Query 011245
Match_columns 490
No_of_seqs 368 out of 2014
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 04:09:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l6l_A DNAJ homolog subfamily 99.9 4E-24 1.4E-28 194.3 8.2 131 69-270 7-146 (155)
2 2ctp_A DNAJ homolog subfamily 99.8 6.9E-19 2.4E-23 142.7 8.1 71 69-140 4-74 (78)
3 1hdj_A Human HSP40, HDJ-1; mol 99.8 9.9E-19 3.4E-23 141.4 8.3 69 72-141 3-71 (77)
4 2ctr_A DNAJ homolog subfamily 99.8 2E-18 6.7E-23 143.5 9.0 73 69-142 4-76 (88)
5 2dn9_A DNAJ homolog subfamily 99.8 1.9E-18 6.5E-23 140.2 8.7 71 69-140 4-75 (79)
6 2cug_A Mkiaa0962 protein; DNAJ 99.7 1.7E-18 5.8E-23 143.9 8.2 71 69-140 14-84 (88)
7 2ej7_A HCG3 gene; HCG3 protein 99.7 2.4E-18 8.1E-23 140.6 8.7 71 69-140 6-78 (82)
8 1wjz_A 1700030A21RIK protein; 99.7 1.4E-18 4.7E-23 145.2 6.6 71 69-140 13-90 (94)
9 2yua_A Williams-beuren syndrom 99.7 3.5E-18 1.2E-22 145.0 7.6 71 69-140 14-85 (99)
10 2dmx_A DNAJ homolog subfamily 99.7 7.6E-18 2.6E-22 140.7 8.9 72 69-141 6-79 (92)
11 2och_A Hypothetical protein DN 99.7 6.8E-18 2.3E-22 135.4 8.2 68 69-139 5-72 (73)
12 2ctq_A DNAJ homolog subfamily 99.7 5.8E-18 2E-22 146.8 7.7 72 69-141 17-89 (112)
13 2ctw_A DNAJ homolog subfamily 99.7 2.8E-17 9.7E-22 142.0 8.3 72 69-141 14-86 (109)
14 2o37_A Protein SIS1; HSP40, J- 99.7 2.9E-17 1E-21 137.6 7.9 71 69-142 5-75 (92)
15 2lgw_A DNAJ homolog subfamily 99.7 2.6E-17 8.9E-22 140.3 7.4 69 72-141 2-72 (99)
16 1bq0_A DNAJ, HSP40; chaperone, 99.7 8.8E-18 3E-22 143.3 3.8 70 71-141 2-72 (103)
17 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 4E-17 1.4E-21 140.4 6.4 71 69-139 12-86 (109)
18 2ys8_A RAB-related GTP-binding 99.7 4.1E-17 1.4E-21 136.5 5.8 63 70-133 25-87 (90)
19 3apq_A DNAJ homolog subfamily 99.6 1.7E-16 5.7E-21 147.2 7.2 69 72-141 2-71 (210)
20 3hho_A CO-chaperone protein HS 99.6 8.3E-16 2.9E-20 143.1 6.6 69 71-139 3-78 (174)
21 3ag7_A Putative uncharacterize 99.6 4.6E-16 1.6E-20 134.6 2.8 85 32-129 11-104 (106)
22 3lz8_A Putative chaperone DNAJ 99.6 2.2E-16 7.5E-21 160.2 0.0 69 70-139 26-94 (329)
23 1gh6_A Large T antigen; tumor 99.5 6.5E-16 2.2E-20 135.4 1.6 65 71-139 7-73 (114)
24 1fpo_A HSC20, chaperone protei 99.5 4.8E-15 1.6E-19 137.7 6.1 68 72-139 1-75 (171)
25 3bvo_A CO-chaperone protein HS 99.5 5.5E-15 1.9E-19 141.3 6.4 70 70-139 41-117 (207)
26 1n4c_A Auxilin; four helix bun 99.5 2.3E-15 7.9E-20 141.8 3.6 64 70-134 115-182 (182)
27 1iur_A KIAA0730 protein; DNAJ 99.5 2E-15 6.8E-20 126.7 2.8 62 69-131 13-76 (88)
28 1faf_A Large T antigen; J doma 99.5 4.1E-15 1.4E-19 121.9 4.1 60 72-135 11-72 (79)
29 2pf4_E Small T antigen; PP2A, 99.5 1.7E-15 5.7E-20 141.9 1.3 65 71-139 10-76 (174)
30 2qwo_B Putative tyrosine-prote 99.5 2.8E-15 9.5E-20 127.2 2.2 55 72-127 33-91 (92)
31 3uo3_A J-type CO-chaperone JAC 99.5 1.4E-14 4.9E-19 135.9 4.1 67 69-138 8-81 (181)
32 2y4t_A DNAJ homolog subfamily 99.5 1.7E-13 5.8E-18 133.8 10.2 116 11-136 330-449 (450)
33 2guz_A Mitochondrial import in 99.4 5.4E-14 1.8E-18 112.9 3.4 56 72-131 14-70 (71)
34 3apo_A DNAJ homolog subfamily 99.4 6.9E-14 2.4E-18 152.7 1.2 72 69-141 18-90 (780)
35 2guz_B Mitochondrial import in 98.3 7.1E-07 2.4E-11 71.1 5.2 51 73-127 5-58 (65)
36 2pzi_A Probable serine/threoni 96.9 0.00096 3.3E-08 72.0 6.7 108 9-124 533-675 (681)
37 3upv_A Heat shock protein STI1 91.0 0.53 1.8E-05 37.7 6.7 45 8-52 2-46 (126)
38 2l6j_A TPR repeat-containing p 90.9 1.3 4.6E-05 33.8 8.7 37 9-45 3-39 (111)
39 4gcn_A Protein STI-1; structur 90.7 1.5 5.2E-05 36.1 9.4 39 7-45 5-43 (127)
40 3iot_A Maltose-binding protein 90.7 0.089 3.1E-06 53.3 2.1 28 111-138 357-388 (449)
41 4gco_A Protein STI-1; structur 86.9 1.7 5.7E-05 36.0 7.0 48 5-52 8-55 (126)
42 2hf1_A Tetraacyldisaccharide-1 86.5 0.2 7E-06 40.0 1.1 28 239-268 10-37 (68)
43 2jr6_A UPF0434 protein NMA0874 86.4 0.21 7.1E-06 40.0 1.0 28 239-268 10-37 (68)
44 2js4_A UPF0434 protein BB2007; 85.4 0.24 8.3E-06 39.8 1.0 28 239-268 10-37 (70)
45 2pk7_A Uncharacterized protein 85.2 0.26 8.8E-06 39.5 1.1 28 239-268 10-37 (69)
46 3vtx_A MAMA; tetratricopeptide 84.4 4.7 0.00016 34.0 8.8 42 8-49 3-44 (184)
47 2jny_A Uncharacterized BCR; st 84.2 0.31 1.1E-05 38.9 1.1 28 239-268 12-39 (67)
48 2xcb_A PCRH, regulatory protei 81.0 5 0.00017 33.0 7.5 50 3-52 11-60 (142)
49 4ga2_A E3 SUMO-protein ligase 80.8 2 6.9E-05 36.3 5.1 48 6-53 27-74 (150)
50 3sz7_A HSC70 cochaperone (SGT) 80.7 3.2 0.00011 34.9 6.3 47 6-52 7-53 (164)
51 3rkv_A Putative peptidylprolyl 80.0 4.7 0.00016 33.7 7.1 38 9-46 62-99 (162)
52 2kat_A Uncharacterized protein 79.4 3 0.0001 32.8 5.4 38 9-46 18-55 (115)
53 3ma5_A Tetratricopeptide repea 79.3 3 0.0001 32.7 5.3 42 9-50 6-47 (100)
54 2kc7_A BFR218_protein; tetratr 79.0 6.8 0.00023 29.6 7.2 33 13-45 3-35 (99)
55 2vyi_A SGTA protein; chaperone 78.9 5.1 0.00017 30.6 6.4 42 4-45 6-47 (131)
56 3gyz_A Chaperone protein IPGC; 78.8 4.2 0.00014 35.3 6.6 49 4-52 30-78 (151)
57 1elw_A TPR1-domain of HOP; HOP 78.3 5.6 0.00019 29.9 6.5 38 8-45 2-39 (118)
58 3sz7_A HSC70 cochaperone (SGT) 77.8 5.3 0.00018 33.4 6.8 36 10-45 45-80 (164)
59 1na3_A Designed protein CTPR2; 76.7 7.3 0.00025 28.4 6.6 37 8-44 7-43 (91)
60 1na3_A Designed protein CTPR2; 75.1 9.8 0.00033 27.7 6.9 40 11-50 44-83 (91)
61 4gco_A Protein STI-1; structur 74.5 6.2 0.00021 32.5 6.2 44 9-52 46-89 (126)
62 2fbn_A 70 kDa peptidylprolyl i 74.3 37 0.0013 29.1 11.5 37 8-44 36-72 (198)
63 3q49_B STIP1 homology and U bo 73.9 7.1 0.00024 30.9 6.2 42 8-49 7-48 (137)
64 3rkv_A Putative peptidylprolyl 73.3 6.7 0.00023 32.8 6.2 49 10-58 97-146 (162)
65 2kpi_A Uncharacterized protein 72.0 1.2 4.1E-05 34.2 1.1 26 239-268 12-39 (56)
66 2xcb_A PCRH, regulatory protei 71.8 9 0.00031 31.5 6.6 39 10-48 52-90 (142)
67 2xev_A YBGF; tetratricopeptide 71.1 12 0.00042 29.1 7.0 33 12-44 4-36 (129)
68 3k9i_A BH0479 protein; putativ 70.9 13 0.00046 29.3 7.2 45 7-51 24-68 (117)
69 1a17_A Serine/threonine protei 70.7 9.9 0.00034 30.7 6.5 40 7-46 10-49 (166)
70 2vgx_A Chaperone SYCD; alterna 70.6 10 0.00034 32.0 6.7 49 4-52 15-63 (148)
71 1hxi_A PEX5, peroxisome target 70.0 7.5 0.00026 31.6 5.6 42 11-52 18-59 (121)
72 1elr_A TPR2A-domain of HOP; HO 70.0 33 0.0011 25.9 11.5 38 8-45 2-39 (131)
73 3uq3_A Heat shock protein STI1 69.4 54 0.0018 28.1 11.5 34 7-40 2-35 (258)
74 2vgx_A Chaperone SYCD; alterna 68.8 13 0.00046 31.2 7.1 38 10-47 55-92 (148)
75 2xev_A YBGF; tetratricopeptide 68.6 13 0.00045 29.0 6.6 34 11-44 40-73 (129)
76 2hr2_A Hypothetical protein; a 68.5 43 0.0015 30.3 10.8 37 7-43 8-44 (159)
77 2l6j_A TPR repeat-containing p 67.9 15 0.00053 27.6 6.7 34 10-43 38-71 (111)
78 1hxi_A PEX5, peroxisome target 67.6 11 0.00038 30.6 6.2 38 10-47 51-88 (121)
79 1kt0_A FKBP51, 51 kDa FK506-bi 67.6 5.8 0.0002 40.3 5.3 37 8-44 266-302 (457)
80 2lni_A Stress-induced-phosphop 66.5 10 0.00035 29.3 5.5 37 8-44 14-50 (133)
81 2dba_A Smooth muscle cell asso 66.3 24 0.00081 27.8 7.8 37 7-43 25-61 (148)
82 2kck_A TPR repeat; tetratricop 65.8 15 0.00052 27.2 6.2 36 11-46 7-42 (112)
83 2k5r_A Uncharacterized protein 65.3 2 6.8E-05 36.6 1.1 30 239-268 10-64 (97)
84 3bee_A Putative YFRE protein; 64.8 27 0.00092 28.0 7.9 45 9-53 5-52 (93)
85 3upv_A Heat shock protein STI1 64.5 15 0.0005 29.0 6.2 37 10-46 38-74 (126)
86 2vyi_A SGTA protein; chaperone 63.8 21 0.00072 27.0 6.8 37 10-46 46-82 (131)
87 1p5q_A FKBP52, FK506-binding p 63.7 27 0.00091 33.7 9.0 38 7-44 144-181 (336)
88 2if4_A ATFKBP42; FKBP-like, al 63.6 4.8 0.00016 39.1 3.7 35 12-46 232-266 (338)
89 1elw_A TPR1-domain of HOP; HOP 63.6 19 0.00064 26.8 6.4 37 10-46 38-74 (118)
90 1weo_A Cellulose synthase, cat 63.5 3 0.0001 35.3 1.9 37 241-280 44-80 (93)
91 4a1s_A PINS, partner of inscut 63.4 22 0.00075 33.6 8.2 38 7-44 45-82 (411)
92 2dba_A Smooth muscle cell asso 63.3 15 0.0005 29.0 6.0 38 9-46 64-101 (148)
93 3iot_A Maltose-binding protein 63.2 1.5 5.2E-05 44.3 0.0 11 9-19 187-197 (449)
94 4a1s_A PINS, partner of inscut 62.6 4.3 0.00015 38.6 3.1 32 12-43 265-296 (411)
95 2lni_A Stress-induced-phosphop 62.5 18 0.00062 27.8 6.3 43 9-51 49-91 (133)
96 1a17_A Serine/threonine protei 62.2 21 0.00072 28.7 6.9 41 10-50 47-87 (166)
97 2fbn_A 70 kDa peptidylprolyl i 61.9 17 0.00056 31.4 6.5 37 10-46 88-124 (198)
98 3flo_B DNA polymerase alpha ca 61.7 2.7 9.3E-05 40.1 1.5 36 233-268 18-60 (206)
99 2kc7_A BFR218_protein; tetratr 61.3 24 0.00084 26.4 6.7 35 12-46 37-71 (99)
100 3q49_B STIP1 homology and U bo 60.8 19 0.00065 28.3 6.2 36 10-45 43-78 (137)
101 3gyz_A Chaperone protein IPGC; 60.7 18 0.00061 31.3 6.5 41 10-50 70-110 (151)
102 2e2e_A Formate-dependent nitri 60.6 25 0.00084 29.4 7.2 40 10-49 78-120 (177)
103 1na0_A Designed protein CTPR3; 60.5 27 0.00094 26.1 6.9 36 10-45 43-78 (125)
104 3qky_A Outer membrane assembly 60.4 14 0.00048 33.1 6.0 35 11-45 149-183 (261)
105 2v5f_A Prolyl 4-hydroxylase su 60.0 19 0.00066 28.7 6.2 33 9-41 4-36 (104)
106 1elr_A TPR2A-domain of HOP; HO 59.8 22 0.00076 27.0 6.3 34 10-43 79-112 (131)
107 1na0_A Designed protein CTPR3; 59.5 24 0.00082 26.4 6.4 36 9-44 8-43 (125)
108 2v5f_A Prolyl 4-hydroxylase su 58.8 28 0.00095 27.7 6.9 45 14-58 50-94 (104)
109 3ro2_A PINS homolog, G-protein 58.7 26 0.00088 31.1 7.3 36 9-44 4-39 (338)
110 2yhc_A BAMD, UPF0169 lipoprote 58.2 16 0.00056 32.4 6.0 35 10-44 4-38 (225)
111 2gw1_A Mitochondrial precursor 57.9 1.2E+02 0.0042 29.1 12.6 36 7-42 3-38 (514)
112 1pc2_A Mitochondria fission pr 57.8 27 0.00091 31.6 7.2 49 10-58 71-119 (152)
113 2r5s_A Uncharacterized protein 57.3 3.5 0.00012 35.2 1.3 47 6-52 2-48 (176)
114 3qou_A Protein YBBN; thioredox 57.0 18 0.00062 33.8 6.3 44 9-52 116-159 (287)
115 3ro3_A PINS homolog, G-protein 56.9 22 0.00074 27.8 5.9 35 8-42 7-41 (164)
116 2kck_A TPR repeat; tetratricop 56.3 14 0.00047 27.5 4.4 32 11-42 41-72 (112)
117 1pft_A TFIIB, PFTFIIBN; N-term 56.1 5.2 0.00018 29.2 1.9 29 239-269 7-36 (50)
118 4gyw_A UDP-N-acetylglucosamine 55.9 44 0.0015 36.7 10.0 38 8-45 7-44 (723)
119 4gcn_A Protein STI-1; structur 55.3 18 0.00061 29.5 5.3 36 12-47 85-120 (127)
120 3ieg_A DNAJ homolog subfamily 54.9 28 0.00096 31.5 7.1 37 9-45 2-38 (359)
121 3qky_A Outer membrane assembly 54.7 21 0.00071 32.0 6.1 37 8-44 13-49 (261)
122 1ihg_A Cyclophilin 40; ppiase 54.4 27 0.00093 34.5 7.4 38 8-45 271-308 (370)
123 1hh8_A P67PHOX, NCF-2, neutrop 54.2 26 0.0009 29.8 6.4 43 10-52 37-79 (213)
124 3sf4_A G-protein-signaling mod 54.1 36 0.0012 31.5 7.8 36 9-44 8-43 (406)
125 3ieg_A DNAJ homolog subfamily 52.7 27 0.00093 31.6 6.6 33 13-45 275-307 (359)
126 2ooa_A E3 ubiquitin-protein li 52.2 6.6 0.00023 30.0 1.9 30 1-35 19-48 (52)
127 1nzn_A CGI-135 protein, fissio 51.5 35 0.0012 30.0 6.8 46 12-57 76-121 (126)
128 3urz_A Uncharacterized protein 51.5 34 0.0012 30.0 6.9 31 16-46 60-90 (208)
129 4ga2_A E3 SUMO-protein ligase 50.3 21 0.00072 29.9 5.1 37 9-45 64-100 (150)
130 2kat_A Uncharacterized protein 50.2 14 0.00049 28.7 3.8 35 10-44 53-87 (115)
131 1vg5_A RSGI RUH-014, rhomboid 49.6 10 0.00036 30.5 2.8 30 1-35 37-66 (73)
132 2g3q_A Protein YBL047C; endocy 49.5 18 0.00062 25.4 3.8 29 1-34 12-40 (43)
