Query 011244
Match_columns 490
No_of_seqs 346 out of 1243
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 23:12:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02125 PA_VSR PA_VSR: Proteas 100.0 4.8E-28 1E-32 216.5 14.7 127 48-175 1-127 (127)
2 cd02122 PA_GRAIL_like PA _GRAI 99.9 1.5E-21 3.3E-26 177.0 14.2 117 45-175 18-138 (138)
3 cd02126 PA_EDEM3_like PA_EDEM3 99.9 1.3E-21 2.8E-26 174.8 13.6 117 45-175 3-126 (126)
4 cd02123 PA_C_RZF_like PA_C-RZF 99.9 2.1E-21 4.5E-26 179.1 15.3 121 40-170 22-142 (153)
5 cd02127 PA_hPAP21_like PA_hPAP 99.9 2.5E-21 5.4E-26 171.1 14.2 114 48-176 1-117 (118)
6 cd02132 PA_GO-like PA_GO-like: 99.9 1E-20 2.3E-25 171.8 14.6 121 39-175 16-139 (139)
7 cd04813 PA_1 PA_1: Protease-as 99.8 3.7E-19 8E-24 157.0 11.4 105 45-167 6-111 (117)
8 cd04816 PA_SaNapH_like PA_SaNa 99.8 7.6E-18 1.7E-22 149.4 14.0 115 48-175 7-122 (122)
9 cd02129 PA_hSPPL_like PA_hSPPL 99.8 4.4E-18 9.5E-23 150.4 11.4 93 66-174 27-119 (120)
10 cd02130 PA_ScAPY_like PA_ScAPY 99.7 4.1E-17 8.9E-22 144.7 13.9 109 49-175 14-122 (122)
11 cd04818 PA_subtilisin_1 PA_sub 99.7 9E-17 2E-21 141.5 13.9 113 46-175 2-118 (118)
12 KOG3920 Uncharacterized conser 99.7 7.5E-17 1.6E-21 145.5 4.7 160 1-175 1-171 (193)
13 cd02124 PA_PoS1_like PA_PoS1_l 99.6 9.4E-16 2E-20 137.6 11.6 91 67-175 39-129 (129)
14 cd04817 PA_VapT_like PA_VapT_l 99.6 3.3E-15 7.3E-20 135.4 13.0 105 48-171 26-137 (139)
15 KOG4628 Predicted E3 ubiquitin 99.6 2.3E-14 4.9E-19 146.3 13.3 116 41-169 35-151 (348)
16 PF02225 PA: PA domain; Inter 99.5 3.3E-14 7.1E-19 120.7 7.0 98 54-165 2-101 (101)
17 cd00538 PA PA: Protease-associ 99.5 1.7E-13 3.6E-18 120.6 11.1 99 67-175 28-126 (126)
18 KOG2442 Uncharacterized conser 99.4 1.4E-12 3.1E-17 136.0 11.5 138 32-185 41-184 (541)
19 cd02133 PA_C5a_like PA_C5a_lik 99.4 8.6E-12 1.9E-16 113.7 14.0 106 47-175 15-120 (143)
20 cd04819 PA_2 PA_2: Protease-as 99.3 1.8E-11 3.8E-16 109.6 13.5 104 56-174 21-126 (127)
21 cd04815 PA_M28_2 PA_M28_2: Pro 99.2 2.9E-11 6.4E-16 109.2 8.8 103 55-175 14-134 (134)
22 cd02120 PA_subtilisin_like PA_ 99.0 1E-09 2.3E-14 97.1 10.0 85 68-170 36-121 (126)
23 PF02128 Peptidase_M36: Fungal 99.0 8.6E-11 1.9E-15 121.5 -0.8 144 189-362 192-359 (378)
24 cd02128 PA_TfR PA_TfR: Proteas 98.9 1.2E-08 2.6E-13 96.6 10.1 123 48-179 19-164 (183)
25 PF07645 EGF_CA: Calcium-bindi 98.7 1.2E-08 2.6E-13 73.8 2.5 41 411-452 1-42 (42)
26 cd02121 PA_GCPII_like PA_GCPII 98.3 3E-06 6.4E-11 82.8 10.0 124 56-193 43-207 (220)
27 cd04822 PA_M28_1_3 PA_M28_1_3: 98.2 6E-06 1.3E-10 76.2 8.3 96 56-166 18-133 (151)
28 cd04814 PA_M28_1 PA_M28_1: Pro 98.1 7.1E-06 1.5E-10 74.9 7.9 70 46-124 11-100 (142)
29 cd02131 PA_hNAALADL2_like PA_h 98.1 9.4E-06 2E-10 74.5 7.1 105 55-166 12-138 (153)
30 cd04820 PA_M28_1_1 PA_M28_1_1: 98.0 1.6E-05 3.4E-10 72.3 7.5 63 56-124 20-96 (137)
31 smart00179 EGF_CA Calcium-bind 97.5 6.8E-05 1.5E-09 52.2 2.3 38 411-452 1-38 (39)
32 PF14670 FXa_inhibition: Coagu 97.2 0.00022 4.7E-09 50.0 2.0 26 427-452 11-36 (36)
33 cd01475 vWA_Matrilin VWA_Matri 96.3 0.0025 5.5E-08 62.0 2.8 46 402-451 179-224 (224)
34 PF12662 cEGF: Complement Clr- 96.1 0.0029 6.2E-08 40.4 1.4 22 434-455 1-22 (24)
35 PF12947 EGF_3: EGF domain; I 96.0 0.0047 1E-07 43.3 2.2 31 419-452 6-36 (36)
36 cd00054 EGF_CA Calcium-binding 96.0 0.0045 9.7E-08 42.2 2.1 34 411-445 1-34 (38)
37 KOG1214 Nidogen and related ba 96.0 0.0056 1.2E-07 68.6 3.8 52 402-456 726-778 (1289)
38 KOG4260 Uncharacterized conser 95.7 0.0052 1.1E-07 61.2 1.8 44 401-446 227-270 (350)
39 cd03023 DsbA_Com1_like DsbA fa 95.5 0.039 8.5E-07 49.1 6.8 86 298-394 68-153 (154)
40 KOG1214 Nidogen and related ba 95.0 0.012 2.6E-07 66.2 1.9 42 411-456 826-867 (1289)
41 KOG1219 Uncharacterized conser 94.2 0.031 6.7E-07 68.6 3.0 32 412-445 3942-3973(4289)
42 smart00181 EGF Epidermal growt 94.2 0.034 7.3E-07 37.7 2.1 25 420-446 7-31 (35)
43 cd00053 EGF Epidermal growth f 94.0 0.041 8.9E-07 36.6 2.2 22 425-446 11-32 (36)
44 cd04821 PA_M28_1_2 PA_M28_1_2: 92.8 0.15 3.2E-06 47.6 4.4 38 86-123 46-102 (157)
45 PF13462 Thioredoxin_4: Thiore 90.8 4.5 9.7E-05 36.3 11.9 84 298-394 77-160 (162)
46 PF12955 DUF3844: Domain of un 89.9 0.75 1.6E-05 39.9 5.5 59 411-471 4-77 (103)
47 cd03024 DsbA_FrnE DsbA family, 87.5 1 2.2E-05 42.5 5.3 68 319-393 131-199 (201)
48 cd03022 DsbA_HCCA_Iso DsbA fam 86.5 0.87 1.9E-05 42.4 4.2 63 322-391 126-188 (192)
49 PF12946 EGF_MSP1_1: MSP1 EGF 86.3 0.49 1.1E-05 33.4 1.8 27 425-453 10-37 (37)
50 PF00008 EGF: EGF-like domain 85.3 0.56 1.2E-05 31.7 1.7 24 420-444 5-29 (32)
51 cd03019 DsbA_DsbA DsbA family, 84.4 1.4 2.9E-05 40.5 4.4 60 319-385 99-158 (178)
52 PF01323 DSBA: DSBA-like thior 79.8 2.1 4.5E-05 39.8 3.8 68 319-393 123-191 (193)
53 PF04639 Baculo_E56: Baculovir 77.3 3.4 7.3E-05 41.9 4.5 22 389-410 192-213 (305)
54 PTZ00382 Variant-specific surf 76.3 0.99 2.1E-05 38.6 0.5 18 438-457 41-58 (96)
55 PHA03099 epidermal growth fact 71.7 8.1 0.00017 34.8 5.0 47 401-447 27-79 (139)
56 PRK10954 periplasmic protein d 68.7 3.5 7.7E-05 39.6 2.4 75 298-383 106-180 (207)
57 KOG4289 Cadherin EGF LAG seven 64.3 7.3 0.00016 47.3 4.1 36 406-444 1234-1269(2531)
58 KOG2195 Transferrin receptor a 56.4 12 0.00027 42.8 4.2 70 48-123 148-218 (702)
59 PF14283 DUF4366: Domain of un 55.8 11 0.00024 37.1 3.2 17 471-487 167-183 (218)
60 KOG3160 Gamma-interferon induc 54.3 15 0.00033 36.2 3.9 83 309-400 126-208 (220)
61 KOG4260 Uncharacterized conser 51.9 4.8 0.0001 40.7 -0.0 45 411-457 270-315 (350)
62 PF05337 CSF-1: Macrophage col 49.3 5.6 0.00012 40.2 0.0 18 473-490 237-254 (285)
63 PTZ00214 high cysteine membran 36.0 5.4 0.00012 46.4 -2.8 49 434-484 750-800 (800)
64 PF06247 Plasmod_Pvs28: Plasmo 34.4 17 0.00036 35.0 0.7 29 426-454 142-170 (197)
65 PF13192 Thioredoxin_3: Thiore 33.2 28 0.00061 27.7 1.8 24 367-390 46-71 (76)
66 cd03025 DsbA_FrnE_like DsbA fa 33.1 39 0.00084 31.3 2.9 56 321-383 127-182 (193)
67 TIGR02196 GlrX_YruB Glutaredox 33.0 95 0.0021 23.2 4.7 25 368-393 48-72 (74)
68 KOG3653 Transforming growth fa 31.5 30 0.00065 37.9 2.1 54 434-487 115-181 (534)
69 KOG4289 Cadherin EGF LAG seven 31.1 25 0.00054 43.1 1.5 20 425-444 1512-1531(2531)
70 PF06247 Plasmod_Pvs28: Plasmo 30.3 37 0.00079 32.7 2.2 27 429-456 14-40 (197)
71 TIGR00411 redox_disulf_1 small 30.2 56 0.0012 25.5 3.0 26 368-393 51-77 (82)
72 cd04727 pdxS PdxS is a subunit 28.4 1E+02 0.0022 31.6 5.1 67 101-170 16-89 (283)
73 KOG1217 Fibrillins and related 27.7 33 0.00072 35.9 1.7 40 405-447 266-305 (487)
74 KOG1217 Fibrillins and related 26.1 48 0.0011 34.6 2.5 37 412-449 169-206 (487)
75 COG1786 Swiveling domain assoc 24.9 4.9E+02 0.011 23.7 8.1 72 87-174 48-122 (131)
76 TIGR00343 pyridoxal 5'-phospha 24.5 70 0.0015 32.8 3.2 54 101-157 18-77 (287)
77 TIGR01433 CyoA cytochrome o ub 24.0 85 0.0018 31.0 3.6 31 459-489 29-60 (226)
78 KOG4431 Uncharacterized protei 23.7 18 0.0004 31.2 -0.9 22 468-489 32-53 (100)
79 PHA03050 glutaredoxin; Provisi 23.6 1.6E+02 0.0036 25.4 5.0 55 322-384 29-83 (108)
80 TIGR02194 GlrX_NrdH Glutaredox 23.1 2E+02 0.0044 22.2 5.1 54 323-391 16-69 (72)
81 KOG1226 Integrin beta subunit 23.0 34 0.00074 39.3 0.7 37 415-457 557-593 (783)
82 COG0695 GrxC Glutaredoxin and 22.3 2.2E+02 0.0048 23.0 5.2 56 322-389 17-72 (80)
83 COG1651 DsbG Protein-disulfide 22.1 1.7E+02 0.0036 28.4 5.3 28 367-394 212-239 (244)
84 PF15176 LRR19-TM: Leucine-ric 21.7 33 0.00071 29.7 0.2 19 470-488 30-48 (102)
85 PF01299 Lamp: Lysosome-associ 21.7 79 0.0017 32.4 3.0 21 469-489 280-300 (306)
86 CHL00020 psbN photosystem II p 21.1 1E+02 0.0022 22.7 2.5 17 469-485 9-25 (43)
87 PF01826 TIL: Trypsin Inhibito 21.0 67 0.0015 23.9 1.8 19 437-456 35-53 (55)
88 PRK13183 psbN photosystem II r 20.8 1E+02 0.0023 22.9 2.6 12 474-485 17-28 (46)
89 cd03027 GRX_DEP Glutaredoxin ( 20.8 2.1E+02 0.0045 22.2 4.7 48 322-383 17-64 (73)
90 KOG3514 Neurexin III-alpha [Si 20.4 43 0.00094 39.9 0.8 89 347-452 551-658 (1591)
91 PHA03049 IMV membrane protein; 20.2 52 0.0011 26.3 1.0 20 466-485 5-24 (68)
92 PF13605 DUF4141: Domain of un 20.0 1.1E+02 0.0023 23.7 2.6 22 6-27 4-26 (55)
No 1
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.95 E-value=4.8e-28 Score=216.47 Aligned_cols=127 Identities=62% Similarity=1.063 Sum_probs=107.7
Q ss_pred ccCCCCCCCceEEEEeccCCCccCCCCCCCCCccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCc
Q 011244 48 NFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPL 127 (490)
Q Consensus 48 ~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~nn~~~~l 127 (490)
|||.|+||++++|.|++++++.+||++++....+.+.++...++|+||+||+|+|.+|++|||++||++|||+|+.++++
T Consensus 1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~ 80 (127)
T cd02125 1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPL 80 (127)
T ss_pred CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence 79999999999999999988999999997642233223457899999999999999999999999999999999988878
Q ss_pred eecCCCCCccccccccCCcceeEEEEehhhHHHHHHHHhCCCeEEEEE
Q 011244 128 ITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (490)
Q Consensus 128 ~tM~~p~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (490)
++|..|+++. ..++..+++||+++|++++|+.|++.|++|..|+++|
T Consensus 81 ~~m~~~~~~~-~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~ 127 (127)
T cd02125 81 LTMDTPEESG-SADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL 127 (127)
T ss_pred ccccCccccc-ccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence 8887655421 1134567899999999999999999999999998875
No 2
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.87 E-value=1.5e-21 Score=176.98 Aligned_cols=117 Identities=25% Similarity=0.374 Sum_probs=96.8
Q ss_pred eecccCCCCCCCceEEEEec--cCCCccCCCCCCCCCccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeC
Q 011244 45 AIGNFGVPQYGGTLIGTVVY--PKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADD 122 (490)
Q Consensus 45 ~~A~FG~~~yg~~l~G~lv~--~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~nn 122 (490)
.+|+||.+.++..+.|.|++ +.++.+||+++++.. ..+.+.++|+||+||+|+|.+|++|||++||++|||||+
T Consensus 18 ~~a~fg~~~~~~~~~G~l~~~~~~~~~~gC~~~~~~~----~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~ 93 (138)
T cd02122 18 ESGRYGEHSPKEEAKGLVVVPDPPNDHYGCDPDTRFP----IPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNN 93 (138)
T ss_pred cccccCCCCCCCccEEEEecCCCCCCcCCCCCCcccc----CCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEEC
Confidence 37999999999999999764 455789999987620 014567999999999999999999999999999999999
Q ss_pred CC--CCceecCCCCCccccccccCCcceeEEEEehhhHHHHHHHHhCCCeEEEEE
Q 011244 123 KT--EPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (490)
Q Consensus 123 ~~--~~l~tM~~p~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (490)
.+ +.++.|..++ ...||+++|++.+|+.|++++++|.+|++++
T Consensus 94 ~~~~~~~~~m~~~~----------~~~ip~v~Is~~~G~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 94 PGTGNETVKMSHPG----------TGDIVAIMITNPKGMEILELLERGISVTMVI 138 (138)
T ss_pred CCCCCceeeccCCC----------CCcceEEEEcHHHHHHHHHHHHcCCcEEEeC
Confidence 85 3356774221 3478999999999999999999999888763
No 3
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.87 E-value=1.3e-21 Score=174.83 Aligned_cols=117 Identities=24% Similarity=0.402 Sum_probs=95.1
Q ss_pred eecccCCCCCCC-ceEEEEeccCCCccCCCCCCCCCccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCC
Q 011244 45 AIGNFGVPQYGG-TLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDK 123 (490)
Q Consensus 45 ~~A~FG~~~yg~-~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~nn~ 123 (490)
.+|.||.+.+.. .+.|.|+.+ +|.+||++.+++ ..++++|+||+||+|+|.+|+++||++||+||||+||.
