BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011245
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 73 DWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKI 132
D+Y IL ++R S E + YR+LAL P++N P A +FK + A+++LSNP ++
Sbjct: 8 DYYEILGVSRGA-SDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRK 66
Query: 133 MYD 135
YD
Sbjct: 67 QYD 69
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 68 GNQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSN 127
G++ D+YAI+ + + T ++ I T YR+LA P+ ++ P A+ FK V +AW +LS+
Sbjct: 1 GSELKDYYAIMGV-KPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSD 59
Query: 128 PARKIMYD 135
R+ YD
Sbjct: 60 EQRRAEYD 67
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 73 DWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKI 132
D+Y L LAR S E I YR+ AL P++N+ P A+ FK + +A+ +LS+P ++
Sbjct: 4 DYYQTLGLARGA-SDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 133 MYD 135
++D
Sbjct: 63 IFD 65
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 57 IAGESIIITSNGNQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFK 116
+ E++ SN + D+YAIL + + T ++ I T YR+LA P+ ++ A+ FK
Sbjct: 13 LGTENLYFQSNAMELKDYYAILGV-QPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFK 71
Query: 117 LVYDAWSILSNPARKIMYD 135
+ +AW +L + R+ YD
Sbjct: 72 DLAEAWEVLKDEQRRAEYD 90
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 73 DWYAILQLARFTHSIELIATQYRKLALLLSPERN--RFPFADRSFKLVYDAWSILSNPAR 130
D+Y +L + R S E I YRKLAL P++N A+R FK V +A+ +LS+ +
Sbjct: 10 DYYEVLDVPRQASS-EAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 131 KIMYD 135
+ +YD
Sbjct: 69 RDIYD 73
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 58 AGESIIITSNGNQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKL 117
+G S I+ S D Y +L ++R T S I Y+KLA P++N+ P A+ F
Sbjct: 3 SGSSGILQSLSALDFDPYRVLGVSR-TASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQ 61
Query: 118 VYDAWSILSNPARKIMYD 135
+ A+ ILSN ++ YD
Sbjct: 62 ISKAYEILSNEEKRTNYD 79
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 65 TSNGNQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERN--RFPFADRSFKLVYDAW 122
+S + ++Y +L + + + S E I YRKLAL P++N A++ FKLV +A+
Sbjct: 2 SSGSSGMANYYEVLGV-QASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAY 60
Query: 123 SILSNPARKIMYD 135
+LS+ ++ +YD
Sbjct: 61 EVLSDSKKRSLYD 73
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 74 WYAILQLARFTHSIELIATQYRKLALLLSPERN--RFPFADRSFKLVYDAWSILSNPARK 131
+Y IL + R + S + I YR+ AL P++N FA++ FK V +A+ +LS+ ++
Sbjct: 4 YYEILDVPR-SASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 132 IMYD 135
+YD
Sbjct: 63 EIYD 66
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 35.8 bits (81), Expect = 0.059, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 74 WYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIM 133
+Y IL + + + S I + KLA+ P++N+ P A+ F+ + +A+ LS+ R+
Sbjct: 9 YYDILGVPK-SASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKE 67
Query: 134 YDT 136
YDT
Sbjct: 68 YDT 70
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 88 ELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYD 135
E + YRKLAL P++N P FK + A+ +LS+ ++ +YD
Sbjct: 21 EELKKAYRKLALKYHPDKN--PNEGEKFKQISQAYEVLSDAKKRELYD 66
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF-PFADRSFKLVYDAWSILSNPAR 130
D+Y IL +++ E I Y++LA+ P+RN+ A+ FK + +A+ +L++ +
Sbjct: 3 QDYYEILGVSKTAEERE-IRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 131 KIMYD 135
+ YD
Sbjct: 62 RAAYD 66
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF-PFADRSFKLVYDAWSILSNPAR 130
D+Y IL +++ E I Y++LA+ P+RN+ A+ FK + +A+ +L++ +
Sbjct: 3 QDYYEILGVSKTAEERE-IRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 131 KIMYD 135
+ YD
Sbjct: 62 RAAYD 66
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 94 YRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYD 135
YRK+AL P++N P FK + A+ +LS+ ++ +YD
Sbjct: 29 YRKMALKFHPDKN--PDGAEQFKQISQAYEVLSDEKKRQIYD 68
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 74 WYAILQLARFTHSIELIATQYRKLALLLSPERN-RFPFADRSFKLVYDAWSILSNPARKI 132
Y +L L + S + I YRKLAL P++N P A FK + +A +IL++ ++
Sbjct: 19 LYHVLGLDKNATSDD-IKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN 77
Query: 133 MYD 135
+YD
Sbjct: 78 IYD 80
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF-PFADRSFKLVYDAWSILSNPAR 130
D+Y IL +++ E I Y++LA+ P+RN+ A+ FK + +A+ +L++ +
Sbjct: 3 QDYYEILGVSKTAEERE-IRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 131 KIMYD 135
+ YD
Sbjct: 62 RAAYD 66
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 73 DWYAILQLARFTHSIELIATQYRKLALLLSPERNRF-PFADRSFKLVYDAWSILSNPARK 131
D+Y IL + R E I Y +LA P+ N+ P A F + +A+ +LS+ ++
Sbjct: 8 DYYQILGVPRNASQKE-IKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKR 66
Query: 132 IMYDT 136
YD
Sbjct: 67 KQYDA 71
>pdb|3GOZ|A Chain A, Crystal Structure Of The Leucine-Rich Repeat-Containing
Protein Legl7 From Legionella Pneumophila. Northeast
Structural Genomics Consortium Target Lgr148
Length = 362
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 429 GLDLNVEFSNELEEPMAAVPPRMNPENGMEDNIDGVFFEGLDEFLSSLP 477
G DL ++ S+EL + +AA+P +N N +N+ L +FL+S+P
Sbjct: 147 GNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 94 YRKLALLLSPERNRFPFAD-RSFKLVYDAWSILSNPARKIMYD 135
YRK AL P++ P D FK + +A+ IL++P ++ +YD
Sbjct: 29 YRKAALKYHPDK---PTGDTEKFKEISEAFEILNDPQKREIYD 68
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 73 DWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFAD----------RSFKLVYDAW 122
DWY+IL A + ++ + +Y+KL LL P++ AD + F + AW
Sbjct: 17 DWYSILG-ADPSANMSDLKQKYQKLILLYHPDKQS---ADVPAGTMEECMQKFIEIDQAW 72
Query: 123 SILSNPARKIMYD 135
IL N K YD
Sbjct: 73 KILGNEETKKKYD 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,105,453
Number of Sequences: 62578
Number of extensions: 429450
Number of successful extensions: 830
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 817
Number of HSP's gapped (non-prelim): 20
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)