133 2ifu_A Gamma-SNAP; membrane fu 49.3 81 0.0028 29.4 9.5 34 86-121 111-144 (307)
134 1ihg_A Cyclophilin 40; ppiase 49.0 32 0.0011 34.0 6.9 46 9-54 306-351 (370)
135 1p5q_A FKBP52, FK506-binding p 49.0 32 0.0011 33.0 6.8 40 10-49 196-235 (336)
136 3o48_A Mitochondria fission 1 48.1 37 0.0013 30.3 6.5 47 12-58 80-126 (134)
137 3vtx_A MAMA; tetratricopeptide 47.8 37 0.0013 28.3 6.2 33 13-45 76-108 (184)
138 3u4t_A TPR repeat-containing p 47.7 28 0.00097 30.6 5.7 43 11-53 222-264 (272)
139 2r5s_A Uncharacterized protein 47.6 49 0.0017 27.9 7.1 33 11-43 109-141 (176)
140 2c2l_A CHIP, carboxy terminus 46.9 32 0.0011 32.1 6.2 38 9-46 3-40 (281)
141 3ma5_A Tetratricopeptide repea 46.9 16 0.00056 28.3 3.6 34 12-45 43-76 (100)
142 2vq2_A PILW, putative fimbrial 46.6 38 0.0013 28.4 6.1 40 6-45 4-43 (225)
143 2fo7_A Synthetic consensus TPR 46.0 32 0.0011 25.8 5.1 33 12-44 3-35 (136)
144 3bee_A Putative YFRE protein; 45.9 34 0.0012 27.4 5.4 39 11-49 44-82 (93)
145 1kt0_A FKBP51, 51 kDa FK506-bi 45.8 34 0.0012 34.6 6.6 37 10-46 317-353 (457)
146 3mkr_A Coatomer subunit epsilo 45.5 85 0.0029 29.4 9.0 14 92-105 255-268 (291)
147 2yhc_A BAMD, UPF0169 lipoprote 44.8 1.6E+02 0.0055 25.8 11.7 36 11-46 42-77 (225)
148 3k9i_A BH0479 protein; putativ 44.6 34 0.0012 26.9 5.2 40 12-51 63-102 (117)
149 1y8m_A FIS1; mitochondria, unk 44.5 48 0.0017 29.9 6.7 46 13-58 80-125 (144)
150 2ifu_A Gamma-SNAP; membrane fu 44.3 89 0.003 29.1 8.9 38 6-43 6-49 (307)
151 3urz_A Uncharacterized protein 44.0 37 0.0013 29.7 5.9 42 10-51 88-129 (208)
152 2juj_A E3 ubiquitin-protein li 43.9 10 0.00035 29.4 1.8 30 1-35 15-44 (56)
153 2e2e_A Formate-dependent nitri 43.7 36 0.0012 28.4 5.5 36 10-45 44-79 (177)
154 2pl2_A Hypothetical conserved 43.3 43 0.0015 29.6 6.2 30 15-44 44-73 (217)
155 2oo9_A E3 ubiquitin-protein li 42.4 11 0.00036 28.2 1.6 29 1-34 12-40 (46)
156 4gyw_A UDP-N-acetylglucosamine 42.0 91 0.0031 34.2 9.7 37 11-47 44-80 (723)
157 3uq3_A Heat shock protein STI1 41.6 63 0.0021 27.7 6.9 40 6-45 135-174 (258)
158 3as5_A MAMA; tetratricopeptide 41.6 22 0.00075 28.7 3.7 35 9-43 7-41 (186)
159 1fch_A Peroxisomal targeting s 41.5 85 0.0029 28.8 8.2 118 10-131 217-349 (368)
160 3u4t_A TPR repeat-containing p 41.1 43 0.0015 29.4 5.9 42 11-52 4-45 (272)
161 2pl2_A Hypothetical conserved 41.1 43 0.0015 29.6 5.8 31 10-40 118-148 (217)
162 2d9s_A CBL E3 ubiquitin protei 40.8 9.4 0.00032 29.3 1.2 29 1-34 17-45 (53)
163 3fp2_A TPR repeat-containing p 40.3 15 0.00052 36.0 2.9 42 8-49 23-64 (537)
164 1z96_A DNA-damage, UBA-domain 40.1 19 0.00065 24.5 2.6 28 1-33 12-39 (40)
165 4i17_A Hypothetical protein; T 39.9 53 0.0018 28.4 6.2 32 10-41 7-38 (228)
166 2knz_A Ubiquilin-4; cytoplasm, 39.3 26 0.00089 26.1 3.4 30 1-35 19-49 (53)
167 1xnf_A Lipoprotein NLPI; TPR, 39.1 64 0.0022 28.1 6.6 39 8-46 41-79 (275)
168 3gw4_A Uncharacterized protein 39.0 89 0.003 25.9 7.3 33 8-40 64-96 (203)
169 2fo7_A Synthetic consensus TPR 38.8 66 0.0023 24.0 5.9 34 11-44 36-69 (136)
170 1wji_A Tudor domain containing 38.8 25 0.00085 27.3 3.3 31 1-36 17-47 (63)
171 2ho1_A Type 4 fimbrial biogene 37.8 43 0.0015 29.1 5.3 36 10-45 37-72 (252)
172 3cv0_A Peroxisome targeting si 37.7 2E+02 0.0067 25.5 9.8 34 12-45 174-207 (327)
173 4eqf_A PEX5-related protein; a 37.4 2.5E+02 0.0085 25.8 10.9 36 10-45 65-100 (365)
174 2ff4_A Probable regulatory pro 37.1 75 0.0026 31.9 7.6 75 14-99 175-256 (388)
175 2v6x_A Vacuolar protein sortin 36.7 44 0.0015 26.7 4.7 39 1-39 4-42 (85)
176 1ify_A HHR23A, UV excision rep 36.5 12 0.0004 27.5 1.1 30 1-35 16-45 (49)
177 1xnf_A Lipoprotein NLPI; TPR, 36.3 74 0.0025 27.7 6.6 34 12-45 79-112 (275)
178 2y4t_A DNAJ homolog subfamily 34.6 70 0.0024 30.4 6.6 37 8-44 24-60 (450)
179 3sf4_A G-protein-signaling mod 34.1 56 0.0019 30.3 5.6 33 11-43 228-260 (406)
180 1vd4_A Transcription initiatio 34.0 15 0.00052 26.7 1.4 32 239-270 16-52 (62)
181 4i17_A Hypothetical protein; T 34.0 1E+02 0.0035 26.6 7.1 27 16-42 48-74 (228)
182 3as5_A MAMA; tetratricopeptide 33.7 89 0.003 25.0 6.2 37 10-46 76-112 (186)
183 1hh8_A P67PHOX, NCF-2, neutrop 33.5 2.1E+02 0.0073 23.9 12.5 30 8-37 4-33 (213)
184 3ax2_A Mitochondrial import re 33.3 77 0.0026 25.5 5.5 34 12-45 19-52 (73)
185 4abn_A Tetratricopeptide repea 33.3 1.2E+02 0.004 30.6 8.3 32 11-42 138-169 (474)
186 3iqc_A FLIS, flagellar protein 32.2 56 0.0019 28.7 4.9 32 8-39 34-65 (131)
187 3qou_A Protein YBBN; thioredox 32.0 96 0.0033 28.8 6.9 33 11-43 220-252 (287)
188 3cv0_A Peroxisome targeting si 31.8 69 0.0024 28.6 5.7 35 10-44 21-55 (327)
189 2q7f_A YRRB protein; TPR, prot 31.8 88 0.003 26.6 6.2 33 11-43 58-90 (243)
190 1wao_1 Serine/threonine protei 31.4 84 0.0029 32.0 6.9 43 11-53 75-117 (477)
191 3hym_B Cell division cycle pro 31.2 42 0.0014 30.1 4.1 43 10-52 236-278 (330)
192 2cpt_A SKD1 protein, vacuolar 31.2 37 0.0013 29.3 3.5 32 7-38 15-46 (117)
193 3pwf_A Rubrerythrin; non heme 31.0 17 0.00058 33.3 1.5 26 234-265 136-161 (170)
194 1orj_A Flagellar protein FLIS; 30.9 1E+02 0.0034 27.1 6.4 31 8-38 27-61 (130)
195 2pzi_A Probable serine/threoni 30.7 1.4E+02 0.0049 31.7 8.8 36 10-45 433-468 (681)
196 1qqe_A Vesicular transport pro 30.5 1.3E+02 0.0046 27.6 7.6 36 9-44 76-111 (292)
197 3ro3_A PINS homolog, G-protein 30.4 63 0.0021 25.1 4.6 41 9-49 48-88 (164)
198 2hr2_A Hypothetical protein; a 30.2 30 0.001 31.3 3.0 40 6-45 94-137 (159)
199 3hym_B Cell division cycle pro 30.0 81 0.0028 28.2 5.8 35 11-45 23-57 (330)
200 2f9y_B Acetyl-coenzyme A carbo 29.8 13 0.00044 37.1 0.4 35 233-268 20-54 (304)
201 2vq2_A PILW, putative fimbrial 29.5 1.4E+02 0.0048 24.7 7.0 29 10-38 76-105 (225)
202 1qqe_A Vesicular transport pro 29.5 1.2E+02 0.0042 27.9 7.2 34 11-44 159-192 (292)
203 3o10_A Sacsin; all-helical dom 29.3 44 0.0015 29.3 3.8 34 5-38 4-44 (141)
204 2ho1_A Type 4 fimbrial biogene 29.0 98 0.0034 26.7 6.1 29 10-38 105-133 (252)
205 3uk3_C Zinc finger protein 217 29.0 23 0.00079 24.4 1.6 31 239-269 6-44 (57)
206 2q7f_A YRRB protein; TPR, prot 29.0 1.1E+02 0.0036 26.1 6.2 32 13-44 94-125 (243)
207 1vh6_A Flagellar protein FLIS; 29.0 66 0.0023 28.7 4.9 32 8-39 31-62 (145)
208 2gw1_A Mitochondrial precursor 28.9 2.6E+02 0.0089 26.7 9.6 47 8-57 235-281 (514)
209 3feu_A Putative lipoprotein; a 28.8 12 0.00043 33.5 0.2 24 233-256 27-50 (185)
210 1x6e_A Zinc finger protein 24; 28.8 21 0.00072 26.2 1.4 31 239-269 16-54 (72)
211 3ulq_A Response regulator aspa 28.6 1.4E+02 0.0047 28.2 7.5 38 8-45 141-178 (383)
212 2c2l_A CHIP, carboxy terminus 28.6 85 0.0029 29.1 5.9 38 10-47 38-75 (281)
213 2vsy_A XCC0866; transferase, g 28.5 4E+02 0.014 26.9 11.4 122 9-138 22-155 (568)
214 3ro2_A PINS homolog, G-protein 28.5 32 0.0011 30.5 2.8 33 9-41 182-214 (338)
215 3n71_A Histone lysine methyltr 28.5 3.3E+02 0.011 28.3 11.0 34 9-42 308-341 (490)
216 4abn_A Tetratricopeptide repea 28.1 1E+02 0.0036 31.0 6.9 37 9-45 257-293 (474)
217 1fch_A Peroxisomal targeting s 28.0 82 0.0028 28.9 5.6 32 13-44 67-98 (368)
218 1zu2_A Mitochondrial import re 28.0 62 0.0021 29.2 4.6 31 24-54 105-135 (158)
219 1bbo_A Human enhancer-binding 27.9 25 0.00085 24.2 1.6 30 239-268 3-40 (57)
220 2dak_A Ubiquitin carboxyl-term 27.8 22 0.00074 27.3 1.4 30 1-35 17-46 (63)
221 2cfu_A SDSA1; SDS-hydrolase, l 27.5 48 0.0017 36.1 4.5 49 10-58 449-497 (658)
222 2vsy_A XCC0866; transferase, g 26.6 4.9E+02 0.017 26.2 11.7 42 9-50 56-97 (568)
223 2if4_A ATFKBP42; FKBP-like, al 26.5 67 0.0023 30.9 4.9 12 8-19 196-207 (338)
224 1w3b_A UDP-N-acetylglucosamine 26.2 51 0.0017 31.0 3.9 31 15-45 4-34 (388)
225 2adr_A ADR1; transcription reg 25.9 26 0.0009 24.5 1.4 30 239-268 4-41 (60)
226 1whc_A RSGI RUH-027, UBA/UBX 3 25.6 71 0.0024 24.6 4.0 31 1-35 17-47 (64)
227 1x5w_A Zinc finger protein 64, 25.4 26 0.00089 25.5 1.4 31 239-269 11-49 (70)
228 2lce_A B-cell lymphoma 6 prote 25.3 26 0.00088 25.8 1.3 31 239-269 19-57 (74)
229 2lv2_A Insulinoma-associated p 25.1 25 0.00085 28.2 1.3 31 239-269 30-68 (85)
230 2ct7_A Ring finger protein 31; 24.8 23 0.0008 28.6 1.1 28 240-269 28-55 (86)
231 1veg_A NEDD8 ultimate buster-1 24.5 30 0.001 28.6 1.7 33 1-38 37-69 (83)
232 2jy5_A Ubiquilin-1; UBA, alter 24.3 40 0.0014 25.0 2.2 29 1-34 20-49 (52)
233 4a3n_A Transcription factor SO 24.3 95 0.0032 23.2 4.5 44 90-137 13-56 (71)
234 4g1t_A Interferon-induced prot 23.7 4.3E+02 0.015 25.2 10.1 32 21-52 149-180 (472)
235 1om2_A Protein (mitochondrial 23.5 69 0.0024 27.0 3.8 33 12-44 22-54 (95)
236 3fp2_A TPR repeat-containing p 23.4 1.4E+02 0.0049 28.9 6.7 43 12-54 464-506 (537)
237 2eps_A POZ-, at HOOK-, and zin 23.4 14 0.00047 25.9 -0.5 30 239-268 14-52 (54)
238 2v6y_A AAA family ATPase, P60 23.4 46 0.0016 26.8 2.6 32 7-38 8-39 (83)
239 4eqf_A PEX5-related protein; a 23.3 1.7E+02 0.0057 27.0 6.9 38 9-46 212-249 (365)
240 4b4t_Q 26S proteasome regulato 23.2 1.8E+02 0.0063 27.5 7.2 114 10-129 135-253 (434)
241 1twf_L ABC10-alpha, DNA-direct 22.9 21 0.00071 28.5 0.4 29 235-266 26-54 (70)
242 4fx5_A VON willebrand factor t 22.6 72 0.0024 33.2 4.5 34 7-40 379-412 (464)
243 2ct0_A Non-SMC element 1 homol 22.5 36 0.0012 27.1 1.8 30 239-268 30-63 (74)
244 2znm_A Thiol:disulfide interch 22.0 18 0.00062 31.8 -0.2 21 235-255 29-49 (195)
245 1t3b_A Thiol:disulfide interch 21.6 21 0.0007 32.7 0.1 20 236-255 94-113 (211)
246 2f9i_B Acetyl-coenzyme A carbo 21.5 24 0.00082 34.9 0.6 34 233-267 26-59 (285)
247 1yuz_A Nigerythrin; rubrythrin 21.4 28 0.00096 32.6 1.1 26 235-266 170-195 (202)
248 1wao_1 Serine/threonine protei 21.4 1.6E+02 0.0055 29.9 6.8 34 10-43 6-39 (477)
249 2ep4_A Ring finger protein 24; 21.1 24 0.00081 26.7 0.4 18 252-269 47-64 (74)
250 3q15_A PSP28, response regulat 21.0 2.3E+02 0.0078 26.8 7.4 38 8-45 139-176 (378)
251 4b4t_Q 26S proteasome regulato 21.0 4E+02 0.014 25.0 9.2 32 12-43 6-37 (434)
252 3hz8_A Thiol:disulfide interch 20.8 19 0.00066 32.3 -0.2 22 235-256 31-52 (193)
253 4gzn_C ZFP-57, zinc finger pro 20.7 37 0.0013 25.3 1.4 31 239-269 6-44 (60)
254 2d9h_A Zinc finger protein 692 20.7 36 0.0012 25.2 1.3 31 239-269 9-50 (78)
255 1un2_A DSBA, thiol-disulfide i 20.6 20 0.00069 32.8 -0.1 18 233-250 118-135 (197)
256 3q15_A PSP28, response regulat 20.6 5.3E+02 0.018 24.2 10.6 29 10-38 222-250 (378)
257 1lko_A Rubrerythrin all-iron(I 20.5 31 0.0011 31.8 1.1 27 235-266 154-180 (191)
258 4dvc_A Thiol:disulfide interch 20.4 18 0.00063 31.0 -0.4 21 234-254 27-47 (184)
259 2ekk_A UBA domain from E3 ubiq 20.3 45 0.0015 23.9 1.7 28 1-34 17-44 (47)
260 2crj_A SWI/SNF-related matrix- 20.1 1.5E+02 0.0051 23.7 5.1 42 91-136 19-60 (92)
No 1
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.90 E-value=4e-24 Score=194.34 Aligned_cols=131 Identities=23% Similarity=0.375 Sum_probs=100.9
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHHHHHHhCCchhhHhhhhhcccc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPF-------ADRSFKLVYDAWSILSNPARKIMYDTDLQLS 141 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~-------AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~ 141 (490)
....|||+||||++.+ +.++||++||+|++++||||+.... |.+.|++|++||++|+||.+|+.||..+...
