEEEECCEEE
Confidence 999999999999 99999999999997 56798888999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEEeeccccccccccceEEecccCccccCCCCchhhhhhhcCCCCCCeEEEEecCCCCCCCCcEEEECCCCCCC
Q 011243 149 KNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGVDPDH 228 (490)
Q Consensus 149 ~~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~~~FSl~L~~~~~~~~~G~L~fGGiD~~~ 228 (490)
+++.||++....+..+.....+||||||++..+.....+.+.+|++||+|++++||+||++.. ...|.|+|||+|+++
T Consensus 94 ~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~~~G~l~fGg~d~~~ 171 (320)
T cd05488 94 KKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--EDGGEATFGGIDESR 171 (320)
T ss_pred CCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--CCCcEEEECCcCHHH
Confidence 999999998765543445567999999998877656667888999999999999999999853 347999999999999
Q ss_pred cccceEEEeccccceeEEEEceEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCcccchhhhHHHHhhh
Q 011243 229 YKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYG 308 (490)
Q Consensus 229 ~~G~l~~~p~~~~~~w~V~l~~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 308 (490)
+.|++.|+|+....+|.|.+++|++|++.+.. .+..++|||||+++++|+++++++.+++++.
T Consensus 172 ~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~--------------- 234 (320)
T cd05488 172 FTGKITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDTGTSLIALPSDLAEMLNAEIGAK--------------- 234 (320)
T ss_pred cCCceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcCCcccccCCHHHHHHHHHHhCCc---------------
Confidence 99999999999888999999999999987753 4568999999999999999999999888654
Q ss_pred HHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCCCCCCCcccchhHHHHHHHHHHhhcchhhHHHH
Q 011243 309 KTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQIL 388 (490)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (490)
T Consensus 235 -------------------------------------------------------------------------------- 234 (320)
T cd05488 235 -------------------------------------------------------------------------------- 234 (320)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEeecccccceeeeeeEecccCCCCCCeeeecHh
Q 011243 389 NYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDV 468 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~c~~~~~~p~l~f~f~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~ 468 (490)
....+.|.+||+....+|.|+|+|+|+++.|+|++|+.+.. +.|++.+.+.+.+...++.||||++
T Consensus 235 ----------~~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~----g~C~~~~~~~~~~~~~~~~~ilG~~ 300 (320)
T cd05488 235 ----------KSWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEVS----GSCISAFTGMDFPEPVGPLAIVGDA 300 (320)
T ss_pred ----------cccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecCC----CeEEEEEEECcCCCCCCCeEEEchH
Confidence 01245688999988889999999999999999999998532 4799999876543334568999999
Q ss_pred hhcceeEEEeCCCCeEEEEE
Q 011243 469 FMGRYHTVFDYGNLSIGFAE 488 (490)
Q Consensus 469 fl~~~y~vfD~~~~~igfa~ 488 (490)
|||++|++||++++|||||+
T Consensus 301 fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 301 FLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred HhhheEEEEeCCCCEEeecC
Confidence 99999999999999999995
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=9e-52 Score=436.18 Aligned_cols=302 Identities=33% Similarity=0.651 Sum_probs=260.3
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCCCCcccCCCCCceeeCCeEEEEEecCceEEEEEEEEEEEeCCeEe
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVGDLVV 148 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~dGs~~G~~~~Dtv~igg~~v 148 (490)
|+||||||++.| |||+++||++..|. ...|..++.|+|+.|+|++..++.+.+.|++|++.|.+++|+|++|+.++
T Consensus 144 I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~GsvsG~~~~DtVtiG~~~v 222 (453)
T PTZ00147 144 AKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMNYVSGTVSGFFSKDLVTIGNLSV 222 (453)
T ss_pred EEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEEeCCCCEEEEEEEEEEEECCEEE
Confidence 999999999999 99999999999997 56799899999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEEeeccc--cccccccceEEecccCccccCCCCchhhhhhhcCCCCCCeEEEEecCCCCCCCCcEEEECCCCC
Q 011243 149 KNQDFIEATKEASI--TFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGVDP 226 (490)
Q Consensus 149 ~~~~FG~~~~~~~~--~~~~~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~~~FSl~L~~~~~~~~~G~L~fGGiD~ 226 (490)
++ .|+++.+..+. .+.....+||||||++..+.....|++.+|++||+|++++||+||.+.+ ...|.|+|||+|+
T Consensus 223 ~~-qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~--~~~G~L~fGGiD~ 299 (453)
T PTZ00147 223 PY-KFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPED--KHKGYLTIGGIEE 299 (453)
T ss_pred EE-EEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCC--CCCeEEEECCcCh
Confidence 84 68877765431 2334567999999999877767788999999999999999999998642 3479999999999
Q ss_pred CCcccceEEEeccccceeEEEEceEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCcccchhhhHHHHh
Q 011243 227 DHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQ 306 (490)
Q Consensus 227 ~~~~G~l~~~p~~~~~~w~V~l~~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (490)
++|+|++.|+|+....+|.|.++ +.+++... ....|+|||||+++++|+++++++.+++++..
T Consensus 300 ~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~~----~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~------------ 362 (453)
T PTZ00147 300 RFYEGPLTYEKLNHDLYWQVDLD-VHFGNVSS----EKANVIVDSGTSVITVPTEFLNKFVESLDVFK------------ 362 (453)
T ss_pred hhcCCceEEEEcCCCceEEEEEE-EEECCEec----CceeEEECCCCchhcCCHHHHHHHHHHhCCee------------
Confidence 99999999999998899999998 57776432 45789999999999999999999999886540
Q ss_pred hhHHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCCCCCCCcccchhHHHHHHHHHHhhcchhhHH
Q 011243 307 YGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQ 386 (490)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (490)
T Consensus 363 -------------------------------------------------------------------------------- 362 (453)
T PTZ00147 363 -------------------------------------------------------------------------------- 362 (453)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEeecccccceeeeeeEecccCCCCCCeeeec
Q 011243 387 ILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILG 466 (490)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~l~f~f~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG 466 (490)
. ...+.|.++|+. ..+|+++|+|+|+.++|+|++|+.+..+...+.|++.+.+.+. ..+.||||
T Consensus 363 -----------~-~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~---~~~~~ILG 426 (453)
T PTZ00147 363 -----------V-PFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLNIIPIDL---EKNTFILG 426 (453)
T ss_pred -----------c-CCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCCCcEEEEEEEECCC---CCCCEEEC
Confidence 0 113457889986 5799999999999999999999987554455689999987542 23589999
Q ss_pred HhhhcceeEEEeCCCCeEEEEEcC
Q 011243 467 DVFMGRYHTVFDYGNLSIGFAEAA 490 (490)
Q Consensus 467 ~~fl~~~y~vfD~~~~~igfa~~~ 490 (490)
++|||++|+|||++++|||||+++
T Consensus 427 d~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 427 DPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred HHHhccEEEEEECCCCEEEEEEec
Confidence 999999999999999999999985
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=2.5e-51 Score=432.09 Aligned_cols=302 Identities=33% Similarity=0.630 Sum_probs=258.5
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCCCCcccCCCCCceeeCCeEEEEEecCceEEEEEEEEEEEeCCeEe
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVGDLVV 148 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~dGs~~G~~~~Dtv~igg~~v 148 (490)
|+||||||++.| |||+++||++..|. ...|..++.|+|+.|+|++..++.+.+.|++|++.|.+++|+|++|+.++
T Consensus 143 i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~Gsv~G~~~~Dtv~iG~~~~ 221 (450)
T PTZ00013 143 GEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSM 221 (450)
T ss_pred EEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEEECCceEEEEEEEEEEEECCEEE
Confidence 999999999999 99999999999997 56899999999999999999999999999999999999999999999998
Q ss_pred eeeEEEEEEeecc--ccccccccceEEecccCccccCCCCchhhhhhhcCCCCCCeEEEEecCCCCCCCCcEEEECCCCC
Q 011243 149 KNQDFIEATKEAS--ITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGVDP 226 (490)
Q Consensus 149 ~~~~FG~~~~~~~--~~~~~~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~~~FSl~L~~~~~~~~~G~L~fGGiD~ 226 (490)
+ ..|+++..... ..+....++||||||++..+.....+++++|++||+|++++||+||++.+ ...|.|+|||+|+
T Consensus 222 ~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~--~~~G~L~fGGiD~ 298 (450)
T PTZ00013 222 P-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHD--VHAGYLTIGGIEE 298 (450)
T ss_pred c-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEecCCC--CCCCEEEECCcCc
Confidence 7 56777765432 12334567999999999877666788999999999999999999998642 3479999999999
Q ss_pred CCcccceEEEeccccceeEEEEceEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCcccchhhhHHHHh
Q 011243 227 DHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQ 306 (490)
Q Consensus 227 ~~~~G~l~~~p~~~~~~w~V~l~~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (490)
++|.|++.|+|+....+|.|.++ +.++.... ....|+|||||+++++|+++++++.+++++..
T Consensus 299 ~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~------------ 361 (450)
T PTZ00013 299 KFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNKFFANLNVIK------------ 361 (450)
T ss_pred cccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHHHHHHhCCee------------
Confidence 99999999999998899999998 66665432 45679999999999999999999999886540
Q ss_pred hhHHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCCCCCCCcccchhHHHHHHHHHHhhcchhhHH
Q 011243 307 YGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQ 386 (490)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (490)
T Consensus 362 -------------------------------------------------------------------------------- 361 (450)
T PTZ00013 362 -------------------------------------------------------------------------------- 361 (450)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEeecccccceeeeeeEecccCCCCCCeeeec
Q 011243 387 ILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILG 466 (490)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~l~f~f~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG 466 (490)
....+.|.++|+. ..+|+|+|+|+|.+++|+|++|+.+....+...|++.+.+.+ ...+.||||
T Consensus 362 ------------~~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~---~~~~~~ILG 425 (450)
T PTZ00013 362 ------------VPFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMITMLPVD---IDDNTFILG 425 (450)
T ss_pred ------------cCCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCCCCeeEEEEEECC---CCCCCEEEC
Confidence 0123458889986 578999999999999999999998654334468999998653 233589999
Q ss_pred HhhhcceeEEEeCCCCeEEEEEcC
Q 011243 467 DVFMGRYHTVFDYGNLSIGFAEAA 490 (490)
Q Consensus 467 ~~fl~~~y~vfD~~~~~igfa~~~ 490 (490)
++|||++|+|||++++|||||+++
T Consensus 426 d~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 426 DPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred HHHhccEEEEEECCCCEEEEEEeC
Confidence 999999999999999999999985
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.4e-51 Score=416.44 Aligned_cols=308 Identities=37% Similarity=0.703 Sum_probs=273.5
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCCCCcccCCCCCceeeCCeEEEEEecCceEEEEEEEEEEEeCCeEe
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVGDLVV 148 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~dGs~~G~~~~Dtv~igg~~v 148 (490)
|+||||+|++.| |||+++||+++.|..+..|.....|+++.|+|++..++.+.+.|++|++.|.+++|+++||+..+
T Consensus 6 v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~ig~~~~ 85 (317)
T PF00026_consen 6 VTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSIGGLTI 85 (317)
T ss_dssp EEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEE
T ss_pred EEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEeeeeccc
Confidence 899999999999 99999999999997444688889999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEEeeccccccccccceEEecccCccccCC-CCchhhhhhhcCCCCCCeEEEEecCCCCCCCCcEEEECCCCCC
Q 011243 149 KNQDFIEATKEASITFLAAKFDGILGLGFQEISIGK-AIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGVDPD 227 (490)
Q Consensus 149 ~~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~~~-~~~~~~~L~~qG~I~~~~FSl~L~~~~~~~~~G~L~fGGiD~~ 227 (490)
+++.||++....+..+.....+|+||||++..+... .++++++|+++|+|++++||++|++.. ...|.|+|||+|++
T Consensus 86 ~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~Gg~d~~ 163 (317)
T PF00026_consen 86 PNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFGGYDPS 163 (317)
T ss_dssp EEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEESSEEGG
T ss_pred cccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheeeccccc
Confidence 999999999865554566778999999988766554 788999999999999999999999974 45799999999999
Q ss_pred CcccceEEEeccccceeEEEEceEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCcccchhhhHHHHhh
Q 011243 228 HYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQY 307 (490)
Q Consensus 228 ~~~G~l~~~p~~~~~~w~V~l~~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 307 (490)
+++|++.|+|+....+|.|.+++|.+++.... ......++||||++++++|.++++++++.+++..
