Query 011245
Match_columns 490
No_of_seqs 368 out of 2014
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 23:12:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.8 2E-21 4.4E-26 200.8 7.4 71 71-142 3-74 (371)
2 KOG0713 Molecular chaperone (D 99.8 9.2E-20 2E-24 185.3 7.2 73 69-142 13-86 (336)
3 PRK14288 chaperone protein Dna 99.7 3.6E-18 7.7E-23 177.0 7.6 68 72-140 3-71 (369)
4 PRK14296 chaperone protein Dna 99.7 3.7E-18 7.9E-23 177.2 7.5 69 71-140 3-71 (372)
5 PRK14279 chaperone protein Dna 99.7 2.2E-17 4.8E-22 172.4 7.4 68 71-139 8-76 (392)
6 PRK14287 chaperone protein Dna 99.7 5.6E-17 1.2E-21 168.3 7.7 69 71-140 3-71 (371)
7 PRK14286 chaperone protein Dna 99.7 5.4E-17 1.2E-21 168.4 7.6 69 71-140 3-72 (372)
8 PRK14276 chaperone protein Dna 99.7 6.3E-17 1.4E-21 168.3 7.6 69 71-140 3-71 (380)
9 KOG0624 dsRNA-activated protei 99.7 2.3E-16 5E-21 161.8 11.4 124 6-139 337-464 (504)
10 PRK14299 chaperone protein Dna 99.7 7.9E-17 1.7E-21 162.1 7.6 69 71-140 3-71 (291)
11 PRK14298 chaperone protein Dna 99.7 7.6E-17 1.7E-21 167.7 7.7 69 71-140 4-72 (377)
12 PRK14283 chaperone protein Dna 99.7 8.7E-17 1.9E-21 167.1 7.6 69 71-140 4-72 (378)
13 PRK14291 chaperone protein Dna 99.7 9.6E-17 2.1E-21 167.0 7.7 69 72-141 3-71 (382)
14 KOG0712 Molecular chaperone (D 99.7 7.4E-17 1.6E-21 165.2 6.4 69 71-142 3-71 (337)
15 PRK14278 chaperone protein Dna 99.7 8.2E-17 1.8E-21 167.4 6.3 67 72-139 3-69 (378)
16 PRK14280 chaperone protein Dna 99.7 1.2E-16 2.7E-21 165.9 7.6 68 72-140 4-71 (376)
17 PF00226 DnaJ: DnaJ domain; I 99.7 1.6E-16 3.5E-21 124.6 6.2 62 73-135 1-64 (64)
18 PRK14282 chaperone protein Dna 99.6 1.6E-16 3.6E-21 164.5 7.4 69 71-140 3-73 (369)
19 PTZ00037 DnaJ_C chaperone prot 99.6 1.4E-16 3E-21 168.1 6.9 66 71-140 27-92 (421)
20 PRK14277 chaperone protein Dna 99.6 2.3E-16 5E-21 164.4 8.0 69 71-140 4-73 (386)
21 PRK14285 chaperone protein Dna 99.6 2.1E-16 4.6E-21 163.6 7.6 68 72-140 3-71 (365)
22 PRK14294 chaperone protein Dna 99.6 3.1E-16 6.7E-21 162.3 7.6 69 71-140 3-72 (366)
23 PRK14284 chaperone protein Dna 99.6 3.6E-16 7.9E-21 163.2 7.4 68 72-140 1-69 (391)
24 PRK14295 chaperone protein Dna 99.6 3.8E-16 8.3E-21 163.1 7.6 65 71-136 8-73 (389)
25 PRK14301 chaperone protein Dna 99.6 3.7E-16 8.1E-21 162.3 7.2 69 71-140 3-72 (373)
26 PRK14297 chaperone protein Dna 99.6 3.6E-16 7.8E-21 162.6 6.9 68 72-140 4-72 (380)
27 PRK10767 chaperone protein Dna 99.6 6.8E-16 1.5E-20 159.9 7.4 69 71-140 3-72 (371)
28 TIGR02349 DnaJ_bact chaperone 99.6 8.4E-16 1.8E-20 158.0 7.4 67 73-140 1-67 (354)
29 PRK14281 chaperone protein Dna 99.6 7.5E-16 1.6E-20 161.2 7.0 68 72-140 3-71 (397)
30 PRK10266 curved DNA-binding pr 99.6 1.3E-15 2.7E-20 154.3 7.4 67 72-139 4-70 (306)
31 PRK14300 chaperone protein Dna 99.6 1.2E-15 2.6E-20 158.4 7.4 68 72-140 3-70 (372)
32 PRK14292 chaperone protein Dna 99.6 1.3E-15 2.8E-20 157.8 7.4 68 72-140 2-69 (371)
33 KOG0691 Molecular chaperone (D 99.6 1.5E-15 3.2E-20 153.8 7.2 70 71-141 4-74 (296)
34 PRK14293 chaperone protein Dna 99.6 1.5E-15 3.3E-20 157.6 7.4 68 72-140 3-70 (374)
35 KOG0717 Molecular chaperone (D 99.6 1.6E-15 3.4E-20 159.4 6.7 70 69-139 5-76 (508)
36 KOG0550 Molecular chaperone (D 99.6 5.5E-15 1.2E-19 154.1 10.3 120 11-141 322-443 (486)
37 KOG0716 Molecular chaperone (D 99.6 2.2E-15 4.8E-20 149.8 7.0 70 71-141 30-100 (279)
38 PRK14290 chaperone protein Dna 99.6 2.2E-15 4.8E-20 156.0 7.3 68 72-140 3-72 (365)
39 KOG0715 Molecular chaperone (D 99.6 2.7E-15 5.9E-20 151.4 7.5 71 70-141 41-111 (288)
40 PRK14289 chaperone protein Dna 99.6 3.1E-15 6.7E-20 155.8 7.9 69 71-140 4-73 (386)
41 KOG0720 Molecular chaperone (D 99.6 1.1E-15 2.4E-20 160.5 4.0 70 69-139 232-301 (490)
42 smart00271 DnaJ DnaJ molecular 99.5 1.2E-14 2.6E-19 112.0 6.5 57 72-129 1-59 (60)
43 KOG0718 Molecular chaperone (D 99.5 8E-15 1.7E-19 154.3 6.7 71 70-141 7-81 (546)
44 PTZ00341 Ring-infected erythro 99.5 1.4E-14 3.1E-19 162.9 7.9 72 69-141 570-641 (1136)
45 cd06257 DnaJ DnaJ domain or J- 99.5 3.1E-14 6.6E-19 107.8 6.6 54 73-127 1-55 (55)
46 KOG0719 Molecular chaperone (D 99.5 2.5E-14 5.4E-19 140.0 6.5 72 69-141 11-85 (264)
47 COG2214 CbpA DnaJ-class molecu 99.5 5.1E-14 1.1E-18 128.7 7.2 68 70-138 4-73 (237)
48 TIGR03835 termin_org_DnaJ term 99.4 3.2E-13 6.9E-18 149.4 7.8 68 72-140 2-69 (871)
49 KOG0721 Molecular chaperone (D 99.4 8.6E-13 1.9E-17 128.1 7.5 70 69-139 96-166 (230)
50 PRK05014 hscB co-chaperone Hsc 99.3 5.2E-12 1.1E-16 118.9 7.8 68 72-139 1-75 (171)
51 PRK01356 hscB co-chaperone Hsc 99.3 9.2E-12 2E-16 116.9 7.6 68 72-139 2-74 (166)
52 PHA03102 Small T antigen; Revi 99.3 6.6E-12 1.4E-16 116.8 6.0 66 72-140 5-71 (153)
53 KOG0714 Molecular chaperone (D 99.2 6.1E-12 1.3E-16 120.9 4.9 68 71-139 2-71 (306)
54 PRK00294 hscB co-chaperone Hsc 99.2 2.2E-11 4.8E-16 115.2 7.9 70 70-139 2-78 (173)
55 PRK03578 hscB co-chaperone Hsc 99.2 3.7E-11 7.9E-16 113.9 7.8 69 71-139 5-80 (176)
56 KOG0722 Molecular chaperone (D 99.2 1.3E-11 2.8E-16 122.5 4.3 70 69-139 30-99 (329)
57 PHA02624 large T antigen; Prov 99.1 6.3E-10 1.4E-14 122.1 10.6 61 71-134 10-71 (647)
58 PRK09430 djlA Dna-J like membr 99.0 7.8E-10 1.7E-14 110.9 9.5 56 71-127 199-262 (267)
59 PTZ00100 DnaJ chaperone protei 99.0 3.9E-10 8.5E-15 100.7 5.9 52 71-126 64-115 (116)
60 KOG1150 Predicted molecular ch 98.8 4.2E-09 9.1E-14 101.8 5.6 64 71-135 52-117 (250)
61 PRK01773 hscB co-chaperone Hsc 98.8 1.3E-08 2.8E-13 96.5 7.5 68 72-139 2-76 (173)
62 TIGR00714 hscB Fe-S protein as 98.7 1.6E-08 3.4E-13 94.3 6.6 55 85-139 3-63 (157)
63 COG5407 SEC63 Preprotein trans 98.7 2.3E-08 5E-13 105.9 6.7 69 70-139 96-170 (610)
64 COG5269 ZUO1 Ribosome-associat 98.5 9.6E-08 2.1E-12 96.1 5.8 70 69-139 40-115 (379)
65 KOG1789 Endocytosis protein RM 97.9 2.2E-05 4.8E-10 90.1 8.1 54 71-126 1280-1336(2235)
66 KOG0568 Molecular chaperone (D 97.7 6.1E-05 1.3E-09 74.9 5.8 56 72-128 47-103 (342)
67 KOG0723 Molecular chaperone (D 96.7 0.0026 5.6E-08 56.6 5.3 49 76-128 60-108 (112)
68 KOG3192 Mitochondrial J-type c 96.3 0.0055 1.2E-07 57.9 5.0 71 69-139 5-82 (168)
69 KOG0431 Auxilin-like protein a 96.2 0.0073 1.6E-07 65.4 6.0 41 86-126 401-449 (453)
70 TIGR02098 MJ0042_CXXC MJ0042 f 95.6 0.0071 1.5E-07 43.4 1.8 33 238-270 3-38 (38)
71 COG1076 DjlA DnaJ-domain-conta 94.8 0.081 1.8E-06 50.1 6.8 55 70-125 111-173 (174)
72 PF13719 zinc_ribbon_5: zinc-r 94.1 0.031 6.8E-07 40.5 1.8 32 238-269 3-37 (37)
73 COG1076 DjlA DnaJ-domain-conta 92.7 0.074 1.6E-06 50.4 2.3 67 73-139 2-75 (174)
74 PF07719 TPR_2: Tetratricopept 92.1 0.4 8.7E-06 32.0 4.8 33 10-42 1-33 (34)
75 PF13717 zinc_ribbon_4: zinc-r 90.8 0.14 3E-06 37.1 1.5 31 238-268 3-36 (36)
76 PF00515 TPR_1: Tetratricopept 90.1 0.8 1.7E-05 30.9 4.8 33 10-42 1-33 (34)
77 PF13428 TPR_14: Tetratricopep 88.4 1.2 2.6E-05 32.4 5.0 39 12-50 3-41 (44)
78 PF13414 TPR_11: TPR repeat; P 87.5 0.81 1.7E-05 35.3 3.8 38 9-46 2-39 (69)
79 KOG0624 dsRNA-activated protei 84.1 8.2 0.00018 41.6 10.2 114 4-125 32-159 (504)
80 PRK00464 nrdR transcriptional 83.0 0.67 1.4E-05 43.8 1.7 35 239-273 2-44 (154)
81 PF14205 Cys_rich_KTR: Cystein 82.9 0.65 1.4E-05 37.0 1.3 34 235-268 2-39 (55)
82 PRK11827 hypothetical protein; 82.3 0.73 1.6E-05 37.3 1.4 29 238-268 9-37 (60)
83 PF03656 Pam16: Pam16; InterP 82.0 3.4 7.3E-05 38.0 5.8 53 73-129 59-111 (127)
84 PF13181 TPR_8: Tetratricopept 80.8 3.1 6.6E-05 27.9 3.9 32 10-41 1-32 (34)
85 PF14853 Fis1_TPR_C: Fis1 C-te 79.8 5.4 0.00012 31.3 5.4 46 13-58 4-49 (53)
86 KOG0553 TPR repeat-containing 79.6 6.2 0.00013 41.2 7.3 40 6-45 77-116 (304)
87 PRK00398 rpoP DNA-directed RNA 78.4 1.1 2.5E-05 33.5 1.3 29 239-269 5-33 (46)
88 PF13432 TPR_16: Tetratricopep 77.2 3.6 7.9E-05 31.4 3.8 39 14-52 1-39 (65)
89 KOG1924 RhoA GTPase effector D 76.9 59 0.0013 38.4 14.5 31 70-100 400-430 (1102)
90 COG2835 Uncharacterized conser 75.7 1.5 3.2E-05 35.6 1.3 29 238-268 9-37 (60)
91 KOG1830 Wiskott Aldrich syndro 75.6 32 0.00069 37.8 11.4 18 338-355 499-517 (518)
92 PF10475 DUF2450: Protein of u 74.6 14 0.0003 37.7 8.2 86 11-128 128-213 (291)
93 smart00531 TFIIE Transcription 74.4 1.4 3.1E-05 40.6 1.0 32 239-270 101-136 (147)
94 PRK05654 acetyl-CoA carboxylas 73.7 1.7 3.6E-05 45.0 1.4 34 234-268 24-57 (292)
95 COG0777 AccD Acetyl-CoA carbox 73.6 1.4 3E-05 45.5 0.8 34 234-268 25-58 (294)
96 PF03704 BTAD: Bacterial trans 73.6 13 0.00027 33.0 6.9 38 12-49 64-101 (146)
97 PF13174 TPR_6: Tetratricopept 73.4 6.3 0.00014 25.8 3.8 31 12-42 2-32 (33)
98 TIGR00515 accD acetyl-CoA carb 73.1 1.5 3.3E-05 45.1 1.0 34 234-268 23-56 (285)
99 PRK10866 outer membrane biogen 72.9 39 0.00085 33.6 10.8 39 9-47 31-69 (243)
100 CHL00174 accD acetyl-CoA carbo 72.7 1.6 3.4E-05 45.4 1.0 34 234-268 35-68 (296)
101 PF14863 Alkyl_sulf_dimr: Alky 70.1 5.9 0.00013 36.9 4.0 48 10-57 70-117 (141)
102 PF13414 TPR_11: TPR repeat; P 70.1 6.4 0.00014 30.2 3.7 36 6-41 33-69 (69)
103 KOG0724 Zuotin and related mol 69.9 4.7 0.0001 41.6 3.7 54 86-139 5-63 (335)
104 smart00028 TPR Tetratricopepti 68.7 9.5 0.00021 22.7 3.6 31 12-42 3-33 (34)
105 PF13371 TPR_9: Tetratricopept 68.6 10 0.00022 29.3 4.5 40 10-49 29-68 (73)
106 PLN03088 SGT1, suppressor of 67.5 16 0.00034 38.3 7.0 42 11-52 3-44 (356)
107 COG1379 PHP family phosphoeste 66.9 1.5 3.3E-05 46.2 -0.5 35 233-268 242-276 (403)
108 TIGR02552 LcrH_SycD type III s 66.2 80 0.0017 26.9 10.1 45 6-50 13-57 (135)
109 PF13176 TPR_7: Tetratricopept 65.8 12 0.00025 26.2 3.9 28 13-40 2-29 (36)
110 PF14559 TPR_19: Tetratricopep 65.4 9 0.0002 29.2 3.6 31 20-50 1-31 (68)
111 PF03966 Trm112p: Trm112p-like 64.5 2.7 5.9E-05 34.0 0.6 17 252-268 48-64 (68)
112 PF13432 TPR_16: Tetratricopep 64.0 15 0.00033 27.9 4.6 36 8-43 29-64 (65)
113 PF14559 TPR_19: Tetratricopep 63.2 11 0.00023 28.7 3.7 42 9-50 24-65 (68)
114 KOG1924 RhoA GTPase effector D 61.7 11 0.00025 43.9 4.9 18 410-427 688-705 (1102)
115 KOG3824 Huntingtin interacting 61.4 21 0.00046 38.1 6.5 42 4-45 110-151 (472)
116 PF10263 SprT-like: SprT-like 61.2 4.9 0.00011 36.5 1.7 37 234-270 120-156 (157)
117 PF12238 MSA-2c: Merozoite sur 61.1 99 0.0022 30.9 10.7 13 86-98 82-94 (205)
118 COG3063 PilF Tfp pilus assembl 60.9 35 0.00075 34.9 7.7 44 7-50 31-75 (250)
119 TIGR02795 tol_pal_ybgF tol-pal 60.8 23 0.0005 29.0 5.5 34 10-43 2-35 (119)
120 TIGR01053 LSD1 zinc finger dom 60.7 4.8 0.0001 28.5 1.1 24 239-264 3-26 (31)
121 PRK15174 Vi polysaccharide exp 59.5 73 0.0016 36.2 10.8 122 13-138 287-417 (656)
122 PF06943 zf-LSD1: LSD1 zinc fi 59.3 4.8 0.0001 27.4 0.9 23 240-264 1-23 (25)
123 PF08996 zf-DNA_Pol: DNA Polym 56.7 4.5 9.7E-05 38.9 0.6 38 233-270 14-58 (188)
124 COG1096 Predicted RNA-binding 54.9 6.6 0.00014 38.5 1.4 30 235-268 147-176 (188)
125 TIGR03504 FimV_Cterm FimV C-te 54.9 24 0.00052 26.7 4.2 25 14-38 3-27 (44)
126 PF14369 zf-RING_3: zinc-finge 54.6 7.5 0.00016 28.1 1.3 31 235-268 2-32 (35)
127 PF11331 DUF3133: Protein of u 53.8 8.9 0.00019 29.6 1.7 31 237-267 6-41 (46)
128 TIGR02795 tol_pal_ybgF tol-pal 53.7 31 0.00068 28.2 5.2 34 11-44 40-73 (119)
129 PRK06266 transcription initiat 53.4 5.8 0.00013 38.2 0.8 30 239-269 119-148 (178)
130 PRK05685 fliS flagellar protei 53.1 62 0.0014 29.5 7.4 33 8-40 33-65 (132)
131 PRK10370 formate-dependent nit 53.1 60 0.0013 31.1 7.7 39 8-46 71-109 (198)
132 PLN03088 SGT1, suppressor of 52.6 30 0.00065 36.2 6.0 45 9-53 35-79 (356)
133 PF09538 FYDLN_acid: Protein o 52.4 6.7 0.00014 35.1 1.0 28 239-269 11-38 (108)
134 PF14353 CpXC: CpXC protein 52.3 7.1 0.00015 34.9 1.2 30 239-268 3-49 (128)
135 PF13525 YfiO: Outer membrane 52.3 32 0.0007 32.8 5.7 37 9-45 4-40 (203)
136 TIGR00373 conserved hypothetic 51.9 6.8 0.00015 36.9 1.0 30 239-269 111-140 (158)
137 TIGR01206 lysW lysine biosynth 51.7 12 0.00027 29.6 2.3 37 239-275 4-40 (54)
138 PF13446 RPT: A repeated domai 51.5 26 0.00056 27.6 4.1 26 73-99 6-31 (62)
139 KOG4234 TPR repeat-containing 51.4 30 0.00064 35.1 5.3 41 5-45 90-130 (271)
140 KOG0714 Molecular chaperone (D 51.0 7.2 0.00016 37.6 1.1 118 8-140 3-153 (306)
141 PF14561 TPR_20: Tetratricopep 51.0 1.1E+02 0.0024 26.1 8.2 36 8-43 20-55 (90)
142 PF11817 Foie-gras_1: Foie gra 50.4 40 0.00087 33.4 6.2 41 4-44 172-212 (247)
143 PRK10866 outer membrane biogen 50.3 53 0.0011 32.7 7.0 93 13-114 72-166 (243)
144 PF13374 TPR_10: Tetratricopep 49.1 42 0.0009 22.7 4.5 33 10-42 2-34 (42)
145 PF13371 TPR_9: Tetratricopept 49.1 38 0.00083 26.0 4.7 37 17-53 2-38 (73)
146 COG1326 Uncharacterized archae 47.2 13 0.00028 36.7 2.1 37 237-274 6-47 (201)
147 PF13512 TPR_18: Tetratricopep 47.1 85 0.0018 29.5 7.4 35 10-44 10-44 (142)
148 PLN02189 cellulose synthase 46.8 12 0.00027 44.8 2.2 43 233-279 50-97 (1040)
149 KOG0543 FKBP-type peptidyl-pro 46.4 43 0.00093 36.4 6.0 79 14-102 261-339 (397)
150 cd00189 TPR Tetratricopeptide 46.3 69 0.0015 23.2 5.6 32 13-44 3-34 (100)
151 PF08271 TF_Zn_Ribbon: TFIIB z 45.7 8.5 0.00018 28.4 0.5 27 239-266 2-28 (43)
152 PRK15359 type III secretion sy 44.2 71 0.0015 28.8 6.3 45 8-52 56-100 (144)
153 TIGR02552 LcrH_SycD type III s 43.8 75 0.0016 27.1 6.2 43 10-52 51-93 (135)
154 KOG0543 FKBP-type peptidyl-pro 42.3 50 0.0011 35.9 5.7 44 11-54 292-335 (397)
155 PF14346 DUF4398: Domain of un 42.3 49 0.0011 28.4 4.8 32 8-39 43-74 (103)
156 PF07219 HemY_N: HemY protein 42.2 1.1E+02 0.0024 26.6 7.0 43 7-50 56-98 (108)
157 PF11833 DUF3353: Protein of u 41.9 48 0.001 32.5 5.2 40 81-128 1-40 (194)
158 KOG0547 Translocase of outer m 41.5 1E+02 0.0022 34.9 7.9 50 8-57 113-162 (606)
159 TIGR00990 3a0801s09 mitochondr 41.4 2.3E+02 0.005 31.5 11.0 34 9-42 126-159 (615)
160 smart00834 CxxC_CXXC_SSSS Puta 40.7 12 0.00027 26.6 0.7 28 239-266 7-35 (41)
161 PLN02436 cellulose synthase A 40.2 18 0.00039 43.6 2.3 44 232-279 51-99 (1094)
162 PRK15179 Vi polysaccharide bio 39.8 1.9E+02 0.0042 33.5 10.3 118 10-131 86-224 (694)
163 cd04476 RPA1_DBD_C RPA1_DBD_C: 39.6 16 0.00034 33.9 1.4 31 234-267 31-61 (166)
164 smart00647 IBR In Between Ring 39.5 18 0.00038 27.7 1.4 32 237-268 18-51 (64)
165 PLN03098 LPA1 LOW PSII ACCUMUL 38.8 1.8E+02 0.004 32.3 9.4 38 8-45 73-110 (453)
166 KOG4234 TPR repeat-containing 38.6 1E+02 0.0023 31.4 6.9 81 7-97 131-211 (271)
167 KOG3576 Ovo and related transc 38.5 52 0.0011 33.2 4.8 50 233-285 115-176 (267)
168 PF10058 DUF2296: Predicted in 37.7 20 0.00044 28.3 1.5 32 234-265 19-52 (54)
169 TIGR03302 OM_YfiO outer membra 37.7 68 0.0015 30.3 5.4 31 14-44 170-200 (235)
170 cd00194 UBA Ubiquitin Associat 37.5 36 0.00078 23.9 2.7 28 1-33 9-36 (38)
171 PLN02400 cellulose synthase 37.0 18 0.0004 43.6 1.7 43 233-279 52-99 (1085)
172 PF07282 OrfB_Zn_ribbon: Putat 37.0 20 0.00043 28.5 1.4 29 239-269 30-58 (69)
173 TIGR02300 FYDLN_acid conserved 36.6 16 0.00034 34.0 0.8 29 239-270 11-39 (129)
174 PF10571 UPF0547: Uncharacteri 36.6 16 0.00034 24.9 0.6 25 239-269 2-26 (26)
175 PLN02638 cellulose synthase A 36.3 17 0.00037 43.8 1.3 43 233-279 33-80 (1079)
176 PRK12370 invasion protein regu 35.9 3E+02 0.0065 30.5 10.7 35 16-50 344-378 (553)
177 COG4235 Cytochrome c biogenesi 35.7 1.5E+02 0.0034 30.9 7.9 95 8-126 154-254 (287)
178 COG3677 Transposase and inacti 34.8 19 0.00041 33.0 1.1 32 238-269 31-65 (129)
179 PF13525 YfiO: Outer membrane 34.4 2.4E+02 0.0053 26.8 8.6 97 10-126 42-141 (203)
180 PRK10803 tol-pal system protei 34.3 2.3E+02 0.0049 28.8 8.8 36 9-44 141-177 (263)
181 smart00731 SprT SprT homologue 33.9 31 0.00068 31.6 2.4 35 234-268 109-144 (146)
182 COG5552 Uncharacterized conser 33.9 1.5E+02 0.0032 25.6 6.0 51 72-123 3-53 (88)
183 KOG1126 DNA-binding cell divis 33.1 42 0.0009 38.5 3.6 39 6-44 417-455 (638)
184 COG1645 Uncharacterized Zn-fin 33.1 30 0.00064 32.3 2.0 35 238-277 29-64 (131)
185 PF12760 Zn_Tnp_IS1595: Transp 33.0 24 0.00052 26.4 1.2 26 239-265 20-45 (46)
186 PRK10803 tol-pal system protei 32.7 1.2E+02 0.0027 30.7 6.6 34 12-45 182-215 (263)
187 PF15469 Sec5: Exocyst complex 32.5 96 0.0021 29.1 5.5 77 18-107 94-174 (182)
188 PF13512 TPR_18: Tetratricopep 32.3 4.4E+02 0.0094 24.9 11.3 37 13-49 50-86 (142)
189 PRK15359 type III secretion sy 32.3 1.1E+02 0.0023 27.6 5.6 88 12-105 26-125 (144)
190 KOG0553 TPR repeat-containing 32.1 1E+02 0.0022 32.5 5.9 47 11-57 150-196 (304)
191 COG4391 Uncharacterized protei 32.0 16 0.00034 30.0 0.1 12 238-249 49-60 (62)
192 PRK00420 hypothetical protein; 31.9 26 0.00057 31.7 1.5 28 238-268 24-51 (112)
193 TIGR00155 pqiA_fam integral me 31.4 26 0.00055 37.9 1.6 33 237-269 13-45 (403)
194 PF00627 UBA: UBA/TS-N domain; 31.1 23 0.00049 25.2 0.8 28 1-33 10-37 (37)
195 COG4888 Uncharacterized Zn rib 30.8 25 0.00055 31.5 1.2 38 234-274 21-62 (104)
196 PF09788 Tmemb_55A: Transmembr 30.7 33 0.00071 35.2 2.1 33 234-266 154-186 (256)
197 PF14569 zf-UDP: Zinc-binding 30.7 19 0.00041 30.9 0.4 29 241-271 37-65 (80)
198 PF13424 TPR_12: Tetratricopep 30.7 1.4E+02 0.003 23.3 5.3 32 9-40 4-35 (78)
199 COG5010 TadD Flp pilus assembl 30.6 81 0.0018 32.5 4.8 37 16-52 106-142 (257)
200 PF10122 Mu-like_Com: Mu-like 30.5 44 0.00095 26.5 2.3 35 239-273 6-40 (51)
201 COG2250 Uncharacterized conser 30.4 4.2E+02 0.0092 24.2 9.7 84 8-108 11-96 (132)
202 PF06467 zf-FCS: MYM-type Zinc 30.3 28 0.00061 25.1 1.2 31 256-287 5-37 (43)
203 TIGR02605 CxxC_CxxC_SSSS putat 30.3 27 0.00058 26.4 1.1 27 239-265 7-34 (52)
204 smart00661 RPOL9 RNA polymeras 29.9 35 0.00076 25.5 1.7 29 239-268 2-31 (52)
205 KOG2002 TPR-containing nuclear 29.8 1.2E+02 0.0026 36.6 6.6 37 8-44 162-198 (1018)
206 PF15135 UPF0515: Uncharacteri 29.8 38 0.00083 34.8 2.4 32 239-270 134-168 (278)
207 smart00165 UBA Ubiquitin assoc 29.8 54 0.0012 22.9 2.5 28 1-33 9-36 (37)
208 PRK15103 paraquat-inducible me 29.7 26 0.00057 38.0 1.3 32 238-269 11-42 (419)
209 PRK05978 hypothetical protein; 29.6 23 0.0005 33.5 0.8 31 239-270 35-65 (148)
210 PRK02603 photosystem I assembl 29.4 1.4E+02 0.0031 27.2 6.0 36 8-43 33-68 (172)
211 PF01927 Mut7-C: Mut7-C RNAse 29.1 29 0.00064 32.0 1.3 34 234-267 88-134 (147)
212 PF04505 Dispanin: Interferon- 29.0 59 0.0013 27.5 3.0 25 16-40 43-67 (82)
213 PRK10370 formate-dependent nit 28.8 1.2E+02 0.0027 29.0 5.6 44 9-52 106-152 (198)
214 KOG1859 Leucine-rich repeat pr 28.8 51 0.0011 39.0 3.4 40 318-357 746-786 (1096)
215 PF13453 zf-TFIIB: Transcripti 28.5 26 0.00057 25.6 0.7 29 240-268 2-30 (41)
216 PF13424 TPR_12: Tetratricopep 28.3 72 0.0016 24.9 3.3 32 9-40 45-76 (78)
217 PF13913 zf-C2HC_2: zinc-finge 27.9 26 0.00055 23.4 0.5 13 257-269 2-14 (25)
218 PF14687 DUF4460: Domain of un 27.8 1.2E+02 0.0026 27.3 4.9 42 86-127 7-53 (112)
219 PF12895 Apc3: Anaphase-promot 27.5 55 0.0012 26.3 2.6 34 9-43 24-57 (84)
220 PF01485 IBR: IBR domain; Int 27.4 31 0.00068 26.2 1.0 30 238-267 19-50 (64)
221 cd00189 TPR Tetratricopeptide 27.2 1.9E+02 0.004 20.8 5.2 33 12-44 36-68 (100)
222 CHL00033 ycf3 photosystem I as 27.0 2.2E+02 0.0048 25.7 6.7 35 8-42 33-67 (168)
223 PF07721 TPR_4: Tetratricopept 26.8 79 0.0017 20.6 2.7 23 12-34 3-25 (26)
224 PF08646 Rep_fac-A_C: Replicat 26.2 38 0.00082 30.8 1.5 31 234-267 15-47 (146)
225 TIGR02521 type_IV_pilW type IV 26.2 2E+02 0.0042 25.6 6.1 37 9-45 30-66 (234)