T Consensus 7 ~~~~~~y~iLgv~~~a-~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~ 85 (155)
T 2l6l_A 7 MPKKDWYSILGADPSA-NISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCED 85 (155)
T ss_dssp CCCSHHHHHHTCCTTC-CHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHH
T ss_pred CCCCChhHhcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchh
Confidence 3467999999999999 8999999999999999999998643 6789999999999999999999999888643
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCccccccccCCCCcccccccccccCC
Q 011245 142 QLGERPRQTQMPPPPQPPQPIQSQPVRRSPPPPARRSPPPQAKISPLNKDKGVSNRTVEEERSSSNNVTESTREARTSRT 221 (490)
Q Consensus 142 ~~~~~~~~~qp~~p~~~~qp~q~~~~~~~pp~p~~~p~~p~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (490)
.... .. +..+. +. . .
T Consensus 86 ~~~~--~~-----------------------------~~~~~------~~------~----------~------------ 100 (155)
T 2l6l_A 86 DLRN--VG-----------------------------PVDAQ------VY------L----------E------------ 100 (155)
T ss_dssp HHHT--TC-----------------------------SSSEE------EE------T----------T------------
T ss_pred hccc--cc-----------------------------cccce------ee------H----------H------------
Confidence 2110 00 00000 00 0 0
Q ss_pred CCCCCCCCCCCCCceeeeCcchhhhhcchhhhcC--ceeeccccCCceeee
Q 011245 222 ESNRPSEAAYEGPRFWTACPYCYILYEYPKAYED--CTLKCQNCKRAFHGV 270 (490)
Q Consensus 222 ~~~~~~~~~~~~~TFWT~Cp~C~~~YEY~R~YlN--~~LrCqnC~k~F~A~ 270 (490)
+.. -.....+|||.|+ |...|+|.+..++ ..+.|++|...|.++
T Consensus 101 ~m~----~~e~~~~f~~~Cr-CG~~f~i~~~~l~~~~~v~C~sCSl~~~v~ 146 (155)
T 2l6l_A 101 EMS----WNEGDHSFYLSCR-CGGKYSVSKDEAEEVSLISCDTCSLIIELL 146 (155)
T ss_dssp TSE----EETTTTEEEEECS-SSCEEEEETTHHHHCCEEECSSSSCEEEEE
T ss_pred Hhc----cccCCcEEEEcCC-CCCeEEecHHHhCCCCEEECCCCceEEEEE
Confidence 000 0002469999998 9999999999998 899999999999875
No 2
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=6.9e-19 Score=142.67 Aligned_cols=71 Identities=35% Similarity=0.512 Sum_probs=67.0
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
....|||+||||++.+ +.++||++||+|++++|||++..+++.+.|+.|++||++|+|+.+|..||..+..
T Consensus 4 ~~~~~~y~iLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 74 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGA-SDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSG 74 (78)
T ss_dssp SCSCCHHHHHTCCTTC-CHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSC
T ss_pred CCCCCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 4568999999999998 8999999999999999999999889999999999999999999999999998754
No 3
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.76 E-value=9.9e-19 Score=141.42 Aligned_cols=69 Identities=35% Similarity=0.546 Sum_probs=65.5
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhcccc
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQLS 141 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~ 141 (490)
.|||+||||++.+ +.++||++||+|++++|||++..+.+++.|+.|++||++|+||.+|..||..+...
T Consensus 3 ~~~y~iLgv~~~a-s~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 71 (77)
T 1hdj_A 3 KDYYQTLGLARGA-SDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG 71 (77)
T ss_dssp CCSHHHHTCCTTC-CHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred CCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence 6999999999998 89999999999999999999998899999999999999999999999999987643
No 4
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=143.51 Aligned_cols=73 Identities=27% Similarity=0.428 Sum_probs=67.9
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccccc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQLSQ 142 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~~ 142 (490)
....|||+||||++.+ +.++||++||+|++++|||+++.+.+++.|++|++||++|+|+.+|..||..+....
T Consensus 4 ~~~~~~y~iLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 76 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSA-SERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAF 76 (88)
T ss_dssp CCCCSHHHHHTCCTTC-CHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHH
T ss_pred CCCCCHHHHcCcCCCC-CHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence 3467999999999998 899999999999999999999988899999999999999999999999999886543
No 5
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.9e-18 Score=140.22 Aligned_cols=71 Identities=28% Similarity=0.405 Sum_probs=65.8
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNR-FPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~-~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
....|||+||||++.+ +.++||++||+|++++|||+++ .+.+++.|+.|++||++|+||.+|..||..+..
T Consensus 4 ~~~~~~y~iLgv~~~a-~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 75 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNA-SQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG 75 (79)
T ss_dssp SCCSCHHHHHTCCTTC-CHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred CCCCCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence 4468999999999999 8999999999999999999998 477899999999999999999999999998754
No 6
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=1.7e-18 Score=143.90 Aligned_cols=71 Identities=31% Similarity=0.371 Sum_probs=66.8
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
....|||+||||++.+ +.++||++||+|++++|||+++.+.+++.|++|++||++|+||.+|..||..+..
T Consensus 14 ~~~~d~y~iLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 84 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTA-SQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG 84 (88)
T ss_dssp SSSSCHHHHHTCCTTC-CHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred cCCCCHHHHcCcCCCC-CHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence 4568999999999998 8999999999999999999999889999999999999999999999999998753
No 7
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=140.57 Aligned_cols=71 Identities=35% Similarity=0.512 Sum_probs=65.5
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFP--FADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~--~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
....|||+||||++.+ +.++||++||+|++++|||+++.. .+++.|+.|++||++|+||.+|..||..+..
T Consensus 6 ~~~~~~y~iLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 78 (82)
T 2ej7_A 6 SGMVDYYEVLDVPRQA-SSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSG 78 (82)
T ss_dssp SSSCCHHHHTTCCTTC-CHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred CCCcCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 5578999999999998 899999999999999999999853 6889999999999999999999999998753
No 8
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.74 E-value=1.4e-18 Score=145.15 Aligned_cols=71 Identities=28% Similarity=0.458 Sum_probs=65.4
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC-------cchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF-------PFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~-------~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
....|||+||||++.+ +.++||++||+|+++||||+++. ..+++.|+.|++||++|+|+.+|..||..+..
T Consensus 13 ~~~~~~y~iLgv~~~a-s~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 13 TLKKDWYSILGADPSA-NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp SSCSCHHHHTTCCTTC-CHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred CCCCChHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence 3467999999999999 89999999999999999999874 56889999999999999999999999999864
No 9
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.5e-18 Score=144.99 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=65.7
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhCCchhhHhhhhhccc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNR-FPFADRSFKLVYDAWSILSNPARKIMYDTDLQL 140 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~-~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~ 140 (490)
....|||+||||++.+ +.++||++||+|+++||||++. .+.+++.|+.|++||+||+|+.+|..||..+..
T Consensus 14 ~~~~~~Y~vLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 85 (99)
T 2yua_A 14 YSRTALYDLLGVPSTA-TQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLS 85 (99)
T ss_dssp SCSSHHHHHHTCCTTC-CHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred CCccCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence 4567999999999999 8999999999999999999997 577899999999999999999999999997754
No 10
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=7.6e-18 Score=140.69 Aligned_cols=72 Identities=33% Similarity=0.486 Sum_probs=66.0
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhCCchhhHhhhhhcccc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF--PFADRSFKLVYDAWSILSNPARKIMYDTDLQLS 141 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~--~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~ 141 (490)
....|||+||||++.+ +.++||++||+|+++||||+++. ..+++.|++|++||++|+|+.+|..||..+...
T Consensus 6 ~~~~~~y~iLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 79 (92)
T 2dmx_A 6 SGMANYYEVLGVQASA-SPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDS 79 (92)
T ss_dssp CCCCCHHHHHTCCTTC-CTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCS
T ss_pred CCCcCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 5678999999999998 78999999999999999999975 368899999999999999999999999988644
No 11
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.73 E-value=6.8e-18 Score=135.39 Aligned_cols=68 Identities=25% Similarity=0.443 Sum_probs=61.6
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
....|||+||||++.+ +.++||++||+|++++|||+++. +.+.|+.|++||++|+||.+|..||..+.
T Consensus 5 ~~~~~~y~iLgl~~~a-~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 5 VKETGYYDVLGVKPDA-SDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp -CCCCHHHHHTCCTTC-CHHHHHHHHHHHHHHTCTTTCTT--CHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred cCCCCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCcC--HHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 4568999999999998 89999999999999999999863 47899999999999999999999998763
No 12
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5.8e-18 Score=146.78 Aligned_cols=72 Identities=25% Similarity=0.385 Sum_probs=66.8
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhCCchhhHhhhhhcccc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNR-FPFADRSFKLVYDAWSILSNPARKIMYDTDLQLS 141 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~-~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~ 141 (490)
....|||+||||++.+ +.++||++||+|+++||||+++ .+.+++.|++|++||++|+||.+|..||..+...
T Consensus 17 ~~~~d~Y~iLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~ 89 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELS-SVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQ 89 (112)
T ss_dssp CCCCCHHHHTTCCTTS-CHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhc
Confidence 4468999999999999 8999999999999999999998 5789999999999999999999999999988653
No 13
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=2.8e-17 Score=141.97 Aligned_cols=72 Identities=31% Similarity=0.464 Sum_probs=66.1
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhCCchhhHhhhhhcccc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNR-FPFADRSFKLVYDAWSILSNPARKIMYDTDLQLS 141 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~-~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~ 141 (490)
....|||+||||++.+ +.++||++||+|++++|||+++ .+.+++.|+.|++||++|+|+.+|..||..+...
T Consensus 14 ~~~~~~Y~vLgv~~~a-s~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~ 86 (109)
T 2ctw_A 14 TSGESLYHVLGLDKNA-TSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLG 86 (109)
T ss_dssp SCSCCHHHHHTCCTTC-CHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHH
T ss_pred CCCCCHHHHcCcCCCC-CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccc
Confidence 4467999999999999 8999999999999999999998 4778999999999999999999999999887643
No 14
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.9e-17 Score=137.64 Aligned_cols=71 Identities=23% Similarity=0.359 Sum_probs=64.3
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhccccc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQLSQ 142 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~~ 142 (490)
....|||+||||++.+ +.++||++||+|+++||||+++ +..+.|++|++||++|+|+.+|..||..+....
T Consensus 5 ~~~~~~y~iLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 75 (92)
T 2o37_A 5 VKETKLYDLLGVSPSA-NEQELKKGYRKAALKYHPDKPT--GDTEKFKEISEAFEILNDPQKREIYDQYGLEAA 75 (92)
T ss_dssp CSCCHHHHHHTCCTTC-CHHHHHHHHHHHHHHHCTTSTT--CCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHH
T ss_pred ccCCCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCC--ChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHh
Confidence 3568999999999998 8999999999999999999986 346799999999999999999999999886554
No 15
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.69 E-value=2.6e-17 Score=140.35 Aligned_cols=69 Identities=32% Similarity=0.527 Sum_probs=63.3
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhCCchhhHhhhhhcccc
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF--PFADRSFKLVYDAWSILSNPARKIMYDTDLQLS 141 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~--~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~ 141 (490)
.|||+||||++.+ +.++||++||+|++++|||+++. ..+++.|+.|++||++|+|+.+|..||..+...
T Consensus 2 ~d~Y~iLgv~~~a-s~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~ 72 (99)
T 2lgw_A 2 ASYYEILDVPRSA-SADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREG 72 (99)
T ss_dssp CCHHHHSSSCTTS-CHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred CCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 5899999999999 89999999999999999999975 358899999999999999999999999988643
No 16
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.68 E-value=8.8e-18 Score=143.32 Aligned_cols=70 Identities=26% Similarity=0.475 Sum_probs=65.0
Q ss_pred CCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhCCchhhHhhhhhcccc
Q 011245 71 YHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF-PFADRSFKLVYDAWSILSNPARKIMYDTDLQLS 141 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~-~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~ 141 (490)
..|||+||||++.+ +.++||++||+|++++|||+++. +.+++.|++|++||++|+||.+|..||..+...
T Consensus 2 ~~~~y~iLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (103)
T 1bq0_A 2 KQDYYEILGVSKTA-EEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA 72 (103)
T ss_dssp CCCSTTTTSSCSSC-CHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTS
T ss_pred CCCHHHHcCcCCCC-CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhh
Confidence 36999999999998 89999999999999999999984 778999999999999999999999999988643
No 17
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.67 E-value=4e-17 Score=140.43 Aligned_cols=71 Identities=25% Similarity=0.407 Sum_probs=65.7
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC----cchHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF----PFADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~----~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
....|||+||||++.+.+.++||++||+|++++|||++.. +.+++.|+.|++||++|+||.+|..||..+.
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 5578999999999987578999999999999999999976 6688999999999999999999999999875
No 18
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.1e-17 Score=136.51 Aligned_cols=63 Identities=27% Similarity=0.350 Sum_probs=59.2
Q ss_pred CCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHh
Q 011245 70 QYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIM 133 (490)
Q Consensus 70 ~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~ 133 (490)
...|||+||||++.+ +.++||++||+|+++||||+++.++++++|+.|++||++|+|+.+|+.
T Consensus 25 ~~~~~y~iLgv~~~a-s~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGA-SRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTC-CHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCC-CHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 358999999999999 899999999999999999999999999999999999999999988764
No 19
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.64 E-value=1.7e-16 Score=147.20 Aligned_cols=69 Identities=26% Similarity=0.443 Sum_probs=64.5
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhCCchhhHhhhhhcccc
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNR-FPFADRSFKLVYDAWSILSNPARKIMYDTDLQLS 141 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~-~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~ 141 (490)
.|||+||||++.+ +.++||++||+|++++|||+++ .+.++++|+.|++||++|+||.+|+.||..+...
T Consensus 2 ~~~y~~l~~~~~a-~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 71 (210)
T 3apq_A 2 QNFYSLLGVSKTA-SSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 71 (210)
T ss_dssp CCHHHHHTCCTTC-CHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTT
T ss_pred CCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccc
Confidence 5999999999999 8999999999999999999996 5789999999999999999999999999988643
No 20
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.59 E-value=8.3e-16 Score=143.09 Aligned_cols=69 Identities=22% Similarity=0.324 Sum_probs=62.2
Q ss_pred CCChHhhhccccCCC-CHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 71 YHDWYAILQLARFTH-SIELIATQYRKLALLLSPERNRFPF------ADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~-d~~eIKkaYRkLAl~lHPDKn~~~~------AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
..|||+||||++.+. |.++||++||+|+++||||+++... |.+.|+.|++||++|+||.+|+.||..+.
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 579999999999872 4899999999999999999988643 67899999999999999999999999885
No 21
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.57 E-value=4.6e-16 Score=134.64 Aligned_cols=85 Identities=15% Similarity=0.354 Sum_probs=65.5
Q ss_pred HHHHHHhhCCCCc-hHHHHHHHHHHHHhcccceeccCCCCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCc-
Q 011245 32 FAIRAREYDPSFE-APNQVLAVADTIIAGESIIITSNGNQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFP- 109 (490)
Q Consensus 32 fa~KAq~L~P~le-~~~qlLav~dvllAae~rv~~~~~~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~- 109 (490)
+-.+.+...+..+ .+++||..++.++ ....|||+||+++. | +.++||++||+|++++||||++..
T Consensus 11 ~~~~i~~W~~~~~~~ir~lL~~l~~~l-----------~~~~d~Y~vl~~~~-A-s~~eIKkAYRklal~~HPDK~~~~~ 77 (106)
T 3ag7_A 11 IDAKIRKWSSGKSGNIRSLLSTLQYIL-----------WSGSGWKPVPLMDM-I-EGNAVRKSYQRALLILHPDKLQQKG 77 (106)
T ss_dssp HHHHHHHHHTTTTTCHHHHHTTGGGTS-----------CTTSCCCCCCGGGS-C-SHHHHHHHHHHHHHHHCHHHHHHTT
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHh-----------cccCCHHHHcCCCC-C-CHHHHHHHHHHHHHHHCcCcCCCcc
Confidence 3344555555544 3666665544322 44589999999996 7 899999999999999999998742
Q ss_pred -------chHHHHHHHHHHHHHhCCch
Q 011245 110 -------FADRSFKLVYDAWSILSNPA 129 (490)
Q Consensus 110 -------~AeeaFk~I~eAYevLSDp~ 129 (490)
.|+++|+.|++||++|+|+.
T Consensus 78 ~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 78 ASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 36899999999999999985
No 22
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.56 E-value=2.2e-16 Score=160.24 Aligned_cols=69 Identities=32% Similarity=0.529 Sum_probs=0.0
Q ss_pred CCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 70 QYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 70 ~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
...|||+||||++.| +.++||+|||+||++||||+|+...|+++|++|++||++|+|+.+|+.||+.+.
T Consensus 26 ~~~d~Y~vLgv~~~a-s~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 26 ELKDYYAILGVQPTD-DLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccCHHHHcCcCCCC-CHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 347999999999999 789999999999999999999988899999999999999999999999999854
No 23
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.55 E-value=6.5e-16 Score=135.36 Aligned_cols=65 Identities=12% Similarity=0.077 Sum_probs=59.1
Q ss_pred CCChHhhhccccCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 71 YHDWYAILQLARFTHSI--ELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d~--~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
..|||+||||++.+ +. ++||++||+|++++||||++. +++|+.|++||+||+|+.+|+.||....