T Consensus 164 ~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~~-~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~------------- 229 (317)
T PF00026_consen 164 KYDGDLVWVPLVSSGYWSVPLDSISIGGESVF-SSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSY------------- 229 (317)
T ss_dssp GEESEEEEEEBSSTTTTEEEEEEEEETTEEEE-EEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEE-------------
T ss_pred cccCceeccCcccccccccccccccccccccc-cccceeeecccccccccccchhhHHHHhhhcccc-------------
Confidence 99999999999999999999999999999322 3455789999999999999999999999997771
Q ss_pred hHHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCCCCCCCcccchhHHHHHHHHHHhhcchhhHHH
Q 011243 308 GKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQI 387 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (490)
T Consensus 230 -------------------------------------------------------------------------------- 229 (317)
T PF00026_consen 230 -------------------------------------------------------------------------------- 229 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEeecccccceeeeeeEecccCCCCCCeeeecH
Q 011243 388 LNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGD 467 (490)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~l~f~f~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~ 467 (490)
..+.|.++|+....+|.++|+|++.+++|+|++|+.+..+.....|++.|...+. ......++||.
T Consensus 230 -------------~~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~~~~~iLG~ 295 (317)
T PF00026_consen 230 -------------SDGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS-SDDSDDWILGS 295 (317)
T ss_dssp -------------ECSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESS-TTSSSEEEEEH
T ss_pred -------------cceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccc-cccCCceEecH
Confidence 0157999999888899999999999999999999999877666699999998654 44567999999
Q ss_pred hhhcceeEEEeCCCCeEEEEEc
Q 011243 468 VFMGRYHTVFDYGNLSIGFAEA 489 (490)
Q Consensus 468 ~fl~~~y~vfD~~~~~igfa~~ 489 (490)
+|||++|++||++++|||||+|
T Consensus 296 ~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 296 PFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp HHHTTEEEEEETTTTEEEEEEE
T ss_pred HHhhceEEEEeCCCCEEEEecC
Confidence 9999999999999999999997
No 13
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=5.1e-47 Score=378.42 Aligned_cols=214 Identities=34% Similarity=0.509 Sum_probs=185.9
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCCCCcccCCCCCceee-CCeEEEEEecCce-EEEEEEEEEEEeCCe
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKR-NGTSAAIQYGTGA-ISGFFSQDNVKVGDL 146 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~-~~~~~~~~Y~dGs-~~G~~~~Dtv~igg~ 146 (490)
|+||||||++.| |||+++||++..|. ...|..+..|++++|+|++. .++.+.+.|++|+ +.|.+++|+|+||+.
T Consensus 5 i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ig~~ 83 (278)
T cd06097 5 VKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVSIGGV 83 (278)
T ss_pred EEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEEECCE
Confidence 889999999999 99999999999987 33455677899999999987 5789999999998 899999999999999
Q ss_pred EeeeeEEEEEEeeccccccccccceEEecccCccccC---CCCchhhhhhhcCCCCCCeEEEEecCCCCCCCCcEEEECC
Q 011243 147 VVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIG---KAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGG 223 (490)
Q Consensus 147 ~v~~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~~---~~~~~~~~L~~qG~I~~~~FSl~L~~~~~~~~~G~L~fGG 223 (490)
+++++.||+++......+....++||||||++..+.. ..++++++|.+++. +++||+||++. ..|+|+|||
T Consensus 84 ~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l~fGg 157 (278)
T cd06097 84 EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFYTFGY 157 (278)
T ss_pred EECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEEEEec
Confidence 9999999999887554455567899999999876542 35678999999975 79999999873 379999999
Q ss_pred CCCCCcccceEEEeccc-cceeEEEEceEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCC
Q 011243 224 VDPDHYKGEHTYVPVTK-KGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 293 (490)
Q Consensus 224 iD~~~~~G~l~~~p~~~-~~~w~V~l~~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~ 293 (490)
+|++++.|+++|+|+.. ..+|.|.+++|+++++... ...+..++|||||+++++|+++++++.+++++.
T Consensus 158 ~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~ 227 (278)
T cd06097 158 IDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVPGA 227 (278)
T ss_pred cChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCcCC
Confidence 99999999999999986 7899999999999987432 346788999999999999999999999998433
No 14
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.2e-45 Score=382.39 Aligned_cols=308 Identities=25% Similarity=0.425 Sum_probs=238.8
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCCCCcccCCCCCceeeCCeEEEEEecCceEEEEEEEEEEEeCCeEe
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVGDLVV 148 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~dGs~~G~~~~Dtv~igg~~v 148 (490)
|+||||+|++.| |||+++||++..| |..++.|+|++|+|++..++.+++.|++|++.|.+++|+|+||+...
T Consensus 8 i~iGtP~Q~~~v~~DTGSs~lWv~~~~~-----~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ig~~~~ 82 (364)
T cd05473 8 MLIGTPPQKLNILVDTGSSNFAVAAAPH-----PFIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVSIPKGPN 82 (364)
T ss_pred EEecCCCceEEEEEecCCcceEEEcCCC-----ccccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEEECCCCc
Confidence 899999999999 9999999998876 33467899999999999999999999999999999999999986311
Q ss_pred e--eeEEEEEEeeccccccccccceEEecccCcccc--CCCCchhhhhhhcCCCCCCeEEEEecCCC-------CCCCCc
Q 011243 149 K--NQDFIEATKEASITFLAAKFDGILGLGFQEISI--GKAIPVWYNMLDQGLVKEPVFSFWLNRDI-------EGEEGG 217 (490)
Q Consensus 149 ~--~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~--~~~~~~~~~L~~qG~I~~~~FSl~L~~~~-------~~~~~G 217 (490)
. .+.|+++.............+||||||++..+. ....+++++|++|+.+ +++||+||+... .....|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~~~~~~~~g 161 (364)
T cd05473 83 VTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNGSASGTVGG 161 (364)
T ss_pred cceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEecccccccccccccCCCc
Confidence 1 122344443332222234579999999987753 3467899999999997 579999996421 123479
Q ss_pred EEEECCCCCCCcccceEEEeccccceeEEEEceEEEcCeeccccCC---CceEEEcCCCCCcccCHHHHHHHHHHhcCCc
Q 011243 218 EIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCST---GCNAIADSGTSLLAGPTTIITQINHAIGASG 294 (490)
Q Consensus 218 ~L~fGGiD~~~~~G~l~~~p~~~~~~w~V~l~~i~vgg~~i~~~~~---~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~ 294 (490)
.|+|||+|++++.|++.|+|+....+|.|.+++|+|+++.+..... ...++|||||++++||+++++++.+++++..
T Consensus 162 ~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~ 241 (364)
T cd05473 162 SMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAAS 241 (364)
T ss_pred EEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999888999999999999988764322 2469999999999999999999999997651
Q ss_pred ccchhhhHHHHhhhHHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCCCCCCCcccchhHHHHHHH
Q 011243 295 VISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWM 374 (490)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (490)
. .+
T Consensus 242 ~------------------------~~----------------------------------------------------- 244 (364)
T cd05473 242 L------------------------IE----------------------------------------------------- 244 (364)
T ss_pred c------------------------cc-----------------------------------------------------
Confidence 0 00
Q ss_pred HHHhhcchhhHHHHHhhhhhccCCCCC-CCceeeeCCCCC-----CCCcEEEEECC------EEEEeCcccceEeecc-c
Q 011243 375 QNKLRRNETADQILNYVNQLCDRLPSP-NGESAVDCDNLS-----SMPNVSFTIGG------KVFDLAPNEYVLEVGE-G 441 (490)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~c~~~~-----~~p~l~f~f~g------~~~~i~~~~y~~~~~~-~ 441 (490)
..+.. .+.+.++|.... .+|+|+|+|+| .++.|+|++|+.+... .
T Consensus 245 ----------------------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~ 302 (364)
T cd05473 245 ----------------------DFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHG 302 (364)
T ss_pred ----------------------cCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCC
Confidence 00011 122456886543 58999999975 4789999999986432 2
Q ss_pred ccceeee-eeEecccCCCCCCeeeecHhhhcceeEEEeCCCCeEEEEEcC
Q 011243 442 VAAQCIS-GFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 490 (490)
Q Consensus 442 ~~~~C~~-~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 490 (490)
....|+. .+. ...+.||||+.|||++|+|||++++|||||+++
T Consensus 303 ~~~~C~~~~~~------~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~ 346 (364)
T cd05473 303 TQLDCYKFAIS------QSTNGTVIGAVIMEGFYVVFDRANKRVGFAVST 346 (364)
T ss_pred CcceeeEEeee------cCCCceEEeeeeEcceEEEEECCCCEEeeEecc
Confidence 2457975 222 123469999999999999999999999999864
No 15
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=3.4e-45 Score=367.42 Aligned_cols=270 Identities=30% Similarity=0.518 Sum_probs=233.3
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCCCCcccCCCCCceeeCCeEEEEEecCce-EEEEEEEEEEEeCCeE
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDNVKVGDLV 147 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~dGs-~~G~~~~Dtv~igg~~ 147 (490)
|+||||+|++.| |||+++||+ .|++.|++|. +.|.+++|+|++++..
T Consensus 7 i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~~g~~~ 57 (295)
T cd05474 7 LSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVSIGGAT 57 (295)
T ss_pred EEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEEECCeE
Confidence 899999999999 999999997 5788999965 9999999999999999
Q ss_pred eeeeEEEEEEeeccccccccccceEEecccCcccc-----CCCCchhhhhhhcCCCCCCeEEEEecCCCCCCCCcEEEEC
Q 011243 148 VKNQDFIEATKEASITFLAAKFDGILGLGFQEISI-----GKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFG 222 (490)
Q Consensus 148 v~~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~-----~~~~~~~~~L~~qG~I~~~~FSl~L~~~~~~~~~G~L~fG 222 (490)
++++.||+++... ..+|+||||++..+. ...++++++|++||+|++++||+||++.+ ...|.|+||
T Consensus 58 ~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g~l~~G 128 (295)
T cd05474 58 VKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTGSILFG 128 (295)
T ss_pred ecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCceeEEEe
Confidence 9999999998742 348999999987643 24567999999999999999999999752 347999999
Q ss_pred CCCCCCcccceEEEecccc------ceeEEEEceEEEcCeecc--ccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCc
Q 011243 223 GVDPDHYKGEHTYVPVTKK------GYWQFEMGDVLIDGETTG--YCSTGCNAIADSGTSLLAGPTTIITQINHAIGASG 294 (490)
Q Consensus 223 GiD~~~~~G~l~~~p~~~~------~~w~V~l~~i~vgg~~i~--~~~~~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~ 294 (490)
|+|++++.|++.|+|+... .+|.|.+++|.+++..+. .......++|||||++++||.+++++|.+++++..