T Consensus 3 ~pa~FG~~~~~~~~~~g~l~~~-~p~~gC~~~~~~-------~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~ 74 (126)
T cd02126 3 GPAQFGMDLTGDKAGVGRVVKA-KPYRACSEITNA-------EEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNN 74 (126)
T ss_pred CCcccCCcCCCCCCceEEEEeC-CchhcccCCCCc-------cccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECC
Confidence 578999888754 689998874 578999988753 24679999999999999999999999999999999987
Q ss_pred CCC------ceecCCCCCccccccccCCcceeEEEEehhhHHHHHHHHhCCCeEEEEE
Q 011244 124 TEP------LITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (490)
Q Consensus 124 ~~~------l~tM~~p~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (490)
+++ ++.|....+ ....++||+++|++.+|+.|+++|+++.+|++.|
T Consensus 75 ~~~~~~~~~~~~m~~~~~------~~~~~~IP~v~I~~~dG~~L~~~l~~~~~~~~~~ 126 (126)
T cd02126 75 EGSSSDTAPMFAMSGDGD------STDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVLL 126 (126)
T ss_pred CCccccccceeEeecCCC------CCCCCeEEEEEEEHHHHHHHHHHHHhCCceEEeC
Confidence 652 455632110 1236899999999999999999999998888754
No 4
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.87 E-value=2.1e-21 Score=179.11 Aligned_cols=121 Identities=29% Similarity=0.450 Sum_probs=101.2
Q ss_pred ceeeeeecccCCCCCCCceEEEEeccCCCccCCCCCCCCCccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEE
Q 011244 40 GVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILV 119 (490)
Q Consensus 40 g~y~~~~A~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII 119 (490)
..++...|+||.+++++.++|.|++ .+|.+||++++++. . ..+...++|+||+||+|+|.+|++|||++||++|||
T Consensus 22 ~~~~~~~A~FG~~~~~~~~~g~lv~-~~p~~gC~~~~~~~--~-~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII 97 (153)
T cd02123 22 DEFDDLPANFGPIPPGSGLKGVLVV-AEPLNACSPIENPP--L-NSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIV 97 (153)
T ss_pred ceEeeecccCCCCCCCCceEEEEEe-CCccccCCCCcccc--c-ccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEE
Confidence 4688889999999999999999876 46789999987531 1 113567999999999999999999999999999999
Q ss_pred EeCCCCCceecCCCCCccccccccCCcceeEEEEehhhHHHHHHHHhCCCe
Q 011244 120 ADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEM 170 (490)
Q Consensus 120 ~nn~~~~l~tM~~p~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~ 170 (490)
+|+.++++..|...+. ...+++||+++|++++|+.|++.++.++.
T Consensus 98 ~n~~~~~~~~m~~~~~------~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 98 YNDESNDLISMSGNDQ------EIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred EECCCCcceeccCCCC------CCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 9998777777752221 12478999999999999999999998876
No 5
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.87 E-value=2.5e-21 Score=171.12 Aligned_cols=114 Identities=25% Similarity=0.327 Sum_probs=93.0
Q ss_pred ccCCCCCCCceEEEEeccCCCccCCCCCCCCCccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCC--
Q 011244 48 NFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTE-- 125 (490)
Q Consensus 48 ~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~nn~~~-- 125 (490)
.||.+..+....|.|+. .+|.+||++..+. +.++++|+||+||+|+|.+|++|||++||+||||||+.++
T Consensus 1 ~~~~~~~~~~~~~~lv~-~~p~~gC~~~~~~-------~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~ 72 (118)
T cd02127 1 DFGTIFNTRYKHVPLVP-ADPLEACEELRNI-------HDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSD 72 (118)
T ss_pred CCCccccccccceEEEE-CCccccCCCCCCc-------cccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence 48887777777787765 5678999987653 3567999999999999999999999999999999998754
Q ss_pred -CceecCCCCCccccccccCCcceeEEEEehhhHHHHHHHHhCCCeEEEEEE
Q 011244 126 -PLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLD 176 (490)
Q Consensus 126 -~l~tM~~p~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l~ 176 (490)
..+.|... +...+++||+++|++++|+.|++.+++|.+|++.+.
T Consensus 73 ~~~~~m~~~-------~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 73 EYYVEMIQD-------DSSRRADIPAAFLLGKNGYMIRKTLERLGLPYAIIN 117 (118)
T ss_pred ccceEecCC-------CCCCCceEEEEEecHHHHHHHHHHHHcCCceEEeee
Confidence 34567522 113578999999999999999999999998877653
No 6
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.85 E-value=1e-20 Score=171.77 Aligned_cols=121 Identities=31% Similarity=0.426 Sum_probs=97.8
Q ss_pred cceeeeeecccCCCCCC---CceEEEEeccCCCccCCCCCCCCCccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCc
Q 011244 39 KGVYECAIGNFGVPQYG---GTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAA 115 (490)
Q Consensus 39 ~g~y~~~~A~FG~~~yg---~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~ 115 (490)
...|...+|.||...+. +.+.+.++. .++.+||+++++ .++++|+||+||+|+|.+|++|||++||+
T Consensus 16 ~~~~~~~~a~FG~~~p~~~~~~~~~~lv~-~~~~~gC~~~~~---------~~~g~IvLV~RG~C~F~~K~~nA~~aGA~ 85 (139)
T cd02132 16 GDELVGVTARFGASLPSKEDNANKTRAVL-ANPLDCCSPSTS---------KLSGSIALVERGECAFTEKAKIAEAGGAS 85 (139)
T ss_pred ccEEEeeccccCCCCCCcccCccEEEEEE-CCcccccCCCCc---------ccCCeEEEEECCCCCHHHHHHHHHHcCCc
Confidence 45789999999976654 357888765 457899999863 35799999999999999999999999999
Q ss_pred EEEEEeCCCCCceecCCCCCccccccccCCcceeEEEEehhhHHHHHHHHhCCCeEEEEE
Q 011244 116 AILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (490)
Q Consensus 116 aVII~nn~~~~l~tM~~p~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (490)
+|||||+.++ +..|....+ +...+++||+++|++++|+.|+++|++|..|++++
T Consensus 86 avIv~n~~~~-~~~~~~~~~-----~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~Vtv~~ 139 (139)
T cd02132 86 ALLIINDQEE-LYKMVCEDN-----DTSLNISIPVVMIPQSAGDALNKSLDQGKKVEVLL 139 (139)
T ss_pred EEEEEECCCc-ccccccCCC-----CCCCCCcEeEEEecHHHHHHHHHHHHcCCcEEEeC
Confidence 9999998754 456642222 12336899999999999999999999999888763
No 7
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.80 E-value=3.7e-19 Score=157.04 Aligned_cols=105 Identities=29% Similarity=0.326 Sum_probs=84.4
Q ss_pred eecccCCCCCCCceEEEEeccCCCccCCCCCCCCCccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCC
Q 011244 45 AIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKT 124 (490)
Q Consensus 45 ~~A~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~nn~~ 124 (490)
..|.||++. ...+++.. ..+|.+||++++. +.++++|+||+||+|+|.+|++|||++||++|||+|+.+
T Consensus 6 ~~~~~~~~~-~~~~~~~~--~~~p~~gC~~~~~--------~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~ 74 (117)
T cd04813 6 RYASFSPIL-NPHLRGSY--KVSPTDACSLQEH--------AEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEP 74 (117)
T ss_pred cccccCCcc-Cccccccc--cCCCCCCCCCCCc--------CCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 357899654 55677764 3678899998843 356899999999999999999999999999999999876
Q ss_pred C-CceecCCCCCccccccccCCcceeEEEEehhhHHHHHHHHhC
Q 011244 125 E-PLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSG 167 (490)
Q Consensus 125 ~-~l~tM~~p~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~ 167 (490)
+ .+++|..+++ ...++||+++|++++|+.|+.++.+
T Consensus 75 ~~~~~~m~~~~~-------~~~v~IPav~Is~~~g~~L~~l~~~ 111 (117)
T cd04813 75 GRGLITMFSNGD-------TDNVTIPAMFTSRTSYHLLSSLLPK 111 (117)
T ss_pred cccceecccCCC-------CCCcEEEEEEEcHHHHHHHHHhccc
Confidence 4 4567753322 3578999999999999999988754
No 8
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.76 E-value=7.6e-18 Score=149.44 Aligned_cols=115 Identities=21% Similarity=0.332 Sum_probs=88.9
Q ss_pred ccCCCCCCCceEEEEeccCC-CccCCCCCCCCCccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCC
Q 011244 48 NFGVPQYGGTLIGTVVYPKA-NQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP 126 (490)
Q Consensus 48 ~FG~~~yg~~l~G~lv~~~~-~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~nn~~~~ 126 (490)
.|++....+.++|+|++... ..+||++.+... +.++++|+|++||+|+|.+|++|||++||++|||+|+.++.
T Consensus 7 ~~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~~------~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~ 80 (122)
T cd04816 7 SYSPSTPPGGVTAPLVPLDPERPAGCDASDYDG------LDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGG 80 (122)
T ss_pred eccCCCCCCCcEEEEEEcCCCCccCCCccccCC------CCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCc
Confidence 46655556779999998543 358999875432 35689999999999999999999999999999999987643
Q ss_pred ceecCCCCCccccccccCCcceeEEEEehhhHHHHHHHHhCCCeEEEEE
Q 011244 127 LITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (490)
Q Consensus 127 l~tM~~p~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (490)
...+....+ ...++||+++|++++|+.|++++++|.+|++++
T Consensus 81 ~~~~~~~~~-------~~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~~ 122 (122)
T cd04816 81 GTAGTLGAP-------NIDLKVPVGVITKAAGAALRRRLGAGETLELDA 122 (122)
T ss_pred cccccccCC-------CCCCeeeEEEEcHHHHHHHHHHHcCCCEEEEeC
Confidence 322110010 135789999999999999999999998877753
No 9
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.76 E-value=4.4e-18 Score=150.40 Aligned_cols=93 Identities=25% Similarity=0.273 Sum_probs=73.0
Q ss_pred CCCccCCCCCCCCCccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCCccccccccCC
Q 011244 66 KANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQN 145 (490)
Q Consensus 66 ~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~nn~~~~l~tM~~p~d~~~~~~~~~~ 145 (490)
.+|..||++.+... ..++++|+||+||+|+|.+|++|||++||+||||+||.+.. .+ .+. .+...+
T Consensus 27 ~~~~~gC~~~~~~~------~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~--~~---~~~---~~~~~~ 92 (120)
T cd02129 27 LTSSVLCSASDVPP------GGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLV--PP---SGN---RSEYEK 92 (120)
T ss_pred CCCcCCCCccccCc------cccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCC--CC---CCC---CCCCcC
Confidence 46789999876531 35679999999999999999999999999999999987532 11 110 011257
Q ss_pred cceeEEEEehhhHHHHHHHHhCCCeEEEE
Q 011244 146 ITIPSALISKSLGDSIKKSLSGGEMVNMN 174 (490)
Q Consensus 146 i~IPsv~Isk~~G~~L~~~l~~g~~V~v~ 174 (490)
++||++||++++|+.|++.+.++ |+|.
T Consensus 93 v~IP~v~Is~~dG~~i~~~l~~~--~~v~ 119 (120)
T cd02129 93 IDIPVALLSYKDMLDIQQTFGDS--VKVA 119 (120)
T ss_pred CcccEEEEeHHHHHHHHHHhccC--cEEe
Confidence 89999999999999999999755 5544
No 10
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.73 E-value=4.1e-17 Score=144.69 Aligned_cols=109 Identities=25% Similarity=0.330 Sum_probs=84.7
Q ss_pred cCCCCCCCceEEEEeccCCCccCCCCCCCCCccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCce
Q 011244 49 FGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLI 128 (490)
Q Consensus 49 FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~nn~~~~l~ 128 (490)
|+..++ +..+|+|++. +.+||++.+.+ .+++++|+||+||+|+|.+|++|||++||++|||||+..+...
T Consensus 14 ~~~~~~-~~~~g~lv~~--~~~gC~~~~~~-------~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~ 83 (122)
T cd02130 14 FTYSPA-GEVTGPLVVV--PNLGCDAADYP-------ASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGL 83 (122)
T ss_pred cccCCC-CCcEEEEEEe--CCCCCCcccCC-------cCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccc
Confidence 444444 4568999885 46799986543 2468999999999999999999999999999999998732211
Q ss_pred ecCCCCCccccccccCCcceeEEEEehhhHHHHHHHHhCCCeEEEEE
Q 011244 129 TMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (490)
Q Consensus 129 tM~~p~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (490)
....+. .....||+++|++++|+.|++.+++|.+|+++|
T Consensus 84 ~~~~~~--------~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~~~ 122 (122)
T cd02130 84 SGTLGE--------PSGPYVPTVGISQEDGKALVAALANGGEVSANL 122 (122)
T ss_pred ccccCC--------CCCCEeeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 111111 235789999999999999999999999888764
No 11
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.72 E-value=9e-17 Score=141.53 Aligned_cols=113 Identities=33% Similarity=0.556 Sum_probs=91.7
Q ss_pred ecccCCCCCC---CceEEEEeccCCCccCCCCCCCCCccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeC
Q 011244 46 IGNFGVPQYG---GTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADD 122 (490)
Q Consensus 46 ~A~FG~~~yg---~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~nn 122 (490)
+|.||..... ..+.|.++. .++.++|++.... ++++++|+|++||+|+|.+|+.+|+++||+++||+|+
T Consensus 2 ~a~fg~~~~~~~~~~~~~~~~~-~~~~~~C~~~~~~-------~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~ 73 (118)
T cd04818 2 SAGFGPALTNVTADVVLAGAAP-ASNTDGCTAFTNA-------AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANN 73 (118)
T ss_pred CcccCCcCccccccceeEEEec-CCcccccCCCCcC-------CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence 5889976653 347787775 5688999988652 3468999999999999999999999999999999998
Q ss_pred CCC-CceecCCCCCccccccccCCcceeEEEEehhhHHHHHHHHhCCCeEEEEE
Q 011244 123 KTE-PLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (490)
Q Consensus 123 ~~~-~l~tM~~p~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (490)
.++ ..+.|..+. ....||+++|++++|+.|++++++|.+|+++|
T Consensus 74 ~~~~~~~~~~~~~---------~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v~~ 118 (118)
T cd04818 74 VAGGAPITMGGDD---------PDITIPAVMISQADGDALKAALAAGGTVTVTL 118 (118)
T ss_pred CCCCcceeccCCC---------CCCEEeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 764 345664221 24689999999999999999999998888764
No 12
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.65 E-value=7.5e-17 Score=145.50 Aligned_cols=160 Identities=21% Similarity=0.294 Sum_probs=117.5
Q ss_pred CcccchhHhHHHHhhccccee----eEEEee-ceEEEEccccccceeeeeecc-cCCCCCCCceEEEEeccCCCccCCCC
Q 011244 1 MREKLGFLVGILFLLCGLSFG----RFVVEK-NSLKVTSPEKIKGVYECAIGN-FGVPQYGGTLIGTVVYPKANQKACKG 74 (490)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~----~fvve~-~~l~V~~P~~l~g~y~~~~A~-FG~~~yg~~l~G~lv~~~~~~~gC~~ 74 (490)
|.+..|++|..++..+..+.. -+-.+. ..|+|++|..|+.+|+..+|. ||.... .++.+.-.++++|..||+.