T Consensus 7 ~~~~Y~iLgv~~~a-s~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 7 SLQLMDLLGLERSA-WGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHTTCCTTS-CSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhHHHHcCCCCCC-CcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 36899999999998 66 999999999999999999865 5799999999999999999999997653
No 24
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.53 E-value=4.8e-15 Score=137.73 Aligned_cols=68 Identities=16% Similarity=0.298 Sum_probs=61.0
Q ss_pred CChHhhhccccCC-CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 72 HDWYAILQLARFT-HSIELIATQYRKLALLLSPERNRFPF------ADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 72 ~D~Y~ILgV~~~A-~d~~eIKkaYRkLAl~lHPDKn~~~~------AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
.|||+||||++.+ .+..+||++||+|+++||||+++... |.+.|+.|++||+||+||.+|+.||..+.
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 4899999999876 36899999999999999999998543 45799999999999999999999999875
No 25
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.53 E-value=5.5e-15 Score=141.33 Aligned_cols=70 Identities=21% Similarity=0.383 Sum_probs=61.7
Q ss_pred CCCChHhhhccccCC-CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 70 QYHDWYAILQLARFT-HSIELIATQYRKLALLLSPERNRFP------FADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 70 ~~~D~Y~ILgV~~~A-~d~~eIKkaYRkLAl~lHPDKn~~~------~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
...|||+||||++.+ .+.++||++||+|+++||||+++.. .|.+.|+.|++||+||+||.+|+.||..+.
T Consensus 41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~ 117 (207)
T 3bvo_A 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH 117 (207)
T ss_dssp TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 357999999999862 3789999999999999999998753 256789999999999999999999998764
No 26
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.53 E-value=2.3e-15 Score=141.82 Aligned_cols=64 Identities=25% Similarity=0.373 Sum_probs=59.1
Q ss_pred CCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHHHhCCchhhHhh
Q 011245 70 QYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFPF----ADRSFKLVYDAWSILSNPARKIMY 134 (490)
Q Consensus 70 ~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~~----AeeaFk~I~eAYevLSDp~kRa~Y 134 (490)
...|||+||||++.+ +.++||++||+|+++|||||++... |++.|+.|++||++|+|+.+|+.|
T Consensus 115 ~~~d~Y~vLgv~~~A-s~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 115 AGETKWKPVGMADLV-TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp TTCCCCCCCCGGGGS-SHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CccchhhcCCCCCCC-CHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 347999999999999 8999999999999999999998644 789999999999999999999887
No 27
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.53 E-value=2e-15 Score=126.68 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=55.9
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhCCchhh
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNRF--PFADRSFKLVYDAWSILSNPARK 131 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~--~~AeeaFk~I~eAYevLSDp~kR 131 (490)
....|+|+||||.+++ +.++||++||+|+++||||+++. ..|++.|+.|++||++|+|...|
T Consensus 13 ~~~~~~y~vLgv~~~a-s~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 13 SILKEVTSVVEQAWKL-PESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp SCHHHHHHHHHHTTSS-CSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHhCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 3456999999999999 78999999999999999999986 35899999999999999998666
No 28
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.52 E-value=4.1e-15 Score=121.94 Aligned_cols=60 Identities=15% Similarity=0.347 Sum_probs=55.3
Q ss_pred CChHhhhccccC--CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhh
Q 011245 72 HDWYAILQLARF--THSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYD 135 (490)
Q Consensus 72 ~D~Y~ILgV~~~--A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD 135 (490)
.++|+||||++. + +.++||++||+|++++|||++ ++.+.|+.|++||++|+|+.+|..++
T Consensus 11 ~~~y~iLgl~~~~~a-~~~eIk~aYr~la~~~HPDk~---~~~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 11 ERLLELLKLPRQLWG-DFGRMQQAYKQQSLLLHPDKG---GSHALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHTCCSSSTT-CHHHHHHHHHHHHHHSSGGGS---CCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCCCC-CHHHHHHHHHHHHHHHCcCCC---CCHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 589999999998 8 899999999999999999997 45789999999999999999998854
No 29
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.51 E-value=1.7e-15 Score=141.89 Aligned_cols=65 Identities=14% Similarity=0.121 Sum_probs=57.6
Q ss_pred CCChHhhhccccCCCC--HHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhcc
Q 011245 71 YHDWYAILQLARFTHS--IELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDLQ 139 (490)
Q Consensus 71 ~~D~Y~ILgV~~~A~d--~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~ 139 (490)
..|||+||||+++| + .++||+|||+||+++|||+++. +++|+.|++||++|+||.+|+.||+.+.
T Consensus 10 ~~d~Y~vLGl~~~a-s~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 10 SLQLMDLLGLERSA-WGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHTTTCCGGG-TTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cccHHHHcCCCCCC-CcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 36899999999998 5 6999999999999999999865 4799999999999999999999999885
No 30
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.51 E-value=2.8e-15 Score=127.21 Aligned_cols=55 Identities=25% Similarity=0.400 Sum_probs=50.5
Q ss_pred CChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHHHhCC
Q 011245 72 HDWYAILQLARFTHSIELIATQYRKLALLLSPERNRFP----FADRSFKLVYDAWSILSN 127 (490)
Q Consensus 72 ~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~~~----~AeeaFk~I~eAYevLSD 127 (490)
.++|+||||++.+ +.++||+|||+|++++|||||+.. .|+++|+.|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~a-s~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLV-TPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSS-SHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 5899999999999 899999999999999999999853 378999999999999975
No 31
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.47 E-value=1.4e-14 Score=135.92 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=60.7
Q ss_pred CCCCChHhhh------cccc-CCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhhc
Q 011245 69 NQYHDWYAIL------QLAR-FTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTDL 138 (490)
Q Consensus 69 ~~~~D~Y~IL------gV~~-~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~ 138 (490)
....|||+|| |+.+ .+ +..+||++||+|++++|||+++. +.+.|+.|++||+||+||.+|+.||..+
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a-~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTI-DQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCC-CHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCCHHHHhccccccCCCCCCC-CHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 4467999999 4665 56 89999999999999999999876 7889999999999999999999999987
No 32
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.45 E-value=1.7e-13 Score=133.80 Aligned_cols=116 Identities=25% Similarity=0.276 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhcccceeccCCCCCCChHhhhccccCCCCHHHH
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTIIAGESIIITSNGNQYHDWYAILQLARFTHSIELI 90 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvllAae~rv~~~~~~~~~D~Y~ILgV~~~A~d~~eI 90 (490)
.-+..+|..++..++++.|...++++.+++|....+...+..+...+.. ....++|.+||+.+.+ +.++|
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---------~~~~~~y~~lg~~~~~-~~~~~ 399 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ---------SQKRDYYKILGVKRNA-KKQEI 399 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH---------HHSCCSGGGSCSSTTC-CTTHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc---------ccchhHHHHhCCCccC-CHHHH
Confidence 3445556666777788888888888887777765555554444333221 2346999999999988 67999
Q ss_pred HHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHHHhCCchhhHhhhh
Q 011245 91 ATQYRKLALLLSPERNRFPF----ADRSFKLVYDAWSILSNPARKIMYDT 136 (490)
Q Consensus 91 KkaYRkLAl~lHPDKn~~~~----AeeaFk~I~eAYevLSDp~kRa~YD~ 136 (490)
+++|+++++.+|||+.+... +++.|+.|.+||++|+|+.+|..||.
T Consensus 400 ~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 400 IKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp HHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 99999999999999998644 88999999999999999999999997
No 33
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.42 E-value=5.4e-14 Score=112.91 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=50.8
Q ss_pred CChHhhhcccc-CCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhh
Q 011245 72 HDWYAILQLAR-FTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARK 131 (490)
Q Consensus 72 ~D~Y~ILgV~~-~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kR 131 (490)
.++|+||||++ .+ +.++||++||+|++.+|||++ +..+.|+.|++||++|+|+..|
T Consensus 14 ~~~y~iLgl~~~~a-~~~eIk~ayr~l~~~~HPDk~---g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 14 KEALQILNLTENTL-TKKKLKEVHRKIMLANHPDKG---GSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHTTCCTTTC-CHHHHHHHHHHHHHHHCGGGT---CCHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCCCCC-CHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHhhhhhc
Confidence 58999999998 68 899999999999999999996 5678999999999999987654
No 34
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.37 E-value=6.9e-14 Score=152.73 Aligned_cols=72 Identities=25% Similarity=0.419 Sum_probs=40.3
Q ss_pred CCCCChHhhhccccCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhCCchhhHhhhhhcccc
Q 011245 69 NQYHDWYAILQLARFTHSIELIATQYRKLALLLSPERNR-FPFADRSFKLVYDAWSILSNPARKIMYDTDLQLS 141 (490)
Q Consensus 69 ~~~~D~Y~ILgV~~~A~d~~eIKkaYRkLAl~lHPDKn~-~~~AeeaFk~I~eAYevLSDp~kRa~YD~~~~~~ 141 (490)
....|||+||||++.| +.++||+|||+|+++|||||++ .+.++++|++|++||++|+||.+|+.||+.+...
T Consensus 18 ~~~~~~y~~lg~~~~a-~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~ 90 (780)
T 3apo_A 18 RHDQNFYSLLGVSKTA-SSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 90 (780)
T ss_dssp -----CHHHHTCCTTC-CHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC----
T ss_pred CCCCCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccc
Confidence 4568999999999999 8999999999999999999996 5788999999999999999999999999988643
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.29 E-value=7.1e-07 Score=71.14 Aligned_cols=51 Identities=18% Similarity=0.097 Sum_probs=45.4
Q ss_pred ChHhhhccccC---CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCC
Q 011245 73 DWYAILQLARF---THSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSN 127 (490)
Q Consensus 73 D~Y~ILgV~~~---A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSD 127 (490)
+-|.||||++. + +.++|+++||+|....|||+. +....+..|++|+++|..
T Consensus 5 EA~~ILgv~~~~~~a-~~~~Ik~~yr~Lm~~nhPDkG---GS~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 5 ESCKILNIEESKGDL-NMDKINNRFNYLFEVNDKEKG---GSFYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHTTCCGGGTCC-SHHHHHHHHHHHHHHTCGGGT---CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcC-CHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHHH
Confidence 34899999998 7 899999999999999999994 777888999999999953
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.93 E-value=0.00096 Score=71.99 Aligned_cols=108 Identities=15% Similarity=0.014 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHH------------HHHhcccc---ee---------
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVAD------------TIIAGESI---II--------- 64 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~d------------vllAae~r---v~--------- 64 (490)
.+.-+..+|..++..|+++.|+..+.+|.++.|....+...++.+- .+..+... +.
T Consensus 533 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l 612 (681)
T 2pzi_A 533 VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQI 612 (681)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3456778889999999999999999999999998543322222210 00000000 00
Q ss_pred ---------ccCCCCCCChHhhhccccCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHH
Q 011245 65 ---------TSNGNQYHDWYAILQLARFTHSI--ELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSI 124 (490)
Q Consensus 65 ---------~~~~~~~~D~Y~ILgV~~~A~d~--~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYev 124 (490)
.-...+..|||.|||++... .. .+|+++||+||++-+++ ++.+.+|..|+.|
T Consensus 613 ~~~ll~~~l~~~~~~~~~~~~~lG~~~~~-~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 613 RALVLGGALDWLKDNKASTNHILGFPFTS-HGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV 675 (681)
T ss_dssp HHHHHHHHHHHHTSCCCSSSEETTEESSH-HHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCcccCCCCCCh-HHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence 00025677899999997643 22 55999999999965554 5789999999876
No 37
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=91.01 E-value=0.53 Score=37.72 Aligned_cols=45 Identities=13% Similarity=0.007 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
+.|+.+..+|..++..+++..|..++.++.+++|....+-..++.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~ 46 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAA 46 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 468899999999999999999999999999999987544333333
No 38
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=90.90 E-value=1.3 Score=33.80 Aligned_cols=37 Identities=8% Similarity=0.001 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
.+..+..+|..++..+++..|...+.+|..+.|....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 39 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV 39 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 5778899999999999999999999999999998643
No 39
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=90.70 E-value=1.5 Score=36.14 Aligned_cols=39 Identities=23% Similarity=0.176 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 7 RAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 7 kdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
-|.|..+..++..++..|+|+.|+.++.+|.+++|....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~ 43 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT 43 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 467888899999999999999999999999999998644
No 40
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=90.67 E-value=0.089 Score=53.35 Aligned_cols=28 Identities=4% Similarity=-0.116 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHhCC----chhhHhhhhhc
Q 011245 111 ADRSFKLVYDAWSILSN----PARKIMYDTDL 138 (490)
Q Consensus 111 AeeaFk~I~eAYevLSD----p~kRa~YD~~~ 138 (490)
.+++++.+.+..+-+.. ...-..||+..
T Consensus 357 ~eeal~~~~~~~~~i~~~~~~~~~~~~~~~~~ 388 (449)
T 3iot_A 357 VDAALAAAQTNAAAMATLEKLMKAFESLKSFQ 388 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 45555555554444432 33345567654
No 41
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=86.87 E-value=1.7 Score=36.04 Aligned_cols=48 Identities=17% Similarity=0.058 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 5 FNRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 5 ~NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
.|-+.|+.+.+++..++..|+|+.|+..+.+|.+++|....+-..++.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 55 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAA 55 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhh
Confidence 577889999999999999999999999999999999987554333333
No 42
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=86.52 E-value=0.2 Score=40.02 Aligned_cols=28 Identities=29% Similarity=0.556 Sum_probs=25.1
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCcee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
+||.|+.-.+|... ...|.|++|++.|-
T Consensus 10 ~CP~ck~~L~~~~~--~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 10 VCPLCKGPLVFDKS--KDELICKGDRLAFP 37 (68)
T ss_dssp BCTTTCCBCEEETT--TTEEEETTTTEEEE
T ss_pred ECCCCCCcCeEeCC--CCEEEcCCCCcEec
Confidence 89999999999775 78999999999885
No 43
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=86.36 E-value=0.21 Score=40.00 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.9
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCcee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
+||.|+.-.+|... ...|.|++|++.|-
T Consensus 10 ~CP~ck~~L~~~~~--~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 10 VCPVTKGRLEYHQD--KQELWSRQAKLAYP 37 (68)
T ss_dssp BCSSSCCBCEEETT--TTEEEETTTTEEEE
T ss_pred ECCCCCCcCeEeCC--CCEEEcCCCCcEec
Confidence 89999999998765 68899999999885
No 44
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=85.44 E-value=0.24 Score=39.81 Aligned_cols=28 Identities=32% Similarity=0.661 Sum_probs=25.1
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCcee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
+||.|+.-.+|... ...|.|++|++.|-
T Consensus 10 ~CP~ck~~L~~~~~--~~~LiC~~cg~~YP 37 (70)
T 2js4_A 10 VCPVCKGRLEFQRA--QAELVCNADRLAFP 37 (70)
T ss_dssp BCTTTCCBEEEETT--TTEEEETTTTEEEE
T ss_pred ECCCCCCcCEEeCC--CCEEEcCCCCceec
Confidence 89999999998875 78899999999885
No 45
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=85.25 E-value=0.26 Score=39.54 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=25.0
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCcee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
+||.|+.-.+|... ...|.|++|++.|-
T Consensus 10 ~CP~ck~~L~~~~~--~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 10 ACPICKGPLKLSAD--KTELISKGAGLAYP 37 (69)
T ss_dssp CCTTTCCCCEECTT--SSEEEETTTTEEEE
T ss_pred eCCCCCCcCeEeCC--CCEEEcCCCCcEec
Confidence 89999999998775 78999999999885
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=84.39 E-value=4.7 Score=33.95 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHH
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQV 49 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~ql 49 (490)
+.+.-+..++..++..|||+.|+..+.+|.+++|....+-..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 44 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLK 44 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 356678889999999999999999999999999986544333
No 47
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=84.16 E-value=0.31 Score=38.93 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.7
Q ss_pred eCcchhhhhcchhhhcCceeeccccCCcee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
+||.|+.-.+|... ...|.|++|+..|-
T Consensus 12 ~CP~ck~~L~~~~~--~g~LvC~~c~~~YP 39 (67)
T 2jny_A 12 ACPKDKGPLRYLES--EQLLVNERLNLAYR 39 (67)
T ss_dssp BCTTTCCBCEEETT--TTEEEETTTTEEEE
T ss_pred CCCCCCCcCeEeCC--CCEEEcCCCCcccc
Confidence 89999999888764 78899999998885
No 48
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=81.03 E-value=5 Score=33.03 Aligned_cols=50 Identities=10% Similarity=0.011 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 3 TGFNRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 3 m~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
...+-+.+..+..+|..++..|+++.|..++.++..++|.....-..++.
T Consensus 11 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 60 (142)
T 2xcb_A 11 RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGA 60 (142)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 34566788899999999999999999999999999999987654444333
No 49
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=80.84 E-value=2 Score=36.34 Aligned_cols=48 Identities=8% Similarity=0.107 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 011245 6 NRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVA 53 (490)
Q Consensus 6 NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~ 53 (490)
+.+.+..++.+|..++..++|+.|+.++.+|.+++|....+-..++.+
T Consensus 27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 74 (150)
T 4ga2_A 27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLL 74 (150)
T ss_dssp HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456777788999999999999999999999999999976655555443
No 50
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=80.73 E-value=3.2 Score=34.86 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 6 NRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 6 NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
+...+..+..+|..++..++|+.|..++.++..++|....+-..++.