T Consensus 129 g~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~ 208 (295)
T cd05474 129 GVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATY 208 (295)
T ss_pred eeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHHhCCEE
Confidence 9999999999999999765 689999999999998753 23456789999999999999999999999997650
Q ss_pred ccchhhhHHHHhhhHHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCCCCCCCcccchhHHHHHHH
Q 011243 295 VISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWM 374 (490)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (490)
T Consensus 209 -------------------------------------------------------------------------------- 208 (295)
T cd05474 209 -------------------------------------------------------------------------------- 208 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcchhhHHHHHhhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECCEEEEeCcccceEeecc--cccceeeeeeEe
Q 011243 375 QNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGE--GVAAQCISGFTA 452 (490)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~l~f~f~g~~~~i~~~~y~~~~~~--~~~~~C~~~~~~ 452 (490)
....+.|.++|..... |+|+|+|+|++++||+++|+.+... ...+.|++.+.+
T Consensus 209 ------------------------~~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~~i~~ 263 (295)
T cd05474 209 ------------------------DSDEGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACYLGIQP 263 (295)
T ss_pred ------------------------cCCCcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEEEEEe
Confidence 0123568899998766 9999999999999999999987642 345789999986
Q ss_pred cccCCCCCCeeeecHhhhcceeEEEeCCCCeEEEEEc
Q 011243 453 FDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 489 (490)
Q Consensus 453 ~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 489 (490)
.+ .+.||||++|||++|++||++++|||||+|
T Consensus 264 ~~-----~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 264 ST-----SDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred CC-----CCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 43 168999999999999999999999999986
No 16
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=4.9e-44 Score=364.99 Aligned_cols=273 Identities=27% Similarity=0.432 Sum_probs=226.4
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccC--CCCcccCCCCCceeeC----------------CeEEEEEecCc
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCY--FHSKYKSSHSSTYKRN----------------GTSAAIQYGTG 130 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~--~~~~y~p~~SsT~~~~----------------~~~~~~~Y~dG 130 (490)
|+||||||++.| |||+++||++..|. .|. .++.|+|++|+|++.. .+.+.+.|++|
T Consensus 8 i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~i~Y~~g 84 (326)
T cd06096 8 IFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYSISYSEG 84 (326)
T ss_pred EEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEEEEECCC
Confidence 899999999988 99999999999887 454 4578999999999763 56899999999
Q ss_pred e-EEEEEEEEEEEeCCeEee-------eeEEEEEEeeccccccccccceEEecccCccccCCCCchhhhhhhcCCCCC--
Q 011243 131 A-ISGFFSQDNVKVGDLVVK-------NQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKE-- 200 (490)
Q Consensus 131 s-~~G~~~~Dtv~igg~~v~-------~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~-- 200 (490)
+ +.|.+++|+|+||+..++ ++.|||+....+. +.....+||||||++..+. ..+....|++++.+..
T Consensus 85 s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~~~~~~~ 161 (326)
T cd06096 85 SSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNL-FLTQQATGILGLSLTKNNG--LPTPIILLFTKRPKLKKD 161 (326)
T ss_pred CceeeEEEEEEEEeccCCCCccccccccEEeccCccccCc-ccccccceEEEccCCcccc--cCchhHHHHHhcccccCC
Confidence 8 899999999999986653 4679998876543 4455679999999986542 2234445778877665
Q ss_pred CeEEEEecCCCCCCCCcEEEECCCCCCCcc----------cceEEEeccccceeEEEEceEEEcCee-ccccCCCceEEE
Q 011243 201 PVFSFWLNRDIEGEEGGEIVFGGVDPDHYK----------GEHTYVPVTKKGYWQFEMGDVLIDGET-TGYCSTGCNAIA 269 (490)
Q Consensus 201 ~~FSl~L~~~~~~~~~G~L~fGGiD~~~~~----------G~l~~~p~~~~~~w~V~l~~i~vgg~~-i~~~~~~~~aii 269 (490)
++||+||++. .|.|+|||+|+.++. +++.|+|+....+|.|.+++|+++++. .........++|
T Consensus 162 ~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~aiv 236 (326)
T cd06096 162 KIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTKGLGMLV 236 (326)
T ss_pred ceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceecccCCCEEE
Confidence 9999999874 699999999999987 889999999889999999999999886 111346778999
Q ss_pred cCCCCCcccCHHHHHHHHHHhcCCcccchhhhHHHHhhhHHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeecc
Q 011243 270 DSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDK 349 (490)
Q Consensus 270 DSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (490)
||||++++||+++++++.++
T Consensus 237 DSGTs~~~lp~~~~~~l~~~------------------------------------------------------------ 256 (326)
T cd06096 237 DSGSTLSHFPEDLYNKINNF------------------------------------------------------------ 256 (326)
T ss_pred eCCCCcccCCHHHHHHHHhh------------------------------------------------------------
Confidence 99999999999999887542
Q ss_pred CCCCCCCCCCCCcccchhHHHHHHHHHHhhcchhhHHHHHhhhhhccCCCCCCCceeeeCCCCCCCCcEEEEEC-CEEEE
Q 011243 350 SSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIG-GKVFD 428 (490)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~l~f~f~-g~~~~ 428 (490)
+|+|+|+|+ |+.++
T Consensus 257 -----------------------------------------------------------------~P~i~~~f~~g~~~~ 271 (326)
T cd06096 257 -----------------------------------------------------------------FPTITIIFENNLKID 271 (326)
T ss_pred -----------------------------------------------------------------cCcEEEEEcCCcEEE
Confidence 289999998 89999
Q ss_pred eCcccceEeecccccceeeeeeEecccCCCCCCeeeecHhhhcceeEEEeCCCCeEEEEEc
Q 011243 429 LAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 489 (490)
Q Consensus 429 i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 489 (490)
++|++|+.+..+. .|...+.. ..+.+|||++|||++|+|||++++|||||++
T Consensus 272 i~p~~y~~~~~~~---~c~~~~~~------~~~~~ILG~~flr~~y~vFD~~~~riGfa~~ 323 (326)
T cd06096 272 WKPSSYLYKKESF---WCKGGEKS------VSNKPILGASFFKNKQIIFDLDNNRIGFVES 323 (326)
T ss_pred ECHHHhccccCCc---eEEEEEec------CCCceEEChHHhcCcEEEEECcCCEEeeEcC
Confidence 9999999875432 47666542 2357999999999999999999999999986
No 17
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-43 Score=367.97 Aligned_cols=301 Identities=42% Similarity=0.748 Sum_probs=247.7
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCC-CCc-ccCCCCCceeeCCeE------------------EEEEec
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYF-HSK-YKSSHSSTYKRNGTS------------------AAIQYG 128 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~-~~~-y~p~~SsT~~~~~~~------------------~~~~Y~ 128 (490)
|+||||||+|.| |||+++||++..|.. .|.. +.. |+|+.|+|++..++. |.+.|+
T Consensus 51 i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~C~y~i~Yg 128 (398)
T KOG1339|consen 51 ISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSSCPYSIQYG 128 (398)
T ss_pred EecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCccccccccCcccCCcCceEEEeC
Confidence 999999999999 999999999998862 6764 444 999999999987743 999999
Q ss_pred Cce-EEEEEEEEEEEeCC---eEeeeeEEEEEEeeccccccc-cccceEEecccCccccCCCCchhhhhhhcCCCCCCeE
Q 011243 129 TGA-ISGFFSQDNVKVGD---LVVKNQDFIEATKEASITFLA-AKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVF 203 (490)
Q Consensus 129 dGs-~~G~~~~Dtv~igg---~~v~~~~FG~~~~~~~~~~~~-~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~~~F 203 (490)
+|+ +.|.+++|+|++++ ..++++.|||+..+.+. +.. .+.+||||||+...+.... +...+... ++|
T Consensus 129 d~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q------~~~~~~~~-~~F 200 (398)
T KOG1339|consen 129 DGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQ------LPSFYNAI-NVF 200 (398)
T ss_pred CCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceee------cccccCCc-eeE
Confidence 955 99999999999998 78888999999988764 333 6789999999998874333 33322222 389
Q ss_pred EEEecCCCCC-CCCcEEEECCCCCCCcccceEEEeccccc--eeEEEEceEEEcCee----ccccCCCceEEEcCCCCCc
Q 011243 204 SFWLNRDIEG-EEGGEIVFGGVDPDHYKGEHTYVPVTKKG--YWQFEMGDVLIDGET----TGYCSTGCNAIADSGTSLL 276 (490)
Q Consensus 204 Sl~L~~~~~~-~~~G~L~fGGiD~~~~~G~l~~~p~~~~~--~w~V~l~~i~vgg~~----i~~~~~~~~aiiDSGtt~~ 276 (490)
|+||.+.... ...|.|+||++|+.++.|.+.|+|+.... +|.|.+.+|.|+++. ..+......+++||||+++
T Consensus 201 S~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDSGTs~t 280 (398)
T KOG1339|consen 201 SYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDSGTSLT 280 (398)
T ss_pred EEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceEecCCCCEEEECCccee
Confidence 9999987533 25899999999999999999999998877 999999999999853 2222235889999999999
Q ss_pred ccCHHHHHHHHHHhcCCcccchhhhHHHHhhhHHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCC
Q 011243 277 AGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSD 356 (490)
Q Consensus 277 ~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (490)
+||+++|+++.+++++.-
T Consensus 281 ~lp~~~y~~i~~~~~~~~-------------------------------------------------------------- 298 (398)
T KOG1339|consen 281 YLPTSAYNALREAIGAEV-------------------------------------------------------------- 298 (398)
T ss_pred eccHHHHHHHHHHHHhhe--------------------------------------------------------------
Confidence 999999999999997650
Q ss_pred CCCCCcccchhHHHHHHHHHHhhcchhhHHHHHhhhhhccCCCCCCCceeeeCCCCCC----CCcEEEEEC-CEEEEeCc
Q 011243 357 GVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSS----MPNVSFTIG-GKVFDLAP 431 (490)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~----~p~l~f~f~-g~~~~i~~ 431 (490)
+.....+.+.++|..... +|.|+|+|+ |+.+.+++
T Consensus 299 ----------------------------------------~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~ 338 (398)
T KOG1339|consen 299 ----------------------------------------SVVGTDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPP 338 (398)
T ss_pred ----------------------------------------eccccCCceeeecccCCCCcccCCcEEEEECCCcEEEeCc
Confidence 001235667889987766 999999999 89999999
Q ss_pred ccceEeecccccceeeeeeEecccCCCCCCeeeecHhhhcceeEEEeCC-CCeEEEEEc
Q 011243 432 NEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYG-NLSIGFAEA 489 (490)
Q Consensus 432 ~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~-~~~igfa~~ 489 (490)
++|+++..+.... |...+...+. .+.||||+.|+++++++||.. ++|||||++
T Consensus 339 ~~y~~~~~~~~~~-Cl~~~~~~~~----~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~ 392 (398)
T KOG1339|consen 339 KNYLVEVSDGGGV-CLAFFNGMDS----GPLWILGDVFQQNYLVVFDLGENSRVGFAPA 392 (398)
T ss_pred cceEEEECCCCCc-eeeEEecCCC----CceEEEchHHhCCEEEEEeCCCCCEEEeccc
Confidence 9999987754322 9988875432 168999999999999999999 999999985
No 18
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=366.60 Aligned_cols=293 Identities=20% Similarity=0.359 Sum_probs=226.2
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccC--CCCcccCCCCCceeeCC--------------------eEEEEE
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCY--FHSKYKSSHSSTYKRNG--------------------TSAAIQ 126 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~--~~~~y~p~~SsT~~~~~--------------------~~~~~~ 126 (490)
|+||||||++.| |||+++||+|.+|. .|. .++.|||++|+|++... +.|.+.