T Consensus 1 M~p~gWl~l~~~L~~~vaa~~~~~~~v~~qD~~~F~vlsP~~l~Yty~~~pAkdfG~~F~-~r~e~~~lV~adPp~aC~e 79 (193)
T KOG3920|consen 1 MKPRGWLLLSFLLIIQVAAAKIPYEEVENQDNMLFTVLSPYTLAYTYQMKPAKDFGVHFP-DRFENLELVLADPPHACEE 79 (193)
T ss_pred CCcceehHHHHHHHHHHHHccCCcceeeecceEEEEecCcccEEEEEEecchhhhccccc-hhhcCcceeecCChhHHHH
Confidence 555567777666655332222 133333 368899999999999999884 997543 4666665556889999999
Q ss_pred CCCCCccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCC-----ceecCCCCCccccccccCCccee
Q 011244 75 FDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP-----LITMDTPEEENADAEYLQNITIP 149 (490)
Q Consensus 75 ~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~nn~~~~-----l~tM~~p~d~~~~~~~~~~i~IP 149 (490)
+.|.- ...+.|+|++||+|+|..|.+|+|+|||.++||.|+.... .+.|- |+ .+.++-.||
T Consensus 80 lrN~~-------f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI-~D------~sq~~AniP 145 (193)
T KOG3920|consen 80 LRNEI-------FAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMI-PD------ESQDRANIP 145 (193)
T ss_pred Hhhcc-------cCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhc-Cc------ccccccCCc
Confidence 98751 2347899999999999999999999999999999976432 35674 32 234578999
Q ss_pred EEEEehhhHHHHHHHHhCCCeEEEEE
Q 011244 150 SALISKSLGDSIKKSLSGGEMVNMNL 175 (490)
Q Consensus 150 sv~Isk~~G~~L~~~l~~g~~V~v~l 175 (490)
++++-..+|-.++..|++-..+.+.+
T Consensus 146 a~fllg~~Gy~ir~sL~r~~r~ha~i 171 (193)
T KOG3920|consen 146 AVFLLGVTGYYIRVSLKRYFRDHAKI 171 (193)
T ss_pred eEEEeccceEEEehhHHHhCCccEEE
Confidence 99999999999888887654433333
No 13
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.65 E-value=9.4e-16 Score=137.64 Aligned_cols=91 Identities=25% Similarity=0.380 Sum_probs=72.3
Q ss_pred CCccCCCCCCCCCccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCCccccccccCCc
Q 011244 67 ANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNI 146 (490)
Q Consensus 67 ~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~nn~~~~l~tM~~p~d~~~~~~~~~~i 146 (490)
++.+||++++.. + ++++++|+||+||+|+|.+|++|||++||++|||||+.+++. .|. .. ...
T Consensus 39 ~~~~gC~~~~~~---~---~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~-~~~--~~--------~~~ 101 (129)
T cd02124 39 VADDACQPLPDD---T---PDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPT-DQV--GS--------DAD 101 (129)
T ss_pred CCcccCcCCCcc---c---ccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcc-ccc--CC--------CCc
Confidence 567899998643 1 356899999999999999999999999999999999886543 332 11 123
Q ss_pred ceeEEEEehhhHHHHHHHHhCCCeEEEEE
Q 011244 147 TIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (490)
Q Consensus 147 ~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (490)
.||.+++ +++|+.|+++|++|.+|+++|
T Consensus 102 ~~~~~~~-~~~G~~l~~~l~~G~~vtv~f 129 (129)
T cd02124 102 SIIAAVT-PEDGEAWIDALAAGSNVTVDF 129 (129)
T ss_pred ceeeEEe-HHHHHHHHHHHhcCCeEEEeC
Confidence 4566666 999999999999998888764
No 14
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.63 E-value=3.3e-15 Score=135.44 Aligned_cols=105 Identities=19% Similarity=0.206 Sum_probs=75.9
Q ss_pred ccCCCCCCCceEEEEeccCCCccCCCCCCCCCccccCCCCCCCeEEEEecCCCC-----HHHHHHHHHhcCCcEEEEEeC
Q 011244 48 NFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCY-----FTLKAWNAQKGGAAAILVADD 122 (490)
Q Consensus 48 ~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~Cs-----F~~Kv~nAQ~aGA~aVII~nn 122 (490)
+|-.....+.++|.|++.. .-+|+-.. .+.+|+|+||+||+|+ |.+|++|||+|||+|||||||
T Consensus 26 ~~~s~~~~g~~tg~lv~~g--~~g~d~~~---------~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn 94 (139)
T cd04817 26 SYASMPVTGSATGSLYYCG--TSGGSYIC---------GGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSN 94 (139)
T ss_pred cccccccCCcceEEEEEcc--CCCccccC---------CCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeC
Confidence 3433334457899988753 34463211 2457999999999999 999999999999999999999
Q ss_pred CC--CCceecCCCCCccccccccCCcceeEEEEehhhHHHHHHHHhCCCeE
Q 011244 123 KT--EPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMV 171 (490)
Q Consensus 123 ~~--~~l~tM~~p~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V 171 (490)
.+ +.+..|- .++ ...++||+++|++++|+.|+++|.++.+|
T Consensus 95 ~~~~g~~~~~l-g~~-------~~~~~IP~v~is~~dG~~L~~~l~~~~tv 137 (139)
T cd04817 95 AALAGLQNPFL-VDT-------NNDTTIPSVSVDRADGQALLAALGQSTTV 137 (139)
T ss_pred CCCCCcccccc-cCC-------CCCceEeEEEeeHHHHHHHHHHhcCCCee
Confidence 83 3222221 111 12589999999999999999999665433
No 15
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.3e-14 Score=146.35 Aligned_cols=116 Identities=21% Similarity=0.284 Sum_probs=94.0
Q ss_pred eeeeeecccCCCCCCCceEEEEeccCCCccCCCCCCCCCccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEE
Q 011244 41 VYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVA 120 (490)
Q Consensus 41 ~y~~~~A~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~ 120 (490)
++...+|+||+......+.|.++ ++++.+||+++.+.... .+....+++||.||+|+|..|++|||++|++|+|||
T Consensus 35 sf~d~~a~f~~s~~~e~~~G~l~-~~ep~~aC~~i~~~p~~---~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVy 110 (348)
T KOG4628|consen 35 SFADLPALFGPSLPSEGNLGVLV-VAEPLNACNPITNFPEH---STRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVY 110 (348)
T ss_pred cccCCccccCCccccccceeeee-cCCCccccCccccCccC---CCCCcceEEEEEccCCchHHHHhhcccccCceEEEe
Confidence 67778999999988888999875 46678999999763111 134568999999999999999999999999999999
Q ss_pred eCCCCC-ceecCCCCCccccccccCCcceeEEEEehhhHHHHHHHHhCCC
Q 011244 121 DDKTEP-LITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGE 169 (490)
Q Consensus 121 nn~~~~-l~tM~~p~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~ 169 (490)
||.+.+ ++.|. .+ ..++.||++||+...|+.|++......
T Consensus 111 nn~~~~~lv~~~--~~-------~~~v~i~~~~vs~~~ge~l~~~~~~~~ 151 (348)
T KOG4628|consen 111 NNVGSEDLVAMA--SN-------PSKVDIHIVFVSVFSGELLSSYAGRTE 151 (348)
T ss_pred cCCCCchheeec--cC-------CccceeEEEEEeeehHHHHHHhhcccc
Confidence 987644 56663 22 247999999999999999999765543
No 16
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.50 E-value=3.3e-14 Score=120.67 Aligned_cols=98 Identities=28% Similarity=0.373 Sum_probs=65.2
Q ss_pred CCCceEEEEeccCC--CccCCCCCCCCCccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCceecC
Q 011244 54 YGGTLIGTVVYPKA--NQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMD 131 (490)
Q Consensus 54 yg~~l~G~lv~~~~--~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~nn~~~~l~tM~ 131 (490)
+++..+|.||.+.. ....|.+.+.. ....+++|||++||.|+|.+|++|||++||+||||+|.... ...+.
T Consensus 2 ~~~~~~~~lV~~~~~~~~~~~~~~~~~------~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~-~~~~~ 74 (101)
T PF02225_consen 2 PSGTVTGPLVPAGNGIDEGDCCPSDYN------GSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPN-NGSMI 74 (101)
T ss_dssp --EEEEEEEEEETTEEECCHHHHHHTS------TSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCS-CTTTT
T ss_pred CCCCEEEEEEEecCCCCcccccccccC------CccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCcc-ccCcc
Confidence 34567888873221 11223332221 14678999999999999999999999999999999992211 11111
Q ss_pred CCCCccccccccCCcceeEEEEehhhHHHHHHHH
Q 011244 132 TPEEENADAEYLQNITIPSALISKSLGDSIKKSL 165 (490)
Q Consensus 132 ~p~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l 165 (490)
. ......++||+++|++++|+.|++++
T Consensus 75 --~-----~~~~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 75 --D-----SEDPDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp --C-----EBTTTSTBSEEEEE-HHHHHHHHHHH
T ss_pred --c-----ccCCCCcEEEEEEeCHHHHhhhhccC
Confidence 1 11235689999999999999999875
No 17
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.49 E-value=1.7e-13 Score=120.65 Aligned_cols=99 Identities=26% Similarity=0.336 Sum_probs=75.8
Q ss_pred CCccCCCCCCCCCccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCCccccccccCCc
Q 011244 67 ANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNI 146 (490)
Q Consensus 67 ~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~nn~~~~l~tM~~p~d~~~~~~~~~~i 146 (490)
.+..+|.+... ++. ...++|+|+|++||+|+|.+|+.+||++||+|+||+|+.+.....|....+ .....
T Consensus 28 ~~~~~C~~~~~---~~~-~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~------~~~~~ 97 (126)
T cd00538 28 GPLVGCGYGTT---DDS-GADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGL------ESTDP 97 (126)
T ss_pred cceEEEecCcc---ccc-CCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccC------CCCCC
Confidence 35678988752 011 145789999999999999999999999999999999987643333321111 02356
Q ss_pred ceeEEEEehhhHHHHHHHHhCCCeEEEEE
Q 011244 147 TIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (490)
Q Consensus 147 ~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (490)
.||+++|++++|+.|++++.++.+|++++
T Consensus 98 ~iP~~~is~~~g~~l~~~~~~~~~v~~~~ 126 (126)
T cd00538 98 SIPTVGISYADGEALLSLLEAGKTVTVDL 126 (126)
T ss_pred cEeEEEeCHHHHHHHHHHHhcCCceEEeC
Confidence 89999999999999999999998877653
No 18
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.40 E-value=1.4e-12 Score=135.97 Aligned_cols=138 Identities=28% Similarity=0.390 Sum_probs=98.0
Q ss_pred EEccccccce----eeeeecccCCCCCCCceEEEEec--cCCCccCCCCCCCCCccccCCCCCCCeEEEEecCCCCHHHH
Q 011244 32 VTSPEKIKGV----YECAIGNFGVPQYGGTLIGTVVY--PKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLK 105 (490)
Q Consensus 32 V~~P~~l~g~----y~~~~A~FG~~~yg~~l~G~lv~--~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~K 105 (490)
+..|....+. +....+.||..+....-...+.+ ..+|.|-|++... .++++++++.||+|+|++|
T Consensus 41 l~~~~w~~~~~~~~~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~---------kl~~~~~~v~RGnC~Ft~K 111 (541)
T KOG2442|consen 41 LKVPTWVNGVEYLEFAGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQS---------KLSGKVALVFRGNCSFTEK 111 (541)
T ss_pred EeccccccccchhhhhhhhhhcCCcCCCCccccccchhhhcCCccccCCCCc---------cccceeEEEecccceeehh
Confidence 5555555432 33446778765433211111111 1357888888764 3569999999999999999
Q ss_pred HHHHHhcCCcEEEEEeCCCCCceecCCCCCccccccccCCcceeEEEEehhhHHHHHHHHhCCCeEEEEEEecccCCCCC
Q 011244 106 AWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPD 185 (490)
Q Consensus 106 v~nAQ~aGA~aVII~nn~~~~l~tM~~p~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l~~~~~~p~~d 185 (490)
+++||++||.|++|+||..| +.-|..-+. +...+++||++||++++|+.|.+....+++|++.|+-. +-|.-|
T Consensus 112 a~~Aq~aGAsaLliin~~~d-~~~~~~~~~-----~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~~lYaP-k~P~vD 184 (541)
T KOG2442|consen 112 AKLAQAAGASALLIINNKKD-LLFMPCGNK-----ETSLDVTIPVAMISYSDGRDLNKSTRSNDNVELALYAP-KRPAVD 184 (541)
T ss_pred hhhhhhcCceEEEEEcCchh-hccCCCCCC-----CccccccceEEEEEhhhHHHHHhhhccCCeEEEEEECC-CCCCcc
Confidence 99999999999999999754 444532111 22468999999999999999999999999999999863 345444
No 19
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.38 E-value=8.6e-12 Score=113.67 Aligned_cols=106 Identities=21% Similarity=0.183 Sum_probs=77.4
Q ss_pred cccCCCCCCCceEEEEeccCCCccCCCCCCCCCccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCC
Q 011244 47 GNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP 126 (490)
Q Consensus 47 A~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~nn~~~~ 126 (490)
..|+.+...+..++.+++.. . |.+-+.. ..+++++|+|++||+|+|.+|+.|||++||++|||+|+..+.
T Consensus 15 ~~~~~~~~~~~~~~~lv~~g---~-g~~~d~~------~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~ 84 (143)
T cd02133 15 AFSGNPTDLLGKTYELVDAG---L-GTPEDFE------GKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGL 84 (143)
T ss_pred ccCCCcCCCCCcEEEEEEcc---C-CchhccC------CCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCc
Confidence 34566555567889998852 2 2322221 135789999999999999999999999999999999987543
Q ss_pred ceecCCCCCccccccccCCcceeEEEEehhhHHHHHHHHhCCCeEEEEE
Q 011244 127 LITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (490)
Q Consensus 127 l~tM~~p~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (490)
..|. .+ ....||+++|++++|+.|++++++ ++++++
T Consensus 85 -~~~~--~~--------~~~~iP~v~Is~~dG~~L~~~l~~--~~~i~~ 120 (143)
T cd02133 85 -IPGT--LG--------EAVFIPVVFISKEDGEALKAALES--SKKLTF 120 (143)
T ss_pred -cccc--CC--------CCCeEeEEEecHHHHHHHHHHHhC--CCeEEE
Confidence 2231 11 135799999999999999999987 344443
No 20
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.34 E-value=1.8e-11 Score=109.60 Aligned_cols=104 Identities=21% Similarity=0.122 Sum_probs=76.6
Q ss_pred CceEEEEeccCCCccCCCCCCCCCccccCCCCCCCeEEEEecCCC--CHHHHHHHHHhcCCcEEEEEeCCCCCceecCCC
Q 011244 56 GTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDC--YFTLKAWNAQKGGAAAILVADDKTEPLITMDTP 133 (490)
Q Consensus 56 ~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~C--sF~~Kv~nAQ~aGA~aVII~nn~~~~l~tM~~p 133 (490)
+.++|++++.. .| .+-+ |. ..+++|+||||+||.| +|..|+.+|+++||+||||+|+.++.+..+...
T Consensus 21 ~~~~~~lV~~g---~G-~~~d-----~~-~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~ 90 (127)
T cd04819 21 GEAKGEPVDAG---YG-LPKD-----FD-GLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDE 90 (127)
T ss_pred CCeeEEEEEeC---CC-CHHH-----cC-CCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccc
Confidence 45899999853 23 2211 11 1247899999999999 999999999999999999998776543322111
Q ss_pred CCccccccccCCcceeEEEEehhhHHHHHHHHhCCCeEEEE
Q 011244 134 EEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMN 174 (490)
Q Consensus 134 ~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~ 174 (490)
. ........||++.|+++||+.|+++++.|+.|.+.