226 PF05605 zf-Di19: Drought indu 26.1 30 0.00065 26.6 0.7 27 239-267 4-41 (54)
227 TIGR00208 fliS flagellar biosy 25.9 1.2E+02 0.0027 27.3 4.7 32 8-39 29-60 (124)
228 TIGR01562 FdhE formate dehydro 25.4 35 0.00077 35.7 1.3 26 235-266 208-233 (305)
229 PF14354 Lar_restr_allev: Rest 25.0 37 0.0008 26.4 1.1 26 240-265 6-37 (61)
230 PF11702 DUF3295: Protein of u 24.4 33 0.00072 38.3 0.9 22 333-354 286-315 (507)
231 PRK12496 hypothetical protein; 24.1 38 0.00082 32.2 1.1 30 236-269 125-155 (164)
232 PF02561 FliS: Flagellar prote 24.0 1.2E+02 0.0026 27.0 4.2 31 8-38 27-57 (122)
233 cd00084 HMG-box High Mobility 24.0 1.5E+02 0.0033 22.2 4.3 44 90-137 11-54 (66)
234 TIGR02159 PA_CoA_Oxy4 phenylac 23.8 22 0.00047 33.3 -0.5 33 238-270 106-143 (146)
235 PF10849 DUF2654: Protein of u 23.5 2.8E+02 0.0061 23.4 5.9 37 6-42 12-48 (70)
236 PRK10996 thioredoxin 2; Provis 23.5 41 0.00089 30.3 1.2 32 238-269 3-34 (139)
237 PF08274 PhnA_Zn_Ribbon: PhnA 23.5 39 0.00084 23.9 0.8 24 239-265 4-27 (30)
238 PF14787 zf-CCHC_5: GAG-polypr 23.5 35 0.00075 25.3 0.6 11 259-269 4-14 (36)
239 COG1675 TFA1 Transcription ini 23.4 33 0.00072 33.3 0.6 34 235-270 112-145 (176)
240 PF06827 zf-FPG_IleRS: Zinc fi 23.1 36 0.00079 23.2 0.6 27 239-265 3-29 (30)
241 PF13429 TPR_15: Tetratricopep 22.9 1.4E+02 0.003 29.3 4.9 39 8-46 144-182 (280)
242 PF01155 HypA: Hydrogenase exp 22.4 31 0.00067 30.7 0.2 27 239-269 72-98 (113)
243 PF10083 DUF2321: Uncharacteri 22.3 35 0.00076 32.7 0.5 9 260-268 71-79 (158)
244 cd01388 SOX-TCF_HMG-box SOX-TC 22.3 1.6E+02 0.0035 23.5 4.3 43 92-138 14-56 (72)
245 TIGR00100 hypA hydrogenase nic 22.3 39 0.00086 30.2 0.8 27 239-269 72-98 (115)
246 PF13240 zinc_ribbon_2: zinc-r 22.3 35 0.00077 22.4 0.4 21 240-266 2-22 (23)
247 PF05129 Elf1: Transcription e 22.2 37 0.0008 28.9 0.6 38 234-274 21-62 (81)
248 PF04733 Coatomer_E: Coatomer 22.1 3.4E+02 0.0073 27.9 7.6 32 12-43 203-234 (290)
249 PF04212 MIT: MIT (microtubule 21.8 2.1E+02 0.0046 22.6 4.9 31 8-38 3-33 (69)
250 cd01390 HMGB-UBF_HMG-box HMGB- 21.7 1.8E+02 0.0038 22.2 4.3 40 94-137 15-54 (66)
251 KOG0548 Molecular co-chaperone 21.6 3.5E+02 0.0076 30.8 8.0 117 10-133 358-504 (539)
252 COG1656 Uncharacterized conser 21.4 42 0.00091 32.4 0.9 11 257-267 130-140 (165)
253 COG2956 Predicted N-acetylgluc 21.1 4.4E+02 0.0095 28.7 8.2 87 10-106 107-195 (389)
254 COG2015 Alkyl sulfatase and re 21.1 1.8E+02 0.0039 33.0 5.6 46 10-55 452-497 (655)
255 PRK12366 replication factor A; 21.0 49 0.0011 37.8 1.4 29 234-266 529-557 (637)
256 PF04216 FdhE: Protein involve 20.9 35 0.00076 34.8 0.3 26 236-267 196-221 (290)
257 COG0675 Transposase and inacti 20.8 50 0.0011 32.6 1.3 28 235-269 305-334 (364)
258 COG4049 Uncharacterized protei 20.8 36 0.00077 27.7 0.2 24 232-256 13-36 (65)
259 COG1516 FliS Flagellin-specifi 20.8 1.4E+02 0.0031 27.8 4.2 33 8-40 29-61 (132)
260 PRK10220 hypothetical protein; 20.7 49 0.0011 30.1 1.0 30 239-271 5-34 (111)
261 smart00659 RPOLCX RNA polymera 20.7 55 0.0012 24.8 1.2 27 239-268 4-30 (44)
262 PF09723 Zn-ribbon_8: Zinc rib 20.4 37 0.00079 25.2 0.2 27 239-265 7-34 (42)
263 TIGR00686 phnA alkylphosphonat 20.1 48 0.001 30.1 0.9 30 239-271 4-33 (109)
264 PLN02915 cellulose synthase A 20.1 50 0.0011 40.0 1.2 43 233-279 31-78 (1044)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2e-21 Score=200.82 Aligned_cols=71 Identities=34% Similarity=0.483 Sum_probs=68.1
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhCCchhhHhhhhhccccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNR-FPFADRSFKLVYDAWSILSNPARKIMYDTDLQLSQ 142 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~-~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~~ 142 (490)
..|||+||||+++| +.+|||+|||+||++||||+|+ .+.|+++|++|+|||+|||||+||+.||+++....
T Consensus 3 ~~dyYeiLGV~k~A-s~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~ 74 (371)
T COG0484 3 KRDYYEILGVSKDA-SEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGF 74 (371)
T ss_pred ccchhhhcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcccc
Confidence 57999999999999 8999999999999999999999 88999999999999999999999999999998764
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9.2e-20 Score=185.32 Aligned_cols=73 Identities=33% Similarity=0.482 Sum_probs=67.9
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhCCchhhHhhhhhccccc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNR-FPFADRSFKLVYDAWSILSNPARKIMYDTDLQLSQ 142 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~-~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~~ 142 (490)
...+|||+||||+++| +..|||+|||||||+||||||+ ++.|.+.|+.|+.||+|||||.+|+.||.++.-..
T Consensus 13 ~~~rDfYelLgV~k~A-sd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL 86 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNA-SDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGL 86 (336)
T ss_pred hcCCCHHHHhCCCCCC-CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhh
Confidence 4568999999999999 7899999999999999999999 58999999999999999999999999999985443
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.6e-18 Score=177.04 Aligned_cols=68 Identities=34% Similarity=0.578 Sum_probs=64.4
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNR-FPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~-~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
.|||+||||+++| +.++||+|||+||++||||+|+ .+.|+++|++|++||+||||+.+|+.||+++..
T Consensus 3 ~dyY~vLgv~~~A-s~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 3 LSYYEILEVEKHS-NQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CChHHHcCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 6999999999999 8999999999999999999998 567999999999999999999999999998764
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.7e-18 Score=177.20 Aligned_cols=69 Identities=26% Similarity=0.366 Sum_probs=65.5
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
..|||+||||+++| +.++||+|||+||++||||+|+.+.|+++|++|++||+||||+.||+.||+++..
T Consensus 3 ~~dyY~~Lgv~~~a-~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 3 KKDYYEVLGVSKTA-SEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCHHHhcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 36999999999999 8999999999999999999999888999999999999999999999999998764
No 5
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.2e-17 Score=172.43 Aligned_cols=68 Identities=38% Similarity=0.529 Sum_probs=64.1
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNR-FPFADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~-~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
..|||+||||++.| +.++||+|||+||++||||+|+ .+.|++.|++|++||+||||+.||+.||+++.
T Consensus 8 ~~Dyy~~Lgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDA-SAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 37999999999999 8999999999999999999998 46799999999999999999999999999874
No 6
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=5.6e-17 Score=168.27 Aligned_cols=69 Identities=35% Similarity=0.540 Sum_probs=65.2
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
..|||+||||++.| +.++||+|||+||++||||+|+.+.|+++|++|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a-~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNA-SVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 36999999999999 8899999999999999999998888999999999999999999999999998754
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=5.4e-17 Score=168.44 Aligned_cols=69 Identities=29% Similarity=0.488 Sum_probs=64.5
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNR-FPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~-~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
..|||+||||+++| +.++||+|||+||++||||+|+ .+.|+++|++|++||+||+|+.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (372)
T PRK14286 3 ERSYYDILGVSKSA-NDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKA 72 (372)
T ss_pred CCCHHHhcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence 36999999999999 8999999999999999999998 467999999999999999999999999998764
No 8
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=6.3e-17 Score=168.30 Aligned_cols=69 Identities=29% Similarity=0.451 Sum_probs=65.5
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
..|||+||||++.| +.++||+|||+||++||||+|+.+.|+++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a-~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 71 (380)
T PRK14276 3 NTEYYDRLGVSKDA-SQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA 71 (380)
T ss_pred CCCHHHhhCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence 36999999999999 8999999999999999999999888999999999999999999999999998764
No 9
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.67 E-value=2.3e-16 Score=161.79 Aligned_cols=124 Identities=23% Similarity=0.264 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcccceeccCCCCCCChHhhhccccCCC
Q 011245 6 NRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTIIAGESIIITSNGNQYHDWYAILQLARFTH 85 (490)
Q Consensus 6 NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvllAae~rv~~~~~~~~~D~Y~ILgV~~~A~ 85 (490)
..+.+.-++++|+.+|...+|+.|+..+++|+++.++...+..-+.-+..+... .+.+|||+||||.++|
T Consensus 337 d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkq---------s~kRDYYKILGVkRnA- 406 (504)
T KOG0624|consen 337 DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQ---------SGKRDYYKILGVKRNA- 406 (504)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH---------hccchHHHHhhhcccc-
Confidence 357889999999999999999999999999999999987766666554444321 6789999999999999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 86 SIELIATQYRKLALLLSPERNRFP----FADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 86 d~~eIKkaYRkLAl~lHPDKn~~~----~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
+..||.||||+||.+||||..++. .|+.+|..|..|-+||+||++|+.||....
T Consensus 407 sKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeD 464 (504)
T KOG0624|consen 407 SKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGED 464 (504)
T ss_pred cHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCC
Confidence 899999999999999999988763 499999999999999999999999998765
No 10
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=7.9e-17 Score=162.06 Aligned_cols=69 Identities=35% Similarity=0.600 Sum_probs=65.4
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
..|||+||||+++| +.++||+|||+||++||||+|+.+.++++|++|++||++|+|+.+|+.||+++..
T Consensus 3 ~~d~y~vLgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNA-SQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 36999999999999 8999999999999999999998888999999999999999999999999998764
No 11
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=7.6e-17 Score=167.67 Aligned_cols=69 Identities=35% Similarity=0.576 Sum_probs=65.4
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
..|||+||||++.| +.++||+|||+||++||||+|+.+.|+++|++|++||+||+||.+|+.||+++..
T Consensus 4 ~~d~y~iLgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 4 TRDYYEILGLSKDA-SVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CCCHHHhhCCCCCC-CHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence 47999999999999 8999999999999999999998888999999999999999999999999998754
No 12
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=8.7e-17 Score=167.06 Aligned_cols=69 Identities=28% Similarity=0.404 Sum_probs=65.6
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
..|||+||||++.| +.+|||+|||+||++||||+|+.+.|++.|+.|++||++|||+.+|+.||+++..
T Consensus 4 ~~d~y~~Lgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~ 72 (378)
T PRK14283 4 KRDYYEVLGVDRNA-DKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA 72 (378)
T ss_pred cCChHHhhCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence 57999999999999 8999999999999999999998888999999999999999999999999998754
No 13
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=9.6e-17 Score=167.04 Aligned_cols=69 Identities=33% Similarity=0.573 Sum_probs=65.5
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhcccc
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQLS 141 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~ 141 (490)
.|||+||||++.| +.++||+|||+||++||||+|+.+.|+++|++|++||+|||||.+|+.||+++...
T Consensus 3 ~d~Y~~Lgv~~~a-~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~ 71 (382)
T PRK14291 3 KDYYEILGVSRNA-TQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA 71 (382)
T ss_pred CCHHHhhCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence 6999999999999 89999999999999999999998889999999999999999999999999987643
No 14
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=7.4e-17 Score=165.25 Aligned_cols=69 Identities=33% Similarity=0.466 Sum_probs=64.3
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQLSQ 142 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~~ 142 (490)
...||.||+|.++| +.+|||||||+||++||||||+. +.++|++|.+||+|||||++|..||+++....
T Consensus 3 ~~~~y~il~v~~~A-s~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~ 71 (337)
T KOG0712|consen 3 NTKLYDILGVSPDA-SEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGL 71 (337)
T ss_pred ccccceeeccCCCc-CHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence 46799999999999 89999999999999999999976 88999999999999999999999999986543
No 15
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=8.2e-17 Score=167.40 Aligned_cols=67 Identities=33% Similarity=0.450 Sum_probs=64.2
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
.|||+||||++.| +.++||+|||+||++||||+|+.+.|+++|++|++||+||+|+.+|+.||+++.
T Consensus 3 ~d~y~iLgv~~~a-~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 69 (378)
T PRK14278 3 RDYYGLLGVSRNA-SDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69 (378)
T ss_pred CCcceecCCCCCC-CHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence 6999999999999 899999999999999999999988899999999999999999999999999875
No 16
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1.2e-16 Score=165.88 Aligned_cols=68 Identities=29% Similarity=0.466 Sum_probs=65.1
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
.|||+||||+++| +.++||+|||+||++||||+|+.+.|+++|++|++||+|||||.+|+.||+++..
T Consensus 4 ~~~y~iLgv~~~a-~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 4 RDYYEVLGVSKSA-SKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred CChHHhhCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence 6999999999999 8999999999999999999999888999999999999999999999999998754
No 17
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.65 E-value=1.6e-16 Score=124.57 Aligned_cols=62 Identities=35% Similarity=0.508 Sum_probs=59.3
Q ss_pred ChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHHHhCCchhhHhhh
Q 011245 73 DWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPF--ADRSFKLVYDAWSILSNPARKIMYD 135 (490)
Q Consensus 73 D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~--AeeaFk~I~eAYevLSDp~kRa~YD 135 (490)
|||+||||++.+ +.++||++|++|++.+|||++.... +++.|..|++||++|+|+.+|+.||
T Consensus 1 ~~y~iLgl~~~~-~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDA-SDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTS-SHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCC-CHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 699999999999 8999999999999999999988755 8999999999999999999999998
No 18
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.6e-16 Score=164.52 Aligned_cols=69 Identities=30% Similarity=0.510 Sum_probs=63.9
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF--PFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~--~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
..|||+||||++.| +.++||+|||+||++||||+|+. ..|++.|++|++||+||||+.+|+.||+++..
T Consensus 3 ~~d~y~~lgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 3 KKDYYEILGVSRNA-TQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CCChHHhcCCCCCC-CHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 36999999999999 89999999999999999999974 56899999999999999999999999998754
No 19
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.65 E-value=1.4e-16 Score=168.14 Aligned_cols=66 Identities=27% Similarity=0.463 Sum_probs=61.6
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
..|||+||||+++| +.++||+|||+||++||||||+. .++|++|++||+|||||.+|+.||+++..
T Consensus 27 ~~d~Y~vLGV~~~A-s~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~ 92 (421)
T PTZ00037 27 NEKLYEVLNLSKDC-TTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEE 92 (421)
T ss_pred chhHHHHcCCCCCC-CHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence 57999999999999 89999999999999999999863 58999999999999999999999998754
No 20
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=2.3e-16 Score=164.41 Aligned_cols=69 Identities=33% Similarity=0.485 Sum_probs=64.5
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNR-FPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~-~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
..|||+||||+++| +.++||+|||+||++||||+|+ .+.|+++|++|++||+||||+.+|+.||+++..
T Consensus 4 ~~d~y~~Lgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 73 (386)
T PRK14277 4 KKDYYEILGVDRNA-TEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA 73 (386)
T ss_pred CCCHHHhcCCCCCC-CHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence 47999999999999 8999999999999999999998 467899999999999999999999999998754
No 21
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=2.1e-16 Score=163.64 Aligned_cols=68 Identities=29% Similarity=0.460 Sum_probs=63.9
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF-PFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~-~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
.|||+||||+++| +.++||+|||+||++||||+|+. +.|+++|++|++||+||+|+.+|..||+++..
T Consensus 3 ~d~y~iLgv~~~a-~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 3 RDYYEILGLSKGA-SKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred CCHHHhcCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence 6999999999999 89999999999999999999974 67889999999999999999999999998764
No 22
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3.1e-16 Score=162.33 Aligned_cols=69 Identities=36% Similarity=0.508 Sum_probs=64.6
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNR-FPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~-~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
..|||+||||++.| +.++||+|||+||++||||+|+ .+.|++.|+.|++||+||+|+.+|+.||+++..
T Consensus 3 ~~d~y~~lgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~ 72 (366)
T PRK14294 3 KRDYYEILGVTRDA-SEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE 72 (366)
T ss_pred CCChHHHhCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence 47999999999999 8999999999999999999998 467899999999999999999999999998764
No 23
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3.6e-16 Score=163.17 Aligned_cols=68 Identities=34% Similarity=0.495 Sum_probs=63.9
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF-PFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~-~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
.|||+||||+++| +.++||+|||+||++||||+|+. +.|+++|++|++||+||+|+.+|+.||+++..