T Consensus 89 i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~ 165 (431)
T PLN03146 89 ISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYS 165 (431)
T ss_pred EEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEE
Confidence 999999999988 99999999998886 576 45789999999998642 789999
Q ss_pred ecCce-EEEEEEEEEEEeCC-----eEeeeeEEEEEEeeccccccccccceEEecccCccccCCCCchhhhhhhcCCCCC
Q 011243 127 YGTGA-ISGFFSQDNVKVGD-----LVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKE 200 (490)
Q Consensus 127 Y~dGs-~~G~~~~Dtv~igg-----~~v~~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~ 200 (490)
|+||+ +.|.+++|+++|++ ..++++.|||+....+. +. ...+||||||+...+ ++.+|..+ +.
T Consensus 166 Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql~~~--~~- 234 (431)
T PLN03146 166 YGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQLGSS--IG- 234 (431)
T ss_pred eCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHhhHh--hC-
Confidence 99999 69999999999997 46889999999876543 22 256899999997655 56666543 44
Q ss_pred CeEEEEecCCC-CCCCCcEEEECCCCCCCccc-ceEEEeccc---cceeEEEEceEEEcCeeccccCC------CceEEE
Q 011243 201 PVFSFWLNRDI-EGEEGGEIVFGGVDPDHYKG-EHTYVPVTK---KGYWQFEMGDVLIDGETTGYCST------GCNAIA 269 (490)
Q Consensus 201 ~~FSl~L~~~~-~~~~~G~L~fGGiD~~~~~G-~l~~~p~~~---~~~w~V~l~~i~vgg~~i~~~~~------~~~aii 269 (490)
+.||+||.+.. +....|.|+||+. .++.| .+.|+|+.. ..+|.|.+++|+||++.+..+.. ...++|
T Consensus 235 ~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~ii 312 (431)
T PLN03146 235 GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIII 312 (431)
T ss_pred CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEE
Confidence 49999997532 2345899999984 55554 488999973 36899999999999998764332 247999
Q ss_pred cCCCCCcccCHHHHHHHHHHhcCCcccchhhhHHHHhhhHHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeecc
Q 011243 270 DSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDK 349 (490)
Q Consensus 270 DSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (490)
||||++++||+++|+++.+++... +... +
T Consensus 313 DSGTt~t~Lp~~~y~~l~~~~~~~----------~~~~-------------~---------------------------- 341 (431)
T PLN03146 313 DSGTTLTLLPSDFYSELESAVEEA----------IGGE-------------R---------------------------- 341 (431)
T ss_pred eCCccceecCHHHHHHHHHHHHHH----------hccc-------------c----------------------------
Confidence 999999999999999998887443 0000 0
Q ss_pred CCCCCCCCCCCCcccchhHHHHHHHHHHhhcchhhHHHHHhhhhhccCCCCCCCceeeeCCCC---CCCCcEEEEECCEE
Q 011243 350 SSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNL---SSMPNVSFTIGGKV 426 (490)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~p~l~f~f~g~~ 426 (490)
.....+ +..+|... ..+|.|+|+|+|+.
T Consensus 342 ------------------------------------------------~~~~~~-~~~~C~~~~~~~~~P~i~~~F~Ga~ 372 (431)
T PLN03146 342 ------------------------------------------------VSDPQG-LLSLCYSSTSDIKLPIITAHFTGAD 372 (431)
T ss_pred ------------------------------------------------CCCCCC-CCCccccCCCCCCCCeEEEEECCCe
Confidence 000000 12234321 36899999999999
Q ss_pred EEeCcccceEeecccccceeeeeeEecccCCCCCCeeeecHhhhcceeEEEeCCCCeEEEEEc
Q 011243 427 FDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 489 (490)
Q Consensus 427 ~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 489 (490)
+.|+|++|+++..+ ...|+..+. ..+.||||+.|||++|++||++++|||||++
T Consensus 373 ~~l~~~~~~~~~~~--~~~Cl~~~~-------~~~~~IlG~~~q~~~~vvyDl~~~~igFa~~ 426 (431)
T PLN03146 373 VKLQPLNTFVKVSE--DLVCFAMIP-------TSSIAIFGNLAQMNFLVGYDLESKTVSFKPT 426 (431)
T ss_pred eecCcceeEEEcCC--CcEEEEEec-------CCCceEECeeeEeeEEEEEECCCCEEeeecC
Confidence 99999999998654 257974332 1246999999999999999999999999986
No 19
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.5e-42 Score=341.87 Aligned_cols=220 Identities=44% Similarity=0.804 Sum_probs=193.0
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCCCCc--ccCCCCCceeeCCeEEEEEecCceEEEEEEEEEEEeCCe
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYFHSK--YKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVGDL 146 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~~~~--y~p~~SsT~~~~~~~~~~~Y~dGs~~G~~~~Dtv~igg~ 146 (490)
|+||||+|++.| |||+++||++..|. ...|..... |++..|+++....+.+++.|++|++.|.+++|++++++.
T Consensus 5 i~iGtp~q~~~l~~DTGS~~~wv~~~~c~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~~~~~ 83 (283)
T cd05471 5 ITIGTPPQKFSVIFDTGSSLLWVPSSNCT-SCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVTIGGL 83 (283)
T ss_pred EEECCCCcEEEEEEeCCCCCEEEecCCCC-ccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEEECCE
Confidence 889999999999 99999999999987 333333333 899999999999999999999999999999999999999
Q ss_pred EeeeeEEEEEEeeccccccccccceEEecccCccccCCCCchhhhhhhcCCCCCCeEEEEecCCCCCCCCcEEEECCCCC
Q 011243 147 VVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGVDP 226 (490)
Q Consensus 147 ~v~~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~~~FSl~L~~~~~~~~~G~L~fGGiD~ 226 (490)
+++++.||++..... .......+||||||++..+.....+++++|.++|.|.+++||+||.+..+....|.|+|||+|+
T Consensus 84 ~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~ 162 (283)
T cd05471 84 TIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDP 162 (283)
T ss_pred EEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCc
Confidence 999999999998764 2445677999999998876666788999999999999999999999853234589999999999
Q ss_pred CCcccceEEEeccc--cceeEEEEceEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCC
Q 011243 227 DHYKGEHTYVPVTK--KGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 293 (490)
Q Consensus 227 ~~~~G~l~~~p~~~--~~~w~V~l~~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~ 293 (490)
.++.+++.|+|+.. ..+|.|.+++|.+++...........++||||+++++||++++++|.+++.+.
T Consensus 163 ~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~ 231 (283)
T cd05471 163 SKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAA 231 (283)
T ss_pred cccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCc
Confidence 99999999999987 78999999999999974222356789999999999999999999999999777
No 20
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=6.4e-43 Score=352.33 Aligned_cols=279 Identities=23% Similarity=0.387 Sum_probs=215.8
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCCCCcccCCCCCceeeCCeEEEEEecCce-EEEEEEEEEEEeCCe-
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDNVKVGDL- 146 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~dGs-~~G~~~~Dtv~igg~- 146 (490)
|+||||||++.| |||+++||+|.+| +.|.++|++|+ +.|.+++|+|+||+.
T Consensus 6 i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~ 61 (299)
T cd05472 6 VGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLTLGSSD 61 (299)
T ss_pred EecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEEeCCCC
Confidence 899999999999 9999999975443 57899999999 699999999999998
Q ss_pred EeeeeEEEEEEeeccccccccccceEEecccCccccCCCCchhhhhhhcCCCCCCeEEEEecCCCCCCCCcEEEECCCCC
Q 011243 147 VVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGVDP 226 (490)
Q Consensus 147 ~v~~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~~~FSl~L~~~~~~~~~G~L~fGGiD~ 226 (490)
.++++.|||+....+. + ...+||||||++..+ +..++..+ .+++||+||++.. ....|+|+|||+|+
T Consensus 62 ~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~fGg~d~ 128 (299)
T cd05472 62 VVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSFGAAAS 128 (299)
T ss_pred ccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEeCCccc
Confidence 8999999999876543 2 267999999987654 44455443 3589999998743 23489999999999
Q ss_pred CCcccceEEEecccc----ceeEEEEceEEEcCeecccc---CCCceEEEcCCCCCcccCHHHHHHHHHHhcCCcccchh
Q 011243 227 DHYKGEHTYVPVTKK----GYWQFEMGDVLIDGETTGYC---STGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQE 299 (490)
Q Consensus 227 ~~~~G~l~~~p~~~~----~~w~V~l~~i~vgg~~i~~~---~~~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~ 299 (490)
. .|++.|+|+... .+|.|.+++|+|+++.+... .....++|||||+++++|++++++|.+++.+..
T Consensus 129 ~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~----- 201 (299)
T cd05472 129 V--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAM----- 201 (299)
T ss_pred c--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHh-----
Confidence 8 999999999753 58999999999999987643 245689999999999999999999999886540
Q ss_pred hhHHHHhhhHHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCCCCCCCcccchhHHHHHHHHHHhh
Q 011243 300 CKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLR 379 (490)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (490)
..+ .. ..+
T Consensus 202 -----~~~------------~~---------------------------------~~~---------------------- 209 (299)
T cd05472 202 -----AAY------------PR---------------------------------APG---------------------- 209 (299)
T ss_pred -----ccC------------CC---------------------------------CCC----------------------
Confidence 000 00 000
Q ss_pred cchhhHHHHHhhhhhccCCCCCCCceeeeCCCCCCCCcEEEEEC-CEEEEeCcccceEeecccccceeeeeeEecccCCC
Q 011243 380 RNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIG-GKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPP 458 (490)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~l~f~f~-g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~ 458 (490)
. .....| |.++|.....+|+|+|+|+ +++++|+|++|+.+.. .....|+ .+...+ .