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 53 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAA 53 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHH
Confidence 45789999999999999999999999999999999986544333333
No 51
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=80.01 E-value=4.7 Score=33.69 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
.+.-+..+|..++..+++..|+.++.+|.+++|.....
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a 99 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKA 99 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHH
Confidence 34566778889999999999999999999999986543
No 52
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=79.44 E-value=3 Score=32.84 Aligned_cols=38 Identities=13% Similarity=0.281 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
.+.-+..+|..++..++++.|..++.++..++|.....
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 55 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA 55 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHH
Confidence 45667888999999999999999999999999986543
No 53
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=79.33 E-value=3 Score=32.74 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHH
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVL 50 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlL 50 (490)
.+.-+..+|..++..++++.|+.++.++.+++|....+-..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 47 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHL 47 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 456788899999999999999999999999999976543333
No 54
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=78.95 E-value=6.8 Score=29.60 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 13 WLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 13 ~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
.+..|..++..++++.|...+.++..++|....
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 35 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKD 35 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Confidence 467888999999999999999999999998643
No 55
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=78.87 E-value=5.1 Score=30.64 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 4 GFNRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 4 ~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
..+...+..+..+|..++..++++.|..++.++..++|....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 47 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV 47 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH
Confidence 345678889999999999999999999999999999997643
No 56
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=78.75 E-value=4.2 Score=35.34 Aligned_cols=49 Identities=16% Similarity=-0.044 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 4 GFNRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 4 ~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
..+.+.+..+..+|..++..|+++.|..++.++..++|.....-..++.
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~ 78 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAA 78 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567888899999999999999999999999999999997655444444
No 57
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=78.26 E-value=5.6 Score=29.87 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
+.+..+..+|..++..+++..|..++.++..++|....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 39 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV 39 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 36788899999999999999999999999999997643
No 58
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=77.77 E-value=5.3 Score=33.45 Aligned_cols=36 Identities=19% Similarity=0.053 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
+.-+..+|..++..++++.|+.++.+|..++|....
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 80 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK 80 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 445667888899999999999999999999998643
No 59
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=76.73 E-value=7.3 Score=28.44 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
..+.-+..+|..++..++++.|..++.++..+.|...
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 43 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 43 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 4577788899999999999999999999999998764
No 60
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=75.06 E-value=9.8 Score=27.72 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHH
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVL 50 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlL 50 (490)
.-+..+|..++..++++.|..++.++..++|........+
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 83 (91)
T 1na3_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4456777888999999999999999999999865543333
No 61
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=74.53 E-value=6.2 Score=32.48 Aligned_cols=44 Identities=18% Similarity=0.012 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
.+.-+..+|..++..+++..|+..+.+|.+++|.....-..++.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 89 (126)
T 4gco_A 46 NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 34556677777888888888888888888888876544333333
No 62
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=74.34 E-value=37 Score=29.06 Aligned_cols=37 Identities=11% Similarity=-0.032 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
+.+..++.+|..++..++|..|..++.+|..+.|...
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~ 72 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE 72 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 4788899999999999999999999999999998855
No 63
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=73.87 E-value=7.1 Score=30.92 Aligned_cols=42 Identities=12% Similarity=0.104 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHH
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQV 49 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~ql 49 (490)
..+..+..+|..++..++++.|..++.++..++|....+-..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 48 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTN 48 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHH
Confidence 357788999999999999999999999999999986544333
No 64
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=73.34 E-value=6.7 Score=32.75 Aligned_cols=49 Identities=8% Similarity=0.028 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHh
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE-APNQVLAVADTIIA 58 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le-~~~qlLav~dvllA 58 (490)
+.-+..+|..++..|+++.|+..+.+|..++|... .+...+..+...+.
T Consensus 97 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 97 EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999999976 65656655555443
No 65
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=71.98 E-value=1.2 Score=34.18 Aligned_cols=26 Identities=35% Similarity=0.726 Sum_probs=22.9
Q ss_pred eCcchhhhhcchhhhcCceeecc--ccCCcee
Q 011245 239 ACPYCYILYEYPKAYEDCTLKCQ--NCKRAFH 268 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~YlN~~LrCq--nC~k~F~ 268 (490)
+||.|+.-.+|.. ..|.|. .|+..|-
T Consensus 12 ~CP~c~~~L~~~~----~~L~C~~~~c~~~YP 39 (56)
T 2kpi_A 12 ACPACHAPLEERD----AELICTGQDCGLAYP 39 (56)
T ss_dssp CCSSSCSCEEEET----TEEEECSSSCCCEEE
T ss_pred eCCCCCCcceecC----CEEEcCCcCCCcEEe
Confidence 9999999888765 889999 8998885
No 66
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=71.79 E-value=9 Score=31.45 Aligned_cols=39 Identities=13% Similarity=-0.127 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQ 48 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~q 48 (490)
+.-+..++..++..++++.|...+.+|..++|.....-.
T Consensus 52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 444667788899999999999999999999998765433
No 67
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=71.12 E-value=12 Score=29.11 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
.+..+|..++..+++..|...+.++...+|...
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 36 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGV 36 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc
Confidence 356778888888999999999999888888865
No 68
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=70.91 E-value=13 Score=29.30 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHH
Q 011245 7 RAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLA 51 (490)
Q Consensus 7 kdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLa 51 (490)
.+.+.-+..+|..++..++++.|...+.++.+++|....+-..++
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 68 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA 68 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 456677888999999999999999999999999999754433333
No 69
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=70.75 E-value=9.9 Score=30.72 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 7 RAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 7 kdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
.+.+..+..+|..++..+++..|..++.++..++|....+
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 49 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY 49 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH
Confidence 3578889999999999999999999999999999986443
No 70
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=70.59 E-value=10 Score=32.03 Aligned_cols=49 Identities=14% Similarity=-0.017 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 4 GFNRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 4 ~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
..+.+.+..+..+|..++..|++..|..++.++..++|.....-..++.
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 63 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA 63 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHH
Confidence 3456788889999999999999999999999999999987654444443
No 71
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=70.04 E-value=7.5 Score=31.64 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
..++.+|..++..|+++.|+..+.+|..++|.....-..++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 59 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGL 59 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 357888999999999999999999999999987554444333
No 72
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=69.96 E-value=33 Score=25.94 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
+.+..+..+|..++..+++..|..++.++..++|....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 39 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT 39 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Confidence 46788899999999999999999999999999988643
No 73
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=69.41 E-value=54 Score=28.12 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 011245 7 RAEAERWLSVAEKVLSSHDFQGARSFAIRAREYD 40 (490)
Q Consensus 7 kdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~ 40 (490)
+.+|+.+..+|..++..++++.|..++.++..++
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~ 35 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH 35 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999998
No 74
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=68.82 E-value=13 Score=31.22 Aligned_cols=38 Identities=8% Similarity=-0.129 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPN 47 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~ 47 (490)
+.-+..+|..++..++++.|...+.+|..++|.....-
T Consensus 55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 34456677888999999999999999999999876543
No 75
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=68.60 E-value=13 Score=28.96 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
.-+..+|..++..++++.|..++.++..++|...
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD 73 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc
Confidence 4566778888888999999999999888888863
No 76
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=68.50 E-value=43 Score=30.28 Aligned_cols=37 Identities=24% Similarity=0.174 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 011245 7 RAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 7 kdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l 43 (490)
..+|..++.++..++..|+|+.|...+.+|.++.|..
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~ 44 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM 44 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC
Confidence 4689999999999999999999999999999999993
No 77
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=67.95 E-value=15 Score=27.61 Aligned_cols=34 Identities=9% Similarity=0.145 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l 43 (490)
+.-+..+|..++..++++.|+..+.++..++|..
T Consensus 38 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 38 PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 4446678888999999999999999999999987
No 78
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=67.63 E-value=11 Score=30.57 Aligned_cols=38 Identities=24% Similarity=0.097 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPN 47 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~ 47 (490)
+.-+..+|..++..|+++.|+..+.+|.+++|.....-
T Consensus 51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 88 (121)
T 1hxi_A 51 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH 88 (121)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 44556677788899999999999999999999865443
No 79
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=67.55 E-value=5.8 Score=40.29 Aligned_cols=37 Identities=5% Similarity=-0.188 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
+.+..+..++..++..++|..|...+.+|..+.|...
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~ 302 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY 302 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc
Confidence 5678899999999999999999999999999999873
No 80
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=66.45 E-value=10 Score=29.26 Aligned_cols=37 Identities=14% Similarity=0.043 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
.....+..+|..++..++++.|..++.++..++|...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 50 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA 50 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 3567788899999999999999999999999998764
No 81
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.30 E-value=24 Score=27.77 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 011245 7 RAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 7 kdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l 43 (490)
...+..+..+|..++..+++..|..++.++.+++|..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 61 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP 61 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc
Confidence 4568889999999999999999999999999999974
No 82
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=65.79 E-value=15 Score=27.18 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
.-+..+|..++..+++..|...+.++..++|....+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 42 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY 42 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH
Confidence 345667777888888888888888888888875443
No 83
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=65.32 E-value=2 Score=36.64 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=24.0
Q ss_pred eCcchhhhhcchhh-------------------------hcCceeeccccCCcee
Q 011245 239 ACPYCYILYEYPKA-------------------------YEDCTLKCQNCKRAFH 268 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~-------------------------YlN~~LrCqnC~k~F~ 268 (490)
+||.|+.-.+|... .+...|.|++|+..|-
T Consensus 10 aCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YP 64 (97)
T 2k5r_A 10 CSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFR 64 (97)
T ss_dssp CCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEE
T ss_pred ECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCcc
Confidence 89999987777654 1356899999999985
No 84
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=64.76 E-value=27 Score=27.96 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 011245 9 EAERWLSVAEKVLSSHD---FQGARSFAIRAREYDPSFEAPNQVLAVA 53 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D---~~gAkrfa~KAq~L~P~le~~~qlLav~ 53 (490)
.++.+...|+.++..++ ...|+.++.+|..++|.......++...
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~ 52 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIAND 52 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 56778888988876666 7999999999999999987766666553
No 85
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=64.49 E-value=15 Score=29.01 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
+.-+..+|..++..++++.|...+.++.+++|.....
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 74 (126)
T 3upv_A 38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 74 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence 4456778888999999999999999999999987543
No 86
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=63.84 E-value=21 Score=27.01 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
+.-+..+|..++..+++..|..++.++..++|....+
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 82 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKA 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHH
Confidence 4556778888888899999999999988888876443
No 87
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=63.68 E-value=27 Score=33.67 Aligned_cols=38 Identities=3% Similarity=-0.159 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 7 RAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 7 kdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
.+.+..+..++..++..++|..|...+.+|..+.|...
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~ 181 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES 181 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccc
Confidence 35688899999999999999999999999999999973
No 88
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=63.59 E-value=4.8 Score=39.10 Aligned_cols=35 Identities=9% Similarity=0.022 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
-++.+|..++..++|..|+.++.+|.+++|....+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a 266 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKA 266 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 45778899999999999999999999999976543
No 89
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=63.56 E-value=19 Score=26.84 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
+.-+..+|..++..++++.|...+.++..++|....+
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 74 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG 74 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHH
Confidence 4557778888899999999999999999999885543
No 90
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=63.51 E-value=3 Score=35.27 Aligned_cols=37 Identities=32% Similarity=0.690 Sum_probs=29.8
Q ss_pred cchhhhhcchhhhcCceeeccccCCceeeeeccCCCCCCC
Q 011245 241 PYCYILYEYPKAYEDCTLKCQNCKRAFHGVMIASPPVTEK 280 (490)
Q Consensus 241 p~C~~~YEY~R~YlN~~LrCqnC~k~F~A~ev~~pp~~g~ 280 (490)
|-|+-.|||.|. .-+..|+.|+-.|... -..|+|.|.
T Consensus 44 PvCrpCyEYErk--eG~q~CpqCktrYkr~-kgsp~v~GD 80 (93)
T 1weo_A 44 PACRPCYEYERR--EGTQNCPQCKTRYKRL-RGSPRVEGD 80 (93)
T ss_dssp CCCHHHHHHHHH--TSCSSCTTTCCCCCCC-TTCCCCTTS
T ss_pred hhhHHHHHHHHh--ccCccccccCCccccc-cCCCCcccc
Confidence 678899999999 7778999999999865 345567663
No 91
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=63.37 E-value=22 Score=33.60 Aligned_cols=38 Identities=11% Similarity=-0.005 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 7 RAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 7 kdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
-..+..++.+|..++..|+++.|..++.++..+.|...
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~ 82 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL 82 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh
Confidence 56788889999999999999999999999999998854
No 92
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.34 E-value=15 Score=29.02 Aligned_cols=38 Identities=24% Similarity=0.070 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
.+.-+..+|..++..++++.|+..+.++..++|.....
T Consensus 64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 36778888999999999999999999999999986443
No 93
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=63.17 E-value=1.5 Score=44.27 Aligned_cols=11 Identities=18% Similarity=0.039 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 011245 9 EAERWLSVAEK 19 (490)
Q Consensus 9 EA~R~l~iAek 19 (490)
++.++++.-.+
T Consensus 187 ~~~~al~~~~~ 197 (449)
T 3iot_A 187 GAKAGLTFLVD 197 (449)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 94
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=62.57 E-value=4.3 Score=38.56 Aligned_cols=32 Identities=9% Similarity=0.033 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l 43 (490)
-+..+|..++..++++.|..++.++..+.+..
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 296 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL 296 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 44556666667777777777777777776654
No 95
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=62.49 E-value=18 Score=27.78 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHH
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLA 51 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLa 51 (490)
.+.-+..+|..++..++++.|..++.++..++|.....-..++
T Consensus 49 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 49 DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3556778888889999999999999999999988654433333
No 96
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=62.19 E-value=21 Score=28.68 Aligned_cols=41 Identities=20% Similarity=-0.002 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVL 50 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlL 50 (490)
+.-+..+|..++..+++..|..++.++..++|.....-..+
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 87 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 55677888899999999999999999999999865443333
No 97
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=61.90 E-value=17 Score=31.38 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
+.-+..+|..++..++++.|+.++.++..++|....+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 124 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKA 124 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHH
Confidence 4556778888888899999999999999888876543
No 98
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=61.69 E-value=2.7 Score=40.07 Aligned_cols=36 Identities=19% Similarity=0.540 Sum_probs=29.0
Q ss_pred CCceeeeCcchhhhhcchhhhcC-------ceeeccccCCcee
Q 011245 233 GPRFWTACPYCYILYEYPKAYED-------CTLKCQNCKRAFH 268 (490)
Q Consensus 233 ~~TFWT~Cp~C~~~YEY~R~YlN-------~~LrCqnC~k~F~ 268 (490)
-.-|+-.||.|.+.+.|.-++.. .-|.|++|+..|.
T Consensus 18 c~~l~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~~~ 60 (206)
T 3flo_B 18 TVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFT 60 (206)
T ss_dssp CCCEEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBCC
T ss_pred CceeEEECCCCCCccCCCCcccCCCcccccccccCCCCCCcCC
Confidence 45799999999999999977543 3578999999763
No 99
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=61.34 E-value=24 Score=26.38 Aligned_cols=35 Identities=20% Similarity=0.113 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
-+..+|..++..++++.|+..+.++..++|.....
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 56777888899999999999999999999997654
No 100
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=60.75 E-value=19 Score=28.34 Aligned_cols=36 Identities=22% Similarity=-0.003 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
+.-+..+|..++..++++.|...+.++.+++|....
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 78 (137)
T 3q49_B 43 AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 78 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH
Confidence 345667788889999999999999999999998544
No 101
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=60.65 E-value=18 Score=31.30 Aligned_cols=41 Identities=15% Similarity=0.018 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVL 50 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlL 50 (490)
+.-|..++..++..|+|+.|...+.+|..++|.....-..+
T Consensus 70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 44567778889999999999999999999999976543333
No 102
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=60.56 E-value=25 Score=29.39 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=25.1
Q ss_pred HHHHHHHHHH-HHhcCCH--HHHHHHHHHHHhhCCCCchHHHH
Q 011245 10 AERWLSVAEK-VLSSHDF--QGARSFAIRAREYDPSFEAPNQV 49 (490)
Q Consensus 10 A~R~l~iAek-~L~~~D~--~gAkrfa~KAq~L~P~le~~~ql 49 (490)
+.-+..+|.. ++..+++ +.|...+.++..++|.....-..
T Consensus 78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 120 (177)
T 2e2e_A 78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML 120 (177)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHH
Confidence 3445566666 5567776 77777777777777765443333
No 103
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=60.53 E-value=27 Score=26.10 Aligned_cols=36 Identities=25% Similarity=0.453 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
+.-+..+|..++..++++.|..++.++..+.|....
T Consensus 43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 78 (125)
T 1na0_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH
Confidence 456677888888899999999999999888887543
No 104
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=60.37 E-value=14 Score=33.15 Aligned_cols=35 Identities=9% Similarity=-0.090 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
..++.+|..++..|++..|+..+.++..++|....
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 183 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW 183 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch
Confidence 34578899999999999999999999999998543
No 105
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=60.04 E-value=19 Score=28.66 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDP 41 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P 41 (490)
-|+-|.+++..++..+||..|...+++|..+.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~ 36 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLD 36 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhh
Confidence 367899999999999999999999999988763
No 106
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=59.80 E-value=22 Score=26.97 Aligned_cols=34 Identities=9% Similarity=0.169 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l 43 (490)
+.-+..+|..++..++++.|..++.++..+.|..