T Consensus 1 ~d~y~iLgv~~~a-~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 69 (391)
T PRK14284 1 MDYYTILGVSKTA-SPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD 69 (391)
T ss_pred CCHHHhcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence 4899999999999 89999999999999999999984 67999999999999999999999999998764
No 24
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3.8e-16 Score=163.05 Aligned_cols=65 Identities=29% Similarity=0.480 Sum_probs=61.6
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhCCchhhHhhhh
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF-PFADRSFKLVYDAWSILSNPARKIMYDT 136 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~-~~AeeaFk~I~eAYevLSDp~kRa~YD~ 136 (490)
..|||+||||+++| +.++||+|||+||++||||+|+. +.|+++|++|++||+||+||.+|+.||+
T Consensus 8 ~~d~y~~Lgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDA-TEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCC-CHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 36999999999999 89999999999999999999984 5789999999999999999999999998
No 25
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=3.7e-16 Score=162.28 Aligned_cols=69 Identities=33% Similarity=0.516 Sum_probs=64.2
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF-PFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~-~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
..|||+||||+++| +.++||+|||+||++||||+|+. +.|+++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~~~y~~Lgv~~~a-~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 3 QRDYYEVLGVSRDA-SEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CCChHHhcCCCCCC-CHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence 37999999999999 88999999999999999999984 67889999999999999999999999998754
No 26
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=3.6e-16 Score=162.56 Aligned_cols=68 Identities=32% Similarity=0.522 Sum_probs=64.0
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF-PFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~-~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
.|||+||||++.| +.++||+|||+||++||||+|+. +.|+++|++|++||+||+||.+|+.||+++..
T Consensus 4 ~d~y~~Lgv~~~a-~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~ 72 (380)
T PRK14297 4 KDYYEVLGLEKGA-SDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA 72 (380)
T ss_pred CChHHhhCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence 6999999999999 88999999999999999999984 67899999999999999999999999998754
No 27
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=6.8e-16 Score=159.86 Aligned_cols=69 Identities=33% Similarity=0.543 Sum_probs=64.2
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNR-FPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~-~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
..|||+||||+++| +.++||+|||+||++||||+|+ .+.|+++|++|++||++|+|+.+|+.||+++..
T Consensus 3 ~~d~y~iLgv~~~a-s~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGVSRNA-SEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 36999999999999 8999999999999999999997 466889999999999999999999999998754
No 28
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.61 E-value=8.4e-16 Score=158.04 Aligned_cols=67 Identities=36% Similarity=0.546 Sum_probs=63.7
Q ss_pred ChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 73 DWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 73 D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
|||+||||++.| +.++||+|||+||++||||+|+.+.++++|++|++||++|+|+.+|..||+++..
T Consensus 1 d~y~~Lgv~~~a-~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~ 67 (354)
T TIGR02349 1 DYYEILGVSKDA-SEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHA 67 (354)
T ss_pred ChHHhCCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence 799999999999 8999999999999999999998778999999999999999999999999998754
No 29
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=7.5e-16 Score=161.19 Aligned_cols=68 Identities=34% Similarity=0.502 Sum_probs=63.8
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF-PFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~-~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
.|||+||||++.| +.++||+|||+||++||||+|+. ..|++.|++|++||++|+|+.+|+.||+++..
T Consensus 3 ~d~y~iLgv~~~a-~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~ 71 (397)
T PRK14281 3 RDYYEVLGVSRSA-DKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHA 71 (397)
T ss_pred CChhhhcCCCCCC-CHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccch
Confidence 6999999999999 89999999999999999999984 67889999999999999999999999998754
No 30
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.60 E-value=1.3e-15 Score=154.28 Aligned_cols=67 Identities=36% Similarity=0.594 Sum_probs=63.9
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
.|||+||||++.+ +.++||+|||+||++||||+++...++++|++|++||++|+|+.+|+.||.++.
T Consensus 4 ~d~y~~Lgv~~~a-~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTD-DLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 6999999999998 899999999999999999999888899999999999999999999999999763
No 31
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=1.2e-15 Score=158.40 Aligned_cols=68 Identities=25% Similarity=0.385 Sum_probs=64.6
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
.|||+||||++.| +.++||+|||+||++||||+++...++++|++|++||++|+|+.+|+.||+++..
T Consensus 3 ~~~y~iLgv~~~a-s~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~ 70 (372)
T PRK14300 3 QDYYQILGVSKTA-SQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD 70 (372)
T ss_pred CChHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence 6999999999999 8999999999999999999998778999999999999999999999999998754
No 32
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.3e-15 Score=157.83 Aligned_cols=68 Identities=32% Similarity=0.519 Sum_probs=64.9
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
.|||+||||++.| +.++||+|||+||++||||+++...|+++|++|++||++|+|+.+|+.||+++..
T Consensus 2 ~d~y~~Lgv~~~a-~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTA-SADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCC-CHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 5999999999999 8999999999999999999999888999999999999999999999999998764
No 33
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.5e-15 Score=153.83 Aligned_cols=70 Identities=27% Similarity=0.421 Sum_probs=66.7
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhCCchhhHhhhhhcccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNR-FPFADRSFKLVYDAWSILSNPARKIMYDTDLQLS 141 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~-~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~ 141 (490)
..|||.||||+..+ +..+|++|||+.|++||||||+ +|.|.+.|+.|.+||+||+|+.+|+.||..+...
T Consensus 4 ~~dyY~lLgi~~~a-t~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~ 74 (296)
T KOG0691|consen 4 DTDYYDLLGISEDA-TDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG 74 (296)
T ss_pred cchHHHHhCCCCCC-CHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 67999999999999 8899999999999999999999 5889999999999999999999999999999764
No 34
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.5e-15 Score=157.65 Aligned_cols=68 Identities=31% Similarity=0.493 Sum_probs=64.8
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
.|||+||||++.| +.++||+|||+|+++||||+|+.+.|+++|++|++||+||+|+.+|+.||.++..
T Consensus 3 ~d~y~vLgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 3 ADYYEILGVSRDA-DKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CChhhhcCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 6999999999999 8999999999999999999999888999999999999999999999999998753
No 35
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.6e-15 Score=159.36 Aligned_cols=70 Identities=30% Similarity=0.501 Sum_probs=64.9
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF--PFADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~--~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
...++||+||||.+.| +..+||++||+|||+||||||+. ..|.+.|++|+.||+|||||..|+.||..+.
T Consensus 5 ~~~~c~YE~L~v~~~a-~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDA-DDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred hhhhHHHHHhcccccC-CHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 4568999999999999 88999999999999999999986 5688999999999999999999999998765
No 36
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=5.5e-15 Score=154.12 Aligned_cols=120 Identities=28% Similarity=0.411 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcccceeccCCCCCCChHhhhccccCCCCHHHH
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTIIAGESIIITSNGNQYHDWYAILQLARFTHSIELI 90 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvllAae~rv~~~~~~~~~D~Y~ILgV~~~A~d~~eI 90 (490)
..++.+|+.+|..+++.+|.+++++|..+.-+. .+.+++.-+...+.. ++..|||.||||.+.+ +..+|
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s~-e~r~~l~~A~~aLkk---------SkRkd~ykilGi~~~a-s~~ei 390 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKDC-EIRRTLREAQLALKK---------SKRKDWYKILGISRNA-SDDEI 390 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-chHHHHHHHHHHHHH---------hhhhhHHHHhhhhhhc-ccchh
Confidence 456788999999999999999999999998884 344555444443322 5678999999999999 78999
Q ss_pred HHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhCCchhhHhhhhhcccc
Q 011245 91 ATQYRKLALLLSPERNRF--PFADRSFKLVYDAWSILSNPARKIMYDTDLQLS 141 (490)
Q Consensus 91 KkaYRkLAl~lHPDKn~~--~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~ 141 (490)
|++||++||.+|||++.. ..++..|+.|.+||.+|+|+.+|..||..-.+-
T Consensus 391 kkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle 443 (486)
T KOG0550|consen 391 KKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLE 443 (486)
T ss_pred hhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchh
Confidence 999999999999999974 478999999999999999999999999876653
No 37
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.2e-15 Score=149.80 Aligned_cols=70 Identities=36% Similarity=0.553 Sum_probs=66.0
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhCCchhhHhhhhhcccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF-PFADRSFKLVYDAWSILSNPARKIMYDTDLQLS 141 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~-~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~ 141 (490)
..|+|+||||+++| +.++|||+||+|++++|||++++ |.+.++|++|++||+||||+.+|..||.++...
T Consensus 30 ~~~LYdVLgl~k~a-t~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~ 100 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTA-TKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELG 100 (279)
T ss_pred hhHHHHHhCCCccc-chHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHH
Confidence 57899999999999 78999999999999999999986 889999999999999999999999999997654
No 38
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=2.2e-15 Score=155.98 Aligned_cols=68 Identities=31% Similarity=0.471 Sum_probs=63.5
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFP--FADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~--~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
.|||+||||++.| +.++||+|||+||++||||+|+.. .|++.|++|++||++|+|+.+|..||.++..
T Consensus 3 ~d~y~vLgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNA-SQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence 6999999999999 899999999999999999999853 6899999999999999999999999998754
No 39
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.7e-15 Score=151.44 Aligned_cols=71 Identities=28% Similarity=0.431 Sum_probs=67.3
Q ss_pred CCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhcccc
Q 011245 70 QYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQLS 141 (490)
Q Consensus 70 ~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~ 141 (490)
...|||+||||++.| +..|||+||++||++||||.|...+|++.|+.|.+||+||+|+++|..||..+...
T Consensus 41 ~~~d~Y~vLgv~~~A-t~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 41 SKEDYYKVLGVSRNA-TLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CCcchhhhhCcCCCC-CHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 334999999999999 89999999999999999999999999999999999999999999999999999764
No 40
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=3.1e-15 Score=155.83 Aligned_cols=69 Identities=28% Similarity=0.490 Sum_probs=64.4
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF-PFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~-~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
..|||+||||++.| +.+|||+|||+||++||||+|+. +.|+++|+.|++||++|+|+.+|+.||+++..
T Consensus 4 ~~~~y~~Lgv~~~a-~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 4 KRDYYEVLGVSKTA-TVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred cCCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence 47999999999999 89999999999999999999984 57999999999999999999999999998754
No 41
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.1e-15 Score=160.50 Aligned_cols=70 Identities=29% Similarity=0.461 Sum_probs=66.7
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
.+..|+|.||||+.++ +.++|||.||+||.+.|||||..+.|+++|+.|+.||++|+|+.+|..||..+.
T Consensus 232 ~~~~daYsvlGl~~d~-sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ 301 (490)
T KOG0720|consen 232 LNILDAYSALGLPSDC-SDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELK 301 (490)
T ss_pred hcCCCchhhcCCCCCC-CHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 3478999999999988 889999999999999999999999999999999999999999999999999885
No 42
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.54 E-value=1.2e-14 Score=112.00 Aligned_cols=57 Identities=39% Similarity=0.642 Sum_probs=53.5
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCC--CcchHHHHHHHHHHHHHhCCch
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNR--FPFADRSFKLVYDAWSILSNPA 129 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~--~~~AeeaFk~I~eAYevLSDp~ 129 (490)
.|||+||||++.+ +.++||++|++|++.+|||++. ...+++.|++|++||++|+|+.
T Consensus 1 ~~~y~vLgl~~~~-~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDA-SLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 4899999999998 8999999999999999999998 5779999999999999999985
No 43
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8e-15 Score=154.26 Aligned_cols=71 Identities=28% Similarity=0.524 Sum_probs=64.7
Q ss_pred CCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHHHhCCchhhHhhhhhcccc
Q 011245 70 QYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFP----FADRSFKLVYDAWSILSNPARKIMYDTDLQLS 141 (490)
Q Consensus 70 ~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~----~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~ 141 (490)
.+.|||.+|+|+++| +.+||++|||+++++|||||+.++ .|++.|++|.+||+|||||.+|+.||.++.-.
T Consensus 7 ~e~e~Ya~LNlpkdA-t~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qG 81 (546)
T KOG0718|consen 7 DEIELYALLNLPKDA-TDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQG 81 (546)
T ss_pred chhhHHHHhCCCccc-CHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcc
Confidence 456999999999999 779999999999999999998753 59999999999999999999999999887643
No 44
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.52 E-value=1.4e-14 Score=162.93 Aligned_cols=72 Identities=24% Similarity=0.223 Sum_probs=66.7
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhcccc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQLS 141 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~ 141 (490)
-...|||+||||+++| +..+||+|||+||++||||+|+...|.+.|+.|++||+|||||.+|+.||..+...
T Consensus 570 ~~d~dYYdILGVs~dA-S~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G 641 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNA-DMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDG 641 (1136)
T ss_pred CCCCChHHHcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence 3468999999999999 89999999999999999999997788999999999999999999999999987643
No 45
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.51 E-value=3.1e-14 Score=107.78 Aligned_cols=54 Identities=41% Similarity=0.604 Sum_probs=51.3
Q ss_pred ChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhCC
Q 011245 73 DWYAILQLARFTHSIELIATQYRKLALLLSPERNRF-PFADRSFKLVYDAWSILSN 127 (490)
Q Consensus 73 D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~-~~AeeaFk~I~eAYevLSD 127 (490)
|||+||||++.+ +.++||++||+|++.+|||++.. ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~-~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDA-SDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 799999999988 89999999999999999999987 7799999999999999987
No 46
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.5e-14 Score=140.00 Aligned_cols=72 Identities=29% Similarity=0.439 Sum_probs=65.6
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHHHHhCCchhhHhhhhhcccc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNR---FPFADRSFKLVYDAWSILSNPARKIMYDTDLQLS 141 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~---~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~ 141 (490)
....|.|+||||.++| +..+|++||++|+|+||||+++ ...|.+.|+.|+.||.||||..+|+.||..+.+.
T Consensus 11 f~~~d~YevLGVer~a-~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 11 FNKKDLYEVLGVERDA-TDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccccCHHHHhhhcccC-CHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 3456999999999999 7899999999999999999996 3568999999999999999999999999988653
No 47
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=5.1e-14 Score=128.72 Aligned_cols=68 Identities=40% Similarity=0.568 Sum_probs=63.4
Q ss_pred CCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHHHhCCchhhHhhhhhc
Q 011245 70 QYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPF--ADRSFKLVYDAWSILSNPARKIMYDTDL 138 (490)
Q Consensus 70 ~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~--AeeaFk~I~eAYevLSDp~kRa~YD~~~ 138 (490)
...|||+||||.+.| +..+|+++||+||+++|||+++... +++.|+.|++||++|+|+.+|..||..+
T Consensus 4 ~~~~~y~iLgv~~~a-s~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNA-SLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCC-CHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 457999999999999 8999999999999999999999644 8999999999999999999999999964
No 48
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.40 E-value=3.2e-13 Score=149.43 Aligned_cols=68 Identities=32% Similarity=0.476 Sum_probs=64.5
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
.|||+||||++.| +.++||++||+|+++||||++..+.+.++|+.|++||++|+|+.+|+.||.++..
T Consensus 2 ~DYYeVLGVs~dA-S~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~a 69 (871)
T TIGR03835 2 RDYYEVLGIDRDA-DEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHD 69 (871)
T ss_pred CChhHhcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccc
Confidence 6999999999999 8999999999999999999998888889999999999999999999999998754
No 49
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=8.6e-13 Score=128.09 Aligned_cols=70 Identities=21% Similarity=0.278 Sum_probs=65.4
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF-PFADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~-~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
....|+|+||||++++ +..|||+|||+|++++||||++. .+.++.|..|++||..|+|...|..|..+++
T Consensus 96 ~~~fDPyEILGl~pga-s~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGA-SEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred hhcCCcHHhhCCCCCC-CHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 4568999999999999 88999999999999999999987 6778889999999999999999999999986
No 50
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.30 E-value=5.2e-12 Score=118.94 Aligned_cols=68 Identities=21% Similarity=0.371 Sum_probs=59.6
Q ss_pred CChHhhhccccCC-CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 72 HDWYAILQLARFT-HSIELIATQYRKLALLLSPERNRFPF------ADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 72 ~D~Y~ILgV~~~A-~d~~eIKkaYRkLAl~lHPDKn~~~~------AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
.|||+||||++.. .|..+|+++||+|++.+|||+..... +.+.|..|++||++|+||.+|+.|+..+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 4899999999962 37899999999999999999976422 56789999999999999999999998765
No 51
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.26 E-value=9.2e-12 Score=116.91 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=58.8
Q ss_pred CChHhhhccccCC-CCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 72 HDWYAILQLARFT-HSIELIATQYRKLALLLSPERNRFPF----ADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 72 ~D~Y~ILgV~~~A-~d~~eIKkaYRkLAl~lHPDKn~~~~----AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
.|||+||||++.. .|..+|+++||+|++.+|||++.... +...|..|++||++|+||.+|+.|+..+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 5899999999962 37899999999999999999986422 23457899999999999999999998885
No 52
>PHA03102 Small T antigen; Reviewed
Probab=99.26 E-value=6.6e-12 Score=116.76 Aligned_cols=66 Identities=12% Similarity=0.212 Sum_probs=59.0
Q ss_pred CChHhhhccccCC-CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 72 HDWYAILQLARFT-HSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 72 ~D~Y~ILgV~~~A-~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
..+|+||||+++| .+.++||+|||+|++++||||+ +.++.|+.|++||++|+|+.+|..||..+..
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg---g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG---GDEEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---chhHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 4679999999976 2579999999999999999996 4578999999999999999999999998753
No 53
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=6.1e-12 Score=120.90 Aligned_cols=68 Identities=40% Similarity=0.630 Sum_probs=62.7
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFP--FADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~--~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
..|||.||+|.+.| +.++|++|||+||+.||||+|+.. .++.+|++|.+||++|+|+.+|..||++..
T Consensus 2 ~~d~~~~l~i~~~a-s~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSA-SEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccc-cHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46999999999988 567999999999999999999877 666789999999999999999999999986
No 54
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.22 E-value=2.2e-11 Score=115.19 Aligned_cols=70 Identities=24% Similarity=0.304 Sum_probs=61.7
Q ss_pred CCCChHhhhccccC-CCCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 70 QYHDWYAILQLARF-THSIELIATQYRKLALLLSPERNRFPF------ADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 70 ~~~D~Y~ILgV~~~-A~d~~eIKkaYRkLAl~lHPDKn~~~~------AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
+..|||++|||++. ..|..+|+++||+|++.+|||++.... +.+.|..|++||.+|+||.+|+.|+..+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 45799999999987 347899999999999999999986422 56789999999999999999999998886
No 55
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.19 E-value=3.7e-11 Score=113.89 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=59.3
Q ss_pred CCChHhhhccccCC-CCHHHHHHHHHHHHHHhCCCCCCC-cc-----hHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 71 YHDWYAILQLARFT-HSIELIATQYRKLALLLSPERNRF-PF-----ADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A-~d~~eIKkaYRkLAl~lHPDKn~~-~~-----AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
..|||+||||++.. .|..+|+++||+|++++|||++.. .. +.+.+..|++||.+|+||.+|+.|+..+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 47999999999863 378999999999999999999864 22 33446899999999999999999998775
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.3e-11 Score=122.50 Aligned_cols=70 Identities=31% Similarity=0.446 Sum_probs=66.3
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
-+..|+|+||||.+.+ +..+|.+|||+||+.+|||+++.+.+.+.|+.|..||++|.|.+.|..||-.+.
T Consensus 30 CG~enCYdVLgV~Rea-~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREA-NKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred ccchhHHHHhhhhhhc-cHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence 3567999999999999 899999999999999999999999999999999999999999999999998875
No 57
>PHA02624 large T antigen; Provisional
Probab=99.05 E-value=6.3e-10 Score=122.12 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=55.6
Q ss_pred CCChHhhhccccCC-CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhh
Q 011245 71 YHDWYAILQLARFT-HSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMY 134 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A-~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~Y 134 (490)
..++|+||||++.| .+.++||+|||+||+++|||++ ++++.|+.|++||++|+|..+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 36899999999976 2479999999999999999995 5688999999999999999999999
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.03 E-value=7.8e-10 Score=110.86 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=50.5
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHHHhCC
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF--------PFADRSFKLVYDAWSILSN 127 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~--------~~AeeaFk~I~eAYevLSD 127 (490)
..|+|+||||++++ |.++||++||+|++++|||++.. ..|++.|+.|++||++|+.
T Consensus 199 ~~~ay~vLgv~~~a-s~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 199 LEDAYKVLGVSESD-DDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HHhHHHHcCCCCCC-CHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999 89999999999999999999743 3478999999999999974
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.02 E-value=3.9e-10 Score=100.66 Aligned_cols=52 Identities=23% Similarity=0.198 Sum_probs=48.1
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhC
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILS 126 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLS 126 (490)
..++|+||||++++ +.++||++||+|++.+|||+. +..+.|+.|++||++|.
T Consensus 64 ~~eAy~ILGv~~~A-s~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTA-SKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCC-CHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 46999999999999 899999999999999999984 67789999999999995
No 60
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.2e-09 Score=101.80 Aligned_cols=64 Identities=27% Similarity=0.384 Sum_probs=57.8
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhCCchhhHhhh
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF--PFADRSFKLVYDAWSILSNPARKIMYD 135 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~--~~AeeaFk~I~eAYevLSDp~kRa~YD 135 (490)
..|+|+||+|.+.. +.++||+.||+|+++.|||||++ +.|..||-.|..||.+|-|+..|..-+
T Consensus 52 nLNpfeVLqIdpev-~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEV-TDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccChHHHHhcCCCC-CHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 46899999999998 78999999999999999999995 679999999999999999998665444
No 61
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.79 E-value=1.3e-08 Score=96.52 Aligned_cols=68 Identities=22% Similarity=0.201 Sum_probs=60.0
Q ss_pred CChHhhhccccC-CCCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 72 HDWYAILQLARF-THSIELIATQYRKLALLLSPERNRFPF------ADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 72 ~D~Y~ILgV~~~-A~d~~eIKkaYRkLAl~lHPDKn~~~~------AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
.|||++|||++. ..|...|+++||+|.+.+|||+..... +.+.-..||+||.+|+||.+|+.|=..+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 599999999986 458999999999999999999986533 45567899999999999999999998876
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.75 E-value=1.6e-08 Score=94.32 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 85 HSIELIATQYRKLALLLSPERNRFPF------ADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 85 ~d~~eIKkaYRkLAl~lHPDKn~~~~------AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
.|..+|+++||+|++.||||+..... +...|..|++||++|+||.+|+.|+..+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 36789999999999999999965422 66889999999999999999999999886
No 63
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.69 E-value=2.3e-08 Score=105.94 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=63.1
Q ss_pred CCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 70 QYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF------PFADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 70 ~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~------~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
...|+|+|||++.++ +..+||++||+|+.++||||-+. ..-++.++.|++||..|+|...|..|-.++.
T Consensus 96 ~~fDPyEILGI~~~t-s~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 96 RGFDPYEILGIDQDT-SERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred cCCChHHhhcccCCC-cHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 458999999999998 88999999999999999999764 3578999999999999999999999998875
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=9.6e-08 Score=96.10 Aligned_cols=70 Identities=23% Similarity=0.321 Sum_probs=61.8
Q ss_pred CCCCChHhhhccccC---CCCHHHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 69 NQYHDWYAILQLARF---THSIELIATQYRKLALLLSPERNR---FPFADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~---A~d~~eIKkaYRkLAl~lHPDKn~---~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
.+..|+|.+|||+.. + +..+|.++.++.++.||||+.. +.+..+.|++|+.||+||+|+.+|..||..--
T Consensus 40 Wk~~DlYa~lgLskyR~ka-~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df 115 (379)
T COG5269 40 WKKVDLYALLGLSKYRTKA-IPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF 115 (379)
T ss_pred hhhhhHHHHhchHhhhcCC-CcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccc
Confidence 556899999999974 5 6789999999999999999974 35689999999999999999999999997654
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=2.2e-05 Score=90.12 Aligned_cols=54 Identities=28% Similarity=0.274 Sum_probs=47.1
Q ss_pred CCChHhhhccccC---CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhC
Q 011245 71 YHDWYAILQLARF---THSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILS 126 (490)
Q Consensus 71 ~~D~Y~ILgV~~~---A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLS 126 (490)
..+-|+||.|+-+ .++.+.||+||++||.+||||||| .-.+.|..|++||+.|+
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLS 1336 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHH
Confidence 4578999999865 335689999999999999999995 56789999999999998
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=6.1e-05 Score=74.88 Aligned_cols=56 Identities=14% Similarity=0.262 Sum_probs=51.1
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHH-HhCCc
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWS-ILSNP 128 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYe-vLSDp 128 (490)
..||.||||..++ +.++++.+|..|++.+|||........+.|..|.+||. ||+..