T Consensus 210 ------~---~~~~~C---------~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~-~~~~~C~-~~~~~~---~ 266 (299)
T cd05472 210 ------F---SILDTC---------YDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVD-DSSQVCL-AFAGTS---D 266 (299)
T ss_pred ------C---CCCCcc---------CcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEec-CCCCEEE-EEeCCC---C
Confidence 0 000012 2334444468999999997 8999999999998432 2345796 454321 2
Q ss_pred CCCeeeecHhhhcceeEEEeCCCCeEEEEEc
Q 011243 459 RGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 489 (490)
Q Consensus 459 ~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 489 (490)
.++.||||+.|||++|+|||++++|||||++
T Consensus 267 ~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~ 297 (299)
T cd05472 267 DGGLSIIGNVQQQTFRVVYDVAGGRIGFAPG 297 (299)
T ss_pred CCCCEEEchHHccceEEEEECCCCEEeEecC
Confidence 3457999999999999999999999999986
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=8.8e-40 Score=324.12 Aligned_cols=240 Identities=25% Similarity=0.438 Sum_probs=202.3
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCCCCcccCCCCCceeeCCeEEEEEecCce-EEEEEEEEEEEeCCe-
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDNVKVGDL- 146 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~dGs-~~G~~~~Dtv~igg~- 146 (490)
|+||||||++.| |||+++||++ +.+.+.|++|+ +.|.+++|+|+|++.
T Consensus 6 i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~~g~~~ 58 (265)
T cd05476 6 LSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFTFGDSS 58 (265)
T ss_pred EecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEEecCCC
Confidence 899999999999 9999999984 44788999876 899999999999998
Q ss_pred -EeeeeEEEEEEeeccccccccccceEEecccCccccCCCCchhhhhhhcCCCCCCeEEEEecCCCCCCCCcEEEECCCC
Q 011243 147 -VVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGVD 225 (490)
Q Consensus 147 -~v~~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~~~FSl~L~~~~~~~~~G~L~fGGiD 225 (490)
.++++.||+++.... +.....+||||||++..+ ++.+|..++ ++||+||.+..+....|+|+|||+|
T Consensus 59 ~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~fGg~d 126 (265)
T cd05476 59 VSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLILGDAA 126 (265)
T ss_pred CccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEEECCcc
Confidence 899999999998754 445678999999987543 677888777 7999999875333458999999999
Q ss_pred CCCcccceEEEeccc----cceeEEEEceEEEcCeeccc--------cCCCceEEEcCCCCCcccCHHHHHHHHHHhcCC
Q 011243 226 PDHYKGEHTYVPVTK----KGYWQFEMGDVLIDGETTGY--------CSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 293 (490)
Q Consensus 226 ~~~~~G~l~~~p~~~----~~~w~V~l~~i~vgg~~i~~--------~~~~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~ 293 (490)
++ +.|++.|+|+.. ..+|.|++++|+++++.+.+ ......++|||||+++++|+++
T Consensus 127 ~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~----------- 194 (265)
T cd05476 127 DL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPA----------- 194 (265)
T ss_pred cc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCccc-----------
Confidence 99 999999999975 47899999999999987742 2356789999999999999621
Q ss_pred cccchhhhHHHHhhhHHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCCCCCCCcccchhHHHHHH
Q 011243 294 GVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIW 373 (490)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (490)
T Consensus 195 -------------------------------------------------------------------------------- 194 (265)
T cd05476 195 -------------------------------------------------------------------------------- 194 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcchhhHHHHHhhhhhccCCCCCCCceeeeCCCCCCCCcEEEEEC-CEEEEeCcccceEeecccccceeeeeeEe
Q 011243 374 MQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIG-GKVFDLAPNEYVLEVGEGVAAQCISGFTA 452 (490)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~l~f~f~-g~~~~i~~~~y~~~~~~~~~~~C~~~~~~ 452 (490)
+|.|+|+|+ ++.+.+++++|+.+.. ....|.. +..
T Consensus 195 -----------------------------------------~P~i~~~f~~~~~~~i~~~~y~~~~~--~~~~C~~-~~~ 230 (265)
T cd05476 195 -----------------------------------------YPDLTLHFDGGADLELPPENYFVDVG--EGVVCLA-ILS 230 (265)
T ss_pred -----------------------------------------cCCEEEEECCCCEEEeCcccEEEECC--CCCEEEE-Eec
Confidence 179999998 8999999999998643 3468974 432
Q ss_pred cccCCCCCCeeeecHhhhcceeEEEeCCCCeEEEEEcC
Q 011243 453 FDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 490 (490)
Q Consensus 453 ~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 490 (490)
. ...+.||||++|||++|++||.+++|||||++.
T Consensus 231 ~----~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~ 264 (265)
T cd05476 231 S----SSGGVSILGNIQQQNFLVEYDLENSRLGFAPAD 264 (265)
T ss_pred C----CCCCcEEEChhhcccEEEEEECCCCEEeeecCC
Confidence 1 245689999999999999999999999999873
No 22
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2.2e-39 Score=322.75 Aligned_cols=249 Identities=22% Similarity=0.386 Sum_probs=203.9
Q ss_pred eeecCCCceEEE---eeccceeEeCC-CCCcccccCCCCcccCCCCCceeeCCeEEEEEecCce-EEEEEEEEEEEeCC-
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSA-KCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDNVKVGD- 145 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~-~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~dGs-~~G~~~~Dtv~igg- 145 (490)
|+||||||++.| |||+++||+|. .|. .| .+.|.+.|++|+ +.|.+++|+|++++
T Consensus 7 i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~v~~~~~ 66 (273)
T cd05475 7 INIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDIFSLKLT 66 (273)
T ss_pred EEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEEEEEeec
Confidence 899999999999 99999999873 564 45 367899999765 89999999999963
Q ss_pred ---eEeeeeEEEEEEeecccc-ccccccceEEecccCccccCCCCchhhhhhhcCCCCCCeEEEEecCCCCCCCCcEEEE
Q 011243 146 ---LVVKNQDFIEATKEASIT-FLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVF 221 (490)
Q Consensus 146 ---~~v~~~~FG~~~~~~~~~-~~~~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~~~FSl~L~~~~~~~~~G~L~f 221 (490)
..++++.|||+....+.. ......+||||||++..+ ++++|.++++| +++||+||.+.. .|.|+|
T Consensus 67 ~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~~----~g~l~~ 135 (273)
T cd05475 67 NGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSNG----GGFLFF 135 (273)
T ss_pred CCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCCC----CeEEEE
Confidence 577899999998654431 234567999999987543 88999999999 899999998732 689999
Q ss_pred CCCCCCCcccceEEEecccc---ceeEEEEceEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCcccch
Q 011243 222 GGVDPDHYKGEHTYVPVTKK---GYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQ 298 (490)
Q Consensus 222 GGiD~~~~~G~l~~~p~~~~---~~w~V~l~~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~ 298 (490)
| |..++.|++.|+|+... .+|.|++.+|+|+++... .....++|||||+++++|+++|
T Consensus 136 G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--~~~~~~ivDTGTt~t~lp~~~y--------------- 196 (273)
T cd05475 136 G--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--GKGLEVVFDSGSSYTYFNAQAY--------------- 196 (273)
T ss_pred C--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--CCCceEEEECCCceEEcCCccc---------------
Confidence 8 55667899999999864 799999999999998653 4567899999999999996321
Q ss_pred hhhHHHHhhhHHHHHHHHhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCCCCCCCcccchhHHHHHHHHHHh
Q 011243 299 ECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKL 378 (490)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (490)
T Consensus 197 -------------------------------------------------------------------------------- 196 (273)
T cd05475 197 -------------------------------------------------------------------------------- 196 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcchhhHHHHHhhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECC----EEEEeCcccceEeecccccceeeeeeEecc
Q 011243 379 RRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGG----KVFDLAPNEYVLEVGEGVAAQCISGFTAFD 454 (490)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~l~f~f~g----~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~ 454 (490)
+|+|+|+|++ ++++|+|++|+.+... ...|+..+...+
T Consensus 197 ------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~--~~~Cl~~~~~~~ 238 (273)
T cd05475 197 ------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEK--GNVCLGILNGSE 238 (273)
T ss_pred ------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCC--CCEEEEEecCCC
Confidence 5789999986 7999999999987543 347987765432
Q ss_pred cCCCCCCeeeecHhhhcceeEEEeCCCCeEEEEEcC
Q 011243 455 VAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 490 (490)
Q Consensus 455 ~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 490 (490)
...++.||||+.|||++|++||++++|||||++.
T Consensus 239 --~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~ 272 (273)
T cd05475 239 --IGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSD 272 (273)
T ss_pred --cCCCceEEECceEEEeeEEEEECcCCEeCcccCC
Confidence 1234689999999999999999999999999864
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=6.4e-37 Score=316.44 Aligned_cols=310 Identities=17% Similarity=0.244 Sum_probs=223.0
Q ss_pred ecCCCce---EEE-eeccceeEeCC----------CCCcccccCCCCcccCCC------CCceeeCCeEEEEE-ecCce-
Q 011243 74 MRTPVRR---YNL-HGSSNLWVPSA----------KCYFSVSCYFHSKYKSSH------SSTYKRNGTSAAIQ-YGTGA- 131 (490)
Q Consensus 74 IGTP~Q~---~~v-TGSs~~WV~s~----------~C~~~~~C~~~~~y~p~~------SsT~~~~~~~~~~~-Y~dGs- 131 (490)
+|||--+ +.+ |||+++||+|. .|. ...|..+..|++.. ++......|.+... |++|+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~-s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~ 80 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCS-SSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGEC 80 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcC-ChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcE
Confidence 4666544 444 99999999544 465 56787666665542 22232334556543 77896
Q ss_pred EEEEEEEEEEEeCC--------eEeeeeEEEEEEeeccccccccccceEEecccCccccCCCCchhhhhhhcCCCCCCeE
Q 011243 132 ISGFFSQDNVKVGD--------LVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVF 203 (490)
Q Consensus 132 ~~G~~~~Dtv~igg--------~~v~~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~~~F 203 (490)
..|.+++|+++|+. .+++++.|||+.......+ ....+||||||++..+ +..+|..++. .++.|
T Consensus 81 t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~F 152 (362)
T cd05489 81 ATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKF 152 (362)
T ss_pred eeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcce
Confidence 79999999999973 3788999999987532212 3347999999998876 5567766655 46899
Q ss_pred EEEecCCCCCCCCcEEEECCCCCCCcc------cceEEEecccc----ceeEEEEceEEEcCeecccc--------CCCc
Q 011243 204 SFWLNRDIEGEEGGEIVFGGVDPDHYK------GEHTYVPVTKK----GYWQFEMGDVLIDGETTGYC--------STGC 265 (490)
Q Consensus 204 Sl~L~~~~~~~~~G~L~fGGiD~~~~~------G~l~~~p~~~~----~~w~V~l~~i~vgg~~i~~~--------~~~~ 265 (490)
|+||.+.. ...|.|+||+.++.++. +++.|+|+... .+|.|++++|+||++.+.++ ....