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 112 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCH
Confidence 5567788888999999999999999999999853
No 107
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=59.51 E-value=24 Score=26.43 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
.+.-+..+|..++..+++..|..++.++..++|...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 43 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 43 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH
Confidence 367788899999999999999999999999998754
No 108
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=58.81 E-value=28 Score=27.72 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 011245 14 LSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTIIA 58 (490)
Q Consensus 14 l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvllA 58 (490)
..+|..+++.|++..|..++++|..+.|....+..-+...+.++.
T Consensus 50 ~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~~~~ 94 (104)
T 2v5f_A 50 DYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMA 94 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHHHH
Confidence 455566778899999999999999999998665444444444443
No 109
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=58.66 E-value=26 Score=31.11 Aligned_cols=36 Identities=17% Similarity=0.026 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
.+..+...|..++..|+++.|..++.++..+.|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~ 39 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL 39 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH
Confidence 456778889999999999999999999999988853
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=58.23 E-value=16 Score=32.36 Aligned_cols=35 Identities=11% Similarity=0.028 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
++.+..+|..++..|+++.|...+.++...+|.-.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~ 38 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP 38 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 44566677777777788888777777777777643
No 111
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=57.87 E-value=1.2e+02 Score=29.08 Aligned_cols=36 Identities=11% Similarity=0.071 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 011245 7 RAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPS 42 (490)
Q Consensus 7 kdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~ 42 (490)
++.|+.++.+|..++..|+|..|...+.++..+.|.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 38 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED 38 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc
Confidence 568999999999999999999999999999999985
No 112
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=57.77 E-value=27 Score=31.61 Aligned_cols=49 Identities=8% Similarity=0.127 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTIIA 58 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvllA 58 (490)
.+-+..+|.-.+..+||..|++++.++.++.|.......+..+++..+.
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 119 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 3445667777899999999999999999999998887778777776554
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=57.31 E-value=3.5 Score=35.23 Aligned_cols=47 Identities=15% Similarity=0.029 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 6 NRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 6 NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
|......++..|..++..|+++.|...+.++..++|....+...++.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 48 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKAD 48 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 44555667888888899999999999999988888886654444443
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=57.00 E-value=18 Score=33.78 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
.+..++..|..++..|+++.|...++++..++|....+...++.
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 159 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAE 159 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHH
Confidence 34567889999999999999999999999999997655444443
No 115
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=56.88 E-value=22 Score=27.84 Aligned_cols=35 Identities=9% Similarity=-0.014 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPS 42 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~ 42 (490)
..+.-+..+|..++..++++.|..++.++..+.+.
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 41 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 41 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 44555555555555666666666666555555443
No 116
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=56.27 E-value=14 Score=27.45 Aligned_cols=32 Identities=9% Similarity=0.101 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPS 42 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~ 42 (490)
.-+..+|..++..++++.|..++.++.++.|.
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 34566777888899999999999999999988
No 117
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=56.12 E-value=5.2 Score=29.20 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=22.3
Q ss_pred eCcchhh-hhcchhhhcCceeeccccCCceee
Q 011245 239 ACPYCYI-LYEYPKAYEDCTLKCQNCKRAFHG 269 (490)
Q Consensus 239 ~Cp~C~~-~YEY~R~YlN~~LrCqnC~k~F~A 269 (490)
.||.|.. ...|.. ....|.|..|+-.|--
T Consensus 7 ~CP~C~~~~l~~d~--~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 7 VCPACESAELIYDP--ERGEIVCAKCGYVIEE 36 (50)
T ss_dssp SCTTTSCCCEEEET--TTTEEEESSSCCBCCC
T ss_pred eCcCCCCcceEEcC--CCCeEECcccCCcccc
Confidence 6999987 666644 3678999999987754
No 118
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=55.89 E-value=44 Score=36.66 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
+.|+-+..+|..++..|+++.|..++++|.+++|....
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~ 44 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 44 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 34555566666666667777777777777666666543
No 119
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=55.29 E-value=18 Score=29.51 Aligned_cols=36 Identities=11% Similarity=-0.060 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHH
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPN 47 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~ 47 (490)
-+..++..+...++++.|+.++.+|..++|..+.+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 344556667789999999999999999999755443
No 120
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=54.92 E-value=28 Score=31.47 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
+++.++.+|..++..|+++.|..++.++..++|....
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 38 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI 38 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH
Confidence 4566777777777777888777777777777777543
No 121
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=54.66 E-value=21 Score=32.01 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
..+..+...|..++..|+|..|...+.++...+|..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 49 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE 49 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc
Confidence 4577888999999999999999999999999999863
No 122
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=54.45 E-value=27 Score=34.50 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
..+.-+..+|..++..++++.|+.++.+|.+++|....
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 308 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 308 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHH
Confidence 34556677888899999999999999999999997543
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=54.18 E-value=26 Score=29.80 Aligned_cols=43 Identities=7% Similarity=-0.010 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
+.-+..+|..++..++++.|..++.++..++|.....-..++.
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4567788888999999999999999999999987654443333
No 124
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=54.13 E-value=36 Score=31.54 Aligned_cols=36 Identities=17% Similarity=0.026 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
.+..+...|..++..|++..|..++.++..+.|...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~ 43 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL 43 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH
Confidence 566788899999999999999999999999988753
No 125
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=52.71 E-value=27 Score=31.57 Aligned_cols=33 Identities=6% Similarity=-0.069 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 13 WLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 13 ~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
+..+|..++..++++.|..++.++..++|....
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 307 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVN 307 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH
Confidence 556777888888888888888888888887544
No 126
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=52.20 E-value=6.6 Score=30.03 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011245 1 MATGFNRAEAERWLSVAEKVLSSHDFQGARSFAIR 35 (490)
Q Consensus 1 M~m~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~K 35 (490)
|+||..|++|+++|.+| .+|.+-|..+++.
T Consensus 19 m~mGFsr~~ai~AL~~a-----~nnve~AaniLle 48 (52)
T 2ooa_A 19 MGEGYAFEEVKRALEIA-----QNNVEVARSILRE 48 (52)
T ss_dssp HHTTCCHHHHHHHHHHT-----TTCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence 78999999999999876 4588877776653
No 127
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=51.48 E-value=35 Score=30.00 Aligned_cols=46 Identities=9% Similarity=0.123 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTII 57 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvll 57 (490)
-+..+|.-+++.|||..|++++....+..|....+..|..+++..+
T Consensus 76 ~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 76 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3456677799999999999999999999999887777777766544
No 128
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=51.45 E-value=34 Score=29.99 Aligned_cols=31 Identities=13% Similarity=0.046 Sum_probs=27.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 16 VAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 16 iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
+|..++..|+++.|...+.++.+++|.....
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 90 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDC 90 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 8888899999999999999999999986543
No 129
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=50.26 E-value=21 Score=29.88 Aligned_cols=37 Identities=11% Similarity=0.019 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
.+.-+..+|..++..++++.|...+.+|.+++|....
T Consensus 64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 100 (150)
T 4ga2_A 64 DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKD 100 (150)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHH
Confidence 3455667788889999999999999999999998654
No 130
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=50.16 E-value=14 Score=28.73 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
+.-+..+|..++..|+++.|+.++.++..+.|...
T Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (115)
T 2kat_A 53 SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 34556778888999999999999999999887643
No 131
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=49.55 E-value=10 Score=30.49 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=25.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011245 1 MATGFNRAEAERWLSVAEKVLSSHDFQGARSFAIR 35 (490)
Q Consensus 1 M~m~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~K 35 (490)
|+||..+++|+++|..+ .+|++.|..++..
T Consensus 37 ~eMGF~r~~a~~AL~~~-----~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 37 VAMGFDRTQVEVALAAA-----DDDLTVAVEILMS 66 (73)
T ss_dssp HTTTCCHHHHHHHHHHH-----TSCHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence 67999999999999854 5799999888764
No 132
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=49.49 E-value=18 Score=25.45 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=23.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011245 1 MATGFNRAEAERWLSVAEKVLSSHDFQGARSFAI 34 (490)
Q Consensus 1 M~m~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~ 34 (490)
|+||..+++|.+++..+ .+|.+.|..++.
T Consensus 12 ~~MGF~~~~a~~AL~~~-----~~n~e~A~~~L~ 40 (43)
T 2g3q_A 12 SGMGFTEEEAHNALEKC-----NWDLEAATNFLL 40 (43)
T ss_dssp HTTTSCHHHHHHHHHHH-----TSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHh-----CcCHHHHHHHHH
Confidence 57999999999988854 568998887764
No 133
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=49.33 E-value=81 Score=29.36 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHH
Q 011245 86 SIELIATQYRKLALLLSPERNRFPFADRSFKLVYDA 121 (490)
Q Consensus 86 d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eA 121 (490)
+...+-.+|..|+..+.- .....|.+.|+..-+.
T Consensus 111 ~~~~~a~~~~~lg~~~~~--g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 111 TPDTAAMALDRAGKLMEP--LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp CHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHH
Confidence 344556677777777754 2223344444443333
No 134
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=49.03 E-value=32 Score=34.04 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVAD 54 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~d 54 (490)
.+.-+..+|..++..++++.|+..+.+|.++.|....+...++.+.
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4556677888899999999999999999999999766555544443
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=49.02 E-value=32 Score=33.05 Aligned_cols=40 Identities=23% Similarity=0.102 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQV 49 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~ql 49 (490)
+.-+..+|..++..++++.|+.++.+|.+++|....+-..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 235 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR 235 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 6778889999999999999999999999999986543333
No 136
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=48.14 E-value=37 Score=30.33 Aligned_cols=47 Identities=6% Similarity=0.030 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTIIA 58 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvllA 58 (490)
-+..+|.-..+.|||..|++++....+..|.-..+..|..+++..++
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ki~ 126 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQ 126 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 35567777899999999999999999999999888888777776554
No 137
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=47.82 E-value=37 Score=28.31 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 13 WLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 13 ~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
+..++...+..+++..|...+.++..++|....
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 108 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALNTVYAD 108 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 344455555556666666666666666665443
No 138
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=47.68 E-value=28 Score=30.58 Aligned_cols=43 Identities=16% Similarity=-0.033 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVA 53 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~ 53 (490)
+-+..++..++..++++.|+.++.++.+++|....+.+.+...
T Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 222 EANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 4455678888899999999999999999999987766665543
No 139
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=47.55 E-value=49 Score=27.86 Aligned_cols=33 Identities=9% Similarity=-0.150 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l 43 (490)
.-+..+|..++..|+++.|+..+.++.++.|..
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 334555666667777777777777777777664
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=46.85 E-value=32 Score=32.06 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
.+..+..+|..++..|+|+.|...+.+|..++|.....
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 40 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY 40 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHH
Confidence 35677888888999999999999999999998875443
No 141
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=46.85 E-value=16 Score=28.33 Aligned_cols=34 Identities=6% Similarity=-0.094 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
-+..+|..++..++++.|+..+.++.++.|....
T Consensus 43 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 43 TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 4566777788999999999999999998776433
No 142
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=46.60 E-value=38 Score=28.43 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 6 NRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 6 NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
+.+.+.-+..+|..++..++++.|...+.++..++|....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 43 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL 43 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchH
Confidence 3456777888888899999999999999999988887543
No 143
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=45.98 E-value=32 Score=25.82 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
-+..+|..++..++++.|..++.++..+.|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 35 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 35 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch
Confidence 456678888888999999999999888887653
No 144
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=45.90 E-value=34 Score=27.37 Aligned_cols=39 Identities=13% Similarity=-0.006 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHH
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQV 49 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~ql 49 (490)
.-++-++..++..|+|..|+.+++++....|.......+
T Consensus 44 rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i 82 (93)
T 3bee_A 44 AALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTI 82 (93)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Confidence 344556677899999999999999999999994444333
No 145
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=45.83 E-value=34 Score=34.60 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
+.-+..+|..++..++|+.|+.++.+|..++|....+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a 353 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKG 353 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Confidence 6777889999999999999999999999999986543
No 146
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=45.46 E-value=85 Score=29.41 Aligned_cols=14 Identities=7% Similarity=-0.061 Sum_probs=9.9
Q ss_pred HHHHHHHHHhCCCC
Q 011245 92 TQYRKLALLLSPER 105 (490)
Q Consensus 92 kaYRkLAl~lHPDK 105 (490)
..|.+.++.+||+.
T Consensus 255 ~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 255 NRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCCC
Confidence 34666678889985
No 147
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=44.84 E-value=1.6e+02 Score=25.77 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
.-++.+|..++..++++.|+..+.++.+++|....+
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~ 77 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 77 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH
Confidence 446667888899999999999999999999997653
No 148
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=44.61 E-value=34 Score=26.88 Aligned_cols=40 Identities=5% Similarity=-0.063 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHH
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLA 51 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLa 51 (490)
-+..+|..++..|+++.|...+.++..+.|....+.....
T Consensus 63 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3445667789999999999999999999998765544433
No 149
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=44.53 E-value=48 Score=29.94 Aligned_cols=46 Identities=7% Similarity=0.047 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 011245 13 WLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTIIA 58 (490)
Q Consensus 13 ~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvllA 58 (490)
+..+|.-..+.+||..|++++....+..|....+..|..+++..++
T Consensus 80 LYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~i~ 125 (144)
T 1y8m_A 80 LYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQ 125 (144)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4556777899999999999999999999999888888777776554
No 150
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=44.33 E-value=89 Score=29.07 Aligned_cols=38 Identities=26% Similarity=0.186 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHHHh------cCCHHHHHHHHHHHHhhCCCC
Q 011245 6 NRAEAERWLSVAEKVLS------SHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 6 NkdEA~R~l~iAek~L~------~~D~~gAkrfa~KAq~L~P~l 43 (490)
+-+||+.+++.|++++. .+|+..|..++.++..++-..
T Consensus 6 ~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 49 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNA 49 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHc
Confidence 34688888888888765 468888888888876655443
No 151
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=43.96 E-value=37 Score=29.74 Aligned_cols=42 Identities=14% Similarity=0.043 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLA 51 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLa 51 (490)
+.-+..+|..++..|+++.|...+.++.+++|.....-..+.
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 129 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344667788889999999999999999999999765444433
No 152
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=43.92 E-value=10 Score=29.37 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=23.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011245 1 MATGFNRAEAERWLSVAEKVLSSHDFQGARSFAIR 35 (490)
Q Consensus 1 M~m~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~K 35 (490)
|.||..|+.+.++|.+|.. |..-|..+++.
T Consensus 15 ~smGfsr~da~~AL~ia~N-----dv~~AtNiLlE 44 (56)
T 2juj_A 15 MSQGYSYQDIQKALVIAQN-----NIEMAKNILRE 44 (56)
T ss_dssp HTTTCCHHHHHHHHHHTTT-----CSHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHhcc-----cHHHHHHHHHH
Confidence 7899999999999987754 77777666553
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=43.66 E-value=36 Score=28.36 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
+.-+..+|..++..++++.|..++.++..++|....
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 79 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 456778888899999999999999999999998643
No 154
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=43.29 E-value=43 Score=29.56 Aligned_cols=30 Identities=13% Similarity=-0.043 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 15 SVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 15 ~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
.+|..++..|+++.|...+.++.+++|...
T Consensus 44 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 44 WLARTQLKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 344445556666666666666666666543
No 155
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=42.35 E-value=11 Score=28.21 Aligned_cols=29 Identities=17% Similarity=0.398 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011245 1 MATGFNRAEAERWLSVAEKVLSSHDFQGARSFAI 34 (490)
Q Consensus 1 M~m~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~ 34 (490)
|.||..|+.++|+|.+|.. |.+-|..+++
T Consensus 12 ~s~Gf~~~~~~rAL~ia~N-----nie~A~nIL~ 40 (46)
T 2oo9_A 12 MSQGYSYQDIQKALVIAQN-----NIEMAKNILR 40 (46)
T ss_dssp HHTTBCHHHHHHHHHHTTT-----CHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHhhc-----cHHHHHHHHH
Confidence 6789999999999988754 7777766654
No 156
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=42.05 E-value=91 Score=34.20 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHH
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPN 47 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~ 47 (490)
.-+..+|..++..|+++.|+..+++|.+++|....+-
T Consensus 44 ~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~ 80 (723)
T 4gyw_A 44 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 80 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3345566777889999999999999999999865443
No 157
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=41.62 E-value=63 Score=27.68 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 6 NRAEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 6 NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
+.+.+.-+..+|..++..++++.|..++.++..++|....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 174 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR 174 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH
Confidence 4456677788899999999999999999999999998643
No 158
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=41.60 E-value=22 Score=28.70 Aligned_cols=35 Identities=6% Similarity=-0.085 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l 43 (490)
.+.-+..+|..++..+++..|...+.++..++|..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 41 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD 41 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC
Confidence 34444555555555555555555555555555543
No 159
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=41.55 E-value=85 Score=28.81 Aligned_cols=118 Identities=10% Similarity=0.015 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHhccc---------ceeccCCCCCCChHhhhcc
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTIIAGES---------IIITSNGNQYHDWYAILQL 80 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvllAae~---------rv~~~~~~~~~D~Y~ILgV 80 (490)
+.-+..+|..++..|+++.|..++.++..++|.....-..++.+ +..... +.... .......|-.|+.