T Consensus 47 ~e~fril~v~e~~-~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 47 MECFRILGVEEGA-DADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHhcccccC-chhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 6899999999999 89999999999999999999877777889999999999 88643
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0026 Score=56.61 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=42.0
Q ss_pred hhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCc
Q 011245 76 AILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNP 128 (490)
Q Consensus 76 ~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp 128 (490)
-||||.++. +.+.||.++|++-+.-|||+--+|. .-..|+||+++|...
T Consensus 60 lIL~v~~s~-~k~KikeaHrriM~~NHPD~GGSPY---lAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTPSL-DKDKIKEAHRRIMLANHPDRGGSPY---LASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCccc-cHHHHHHHHHHHHHcCCCcCCCCHH---HHHHHHHHHHHHhcc
Confidence 499999988 8999999999999999999975543 446799999999754
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0055 Score=57.94 Aligned_cols=71 Identities=15% Similarity=0.271 Sum_probs=57.7
Q ss_pred CCCCChHhhhccccC-CCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 69 NQYHDWYAILQLARF-THSIELIATQYRKLALLLSPERNRF------PFADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~-A~d~~eIKkaYRkLAl~lHPDKn~~------~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
....+||.|+|.... .+++.-+.--|.-....||||+-.. .-|.+....|++||.+|.||-+|+.|=..+.
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~ 82 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK 82 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 345799999987764 4466667778999999999999432 2367779999999999999999999988775
No 69
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.22 E-value=0.0073 Score=65.44 Aligned_cols=41 Identities=22% Similarity=0.454 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcc--------hHHHHHHHHHHHHHhC
Q 011245 86 SIELIATQYRKLALLLSPERNRFPF--------ADRSFKLVYDAWSILS 126 (490)
Q Consensus 86 d~~eIKkaYRkLAl~lHPDKn~~~~--------AeeaFk~I~eAYevLS 126 (490)
+.+.|||+|||-.|.+||||.+..+ |++.|-++++||....
T Consensus 401 tp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 401 TPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred CHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 6799999999999999999987543 6777888888887543
No 70
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=95.60 E-value=0.0071 Score=43.42 Aligned_cols=33 Identities=15% Similarity=0.489 Sum_probs=28.1
Q ss_pred eeCcchhhhhcchhhhcC---ceeeccccCCceeee
Q 011245 238 TACPYCYILYEYPKAYED---CTLKCQNCKRAFHGV 270 (490)
Q Consensus 238 T~Cp~C~~~YEY~R~YlN---~~LrCqnC~k~F~A~ 270 (490)
+.||+|..+|+....-+. ..++|++|+..|.|+
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~~~ 38 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWYAR 38 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEEeC
Confidence 479999999999987663 359999999999874
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.081 Score=50.11 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=47.0
Q ss_pred CCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHHHh
Q 011245 70 QYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF--------PFADRSFKLVYDAWSIL 125 (490)
Q Consensus 70 ~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~--------~~AeeaFk~I~eAYevL 125 (490)
...|.|.+|++...+ +..+|+++||++....|||+-.. ..+++.++.|++||+.+
T Consensus 111 ~~~~~l~~l~~~~~~-~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 111 DREDALKVLGVEIKA-DQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred cchhHHHHhcCchhh-hHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 347999999999988 89999999999999999998542 34788899999998753
No 72
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=94.12 E-value=0.031 Score=40.51 Aligned_cols=32 Identities=22% Similarity=0.667 Sum_probs=27.8
Q ss_pred eeCcchhhhhcchhhh---cCceeeccccCCceee
Q 011245 238 TACPYCYILYEYPKAY---EDCTLKCQNCKRAFHG 269 (490)
Q Consensus 238 T~Cp~C~~~YEY~R~Y---lN~~LrCqnC~k~F~A 269 (490)
+.||.|.+.|+..-.= ....++|++|+..|.+
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~v 37 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFRV 37 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEeeC
Confidence 6899999999999884 3679999999999863
No 73
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=0.074 Score=50.37 Aligned_cols=67 Identities=24% Similarity=0.288 Sum_probs=51.2
Q ss_pred ChHhhhccccCC-CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 73 DWYAILQLARFT-HSIELIATQYRKLALLLSPERNRFPF------ADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 73 D~Y~ILgV~~~A-~d~~eIKkaYRkLAl~lHPDKn~~~~------AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
||+..+++.+.. .+.+.++..|+.+.+.+|||+....+ +-+.+..++.||.+|.|+-+|+.|=....
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 344445555432 25677899999999999999987543 33468889999999999999999987665
No 74
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.06 E-value=0.4 Score=32.00 Aligned_cols=33 Identities=24% Similarity=0.456 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPS 42 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~ 42 (490)
|+-+..+|..++..++++.|++.++++.+++|.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 456788999999999999999999999999986
No 75
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=90.83 E-value=0.14 Score=37.11 Aligned_cols=31 Identities=26% Similarity=0.681 Sum_probs=26.2
Q ss_pred eeCcchhhhhcchhhhc---CceeeccccCCcee
Q 011245 238 TACPYCYILYEYPKAYE---DCTLKCQNCKRAFH 268 (490)
Q Consensus 238 T~Cp~C~~~YEY~R~Yl---N~~LrCqnC~k~F~ 268 (490)
..||.|..+|+-.-.-| ...++|.+|+..|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 47999999999988855 45799999999884
No 76
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.12 E-value=0.8 Score=30.95 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPS 42 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~ 42 (490)
|.-|..+|..++..++++.|+..+.+|.+++|.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 566889999999999999999999999999985
No 77
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.43 E-value=1.2 Score=32.38 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHH
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVL 50 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlL 50 (490)
-++.+|+.++..|+++.|.+.++++.+++|....+...+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 467789999999999999999999999999976554443
No 78
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=87.52 E-value=0.81 Score=35.27 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
.|+-|..+|..++..++|+.|+..+.+|.+++|....+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~ 39 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEA 39 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 57889999999999999999999999999999986543
No 79
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=84.12 E-value=8.2 Score=41.62 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcccceeccCCCCCCChHhhhccccC
Q 011245 4 GFNRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTIIAGESIIITSNGNQYHDWYAILQLARF 83 (490)
Q Consensus 4 ~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvllAae~rv~~~~~~~~~D~Y~ILgV~~~ 83 (490)
..+..|+++-+++...+|..+.|..|+..+..|.+++|..=. .+..-+.+.+|.-+.. ..-.|+=.||.+.++
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~--aifrRaT~yLAmGksk-----~al~Dl~rVlelKpD 104 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ--AIFRRATVYLAMGKSK-----AALQDLSRVLELKPD 104 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH--HHHHHHHHHhhhcCCc-----cchhhHHHHHhcCcc
Confidence 457899999999999999999999999999999999998321 2333345666644332 344677777777765
Q ss_pred CCCHHHHHHH--------------HHHHHHHhCCCCCCCcchHHHHHHHHHHHHHh
Q 011245 84 THSIELIATQ--------------YRKLALLLSPERNRFPFADRSFKLVYDAWSIL 125 (490)
Q Consensus 84 A~d~~eIKka--------------YRkLAl~lHPDKn~~~~AeeaFk~I~eAYevL 125 (490)
- ..+-|.+. =-+.++...|..+....+.+...+|.+-|...
T Consensus 105 F-~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~ 159 (504)
T KOG0624|consen 105 F-MAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLV 159 (504)
T ss_pred H-HHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHH
Confidence 3 12222221 12234445555444455666666666655443
No 80
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=83.03 E-value=0.67 Score=43.80 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=23.1
Q ss_pred eCcchhhhh------cchhh--hcCceeeccccCCceeeeecc
Q 011245 239 ACPYCYILY------EYPKA--YEDCTLKCQNCKRAFHGVMIA 273 (490)
Q Consensus 239 ~Cp~C~~~Y------EY~R~--YlN~~LrCqnC~k~F~A~ev~ 273 (490)
.||||..-. .|.-. .+-..-.|++|++.|.++|.-
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~e~~ 44 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTFERV 44 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEeEec
Confidence 599999754 12212 222345699999999998753
No 81
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=82.93 E-value=0.65 Score=36.98 Aligned_cols=34 Identities=24% Similarity=0.591 Sum_probs=27.8
Q ss_pred ceeeeCcchh----hhhcchhhhcCceeeccccCCcee
Q 011245 235 RFWTACPYCY----ILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 235 TFWT~Cp~C~----~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
+-|-.||.|. .+..-.-+..|.-|-|+.|++..+
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~Etl 39 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQETL 39 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceEE
Confidence 4699999998 556666677899999999998765
No 82
>PRK11827 hypothetical protein; Provisional
Probab=82.26 E-value=0.73 Score=37.30 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=24.8
Q ss_pred eeCcchhhhhcchhhhcCceeeccccCCcee
Q 011245 238 TACPYCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 238 T~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
-+||.|+.-.+|... ...|.|..|+..|-
T Consensus 9 LaCP~ckg~L~~~~~--~~~Lic~~~~laYP 37 (60)
T PRK11827 9 IACPVCNGKLWYNQE--KQELICKLDNLAFP 37 (60)
T ss_pred eECCCCCCcCeEcCC--CCeEECCccCeecc
Confidence 489999999999764 67899999998774
No 83
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=82.04 E-value=3.4 Score=38.04 Aligned_cols=53 Identities=21% Similarity=0.111 Sum_probs=37.8
Q ss_pred ChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCch
Q 011245 73 DWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPA 129 (490)
Q Consensus 73 D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~ 129 (490)
.-..||+|++.. +.++|.+.|.+|-..-+|++. |..-.-..|..|.+.|....
T Consensus 59 EA~~ILnv~~~~-~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 59 EARQILNVKEEL-SREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHHT--G---SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcc-CHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHHH
Confidence 346899999977 899999999999999999975 55555667888888876443
No 84
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.82 E-value=3.1 Score=27.86 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDP 41 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P 41 (490)
|+-+..++..+...+|++.|...+.++.++.|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 45678899999999999999999999999887
No 85
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.79 E-value=5.4 Score=31.26 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 011245 13 WLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTIIA 58 (490)
Q Consensus 13 ~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvllA 58 (490)
+-.+|......+||..|++++..+.++.|.-.....|..+++..+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 3456777899999999999999999999999888888777766543
No 86
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.55 E-value=6.2 Score=41.23 Aligned_cols=40 Identities=28% Similarity=0.323 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 6 NRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 6 NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
++.+|++++.-.-++|+.++|..|+..+.+|..|+|+-..
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAV 116 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAV 116 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcch
Confidence 7889999999999999999999999999999999999654
No 87
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=78.45 E-value=1.1 Score=33.49 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=25.3
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCceee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFHG 269 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A 269 (490)
.|+.|...++|..... .++|+.|+..++-
T Consensus 5 ~C~~CG~~~~~~~~~~--~~~Cp~CG~~~~~ 33 (46)
T PRK00398 5 KCARCGREVELDEYGT--GVRCPYCGYRILF 33 (46)
T ss_pred ECCCCCCEEEECCCCC--ceECCCCCCeEEE
Confidence 7999999999987765 8999999988874
No 88
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=77.15 E-value=3.6 Score=31.35 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 14 LSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 14 l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
+..|..++..|+|+.|.+.++++.+.+|....+...++.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~ 39 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGR 39 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 357888999999999999999999999985444444333
No 89
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=76.88 E-value=59 Score=38.44 Aligned_cols=31 Identities=26% Similarity=0.139 Sum_probs=18.7
Q ss_pred CCCChHhhhccccCCCCHHHHHHHHHHHHHH
Q 011245 70 QYHDWYAILQLARFTHSIELIATQYRKLALL 100 (490)
Q Consensus 70 ~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~ 100 (490)
.+.=|..||+.--..-+.-.||.+|.+|.-.
T Consensus 400 aE~yfLSILQhlllirnDy~~rpqYykLIEe 430 (1102)
T KOG1924|consen 400 AEPYFLSILQHLLLIRNDYYIRPQYYKLIEE 430 (1102)
T ss_pred ccchHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 3445667777432111345799999998643
No 90
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=75.74 E-value=1.5 Score=35.60 Aligned_cols=29 Identities=34% Similarity=0.673 Sum_probs=26.0
Q ss_pred eeCcchhhhhcchhhhcCceeeccccCCcee
Q 011245 238 TACPYCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 238 T~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
-+||.|+....|.+. ...|.|..|++.|-
T Consensus 9 LaCP~~kg~L~~~~~--~~~L~c~~~~~aYp 37 (60)
T COG2835 9 LACPVCKGPLVYDEE--KQELICPRCKLAYP 37 (60)
T ss_pred eeccCcCCcceEecc--CCEEEecccCceee
Confidence 389999999999888 77999999999885
No 91
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=75.62 E-value=32 Score=37.79 Aligned_cols=18 Identities=50% Similarity=0.798 Sum_probs=14.6
Q ss_pred cccCCCCCCC-CCCccccc
Q 011245 338 VLISDSESDP-EESDDEWG 355 (490)
Q Consensus 338 ~~~~~~~~~~-~~~~~~~~ 355 (490)
||+||.+||+ +.|++||.
T Consensus 499 veysdseDdssefDe~dW~ 517 (518)
T KOG1830|consen 499 VEYSDSEDDSSEFDEDDWS 517 (518)
T ss_pred HHhccCccccccccccccc
Confidence 8999998777 66788993
No 92
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=74.56 E-value=14 Score=37.73 Aligned_cols=86 Identities=15% Similarity=0.259 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcccceeccCCCCCCChHhhhccccCCCCHHHH
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTIIAGESIIITSNGNQYHDWYAILQLARFTHSIELI 90 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvllAae~rv~~~~~~~~~D~Y~ILgV~~~A~d~~eI 90 (490)
..+....+.+|..+||.+|...+...+.+--.+.++.-+-.+. ..-.++|.. -.+.|
T Consensus 128 ~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~---------------~~L~e~~~~--------i~~~l 184 (291)
T PF10475_consen 128 QQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLS---------------SQLQETLEL--------IEEQL 184 (291)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHh---------------HHHHHHHHH--------HHHHH
Confidence 3445566788999999999999999887643333222111111 111233322 23567
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCc
Q 011245 91 ATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNP 128 (490)
Q Consensus 91 KkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp 128 (490)
...+.+++..+.|+ .|..|.+||..|++.
T Consensus 185 d~~l~~~~~~Fd~~---------~Y~~v~~AY~lLgk~ 213 (291)
T PF10475_consen 185 DSDLSKVCQDFDPD---------KYSKVQEAYQLLGKT 213 (291)
T ss_pred HHHHHHHHHhCCHH---------HHHHHHHHHHHHhhh
Confidence 77888888877765 688999999999965
No 93
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=74.39 E-value=1.4 Score=40.64 Aligned_cols=32 Identities=25% Similarity=0.597 Sum_probs=24.5
Q ss_pred eCcchhhhhcchhhhcC----ceeeccccCCceeee
Q 011245 239 ACPYCYILYEYPKAYED----CTLKCQNCKRAFHGV 270 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN----~~LrCqnC~k~F~A~ 270 (490)
.||.|...|.+.-.... ..+.||+|+....-.
T Consensus 101 ~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 101 KCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEED 136 (147)
T ss_pred ECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEEc
Confidence 89999999998755322 139999999887643
No 94
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=73.67 E-value=1.7 Score=44.96 Aligned_cols=34 Identities=26% Similarity=0.599 Sum_probs=25.2
Q ss_pred CceeeeCcchhhhhcchhhhcCceeeccccCCcee
Q 011245 234 PRFWTACPYCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 234 ~TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
..-|+.||.|....- .+.+....-.|+.|+.-|.
T Consensus 24 ~~~~~~c~~c~~~~~-~~~l~~~~~vc~~c~~h~r 57 (292)
T PRK05654 24 EGLWTKCPSCGQVLY-RKELEANLNVCPKCGHHMR 57 (292)
T ss_pred CCCeeECCCccchhh-HHHHHhcCCCCCCCCCCee
Confidence 457999999998764 4444444469999998875
No 95
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=73.60 E-value=1.4 Score=45.47 Aligned_cols=34 Identities=29% Similarity=0.692 Sum_probs=28.5
Q ss_pred CceeeeCcchhhhhcchhhhcCceeeccccCCcee
Q 011245 234 PRFWTACPYCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 234 ~TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
..-||-||.|..+ -|.+....+.-+|++|+.-|.
T Consensus 25 e~lw~KCp~c~~~-~y~~eL~~n~~vcp~c~~h~r 58 (294)
T COG0777 25 EGLWTKCPSCGEM-LYRKELESNLKVCPKCGHHMR 58 (294)
T ss_pred CCceeECCCccce-eeHHHHHhhhhcccccCcccc
Confidence 6789999999876 477888888899999987654
No 96
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=73.58 E-value=13 Score=32.96 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHH
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQV 49 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~ql 49 (490)
-+...|+.++..+++..|.+.+.++..++|..+.+-+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~ 101 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRL 101 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 34556677888999999999999999999998865444
No 97
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.40 E-value=6.3 Score=25.80 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPS 42 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~ 42 (490)
-++.+|...+..|+++.|++.+.+....+|.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3567888899999999999999999999985
No 98
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=73.07 E-value=1.5 Score=45.11 Aligned_cols=34 Identities=29% Similarity=0.708 Sum_probs=25.7
Q ss_pred CceeeeCcchhhhhcchhhhcCceeeccccCCcee
Q 011245 234 PRFWTACPYCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 234 ~TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
..-|+.||.|.... |.+......-.|++|+.-|.
T Consensus 23 ~~~~~~c~~c~~~~-~~~~l~~~~~vc~~c~~h~r 56 (285)
T TIGR00515 23 EGVWTKCPKCGQVL-YTKELERNLEVCPKCDHHMR 56 (285)
T ss_pred CCCeeECCCCcchh-hHHHHHhhCCCCCCCCCcCc
Confidence 34799999999875 44445555579999998776
No 99
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=72.94 E-value=39 Score=33.60 Aligned_cols=39 Identities=10% Similarity=0.006 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHH
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPN 47 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~ 47 (490)
.+..+...|+..+..|+++.|...++++...+|.-+.+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~ 69 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQ 69 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 355677888888888888888888888888888865443
No 100
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=72.70 E-value=1.6 Score=45.39 Aligned_cols=34 Identities=26% Similarity=0.673 Sum_probs=26.0
Q ss_pred CceeeeCcchhhhhcchhhhcCceeeccccCCcee
Q 011245 234 PRFWTACPYCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 234 ~TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
...||.||.|.... |.+.+....-.|++|+.-|.
T Consensus 35 ~~lw~kc~~C~~~~-~~~~l~~~~~vcp~c~~h~r 68 (296)
T CHL00174 35 KHLWVQCENCYGLN-YKKFLKSKMNICEQCGYHLK 68 (296)
T ss_pred CCCeeECCCccchh-hHHHHHHcCCCCCCCCCCcC
Confidence 45799999999875 55555566679999998665
No 101
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=70.13 E-value=5.9 Score=36.88 Aligned_cols=48 Identities=27% Similarity=0.209 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTII 57 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvll 57 (490)
+.++++.|++.+..||+.-|..++..+...+|......++.+-+-..+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999877777665543333
No 102
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=70.13 E-value=6.4 Score=30.18 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 011245 6 NRAEAERWLSVAEKVLSSH-DFQGARSFAIRAREYDP 41 (490)
Q Consensus 6 NkdEA~R~l~iAek~L~~~-D~~gAkrfa~KAq~L~P 41 (490)
+.+.+.-+..+|..++..+ ++..|++++.+|.+++|
T Consensus 33 ~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 33 DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777888888999999 79999999999999988
No 103
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=69.91 E-value=4.7 Score=41.56 Aligned_cols=54 Identities=24% Similarity=0.319 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHHhCCCCCC-----CcchHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 86 SIELIATQYRKLALLLSPERNR-----FPFADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 86 d~~eIKkaYRkLAl~lHPDKn~-----~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
+..+|+.+|+..++.+||++-. ....++.|+.|.+||+||++..+|..+|....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~ 63 (335)
T KOG0724|consen 5 SEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDK 63 (335)
T ss_pred cHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhhH
Confidence 5688999999999999999864 22467789999999999999777777776653
No 104
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=68.66 E-value=9.5 Score=22.72 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPS 42 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~ 42 (490)
-+..+|..++..+++..|...+.++..+.|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3567888899999999999999999888775
No 105
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=68.56 E-value=10 Score=29.33 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQV 49 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~ql 49 (490)
..-+...|..++..|++..|.+.+.++..+.|....+..+
T Consensus 29 ~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 29 PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3344445555555566666666666666555554443333
No 106
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=67.51 E-value=16 Score=38.29 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
..++..|..++..++|..|+.++.+|.+++|....+-..++.
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~ 44 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQ 44 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 357888999999999999999999999999997654433333
No 107
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=66.94 E-value=1.5 Score=46.25 Aligned_cols=35 Identities=29% Similarity=0.674 Sum_probs=28.5
Q ss_pred CCceeeeCcchhhhhcchhhhcCceeeccccCCcee
Q 011245 233 GPRFWTACPYCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 233 ~~TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
+--.-|+|..|+++|.-.-. +...-+|++|+..++
T Consensus 242 GKY~~TAC~rC~t~y~le~A-~~~~wrCpkCGg~ik 276 (403)
T COG1379 242 GKYHLTACSRCYTRYSLEEA-KSLRWRCPKCGGKIK 276 (403)
T ss_pred cchhHHHHHHhhhccCcchh-hhhcccCcccccchh
Confidence 34678999999999986554 566789999999776
No 108
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=66.17 E-value=80 Score=26.94 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHH
Q 011245 6 NRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVL 50 (490)
Q Consensus 6 NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlL 50 (490)
+.+.+......|..++..+++..|..++.++..++|........+
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 57 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGL 57 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 445667788899999999999999999999999999865444333
No 109
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=65.82 E-value=12 Score=26.19 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 011245 13 WLSVAEKVLSSHDFQGARSFAIRAREYD 40 (490)
Q Consensus 13 ~l~iAek~L~~~D~~gAkrfa~KAq~L~ 40 (490)
+..+|..+...||++.|..+++++..+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5678999999999999999999977554
No 110
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=65.40 E-value=9 Score=29.17 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=21.0
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchHHHHH
Q 011245 20 VLSSHDFQGARSFAIRAREYDPSFEAPNQVL 50 (490)
Q Consensus 20 ~L~~~D~~gAkrfa~KAq~L~P~le~~~qlL 50 (490)
+|..|+++.|.+++.++...+|....+...+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 31 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLL 31 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 4667777777777777777777755444433
No 111
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=64.55 E-value=2.7 Score=33.99 Aligned_cols=17 Identities=24% Similarity=0.612 Sum_probs=14.8
Q ss_pred hhcCceeeccccCCcee
Q 011245 252 AYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 252 ~YlN~~LrCqnC~k~F~ 268 (490)
..+.-.|.|++|++.|-
T Consensus 48 ~i~eg~L~Cp~c~r~YP 64 (68)
T PF03966_consen 48 EIVEGELICPECGREYP 64 (68)
T ss_dssp ETTTTEEEETTTTEEEE
T ss_pred cccCCEEEcCCCCCEEe
Confidence 56788999999999985
No 112
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=63.96 E-value=15 Score=27.89 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l 43 (490)
+.+.-+..++..++..|+++.|...++++..++|..
T Consensus 29 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 29 DNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 356677888889999999999999999999999963
No 113
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=63.17 E-value=11 Score=28.75 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHH
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVL 50 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlL 50 (490)
...-++.+|+.++..|+++.|+..+.++...+|..+....++
T Consensus 24 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 24 NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 345567899999999999999999999999999965554444
No 114
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=61.68 E-value=11 Score=43.94 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=8.2
Q ss_pred cCCcCccccccccccccC
Q 011245 410 SGGGGARVLRSSGKKQMG 427 (490)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~ 427 (490)
.|..++...-.+-|.|||
T Consensus 688 Kk~kel~ilDsKtaQnLs 705 (1102)
T KOG1924|consen 688 KKVKELRILDSKTAQNLS 705 (1102)
T ss_pred hhhhhheecchHHHHHHH
Confidence 333444444444555543
No 115
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=61.37 E-value=21 Score=38.08 Aligned_cols=42 Identities=17% Similarity=0.039 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 4 GFNRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 4 ~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
..++.||.-++..|...-..|..++|.++++.|..|.|+...