T Consensus 91 ~-----~~~~~~~~IP~v~Is~edg~~L~~~l~~g~~~~~~ 126 (127)
T cd04819 91 G-----TEDGPPSPIPAASVSGEDGLRLARVAERNDTLVLR 126 (127)
T ss_pred c-----ccCCCCCCCCEEEEeHHHHHHHHHHHhcCCceEee
Confidence 1 01123568999999999999999999998877653
No 21
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.23 E-value=2.9e-11 Score=109.24 Aligned_cols=103 Identities=20% Similarity=0.159 Sum_probs=77.3
Q ss_pred CCceEEEEeccCCCccCCCCCCCCCccccCCCCCCCeEEEEecCCC------CHHHH-------HHHHHhcCCcEEEEEe
Q 011244 55 GGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDC------YFTLK-------AWNAQKGGAAAILVAD 121 (490)
Q Consensus 55 g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~C------sF~~K-------v~nAQ~aGA~aVII~n 121 (490)
++.++|+|++..+. + .+.. +. ...++|+||||+||.| +|..| +.+|+++||.|+||+|
T Consensus 14 ~~gvta~vv~v~~~--~--~~~~----~~-~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s 84 (134)
T cd04815 14 PEGITAEVVVVKSF--D--ELKA----AP-AGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRS 84 (134)
T ss_pred CCCcEEEEEEECCH--H--HHHh----cc-hhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEe
Confidence 45699999986521 2 2221 10 1457899999999999 99999 6999999999999999
Q ss_pred CCCCC---c--eecCCCCCccccccccCCcceeEEEEehhhHHHHHHHHhCCCeEEEEE
Q 011244 122 DKTEP---L--ITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (490)
Q Consensus 122 n~~~~---l--~tM~~p~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (490)
+.+.. . -+|..+ .....||++.|+.++|+.|.+++++|++|+++|
T Consensus 85 ~~~~~~~~~~~G~~~~~---------~~~~~IP~v~is~ed~~~L~r~l~~g~~v~~~l 134 (134)
T cd04815 85 IGTDSHRSPHTGMMSYD---------DGVPKIPAAAISVEDADMLERLAARGKPIRVNL 134 (134)
T ss_pred cCcccCCCCcCCccccC---------CCCCCCCEEEechhcHHHHHHHHhCCCCeEEeC
Confidence 75432 1 122211 124679999999999999999999999888764
No 22
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.05 E-value=1e-09 Score=97.09 Aligned_cols=85 Identities=18% Similarity=0.199 Sum_probs=67.5
Q ss_pred CccCCCCCCCCCccccCCCCCCCeEEEEecCCC-CHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCCccccccccCCc
Q 011244 68 NQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDC-YFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNI 146 (490)
Q Consensus 68 ~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~C-sF~~Kv~nAQ~aGA~aVII~nn~~~~l~tM~~p~d~~~~~~~~~~i 146 (490)
...+|++..... ..++|+|||.+||.| +|..|+.+|+++||.|+|++++..+.. .+. ....
T Consensus 36 ~~~~C~~~~~~~------~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~-~~~-----------~~~~ 97 (126)
T cd02120 36 DASLCLPGSLDP------SKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGL-DVV-----------ADAH 97 (126)
T ss_pred ccccCCCCCCCh------hhccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCc-eec-----------cccc
Confidence 346898764321 356899999999999 999999999999999999999875531 221 1135
Q ss_pred ceeEEEEehhhHHHHHHHHhCCCe
Q 011244 147 TIPSALISKSLGDSIKKSLSGGEM 170 (490)
Q Consensus 147 ~IPsv~Isk~~G~~L~~~l~~g~~ 170 (490)
.||+++|++++|+.|+++++++..
T Consensus 98 ~iP~v~I~~~~g~~l~~y~~~~~~ 121 (126)
T cd02120 98 VLPAVHVDYEDGTAILSYINSTSN 121 (126)
T ss_pred ccceEEECHHHHHHHHHHHHcCCC
Confidence 799999999999999999987643
No 23
>PF02128 Peptidase_M36: Fungalysin metallopeptidase (M36); InterPro: IPR001842 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M36 (fungalysin family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Fungalysin is produced by fungi, Aspergillus and other species, to aid degradation of host lung cell walls on infection. The enzyme is a 42kDa single chain protein, with a pH optimum of 7.5-8.0 and optimal temperature of 60 celcius [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0005615 extracellular space
Probab=98.96 E-value=8.6e-11 Score=121.49 Aligned_cols=144 Identities=19% Similarity=0.308 Sum_probs=103.0
Q ss_pred eEEEeecCCCCCC---C-cchhhHHHHHHhHHHHHHHhhCCceeEEEEEEEeecchh---------hhhhcccccccccC
Q 011244 189 EYEFWTNSNDECG---P-KCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEA---------FILSKQCKSQCINH 255 (490)
Q Consensus 189 e~~~w~~snd~cg---~-~cd~~~~fi~~f~~~aq~l~~~g~~~f~p~~~~~~c~~~---------~~~~~~~~~~Ci~~ 255 (490)
||.| ..||++.| + .|+... ....| +|||+||+.++++.+-.+. +...+. ..
T Consensus 192 Ey~H-GiSnRLvgG~~~s~cL~~~--------e~~~m-GEGWsD~~Al~~~~~~~d~~~~~~~~G~y~~~~~------~~ 255 (378)
T PF02128_consen 192 EYGH-GISNRLVGGPANSSCLQNL--------ESGGM-GEGWSDFFALMMTMKPGDTRDTDYGIGTYVTGNP------TD 255 (378)
T ss_pred eecc-cccccccCCCccccccccc--------ccCCC-cccHHHHHHHHheecccccCCCCceeeeeecCCc------cc
Confidence 9999 88999987 2 575332 13567 4999999999999874431 221211 24
Q ss_pred CccccCCC-CCCCcCC-CCchhhHHHHHHHhhhhhhcccCCCCcch--------hhhHHHHhhhCCCcchhhhHHHHHHH
Q 011244 256 GRYCAPDP-EQDFSRG-YDGKDVVVQNLRQACFFKVANESRKPWLW--------WDYVTDFAIRCPMKEKKYTKECAEQV 325 (490)
Q Consensus 256 GrYCa~dP-~~d~~~~-~~G~dvv~e~lRqlCi~~~~~~~~~~~~W--------W~Yv~~f~~~C~~~~~~y~~~C~~~v 325 (490)
|+.+++.| +++++.+ ++.+++... .+...|..+.+| |.+|+++++.- ..|+.+.++.+
T Consensus 256 g~GIR~~pYSt~~~~Np~tY~~i~~~--------~~~~~H~~GeVWA~~Lwe~~~~Lv~~~G~~~----~~~~~~~Gn~~ 323 (378)
T PF02128_consen 256 GAGIRRYPYSTDMTVNPLTYGDIGRD--------GVSEVHAIGEVWATMLWEVYWALVDKHGFSP----DLYNGTGGNNR 323 (378)
T ss_pred ccccccccccCCcCCCCCcHhhhccC--------cccccccCcchHHHHHHHHHHHHHHHhCCCC----cccccccHHHH
Confidence 56677777 3454433 444444110 112337788888 99999999975 46777789999
Q ss_pred HHHhCCChhhcccccCCc-cCcccchHHHHHHHHHhcC
Q 011244 326 IKSLGVDLKKVDECVGDP-EADVDNQVLKTEQDAQIGK 362 (490)
Q Consensus 326 ~~~l~id~~ki~~C~~d~-~~d~~n~iL~~e~~~q~~~ 362 (490)
+++|.+|..|++.| +| ++++||+||+|++....++
T Consensus 324 ~~~lv~dgmklqPc--nPtf~daRDAIl~Ad~~~~gGa 359 (378)
T PF02128_consen 324 AMQLVVDGMKLQPC--NPTFVDARDAILQADQALYGGA 359 (378)
T ss_pred HHHHHHHHHhcCCC--CCChHHHHHHHHHHHHHHhCCc
Confidence 99999999999999 77 8999999999998876444
No 24
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.86 E-value=1.2e-08 Score=96.59 Aligned_cols=123 Identities=21% Similarity=0.259 Sum_probs=77.7
Q ss_pred ccCCCCCCCceEEEEeccCCCccCCCCCCCCCcccc-CCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCC
Q 011244 48 NFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFK-SRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP 126 (490)
Q Consensus 48 ~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~-~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~nn~~~~ 126 (490)
+|-.-...++++|.|||. +.| ...+.. .+. ..-+++++||||+||.|+|.+|+++||++||+|||||++..+.
T Consensus 19 ~f~~~s~~G~v~g~lVyv---n~G-~~~Df~--~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~ 92 (183)
T cd02128 19 GYVAYSAAGTVTGKLVYA---NYG-RKKDFE--DLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADF 92 (183)
T ss_pred cccCCCCCCceEEEEEEc---CCC-CHHHHH--HHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHc
Confidence 454334456789999986 244 322211 011 1135689999999999999999999999999999999884211
Q ss_pred -------------------ceecCCCCCccc---cccccCCcceeEEEEehhhHHHHHHHHhCCCeEEEEEEecc
Q 011244 127 -------------------LITMDTPEEENA---DAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTE 179 (490)
Q Consensus 127 -------------------l~tM~~p~d~~~---~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l~~~~ 179 (490)
..|.+.|..... ..+...-.+||++=||..++..|++.|.- .. +--+|+.
T Consensus 93 ~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G-~~--~p~~w~g 164 (183)
T cd02128 93 PIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGG-PV--CPSGWKG 164 (183)
T ss_pred CcccCcceeecceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCC-CC--CCccccC
Confidence 111111111000 00001235799999999999999999954 32 2346753
No 25
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.66 E-value=1.2e-08 Score=73.83 Aligned_cols=41 Identities=41% Similarity=0.862 Sum_probs=34.5
Q ss_pred chhhHhhhc-cCCCCCCceecCCCceeeeeCCCccceecCCee
Q 011244 411 DVDECEEKL-ACQCPECKCKDTWGSYECSCGSGLLYMQEHDTC 452 (490)
Q Consensus 411 didEc~~~~-~c~c~~~~c~nt~g~y~C~C~~~~~~~~~~~tC 452 (490)
|||||++.. .|. +...|.||.|||+|.|+.||.+..+..+|
T Consensus 1 DidEC~~~~~~C~-~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 1 DIDECAEGPHNCP-ENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp ESSTTTTTSSSSS-TTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred CccccCCCCCcCC-CCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 899999963 564 35689999999999999999977777766
No 26
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.32 E-value=3e-06 Score=82.83 Aligned_cols=124 Identities=23% Similarity=0.291 Sum_probs=80.5
Q ss_pred CceEEEEeccCCCccCCCCCCCCCcccc-CCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCC--------
Q 011244 56 GTLIGTVVYPKANQKACKGFDEVDLSFK-SRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP-------- 126 (490)
Q Consensus 56 ~~l~G~lv~~~~~~~gC~~~~~~~~~~~-~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~nn~~~~-------- 126 (490)
+.++|.|||+. .|..-+.. .+. ..-+++|+|||+++|.|.+..|+++|+++||+|||||++..+.
T Consensus 43 g~v~g~lVyvn----yG~~~D~~--~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~ 116 (220)
T cd02121 43 GNVTAELVYAN----YGSPEDFE--YLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENG 116 (220)
T ss_pred CCceEEEEEcC----CCcHHHHH--HHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhccccccccc
Confidence 56899999963 44433221 111 1135789999999999999999999999999999999875221
Q ss_pred ------------ce----ec---CCCCCc-c----c--c------ccccCCcceeEEEEehhhHHHHHHHHhCCCeEEEE
Q 011244 127 ------------LI----TM---DTPEEE-N----A--D------AEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMN 174 (490)
Q Consensus 127 ------------l~----tM---~~p~d~-~----~--~------~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~ 174 (490)
-+ .+ ..++|- + + . .....-.+||+.=||..+++.|++.|.... +-
T Consensus 117 ~~yP~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g~~---~p 193 (220)
T cd02121 117 KTYPDGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGGPG---AP 193 (220)
T ss_pred ccCCCCCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCCCC---CC
Confidence 00 00 111110 0 0 0 011123579999999999999999997432 44
Q ss_pred EEecccCCCCCCceeEEEe
Q 011244 175 LDWTEALPHPDERVEYEFW 193 (490)
Q Consensus 175 l~~~~~~p~~d~~Ve~~~w 193 (490)
-+|+..++ +.|.+|
T Consensus 194 ~~W~g~l~-----~~y~~g 207 (220)
T cd02121 194 SDWQGGLP-----VTYRLG 207 (220)
T ss_pred ccccCCCC-----CceeeC
Confidence 47766543 566665
No 27
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.18 E-value=6e-06 Score=76.21 Aligned_cols=96 Identities=19% Similarity=0.126 Sum_probs=65.4
Q ss_pred CceEEEEeccCC--CccCCCCCCCCCccccCCCCCCCeEEEEecCC------------------CCHHHHHHHHHhcCCc
Q 011244 56 GTLIGTVVYPKA--NQKACKGFDEVDLSFKSRPGGLPTFLLVDRGD------------------CYFTLKAWNAQKGGAA 115 (490)
Q Consensus 56 ~~l~G~lv~~~~--~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~------------------CsF~~Kv~nAQ~aGA~ 115 (490)
++++|+||+... ...+|...+..+ -+++|+||||.||+ |+|..|+.+|+++||+
T Consensus 18 g~vtg~lVfvGyGi~~~~~~~~Dy~g------iDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~ 91 (151)
T cd04822 18 GAVTAPVVFAGYGITAPELGYDDYAG------LDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAA 91 (151)
T ss_pred CCceEeEEEecCCcCccccchhhccC------CCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCe
Confidence 579999998742 245676544332 35789999999985 9999999999999999
Q ss_pred EEEEEeCCCCCceecCCCCCccccccccCCcceeEEEEehhhHHHHHHHHh
Q 011244 116 AILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLS 166 (490)
Q Consensus 116 aVII~nn~~~~l~tM~~p~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~ 166 (490)
||||+++..+.. +.++. ......+ .++.|+....+.+..++.