T Consensus 153 S~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~ 230 (362)
T cd05489 153 ALCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPG 230 (362)
T ss_pred EEEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCC
Confidence 99998752 34799999999987774 78999999754 69999999999999987642 2345
Q ss_pred eEEEcCCCCCcccCHHHHHHHHHHhcCCcccchhhhHHHHhhhHHHHHHHHhhcCchhhhccccccccCCCCCcccceee
Q 011243 266 NAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIES 345 (490)
Q Consensus 266 ~aiiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (490)
.++|||||++++||+++|++|.+++... +..++. ..+
T Consensus 231 g~iiDSGTs~t~lp~~~y~~l~~a~~~~----------~~~~~~---------~~~------------------------ 267 (362)
T cd05489 231 GVKLSTVVPYTVLRSDIYRAFTQAFAKA----------TARIPR---------VPA------------------------ 267 (362)
T ss_pred cEEEecCCceEEECHHHHHHHHHHHHHH----------hcccCc---------CCC------------------------
Confidence 7999999999999999999999998644 000000 000
Q ss_pred eeccCCCCCCCCCCCCcccchhHHHHHHHHHHhhcchhhHHHHHhhhhhccCCCCCCCceeeeCCCCCCCCcEEEEECC-
Q 011243 346 VIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGG- 424 (490)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~p~l~f~f~g- 424 (490)
. ....++|..... ...|+....+|.|+|+|+|
T Consensus 268 --------------------------------------~----~~~~~~C~~~~~-----~~~~~~~~~~P~it~~f~g~ 300 (362)
T cd05489 268 --------------------------------------A----AVFPELCYPASA-----LGNTRLGYAVPAIDLVLDGG 300 (362)
T ss_pred --------------------------------------C----CCCcCccccCCC-----cCCcccccccceEEEEEeCC
Confidence 0 000134433211 1234334689999999975
Q ss_pred -EEEEeCcccceEeecccccceeeeeeEecccCCCCCCeeeecHhhhcceeEEEeCCCCeEEEEEc
Q 011243 425 -KVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 489 (490)
Q Consensus 425 -~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 489 (490)
++++|+|++|+++..+ ...|. +|...+. ..++.||||+.|||++|++||.+++|||||+.
T Consensus 301 g~~~~l~~~ny~~~~~~--~~~Cl-~f~~~~~--~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 301 GVNWTIFGANSMVQVKG--GVACL-AFVDGGS--EPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred CeEEEEcCCceEEEcCC--CcEEE-EEeeCCC--CCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9999999999998653 35795 6764432 12468999999999999999999999999974
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.79 E-value=9.9e-19 Score=149.68 Aligned_cols=103 Identities=52% Similarity=0.820 Sum_probs=90.4
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCCCCcc-cCCCCCceeeCCeEEEEEecCceEEEEEEEEEEEeCCeE
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYFHSKY-KSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVGDLV 147 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~~~~y-~p~~SsT~~~~~~~~~~~Y~dGs~~G~~~~Dtv~igg~~ 147 (490)
|.||||||++.| |||+++||++..|. ...|..+..| +|..|+|++..++.+.+.|++|++.|.++.|+|+||+..
T Consensus 3 i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~~~ 81 (109)
T cd05470 3 IGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGDIE 81 (109)
T ss_pred EEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECCEE
Confidence 789999999999 99999999999886 3334445556 999999999999999999999999999999999999999
Q ss_pred eeeeEEEEEEeeccccccccccceEEec
Q 011243 148 VKNQDFIEATKEASITFLAAKFDGILGL 175 (490)
Q Consensus 148 v~~~~FG~~~~~~~~~~~~~~~~GIlGL 175 (490)
++++.||+++...+..+.....+|||||
T Consensus 82 ~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 82 VVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred ECCEEEEEEEecCCccccccccccccCC
Confidence 9999999999886654455678999997
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.70 E-value=1.8e-16 Score=146.22 Aligned_cols=129 Identities=31% Similarity=0.487 Sum_probs=98.8
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCCCCcccCCCCCceee----------------------CCeEEEEE
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKR----------------------NGTSAAIQ 126 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~----------------------~~~~~~~~ 126 (490)
|.||||+|++.| |||+.+|+++ ..+.|+|.+|+|++. ..+.|.+.
T Consensus 5 ~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y~~~ 74 (164)
T PF14543_consen 5 VSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPYSQS 74 (164)
T ss_dssp EECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEEEEE
T ss_pred EEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccceee
Confidence 789999999988 9999999985 255688888888853 22589999
Q ss_pred ecCce-EEEEEEEEEEEeCC-----eEeeeeEEEEEEeeccccccccccceEEecccCccccCCCCchhhhhhhcCCCCC
Q 011243 127 YGTGA-ISGFFSQDNVKVGD-----LVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKE 200 (490)
Q Consensus 127 Y~dGs-~~G~~~~Dtv~igg-----~~v~~~~FG~~~~~~~~~~~~~~~~GIlGLG~~~~s~~~~~~~~~~L~~qG~I~~ 200 (490)
|.+++ +.|.+++|+++++. ..+.++.|||+....+. + ...+||||||+...+ ++.||.++ ..
T Consensus 75 y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~-~--~~~~GilGLg~~~~S------l~sQl~~~---~~ 142 (164)
T PF14543_consen 75 YGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL-F--YGADGILGLGRGPLS------LPSQLASS---SG 142 (164)
T ss_dssp ETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS-S--TTEEEEEE-SSSTTS------HHHHHHHH-----
T ss_pred cCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC-C--cCCCcccccCCCccc------HHHHHHHh---cC
Confidence 99988 79999999999976 56889999999987643 2 277999999988766 88899888 56
Q ss_pred CeEEEEecCCCCCCCCcEEEECC
Q 011243 201 PVFSFWLNRDIEGEEGGEIVFGG 223 (490)
Q Consensus 201 ~~FSl~L~~~~~~~~~G~L~fGG 223 (490)
+.||+||.+ ++....|.|+||+
T Consensus 143 ~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 143 NKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp SEEEEEB-S--SSSSEEEEEECS
T ss_pred CeEEEECCC-CCCCCCEEEEeCc
Confidence 899999999 3345689999995
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.69 E-value=2.5e-16 Score=144.75 Aligned_cols=153 Identities=22% Similarity=0.389 Sum_probs=102.7
Q ss_pred eeEEEEceEEEcCeeccccCC-------CceEEEcCCCCCcccCHHHHHHHHHHhcCCcccchhhhHHHHhhhHHHHHHH
Q 011243 243 YWQFEMGDVLIDGETTGYCST-------GCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEML 315 (490)
Q Consensus 243 ~w~V~l~~i~vgg~~i~~~~~-------~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (490)
+|.|++.+|+||++.+.++.. ...++|||||++++||+++|+++.+++... +...+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~----------~~~~~------- 63 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQ----------MGAPG------- 63 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHH----------HHTCT-------
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHH----------hhhcc-------
Confidence 478999999999999876543 468999999999999999999999998554 00000
Q ss_pred HhhcCchhhhccccccccCCCCCcccceeeeeccCCCCCCCCCCCCcccchhHHHHHHHHHHhhcchhhHHHHHhhhhhc
Q 011243 316 IAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVNQLC 395 (490)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (490)
.....+ ...-.++|
T Consensus 64 ---------------------------~~~~~~---------------------------------------~~~~~~~C 77 (161)
T PF14541_consen 64 ---------------------------VSREAP---------------------------------------PFSGFDLC 77 (161)
T ss_dssp -----------------------------CEE------------------------------------------TT-S-E
T ss_pred ---------------------------cccccc---------------------------------------cCCCCCce
Confidence 000000 01123455
Q ss_pred cCCCCCCCceeeeCCCCCCCCcEEEEEC-CEEEEeCcccceEeecccccceeeeeeEecccCCCCCCeeeecHhhhccee
Q 011243 396 DRLPSPNGESAVDCDNLSSMPNVSFTIG-GKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYH 474 (490)
Q Consensus 396 ~~~~~~~~~~~~~c~~~~~~p~l~f~f~-g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y 474 (490)
...+... .+ .....+|+|+|+|. |+.++++|++|+....+ ...|...... .....+..|||+.+|++++
T Consensus 78 y~~~~~~----~~-~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~--~~~Cla~~~~---~~~~~~~~viG~~~~~~~~ 147 (161)
T PF14541_consen 78 YNLSSFG----VN-RDWAKFPTITLHFEGGADLTLPPENYFVQVSP--GVFCLAFVPS---DADDDGVSVIGNFQQQNYH 147 (161)
T ss_dssp EEGGCS-----EE-TTEESS--EEEEETTSEEEEE-HHHHEEEECT--TEEEESEEEE---TSTTSSSEEE-HHHCCTEE
T ss_pred eeccccc----cc-cccccCCeEEEEEeCCcceeeeccceeeeccC--CCEEEEEEcc---CCCCCCcEEECHHHhcCcE
Confidence 4443310 01 12358999999998 79999999999998763 3689855543 1234578899999999999
Q ss_pred EEEeCCCCeEEEEE
Q 011243 475 TVFDYGNLSIGFAE 488 (490)
Q Consensus 475 ~vfD~~~~~igfa~ 488 (490)
++||++++||||+|
T Consensus 148 v~fDl~~~~igF~~ 161 (161)
T PF14541_consen 148 VVFDLENGRIGFAP 161 (161)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEECCCCEEEEeC
Confidence 99999999999997
No 27
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=98.06 E-value=2.8e-06 Score=57.53 Aligned_cols=35 Identities=51% Similarity=1.112 Sum_probs=33.7
Q ss_pred chhhhHHHHhhhHHHHHHHHhhcCchhhhcccccc
Q 011243 297 SQECKTLVDQYGKTILEMLIAETQPQKICSQMGLC 331 (490)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (490)
+++|+.++++|++.|++++.+.++|+++|..+++|
T Consensus 1 ~~~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 1 SDECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 57999999999999999999999999999999998
No 28
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=97.64 E-value=4.6e-05 Score=52.68 Aligned_cols=38 Identities=26% Similarity=0.646 Sum_probs=35.8
Q ss_pred cccchhHHHHHHHHHHhhcchhhHHHHHhhhhhccCCC
Q 011243 362 AMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLP 399 (490)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (490)
..|..|+.+|.++++.|+.|.+.++|.+.+++.|..+|
T Consensus 2 ~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 2 DECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred CcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 36999999999999999999999999999999998775
No 29
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=97.04 E-value=0.0018 Score=62.00 Aligned_cols=121 Identities=22% Similarity=0.436 Sum_probs=84.7
Q ss_pred EEcCCCCCcccCHHHHHHHHHHhcCCcccch-hhhHHHHhhhHHHHHHHHhhcCchhhhccccccccCCCCCcccceee-
Q 011243 268 IADSGTSLLAGPTTIITQINHAIGASGVISQ-ECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIES- 345 (490)
Q Consensus 268 iiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 345 (490)
.+|.. ...+++++-.. -+.+... .+ ||..++|+|+.+|++.|.+.+.|+.+|.++++|.-. -+-.+
T Consensus 52 ~~~~~--~~~i~~~l~~~-Ckkl~~~---~~~~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~------~~~~~~ 119 (218)
T KOG1340|consen 52 YLDKN--QNELKEDLHAE-CKKLPKA---IPFECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSAS------AGPVSE 119 (218)
T ss_pred hhccc--HHHHHHHHHHH-HHHhccc---chHHHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCcc------cchhhh
Confidence 44544 33444444444 5555444 23 999999999999999999999999999999999841 11111
Q ss_pred eeccCCCCCCCCCCCCcccchhHHHHHHHHHHhhc-chhhHHHHHhhhhhccCCCCCCCceeeeCCCC
Q 011243 346 VIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRR-NETADQILNYVNQLCDRLPSPNGESAVDCDNL 412 (490)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 412 (490)
+...+ -.-+.|-.|..+|......|+. +.+...+.....+-|..++. |.-.|+.+
T Consensus 120 ~~~~~--------~~~~~C~~C~~~V~~~~~~l~d~~~~k~~~~~~~~~~ck~l~~----~~~~Ck~f 175 (218)
T KOG1340|consen 120 VFASQ--------PAAGECELCRETVTEADTKLQDKPKTKGKIVSLLLKSCKSLPN----YEQKCKQF 175 (218)
T ss_pred hhhhc--------ccccccHHHHHHHHHHHHhcccchhHHHHHHHHHHhhccCCcc----chhHHHHH
Confidence 11111 1157899999999999999999 88888888888888865533 33356543
No 30
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=95.07 E-value=0.036 Score=45.22 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=54.9
Q ss_pred eeecCCCceEEE---eeccceeEeCCCCCcccccCCCCcccCCCCCceeeCCeEEEEEecCce-EEEEEEEEEEEeCCeE
Q 011243 72 ETMRTPVRRYNL---HGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDNVKVGDLV 147 (490)
Q Consensus 72 v~IGTP~Q~~~v---TGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~dGs-~~G~~~~Dtv~igg~~ 147 (490)
+.|+ ++++.+ ||++.+|+...... .+.. . ...........++|. .......+.+++|+..