T Consensus 110 pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~ 151 (472)
T KOG3824|consen 110 PAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ 151 (472)
T ss_pred chhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH
Confidence 457889999999999999999999999999999999999664
No 116
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=61.19 E-value=4.9 Score=36.54 Aligned_cols=37 Identities=19% Similarity=0.464 Sum_probs=30.5
Q ss_pred CceeeeCcchhhhhcchhhhcCceeeccccCCceeee
Q 011245 234 PRFWTACPYCYILYEYPKAYEDCTLKCQNCKRAFHGV 270 (490)
Q Consensus 234 ~TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A~ 270 (490)
.+||-.|+.|...+...+..--...+|..|+..|+-+
T Consensus 120 ~~~~~~C~~C~~~~~r~~~~~~~~~~C~~C~~~l~~~ 156 (157)
T PF10263_consen 120 KKYVYRCPSCGREYKRHRRSKRKRYRCGRCGGPLVQV 156 (157)
T ss_pred cceEEEcCCCCCEeeeecccchhhEECCCCCCEEEEc
Confidence 5899999999999887777633467999999988754
No 117
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=61.10 E-value=99 Score=30.87 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHH
Q 011245 86 SIELIATQYRKLA 98 (490)
Q Consensus 86 d~~eIKkaYRkLA 98 (490)
+.+++++-|++..
T Consensus 82 ~~~~~~~YyKkhI 94 (205)
T PF12238_consen 82 GREKMTKYYKKHI 94 (205)
T ss_pred cHHHHHHHHHHhc
Confidence 3456666666643
No 118
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=60.88 E-value=35 Score=34.90 Aligned_cols=44 Identities=32% Similarity=0.332 Sum_probs=35.6
Q ss_pred HHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHH
Q 011245 7 RAEA-ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVL 50 (490)
Q Consensus 7 kdEA-~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlL 50 (490)
+.|| ..-+++|-..|+.||+..|+.-++||.+.+|+......++
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~ 75 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVR 75 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 4444 4457899999999999999999999999999976554443
No 119
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=60.79 E-value=23 Score=28.98 Aligned_cols=34 Identities=21% Similarity=0.119 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l 43 (490)
+.-+...|..++..++++.|...+.++...+|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 35 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS 35 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 4456788999999999999999999999998874
No 120
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=60.69 E-value=4.8 Score=28.54 Aligned_cols=24 Identities=29% Similarity=0.872 Sum_probs=22.2
Q ss_pred eCcchhhhhcchhhhcCceeeccccC
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCK 264 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~ 264 (490)
.|..|.++..|++. ...++|..|+
T Consensus 3 ~C~~C~t~L~yP~g--A~~vrCs~C~ 26 (31)
T TIGR01053 3 VCGGCRTLLMYPRG--ASSVRCALCQ 26 (31)
T ss_pred CcCCCCcEeecCCC--CCeEECCCCC
Confidence 69999999999998 8899999996
No 121
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=59.45 E-value=73 Score=36.19 Aligned_cols=122 Identities=8% Similarity=0.057 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH-------HhcccceeccCCCCCCChHhhhc--cccC
Q 011245 13 WLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTI-------IAGESIIITSNGNQYHDWYAILQ--LARF 83 (490)
Q Consensus 13 ~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvl-------lAae~rv~~~~~~~~~D~Y~ILg--V~~~ 83 (490)
+..+|..++..|+++.|...++++..++|....+...++.+-.. +..-.++... ......++-.++ +...
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~-~P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE-KGVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHC
Confidence 34556667888999999999999999998876554444332110 0000011000 011112232221 1111
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhc
Q 011245 84 THSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDL 138 (490)
Q Consensus 84 A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~ 138 (490)
. ..++-.+.|++ ++..+|+..+... +++-..+.+|++.+..+.++..+-..+
T Consensus 366 G-~~deA~~~l~~-al~~~P~~~~~~~-~ea~~~~~~~~~~~~~~~~~~~W~~~~ 417 (656)
T PRK15174 366 G-KTSEAESVFEH-YIQARASHLPQSF-EEGLLALDGQISAVNLPPERLDWAWEV 417 (656)
T ss_pred C-CHHHHHHHHHH-HHHhChhhchhhH-HHHHHHHHHHHHhcCCccchhhHHHHH
Confidence 2 34555556655 5667888664333 467788889999998887774444333
No 122
>PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC []. This domain may play a role in the regulation of transcription, via either repression of a prodeath pathway or activation of an antideath pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=59.32 E-value=4.8 Score=27.38 Aligned_cols=23 Identities=30% Similarity=0.866 Sum_probs=21.1
Q ss_pred CcchhhhhcchhhhcCceeeccccC
Q 011245 240 CPYCYILYEYPKAYEDCTLKCQNCK 264 (490)
Q Consensus 240 Cp~C~~~YEY~R~YlN~~LrCqnC~ 264 (490)
|..|.++..|++. ...++|..|+
T Consensus 1 C~~Cr~~L~yp~G--A~sVrCa~C~ 23 (25)
T PF06943_consen 1 CGGCRTLLMYPRG--APSVRCACCH 23 (25)
T ss_pred CCCCCceEEcCCC--CCCeECCccC
Confidence 7899999999999 8899999996
No 123
>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parallel sheet and helix conformation. Zinc binding occurs due to the presence of four cysteine residues positioned to bind the metal centre in a tetrahedral coordination geometry. The function of this domain is uncertain: it has been proposed that the zinc finger motif may be an essential part of the DNA binding domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3FLO_D 1N5G_A 1K0P_A 1K18_A.
Probab=56.66 E-value=4.5 Score=38.94 Aligned_cols=38 Identities=26% Similarity=0.664 Sum_probs=21.9
Q ss_pred CCceeeeCcchhhhhcchhhhc-------CceeeccccCCceeee
Q 011245 233 GPRFWTACPYCYILYEYPKAYE-------DCTLKCQNCKRAFHGV 270 (490)
Q Consensus 233 ~~TFWT~Cp~C~~~YEY~R~Yl-------N~~LrCqnC~k~F~A~ 270 (490)
-.-|+-.||+|.+.+.|..++. -.-+.|++|+..+...
T Consensus 14 c~~l~~~C~~C~~~~~f~g~~~~~~~~~~~~~~~C~~C~~~~~~~ 58 (188)
T PF08996_consen 14 CEPLKLTCPSCGTEFEFPGVFEEDGDDVSPSGLQCPNCSTPLSPA 58 (188)
T ss_dssp ---EEEE-TTT--EEEE-SSS--SSEEEETTEEEETTT--B--HH
T ss_pred CCceEeECCCCCCCccccccccCCccccccCcCcCCCCCCcCCHH
Confidence 4679999999999999988876 4478999999965543
No 124
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=54.95 E-value=6.6 Score=38.48 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=24.6
Q ss_pred ceeeeCcchhhhhcchhhhcCceeeccccCCcee
Q 011245 235 RFWTACPYCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 235 TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
--.-.|+.|....++ -+.+|.||+|+..=.
T Consensus 147 VI~A~CsrC~~~L~~----~~~~l~Cp~Cg~tEk 176 (188)
T COG1096 147 VIYARCSRCRAPLVK----KGNMLKCPNCGNTEK 176 (188)
T ss_pred EEEEEccCCCcceEE----cCcEEECCCCCCEEe
Confidence 456799999998888 588999999997543
No 125
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=54.88 E-value=24 Score=26.70 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 011245 14 LSVAEKVLSSHDFQGARSFAIRARE 38 (490)
Q Consensus 14 l~iAek~L~~~D~~gAkrfa~KAq~ 38 (490)
+++|+.++..||+++|+..+.....
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6789999999999999999999874
No 126
>PF14369 zf-RING_3: zinc-finger
Probab=54.58 E-value=7.5 Score=28.10 Aligned_cols=31 Identities=26% Similarity=0.814 Sum_probs=16.2
Q ss_pred ceeeeCcchhhhhcchhhhcCceeeccccCCcee
Q 011245 235 RFWTACPYCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 235 TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
+|| |-.|.....-... ..-.+.|+.|+..|+
T Consensus 2 ~yw--Ch~C~~~V~~~~~-~~~~~~CP~C~~gFv 32 (35)
T PF14369_consen 2 RYW--CHQCNRFVRIAPS-PDSDVACPRCHGGFV 32 (35)
T ss_pred CEe--CccCCCEeEeCcC-CCCCcCCcCCCCcEe
Confidence 455 5555543333211 122235888888886
No 127
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=53.78 E-value=8.9 Score=29.62 Aligned_cols=31 Identities=23% Similarity=0.806 Sum_probs=25.7
Q ss_pred eeeCcchhhhhcchhhhc-----CceeeccccCCce
Q 011245 237 WTACPYCYILYEYPKAYE-----DCTLKCQNCKRAF 267 (490)
Q Consensus 237 WT~Cp~C~~~YEY~R~Yl-----N~~LrCqnC~k~F 267 (490)
.++|.+|..+.|.+..+. .+.|+|-.|....
T Consensus 6 Fv~C~~C~~lLqlP~~~~~~~k~~~klrCGaCs~vl 41 (46)
T PF11331_consen 6 FVVCSSCFELLQLPAKFSLSKKNQQKLRCGACSEVL 41 (46)
T ss_pred EeECccHHHHHcCCCccCCCccceeEEeCCCCceeE
Confidence 479999999999999866 2379999998643
No 128
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=53.67 E-value=31 Score=28.20 Aligned_cols=34 Identities=9% Similarity=0.044 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
.-...++..++..++++.|...+.++..++|...
T Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence 3455677888999999999999999999999854
No 129
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=53.35 E-value=5.8 Score=38.15 Aligned_cols=30 Identities=23% Similarity=0.764 Sum_probs=26.2
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCceee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFHG 269 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A 269 (490)
+||.|..+|.|.-.. +....|+.|+....-
T Consensus 119 ~Cp~C~~rytf~eA~-~~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 119 FCPNCHIRFTFDEAM-EYGFRCPQCGEMLEE 148 (178)
T ss_pred ECCCCCcEEeHHHHh-hcCCcCCCCCCCCee
Confidence 899999999999874 568999999987764
No 130
>PRK05685 fliS flagellar protein FliS; Validated
Probab=53.13 E-value=62 Score=29.48 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYD 40 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~ 40 (490)
|.|++.+..|+..+..+|+..+...+.||+.+.
T Consensus 33 dgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii 65 (132)
T PRK05685 33 EGALSFLAQAKLAIEQGDIEAKGEYLSKAINII 65 (132)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 678999999999999999999999988887643
No 131
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=53.10 E-value=60 Score=31.10 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
+.++-|..++..++..++++.|...+.+|.++.|....+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~ 109 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAEL 109 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 456778899999999999999999999999999986543
No 132
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=52.64 E-value=30 Score=36.21 Aligned_cols=45 Identities=27% Similarity=0.228 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVA 53 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~ 53 (490)
.+.-+..+|..++..+++..|+..+.+|..++|.....-..++++
T Consensus 35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~ 79 (356)
T PLN03088 35 NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTA 79 (356)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 456678889999999999999999999999999866554444443
No 133
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=52.43 E-value=6.7 Score=35.12 Aligned_cols=28 Identities=21% Similarity=0.533 Sum_probs=16.3
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCceee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFHG 269 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A 269 (490)
+||.|-.+|==+.. .-+.||.|+..|..
T Consensus 11 ~Cp~CG~kFYDLnk---~PivCP~CG~~~~~ 38 (108)
T PF09538_consen 11 TCPSCGAKFYDLNK---DPIVCPKCGTEFPP 38 (108)
T ss_pred cCCCCcchhccCCC---CCccCCCCCCccCc
Confidence 56666666644433 34556666666654
No 134
>PF14353 CpXC: CpXC protein
Probab=52.33 E-value=7.1 Score=34.87 Aligned_cols=30 Identities=23% Similarity=0.653 Sum_probs=18.2
Q ss_pred eCcchhhhhcchhh-hcC----------------ceeeccccCCcee
Q 011245 239 ACPYCYILYEYPKA-YED----------------CTLKCQNCKRAFH 268 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~-YlN----------------~~LrCqnC~k~F~ 268 (490)
.||+|...+++... ++| ....||+|+..|.
T Consensus 3 tCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 3 TCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 57777777665432 222 1456888877775
No 135
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=52.29 E-value=32 Score=32.80 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
.+..+...|...|..||+..|...+.+....+|.-+.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~ 40 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY 40 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH
Confidence 5677888999999999999999999999999998543
No 136
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=51.88 E-value=6.8 Score=36.87 Aligned_cols=30 Identities=20% Similarity=0.587 Sum_probs=25.9
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCceee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFHG 269 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A 269 (490)
+||.|+.+|.|.-+.. ..-.|+.|+....-
T Consensus 111 ~Cp~c~~r~tf~eA~~-~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 111 ICPNMCVRFTFNEAME-LNFTCPRCGAMLDY 140 (158)
T ss_pred ECCCCCcEeeHHHHHH-cCCcCCCCCCEeee
Confidence 8999999999999864 57999999987653
No 137
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=51.73 E-value=12 Score=29.64 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=33.6
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCceeeeeccCC
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFHGVMIASP 275 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A~ev~~p 275 (490)
.||.|-.-.+....+++-.+-|+.|+-.|.-+.+.++
T Consensus 4 ~CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv~~~p~ 40 (54)
T TIGR01206 4 ECPDCGAEIELENPELGELVICDECGAELEVVSLDPL 40 (54)
T ss_pred CCCCCCCEEecCCCccCCEEeCCCCCCEEEEEeCCCC
Confidence 7999999999999999999999999999998877663
No 138
>PF13446 RPT: A repeated domain in UCH-protein
Probab=51.46 E-value=26 Score=27.55 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.5
Q ss_pred ChHhhhccccCCCCHHHHHHHHHHHHH
Q 011245 73 DWYAILQLARFTHSIELIATQYRKLAL 99 (490)
Q Consensus 73 D~Y~ILgV~~~A~d~~eIKkaYRkLAl 99 (490)
+-|++|||++.. +.+.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~~~-~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDT-DDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCC-CHHHHHHHHHHHHH
Confidence 459999999887 77999999998877
No 139
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=51.44 E-value=30 Score=35.12 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 5 FNRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 5 ~NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
-++++|-+++.-.-.+|..|||.+|..-|..|..++|.+..
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~ 130 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST 130 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH
Confidence 35899999999999999999999999999999999999654
No 140
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=51.05 E-value=7.2 Score=37.57 Aligned_cols=118 Identities=16% Similarity=0.180 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHH--------HHHHhcccc----------eec----
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVA--------DTIIAGESI----------IIT---- 65 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~--------dvllAae~r----------v~~---- 65 (490)
.++.+++.++...... +...|.+++.++...++.... ....... +++.....+ ...
T Consensus 3 ~d~~~~l~i~~~as~~-~i~ka~~~~a~~~hpdk~~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~ 80 (306)
T KOG0714|consen 3 KDYYKILGIARSASEE-DIKKAYRKLALKYHPDKNPSP-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSF 80 (306)
T ss_pred ccHHHHhCccccccHH-HHHHHHHHHHHhhCCCCCCCc-hhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCC
Confidence 4678899999887888 999999999998888886554 1111110 111110000 000
Q ss_pred -----------cCCCCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhh
Q 011245 66 -----------SNGNQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMY 134 (490)
Q Consensus 66 -----------~~~~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~Y 134 (490)
.......+||++||+.....+. .+.|+ |++..++ ...|..+..+..+|.++ .|..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~ 147 (306)
T KOG0714|consen 81 SSSFTSELFYFLFRKPDKDFYEFFGVSSPFSGS---KKGYR--------DKNAAPG-EEAFKSEGKAFQSLYGP-KRKQY 147 (306)
T ss_pred CCCCCCCcceeccCchhhhHHHHhCCCCCCccc---cccCC--------ccccccC-ccccccccccccccCCC-ccccc
Confidence 0012256799999977655222 45555 6665555 78889999999999999 99999
Q ss_pred hhhccc
Q 011245 135 DTDLQL 140 (490)
Q Consensus 135 D~~~~~ 140 (490)
|.....
T Consensus 148 ~~~~~~ 153 (306)
T KOG0714|consen 148 DSSGSD 153 (306)
T ss_pred cccccc
Confidence 987653
No 141
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=50.95 E-value=1.1e+02 Score=26.05 Aligned_cols=36 Identities=14% Similarity=0.293 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l 43 (490)
+.......+|+.++..|++++|...+..+.+.++..
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 455677889999999999999999999999999886
No 142
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.45 E-value=40 Score=33.44 Aligned_cols=41 Identities=22% Similarity=0.112 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 4 GFNRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 4 ~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
++.|--..=.+++|+.++..||++.|.++++++..+|-...
T Consensus 172 ~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg 212 (247)
T PF11817_consen 172 GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG 212 (247)
T ss_pred ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC
Confidence 34566667778999999999999999999999987776533
No 143
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=50.25 E-value=53 Score=32.68 Aligned_cols=93 Identities=13% Similarity=0.061 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcccceeccCCCCCCChHhhhccccCCCCHHHHHH
Q 011245 13 WLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTIIAGESIIITSNGNQYHDWYAILQLARFTHSIELIAT 92 (490)
Q Consensus 13 ~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvllAae~rv~~~~~~~~~D~Y~ILgV~~~A~d~~eIKk 92 (490)
.+.+|..++..+|+..|...+++..+++|..+.++..+-+..... . . .....+=..+.++....|....++
T Consensus 72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~--~-~------~~~~~~~~~~~~~~~~rD~~~~~~ 142 (243)
T PRK10866 72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN--M-A------LDDSALQGFFGVDRSDRDPQHARA 142 (243)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh--h-h------cchhhhhhccCCCccccCHHHHHH
Confidence 568889999999999999999999999999887665443322210 0 0 000111123445544336677887
Q ss_pred HHHHHHHH--hCCCCCCCcchHHH
Q 011245 93 QYRKLALL--LSPERNRFPFADRS 114 (490)
Q Consensus 93 aYRkLAl~--lHPDKn~~~~Aeea 114 (490)
|+..|..+ .+|+..-.+.|...
T Consensus 143 A~~~~~~li~~yP~S~ya~~A~~r 166 (243)
T PRK10866 143 AFRDFSKLVRGYPNSQYTTDATKR 166 (243)
T ss_pred HHHHHHHHHHHCcCChhHHHHHHH
Confidence 76655443 47876433334433
No 144
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=49.13 E-value=42 Score=22.75 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPS 42 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~ 42 (490)
|.-+..+|..++..|++..|+.+++++..+.-.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 345667888999999999999999998875533
No 145
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=49.11 E-value=38 Score=26.02 Aligned_cols=37 Identities=24% Similarity=0.148 Sum_probs=29.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 011245 17 AEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVA 53 (490)
Q Consensus 17 Aek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~ 53 (490)
+..++..+|+..|.+.+.++..++|.....-...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 38 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARC 38 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 4568999999999999999999999965544444443
No 146
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=47.16 E-value=13 Score=36.75 Aligned_cols=37 Identities=16% Similarity=0.488 Sum_probs=25.4
Q ss_pred eeeCcchhhhhcchhhhc-----CceeeccccCCceeeeeccC
Q 011245 237 WTACPYCYILYEYPKAYE-----DCTLKCQNCKRAFHGVMIAS 274 (490)
Q Consensus 237 WT~Cp~C~~~YEY~R~Yl-----N~~LrCqnC~k~F~A~ev~~ 274 (490)
.-.||.|. .-|.....| +-.++|.+|+.-|.|.-..+
T Consensus 6 y~~Cp~Cg-~eev~hEVik~~g~~~lvrC~eCG~V~~~~i~~~ 47 (201)
T COG1326 6 YIECPSCG-SEEVSHEVIKERGREPLVRCEECGTVHPAIIKTP 47 (201)
T ss_pred EEECCCCC-cchhhHHHHHhcCCceEEEccCCCcEeeceeecc
Confidence 45799999 444433433 34899999999997744333
No 147
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=47.06 E-value=85 Score=29.52 Aligned_cols=35 Identities=14% Similarity=0.064 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
+..+...|+..|..|+|..|.+.++....-+|.-+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ 44 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE 44 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc
Confidence 45567778888888888888888888888888743
No 148
>PLN02189 cellulose synthase
Probab=46.80 E-value=12 Score=44.83 Aligned_cols=43 Identities=35% Similarity=0.731 Sum_probs=33.8
Q ss_pred CCceeeeCc-----chhhhhcchhhhcCceeeccccCCceeeeeccCCCCCC
Q 011245 233 GPRFWTACP-----YCYILYEYPKAYEDCTLKCQNCKRAFHGVMIASPPVTE 279 (490)
Q Consensus 233 ~~TFWT~Cp-----~C~~~YEY~R~YlN~~LrCqnC~k~F~A~ev~~pp~~g 279 (490)
+..| .+|. -|+-.|||.|. +-+-.|+.|+..|..+. ..|.+.|
T Consensus 50 g~~f-vaC~~C~fpvCr~Cyeyer~--eg~q~CpqCkt~Y~r~k-gs~~v~g 97 (1040)
T PLN02189 50 GDLF-VACNECGFPVCRPCYEYERR--EGTQNCPQCKTRYKRLK-GSPRVEG 97 (1040)
T ss_pred CCEE-EeeccCCCccccchhhhhhh--cCCccCcccCCchhhcc-CCCCcCC
Confidence 4556 7776 67999999999 66678999999999766 5666644
No 149
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=46.44 E-value=43 Score=36.41 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcccceeccCCCCCCChHhhhccccCCCCHHHHHHH
Q 011245 14 LSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTIIAGESIIITSNGNQYHDWYAILQLARFTHSIELIATQ 93 (490)
Q Consensus 14 l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvllAae~rv~~~~~~~~~D~Y~ILgV~~~A~d~~eIKka 93 (490)
+.+|-.+|+.++|..|+....++++++|.-.. .|-.--..+++...-- ....||-.+|.|.|.. .+|+.+
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K--ALyRrG~A~l~~~e~~-----~A~~df~ka~k~~P~N---ka~~~e 330 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPNNVK--ALYRRGQALLALGEYD-----LARDDFQKALKLEPSN---KAARAE 330 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHhhccHH-----HHHHHHHHHHHhCCCc---HHHHHH
Confidence 57888999999999999999999999998432 1111112222111000 2246888899999853 567777
Q ss_pred HHHHHHHhC
Q 011245 94 YRKLALLLS 102 (490)
Q Consensus 94 YRkLAl~lH 102 (490)
..+|..+.+
T Consensus 331 l~~l~~k~~ 339 (397)
T KOG0543|consen 331 LIKLKQKIR 339 (397)
T ss_pred HHHHHHHHH
Confidence 777766543
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=46.34 E-value=69 Score=23.19 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 13 WLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 13 ~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
+..+|..++..+++..|..++.++..+.|...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 34 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA 34 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH
Confidence 56788889999999999999999999988764
No 151
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=45.67 E-value=8.5 Score=28.42 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=19.7
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCc
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRA 266 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~ 266 (490)
.||.|...+ ..-.+..-.+.|.+|+--
T Consensus 2 ~Cp~Cg~~~-~~~D~~~g~~vC~~CG~V 28 (43)
T PF08271_consen 2 KCPNCGSKE-IVFDPERGELVCPNCGLV 28 (43)
T ss_dssp SBTTTSSSE-EEEETTTTEEEETTT-BB
T ss_pred CCcCCcCCc-eEEcCCCCeEECCCCCCE
Confidence 599999877 444467888999999643
No 152
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=44.21 E-value=71 Score=28.82 Aligned_cols=45 Identities=18% Similarity=0.112 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
..+.-+..+|..++..|++..|..++.+|..+.|.....-.-+.+
T Consensus 56 ~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~ 100 (144)
T PRK15359 56 WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGV 100 (144)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 356667888888999999999999999999999987654444444
No 153
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=43.78 E-value=75 Score=27.11 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
..-+..+|..++..+++..|...+.++..++|........++.
T Consensus 51 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 93 (135)
T TIGR02552 51 SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 3445566666667777777777777777777765443333333
No 154
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=42.31 E-value=50 Score=35.93 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVAD 54 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~d 54 (490)
..+...++.+|..++|+.|+.+++||+.+.|.-..+..-|.+|.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34567788899999999999999999999999765544444443
No 155
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=42.30 E-value=49 Score=28.43 Aligned_cols=32 Identities=31% Similarity=0.352 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREY 39 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L 39 (490)
.+|...|..|+..|..+||..|+.++..|+..