T Consensus 92 aVIv~~d~~~~~-----~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~ 133 (151)
T cd04822 92 AVIVVNGPNSHS-----GDADR---LPRFGGT-APQRVDIAAADPWFTAAE 133 (151)
T ss_pred EEEEEeCCcccC-----ccccc---ccccCcc-ceEEechHHHHHHhhhhh
Confidence 999999865432 11100 0000111 177788888888777643
No 28
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.15 E-value=7.1e-06 Score=74.94 Aligned_cols=70 Identities=19% Similarity=0.109 Sum_probs=52.7
Q ss_pred ecccCCCCCCCceEEEEeccCC--CccCCCCCCCCCccccCCCCCCCeEEEEecCCC------------------CHHHH
Q 011244 46 IGNFGVPQYGGTLIGTVVYPKA--NQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDC------------------YFTLK 105 (490)
Q Consensus 46 ~A~FG~~~yg~~l~G~lv~~~~--~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~C------------------sF~~K 105 (490)
+.+|+.+ +.++++||+... ...+|.-.+..+ -+++|+||||.||+| +|..|
T Consensus 11 ~~~~~~~---~~~~aelVfvGyGi~a~~~~~dDYag------~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K 81 (142)
T cd04814 11 MLNVDAV---AIKDAPLVFVGYGIKAPELSWDDYAG------LDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYK 81 (142)
T ss_pred ccCCCCc---cccceeeEEecCCcCCCCCChhhcCC------CCCCCcEEEEEcCCCCcccccccccccccccccCHHHH
Confidence 3445532 457889888642 234666544432 367899999999999 79999
Q ss_pred HHHHHhcCCcEEEEEeCCC
Q 011244 106 AWNAQKGGAAAILVADDKT 124 (490)
Q Consensus 106 v~nAQ~aGA~aVII~nn~~ 124 (490)
+.+|+++||+||||+++.+
T Consensus 82 ~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 82 YEEAARHGAAGVLIVHELA 100 (142)
T ss_pred HHHHHHCCCcEEEEEeCCC
Confidence 9999999999999999864
No 29
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.07 E-value=9.4e-06 Score=74.47 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=67.8
Q ss_pred CCceEEEEeccCCCccCCC-CCCCCCccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCc------
Q 011244 55 GGTLIGTVVYPKANQKACK-GFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPL------ 127 (490)
Q Consensus 55 g~~l~G~lv~~~~~~~gC~-~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~nn~~~~l------ 127 (490)
.++++|++||+. .|=. .|. .+...-+++|+|+|++.|.-++..||+|||++||+|||||.+..+.-
T Consensus 12 sG~Vtg~~VYvN---yG~~eDf~----~L~~~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~~~ 84 (153)
T cd02131 12 KGTLQAEVVDVQ---YGSVEDLR----RIRDNMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKTRHTW 84 (153)
T ss_pred CCceEEEEEEec---CCCHHHHH----HHHhCCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCcCCCc
Confidence 468999999963 2211 111 11111356899999999999999999999999999999998753210
Q ss_pred ---e--ecCCCCCc-c----c--cc---cccCCcceeEEEEehhhHHHHHHHHh
Q 011244 128 ---I--TMDTPEEE-N----A--DA---EYLQNITIPSALISKSLGDSIKKSLS 166 (490)
Q Consensus 128 ---~--tM~~p~d~-~----~--~~---~~~~~i~IPsv~Isk~~G~~L~~~l~ 166 (490)
. .+..++|- | + +. ....-.+||+.=||..++..|.++-.
T Consensus 85 ~~v~~v~~~~~GDP~TPG~PS~~~~~R~~~~~lP~IPs~PIS~~dA~~lL~~~~ 138 (153)
T cd02131 85 HQAFMVSLNPGGDPSTPGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAPP 138 (153)
T ss_pred cceEEEecCCCCCCCCCCCccccCcccCCcCCCCCCcccccCHHHHHHHHhCCc
Confidence 0 11101210 0 0 00 11123679999999999999887654
No 30
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.02 E-value=1.6e-05 Score=72.31 Aligned_cols=63 Identities=16% Similarity=0.051 Sum_probs=49.6
Q ss_pred CceEEEEeccCC--CccCCCCCCCCCccccCCCCCCCeEEEEecCCCC------------HHHHHHHHHhcCCcEEEEEe
Q 011244 56 GTLIGTVVYPKA--NQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCY------------FTLKAWNAQKGGAAAILVAD 121 (490)
Q Consensus 56 ~~l~G~lv~~~~--~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~Cs------------F~~Kv~nAQ~aGA~aVII~n 121 (490)
+.++|+||+... +..+|..-+..+ -+++|+||||.||.|. +..|+++|+++||+||||++
T Consensus 20 g~v~gelVfvGyG~~~~~~~~~Dy~~------iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~ 93 (137)
T cd04820 20 ASVEAPLVFVGYGLVAPELGHDDYAG------LDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLT 93 (137)
T ss_pred CCceEeEEEecCCcCccCcCHhhccC------CCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEe
Confidence 568999998642 235666544322 3678999999999994 88999999999999999998
Q ss_pred CCC
Q 011244 122 DKT 124 (490)
Q Consensus 122 n~~ 124 (490)
+..
T Consensus 94 d~~ 96 (137)
T cd04820 94 TPR 96 (137)
T ss_pred CCc
Confidence 753
No 31
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.49 E-value=6.8e-05 Score=52.18 Aligned_cols=38 Identities=39% Similarity=0.910 Sum_probs=29.4
Q ss_pred chhhHhhhccCCCCCCceecCCCceeeeeCCCccceecCCee
Q 011244 411 DVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTC 452 (490)
Q Consensus 411 didEc~~~~~c~c~~~~c~nt~g~y~C~C~~~~~~~~~~~tC 452 (490)
|+|||....+|+ ....|.|+.|+|.|.|+.+|. ++..|
T Consensus 1 d~~~C~~~~~C~-~~~~C~~~~g~~~C~C~~g~~---~g~~C 38 (39)
T smart00179 1 DIDECASGNPCQ-NGGTCVNTVGSYRCECPPGYT---DGRNC 38 (39)
T ss_pred CcccCcCCCCcC-CCCEeECCCCCeEeECCCCCc---cCCcC
Confidence 689998744666 334899999999999999987 44444
No 32
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=97.18 E-value=0.00022 Score=50.04 Aligned_cols=26 Identities=42% Similarity=0.883 Sum_probs=23.2
Q ss_pred ceecCCCceeeeeCCCccceecCCee
Q 011244 427 KCKDTWGSYECSCGSGLLYMQEHDTC 452 (490)
Q Consensus 427 ~c~nt~g~y~C~C~~~~~~~~~~~tC 452 (490)
.|+|+.|+|+|+|+.||.+..|++||
T Consensus 11 ~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 11 ICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp EEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCccCCCceEeECCCCCEECcCCCCC
Confidence 79999999999999999999999998
No 33
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=96.30 E-value=0.0025 Score=62.05 Aligned_cols=46 Identities=30% Similarity=0.638 Sum_probs=35.5
Q ss_pred CCCCccCCcchhhHhhhccCCCCCCceecCCCceeeeeCCCccceecCCe
Q 011244 402 TEPAICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDT 451 (490)
Q Consensus 402 ~~p~~C~~~didEc~~~~~c~c~~~~c~nt~g~y~C~C~~~~~~~~~~~t 451 (490)
..-.+|. |+|||... .+.|. ..|.||.|+|.|.|+.||.+..+..|
T Consensus 179 l~~~~C~--~~~~C~~~-~~~c~-~~C~~~~g~~~c~c~~g~~~~~~~~~ 224 (224)
T cd01475 179 FQGKICV--VPDLCATL-SHVCQ-QVCISTPGSYLCACTEGYALLEDNKT 224 (224)
T ss_pred cccccCc--CchhhcCC-CCCcc-ceEEcCCCCEEeECCCCccCCCCCCC
Confidence 4556777 89999864 33343 37999999999999999998777653
No 34
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=96.12 E-value=0.0029 Score=40.42 Aligned_cols=22 Identities=32% Similarity=0.712 Sum_probs=20.6
Q ss_pred ceeeeeCCCccceecCCeeeec
Q 011244 434 SYECSCGSGLLYMQEHDTCISK 455 (490)
Q Consensus 434 ~y~C~C~~~~~~~~~~~tC~~~ 455 (490)
||.|.|+.||.+..++++|++.
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DI 22 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDI 22 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccC
Confidence 7999999999999999999875
No 35
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=96.01 E-value=0.0047 Score=43.33 Aligned_cols=31 Identities=35% Similarity=0.821 Sum_probs=22.1
Q ss_pred ccCCCCCCceecCCCceeeeeCCCccceecCCee
Q 011244 419 LACQCPECKCKDTWGSYECSCGSGLLYMQEHDTC 452 (490)
Q Consensus 419 ~~c~c~~~~c~nt~g~y~C~C~~~~~~~~~~~tC 452 (490)
..|+ +.+.|.||.++|.|+|++||.. |+.+|
T Consensus 6 ~~C~-~nA~C~~~~~~~~C~C~~Gy~G--dG~~C 36 (36)
T PF12947_consen 6 GGCH-PNATCTNTGGSYTCTCKPGYEG--DGFFC 36 (36)
T ss_dssp GGS--TTCEEEE-TTSEEEEE-CEEEC--CSTCE
T ss_pred CCCC-CCcEeecCCCCEEeECCCCCcc--CCcCC
Confidence 4566 7789999999999999988865 44443
No 36
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=96.00 E-value=0.0045 Score=42.17 Aligned_cols=34 Identities=44% Similarity=0.870 Sum_probs=26.1
Q ss_pred chhhHhhhccCCCCCCceecCCCceeeeeCCCccc
Q 011244 411 DVDECEEKLACQCPECKCKDTWGSYECSCGSGLLY 445 (490)
Q Consensus 411 didEc~~~~~c~c~~~~c~nt~g~y~C~C~~~~~~ 445 (490)
|+|||....+|. ....|.|+.|+|.|.|+.+|..
T Consensus 1 ~~~~C~~~~~C~-~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 1 DIDECASGNPCQ-NGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred CcccCCCCCCcC-CCCEeECCCCCeEeECCCCCcC
Confidence 578897643554 3457999999999999988753
No 37
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=95.99 E-value=0.0056 Score=68.65 Aligned_cols=52 Identities=31% Similarity=0.744 Sum_probs=43.7
Q ss_pred CCCCccCCcchhhHhhh-ccCCCCCCceecCCCceeeeeCCCccceecCCeeeecC
Q 011244 402 TEPAICLSEDVDECEEK-LACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISKD 456 (490)
Q Consensus 402 ~~p~~C~~~didEc~~~-~~c~c~~~~c~nt~g~y~C~C~~~~~~~~~~~tC~~~~ 456 (490)
..|..|. |+|||++. ..|- |...|.|-.|+|+|.|..+|.++.|..|||...
T Consensus 726 gdgr~c~--d~~eca~~~~~CG-p~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~ 778 (1289)
T KOG1214|consen 726 GDGRNCV--DENECATGFHRCG-PNSVCINLPGSYRCECRSGYEFADDRHTCVLIT 778 (1289)
T ss_pred CCCCCCC--ChhhhccCCCCCC-CCceeecCCCceeEEEeecceeccCCcceEEec
Confidence 4556666 99999985 4555 778999999999999999999999999998743
No 38
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.0052 Score=61.18 Aligned_cols=44 Identities=27% Similarity=0.437 Sum_probs=33.3
Q ss_pred CCCCCccCCcchhhHhhhccCCCCCCceecCCCceeeeeCCCccce
Q 011244 401 TTEPAICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYM 446 (490)
Q Consensus 401 ~~~p~~C~~~didEc~~~~~c~c~~~~c~nt~g~y~C~C~~~~~~~ 446 (490)
...-.-|. |||||.+.++|-=+.--|+||-|||.|.+++||.-.
T Consensus 227 ~lde~gCv--DvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g 270 (350)
T KOG4260|consen 227 KLDEEGCV--DVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKG 270 (350)
T ss_pred eecccccc--cHHHHhcCCCCCChhheeecCCCceEecccccccCC
Confidence 34466777 999999985532244469999999999998887653
No 39
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.53 E-value=0.039 Score=49.14 Aligned_cols=86 Identities=16% Similarity=0.283 Sum_probs=57.7
Q ss_pred chhhhHHHHhhhCCCcchhhhHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEc
Q 011244 298 LWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVIN 377 (490)
Q Consensus 298 ~WW~Yv~~f~~~C~~~~~~y~~~C~~~v~~~l~id~~ki~~C~~d~~~d~~n~iL~~e~~~q~~~~~~~~~~~~Ptl~IN 377 (490)
.+|+|....-..= ...+.+=-..+++++|+|..++++|+.++. -...++++...-.. .++...||++||
T Consensus 68 ~~~~~~~~lf~~~----~~~~~~~l~~~a~~~gl~~~~~~~~~~~~~---~~~~~~~~~~~~~~----~gi~gtPt~~v~ 136 (154)
T cd03023 68 KYLEFHNALMATR----GRLNEESLLRIAKKAGLDEAKLKKDMDDPE---IEATIDKNRQLARA----LGITGTPAFIIG 136 (154)
T ss_pred HHHHHHHHHHhcC----CCCCHHHHHHHHHHcCCCHHHHHHHhhChH---HHHHHHHHHHHHHH----cCCCcCCeEEEC
Confidence 6888877653321 112233355678899999999999986532 23445554432222 358899999999
Q ss_pred CeeeeeccChhhHHHHh
Q 011244 378 NRQYRGKLDKGAVLKAI 394 (490)
Q Consensus 378 ~~~yrg~l~~~~vl~~i 394 (490)
|+.+.|..+.+.+..+|
T Consensus 137 g~~~~G~~~~~~l~~~i 153 (154)
T cd03023 137 DTVIPGAVPADTLKEAI 153 (154)
T ss_pred CEEecCCCCHHHHHHHh
Confidence 99999998877766554
No 40
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=94.98 E-value=0.012 Score=66.21 Aligned_cols=42 Identities=36% Similarity=0.841 Sum_probs=36.8
Q ss_pred chhhHhhhccCCCCCCceecCCCceeeeeCCCccceecCCeeeecC
Q 011244 411 DVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISKD 456 (490)
Q Consensus 411 didEc~~~~~c~c~~~~c~nt~g~y~C~C~~~~~~~~~~~tC~~~~ 456 (490)
|+|||. ...|+ +.+.|.||.|||.|.|.+||.- |+-.||+-.
T Consensus 826 dvDeC~-psrCh-p~A~CyntpgsfsC~C~pGy~G--DGf~CVP~~ 867 (1289)
T KOG1214|consen 826 DVDECS-PSRCH-PAATCYNTPGSFSCRCQPGYYG--DGFQCVPDT 867 (1289)
T ss_pred cccccC-ccccC-CCceEecCCCcceeecccCccC--CCceecCCC
Confidence 999998 45888 8889999999999999999876 788888763
No 41
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=94.22 E-value=0.031 Score=68.63 Aligned_cols=32 Identities=31% Similarity=0.827 Sum_probs=25.4
Q ss_pred hhhHhhhccCCCCCCceecCCCceeeeeCCCccc
Q 011244 412 VDECEEKLACQCPECKCKDTWGSYECSCGSGLLY 445 (490)
Q Consensus 412 idEc~~~~~c~c~~~~c~nt~g~y~C~C~~~~~~ 445 (490)
|+||.. ..|. .+..|.|+.|||.|-|++++.-
T Consensus 3942 i~eCs~-n~C~-~gg~C~n~~gsf~CncT~g~~g 3973 (4289)
T KOG1219|consen 3942 ISECSK-NVCG-TGGQCINIPGSFHCNCTPGILG 3973 (4289)
T ss_pred cccccc-cccc-CCceeeccCCceEeccChhHhc
Confidence 888874 3555 3458999999999999998763
No 42
>smart00181 EGF Epidermal growth factor-like domain.
Probab=94.21 E-value=0.034 Score=37.72 Aligned_cols=25 Identities=40% Similarity=0.777 Sum_probs=20.4
Q ss_pred cCCCCCCceecCCCceeeeeCCCccce
Q 011244 420 ACQCPECKCKDTWGSYECSCGSGLLYM 446 (490)
Q Consensus 420 ~c~c~~~~c~nt~g~y~C~C~~~~~~~ 446 (490)
.|. .. .|.|+.|+|.|.|+.||...
T Consensus 7 ~C~-~~-~C~~~~~~~~C~C~~g~~g~ 31 (35)
T smart00181 7 PCS-NG-TCINTPGSYTCSCPPGYTGD 31 (35)
T ss_pred CCC-CC-EEECCCCCeEeECCCCCccC
Confidence 455 23 79999999999999998764
No 43
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=93.99 E-value=0.041 Score=36.62 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=19.0
Q ss_pred CCceecCCCceeeeeCCCccce
Q 011244 425 ECKCKDTWGSYECSCGSGLLYM 446 (490)
Q Consensus 425 ~~~c~nt~g~y~C~C~~~~~~~ 446 (490)
...|+|+.++|+|.|+.+|...
T Consensus 11 ~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 11 GGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCEEecCCCCeEeECCCCCccc
Confidence 4689999999999999998653
No 44
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=92.79 E-value=0.15 Score=47.61 Aligned_cols=38 Identities=21% Similarity=0.147 Sum_probs=30.3
Q ss_pred CCCCCeEEEEecCCCC-------------------HHHHHHHHHhcCCcEEEEEeCC
Q 011244 86 PGGLPTFLLVDRGDCY-------------------FTLKAWNAQKGGAAAILVADDK 123 (490)
Q Consensus 86 ~~~~g~IvLV~RG~Cs-------------------F~~Kv~nAQ~aGA~aVII~nn~ 123 (490)
-+++||||||.+|+=. ...|...|+++||+|||++++.