T Consensus 7 v~i~--~~~~~~llDTGa~~s~i~~~~~~---~l~~--~---------~~~~~~~~~~~~~G~~~~~~~~~~~i~ig~~~ 70 (96)
T cd05483 7 VTIN--GQPVRFLLDTGASTTVISEELAE---RLGL--P---------LTLGGKVTVQTANGRVRAARVRLDSLQIGGIT 70 (96)
T ss_pred EEEC--CEEEEEEEECCCCcEEcCHHHHH---HcCC--C---------ccCCCcEEEEecCCCccceEEEcceEEECCcE
Confidence 6677 455555 99999999754221 1111 0 112233456667777 4556668999999999
Q ss_pred eeeeEEEEEEeeccccccccccceEEecc
Q 011243 148 VKNQDFIEATKEASITFLAAKFDGILGLG 176 (490)
Q Consensus 148 v~~~~FG~~~~~~~~~~~~~~~~GIlGLG 176 (490)
++++.+.++..... ..+||||+.
T Consensus 71 ~~~~~~~v~d~~~~------~~~gIlG~d 93 (96)
T cd05483 71 LRNVPAVVLPGDAL------GVDGLLGMD 93 (96)
T ss_pred EeccEEEEeCCccc------CCceEeChH
Confidence 99998887765431 458999986
No 31
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=94.49 E-value=0.052 Score=42.21 Aligned_cols=49 Identities=31% Similarity=0.788 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCcccchhhhHHHHhhhHHHHHHHHhhcCchhhhcccccc
Q 011243 281 TIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLC 331 (490)
Q Consensus 281 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (490)
+.++.+-+.++ .....+|+.+++.|++.|++.+.+...|+++|..+++|
T Consensus 28 ~~~~~~C~~~~--~~~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 28 KALEKVCKKLP--KSLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 34445555555 24678999999999999999999999999999999988
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=92.15 E-value=0.85 Score=39.83 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.9
Q ss_pred CCeeeecHhhhcceeEEEeCCCCeEE
Q 011243 460 GPLWILGDVFMGRYHTVFDYGNLSIG 485 (490)
Q Consensus 460 ~~~~iLG~~fl~~~y~vfD~~~~~ig 485 (490)
....|||..||+.+-.+.|+.+.+|-
T Consensus 98 ~~d~ILG~d~L~~~~~~ID~~~~~i~ 123 (124)
T cd05479 98 DVDFLIGLDMLKRHQCVIDLKENVLR 123 (124)
T ss_pred CcCEEecHHHHHhCCeEEECCCCEEE
Confidence 34679999999999999999999874
No 33
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=91.31 E-value=0.2 Score=38.87 Aligned_cols=37 Identities=32% Similarity=0.733 Sum_probs=35.5
Q ss_pred ccchhHHHHHHHHHHhhcchhhHHHHHhhhhhccCCC
Q 011243 363 MCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLP 399 (490)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (490)
.|..|+..|..++..+..+.+.+.|.+.+.++|..+|
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~ 38 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLP 38 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC
Confidence 5999999999999999999999999999999999887
No 34
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=89.18 E-value=0.83 Score=40.69 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=25.1
Q ss_pred CeeeecHhhhcceeEEEeCCCCeEEEEE
Q 011243 461 PLWILGDVFMGRYHTVFDYGNLSIGFAE 488 (490)
Q Consensus 461 ~~~iLG~~fl~~~y~vfD~~~~~igfa~ 488 (490)
-+.|||.++|+.+....|..+++|-|-.
T Consensus 104 ~DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 104 YDVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeeEeccchHHhCCCEEEccCCEEEEeC
Confidence 3579999999999999999999998853
No 35
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=87.92 E-value=0.32 Score=46.77 Aligned_cols=46 Identities=24% Similarity=0.607 Sum_probs=39.2
Q ss_pred HHhcCCcccchhhhHHHHhhhHHHHHHHHhhcCchhhhcccccccc
Q 011243 288 HAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTF 333 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (490)
........-.+.|+.+++.|++.|+..|...++|+++|+.++.|..
T Consensus 160 ~~ck~l~~~~~~Ck~fV~~y~p~~i~~l~~~~~p~~vC~~l~~C~~ 205 (218)
T KOG1340|consen 160 KSCKSLPNYEQKCKQFVHEYGPQLITLLEEGLDPHDVCTALGACPP 205 (218)
T ss_pred hhccCCccchhHHHHHHHHhccHHHHHHHHhhCchhHHHHhhcCCc
Confidence 3344444556779999999999999999999999999999999984
No 36
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=86.73 E-value=5.1 Score=41.40 Aligned_cols=146 Identities=19% Similarity=0.216 Sum_probs=81.8
Q ss_pred EEecCceEEEEEEEEEEEeCCeEeeeeEEEEEEeec--------------cccccccccceEEecccCccccC-------
Q 011243 125 IQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEA--------------SITFLAAKFDGILGLGFQEISIG------- 183 (490)
Q Consensus 125 ~~Y~dGs~~G~~~~Dtv~igg~~v~~~~FG~~~~~~--------------~~~~~~~~~~GIlGLG~~~~s~~------- 183 (490)
..|++|..=|.+.+-+|+||+....++.+-++.+.. .......+.+||||+|.-.....
T Consensus 82 ~~F~sgytWGsVr~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa 161 (370)
T PF11925_consen 82 AQFASGYTWGSVRTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSA 161 (370)
T ss_pred hhccCcccccceEEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhccc
Confidence 356777766788899999999777666666654320 01122456799999998543320
Q ss_pred ---------CCCc-hhhhhhhcCCCCCCeEEEEecCCC------------CCCCCcEEEECCCCCC--CcccceEEEecc
Q 011243 184 ---------KAIP-VWYNMLDQGLVKEPVFSFWLNRDI------------EGEEGGEIVFGGVDPD--HYKGEHTYVPVT 239 (490)
Q Consensus 184 ---------~~~~-~~~~L~~qG~I~~~~FSl~L~~~~------------~~~~~G~L~fGGiD~~--~~~G~l~~~p~~ 239 (490)
...+ .-..+-....+..|+..|-.+.+. .....|.|+||=--.+ ...+....++..
T Consensus 162 ~~~~YY~C~~~~sCt~t~v~~~~QV~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~~~~ 241 (370)
T PF11925_consen 162 LPGNYYSCPSGGSCTSTTVPLAQQVANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGATVLTTD 241 (370)
T ss_pred CCCceEECCCCCCeecccchhhhcccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccceEEeec
Confidence 0000 001111111244566666544331 2456899999832222 223335555555
Q ss_pred ccceeEEEEceEEEcCeeccccCCCceEEEcCCCCCcccCHH
Q 011243 240 KKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTT 281 (490)
Q Consensus 240 ~~~~w~V~l~~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~ 281 (490)
..++..- ..+|.... ...||||+.-.++|+.
T Consensus 242 ~~G~~tt-----~~~G~t~~------~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 242 SNGDFTT-----TFNGQTYS------ASFFDSGSNGYFFPDS 272 (370)
T ss_pred CCceEEE-----EecCceee------eeeEecCCceeeccCC
Confidence 5554321 33444332 3499999999999963
No 37
>PF13650 Asp_protease_2: Aspartyl protease
Probab=84.16 E-value=5.8 Score=31.49 Aligned_cols=43 Identities=26% Similarity=0.394 Sum_probs=29.7
Q ss_pred ecCce-EEEEEEEEEEEeCCeEeeeeEEEEEEeeccccccccccceEEecc
Q 011243 127 YGTGA-ISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLG 176 (490)
Q Consensus 127 Y~dGs-~~G~~~~Dtv~igg~~v~~~~FG~~~~~~~~~~~~~~~~GIlGLG 176 (490)
-.+|. .......+.+++|+..+.+..+-+... ....+||||+-
T Consensus 46 ~~~g~~~~~~~~~~~i~ig~~~~~~~~~~v~~~-------~~~~~~iLG~d 89 (90)
T PF13650_consen 46 GAGGSVTVYRGRVDSITIGGITLKNVPFLVVDL-------GDPIDGILGMD 89 (90)
T ss_pred eCCCCEEEEEEEEEEEEECCEEEEeEEEEEECC-------CCCCEEEeCCc
Confidence 34444 344566679999999998888876661 23448999974
No 38
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=79.96 E-value=9.2 Score=32.46 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.8
Q ss_pred CeeeecHhhhcceeEEEeCCCCeE
Q 011243 461 PLWILGDVFMGRYHTVFDYGNLSI 484 (490)
Q Consensus 461 ~~~iLG~~fl~~~y~vfD~~~~~i 484 (490)
+..+||..||+++-++.|+.+.++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 467999999999999999988653
No 39
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=77.40 E-value=5.9 Score=34.47 Aligned_cols=86 Identities=19% Similarity=0.317 Sum_probs=50.9
Q ss_pred eeecCCCceEEE-eeccceeEeCCCCCcccccCCCCcccCCCCCceeeCCeEEEEEecCceE-EEEEEEEEEEeCCeEee
Q 011243 72 ETMRTPVRRYNL-HGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAI-SGFFSQDNVKVGDLVVK 149 (490)
Q Consensus 72 v~IGTP~Q~~~v-TGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~~Y~dGs~-~G~~~~Dtv~igg~~v~ 149 (490)
+.|...+-.|.| ||++.+.++...-. . -+ .++.. ......+.=+.|.. .....-|.+++|+..+.