T Consensus 43 ~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 43 KEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 47889999999999999999999999998864
No 156
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=42.21 E-value=1.1e+02 Score=26.64 Aligned_cols=43 Identities=28% Similarity=0.271 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHH
Q 011245 7 RAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVL 50 (490)
Q Consensus 7 kdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlL 50 (490)
++.+.+++..+-..+.+||+..|.+.+.++.+.. ..+.+..++
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~-~~~~l~~L~ 98 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLS-DNPLLNYLL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCHHHHHHH
Confidence 4678899999999999999999999999998763 333444443
No 157
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=41.93 E-value=48 Score=32.49 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=31.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCc
Q 011245 81 ARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNP 128 (490)
Q Consensus 81 ~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp 128 (490)
+++| +.+||.+|+.+|...|-- .++.-..|..||+.+-=.
T Consensus 1 S~~A-SfeEIq~Arn~ll~~y~g-------d~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDA-SFEEIQAARNRLLAQYAG-------DEKSREAIEAAYDAILME 40 (194)
T ss_pred CCCC-CHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHH
Confidence 3567 899999999999998843 356777899999987533
No 158
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.49 E-value=1e+02 Score=34.90 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTII 57 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvll 57 (490)
++|..++...-+.+.++.|+.|++++..|..++|.-+..=+-++.|-+.+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~l 162 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESL 162 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHH
Confidence 47888899999999999999999999999999999655445555555443
No 159
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=41.43 E-value=2.3e+02 Score=31.50 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPS 42 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~ 42 (490)
.|..+++.+..++..++|..|...+.+|..+.|.
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~ 159 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD 159 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 5788999999999999999999999999999996
No 160
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=40.65 E-value=12 Score=26.58 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=20.9
Q ss_pred eCcchhhhhcchhhhc-CceeeccccCCc
Q 011245 239 ACPYCYILYEYPKAYE-DCTLKCQNCKRA 266 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~Yl-N~~LrCqnC~k~ 266 (490)
.|+.|...||...... ...+.|+.|+..
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~ 35 (41)
T smart00834 7 RCEDCGHTFEVLQKISDDPLATCPECGGD 35 (41)
T ss_pred EcCCCCCEEEEEEecCCCCCCCCCCCCCc
Confidence 7888888888776543 667778888873
No 161
>PLN02436 cellulose synthase A
Probab=40.19 E-value=18 Score=43.63 Aligned_cols=44 Identities=32% Similarity=0.732 Sum_probs=34.0
Q ss_pred CCCceeeeCc-----chhhhhcchhhhcCceeeccccCCceeeeeccCCCCCC
Q 011245 232 EGPRFWTACP-----YCYILYEYPKAYEDCTLKCQNCKRAFHGVMIASPPVTE 279 (490)
Q Consensus 232 ~~~TFWT~Cp-----~C~~~YEY~R~YlN~~LrCqnC~k~F~A~ev~~pp~~g 279 (490)
.++-| .+|. -|+-.|||.|. +-+-.|+.|+..|..+. ..|++.|
T Consensus 51 dGe~F-VACn~C~fpvCr~Cyeyer~--eg~~~Cpqckt~Y~r~k-gs~~~~~ 99 (1094)
T PLN02436 51 DGEPF-VACNECAFPVCRPCYEYERR--EGNQACPQCKTRYKRIK-GSPRVEG 99 (1094)
T ss_pred CCCEE-EeeccCCCccccchhhhhhh--cCCccCcccCCchhhcc-CCCCcCC
Confidence 34556 7886 56889999999 66678999999999776 5666644
No 162
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=39.77 E-value=1.9e+02 Score=33.55 Aligned_cols=118 Identities=12% Similarity=0.000 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHH--------HHHHhcccceeccCCCCCCChHhhhccc
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVA--------DTIIAGESIIITSNGNQYHDWYAILQLA 81 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~--------dvllAae~rv~~~~~~~~~D~Y~ILgV~ 81 (490)
++-.+-+|+..++.|.++.|...++++.+++|....+...++.+ +.+..+++.+. ......+.+-+|+.-
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHH
Confidence 45556677888999999999999999999999977644333221 11111222220 001222333333321
Q ss_pred --cCCCCHHHHHHHHHHHHHHhCCCCCCC-----------cchHHHHHHHHHHHHHhCCchhh
Q 011245 82 --RFTHSIELIATQYRKLALLLSPERNRF-----------PFADRSFKLVYDAWSILSNPARK 131 (490)
Q Consensus 82 --~~A~d~~eIKkaYRkLAl~lHPDKn~~-----------~~AeeaFk~I~eAYevLSDp~kR 131 (490)
... ..++--..|+++.. .|||--.. ...+++...+..|.+..++-.|+
T Consensus 164 l~~~g-~~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 164 WDEIG-QSEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHhc-chHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 112 24677889999988 89984221 12556666677777777877765
No 163
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun
Probab=39.60 E-value=16 Score=33.91 Aligned_cols=31 Identities=23% Similarity=0.617 Sum_probs=23.5
Q ss_pred CceeeeCcchhhhhcchhhhcCceeeccccCCce
Q 011245 234 PRFWTACPYCYILYEYPKAYEDCTLKCQNCKRAF 267 (490)
Q Consensus 234 ~TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F 267 (490)
.-|+.+||.|+..-... ....-+|..|++.+
T Consensus 31 ~~~Y~aC~~C~kkv~~~---~~~~~~C~~C~~~~ 61 (166)
T cd04476 31 NWWYPACPGCNKKVVEE---GNGTYRCEKCNKSV 61 (166)
T ss_pred CeEEccccccCcccEeC---CCCcEECCCCCCcC
Confidence 46788999998875532 12678999999886
No 164
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=39.46 E-value=18 Score=27.72 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=21.4
Q ss_pred eeeCc--chhhhhcchhhhcCceeeccccCCcee
Q 011245 237 WTACP--YCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 237 WT~Cp--~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
|.-|| .|....+.........+.|+.|+..|-
T Consensus 18 ~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC 51 (64)
T smart00647 18 LKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFC 51 (64)
T ss_pred ccCCCCCCCcceEEecCCCCCCeeECCCCCCeEC
Confidence 45688 887766665333456788888877664
No 165
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=38.80 E-value=1.8e+02 Score=32.27 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
+.++-+..++..++..++|+.|...+++|.++.|....
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae 110 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE 110 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH
Confidence 46788999999999999999999999999999999753
No 166
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.61 E-value=1e+02 Score=31.36 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcccceeccCCCCCCChHhhhccccCCCC
Q 011245 7 RAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTIIAGESIIITSNGNQYHDWYAILQLARFTHS 86 (490)
Q Consensus 7 kdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvllAae~rv~~~~~~~~~D~Y~ILgV~~~A~d 86 (490)
+..++-+..+|..+|..+....|+..+.||.+|.|+...+ |+.-+..+-..+.-- ..-.||-.||.++|.-
T Consensus 131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA--l~RRAeayek~ek~e-----ealeDyKki~E~dPs~-- 201 (271)
T KOG4234|consen 131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA--LERRAEAYEKMEKYE-----EALEDYKKILESDPSR-- 201 (271)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH--HHHHHHHHHhhhhHH-----HHHHHHHHHHHhCcch--
Confidence 3456667788999999999999999999999999997642 333333333222211 3346999999999844
Q ss_pred HHHHHHHHHHH
Q 011245 87 IELIATQYRKL 97 (490)
Q Consensus 87 ~~eIKkaYRkL 97 (490)
.+.+++-++|
T Consensus 202 -~ear~~i~rl 211 (271)
T KOG4234|consen 202 -REAREAIARL 211 (271)
T ss_pred -HHHHHHHHhc
Confidence 5777777776
No 167
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=38.54 E-value=52 Score=33.21 Aligned_cols=50 Identities=22% Similarity=0.475 Sum_probs=34.4
Q ss_pred CCceeeeCcchhhhhcchhhhcCceee---------ccccCCceee-eeccCCC--CCCCCcccc
Q 011245 233 GPRFWTACPYCYILYEYPKAYEDCTLK---------CQNCKRAFHG-VMIASPP--VTEKDTYFC 285 (490)
Q Consensus 233 ~~TFWT~Cp~C~~~YEY~R~YlN~~Lr---------CqnC~k~F~A-~ev~~pp--~~g~~~~~~ 285 (490)
...| .|.-|...|-|.|. ||..|. |..|+|.|.- +++.+-- -.|...|-|
T Consensus 115 ~d~f--tCrvCgK~F~lQRm-lnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc 176 (267)
T KOG3576|consen 115 QDSF--TCRVCGKKFGLQRM-LNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKC 176 (267)
T ss_pred CCee--eeehhhhhhhHHHH-HHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccch
Confidence 4567 89999999999987 566555 5669999974 3444332 255555555
No 168
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=37.70 E-value=20 Score=28.30 Aligned_cols=32 Identities=19% Similarity=0.604 Sum_probs=25.3
Q ss_pred CceeeeCcchhhhhcch--hhhcCceeeccccCC
Q 011245 234 PRFWTACPYCYILYEYP--KAYEDCTLKCQNCKR 265 (490)
Q Consensus 234 ~TFWT~Cp~C~~~YEY~--R~YlN~~LrCqnC~k 265 (490)
..+=.+|..|....-.. ..+..-+-+|+.|+-
T Consensus 19 ~r~aLIC~~C~~hNGla~~~~~~~i~y~C~~Cg~ 52 (54)
T PF10058_consen 19 NRYALICSKCFSHNGLAPKEEFEEIQYRCPYCGA 52 (54)
T ss_pred CceeEECcccchhhcccccccCCceEEEcCCCCC
Confidence 45667999999887766 667777899999973
No 169
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=37.69 E-value=68 Score=30.31 Aligned_cols=31 Identities=23% Similarity=0.062 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 14 LSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 14 l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
+.+|..++..|++..|...+.++...+|..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTP 200 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCc
Confidence 4678888999999999999999999999854
No 170
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=37.47 E-value=36 Score=23.85 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 011245 1 MATGFNRAEAERWLSVAEKVLSSHDFQGARSFA 33 (490)
Q Consensus 1 M~m~~NkdEA~R~l~iAek~L~~~D~~gAkrfa 33 (490)
|.||..++++.+++..+ .+|.+.|..++
T Consensus 9 ~~mGf~~~~~~~AL~~~-----~~d~~~A~~~L 36 (38)
T cd00194 9 LEMGFSREEARKALRAT-----NNNVERAVEWL 36 (38)
T ss_pred HHcCCCHHHHHHHHHHh-----CCCHHHHHHHH
Confidence 46899999999998755 36888887765
No 171
>PLN02400 cellulose synthase
Probab=36.98 E-value=18 Score=43.58 Aligned_cols=43 Identities=37% Similarity=0.692 Sum_probs=33.9
Q ss_pred CCceeeeCc-----chhhhhcchhhhcCceeeccccCCceeeeeccCCCCCC
Q 011245 233 GPRFWTACP-----YCYILYEYPKAYEDCTLKCQNCKRAFHGVMIASPPVTE 279 (490)
Q Consensus 233 ~~TFWT~Cp-----~C~~~YEY~R~YlN~~LrCqnC~k~F~A~ev~~pp~~g 279 (490)
++-| .+|. -|+-.|||.|. +-+-.|+.|+-.|.... ..|.|+|
T Consensus 52 Ge~F-VAC~eCaFPVCRpCYEYERk--eGnq~CPQCkTrYkR~K-gsprV~G 99 (1085)
T PLN02400 52 GDVF-VACNECAFPVCRPCYEYERK--DGTQCCPQCKTRYRRHK-GSPRVEG 99 (1085)
T ss_pred CCEE-EEEccCCCccccchhheecc--cCCccCcccCCcccccc-CCCCCCc
Confidence 4556 6774 56899999999 66778999999999875 6777755
No 172
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=36.95 E-value=20 Score=28.54 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=23.9
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCceee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFHG 269 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A 269 (490)
.|+.|....+.. --...+.|++|+..+.|
T Consensus 30 ~C~~CG~~~~~~--~~~r~~~C~~Cg~~~~r 58 (69)
T PF07282_consen 30 TCPRCGHRNKKR--RSGRVFTCPNCGFEMDR 58 (69)
T ss_pred CccCcccccccc--cccceEEcCCCCCEECc
Confidence 699999998883 34789999999988765
No 173
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=36.64 E-value=16 Score=33.98 Aligned_cols=29 Identities=10% Similarity=0.008 Sum_probs=18.2
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCceeee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFHGV 270 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A~ 270 (490)
+||.|..+|=-+.. .-+.|+.|+..|...
T Consensus 11 ~Cp~cg~kFYDLnk---~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 11 ICPNTGSKFYDLNR---RPAVSPYTGEQFPPE 39 (129)
T ss_pred cCCCcCccccccCC---CCccCCCcCCccCcc
Confidence 67777777644332 466777777776543
No 174
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=36.58 E-value=16 Score=24.90 Aligned_cols=25 Identities=24% Similarity=0.614 Sum_probs=16.4
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCceee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFHG 269 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A 269 (490)
.||.|.... -.....|++|+-.|.|
T Consensus 2 ~CP~C~~~V------~~~~~~Cp~CG~~F~~ 26 (26)
T PF10571_consen 2 TCPECGAEV------PESAKFCPHCGYDFEA 26 (26)
T ss_pred cCCCCcCCc------hhhcCcCCCCCCCCcC
Confidence 367776543 3455678888888864
No 175
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=36.32 E-value=17 Score=43.85 Aligned_cols=43 Identities=35% Similarity=0.774 Sum_probs=33.0
Q ss_pred CCceeeeC-----cchhhhhcchhhhcCceeeccccCCceeeeeccCCCCCC
Q 011245 233 GPRFWTAC-----PYCYILYEYPKAYEDCTLKCQNCKRAFHGVMIASPPVTE 279 (490)
Q Consensus 233 ~~TFWT~C-----p~C~~~YEY~R~YlN~~LrCqnC~k~F~A~ev~~pp~~g 279 (490)
++-| -+| |-|+-.|||.|. +-+-.|+.|+-.|.... ..|.|+|
T Consensus 33 Ge~F-VAC~eC~FPVCrpCYEYEr~--eG~q~CPqCktrYkr~k-gsprv~g 80 (1079)
T PLN02638 33 GEPF-VACDVCAFPVCRPCYEYERK--DGNQSCPQCKTKYKRHK-GSPAILG 80 (1079)
T ss_pred CCEE-EEeccCCCccccchhhhhhh--cCCccCCccCCchhhhc-CCCCcCc
Confidence 4556 566 456899999999 66678999999999766 5666644
No 176
>PRK12370 invasion protein regulator; Provisional
Probab=35.92 E-value=3e+02 Score=30.46 Aligned_cols=35 Identities=6% Similarity=-0.091 Sum_probs=26.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHH
Q 011245 16 VAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVL 50 (490)
Q Consensus 16 iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlL 50 (490)
+|..++..++++.|...+++|.++.|.....-..+
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l 378 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLLSPISADIKYYY 378 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34456778999999999999999999966544333
No 177
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=35.67 E-value=1.5e+02 Score=30.93 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcccceeccCCCCCCChHhhhccccCCCCH
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTIIAGESIIITSNGNQYHDWYAILQLARFTHSI 87 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvllAae~rv~~~~~~~~~D~Y~ILgV~~~A~d~ 87 (490)
..++-|.-+++..|..+++..|..-|.+|.+|.|.-. +.++...+++..+.-. . ..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~--~~~~g~aeaL~~~a~~---------------------~-~t 209 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP--EILLGLAEALYYQAGQ---------------------Q-MT 209 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCC---------------------c-cc
Confidence 4678899999999999999999999999999999854 3455666666543211 0 12
Q ss_pred HHHHHHHHHHHHHhCCCCCC------CcchHHHHHHHHHHHHHhC
Q 011245 88 ELIATQYRKLALLLSPERNR------FPFADRSFKLVYDAWSILS 126 (490)
Q Consensus 88 ~eIKkaYRkLAl~lHPDKn~------~~~AeeaFk~I~eAYevLS 126 (490)
.+.+..+++...+=|-|--. ....+..|+.-..+|+.|-
T Consensus 210 a~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 210 AKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 45666666554433332211 0234455677777888774
No 178
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=34.78 E-value=19 Score=33.02 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=21.4
Q ss_pred eeCcchhhhh-cchhhhc--CceeeccccCCceee
Q 011245 238 TACPYCYILY-EYPKAYE--DCTLKCQNCKRAFHG 269 (490)
Q Consensus 238 T~Cp~C~~~Y-EY~R~Yl--N~~LrCqnC~k~F~A 269 (490)
..||+|..-| .=...+. -..-+|+.|++.|.-
T Consensus 31 ~~cP~C~s~~~~k~g~~~~~~qRyrC~~C~~tf~~ 65 (129)
T COG3677 31 VNCPRCKSSNVVKIGGIRRGHQRYKCKSCGSTFTV 65 (129)
T ss_pred CcCCCCCccceeeECCccccccccccCCcCcceee
Confidence 4799998877 1111122 346679999999984
No 179
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=34.40 E-value=2.4e+02 Score=26.79 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHH-HHhcccceeccCCCCCCChHhhhccccCCCCHH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADT-IIAGESIIITSNGNQYHDWYAILQLARFTHSIE 88 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dv-llAae~rv~~~~~~~~~D~Y~ILgV~~~A~d~~ 88 (490)
..-.+.+|...+..+|+..|...+.+-.+.+|..+.++..+=+... .... +..+|-..+ |..
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~--------------~~~~~~~~~---D~~ 104 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ--------------IPGILRSDR---DQT 104 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH--------------HHHHH-TT------H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh--------------Cccchhccc---ChH
Confidence 3456788999999999999999999999999997765544322211 1110 111221122 456
Q ss_pred HHHHHHHHHHH--HhCCCCCCCcchHHHHHHHHHHHHHhC
Q 011245 89 LIATQYRKLAL--LLSPERNRFPFADRSFKLVYDAWSILS 126 (490)
Q Consensus 89 eIKkaYRkLAl--~lHPDKn~~~~AeeaFk~I~eAYevLS 126 (490)
.+++++..+-. ..+|+. +.+.++=+.|.+..+.|.
T Consensus 105 ~~~~A~~~~~~li~~yP~S---~y~~~A~~~l~~l~~~la 141 (203)
T PF13525_consen 105 STRKAIEEFEELIKRYPNS---EYAEEAKKRLAELRNRLA 141 (203)
T ss_dssp HHHHHHHHHHHHHHH-TTS---TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCc---hHHHHHHHHHHHHHHHHH
Confidence 66666555433 446774 345555555555555554
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=34.29 E-value=2.3e+02 Score=28.82 Aligned_cols=36 Identities=11% Similarity=-0.093 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 9 EAERWLSVAEKV-LSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 9 EA~R~l~iAek~-L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
++..+.+.|..+ +..++|+.|...+.+....||.-.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~ 177 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST 177 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc
Confidence 356667788877 667999999999999999999964
No 181
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=33.92 E-value=31 Score=31.59 Aligned_cols=35 Identities=14% Similarity=0.364 Sum_probs=30.6
Q ss_pred CceeeeCcchhhhhcchhhhcC-ceeeccccCCcee
Q 011245 234 PRFWTACPYCYILYEYPKAYED-CTLKCQNCKRAFH 268 (490)
Q Consensus 234 ~TFWT~Cp~C~~~YEY~R~YlN-~~LrCqnC~k~F~ 268 (490)
.+|.=.|..|...|-+.|...+ ...+|..|+..|+
T Consensus 109 ~~~~y~C~~C~~~~~~~rr~~~~~~y~C~~C~g~l~ 144 (146)
T smart00731 109 KKYPYRCTGCGQRYLRVRRSNNVSRYRCGKCGGKLI 144 (146)
T ss_pred ceEEEECCCCCCCCceEccccCcceEEcCCCCCEEE
Confidence 4788899999999988888777 8899999999886
No 182
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=33.86 E-value=1.5e+02 Score=25.57 Aligned_cols=51 Identities=6% Similarity=-0.003 Sum_probs=37.0
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHH
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWS 123 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYe 123 (490)
.+--+++++++.+ +..||+.+-++.++++.=-..++...+++|....++..
T Consensus 3 RNIk~LfnfdPPA-T~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV~~ia 53 (88)
T COG5552 3 RNIKELFNFDPPA-TPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVAEIA 53 (88)
T ss_pred cchHHHhCCCCCC-CcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHH
Confidence 4556788999999 67999999888888886555555566677766554433
No 183
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=33.11 E-value=42 Score=38.51 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 6 NRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 6 NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
+|.-.+-|+.++-..=-.+|.+.|+++++||..++|.+.
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa 455 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA 455 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc
Confidence 345556677777666667899999999999999999754
No 184
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=33.10 E-value=30 Score=32.27 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=27.5
Q ss_pred eeCcchhh-hhcchhhhcCceeeccccCCceeeeeccCCCC
Q 011245 238 TACPYCYI-LYEYPKAYEDCTLKCQNCKRAFHGVMIASPPV 277 (490)
Q Consensus 238 T~Cp~C~~-~YEY~R~YlN~~LrCqnC~k~F~A~ev~~pp~ 277 (490)
+.||-|.+ +|++ +-.+-||+|...+.-++....-+
T Consensus 29 ~hCp~Cg~PLF~K-----dG~v~CPvC~~~~~~v~~e~~~~ 64 (131)
T COG1645 29 KHCPKCGTPLFRK-----DGEVFCPVCGYREVVVEEEEEEV 64 (131)
T ss_pred hhCcccCCcceee-----CCeEECCCCCceEEEeecccccc
Confidence 47999987 6673 56799999999998887766543
No 185
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=33.01 E-value=24 Score=26.43 Aligned_cols=26 Identities=19% Similarity=0.595 Sum_probs=18.4
Q ss_pred eCcchhhhhcchhhhcCceeeccccCC
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKR 265 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k 265 (490)
+||+|... ++++.=-....+|-.|++
T Consensus 20 ~CP~Cg~~-~~~~~~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 20 VCPHCGST-KHYRLKTRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCe-eeEEeCCCCeEECCCCCC
Confidence 69999986 443332257888999986
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=32.66 E-value=1.2e+02 Score=30.67 Aligned_cols=34 Identities=6% Similarity=-0.087 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
-...+|+.++..++++.|...+.++...||.-..
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 3456777788888888888888888888887543
No 187
>PF15469 Sec5: Exocyst complex component Sec5
Probab=32.52 E-value=96 Score=29.15 Aligned_cols=77 Identities=18% Similarity=0.165 Sum_probs=48.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCc----hHHHHHHHHHHHHhcccceeccCCCCCCChHhhhccccCCCCHHHHHHH
Q 011245 18 EKVLSSHDFQGARSFAIRAREYDPSFE----APNQVLAVADTIIAGESIIITSNGNQYHDWYAILQLARFTHSIELIATQ 93 (490)
Q Consensus 18 ek~L~~~D~~gAkrfa~KAq~L~P~le----~~~qlLav~dvllAae~rv~~~~~~~~~D~Y~ILgV~~~A~d~~eIKka 93 (490)
++++..+||+.|.+.|.||+.++-... ....+..-++..+..- ....|+.|.-.+ . +.+++.+.
T Consensus 94 ~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~----------r~~l~~~L~~~~-~-s~~~~~~~ 161 (182)
T PF15469_consen 94 RECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEF----------REKLWEKLLSPP-S-SQEEFLKL 161 (182)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHhCCC-C-CHHHHHHH
Confidence 457889999999999999999987753 2333333333333211 234466666554 3 56788887
Q ss_pred HHHHHHHhCCCCCC
Q 011245 94 YRKLALLLSPERNR 107 (490)
Q Consensus 94 YRkLAl~lHPDKn~ 107 (490)
-+.|. .|+++-+|
T Consensus 162 i~~Ll-~L~~~~dP 174 (182)
T PF15469_consen 162 IRKLL-ELNVEEDP 174 (182)
T ss_pred HHHHH-hCCCCCCH
Confidence 75554 45666543
No 188
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=32.29 E-value=4.4e+02 Score=24.86 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHH
Q 011245 13 WLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQV 49 (490)
Q Consensus 13 ~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~ql 49 (490)
-|+++...+..+++..|..-+.+-.+|+|..+.++-+
T Consensus 50 qL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 50 QLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4677888999999999999999999999998765544
No 189
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=32.25 E-value=1.1e+02 Score=27.64 Aligned_cols=88 Identities=8% Similarity=-0.156 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH-----------HhcccceeccCCCCCCChHhhhcc
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTI-----------IAGESIIITSNGNQYHDWYAILQL 80 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvl-----------lAae~rv~~~~~~~~~D~Y~ILgV 80 (490)
.+...+..++..|+++.|..++.++..+.|.....-..++.+-.. ..+...- ....+++--||+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-----p~~~~a~~~lg~ 100 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-----ASHPEPVYQTGV 100 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----CCCcHHHHHHHH
Confidence 356678899999999999999999999999865443333332111 0111111 334555665664
Q ss_pred ccC-CCCHHHHHHHHHHHHHHhCCCC
Q 011245 81 ARF-THSIELIATQYRKLALLLSPER 105 (490)
Q Consensus 81 ~~~-A~d~~eIKkaYRkLAl~lHPDK 105 (490)
--. .-..++-..+|++. +.+.|+.