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~ 293 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT--LANGNQSEEAVAAYRRALEL-QPGYIRSRYNLGI 293 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHH
Confidence 45566778888899999999999999999998864432222222 111100 00000 0111223333332
Q ss_pred ccC-CCCHHHHHHHHHHHHHHhCCCCC-C----CcchHHHHHHHHHHHHHhCCchhh
Q 011245 81 ARF-THSIELIATQYRKLALLLSPERN-R----FPFADRSFKLVYDAWSILSNPARK 131 (490)
Q Consensus 81 ~~~-A~d~~eIKkaYRkLAl~lHPDKn-~----~~~AeeaFk~I~eAYevLSDp~kR 131 (490)
--. .-..++-...|++. +.++|+.. + .+.....+..+..+|..|++...-
T Consensus 294 ~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEA-LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHTCHHHHHHHHHHH-HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHCCCHHHHHHHHHHH-HHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 110 01234444455444 44555541 1 123356788888999998887553
No 160
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=41.15 E-value=43 Score=29.37 Aligned_cols=42 Identities=10% Similarity=-0.019 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
+-++..|..++..++++.|+.++.++..++|....+-..++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 45 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAV 45 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 346788999999999999999999999999986544333333
No 161
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=41.10 E-value=43 Score=29.57 Aligned_cols=31 Identities=13% Similarity=-0.097 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYD 40 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~ 40 (490)
+.-+..++..++..|+++.|+..+.+|.++.
T Consensus 118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 118 APLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 4455666667777777777777777777777
No 162
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=40.82 E-value=9.4 Score=29.28 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=23.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011245 1 MATGFNRAEAERWLSVAEKVLSSHDFQGARSFAI 34 (490)
Q Consensus 1 M~m~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~ 34 (490)
|.||..|++|+++|.+| .+|.+-|..+++
T Consensus 17 ~~lGF~r~~ai~AL~~a-----~nnve~Aa~iL~ 45 (53)
T 2d9s_A 17 MSQGYSYQDIQKALVIA-----HNNIEMAKNILR 45 (53)
T ss_dssp HHHTCCHHHHHHHHHHT-----TTCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHh-----cCCHHHHHHHHH
Confidence 67899999999999876 458787777665
No 163
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=40.26 E-value=15 Score=35.99 Aligned_cols=42 Identities=19% Similarity=0.151 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHH
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQV 49 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~ql 49 (490)
+.|+.+..+|..++..|+|+.|..++.++..++|.....-..
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 64 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSN 64 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 467888999999999999999999999999999886543333
No 164
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=40.05 E-value=19 Score=24.54 Aligned_cols=28 Identities=36% Similarity=0.481 Sum_probs=20.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 011245 1 MATGFNRAEAERWLSVAEKVLSSHDFQGARSFA 33 (490)
Q Consensus 1 M~m~~NkdEA~R~l~iAek~L~~~D~~gAkrfa 33 (490)
|.||..+++|.+++..+ .+|++.|..++
T Consensus 12 ~~mGf~~~~a~~AL~~~-----~~n~e~A~~~L 39 (40)
T 1z96_A 12 VSMGFDPLEAAQALDAA-----NGDLDVAASFL 39 (40)
T ss_dssp HHTTCCHHHHHHHHHHT-----TTCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHc-----CCCHHHHHHHH
Confidence 46889999998887643 56888887654
No 165
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=39.91 E-value=53 Score=28.42 Aligned_cols=32 Identities=6% Similarity=-0.001 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDP 41 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P 41 (490)
+..+..+|..++..+++..|..++.++..+.|
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~ 38 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN 38 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccC
Confidence 45677778888888888888888888888887
No 166
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=39.35 E-value=26 Score=26.09 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=24.0
Q ss_pred CCCCC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011245 1 MATGF-NRAEAERWLSVAEKVLSSHDFQGARSFAIR 35 (490)
Q Consensus 1 M~m~~-NkdEA~R~l~iAek~L~~~D~~gAkrfa~K 35 (490)
|+||. +++.++++|..+ .+|.+.|..++..
T Consensus 19 ~~MGF~~~~~~~~AL~~t-----~gnve~Ave~L~~ 49 (53)
T 2knz_A 19 NSMGFINREANLQALIAT-----GGDINAAIERLLG 49 (53)
T ss_dssp HTTTCCCHHHHHHHHHHH-----TSCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence 57999 999999988744 4699999888754
No 167
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=39.10 E-value=64 Score=28.14 Aligned_cols=39 Identities=15% Similarity=-0.120 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
..+.-+..+|..++..++++.|..++.++..++|....+
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 79 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 79 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHH
Confidence 456777788888889999999999999999999885443
No 168
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=38.99 E-value=89 Score=25.90 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYD 40 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~ 40 (490)
..+.-+..+|..++..|+++.|..++.++..+.
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 96 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELL 96 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 345556677777888888888888888888873
No 169
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=38.82 E-value=66 Score=24.01 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
.-+..+|..++..++++.|+.++.++..+.|...
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 69 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 69 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch
Confidence 3345567778889999999999999999988754
No 170
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=38.75 E-value=25 Score=27.29 Aligned_cols=31 Identities=13% Similarity=0.287 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011245 1 MATGFNRAEAERWLSVAEKVLSSHDFQGARSFAIRA 36 (490)
Q Consensus 1 M~m~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~KA 36 (490)
|+||..+++|.++|..+ .+|++.|..++..-
T Consensus 17 ~~MGF~~~~a~~AL~~~-----~~nve~A~e~L~~~ 47 (63)
T 1wji_A 17 TEMGFSKEASRQALMDN-----GNNLEAALNVLLTS 47 (63)
T ss_dssp HTTTCCHHHHHHHHHHT-----TSCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHh-----CCCHHHHHHHHHHC
Confidence 57999999998888754 46899998888653
No 171
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=37.78 E-value=43 Score=29.09 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
+.-+..+|..++..++++.|..++.++..+.|....
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 72 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSAD 72 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHH
Confidence 667777777777888888888888887777776543
No 172
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=37.66 E-value=2e+02 Score=25.51 Aligned_cols=34 Identities=21% Similarity=0.101 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
-+..+|..++..++++.|...+.++..+.|....
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 207 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ 207 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 3455677778899999999999999999987543
No 173
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=37.37 E-value=2.5e+02 Score=25.85 Aligned_cols=36 Identities=19% Similarity=-0.003 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
+..++.+|..++..|+++.|..++.++..++|....
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 100 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAE 100 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHH
Confidence 445889999999999999999999999999998643
No 174
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=37.08 E-value=75 Score=31.85 Aligned_cols=75 Identities=9% Similarity=-0.086 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH-------HhcccceeccCCCCCCChHhhhccccCCCC
Q 011245 14 LSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTI-------IAGESIIITSNGNQYHDWYAILQLARFTHS 86 (490)
Q Consensus 14 l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvl-------lAae~rv~~~~~~~~~D~Y~ILgV~~~A~d 86 (490)
...++..+..|++..|...+.++...+|..|.+...+-.+-.. +..-.+. ..-+.+=|||+|.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~-------r~~L~~eLG~~P~--- 244 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV-------KTTLADDLGIDPG--- 244 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH-------HHHHHHHHSCCCC---
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHHHHHHhCCCCC---
Confidence 3466778899999999999999999999988644333222110 0000010 1223556899883
Q ss_pred HHHHHHHHHHHHH
Q 011245 87 IELIATQYRKLAL 99 (490)
Q Consensus 87 ~~eIKkaYRkLAl 99 (490)
.+++..|+++..
T Consensus 245 -~~l~~l~~~il~ 256 (388)
T 2ff4_A 245 -PTLRALNERILR 256 (388)
T ss_dssp -HHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHc
Confidence 478888888653
No 175
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=36.65 E-value=44 Score=26.74 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011245 1 MATGFNRAEAERWLSVAEKVLSSHDFQGARSFAIRAREY 39 (490)
Q Consensus 1 M~m~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L 39 (490)
|.+...-+.|..++..|...=..++|..|..+|..|.++
T Consensus 4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444445678999999999888999999999999887653
No 176
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.46 E-value=12 Score=27.54 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=23.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011245 1 MATGFNRAEAERWLSVAEKVLSSHDFQGARSFAIR 35 (490)
Q Consensus 1 M~m~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~K 35 (490)
|+||.++++|.++|.. ..+|.+.|..++..
T Consensus 16 ~~MGF~~~~a~~AL~~-----~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 16 MSMGYERERVVAALRA-----SYNNPHRAVEYLLT 45 (49)
T ss_dssp HHTTCCHHHHHHHHHT-----TTSCSHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHH-----hCCCHHHHHHHHHh
Confidence 5699999999999874 34688888887653
No 177
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=36.29 E-value=74 Score=27.70 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
-+..+|..++..++++.|..++.++..++|....
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 112 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 112 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCccccH
Confidence 3455667777888888888888888888887543
No 178
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=34.62 E-value=70 Score=30.44 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
..+..++.+|..++..|++..|..++.++..++|...
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 60 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY 60 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccH
Confidence 4666777777777777888888887777777777653
No 179
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=34.11 E-value=56 Score=30.26 Aligned_cols=33 Identities=6% Similarity=0.140 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l 43 (490)
.-+..+|..++..++++.|..++.++..+.+..
T Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence 344555566666777777777777776666554
No 180
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=34.04 E-value=15 Score=26.71 Aligned_cols=32 Identities=22% Similarity=0.524 Sum_probs=22.5
Q ss_pred eCcchhhhhcchhhhc-----CceeeccccCCceeee
Q 011245 239 ACPYCYILYEYPKAYE-----DCTLKCQNCKRAFHGV 270 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~Yl-----N~~LrCqnC~k~F~A~ 270 (490)
.|+.|...|....... .....|..|++.|.-.
T Consensus 16 ~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 16 KCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp ECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEEC
T ss_pred cCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccC
Confidence 7999987765543321 3567899999999753
No 181
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=33.97 E-value=1e+02 Score=26.59 Aligned_cols=27 Identities=7% Similarity=-0.048 Sum_probs=15.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 011245 16 VAEKVLSSHDFQGARSFAIRAREYDPS 42 (490)
Q Consensus 16 iAek~L~~~D~~gAkrfa~KAq~L~P~ 42 (490)
+|..++..++++.|..++.+|..+.|.
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~al~~~p~ 74 (228)
T 4i17_A 48 CGVCADNIKKYKEAADYFDIAIKKNYN 74 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCcc
Confidence 455555555555555555555555555
No 182
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=33.69 E-value=89 Score=24.95 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
+.-+..+|..++..++++.|..++.++..++|....+
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 112 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHH
Confidence 4556778888999999999999999999998876543
No 183
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=33.47 E-value=2.1e+02 Score=23.93 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAR 37 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq 37 (490)
.++.+...+|..++..++++.|...+.++.
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~ 33 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ 33 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 478899999999999999999999999984
No 184
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=33.32 E-value=77 Score=25.48 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
.-+.+.|.+++.|+++.|...+-+|...||....
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 3477899999999999999999999999999754
No 185
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=33.27 E-value=1.2e+02 Score=30.60 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPS 42 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~ 42 (490)
.-+..+|..++..++++.|...+.+|.++.|.
T Consensus 138 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 169 (474)
T 4abn_A 138 EAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN 169 (474)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34555666666777777777777777777776
No 186
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=32.17 E-value=56 Score=28.66 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREY 39 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L 39 (490)
|.|.+.+..|+..+..+|+..+...+.||+.+
T Consensus 34 dgal~~l~~A~~ai~~~d~~~k~~~i~KA~~I 65 (131)
T 3iqc_A 34 EGILRFSSQAKRCIENEDIEKKIYYINRVTDI 65 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67999999999999999999999999998853
No 187
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=32.04 E-value=96 Score=28.76 Aligned_cols=33 Identities=9% Similarity=-0.083 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l 43 (490)
.-++.+|..++..|+++.|...+.++.+++|..
T Consensus 220 ~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 220 ALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 334555666666777777777777777777665
No 188
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=31.85 E-value=69 Score=28.58 Aligned_cols=35 Identities=14% Similarity=0.003 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
+..++.+|..++..++++.|..++.++...+|...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 55 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPERE 55 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 34456667777777777777777777777776643
No 189
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=31.78 E-value=88 Score=26.62 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l 43 (490)
.-+..+|..++..++++.|..++.++..++|..
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 90 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELDSSA 90 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344445555555555555555555555555543
No 190
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=31.41 E-value=84 Score=32.04 Aligned_cols=43 Identities=9% Similarity=0.018 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVA 53 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~ 53 (490)
.-+..+|..++..++++.|...+++|.+++|....+...+..+
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445566777788888888888888888888866555555444
No 191
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=31.21 E-value=42 Score=30.08 Aligned_cols=43 Identities=7% Similarity=0.019 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
+.-+..+|..++..|+++.|..++.++..+.|....+-..++.
T Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~ 278 (330)
T 3hym_B 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGY 278 (330)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 3467778888999999999999999999999886554433333
No 192
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=31.18 E-value=37 Score=29.34 Aligned_cols=32 Identities=16% Similarity=0.042 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011245 7 RAEAERWLSVAEKVLSSHDFQGARSFAIRARE 38 (490)
Q Consensus 7 kdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~ 38 (490)
-+.|..++..|...=..++|..|+.+|..|.+
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 67888888888888889999999999998864
No 193
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=31.00 E-value=17 Score=33.28 Aligned_cols=26 Identities=19% Similarity=0.556 Sum_probs=19.7
Q ss_pred CceeeeCcchhhhhcchhhhcCceeeccccCC
Q 011245 234 PRFWTACPYCYILYEYPKAYEDCTLKCQNCKR 265 (490)
Q Consensus 234 ~TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k 265 (490)
.++|. |+.|...|+ . .---.||.|+-
T Consensus 136 ~~~~~-C~~CG~i~~--~---~~p~~CP~Cg~ 161 (170)
T 3pwf_A 136 KKVYI-CPICGYTAV--D---EAPEYCPVCGA 161 (170)
T ss_dssp SCEEE-CTTTCCEEE--S---CCCSBCTTTCC
T ss_pred CCeeE-eCCCCCeeC--C---CCCCCCCCCCC
Confidence 48995 999999998 1 22238999984
No 194
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=30.88 E-value=1e+02 Score=27.07 Aligned_cols=31 Identities=13% Similarity=-0.004 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhcCCH-HHH---HHHHHHHHh
Q 011245 8 AEAERWLSVAEKVLSSHDF-QGA---RSFAIRARE 38 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~-~gA---krfa~KAq~ 38 (490)
|.|.+.+..|...+..+|+ ..+ -..+.||+.
T Consensus 27 dgai~~l~~A~~ai~~~d~~~~k~~~~~~i~KA~~ 61 (130)
T 1orj_A 27 DKAIECLERAIEIYDQVNELEKRKEFVENIDRVYD 61 (130)
T ss_dssp HHHHHHHHHHHHTGGGTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999 887 566777664
No 195
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=30.70 E-value=1.4e+02 Score=31.74 Aligned_cols=36 Identities=17% Similarity=-0.172 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
++-++.+|..++..|+++.|...+.+|.+++|....
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 468 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR 468 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH
Confidence 444555566666666666666666666666665433
No 196
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=30.54 E-value=1.3e+02 Score=27.61 Aligned_cols=36 Identities=8% Similarity=-0.108 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
.+.-+..++..+...|+++.|+.++.+|..+++...
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g 111 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG 111 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 355556666667777888888888888887776543
No 197
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=30.42 E-value=63 Score=25.07 Aligned_cols=41 Identities=7% Similarity=0.083 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHH
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQV 49 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~ql 49 (490)
.+.-+..+|..++..++++.|..++.++..+.+.......+
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34566778888889999999999999999888777654433
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=30.24 E-value=30 Score=31.26 Aligned_cols=40 Identities=18% Similarity=0.013 Sum_probs=34.1
Q ss_pred CHHHHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 6 NRAEAERW----LSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 6 NkdEA~R~----l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
+-+.+.-| ..++..+...++++.|+..+.+|.++.|...+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 44566667 88889999999999999999999999999654
No 199
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=30.03 E-value=81 Score=28.16 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
.-++..|+.++..|+|..|.+++.++...+|....
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 57 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS 57 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh
Confidence 34677888899999999999999999999988543
No 200
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=29.77 E-value=13 Score=37.11 Aligned_cols=35 Identities=23% Similarity=0.526 Sum_probs=23.5
Q ss_pred CCceeeeCcchhhhhcchhhhcCceeeccccCCcee
Q 011245 233 GPRFWTACPYCYILYEYPKAYEDCTLKCQNCKRAFH 268 (490)
Q Consensus 233 ~~TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~ 268 (490)
+...|+-|+.|... -|........-.||.|+..|.
T Consensus 20 ~~~l~~kc~~~~~~-~~~~~l~~~~~v~~~~~~~~r 54 (304)
T 2f9y_B 20 PEGVWTKCDSCGQV-LYRAELERNLEVCPKCDHHMR 54 (304)
T ss_dssp ---CEECCTTTCCC-EETTHHHHTTTBCTTTCCBCC
T ss_pred CHHHHHhhhhccch-hhHHHHHHHhCCCCCCCCCCC
Confidence 35789999999873 344445555678999987653
No 201
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=29.48 E-value=1.4e+02 Score=24.75 Aligned_cols=29 Identities=10% Similarity=-0.127 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 011245 10 AERWLSVAEKVLSS-HDFQGARSFAIRARE 38 (490)
Q Consensus 10 A~R~l~iAek~L~~-~D~~gAkrfa~KAq~ 38 (490)
+.-+..+|..++.. ++++.|..++.++..
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 34556677777777 788888888877777
No 202
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=29.48 E-value=1.2e+02 Score=27.86 Aligned_cols=34 Identities=6% Similarity=0.001 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 11 ERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 11 ~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
.-+..++..++..|+++.|..++.++..+.|...