T Consensus 16 ~~InG~~~~flVDTGAs~t~is~~~A~---~---Lg-l~~~~------~~~~~~~~ta~G~~~~~~~~l~~l~iG~~~~~ 82 (121)
T TIGR02281 16 GRVNGRNVRFLVDTGATSVALNEEDAQ---R---LG-LDLNR------LGYTVTVSTANGQIKAARVTLDRVAIGGIVVN 82 (121)
T ss_pred EEECCEEEEEEEECCCCcEEcCHHHHH---H---cC-CCccc------CCceEEEEeCCCcEEEEEEEeCEEEECCEEEe
Confidence 556643444445 99999988643211 0 00 11111 12233344456664 44568899999999999
Q ss_pred eeEEEEEEeeccccccccccceEEeccc
Q 011243 150 NQDFIEATKEASITFLAAKFDGILGLGF 177 (490)
Q Consensus 150 ~~~FG~~~~~~~~~~~~~~~~GIlGLG~ 177 (490)
|..+.++..... .+|+||+.+
T Consensus 83 nv~~~v~~~~~~-------~~~LLGm~f 103 (121)
T TIGR02281 83 DVDAMVAEGGAL-------SESLLGMSF 103 (121)
T ss_pred CcEEEEeCCCcC-------CceEcCHHH
Confidence 999877743211 269999973
No 40
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=75.15 E-value=15 Score=32.24 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=23.2
Q ss_pred eEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHH
Q 011243 250 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 286 (490)
Q Consensus 250 ~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l 286 (490)
.+++||..+ .|+||||+..+.++.+..+++
T Consensus 28 ~~~ing~~v-------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV-------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE-------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE-------EEEEeCCCCccccCHHHHHHc
Confidence 467788876 699999999999999887764
No 41
>PF13650 Asp_protease_2: Aspartyl protease
Probab=74.86 E-value=3.8 Score=32.60 Aligned_cols=29 Identities=17% Similarity=0.398 Sum_probs=23.9
Q ss_pred EEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHH
Q 011243 251 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 286 (490)
Q Consensus 251 i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l 286 (490)
+.++|+++ .+++|||++.+.+++++++++
T Consensus 3 v~vng~~~-------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-------EEEEcCCCCcEEECHHHHHHc
Confidence 46666654 689999999999999888776
No 42
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=72.20 E-value=5.9 Score=30.98 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=25.2
Q ss_pred eEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHH
Q 011243 250 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 286 (490)
Q Consensus 250 ~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l 286 (490)
.+.|++..+ .+++|||++..+++.+..+.+
T Consensus 12 ~~~I~g~~~-------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQV-------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEE-------EEEEeCCCcceecCHHHHHHh
Confidence 356777665 589999999999999998887
No 43
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=66.83 E-value=7.4 Score=31.65 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=25.1
Q ss_pred eEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHH
Q 011243 250 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 286 (490)
Q Consensus 250 ~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l 286 (490)
.+.|+|+.+ .++||||++.+.++++.+.++
T Consensus 4 ~~~Ing~~i-------~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL-------KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE-------EEEEcCCcceEEeCHHHHHHh
Confidence 357777766 589999999999999888866
No 44
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=65.29 E-value=7.8 Score=33.67 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=24.6
Q ss_pred eEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHH
Q 011243 250 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 286 (490)
Q Consensus 250 ~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l 286 (490)
.+.|+|++. .++||||++.+.++.+..+++
T Consensus 15 ~~~InG~~~-------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 15 TGRVNGRNV-------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred EEEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 346777754 689999999999999888765
No 45
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=62.90 E-value=10 Score=30.39 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=23.8
Q ss_pred eEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHH
Q 011243 250 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 286 (490)
Q Consensus 250 ~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l 286 (490)
.+.++++++ .+++|||++.+.++.+..+++
T Consensus 6 ~v~i~~~~~-------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 356676554 689999999999999877765
No 46
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=58.48 E-value=11 Score=30.46 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=24.2
Q ss_pred EEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHH
Q 011243 251 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 286 (490)
Q Consensus 251 i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l 286 (490)
+.|||+.+ .+++|||++.+.++++..+.+
T Consensus 3 v~InG~~~-------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-------EEEEECCCCeEEECHHHhhhc
Confidence 56677765 579999999999999988875
No 47
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=42.69 E-value=24 Score=29.15 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.4
Q ss_pred ceEEEcCCCCCcccCHHHHHHHH
Q 011243 265 CNAIADSGTSLLAGPTTIITQIN 287 (490)
Q Consensus 265 ~~aiiDSGtt~~~lp~~~~~~l~ 287 (490)
..+.+|||++...+|...+.++-
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 46899999999999999888774
No 48
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=41.70 E-value=98 Score=26.71 Aligned_cols=82 Identities=20% Similarity=0.254 Sum_probs=46.0
Q ss_pred eeecCCCceEEE-eeccceeEeCCCCCcccccCCCCcccCCCCCceeeCCeEEE-EEecCce--EEEEEEEEEEEeCCeE
Q 011243 72 ETMRTPVRRYNL-HGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAA-IQYGTGA--ISGFFSQDNVKVGDLV 147 (490)
Q Consensus 72 v~IGTP~Q~~~v-TGSs~~WV~s~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~-~~Y~dGs--~~G~~~~Dtv~igg~~ 147 (490)
+.|+.-+.++-+ ||++.+++...-+. .+... +.... .+. .-.+.|. ..|..-.+.+.+++..
T Consensus 21 ~~Ing~~~~~LvDTGAs~s~Is~~~a~---~lgl~----~~~~~-------~~~~~~~g~g~~~~~g~~~~~~l~i~~~~ 86 (124)
T cd05479 21 VEINGVPVKAFVDSGAQMTIMSKACAE---KCGLM----RLIDK-------RFQGIAKGVGTQKILGRIHLAQVKIGNLF 86 (124)
T ss_pred EEECCEEEEEEEeCCCceEEeCHHHHH---HcCCc----cccCc-------ceEEEEecCCCcEEEeEEEEEEEEECCEE
Confidence 667743444444 99999988643221 11111 11111 111 1122222 5677778899999988
Q ss_pred eeeeEEEEEEeeccccccccccceEEecc
Q 011243 148 VKNQDFIEATKEASITFLAAKFDGILGLG 176 (490)
Q Consensus 148 v~~~~FG~~~~~~~~~~~~~~~~GIlGLG 176 (490)
.+ ..|.+.... ..++|||+-
T Consensus 87 ~~-~~~~Vl~~~--------~~d~ILG~d 106 (124)
T cd05479 87 LP-CSFTVLEDD--------DVDFLIGLD 106 (124)
T ss_pred ee-eEEEEECCC--------CcCEEecHH
Confidence 75 667655322 348999986
No 49
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=41.53 E-value=20 Score=29.33 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=20.8
Q ss_pred eEEEcCeeccccCCCceEEEcCCCCCcccCHHHH
Q 011243 250 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTII 283 (490)
Q Consensus 250 ~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~ 283 (490)
.+.+++..+ .++||||+..+.+|+..+
T Consensus 9 ~v~i~g~~i-------~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKI-------KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEE-------EEEEETTBSSEEESSGGS
T ss_pred EEeECCEEE-------EEEEecCCCcceeccccc
Confidence 356666655 689999999999998543
No 50
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=40.14 E-value=85 Score=29.95 Aligned_cols=49 Identities=24% Similarity=0.342 Sum_probs=31.6
Q ss_pred CCcEEEEECCEEEEeCcccceEeecccccceeeeeeEecccCCCCCCeeeecHhhhcceeEEEeCCCCeEEE
Q 011243 415 MPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGF 486 (490)
Q Consensus 415 ~p~l~f~f~g~~~~i~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igf 486 (490)
.+.+.+.+++..|.+| .++ . ...+-+.+||.+|+|.+.=-...+ .+|-|
T Consensus 67 ~~~~~i~I~~~~F~IP--------------~iY-q-------~~~g~d~IlG~NF~r~y~Pfiq~~-~~I~f 115 (201)
T PF02160_consen 67 AKNGKIQIADKIFRIP--------------TIY-Q-------QESGIDIILGNNFLRLYEPFIQTE-DRIQF 115 (201)
T ss_pred ecCceEEEccEEEecc--------------EEE-E-------ecCCCCEEecchHHHhcCCcEEEc-cEEEE
Confidence 4577777788777775 122 0 013457899999999887665554 34554
No 51
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.44 E-value=26 Score=29.28 Aligned_cols=8 Identities=25% Similarity=0.276 Sum_probs=4.1
Q ss_pred ccchhhHH
Q 011243 17 MGTKFTAI 24 (490)
Q Consensus 17 m~~~~~l~ 24 (490)
|+.|.+++
T Consensus 1 MaSK~~ll 8 (95)
T PF07172_consen 1 MASKAFLL 8 (95)
T ss_pred CchhHHHH
Confidence 56555444
No 52
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=33.73 E-value=26 Score=30.72 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=19.3
Q ss_pred eEEEcCCCC-CcccCHHHHHHHHH
Q 011243 266 NAIADSGTS-LLAGPTTIITQINH 288 (490)
Q Consensus 266 ~aiiDSGtt-~~~lp~~~~~~l~~ 288 (490)
..+||||.+ ++.+|.++++++..
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~~~ 51 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKLGL 51 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhcCC
Confidence 459999999 99999998887643
No 53
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=29.56 E-value=84 Score=30.10 Aligned_cols=52 Identities=25% Similarity=0.378 Sum_probs=36.3
Q ss_pred CCeEEEEEecCceE-EEEEEEEEEEeCCeEeeeeEEEEEEeeccccccccccceEEeccc
Q 011243 119 NGTSAAIQYGTGAI-SGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGF 177 (490)
Q Consensus 119 ~~~~~~~~Y~dGs~-~G~~~~Dtv~igg~~v~~~~FG~~~~~~~~~~~~~~~~GIlGLG~ 177 (490)
.+.++.+.-++|.. .-.+-.|.|.||++.+.|+.-.++....- ..-++||.+
T Consensus 145 l~y~~~v~TANG~~~AA~V~Ld~v~IG~I~~~nV~A~V~~~g~L-------~~sLLGMSf 197 (215)
T COG3577 145 LDYTITVSTANGRARAAPVTLDRVQIGGIRVKNVDAMVAEDGAL-------DESLLGMSF 197 (215)
T ss_pred cCCceEEEccCCccccceEEeeeEEEccEEEcCchhheecCCcc-------chhhhhHHH
Confidence 44567777788885 44677899999999999887666643321 135677764
No 54
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=27.34 E-value=75 Score=30.40 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=25.5
Q ss_pred eEEEcCeeccccCCCceEEEcCCCCCcccCHHHHHHH
Q 011243 250 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 286 (490)
Q Consensus 250 ~i~vgg~~i~~~~~~~~aiiDSGtt~~~lp~~~~~~l 286 (490)
...|||+.+. .+||||.|.+.++++...++
T Consensus 109 ~~~VNGk~v~-------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 109 NGRVNGKKVD-------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred EEEECCEEEE-------EEEecCcceeecCHHHHHHh
Confidence 5688888874 79999999999999887765
No 55
>PRK02710 plastocyanin; Provisional
Probab=24.87 E-value=2.1e+02 Score=24.58 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=10.8
Q ss_pred CceEEE-eeccceeEe
Q 011243 78 VRRYNL-HGSSNLWVP 92 (490)
Q Consensus 78 ~Q~~~v-TGSs~~WV~ 92 (490)
|..+.+ .|....|+.
T Consensus 46 P~~i~v~~Gd~V~~~N 61 (119)
T PRK02710 46 PSTLTIKAGDTVKWVN 61 (119)
T ss_pred CCEEEEcCCCEEEEEE
Confidence 566777 777778875
No 56
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=20.09 E-value=2.4e+02 Score=29.34 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=28.5
Q ss_pred eeeeeEecccCCCCCCeeeecHhhhcceeEEEeCCCCeEEEE
Q 011243 446 CISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFA 487 (490)
Q Consensus 446 C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa 487 (490)
|-+.+.. .......||-..||++--..|++++++=|+
T Consensus 308 c~ftV~d-----~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig 344 (380)
T KOG0012|consen 308 CSFTVLD-----RRDMDLLLGLDMLRRHQCCIDLKTNVLRIG 344 (380)
T ss_pred cceEEec-----CCCcchhhhHHHHHhccceeecccCeEEec
Confidence 6655542 234577899999999999999999987665
Done!