T Consensus 101 ~l~~~g~~~eAi~~~~~A-l~~~p~~ 125 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTA-IKMSYAD 125 (144)
T ss_pred HHHHcCCHHHHHHHHHHH-HHhCCCC
Confidence 321 11345556666554 6677775
No 190
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=32.06 E-value=1e+02 Score=32.53 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTII 57 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvll 57 (490)
..|..+...++..|++..|.+.|.||.+|+|.-+....-|.++...+
T Consensus 150 kay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 150 KAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 34445556677778888888888888888888776655555555544
No 191
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.00 E-value=16 Score=29.98 Aligned_cols=12 Identities=42% Similarity=1.165 Sum_probs=10.5
Q ss_pred eeCcchhhhhcc
Q 011245 238 TACPYCYILYEY 249 (490)
Q Consensus 238 T~Cp~C~~~YEY 249 (490)
-+||||-++|.|
T Consensus 49 v~CPYC~t~y~l 60 (62)
T COG4391 49 VVCPYCSTRYRL 60 (62)
T ss_pred EecCccccEEEe
Confidence 389999999976
No 192
>PRK00420 hypothetical protein; Validated
Probab=31.88 E-value=26 Score=31.72 Aligned_cols=28 Identities=18% Similarity=0.472 Sum_probs=20.2
Q ss_pred eeCcchhhhhcchhhhcCceeeccccCCcee
Q 011245 238 TACPYCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 238 T~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
+.||.|.. ...+- -+....|++|++...
T Consensus 24 ~~CP~Cg~--pLf~l-k~g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 24 KHCPVCGL--PLFEL-KDGEVVCPVHGKVYI 51 (112)
T ss_pred CCCCCCCC--cceec-CCCceECCCCCCeee
Confidence 68999984 33332 367899999999555
No 193
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=31.44 E-value=26 Score=37.88 Aligned_cols=33 Identities=18% Similarity=0.463 Sum_probs=28.4
Q ss_pred eeeCcchhhhhcchhhhcCceeeccccCCceee
Q 011245 237 WTACPYCYILYEYPKAYEDCTLKCQNCKRAFHG 269 (490)
Q Consensus 237 WT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A 269 (490)
.++|+.|-..++..+-=-+...+|+.|+-.-+.
T Consensus 13 ~~~C~~Cd~l~~~~~l~~g~~a~CpRCg~~L~~ 45 (403)
T TIGR00155 13 HILCSQCDMLVALPRIESGQKAACPRCGTTLTV 45 (403)
T ss_pred eeeCCCCCCcccccCCCCCCeeECCCCCCCCcC
Confidence 568999999999998777889999999877653
No 194
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=31.13 E-value=23 Score=25.21 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=19.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 011245 1 MATGFNRAEAERWLSVAEKVLSSHDFQGARSFA 33 (490)
Q Consensus 1 M~m~~NkdEA~R~l~iAek~L~~~D~~gAkrfa 33 (490)
|+||..++++.++|..+ .+|.+.|..++
T Consensus 10 ~~mGf~~~~~~~AL~~~-----~~nve~A~~~L 37 (37)
T PF00627_consen 10 MEMGFSREQAREALRAC-----NGNVERAVDWL 37 (37)
T ss_dssp HHHTS-HHHHHHHHHHT-----TTSHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHc-----CCCHHHHHHhC
Confidence 45789899888888643 45888887764
No 195
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=30.85 E-value=25 Score=31.46 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=25.6
Q ss_pred CceeeeCcchhhhhcc---hhh-hcCceeeccccCCceeeeeccC
Q 011245 234 PRFWTACPYCYILYEY---PKA-YEDCTLKCQNCKRAFHGVMIAS 274 (490)
Q Consensus 234 ~TFWT~Cp~C~~~YEY---~R~-YlN~~LrCqnC~k~F~A~ev~~ 274 (490)
.|| .||+|...--- ... ----++.|-+|+.+|. ++++.
T Consensus 21 k~F--tCp~Cghe~vs~ctvkk~~~~g~~~Cg~CGls~e-~ev~~ 62 (104)
T COG4888 21 KTF--TCPRCGHEKVSSCTVKKTVNIGTAVCGNCGLSFE-CEVPE 62 (104)
T ss_pred ceE--ecCccCCeeeeEEEEEecCceeEEEcccCcceEE-Eeccc
Confidence 477 79999876543 222 2234788999999985 45544
No 196
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=30.70 E-value=33 Score=35.24 Aligned_cols=33 Identities=12% Similarity=0.438 Sum_probs=25.1
Q ss_pred CceeeeCcchhhhhcchhhhcCceeeccccCCc
Q 011245 234 PRFWTACPYCYILYEYPKAYEDCTLKCQNCKRA 266 (490)
Q Consensus 234 ~TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~ 266 (490)
.+.--+|.||...|-|..--.|.-.||+.|+|.
T Consensus 154 ~~~rv~CghC~~~Fl~~~~~~~tlARCPHCrKv 186 (256)
T PF09788_consen 154 GSCRVICGHCSNTFLFNTLTSNTLARCPHCRKV 186 (256)
T ss_pred CceeEECCCCCCcEeccCCCCCccccCCCCcee
Confidence 456679999999999884333566699999964
No 197
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=30.69 E-value=19 Score=30.86 Aligned_cols=29 Identities=28% Similarity=0.669 Sum_probs=15.8
Q ss_pred cchhhhhcchhhhcCceeeccccCCceeeee
Q 011245 241 PYCYILYEYPKAYEDCTLKCQNCKRAFHGVM 271 (490)
Q Consensus 241 p~C~~~YEY~R~YlN~~LrCqnC~k~F~A~e 271 (490)
|-|+..|||.|. .-+-.|+.|+-.|..+.
T Consensus 37 PvCr~CyEYErk--eg~q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 37 PVCRPCYEYERK--EGNQVCPQCKTRYKRHK 65 (80)
T ss_dssp ---HHHHHHHHH--TS-SB-TTT--B----T
T ss_pred ccchhHHHHHhh--cCcccccccCCCccccc
Confidence 568899999999 67778999999988543
No 198
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=30.67 E-value=1.4e+02 Score=23.30 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYD 40 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~ 40 (490)
-|.-+..+|..+...++++.|+.++++|..+.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 35 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIE 35 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999998763
No 199
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=30.62 E-value=81 Score=32.51 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=29.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 16 VAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 16 iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
.+..++..|+|..|...++||+++.|+.-...-.+.+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lga 142 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGA 142 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHH
Confidence 6677889999999999999999999996554444444
No 200
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=30.50 E-value=44 Score=26.50 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=27.6
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCceeeeecc
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFHGVMIA 273 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A~ev~ 273 (490)
-|.+|..+.-.-..|..-.|.|+.|+.-++.--+.
T Consensus 6 RC~~CnklLa~~g~~~~leIKCpRC~tiN~~~a~~ 40 (51)
T PF10122_consen 6 RCGHCNKLLAKAGEVIELEIKCPRCKTINHVRATS 40 (51)
T ss_pred eccchhHHHhhhcCccEEEEECCCCCccceEeccC
Confidence 58999888777667888899999999887754433
No 201
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=30.44 E-value=4.2e+02 Score=24.16 Aligned_cols=84 Identities=25% Similarity=0.132 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcccceeccCCCCCCChHhhhccccC--CC
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTIIAGESIIITSNGNQYHDWYAILQLARF--TH 85 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvllAae~rv~~~~~~~~~D~Y~ILgV~~~--A~ 85 (490)
..|++-+..|+..|..|+|.-|--++++|.++. |.++.-.+ ... . ...++..++|+.-.. .
T Consensus 11 ~rA~~~l~~A~~~le~G~y~~a~f~aqQAvel~--------lKalL~~~-~~~--~-----p~tH~l~~Ll~~l~~~~~- 73 (132)
T COG2250 11 RRAERDLKLAKRDLELGDYDLACFHAQQAVELA--------LKALLIRL-GGE--P-----PKTHSLRELLRELSRELE- 73 (132)
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH--------HHHHHHHh-cCC--C-----CCcCCHHHHHHHHHHhcc-
Confidence 567777777888888999999998888887642 21221111 111 2 456788888875432 2
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCC
Q 011245 86 SIELIATQYRKLALLLSPERNRF 108 (490)
Q Consensus 86 d~~eIKkaYRkLAl~lHPDKn~~ 108 (490)
-.++|.+..+.|-..+-+++.++
T Consensus 74 ~~e~~~~~~~~Le~~yi~srY~d 96 (132)
T COG2250 74 VPEEILECARELEKRYILSRYPD 96 (132)
T ss_pred CcHHHHHHHHHHHHHHhHhcCcc
Confidence 24678888888888887777653
No 202
>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.
Probab=30.34 E-value=28 Score=25.08 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=18.3
Q ss_pred ceeeccccCCceeeee-ccCC-CCCCCCcccccc
Q 011245 256 CTLKCQNCKRAFHGVM-IASP-PVTEKDTYFCCW 287 (490)
Q Consensus 256 ~~LrCqnC~k~F~A~e-v~~p-p~~g~~~~~~~w 287 (490)
..++|..|++.|.-.. + .+ ...|+...||++
T Consensus 5 ~~~~C~~C~~~~~~~~~~-~~~~~~g~~~~FCS~ 37 (43)
T PF06467_consen 5 KMKTCSYCKKYIPNKPTM-IEVQYDGKMKQFCSQ 37 (43)
T ss_dssp SCEE-TTT--EEECCC-----EE-TTTTSCCSSH
T ss_pred cCCcCcccCCcccCCCcc-ccccccCcccChhCH
Confidence 4678999999997655 3 12 137888889876
No 203
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=30.28 E-value=27 Score=26.38 Aligned_cols=27 Identities=22% Similarity=0.483 Sum_probs=20.4
Q ss_pred eCcchhhhhcchhhhc-CceeeccccCC
Q 011245 239 ACPYCYILYEYPKAYE-DCTLKCQNCKR 265 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~Yl-N~~LrCqnC~k 265 (490)
.|..|...||..+.+- ...+.|+.|+.
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (52)
T TIGR02605 7 RCTACGHRFEVLQKMSDDPLATCPECGG 34 (52)
T ss_pred EeCCCCCEeEEEEecCCCCCCCCCCCCC
Confidence 7889998888876543 24667999987
No 204
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=29.93 E-value=35 Score=25.51 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=18.7
Q ss_pred eCcchhhhhcchhhhcC-ceeeccccCCcee
Q 011245 239 ACPYCYILYEYPKAYED-CTLKCQNCKRAFH 268 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN-~~LrCqnC~k~F~ 268 (490)
-||.|..+... +...+ ..+.|+.|+-.|.
T Consensus 2 FCp~Cg~~l~~-~~~~~~~~~vC~~Cg~~~~ 31 (52)
T smart00661 2 FCPKCGNMLIP-KEGKEKRRFVCRKCGYEEP 31 (52)
T ss_pred CCCCCCCcccc-ccCCCCCEEECCcCCCeEE
Confidence 48888776533 33322 4788999996554
No 205
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=29.82 E-value=1.2e+02 Score=36.59 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
+...-++..|...+..+||.+|..++.+|.+..|...
T Consensus 162 ~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 162 DNILALLGKARIAYNKKDYRGALKYYKKALRINPACK 198 (1018)
T ss_pred cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC
Confidence 4566789999999999999999999999999999843
No 206
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=29.81 E-value=38 Score=34.82 Aligned_cols=32 Identities=25% Similarity=0.687 Sum_probs=16.3
Q ss_pred eCcchhhhhcc---hhhhcCceeeccccCCceeee
Q 011245 239 ACPYCYILYEY---PKAYEDCTLKCQNCKRAFHGV 270 (490)
Q Consensus 239 ~Cp~C~~~YEY---~R~YlN~~LrCqnC~k~F~A~ 270 (490)
-|..|++.|+= .+.|=--...|++|++.|.++
T Consensus 134 RCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~G~ 168 (278)
T PF15135_consen 134 RCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFRGF 168 (278)
T ss_pred cccccccccCCCccccccceeeeecccccccchhh
Confidence 35556655542 222323345566666666653
No 207
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=29.76 E-value=54 Score=22.87 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=21.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 011245 1 MATGFNRAEAERWLSVAEKVLSSHDFQGARSFA 33 (490)
Q Consensus 1 M~m~~NkdEA~R~l~iAek~L~~~D~~gAkrfa 33 (490)
|+||.++++|.+++..+ .+|.+.|..++
T Consensus 9 ~~mGf~~~~a~~aL~~~-----~~d~~~A~~~L 36 (37)
T smart00165 9 LEMGFSREEALKALRAA-----NGNVERAAEYL 36 (37)
T ss_pred HHcCCCHHHHHHHHHHh-----CCCHHHHHHHH
Confidence 46899999999988865 46888887664
No 208
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=29.74 E-value=26 Score=37.99 Aligned_cols=32 Identities=22% Similarity=0.558 Sum_probs=28.0
Q ss_pred eeCcchhhhhcchhhhcCceeeccccCCceee
Q 011245 238 TACPYCYILYEYPKAYEDCTLKCQNCKRAFHG 269 (490)
Q Consensus 238 T~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A 269 (490)
++|+.|-..++..+.=-+..-+|+.|+-.-..
T Consensus 11 ~~C~~Cd~l~~~~~l~~g~~a~CpRCg~~L~~ 42 (419)
T PRK15103 11 ILCPQCDMLVALPRLEHGQKAACPRCGTTLTV 42 (419)
T ss_pred ccCCCCCceeecCCCCCCCeeECCCCCCCCcC
Confidence 78999999999998777888999999987754
No 209
>PRK05978 hypothetical protein; Provisional
Probab=29.64 E-value=23 Score=33.48 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=26.9
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCceeee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFHGV 270 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A~ 270 (490)
-||.|..---| +.|+.-.-+|..|+..|...
T Consensus 35 rCP~CG~G~LF-~g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 35 RCPACGEGKLF-RAFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred cCCCCCCCccc-ccccccCCCccccCCccccC
Confidence 89999876666 48999999999999999864
No 210
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=29.37 E-value=1.4e+02 Score=27.22 Aligned_cols=36 Identities=11% Similarity=-0.017 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l 43 (490)
.+|.-....+..++..++++.|..++.++..+.|..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 68 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP 68 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence 466677778888888888888888888888777653
No 211
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=29.10 E-value=29 Score=31.99 Aligned_cols=34 Identities=18% Similarity=0.428 Sum_probs=18.8
Q ss_pred CceeeeCcchhhhhcc-------------hhhhcCceeeccccCCce
Q 011245 234 PRFWTACPYCYILYEY-------------PKAYEDCTLKCQNCKRAF 267 (490)
Q Consensus 234 ~TFWT~Cp~C~~~YEY-------------~R~YlN~~LrCqnC~k~F 267 (490)
..+.|-|+.|....+- ...+.+.--+|+.|+|-|
T Consensus 88 ~~~~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiy 134 (147)
T PF01927_consen 88 DPIFSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIY 134 (147)
T ss_pred CCCCCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEe
Confidence 3456677777654422 222234456677777765
No 212
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=29.00 E-value=59 Score=27.50 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=21.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhC
Q 011245 16 VAEKVLSSHDFQGARSFAIRAREYD 40 (490)
Q Consensus 16 iAek~L~~~D~~gAkrfa~KAq~L~ 40 (490)
.++.+...||+++|++..++|+.+.
T Consensus 43 kv~~~~~~Gd~~~A~~aS~~Ak~~~ 67 (82)
T PF04505_consen 43 KVRSRYAAGDYEGARRASRKAKKWS 67 (82)
T ss_pred hhHHHHHCCCHHHHHHHHHHhHHHH
Confidence 4567889999999999999998653
No 213
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=28.80 E-value=1.2e+02 Score=28.96 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 9 EAERWLSVAEKV-LSSHD--FQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 9 EA~R~l~iAek~-L~~~D--~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
.+.-+..+|..+ +..++ +..|+..+.++.+++|.....-.++++
T Consensus 106 ~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~ 152 (198)
T PRK10370 106 NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS 152 (198)
T ss_pred CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 344555566654 45555 467777777777777765443333333
No 214
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=28.76 E-value=51 Score=38.98 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=25.2
Q ss_pred CCCCCCcccccccceeeccccccCCC-CCCCCCCccccccc
Q 011245 318 PKPGQNNKKTNKRVQVLYDEVLISDS-ESDPEESDDEWGSN 357 (490)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 357 (490)
|.+-.+.+--.|+-..+-+|.+|||+ +|.-++|-+-|.+.
T Consensus 746 p~~~es~~ci~kg~~shl~~ad~s~~~e~~~~rDh~fw~ns 786 (1096)
T KOG1859|consen 746 PINEESSNCIGKGEASHLSDADISDSDEDNTIRDHEFWENS 786 (1096)
T ss_pred ccccccccccCccchhhhhhcccCCccccccccccchhccC
Confidence 33333433335777888899999998 44445556678544
No 215
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=28.48 E-value=26 Score=25.60 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=17.3
Q ss_pred CcchhhhhcchhhhcCceeeccccCCcee
Q 011245 240 CPYCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 240 Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
||.|....+=.+..--..-.|++|+.-|+
T Consensus 2 CP~C~~~l~~~~~~~~~id~C~~C~G~W~ 30 (41)
T PF13453_consen 2 CPRCGTELEPVRLGDVEIDVCPSCGGIWF 30 (41)
T ss_pred cCCCCcccceEEECCEEEEECCCCCeEEc
Confidence 88888754433332222345888887776
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=28.27 E-value=72 Score=24.95 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYD 40 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~ 40 (490)
-|.-+..+|..+...|+++.|..++++|..++
T Consensus 45 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 45 TANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 37777888888999999999999999988764
No 217
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=27.88 E-value=26 Score=23.38 Aligned_cols=13 Identities=31% Similarity=0.761 Sum_probs=10.6
Q ss_pred eeeccccCCceee
Q 011245 257 TLKCQNCKRAFHG 269 (490)
Q Consensus 257 ~LrCqnC~k~F~A 269 (490)
.+.|+.|+|.|..
T Consensus 2 l~~C~~CgR~F~~ 14 (25)
T PF13913_consen 2 LVPCPICGRKFNP 14 (25)
T ss_pred CCcCCCCCCEECH
Confidence 3579999999964
No 218
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=27.82 E-value=1.2e+02 Score=27.34 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHhCCCCCC-Cc----chHHHHHHHHHHHHHhCC
Q 011245 86 SIELIATQYRKLALLLSPERNR-FP----FADRSFKLVYDAWSILSN 127 (490)
Q Consensus 86 d~~eIKkaYRkLAl~lHPDKn~-~~----~AeeaFk~I~eAYevLSD 127 (490)
+..+++.+.|.+-+..|||... .| ..++.+++++.-.+.|..
T Consensus 7 ~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 7 SSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 4578999999999999999754 23 245678888877777764
No 219
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=27.49 E-value=55 Score=26.27 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l 43 (490)
+..-++.+|..++..+++..|..++.+ ..+.+..
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~ 57 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN 57 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC
Confidence 555677789999999999999999988 5555543
No 220
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=27.40 E-value=31 Score=26.25 Aligned_cols=30 Identities=23% Similarity=0.605 Sum_probs=16.3
Q ss_pred eeCcc--hhhhhcchhhhcCceeeccccCCce
Q 011245 238 TACPY--CYILYEYPKAYEDCTLKCQNCKRAF 267 (490)
Q Consensus 238 T~Cp~--C~~~YEY~R~YlN~~LrCqnC~k~F 267 (490)
..||. |...++....-....+.|+.|+..|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~f 50 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEF 50 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEE
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcC
Confidence 47888 9988888777544458888887766
No 221
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=27.21 E-value=1.9e+02 Score=20.80 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
-+..+|..++..++++.|...+.++..+.|...
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 355667777788899999999999888888765
No 222
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=27.03 E-value=2.2e+02 Score=25.74 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPS 42 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~ 42 (490)
.++.-+..++..++..++++.|...+.+|..+.|.
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 67 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID 67 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc
Confidence 46777888888888888888888888888887765
No 223
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=26.84 E-value=79 Score=20.61 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAI 34 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~ 34 (490)
-.+.+|..++..||++.|.+.++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 35678889999999999998875
No 224
>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing. It also plays an essential role in several cellular processes in DNA metabolism including replication, recombination and repair of DNA []. Replication factor-A protein is also known as Replication protein A 70 kDa DNA-binding subunit. This entry is found at the C terminus of Replication factor A.; PDB: 1L1O_F 3U50_C.
Probab=26.24 E-value=38 Score=30.78 Aligned_cols=31 Identities=23% Similarity=0.679 Sum_probs=21.7
Q ss_pred CceeeeCc--chhhhhcchhhhcCceeeccccCCce
Q 011245 234 PRFWTACP--YCYILYEYPKAYEDCTLKCQNCKRAF 267 (490)
Q Consensus 234 ~TFWT~Cp--~C~~~YEY~R~YlN~~LrCqnC~k~F 267 (490)
.-|+.+|| .|...-... .+....|.+|++.+
T Consensus 15 ~~~Y~aC~~~~C~kKv~~~---~~~~y~C~~C~~~~ 47 (146)
T PF08646_consen 15 NWYYPACPNEKCNKKVTEN---GDGSYRCEKCNKTV 47 (146)
T ss_dssp TTEEEE-TSTTTS-B-EEE---TTTEEEETTTTEEE
T ss_pred CcEECCCCCccCCCEeecC---CCcEEECCCCCCcC
Confidence 35889999 999875544 24578999999876
No 225
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=26.15 E-value=2e+02 Score=25.56 Aligned_cols=37 Identities=24% Similarity=0.135 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
.+.....+|..++..++++.|...+.++....|....
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 66 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYL 66 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence 4666777888888888888888888888888877543
No 226
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=26.10 E-value=30 Score=26.60 Aligned_cols=27 Identities=26% Similarity=0.711 Sum_probs=16.8
Q ss_pred eCcchhhhhcchhh-h----------cCceeeccccCCce
Q 011245 239 ACPYCYILYEYPKA-Y----------EDCTLKCQNCKRAF 267 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~-Y----------lN~~LrCqnC~k~F 267 (490)
.||||... +... + ....+.||-|...+
T Consensus 4 ~CP~C~~~--~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 4 TCPYCGKG--FSESSLVEHCEDEHRSESKNVVCPICSSRV 41 (54)
T ss_pred CCCCCCCc--cCHHHHHHHHHhHCcCCCCCccCCCchhhh
Confidence 68888872 2221 1 13468899998654
No 227
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=25.92 E-value=1.2e+02 Score=27.35 Aligned_cols=32 Identities=13% Similarity=0.300 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREY 39 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L 39 (490)
|.+++.+..|...+..+|+..+...+.||+.+
T Consensus 29 dg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~I 60 (124)
T TIGR00208 29 NGCLKFIRLAAQAIENDDIERKNENLIKAQNI 60 (124)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999998853
No 228
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=25.37 E-value=35 Score=35.72 Aligned_cols=26 Identities=23% Similarity=0.768 Sum_probs=22.4
Q ss_pred ceeeeCcchhhhhcchhhhcCceeeccccCCc
Q 011245 235 RFWTACPYCYILYEYPKAYEDCTLKCQNCKRA 266 (490)
Q Consensus 235 TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~ 266 (490)
-=|-.|..|.+.+.|.|. .|++|+..