T Consensus 46 ~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 46 LDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred CCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 3567888888877643 3359999999999999999764
No 45
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=90.80 E-value=4.5 Score=36.34 Aligned_cols=84 Identities=14% Similarity=0.227 Sum_probs=50.0
Q ss_pred chhhhHHHHhhhCCCcchhhhHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEc
Q 011244 298 LWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVIN 377 (490)
Q Consensus 298 ~WW~Yv~~f~~~C~~~~~~y~~~C~~~v~~~l~id~~ki~~C~~d~~~d~~n~iL~~e~~~q~~~~~~~~~~~~Ptl~IN 377 (490)
.||.+...+...-. ... .. +++..+-+++..++++|+.+... . ..+++....-.. .++..-||++||
T Consensus 77 ~~~~~~~~~~~~~~---~~~-~~--~~i~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~----~~i~~tPt~~in 143 (162)
T PF13462_consen 77 YFWFFHELLFSQQE---NFE-NK--KDIAANAGGSNEQFNKCLNSDEI--K-AQLEADSQLARQ----LGITGTPTFFIN 143 (162)
T ss_dssp HHHHHHHHHHHHCH---STS-SH--HHHHHHTTSHHHHHHHHHTSHHH--H-HHHHHHHHHHHH----HT-SSSSEEEET
T ss_pred HHHHHHHHHHHhhh---ccc-hh--HHHHHHcCCCHHHHHHHhhchHH--H-HHHHHHHHHHHH----cCCccccEEEEC
Confidence 68877765443321 111 12 55555556668889999864421 2 233332222112 347788999999
Q ss_pred CeeeeeccChhhHHHHh
Q 011244 378 NRQYRGKLDKGAVLKAI 394 (490)
Q Consensus 378 ~~~yrg~l~~~~vl~~i 394 (490)
|+.+.+..+.+.+...|
T Consensus 144 G~~~~~~~~~~~l~~~I 160 (162)
T PF13462_consen 144 GKYVVGPYTIEELKELI 160 (162)
T ss_dssp TCEEETTTSHHHHHHHH
T ss_pred CEEeCCCCCHHHHHHHH
Confidence 99999888887776654
No 46
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=89.87 E-value=0.75 Score=39.89 Aligned_cols=59 Identities=27% Similarity=0.595 Sum_probs=38.1
Q ss_pred chhhHhhh-ccCCCCCCceecCCC-----ceeeeeCCCcccee---------cCCeeeecCCCcccchhHHHHHHH
Q 011244 411 DVDECEEK-LACQCPECKCKDTWG-----SYECSCGSGLLYMQ---------EHDTCISKDVRSEASWGFVWMVIL 471 (490)
Q Consensus 411 didEc~~~-~~c~c~~~~c~nt~g-----~y~C~C~~~~~~~~---------~~~tC~~~~~~~~~~~~~~~~~~~ 471 (490)
..++|.+. ..|. ..-.|.+.++ =|.|.|.....-.. .+..|-.+.. +.-.|+++|..|+
T Consensus 4 S~~aC~~~Tn~Cs-gHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKkDv-S~~F~L~~~~ti~ 77 (103)
T PF12955_consen 4 SNDACENATNNCS-GHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKKDV-SVPFWLFAGFTIA 77 (103)
T ss_pred CHHHHHHhccCCC-CCceEeeccCCCccceEEEEeeccccccccccCceeeecccccccccc-cchhhHHHHHHHH
Confidence 46889886 4455 3347888853 48999997644432 3445877776 6666777776433
No 47
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=87.51 E-value=1 Score=42.46 Aligned_cols=68 Identities=13% Similarity=0.251 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCe-eeeeccChhhHHHH
Q 011244 319 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNR-QYRGKLDKGAVLKA 393 (490)
Q Consensus 319 ~~C~~~v~~~l~id~~ki~~C~~d~~~d~~n~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~-~yrg~l~~~~vl~~ 393 (490)
.+=-.++++.+|+|.+++.+++.++.. .. .|+++...-.. .++...|+++|||+ ...|-.+.+...+.
T Consensus 131 ~~~l~~~a~~~Gld~~~~~~~~~~~~~--~~-~~~~~~~~a~~----~gv~G~Pt~vv~g~~~~~G~~~~~~~~~~ 199 (201)
T cd03024 131 RDVLVDLAEEAGLDAAEARAVLASDEY--AD-EVRADEARARQ----LGISGVPFFVFNGKYAVSGAQPPEVFLQA 199 (201)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhcCccc--ch-HHHHHHHHHHH----CCCCcCCEEEECCeEeecCCCCHHHHHHH
Confidence 445667888999999999999976532 23 33333332222 34889999999986 44676666555444
No 48
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=86.46 E-value=0.87 Score=42.41 Aligned_cols=63 Identities=19% Similarity=0.294 Sum_probs=43.5
Q ss_pred HHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeeeeeccChhhHH
Q 011244 322 AEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVL 391 (490)
Q Consensus 322 ~~~v~~~l~id~~ki~~C~~d~~~d~~n~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~yrg~l~~~~vl 391 (490)
-.++++++|+|.+++++++.++. ....+-+....++ . .++...|+++|||+.|.|...-+.+.
T Consensus 126 l~~~a~~~Gld~~~~~~~~~~~~--~~~~l~~~~~~a~-~----~gi~gvPtfvv~g~~~~G~~~l~~~~ 188 (192)
T cd03022 126 LAAVAAAAGLDADELLAAADDPA--VKAALRANTEEAI-A----RGVFGVPTFVVDGEMFWGQDRLDMLE 188 (192)
T ss_pred HHHHHHHcCCCHHHHHHHcCCHH--HHHHHHHHHHHHH-H----cCCCcCCeEEECCeeecccccHHHHH
Confidence 45688899999999999986553 2333333332222 2 34889999999999999886655443
No 49
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=86.31 E-value=0.49 Score=33.42 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=21.4
Q ss_pred CCceecCC-CceeeeeCCCccceecCCeee
Q 011244 425 ECKCKDTW-GSYECSCGSGLLYMQEHDTCI 453 (490)
Q Consensus 425 ~~~c~nt~-g~y~C~C~~~~~~~~~~~tC~ 453 (490)
.+.|.|+- |+++|.|..||.. ++++|+
T Consensus 10 NA~C~~~~dG~eecrCllgyk~--~~~~C~ 37 (37)
T PF12946_consen 10 NAGCFRYDDGSEECRCLLGYKK--VGGKCV 37 (37)
T ss_dssp TEEEEEETTSEEEEEE-TTEEE--ETTEEE
T ss_pred CcccEEcCCCCEEEEeeCCccc--cCCCcC
Confidence 46798888 9999999988876 677775
No 50
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=85.33 E-value=0.56 Score=31.74 Aligned_cols=24 Identities=38% Similarity=0.843 Sum_probs=19.4
Q ss_pred cCCCCCCceecCC-CceeeeeCCCcc
Q 011244 420 ACQCPECKCKDTW-GSYECSCGSGLL 444 (490)
Q Consensus 420 ~c~c~~~~c~nt~-g~y~C~C~~~~~ 444 (490)
+|+ ....|+++. ++|.|.|+.||.
T Consensus 5 ~C~-n~g~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 5 PCQ-NGGTCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp SST-TTEEEEEESTSEEEEEEBTTEE
T ss_pred cCC-CCeEEEeCCCCCEEeECCCCCc
Confidence 444 446899999 999999999864
No 51
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=84.37 E-value=1.4 Score=40.50 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeeeeecc
Q 011244 319 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKL 385 (490)
Q Consensus 319 ~~C~~~v~~~l~id~~ki~~C~~d~~~d~~n~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~yrg~l 385 (490)
.+--.++++++|+|.+++++|+.+.. .+..++.+...-.. .++..-||++|||+.+.+-.
T Consensus 99 ~~~l~~~a~~~Gl~~~~~~~~~~s~~---~~~~i~~~~~~~~~----~gi~gTPt~iInG~~~~~~~ 158 (178)
T cd03019 99 PDDIRKIFLSQGVDKKKFDAAYNSFS---VKALVAKAEKLAKK----YKITGVPAFVVNGKYVVNPS 158 (178)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhCHH---HHHHHHHHHHHHHH----cCCCCCCeEEECCEEEEChh
Confidence 34467888899999999999986543 22345544332212 34889999999999877544
No 52
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=79.81 E-value=2.1 Score=39.80 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCe-eeeeccChhhHHHH
Q 011244 319 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNR-QYRGKLDKGAVLKA 393 (490)
Q Consensus 319 ~~C~~~v~~~l~id~~ki~~C~~d~~~d~~n~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~-~yrg~l~~~~vl~~ 393 (490)
.+=-..+++++|+|.+++.+-+.++. -...|+++....... ++...|+++|||+ .+.|.-..+.+..+
T Consensus 123 ~~vl~~~~~~~Gld~~~~~~~~~~~~---~~~~~~~~~~~a~~~----gv~GvP~~vv~g~~~~~G~~~~~~l~~~ 191 (193)
T PF01323_consen 123 PDVLAEIAEEAGLDPDEFDAALDSPE---VKAALEEDTAEARQL----GVFGVPTFVVNGKYRFFGADRLDELEDA 191 (193)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHTSHH---HHHHHHHHHHHHHHT----TCSSSSEEEETTTEEEESCSSHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHhcchH---HHHHHHHHHHHHHHc----CCcccCEEEECCEEEEECCCCHHHHHHH
Confidence 44467788999999999998886542 223444444433333 3789999999999 88888766655544
No 53
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=77.29 E-value=3.4 Score=41.94 Aligned_cols=22 Identities=27% Similarity=0.690 Sum_probs=18.5
Q ss_pred hHHHHhhcCCCCCCCCCccCCc
Q 011244 389 AVLKAICAGFQETTEPAICLSE 410 (490)
Q Consensus 389 ~vl~~iC~gf~~~~~p~~C~~~ 410 (490)
+-+.+||.||.-..|-++|...
T Consensus 192 ~~l~~iC~gyN~e~E~tVCRaS 213 (305)
T PF04639_consen 192 EELQNICQGYNYEVEKTVCRAS 213 (305)
T ss_pred HHHHHHHhccChhhhcCeeecc
Confidence 5678899999878899999865
No 54
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=76.34 E-value=0.99 Score=38.65 Aligned_cols=18 Identities=28% Similarity=0.778 Sum_probs=12.7
Q ss_pred eeCCCccceecCCeeeecCC
Q 011244 438 SCGSGLLYMQEHDTCISKDV 457 (490)
Q Consensus 438 ~C~~~~~~~~~~~tC~~~~~ 457 (490)
.|.++|.+ +.+.|+..+.
T Consensus 41 ~C~~GY~~--~~~~Cv~~st 58 (96)
T PTZ00382 41 ECNSGFSL--DNGKCVSSGA 58 (96)
T ss_pred cCcCCccc--CCCccccccc
Confidence 68888776 5678876543
No 55
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=71.72 E-value=8.1 Score=34.82 Aligned_cols=47 Identities=21% Similarity=0.415 Sum_probs=27.3
Q ss_pred CCCCCccCCc----chhhHhhhccCCCCCCcee--cCCCceeeeeCCCcccee
Q 011244 401 TTEPAICLSE----DVDECEEKLACQCPECKCK--DTWGSYECSCGSGLLYMQ 447 (490)
Q Consensus 401 ~~~p~~C~~~----didEc~~~~~c~c~~~~c~--nt~g~y~C~C~~~~~~~~ 447 (490)
++.|++-+.. ||-+|.+...--|-.-.|. -....+.|.|..||.-.+
T Consensus 27 ~~~~~~~~~~~~~~~i~~Cp~ey~~YClHG~C~yI~dl~~~~CrC~~GYtGeR 79 (139)
T PHA03099 27 TTSPEITNATTDIPAIRLCGPEGDGYCLHGDCIHARDIDGMYCRCSHGYTGIR 79 (139)
T ss_pred ecChhhccCccCCcccccCChhhCCEeECCEEEeeccCCCceeECCCCccccc
Confidence 4455554433 6677877533334222454 344688999999887654
No 56
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=68.72 E-value=3.5 Score=39.63 Aligned_cols=75 Identities=9% Similarity=0.062 Sum_probs=46.2
Q ss_pred chhhhHHHHhhhCCCcchhhhHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEc
Q 011244 298 LWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVIN 377 (490)
Q Consensus 298 ~WW~Yv~~f~~~C~~~~~~y~~~C~~~v~~~l~id~~ki~~C~~d~~~d~~n~iL~~e~~~q~~~~~~~~~~~~Ptl~IN 377 (490)
.||.+.+.+..+ . ...+..=-.++....|+|.+++++|+.++. ....++++.... .+.++..-|+++||
T Consensus 106 ~~~~lf~~i~~~---~-~~~~~~~L~~~a~~~Gld~~~f~~~l~s~~---~~~~v~~~~~~a----~~~gI~gtPtfiIn 174 (207)
T PRK10954 106 VTPPLFEGVQKT---Q-TIQSAADIRDVFIKAGVKGEDYDAAWNSFV---VKSLVAQQEKAA----ADLQLRGVPAMFVN 174 (207)
T ss_pred HHHHHHHHHHcc---C-CCCCHHHHHHHHHHcCCCHHHHHHHHhChH---HHHHHHHHHHHH----HHcCCCCCCEEEEC
Confidence 355566555332 1 223333355677889999999999996542 223444333221 12457889999999
Q ss_pred Ceeeee
Q 011244 378 NRQYRG 383 (490)
Q Consensus 378 ~~~yrg 383 (490)
|+...+
T Consensus 175 Gky~v~ 180 (207)
T PRK10954 175 GKYMVN 180 (207)
T ss_pred CEEEEc
Confidence 997764
No 57
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=64.29 E-value=7.3 Score=47.34 Aligned_cols=36 Identities=28% Similarity=0.846 Sum_probs=29.6
Q ss_pred ccCCcchhhHhhhccCCCCCCceecCCCceeeeeCCCcc
Q 011244 406 ICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLL 444 (490)
Q Consensus 406 ~C~~~didEc~~~~~c~c~~~~c~nt~g~y~C~C~~~~~ 444 (490)
.|-+ .||+|-.. +|. +...|+---|+|.|.|+++|.
T Consensus 1234 ~CeT-eiDlCYs~-pC~-nng~C~srEggYtCeCrpg~t 1269 (2531)
T KOG4289|consen 1234 YCET-EIDLCYSG-PCG-NNGRCRSREGGYTCECRPGFT 1269 (2531)
T ss_pred cccc-hhHhhhcC-CCC-CCCceEEecCceeEEecCCcc
Confidence 7776 69999864 665 556899999999999999976
No 58
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=56.37 E-value=12 Score=42.80 Aligned_cols=70 Identities=24% Similarity=0.368 Sum_probs=46.6
Q ss_pred ccCCCCCCCceEEEEeccCCCccCCCCCCCC-CccccCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCC
Q 011244 48 NFGVPQYGGTLIGTVVYPKANQKACKGFDEV-DLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDK 123 (490)
Q Consensus 48 ~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~-~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~nn~ 123 (490)
.|+.-...++.+|.+||..-+ +=..+..- ...+ +++++|+|++=|.=++..|+.||+++||.+|||+.+.