T Consensus 208 ~RyL~CslC~teW~~~R~------~C~~Cg~~ 233 (305)
T TIGR01562 208 LRYLSCSLCATEWHYVRV------KCSHCEES 233 (305)
T ss_pred ceEEEcCCCCCcccccCc------cCCCCCCC
Confidence 457799999999999886 89999875
No 229
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=25.04 E-value=37 Score=26.37 Aligned_cols=26 Identities=23% Similarity=0.627 Sum_probs=15.3
Q ss_pred CcchhhhhcchhhhcC------ceeeccccCC
Q 011245 240 CPYCYILYEYPKAYED------CTLKCQNCKR 265 (490)
Q Consensus 240 Cp~C~~~YEY~R~YlN------~~LrCqnC~k 265 (490)
||+|-......+.... ..+.|.+|+-
T Consensus 6 CPFCG~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 6 CPFCGSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CCCCCCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 8888544444333222 6677888865
No 230
>PF11702 DUF3295: Protein of unknown function (DUF3295); InterPro: IPR021711 This family is conserved in fungi but the function is not known.
Probab=24.38 E-value=33 Score=38.30 Aligned_cols=22 Identities=18% Similarity=0.560 Sum_probs=13.5
Q ss_pred eeccc-cccCCCCC-------CCCCCcccc
Q 011245 333 VLYDE-VLISDSES-------DPEESDDEW 354 (490)
Q Consensus 333 ~~~~~-~~~~~~~~-------~~~~~~~~~ 354 (490)
.++|| +..+|++| |||+||+||
T Consensus 286 ~~~d~~~~~~~~~d~vdESAIdDDDDssDW 315 (507)
T PF11702_consen 286 SVDDDAAADDDEDDYVDESAIDDDDDSSDW 315 (507)
T ss_pred cccccccccccccccccchhccCCccchhh
Confidence 44554 44444444 577789999
No 231
>PRK12496 hypothetical protein; Provisional
Probab=24.15 E-value=38 Score=32.18 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=19.9
Q ss_pred eeee-CcchhhhhcchhhhcCceeeccccCCceee
Q 011245 236 FWTA-CPYCYILYEYPKAYEDCTLKCQNCKRAFHG 269 (490)
Q Consensus 236 FWT~-Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A 269 (490)
=|-. |+.|...|..... .-.|+.|+-.-..
T Consensus 125 ~w~~~C~gC~~~~~~~~~----~~~C~~CG~~~~r 155 (164)
T PRK12496 125 KWRKVCKGCKKKYPEDYP----DDVCEICGSPVKR 155 (164)
T ss_pred eeeEECCCCCccccCCCC----CCcCCCCCChhhh
Confidence 4776 9999988753221 1279999876543
No 232
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=24.00 E-value=1.2e+02 Score=26.96 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRARE 38 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~ 38 (490)
|.|.+.+..|...+..+|++.+...+.||+.
T Consensus 27 d~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~ 57 (122)
T PF02561_consen 27 DGAIEFLKQAKEAIEQGDIEEKNEALQKAQD 57 (122)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999875
No 233
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=23.97 E-value=1.5e+02 Score=22.23 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhh
Q 011245 90 IATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTD 137 (490)
Q Consensus 90 IKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~ 137 (490)
-.+.+|.-.+.-||+. ...+..+.|.+.|..|+|..+...++..
T Consensus 11 f~~~~~~~~~~~~~~~----~~~~i~~~~~~~W~~l~~~~k~~y~~~a 54 (66)
T cd00084 11 FSQEHRAEVKAENPGL----SVGEISKILGEMWKSLSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHHHHHCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4456677777788883 4677899999999999987776666544
No 234
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=23.80 E-value=22 Score=33.33 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=23.5
Q ss_pred eeCcchhhhhcchhhhcCce-----eeccccCCceeee
Q 011245 238 TACPYCYILYEYPKAYEDCT-----LKCQNCKRAFHGV 270 (490)
Q Consensus 238 T~Cp~C~~~YEY~R~YlN~~-----LrCqnC~k~F~A~ 270 (490)
..||+|...+-....--+-| .+|..|+.+|-.+
T Consensus 106 ~~cp~c~s~~t~~~s~fg~t~cka~~~c~~c~epf~~f 143 (146)
T TIGR02159 106 VQCPRCGSADTTITSIFGPTACKALYRCRACKEPFEYF 143 (146)
T ss_pred CcCCCCCCCCcEeecCCCChhhHHHhhhhhhCCcHhhc
Confidence 57888887766555544444 4699999999764
No 235
>PF10849 DUF2654: Protein of unknown function (DUF2654); InterPro: IPR022558 This entry is represented by Bacteriophage T4, a-gt.4; it is a family of uncharacterised viral proteins.
Probab=23.53 E-value=2.8e+02 Score=23.43 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 011245 6 NRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPS 42 (490)
Q Consensus 6 NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~ 42 (490)
|+.|-.|+..-||.+|-.+++++..--+.|.+.++--
T Consensus 12 N~rEI~RL~~HAe~al~~~Nk~~Y~YAI~KLR~i~kQ 48 (70)
T PF10849_consen 12 NRREIKRLKKHAEEALIENNKEGYVYAIKKLRDIYKQ 48 (70)
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHcC
Confidence 7899999999999999999999988888888877755
No 236
>PRK10996 thioredoxin 2; Provisional
Probab=23.52 E-value=41 Score=30.34 Aligned_cols=32 Identities=22% Similarity=0.545 Sum_probs=28.7
Q ss_pred eeCcchhhhhcchhhhcCceeeccccCCceee
Q 011245 238 TACPYCYILYEYPKAYEDCTLKCQNCKRAFHG 269 (490)
Q Consensus 238 T~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A 269 (490)
|+|+.|...|+-+-.-..-.-.|+.|..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (139)
T PRK10996 3 TVCTSCQAINRLPDERIEDAAKCGRCGHDLFD 34 (139)
T ss_pred EECCCCCCcCCCCCccccCCCcCCCCCCccCC
Confidence 89999999999998888888889999988874
No 237
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=23.47 E-value=39 Score=23.88 Aligned_cols=24 Identities=33% Similarity=0.811 Sum_probs=13.3
Q ss_pred eCcchhhhhcchhhhcCceeeccccCC
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKR 265 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k 265 (490)
.||.|..-|.| --+..+.|+.|..
T Consensus 4 ~Cp~C~se~~y---~D~~~~vCp~C~~ 27 (30)
T PF08274_consen 4 KCPLCGSEYTY---EDGELLVCPECGH 27 (30)
T ss_dssp --TTT-----E---E-SSSEEETTTTE
T ss_pred CCCCCCCccee---ccCCEEeCCcccc
Confidence 59999999999 4467889999974
No 238
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=23.46 E-value=35 Score=25.27 Aligned_cols=11 Identities=36% Similarity=0.972 Sum_probs=8.4
Q ss_pred eccccCCceee
Q 011245 259 KCQNCKRAFHG 269 (490)
Q Consensus 259 rCqnC~k~F~A 269 (490)
+|+.|+|.||-
T Consensus 4 ~CprC~kg~Hw 14 (36)
T PF14787_consen 4 LCPRCGKGFHW 14 (36)
T ss_dssp C-TTTSSSCS-
T ss_pred cCcccCCCcch
Confidence 69999999993
No 239
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=23.37 E-value=33 Score=33.31 Aligned_cols=34 Identities=24% Similarity=0.747 Sum_probs=27.3
Q ss_pred ceeeeCcchhhhhcchhhhcCceeeccccCCceeee
Q 011245 235 RFWTACPYCYILYEYPKAYEDCTLKCQNCKRAFHGV 270 (490)
Q Consensus 235 TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A~ 270 (490)
.|. +||-|.+.|.|...++.. -.|+-|+..-..+
T Consensus 112 ~~y-~C~~~~~r~sfdeA~~~~-F~Cp~Cg~~L~~~ 145 (176)
T COG1675 112 NYY-VCPNCHVKYSFDEAMELG-FTCPKCGEDLEEY 145 (176)
T ss_pred Cce-eCCCCCCcccHHHHHHhC-CCCCCCCchhhhc
Confidence 444 779999999999997765 8999999765543
No 240
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=23.09 E-value=36 Score=23.16 Aligned_cols=27 Identities=26% Similarity=0.625 Sum_probs=13.6
Q ss_pred eCcchhhhhcchhhhcCceeeccccCC
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKR 265 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k 265 (490)
.|+.|++..+=....--.+-.|+.|.+
T Consensus 3 ~C~rC~~~~~~~~~~~r~~~~C~rCq~ 29 (30)
T PF06827_consen 3 KCPRCWNYIEDIGINGRSTYLCPRCQK 29 (30)
T ss_dssp B-TTT--BBEEEEETTEEEEE-TTTCC
T ss_pred cCccCCCcceEeEecCCCCeECcCCcC
Confidence 466776665555555555666776654
No 241
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=22.88 E-value=1.4e+02 Score=29.32 Aligned_cols=39 Identities=28% Similarity=0.200 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
..+.-+...|...+..|+.+.|.+++.+|.+++|....+
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~ 182 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDA 182 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 345667788888999999999999999999999986543
No 242
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=22.35 E-value=31 Score=30.66 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=19.4
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCceee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFHG 269 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A 269 (490)
.|..|...|+....+ ..||.|+...+-
T Consensus 72 ~C~~Cg~~~~~~~~~----~~CP~Cgs~~~~ 98 (113)
T PF01155_consen 72 RCRDCGHEFEPDEFD----FSCPRCGSPDVE 98 (113)
T ss_dssp EETTTS-EEECHHCC----HH-SSSSSS-EE
T ss_pred ECCCCCCEEecCCCC----CCCcCCcCCCcE
Confidence 599999999887775 669999988653
No 243
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.34 E-value=35 Score=32.72 Aligned_cols=9 Identities=33% Similarity=1.254 Sum_probs=6.0
Q ss_pred ccccCCcee
Q 011245 260 CQNCKRAFH 268 (490)
Q Consensus 260 CqnC~k~F~ 268 (490)
|.||+++|-
T Consensus 71 C~~CGkpyP 79 (158)
T PF10083_consen 71 CHNCGKPYP 79 (158)
T ss_pred HHhCCCCCc
Confidence 777776664
No 244
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=22.31 E-value=1.6e+02 Score=23.54 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhc
Q 011245 92 TQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDL 138 (490)
Q Consensus 92 kaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~ 138 (490)
+.+|.....-||+. ...+..+.|.+.|..|++..+...+|...
T Consensus 14 ~~~r~~~~~~~p~~----~~~eisk~l~~~Wk~ls~~eK~~y~~~a~ 56 (72)
T cd01388 14 KRHRRKVLQEYPLK----ENRAISKILGDRWKALSNEEKQPYYEEAK 56 (72)
T ss_pred HHHHHHHHHHCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666678874 56678999999999999998877766544
No 245
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=22.29 E-value=39 Score=30.18 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=19.7
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCceee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFHG 269 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A 269 (490)
.|+.|...|..... ...||.|+-..+-
T Consensus 72 ~C~~Cg~~~~~~~~----~~~CP~Cgs~~~~ 98 (115)
T TIGR00100 72 ECEDCSEEVSPEID----LYRCPKCHGIMLQ 98 (115)
T ss_pred EcccCCCEEecCCc----CccCcCCcCCCcE
Confidence 59999977766543 4779999976543
No 246
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=22.29 E-value=35 Score=22.44 Aligned_cols=21 Identities=38% Similarity=0.743 Sum_probs=10.6
Q ss_pred CcchhhhhcchhhhcCceeeccccCCc
Q 011245 240 CPYCYILYEYPKAYEDCTLKCQNCKRA 266 (490)
Q Consensus 240 Cp~C~~~YEY~R~YlN~~LrCqnC~k~ 266 (490)
||+|....+ +...-|++|+..
T Consensus 2 Cp~CG~~~~------~~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIE------DDAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCC------CcCcchhhhCCc
Confidence 555554443 233336666654
No 247
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=22.15 E-value=37 Score=28.86 Aligned_cols=38 Identities=26% Similarity=0.593 Sum_probs=21.5
Q ss_pred CceeeeCcchh----hhhcchhhhcCceeeccccCCceeeeeccC
Q 011245 234 PRFWTACPYCY----ILYEYPKAYEDCTLKCQNCKRAFHGVMIAS 274 (490)
Q Consensus 234 ~TFWT~Cp~C~----~~YEY~R~YlN~~LrCqnC~k~F~A~ev~~ 274 (490)
.+| .||+|. ..-...+...--.|.|.+|+..|.. .|+.
T Consensus 21 ~~F--~CPfC~~~~sV~v~idkk~~~~~~~C~~Cg~~~~~-~i~~ 62 (81)
T PF05129_consen 21 KVF--DCPFCNHEKSVSVKIDKKEGIGILSCRVCGESFQT-KINP 62 (81)
T ss_dssp S------TTT--SS-EEEEEETTTTEEEEEESSS--EEEE-E--S
T ss_pred ceE--cCCcCCCCCeEEEEEEccCCEEEEEecCCCCeEEE-ccCc
Confidence 467 899999 4556666666778999999999964 3543
No 248
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=22.12 E-value=3.4e+02 Score=27.87 Aligned_cols=32 Identities=22% Similarity=0.117 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l 43 (490)
-+...|...|..|+|..|...+..|...+|..
T Consensus 203 ~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 203 LLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 34567788888888888888888888877764
No 249
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=21.83 E-value=2.1e+02 Score=22.63 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRARE 38 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~ 38 (490)
+.|..++..|...=..|++..|..++..|..
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4688899999999999999999999988764
No 250
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=21.69 E-value=1.8e+02 Score=22.17 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=29.7
Q ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhh
Q 011245 94 YRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTD 137 (490)
Q Consensus 94 YRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~ 137 (490)
.|.-...-||+. ...+..+.|.+.|..|++..+....+..
T Consensus 15 ~r~~~~~~~p~~----~~~~i~~~~~~~W~~ls~~eK~~y~~~a 54 (66)
T cd01390 15 QRPKLKKENPDA----SVTEVTKILGEKWKELSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444455567873 5678999999999999988777666554
No 251
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=21.56 E-value=3.5e+02 Score=30.77 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH--------hccccee-ccC-------------
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTII--------AGESIII-TSN------------- 67 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvll--------Aae~rv~-~~~------------- 67 (490)
|+..+......|..+||..|.+.|.+|....|.....=--.++|-..+ .++.-+. .++
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 555555577788888888888888888888888654222222221111 0000000 000
Q ss_pred -----CCCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHH---HHHHHHhCCchhhHh
Q 011245 68 -----GNQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLV---YDAWSILSNPARKIM 133 (490)
Q Consensus 68 -----~~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I---~eAYevLSDp~kRa~ 133 (490)
.....-|++-|.+++. ..++-..|++.....|-|..+ ++..+.+ -+--.+|+||..|..
T Consensus 438 ~mk~ydkAleay~eale~dp~---~~e~~~~~~rc~~a~~~~~~~----ee~~~r~~~dpev~~il~d~~m~~~ 504 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELDPS---NAEAIDGYRRCVEAQRGDETP----EETKRRAMADPEVQAILQDPAMRQI 504 (539)
T ss_pred HHHHHHHHHHHHHHHHhcCch---hHHHHHHHHHHHHHhhcCCCH----HHHHHhhccCHHHHHHHcCHHHHHH
Confidence 0112346777888763 467888888877766555433 2222221 123445788777733
No 252
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=21.37 E-value=42 Score=32.40 Aligned_cols=11 Identities=18% Similarity=0.908 Sum_probs=6.5
Q ss_pred eeeccccCCce
Q 011245 257 TLKCQNCKRAF 267 (490)
Q Consensus 257 ~LrCqnC~k~F 267 (490)
..+|++|+|-|
T Consensus 130 f~~C~~CgkiY 140 (165)
T COG1656 130 FYRCPKCGKIY 140 (165)
T ss_pred eeECCCCcccc
Confidence 44566666654
No 253
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=21.13 E-value=4.4e+02 Score=28.65 Aligned_cols=87 Identities=16% Similarity=0.047 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHHhcccceeccCCCCCCCh-HhhhccccCCCCH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSF-EAPNQVLAVADTIIAGESIIITSNGNQYHDW-YAILQLARFTHSI 87 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l-e~~~qlLav~dvllAae~rv~~~~~~~~~D~-Y~ILgV~~~A~d~ 87 (490)
...+.++|+..|.+|-|++|...++......-.. ....+|+.+...-...++-| |- -+++.+.+.. ..
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAI---------d~A~~L~k~~~q~-~~ 176 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAI---------DVAERLVKLGGQT-YR 176 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHH---------HHHHHHHHcCCcc-ch
Confidence 3445678888999999999999888876533332 34556665554321111100 00 0011122222 23
Q ss_pred HHHHHHHHHHHHHhCCCCC
Q 011245 88 ELIATQYRKLALLLSPERN 106 (490)
Q Consensus 88 ~eIKkaYRkLAl~lHPDKn 106 (490)
-+|-.-|-.||..+-++.+
T Consensus 177 ~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 177 VEIAQFYCELAQQALASSD 195 (389)
T ss_pred hHHHHHHHHHHHHHhhhhh
Confidence 5777778888877777654
No 254
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.05 E-value=1.8e+02 Score=32.98 Aligned_cols=46 Identities=26% Similarity=0.256 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADT 55 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dv 55 (490)
|.|.+++|.+.+..|||.=|-..+.++.-.+|.......|.+-+-.
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lE 497 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALE 497 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHH
Confidence 7899999999999999999999999999999998777666554433
No 255
>PRK12366 replication factor A; Reviewed
Probab=20.97 E-value=49 Score=37.79 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=21.9
Q ss_pred CceeeeCcchhhhhcchhhhcCceeeccccCCc
Q 011245 234 PRFWTACPYCYILYEYPKAYEDCTLKCQNCKRA 266 (490)
Q Consensus 234 ~TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~ 266 (490)
.-||.+||.|...-.. .+-.-+|+.|++.
T Consensus 529 ~~~y~aCp~CnkKv~~----~~g~~~C~~c~~~ 557 (637)
T PRK12366 529 KIILYLCPNCRKRVEE----VDGEYICEFCGEV 557 (637)
T ss_pred CEEEecccccCeEeEc----CCCcEECCCCCCC
Confidence 5688999999776542 2456789999986
No 256
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=20.92 E-value=35 Score=34.76 Aligned_cols=26 Identities=19% Similarity=0.570 Sum_probs=14.4
Q ss_pred eeeeCcchhhhhcchhhhcCceeeccccCCce
Q 011245 236 FWTACPYCYILYEYPKAYEDCTLKCQNCKRAF 267 (490)
Q Consensus 236 FWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F 267 (490)
=|-.|..|-+.+.|.|. .|++|+..-
T Consensus 196 R~L~Cs~C~t~W~~~R~------~Cp~Cg~~~ 221 (290)
T PF04216_consen 196 RYLHCSLCGTEWRFVRI------KCPYCGNTD 221 (290)
T ss_dssp EEEEETTT--EEE--TT------S-TTT---S
T ss_pred EEEEcCCCCCeeeecCC------CCcCCCCCC
Confidence 57789999999999886 588887653
No 257
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=20.84 E-value=50 Score=32.58 Aligned_cols=28 Identities=25% Similarity=0.661 Sum_probs=21.6
Q ss_pred ceee--eCcchhhhhcchhhhcCceeeccccCCceee
Q 011245 235 RFWT--ACPYCYILYEYPKAYEDCTLKCQNCKRAFHG 269 (490)
Q Consensus 235 TFWT--~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A 269 (490)
.++| .|+.|-. .-.....|++|+..++|
T Consensus 305 ~~~tS~~C~~cg~-------~~~r~~~C~~cg~~~~r 334 (364)
T COG0675 305 PYYTSKTCPCCGH-------LSGRLFKCPRCGFVHDR 334 (364)
T ss_pred CCCCcccccccCC-------ccceeEECCCCCCeehh
Confidence 3455 7888888 22577899999999887
No 258
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=20.83 E-value=36 Score=27.74 Aligned_cols=24 Identities=29% Similarity=0.739 Sum_probs=19.4
Q ss_pred CCCceeeeCcchhhhhcchhhhcCc
Q 011245 232 EGPRFWTACPYCYILYEYPKAYEDC 256 (490)
Q Consensus 232 ~~~TFWT~Cp~C~~~YEY~R~YlN~ 256 (490)
.+.+|. -||.|-++|.|...|.-+
T Consensus 13 DGE~~l-rCPRC~~~FR~~K~Y~RH 36 (65)
T COG4049 13 DGEEFL-RCPRCGMVFRRRKDYIRH 36 (65)
T ss_pred CCceee-eCCchhHHHHHhHHHHHH
Confidence 356775 899999999999998743
No 259
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=20.80 E-value=1.4e+02 Score=27.85 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYD 40 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~ 40 (490)
|.+.+.+..|..+|..+|+..+...+.||+.++
T Consensus 29 eg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii 61 (132)
T COG1516 29 EGALKFLKRAKEAIEQEDIEEKNESIDKAIDII 61 (132)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999988644
No 260
>PRK10220 hypothetical protein; Provisional
Probab=20.68 E-value=49 Score=30.07 Aligned_cols=30 Identities=23% Similarity=0.657 Sum_probs=25.5
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCceeeee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFHGVM 271 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A~e 271 (490)
.||.|..-|-|.-. ..+.|+-|..-+.+.+
T Consensus 5 ~CP~C~seytY~d~---~~~vCpeC~hEW~~~~ 34 (111)
T PRK10220 5 HCPKCNSEYTYEDN---GMYICPECAHEWNDAE 34 (111)
T ss_pred cCCCCCCcceEcCC---CeEECCcccCcCCccc
Confidence 69999999999865 4699999998887655
No 261
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=20.66 E-value=55 Score=24.82 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=20.0
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCcee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
+|..|...++-. ..-.++|++|+-.-+
T Consensus 4 ~C~~Cg~~~~~~---~~~~irC~~CG~rIl 30 (44)
T smart00659 4 ICGECGRENEIK---SKDVVRCRECGYRIL 30 (44)
T ss_pred ECCCCCCEeecC---CCCceECCCCCceEE
Confidence 688888877754 457899999986544
No 262
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.37 E-value=37 Score=25.16 Aligned_cols=27 Identities=19% Similarity=0.504 Sum_probs=16.9
Q ss_pred eCcchhhhhcchhhhcC-ceeeccccCC
Q 011245 239 ACPYCYILYEYPKAYED-CTLKCQNCKR 265 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN-~~LrCqnC~k 265 (490)
.|..|...||-...+-. ..+.|+.|+.
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 7 RCEECGHEFEVLQSISEDDPVPCPECGS 34 (42)
T ss_pred EeCCCCCEEEEEEEcCCCCCCcCCCCCC
Confidence 56666666666655444 5666777665
No 263
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=20.09 E-value=48 Score=30.06 Aligned_cols=30 Identities=27% Similarity=0.658 Sum_probs=24.8
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCceeeee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFHGVM 271 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A~e 271 (490)
.||.|..-|-|.-. ..+.|+-|...+-..+
T Consensus 4 ~CP~C~seytY~dg---~~~iCpeC~~EW~~~~ 33 (109)
T TIGR00686 4 PCPKCNSEYTYHDG---TQLICPSCLYEWNENE 33 (109)
T ss_pred cCCcCCCcceEecC---CeeECccccccccccc
Confidence 69999999999865 4599999998887554
No 264
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=20.07 E-value=50 Score=39.98 Aligned_cols=43 Identities=28% Similarity=0.647 Sum_probs=32.7
Q ss_pred CCceeeeCc-----chhhhhcchhhhcCceeeccccCCceeeeeccCCCCCC
Q 011245 233 GPRFWTACP-----YCYILYEYPKAYEDCTLKCQNCKRAFHGVMIASPPVTE 279 (490)
Q Consensus 233 ~~TFWT~Cp-----~C~~~YEY~R~YlN~~LrCqnC~k~F~A~ev~~pp~~g 279 (490)
++-| -+|. -|+-.|||.|. +-+-.|+.|+..|.... ..|++.|
T Consensus 31 Ge~F-VAC~eC~fpvCr~cyeye~~--~g~~~cp~c~t~y~~~~-~~~~~~~ 78 (1044)
T PLN02915 31 GQPF-VACHVCGFPVCKPCYEYERS--EGNQCCPQCNTRYKRHK-GCPRVEG 78 (1044)
T ss_pred CCEE-EEeccCCCccccchhhhhhh--cCCccCCccCCchhhhc-CCCCccC
Confidence 4556 5664 56889999999 66678999999999766 5666655
Done!