T Consensus 148 ~~~~~s~~g~~~~~~Vy~N~~--~~~d~~~l~~~~i----~~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~ 218 (702)
T KOG2195|consen 148 PFRAYSPSGSVTGELVYANYG--RIEDFYKLEDLGI----NLSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDP 218 (702)
T ss_pred chhccCcCCCccceEEEEecC--chhhhhHhhcCcc----cccCceEEEEccccchhhhHhhHHHhhcCcEEEeecc
Confidence 343324455788888885211 11111100 0112 3579999999999999999999999999999999764
No 59
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=55.77 E-value=11 Score=37.07 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=9.8
Q ss_pred HHHHHHhhhheeeEEEe
Q 011244 471 LGLAATGVAGYAFYKYR 487 (490)
Q Consensus 471 ~~~~~~~~~~y~~~~~~ 487 (490)
++|+++|+++|+|+|++
T Consensus 167 llv~l~gGGa~yYfK~~ 183 (218)
T PF14283_consen 167 LLVALIGGGAYYYFKFY 183 (218)
T ss_pred HHHHHhhcceEEEEEEe
Confidence 33334555777777765
No 60
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=54.30 E-value=15 Score=36.15 Aligned_cols=83 Identities=19% Similarity=0.412 Sum_probs=51.6
Q ss_pred hCCCcchhhhHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeeeeeccChh
Q 011244 309 RCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKG 388 (490)
Q Consensus 309 ~C~~~~~~y~~~C~~~v~~~l~id~~ki~~C~~d~~~d~~n~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~yrg~l~~~ 388 (490)
.|-+..+.+++ +.+-++..+++..+|+.|.... -+.--++++.+.. . .....+-++|.+.|||..++-.+..
T Consensus 126 ~C~~~~~~~~~--~~~C~~~~~~~~~~i~~Ca~s~--~g~~L~~~~~~~T--~-~~~p~~~~VPwi~vNg~~~~~~~~~- 197 (220)
T KOG3160|consen 126 RCIQGKQKLSE--AEDCLEKYGLNEKKIRECANSR--LGAKLLLKYAQET--A-ALAPPHPWVPWILVNGQPLQDAEQD- 197 (220)
T ss_pred hhhhcccchhH--HHHHHhhcCCCHHHHHHHhcCc--hHHHHHHHHHHhh--c-ccCCCCCCcCeEEECCcchHHHHHH-
Confidence 36655344442 1114455677799999997432 1222233332222 2 2346789999999999999866554
Q ss_pred hHHHHhhcCCCC
Q 011244 389 AVLKAICAGFQE 400 (490)
Q Consensus 389 ~vl~~iC~gf~~ 400 (490)
....+|..|++
T Consensus 198 -l~~~~C~~~~~ 208 (220)
T KOG3160|consen 198 -LVTLLCEAYKG 208 (220)
T ss_pred -HHHHHHHHHhh
Confidence 77889998873
No 61
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.87 E-value=4.8 Score=40.70 Aligned_cols=45 Identities=31% Similarity=0.664 Sum_probs=33.6
Q ss_pred chhhHhhh-ccCCCCCCceecCCCceeeeeCCCccceecCCeeeecCC
Q 011244 411 DVDECEEK-LACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISKDV 457 (490)
Q Consensus 411 didEc~~~-~~c~c~~~~c~nt~g~y~C~C~~~~~~~~~~~tC~~~~~ 457 (490)
++|||.-- ..|.-++-.|.||.|+|+|.|.++++-+. +.|+....
T Consensus 270 g~d~C~~~~d~~~~kn~~c~ni~~~~r~v~f~~~~~~~--g~cV~~~~ 315 (350)
T KOG4260|consen 270 GVDECQFCADVCASKNRPCMNIDGQYRCVCFSGLIIIE--GFCVWHGS 315 (350)
T ss_pred ChHHhhhhhhhcccCCCCcccCCccEEEEecccceeee--eeeeccCC
Confidence 58888751 34555667899999999999999887654 67776543
No 62
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=49.28 E-value=5.6 Score=40.25 Aligned_cols=18 Identities=39% Similarity=0.613 Sum_probs=0.0
Q ss_pred HHHHhhhheeeEEEeecC
Q 011244 473 LAATGVAGYAFYKYRIRV 490 (490)
Q Consensus 473 ~~~~~~~~y~~~~~~~~~ 490 (490)
|+++.|+|.+|||||=|.
T Consensus 237 LVLLaVGGLLfYr~rrRs 254 (285)
T PF05337_consen 237 LVLLAVGGLLFYRRRRRS 254 (285)
T ss_dssp ------------------
T ss_pred hhhhhccceeeecccccc
Confidence 334678899999999773
No 63
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=36.05 E-value=5.4 Score=46.41 Aligned_cols=49 Identities=12% Similarity=0.206 Sum_probs=30.6
Q ss_pred ceeeeeCCCccceecCCeeeecCCCcccch-hHHH-HHHHHHHHHhhhheeeE
Q 011244 434 SYECSCGSGLLYMQEHDTCISKDVRSEASW-GFVW-MVILGLAATGVAGYAFY 484 (490)
Q Consensus 434 ~y~C~C~~~~~~~~~~~tC~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~y~~~ 484 (490)
...|.|.+++.+ ..++|++..+.++++. +++. .|+++|+|.+++|++.|
T Consensus 750 ~~vC~C~~g~~l--~~~~c~~~~~~~~~~~~~i~~~~v~~~~vv~~lvg~lcw 800 (800)
T PTZ00214 750 QGVCMCELDAVL--TKGVCVPAKELAKKRTAAIAGGTVAGVLVIGVLVGFLCW 800 (800)
T ss_pred CCeEEeCCccee--cCCeeEecccccccccceeEEEEEEEeeeeeeeeeEeeC
Confidence 458999999977 7789998765433332 2222 23444455566777643
No 64
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=34.41 E-value=17 Score=34.98 Aligned_cols=29 Identities=31% Similarity=0.552 Sum_probs=20.1
Q ss_pred CceecCCCceeeeeCCCccceecCCeeee
Q 011244 426 CKCKDTWGSYECSCGSGLLYMQEHDTCIS 454 (490)
Q Consensus 426 ~~c~nt~g~y~C~C~~~~~~~~~~~tC~~ 454 (490)
..||++-+-|+|.|.+++....++.-+.+
T Consensus 142 E~CK~~~~~Y~C~~~~~~~~~~~~~~~~~ 170 (197)
T PF06247_consen 142 EECKLVDGYYKCVCKEGFPGDGEGEGCGG 170 (197)
T ss_dssp EEEEEETTEEEEEE-TT-EEETTT-----
T ss_pred cceeeeCcEEEeecCCCCCCCCCcccccc
Confidence 47999999999999999998877765643
No 65
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=33.18 E-value=28 Score=27.75 Aligned_cols=24 Identities=33% Similarity=0.650 Sum_probs=16.1
Q ss_pred CeEEecEEEEcCee-eeecc-ChhhH
Q 011244 367 DVTILPTLVINNRQ-YRGKL-DKGAV 390 (490)
Q Consensus 367 ~~~~~Ptl~IN~~~-yrg~l-~~~~v 390 (490)
++...|+++|||+. +.|+. +.+.+
T Consensus 46 gv~~vPalvIng~~~~~G~~p~~~el 71 (76)
T PF13192_consen 46 GVMSVPALVINGKVVFVGRVPSKEEL 71 (76)
T ss_dssp T-SSSSEEEETTEEEEESS--HHHHH
T ss_pred CCCCCCEEEECCEEEEEecCCCHHHH
Confidence 37888999999995 77844 43433
No 66
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=33.13 E-value=39 Score=31.30 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeeeee
Q 011244 321 CAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRG 383 (490)
Q Consensus 321 C~~~v~~~l~id~~ki~~C~~d~~~d~~n~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~yrg 383 (490)
=-..+++++|+|.+++.+++.++.. .. .|++++..-.. -++...||++|++..-.|
T Consensus 127 ~l~~ia~~~Gld~~~~~~~~~s~~~--~~-~l~~~~~~a~~----~gv~g~Ptfvv~~~~~~~ 182 (193)
T cd03025 127 VLRELAIELGLDVEEFLEDFQSDEA--KQ-AIQEDQKLARE----LGINGFPTLVLEDDNGEG 182 (193)
T ss_pred HHHHHHHHcCCCHHHHHHHHcChHH--HH-HHHHHHHHHHH----cCCCccCEEEEEeCCeEE
Confidence 3556788899999999999865532 33 44443332222 348899999888764333
No 67
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=32.99 E-value=95 Score=23.17 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=18.2
Q ss_pred eEEecEEEEcCeeeeeccChhhHHHH
Q 011244 368 VTILPTLVINNRQYRGKLDKGAVLKA 393 (490)
Q Consensus 368 ~~~~Ptl~IN~~~yrg~l~~~~vl~~ 393 (490)
+...|+++++|..+.| .+++.+..+
T Consensus 48 ~~~vP~~~~~~~~~~g-~~~~~i~~~ 72 (74)
T TIGR02196 48 QRGVPVIVIGHKIIVG-FDPEKLDQL 72 (74)
T ss_pred CCcccEEEECCEEEee-CCHHHHHHH
Confidence 4578999999988777 466555443
No 68
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=31.46 E-value=30 Score=37.86 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=27.6
Q ss_pred ceeeeeCCC-----ccceecCCe----eeecCCC---cccchhHHHH-HHHHHHHHhhhheeeEEEe
Q 011244 434 SYECSCGSG-----LLYMQEHDT----CISKDVR---SEASWGFVWM-VILGLAATGVAGYAFYKYR 487 (490)
Q Consensus 434 ~y~C~C~~~-----~~~~~~~~t----C~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~y~~~~~~ 487 (490)
=|-|.|+++ |.+..+.++ =...... ..+.|+.+.+ ++++++++.+++|+.||+|
T Consensus 115 ~~~CcCs~~~CN~n~s~~~~~~~~~t~~~~~~~~~~~~~~~~al~~~~~v~~l~~lvi~~~~~~r~~ 181 (534)
T KOG3653|consen 115 LYFCCCSTDFCNANFSHLPPPGPEGTPSSPDLATNDGEVLIYALIPLLLVSLLAALVILAFLGYRQR 181 (534)
T ss_pred EEEEecCCCcccCCccccCCCCCCCCCCCCCcccccCceehhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 588998876 555554431 0111000 1222333332 3455555666778888876
No 69
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=31.14 E-value=25 Score=43.14 Aligned_cols=20 Identities=30% Similarity=0.988 Sum_probs=16.9
Q ss_pred CCceecCCCceeeeeCCCcc
Q 011244 425 ECKCKDTWGSYECSCGSGLL 444 (490)
Q Consensus 425 ~~~c~nt~g~y~C~C~~~~~ 444 (490)
..+|.|-||+|.|+|+-++.
T Consensus 1512 ~g~CvnrWg~~~C~CP~~fg 1531 (2531)
T KOG4289|consen 1512 GGTCVNRWGGFSCECPLGFG 1531 (2531)
T ss_pred CCeeecccCcEeecCccccC
Confidence 35799999999999997654
No 70
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=30.30 E-value=37 Score=32.72 Aligned_cols=27 Identities=26% Similarity=0.640 Sum_probs=20.8
Q ss_pred ecCCCceeeeeCCCccceecCCeeeecC
Q 011244 429 KDTWGSYECSCGSGLLYMQEHDTCISKD 456 (490)
Q Consensus 429 ~nt~g~y~C~C~~~~~~~~~~~tC~~~~ 456 (490)
.-....|+|.|.+||.+. .++||..+.
T Consensus 14 iQMSNHfEC~Cnegfvl~-~EntCE~kv 40 (197)
T PF06247_consen 14 IQMSNHFECKCNEGFVLK-NENTCEEKV 40 (197)
T ss_dssp EEESSEEEEEESTTEEEE-ETTEEEE--
T ss_pred EEccCceEEEcCCCcEEc-cccccccce
Confidence 335679999999999997 788887754
No 71
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=30.24 E-value=56 Score=25.52 Aligned_cols=26 Identities=27% Similarity=0.561 Sum_probs=18.7
Q ss_pred eEEecEEEEcCe-eeeeccChhhHHHH
Q 011244 368 VTILPTLVINNR-QYRGKLDKGAVLKA 393 (490)
Q Consensus 368 ~~~~Ptl~IN~~-~yrg~l~~~~vl~~ 393 (490)
+...|++++||. .+.|..+.+.+...
T Consensus 51 v~~vPt~~~~g~~~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 51 IMAVPAIVINGDVEFIGAPTKEELVEA 77 (82)
T ss_pred CccCCEEEECCEEEEecCCCHHHHHHH
Confidence 677899999997 55576666655443
No 72
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=28.43 E-value=1e+02 Score=31.62 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=42.9
Q ss_pred CHHHHHHHHHhcCCcEEEEEeCCCCC------ceecCCCCCccccccccCCcceeEEEEehhhH-HHHHHHHhCCCe
Q 011244 101 YFTLKAWNAQKGGAAAILVADDKTEP------LITMDTPEEENADAEYLQNITIPSALISKSLG-DSIKKSLSGGEM 170 (490)
Q Consensus 101 sF~~Kv~nAQ~aGA~aVII~nn~~~~------l~tM~~p~d~~~~~~~~~~i~IPsv~Isk~~G-~~L~~~l~~g~~ 170 (490)
+-.++++-|+.|||.+|++-++.+.+ ..-|++|++- ..--..++||++.+-|.+- .......+.|-.
T Consensus 16 ~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I---~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvD 89 (283)
T cd04727 16 TNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMI---KEIMDAVSIPVMAKVRIGHFVEAQILEALGVD 89 (283)
T ss_pred CCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHH---HHHHHhCCCCeEEeeehhHHHHHHHHHHcCCC
Confidence 45788999999999999997765432 3355555441 1112357999999988763 333333445543
No 73
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=27.72 E-value=33 Score=35.88 Aligned_cols=40 Identities=33% Similarity=0.728 Sum_probs=31.4
Q ss_pred CccCCcchhhHhhhccCCCCCCceecCCCceeeeeCCCcccee
Q 011244 405 AICLSEDVDECEEKLACQCPECKCKDTWGSYECSCGSGLLYMQ 447 (490)
Q Consensus 405 ~~C~~~didEc~~~~~c~c~~~~c~nt~g~y~C~C~~~~~~~~ 447 (490)
..|. |+|+|.....|. ....|.++.++|.|.|+.+|.-..
T Consensus 266 ~~~~--~~~~C~~~~~c~-~~~~C~~~~~~~~C~C~~g~~g~~ 305 (487)
T KOG1217|consen 266 VTCV--DVDSCALIASCP-NGGTCVNVPGSYRCTCPPGFTGRL 305 (487)
T ss_pred ceee--eccccCCCCccC-CCCeeecCCCcceeeCCCCCCCCC
Confidence 4566 899999864344 346899999999999999976554
No 74
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=26.06 E-value=48 Score=34.64 Aligned_cols=37 Identities=38% Similarity=0.657 Sum_probs=27.5
Q ss_pred hhhHhhh-ccCCCCCCceecCCCceeeeeCCCccceecC
Q 011244 412 VDECEEK-LACQCPECKCKDTWGSYECSCGSGLLYMQEH 449 (490)
Q Consensus 412 idEc~~~-~~c~c~~~~c~nt~g~y~C~C~~~~~~~~~~ 449 (490)
.|+|... ..|+ ....|.|+.++|.|.|+.++.....+
T Consensus 169 ~~~C~~~~~~c~-~~~~C~~~~~~~~C~c~~~~~~~~~~ 206 (487)
T KOG1217|consen 169 LDECIQYSSPCQ-NGGTCVNTGGSYLCSCPPGYTGSTCE 206 (487)
T ss_pred ccccccCCCCcC-CCcccccCCCCeeEeCCCCccCCcCc
Confidence 3678743 3455 45689999999999999998776544
No 75
>COG1786 Swiveling domain associated with predicted aconitase [Energy production and conversion]
Probab=24.89 E-value=4.9e+02 Score=23.67 Aligned_cols=72 Identities=22% Similarity=0.285 Sum_probs=46.3
Q ss_pred CCCCeEEEEe--cCCCCHHHHHHHHHhcC-CcEEEEEeCCCCCceecCCCCCccccccccCCcceeEEEEehhhHHHHHH
Q 011244 87 GGLPTFLLVD--RGDCYFTLKAWNAQKGG-AAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKK 163 (490)
Q Consensus 87 ~~~g~IvLV~--RG~CsF~~Kv~nAQ~aG-A~aVII~nn~~~~l~tM~~p~d~~~~~~~~~~i~IPsv~Isk~~G~~L~~ 163 (490)
.+.|+|+++. ||.|.=.-=.+.+.+.| |=+.|| +.+.|++++.+.- --.||.+-.. + .+.+
T Consensus 48 ~l~Gkilv~P~grGStvGSyVl~~l~~~G~AP~aIv-~~e~EpIla~Gai-----------~a~iPlv~~~--~--e~~~ 111 (131)
T COG1786 48 SLTGKILVFPGGRGSTVGSYVLYELAKNGRAPAAIV-NEEAEPILAVGAI-----------LAGIPLVDGV--D--EFFE 111 (131)
T ss_pred cccceEEEeeCCCCccccHHHHHHHHHcCCCchhhh-hcCCcceeeehhh-----------hcCCceEecc--H--HHHH
Confidence 4679999886 78898777778888888 444455 4556776654311 1266755433 3 5667
Q ss_pred HHhCCCeEEEE
Q 011244 164 SLSGGEMVNMN 174 (490)
Q Consensus 164 ~l~~g~~V~v~ 174 (490)
.++.+..|.+.
T Consensus 112 ~l~~g~~v~v~ 122 (131)
T COG1786 112 ELKTGDRVRVN 122 (131)
T ss_pred HhccCCEEEEc
Confidence 88888766553
No 76
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=24.48 E-value=70 Score=32.81 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=37.4
Q ss_pred CHHHHHHHHHhcCCcEEEEEeCCC------CCceecCCCCCccccccccCCcceeEEEEehhh
Q 011244 101 YFTLKAWNAQKGGAAAILVADDKT------EPLITMDTPEEENADAEYLQNITIPSALISKSL 157 (490)
Q Consensus 101 sF~~Kv~nAQ~aGA~aVII~nn~~------~~l~tM~~p~d~~~~~~~~~~i~IPsv~Isk~~ 157 (490)
+-.++++-|++|||.||+.-...+ +...-|++|++- ..--..++||++.+-|..
T Consensus 18 ~~~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I---~~I~~~V~iPVig~~kig 77 (287)
T TIGR00343 18 VNPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMI---KEIMDAVSIPVMAKVRIG 77 (287)
T ss_pred CCHHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHH---HHHHHhCCCCEEEEeecc
Confidence 456889999999999999966543 234466666541 111235799999987765
No 77
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=23.95 E-value=85 Score=30.97 Aligned_cols=31 Identities=10% Similarity=0.110 Sum_probs=19.5
Q ss_pred cccchhHHHHH-HHHHHHHhhhheeeEEEeec
Q 011244 459 SEASWGFVWMV-ILGLAATGVAGYAFYKYRIR 489 (490)
Q Consensus 459 ~~~~~~~~~~~-~~~~~~~~~~~y~~~~~~~~ 489 (490)
...-|.+.++. +..++++++..|.++|||-|
T Consensus 29 ~~l~~~~~~~~~ii~v~v~~~~~~~~~r~r~~ 60 (226)
T TIGR01433 29 RSLILTAFGLMLLVVIPVILMTLFFAWKYRAT 60 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeEEEecc
Confidence 34445555543 34455677778999999943
No 78
>KOG4431 consensus Uncharacterized protein, induced by hypoxia [General function prediction only]
Probab=23.70 E-value=18 Score=31.19 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhhheeeEEEeec
Q 011244 468 MVILGLAATGVAGYAFYKYRIR 489 (490)
Q Consensus 468 ~~~~~~~~~~~~~y~~~~~~~~ 489 (490)
+.|++++.++++.+..||+|.|
T Consensus 32 VPlG~l~t~aal~~g~y~~r~r 53 (100)
T KOG4431|consen 32 VPLGCLGTTAALTAGLYKFRSR 53 (100)
T ss_pred eeehHHHHHHHHHHHhhhhhhc
Confidence 3466777777777889999965
No 79
>PHA03050 glutaredoxin; Provisional
Probab=23.56 E-value=1.6e+02 Score=25.36 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeeeeec
Q 011244 322 AEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGK 384 (490)
Q Consensus 322 ~~~v~~~l~id~~ki~~C~~d~~~d~~n~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~yrg~ 384 (490)
+.++++++++.....+.- +-....++.-+.+++....|+ ...|.|+|||+..-|-
T Consensus 29 ak~~L~~~~i~~~~~~~i--~i~~~~~~~~~~~~l~~~tG~------~tVP~IfI~g~~iGG~ 83 (108)
T PHA03050 29 ALDILNKFSFKRGAYEIV--DIKEFKPENELRDYFEQITGG------RTVPRIFFGKTSIGGY 83 (108)
T ss_pred HHHHHHHcCCCcCCcEEE--ECCCCCCCHHHHHHHHHHcCC------CCcCEEEECCEEEeCh
Confidence 366788888743322222 111111233334444333332 5689999999987665
No 80
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=23.09 E-value=2e+02 Score=22.23 Aligned_cols=54 Identities=11% Similarity=0.233 Sum_probs=32.4
Q ss_pred HHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeeeeeccChhhHH
Q 011244 323 EQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVL 391 (490)
Q Consensus 323 ~~v~~~l~id~~ki~~C~~d~~~d~~n~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~yrg~l~~~~vl 391 (490)
.+.+++.+++...++- + +|+-+.++... .| ....|.++|||...-+..+++.+-
T Consensus 16 k~~L~~~~i~~~~~di-------~-~~~~~~~~~~~-~g------~~~vP~v~~~g~~~~~G~~~~~~~ 69 (72)
T TIGR02194 16 KKALEEHGIAFEEINI-------D-EQPEAIDYVKA-QG------FRQVPVIVADGDLSWSGFRPDKLK 69 (72)
T ss_pred HHHHHHCCCceEEEEC-------C-CCHHHHHHHHH-cC------CcccCEEEECCCcEEeccCHHHHH
Confidence 5677888887655421 1 23333444332 23 256899999998666667766553
No 81
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=22.98 E-value=34 Score=39.28 Aligned_cols=37 Identities=35% Similarity=0.911 Sum_probs=29.8
Q ss_pred HhhhccCCCCCCceecCCCceeeeeCCCccceecCCeeeecCC
Q 011244 415 CEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTCISKDV 457 (490)
Q Consensus 415 c~~~~~c~c~~~~c~nt~g~y~C~C~~~~~~~~~~~tC~~~~~ 457 (490)
|.+...|.|..|.|.--|-+..|.|+ .+.++|++..+
T Consensus 557 C~g~G~C~CG~CvC~~GwtG~~C~C~------~std~C~~~~G 593 (783)
T KOG1226|consen 557 CGGHGRCECGRCVCNPGWTGSACNCP------LSTDTCESSDG 593 (783)
T ss_pred cCCCCeEeCCcEEcCCCCccCCCCCC------CCCccccCCCC
Confidence 67778899999999999999999998 45556665544
No 82
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=22.27 E-value=2.2e+02 Score=23.04 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=32.4
Q ss_pred HHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeeeeeccChhh
Q 011244 322 AEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGA 389 (490)
Q Consensus 322 ~~~v~~~l~id~~ki~~C~~d~~~d~~n~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~yrg~l~~~~ 389 (490)
+.+.+.+.|++-..++-=. ..+-..++.... +. +....|.|+||+...-|.-+..+
T Consensus 17 ak~~L~~~g~~~~~i~~~~-------~~~~~~~~~~~~-~~----g~~tvP~I~i~~~~igg~~d~~~ 72 (80)
T COG0695 17 AKRLLDRKGVDYEEIDVDD-------DEPEEAREMVKR-GK----GQRTVPQIFIGGKHVGGCDDLDA 72 (80)
T ss_pred HHHHHHHcCCCcEEEEecC-------CcHHHHHHHHHH-hC----CCCCcCEEEECCEEEeCcccHHH
Confidence 4678888888877665442 121111122222 21 24789999999997766544433
No 83
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.06 E-value=1.7e+02 Score=28.38 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=22.5
Q ss_pred CeEEecEEEEcCeeeeeccChhhHHHHh
Q 011244 367 DVTILPTLVINNRQYRGKLDKGAVLKAI 394 (490)
Q Consensus 367 ~~~~~Ptl~IN~~~yrg~l~~~~vl~~i 394 (490)
++..-||++|||..|.|..+.+.+...|
T Consensus 212 gv~gTPt~~v~~~~~~g~~~~~~l~~~i 239 (244)
T COG1651 212 GVNGTPTFIVNGKLVPGLPDLDELKAII 239 (244)
T ss_pred CCCcCCeEEECCeeecCCCCHHHHHHHH
Confidence 4788899999999999998866655443
No 84
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=21.68 E-value=33 Score=29.69 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=10.6
Q ss_pred HHHHHHHhhhheeeEEEee
Q 011244 470 ILGLAATGVAGYAFYKYRI 488 (490)
Q Consensus 470 ~~~~~~~~~~~y~~~~~~~ 488 (490)
+++|+++++=+-+.||||+
T Consensus 30 ~SlLIalaaKC~~~~k~~~ 48 (102)
T PF15176_consen 30 TSLLIALAAKCPVWYKYLA 48 (102)
T ss_pred HHHHHHHHHHhHHHHHHHh
Confidence 3333344444777788764
No 85
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=21.68 E-value=79 Score=32.39 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhheeeEEEeec
Q 011244 469 VILGLAATGVAGYAFYKYRIR 489 (490)
Q Consensus 469 ~~~~~~~~~~~~y~~~~~~~~ 489 (490)
+|++|+++.+++|+++|-|=|
T Consensus 280 ~La~lvlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 280 ALAGLVLIVLIAYLIGRRRSR 300 (306)
T ss_pred HHHHHHHHHHHhheeEecccc
Confidence 466666777888999998854
No 86
>CHL00020 psbN photosystem II protein N
Probab=21.07 E-value=1e+02 Score=22.66 Aligned_cols=17 Identities=24% Similarity=0.555 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhheeeEE
Q 011244 469 VILGLAATGVAGYAFYK 485 (490)
Q Consensus 469 ~~~~~~~~~~~~y~~~~ 485 (490)
|....+++++-||++|-
T Consensus 9 i~i~~ll~~~Tgy~iYt 25 (43)
T CHL00020 9 IFISGLLVSFTGYALYT 25 (43)
T ss_pred HHHHHHHHHhhheeeee
Confidence 33333346778899884
No 87
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=20.98 E-value=67 Score=23.90 Aligned_cols=19 Identities=21% Similarity=0.702 Sum_probs=15.2
Q ss_pred eeeCCCccceecCCeeeecC
Q 011244 437 CSCGSGLLYMQEHDTCISKD 456 (490)
Q Consensus 437 C~C~~~~~~~~~~~tC~~~~ 456 (490)
|.|+.||++..+ ++||...
T Consensus 35 C~C~~G~v~~~~-~~CV~~~ 53 (55)
T PF01826_consen 35 CFCPPGYVRNDN-GRCVPPS 53 (55)
T ss_dssp EEETTTEEEETT-SEEEEGG
T ss_pred CCCCCCeeEcCC-CCEEcHH
Confidence 999999987555 7999764
No 88
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=20.80 E-value=1e+02 Score=22.90 Aligned_cols=12 Identities=17% Similarity=0.576 Sum_probs=8.6
Q ss_pred HHHhhhheeeEE
Q 011244 474 AATGVAGYAFYK 485 (490)
Q Consensus 474 ~~~~~~~y~~~~ 485 (490)
+++++-||++|-
T Consensus 17 lL~~~TgyaiYt 28 (46)
T PRK13183 17 ILLALTGFGIYT 28 (46)
T ss_pred HHHHHhhheeee
Confidence 346777899884
No 89
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=20.80 E-value=2.1e+02 Score=22.16 Aligned_cols=48 Identities=17% Similarity=0.361 Sum_probs=29.1
Q ss_pred HHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhcCCCCCCeEEecEEEEcCeeeee
Q 011244 322 AEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRG 383 (490)
Q Consensus 322 ~~~v~~~l~id~~ki~~C~~d~~~d~~n~iL~~e~~~q~~~~~~~~~~~~Ptl~IN~~~yrg 383 (490)
+.+.+++.+++...++ . + .++-..+++....+. ...|.++|||..+-|
T Consensus 17 a~~~L~~~gi~~~~~d-i------~-~~~~~~~el~~~~g~------~~vP~v~i~~~~iGg 64 (73)
T cd03027 17 VRLFLREKGLPYVEIN-I------D-IFPERKAELEERTGS------SVVPQIFFNEKLVGG 64 (73)
T ss_pred HHHHHHHCCCceEEEE-C------C-CCHHHHHHHHHHhCC------CCcCEEEECCEEEeC
Confidence 4667888888866552 2 1 223344455444443 456999999976643
No 90
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=20.37 E-value=43 Score=39.94 Aligned_cols=89 Identities=24% Similarity=0.564 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHhcCCCCCCeEEecE-----------------EEEcCeeeeeccChhhHHHHhhcCCCCCCCCCccCC
Q 011244 347 VDNQVLKTEQDAQIGKGSRGDVTILPT-----------------LVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLS 409 (490)
Q Consensus 347 ~~n~iL~~e~~~q~~~~~~~~~~~~Pt-----------------l~IN~~~yrg~l~~~~vl~~iC~gf~~~~~p~~C~~ 409 (490)
++.+||+-|-...+|..-++ ..||+ |+|||+.-. +++.=+.-....--|.|.
T Consensus 551 G~s~iL~ld~~mylG~~~n~--l~~P~~vWta~L~~GyvGCirdl~i~G~s~d--------i~q~ae~q~sagvkpsCs- 619 (1591)
T KOG3514|consen 551 GDSEILDLDDPMYLGEVPNN--LVYPSEVWTAALRKGYVGCIRDLFIDGVSTD--------IRQEAEAQNSAGVKPSCS- 619 (1591)
T ss_pred CcceeEeecCceeeccCCCC--ccCcHHHHHHHHhccchheehhheecceehh--------hHHHhhhccccccCcccc-
Q ss_pred cchhh--HhhhccCCCCCCceecCCCceeeeeCCCccceecCCee
Q 011244 410 EDVDE--CEEKLACQCPECKCKDTWGSYECSCGSGLLYMQEHDTC 452 (490)
Q Consensus 410 ~didE--c~~~~~c~c~~~~c~nt~g~y~C~C~~~~~~~~~~~tC 452 (490)
--+| |+.. +|+ ...+|+.-|..|.|-|+ +-.| .+++|
T Consensus 620 -~~~~~~C~~n-PC~-N~g~C~egwNrfiCDCs-~T~~--~G~~C 658 (1591)
T KOG3514|consen 620 -LSNEKICESN-PCQ-NGGKCSEGWNRFICDCS-GTGF--EGRTC 658 (1591)
T ss_pred -hhhccccCCC-ccc-CCCCccccccccccccc-cCcc--cCccc
No 91
>PHA03049 IMV membrane protein; Provisional
Probab=20.16 E-value=52 Score=26.33 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhheeeEE
Q 011244 466 VWMVILGLAATGVAGYAFYK 485 (490)
Q Consensus 466 ~~~~~~~~~~~~~~~y~~~~ 485 (490)
+++++.|+++.|+.-|++|.
T Consensus 5 ~~l~iICVaIi~lIvYgiYn 24 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45677788888888898885
No 92
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=20.00 E-value=1.1e+02 Score=23.71 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=13.5
Q ss_pred hhHhHHHHhh-cccceeeEEEee
Q 011244 6 GFLVGILFLL-CGLSFGRFVVEK 27 (490)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~fvve~ 27 (490)
++++++++++ +.++.|++||-.
T Consensus 4 i~~~~~~~~~~~~~a~AQWvV~D 26 (55)
T PF13605_consen 4 ILMLCVACLLLAGPARAQWVVTD 26 (55)
T ss_pred hHHHHHHHHhcCCcceeEEEEeC
Confidence 4444444444 678899999543
Done!