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR 192 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 3455667777888999999999999999888754
No 203
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=29.30 E-value=44 Score=29.31 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHH-------HHhcCCHHHHHHHHHHHHh
Q 011245 5 FNRAEAERWLSVAEK-------VLSSHDFQGARSFAIRARE 38 (490)
Q Consensus 5 ~NkdEA~R~l~iAek-------~L~~~D~~gAkrfa~KAq~ 38 (490)
.|++|+++|+..|+. +|..|+|.-|--++++|.+
T Consensus 4 ~~~ee~~~wl~~A~~dl~~A~~~~~~g~y~~a~F~aqQA~E 44 (141)
T 3o10_A 4 GNPVEARRWLRQARANFSAARNDLHKNANEWVCFKCYLSTK 44 (141)
T ss_dssp CCHHHHHHHHHHHHHHHHHHGGGTTTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhhhhHHhhHHhhCccceEeeehhHHHH
Confidence 489999999998865 3446777776666666553
No 204
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=29.02 E-value=98 Score=26.74 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRARE 38 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~ 38 (490)
+.-+..+|..++..++++.|++++.++..
T Consensus 105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34455666667777777777777777766
No 205
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=29.02 E-value=23 Score=24.38 Aligned_cols=31 Identities=23% Similarity=0.526 Sum_probs=21.2
Q ss_pred eCcchhhhhcchhhhc--------CceeeccccCCceee
Q 011245 239 ACPYCYILYEYPKAYE--------DCTLKCQNCKRAFHG 269 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~Yl--------N~~LrCqnC~k~F~A 269 (490)
.|+.|...|.....+. .....|..|.+.|..
T Consensus 6 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp BCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred cCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCC
Confidence 5888877776543332 345789999999863
No 206
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=28.99 E-value=1.1e+02 Score=26.10 Aligned_cols=32 Identities=6% Similarity=0.050 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 13 WLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 13 ~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
+..+|..++..++++.|..++.++..++|...
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 125 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMENG 125 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 34455556666677777777777766666543
No 207
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=28.98 E-value=66 Score=28.73 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREY 39 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L 39 (490)
|.|++.+..|+..+..+|+..+-..+.||+.+
T Consensus 31 dgal~~l~~A~~aie~~d~~~k~~~i~KA~~I 62 (145)
T 1vh6_A 31 NGCLKFIRLAAQAIENDDMERKNENLIKAQNI 62 (145)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999864
No 208
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=28.89 E-value=2.6e+02 Score=26.73 Aligned_cols=47 Identities=19% Similarity=0.005 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTII 57 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvll 57 (490)
..+.-+..+|..++..+++..|..++.++..+.|. ...+..+..++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~l~~~~~ 281 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR---VNSYIYMALIMA 281 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc---HHHHHHHHHHHH
Confidence 34555666777788999999999999999999998 333444444443
No 209
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=28.83 E-value=12 Score=33.49 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=19.1
Q ss_pred CCceeeeCcchhhhhcchhhhcCc
Q 011245 233 GPRFWTACPYCYILYEYPKAYEDC 256 (490)
Q Consensus 233 ~~TFWT~Cp~C~~~YEY~R~YlN~ 256 (490)
..=||.-||||+..+..+..++..
T Consensus 27 vef~d~~Cp~C~~~~~~~~~~~~~ 50 (185)
T 3feu_A 27 TEVFALSCGHCRNMENFLPVISQE 50 (185)
T ss_dssp EEEECTTCHHHHHHGGGHHHHHHH
T ss_pred EEEECCCChhHHHhhHHHHHHHHH
Confidence 356889999999999887776553
No 210
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.83 E-value=21 Score=26.23 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=22.1
Q ss_pred eCcchhhhhcchhhhc--------CceeeccccCCceee
Q 011245 239 ACPYCYILYEYPKAYE--------DCTLKCQNCKRAFHG 269 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~Yl--------N~~LrCqnC~k~F~A 269 (490)
.|+.|...|.....+. .....|..|.+.|..
T Consensus 16 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 16 GCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp ECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESS
T ss_pred cCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCC
Confidence 7999987775543322 345789999999963
No 211
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=28.62 E-value=1.4e+02 Score=28.24 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
..|.-+..+|..++..+++..|..++.+|..+++....
T Consensus 141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 46677778888889999999999999999999888654
No 212
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=28.62 E-value=85 Score=29.09 Aligned_cols=38 Identities=21% Similarity=0.010 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHH
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPN 47 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~ 47 (490)
+.-+..+|..++..++++.|..++.+|.+++|....+-
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 75 (281)
T 2c2l_A 38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 34455677788889999999999999999998865433
No 213
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=28.51 E-value=4e+02 Score=26.92 Aligned_cols=122 Identities=15% Similarity=0.053 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh----cc---cceeccCCCCCCChHhhhccc
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTIIA----GE---SIIITSNGNQYHDWYAILQLA 81 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvllA----ae---~rv~~~~~~~~~D~Y~ILgV~ 81 (490)
.+.-+..+|..++..++++.|..++.+|.+++|.....-..++.+-.... +. .+.... .....+.|-.|+.-
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~ 100 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-APEHPGIALWLGHA 100 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHH
Confidence 45667788888999999999999999999999986544333333211100 00 000000 01122233333321
Q ss_pred c-CCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHh---CCch-hhHhhhhhc
Q 011245 82 R-FTHSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSIL---SNPA-RKIMYDTDL 138 (490)
Q Consensus 82 ~-~A~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevL---SDp~-kRa~YD~~~ 138 (490)
- ..-..++-...|++ ++.++|+. ..++..+..+|..+ .+.. ....|...+
T Consensus 101 ~~~~g~~~~A~~~~~~-al~~~p~~------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 101 LEDAGQAEAAAAAYTR-AHQLLPEE------PYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHTTCHHHHHHHHHH-HHHHCTTC------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH-HHHhCCCC------HHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 1 11134444455554 45566653 35677788888888 5433 334444443
No 214
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=28.51 E-value=32 Score=30.49 Aligned_cols=33 Identities=6% Similarity=-0.041 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDP 41 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P 41 (490)
.+.-+..++..++..++++.|..++.++..+.+
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555554443
No 215
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=28.47 E-value=3.3e+02 Score=28.28 Aligned_cols=34 Identities=12% Similarity=0.021 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPS 42 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~ 42 (490)
++..+++.|+++...|+|+.|..+++++..+.-.
T Consensus 308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~ 341 (490)
T 3n71_A 308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEP 341 (490)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4566778888888999999999999998876544
No 216
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=28.07 E-value=1e+02 Score=31.00 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
.+.-+..+|..++..++++.|...+.+|.+++|....
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 293 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4455666777777788888888888888888888653
No 217
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=28.04 E-value=82 Score=28.91 Aligned_cols=32 Identities=19% Similarity=0.096 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 13 WLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 13 ~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
++.+|..++..+++..|..++.++..++|...
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 98 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM 98 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 55666666667777777777777766666643
No 218
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=27.95 E-value=62 Score=29.21 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 011245 24 HDFQGARSFAIRAREYDPSFEAPNQVLAVAD 54 (490)
Q Consensus 24 ~D~~gAkrfa~KAq~L~P~le~~~qlLav~d 54 (490)
++|+.|..++++|.++.|........+.+++
T Consensus 105 g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 105 HNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5899999999999999999876666665554
No 219
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=27.91 E-value=25 Score=24.22 Aligned_cols=30 Identities=23% Similarity=0.531 Sum_probs=19.4
Q ss_pred eCcchhhhhcchhhhc--------CceeeccccCCcee
Q 011245 239 ACPYCYILYEYPKAYE--------DCTLKCQNCKRAFH 268 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~Yl--------N~~LrCqnC~k~F~ 268 (490)
.|+.|...|.....+. .....|..|.+.|.
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp BCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEES
T ss_pred cCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhc
Confidence 4777776665433322 23477999999986
No 220
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.82 E-value=22 Score=27.31 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011245 1 MATGFNRAEAERWLSVAEKVLSSHDFQGARSFAIR 35 (490)
Q Consensus 1 M~m~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~K 35 (490)
|+||..+++|.++|..+ .++++.|..++..
T Consensus 17 ~~MGF~~~~a~~AL~~t-----~~nve~A~e~L~~ 46 (63)
T 2dak_A 17 VSMGFSRDQALKALRAT-----NNSLERAVDWIFS 46 (63)
T ss_dssp HHHTCCHHHHHHHHHHT-----TSCSHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHc-----CCCHHHHHHHHHh
Confidence 46888888888888754 4578888887765
No 221
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=27.54 E-value=48 Score=36.07 Aligned_cols=49 Identities=20% Similarity=0.153 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVADTIIA 58 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~dvllA 58 (490)
+.+++..|++.+..|||.=|..++..+...+|....+.++++-+-..+.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999998877777655444343
No 222
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=26.60 E-value=4.9e+02 Score=26.22 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHH
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVL 50 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlL 50 (490)
.+.-+..+|..++..++++.|...+++|.+++|.....-..+
T Consensus 56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 97 (568)
T 2vsy_A 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWL 97 (568)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 355566777777788888888888888888888765443333
No 223
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=26.45 E-value=67 Score=30.92 Aligned_cols=12 Identities=25% Similarity=0.111 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 011245 8 AEAERWLSVAEK 19 (490)
Q Consensus 8 dEA~R~l~iAek 19 (490)
++|+.+...|..
T Consensus 196 ~~A~~~y~~Al~ 207 (338)
T 2if4_A 196 EEAMQQYEMAIA 207 (338)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555443
No 224
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=26.17 E-value=51 Score=31.04 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 15 SVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 15 ~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
++|..++..|+++.|...+.++.+++|....
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 34 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTG 34 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 4556666666666666666666666666543
No 225
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=25.88 E-value=26 Score=24.45 Aligned_cols=30 Identities=23% Similarity=0.597 Sum_probs=19.4
Q ss_pred eCcchhhhhcchhhhc--------CceeeccccCCcee
Q 011245 239 ACPYCYILYEYPKAYE--------DCTLKCQNCKRAFH 268 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~Yl--------N~~LrCqnC~k~F~ 268 (490)
.|+.|...|.....+. .....|+.|.+.|.
T Consensus 4 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41 (60)
T ss_dssp CCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEES
T ss_pred cCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccC
Confidence 5777876665433322 23477999999886
No 226
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.64 E-value=71 Score=24.62 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=24.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011245 1 MATGFNRAEAERWLSVAEKVLSSHDFQGARSFAIR 35 (490)
Q Consensus 1 M~m~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~K 35 (490)
|.||..++.|+++|..+ ..++.+.|..++..
T Consensus 17 ~~MGF~~~~a~~AL~~t----~~~nve~A~ewLl~ 47 (64)
T 1whc_A 17 IEMGFPRGRAEKALALT----GNQGIEAAMDWLME 47 (64)
T ss_dssp HTTTCCHHHHHHHHHHH----TSCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHh----cCCCHHHHHHHHHh
Confidence 57999999999988733 24789999988875
No 227
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.44 E-value=26 Score=25.46 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=21.4
Q ss_pred eCcchhhhhcchhhhc--------CceeeccccCCceee
Q 011245 239 ACPYCYILYEYPKAYE--------DCTLKCQNCKRAFHG 269 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~Yl--------N~~LrCqnC~k~F~A 269 (490)
.|+.|...|.....+. .....|..|.+.|.-
T Consensus 11 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~ 49 (70)
T 1x5w_A 11 KCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQ 49 (70)
T ss_dssp ECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESS
T ss_pred ECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCC
Confidence 7889987765433322 234789999999963
No 228
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.29 E-value=26 Score=25.80 Aligned_cols=31 Identities=19% Similarity=0.599 Sum_probs=22.1
Q ss_pred eCcchhhhhcchhhhc--------CceeeccccCCceee
Q 011245 239 ACPYCYILYEYPKAYE--------DCTLKCQNCKRAFHG 269 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~Yl--------N~~LrCqnC~k~F~A 269 (490)
.|+.|...|.....+. .....|..|.+.|.-
T Consensus 19 ~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred ECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 7999988776544332 234789999999963
No 229
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.15 E-value=25 Score=28.17 Aligned_cols=31 Identities=26% Similarity=0.556 Sum_probs=23.0
Q ss_pred eCcchhhhhcchhhhc--------CceeeccccCCceee
Q 011245 239 ACPYCYILYEYPKAYE--------DCTLKCQNCKRAFHG 269 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~Yl--------N~~LrCqnC~k~F~A 269 (490)
+|+.|...|-....+. .....|..|.+.|.-
T Consensus 30 ~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp ECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred ECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 8999988877654433 335679999999963
No 230
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=24.76 E-value=23 Score=28.55 Aligned_cols=28 Identities=21% Similarity=0.661 Sum_probs=19.8
Q ss_pred CcchhhhhcchhhhcCceeeccccCCceee
Q 011245 240 CPYCYILYEYPKAYEDCTLKCQNCKRAFHG 269 (490)
Q Consensus 240 Cp~C~~~YEY~R~YlN~~LrCqnC~k~F~A 269 (490)
||.|...+..... ...+.|+.|+..|-.
T Consensus 28 CP~C~~~~~~~~~--~~~v~C~~C~~~FC~ 55 (86)
T 2ct7_A 28 CAQCSFGFIYERE--QLEATCPQCHQTFCV 55 (86)
T ss_dssp CSSSCCCEECCCS--CSCEECTTTCCEECS
T ss_pred CcCCCchheecCC--CCceEeCCCCCcccc
Confidence 8889886654432 455889889888863
No 231
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.45 E-value=30 Score=28.55 Aligned_cols=33 Identities=24% Similarity=0.145 Sum_probs=25.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011245 1 MATGFNRAEAERWLSVAEKVLSSHDFQGARSFAIRARE 38 (490)
Q Consensus 1 M~m~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~ 38 (490)
|+||..++.|+++|.. ..+|.+.|..++..-+.
T Consensus 37 v~MGF~~~~A~~AL~~-----t~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 37 VYMGFDTVVAEAALRV-----FGGNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHSCCHHHHHHHHHH-----TTTCHHHHHHHHHHHTS
T ss_pred HHcCCCHHHHHHHHHH-----cCCCHHHHHHHHHhCCC
Confidence 5689999999998874 35789999888876443
No 232
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=24.33 E-value=40 Score=24.96 Aligned_cols=29 Identities=28% Similarity=0.286 Sum_probs=21.9
Q ss_pred CCCCC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011245 1 MATGF-NRAEAERWLSVAEKVLSSHDFQGARSFAI 34 (490)
Q Consensus 1 M~m~~-NkdEA~R~l~iAek~L~~~D~~gAkrfa~ 34 (490)
|+||. +++.++++|..+ .+|.+.|..++.
T Consensus 20 ~~MGF~~~~~~~~AL~~t-----~gn~e~A~e~L~ 49 (52)
T 2jy5_A 20 SAMGFLNREANLQALIAT-----GGDINAAIERLL 49 (52)
T ss_dssp HHTTCCCHHHHHHHHHHH-----TTCHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHh-----CCCHHHHHHHHH
Confidence 46899 899888888743 468888887753
No 233
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=24.32 E-value=95 Score=23.17 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhhh
Q 011245 90 IATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDTD 137 (490)
Q Consensus 90 IKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~~ 137 (490)
-.+.+|.....-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 13 f~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~~A 56 (71)
T 4a3n_A 13 WAKDERKRLAQQNPDLH----NAELSKMLGKSWKALTLAEKRPFVEEA 56 (71)
T ss_dssp HHHHHHHHHHTTCTTSC----HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34566777777888753 567899999999999988776655543
No 234
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=23.71 E-value=4.3e+02 Score=25.15 Aligned_cols=32 Identities=19% Similarity=0.100 Sum_probs=24.2
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 011245 21 LSSHDFQGARSFAIRAREYDPSFEAPNQVLAV 52 (490)
Q Consensus 21 L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav 52 (490)
+..++|+.|+.++++|.+++|....+...+++
T Consensus 149 ~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAI 180 (472)
T ss_dssp HCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34568999999999999999997654433333
No 235
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=23.50 E-value=69 Score=27.02 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFE 44 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le 44 (490)
.-+.+.|.+++.|+++.|...+-+|...||...
T Consensus 22 ~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 22 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 357889999999999999999999999999864
No 236
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=23.43 E-value=1.4e+02 Score=28.94 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAPNQVLAVAD 54 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~~qlLav~d 54 (490)
-+..+|..++..|+++.|..++.++..+.|......+.+....
T Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 506 (537)
T 3fp2_A 464 AKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAE 506 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHhHHH
Confidence 3556777788899999999999999999998776655554433
No 237
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=23.42 E-value=14 Score=25.93 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=19.1
Q ss_pred eCcchhhhhcchhhhc---------CceeeccccCCcee
Q 011245 239 ACPYCYILYEYPKAYE---------DCTLKCQNCKRAFH 268 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~Yl---------N~~LrCqnC~k~F~ 268 (490)
.|+.|...|.....+. .....|..|.+.|.
T Consensus 14 ~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp ECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred ECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 6888877664432222 12357999999884
No 238
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=23.37 E-value=46 Score=26.81 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011245 7 RAEAERWLSVAEKVLSSHDFQGARSFAIRARE 38 (490)
Q Consensus 7 kdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~ 38 (490)
.+.|..++..|...=..|+|..|..++..|..
T Consensus 8 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 8 EDMARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 57889999999999999999999998887654
No 239
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=23.32 E-value=1.7e+02 Score=27.04 Aligned_cols=38 Identities=13% Similarity=-0.040 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchH
Q 011245 9 EAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEAP 46 (490)
Q Consensus 9 EA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~~ 46 (490)
.+.-+..++..++..|+++.|..++.++..++|....+
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 249 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL 249 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 35567788888899999999999999999999886543
No 240
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.15 E-value=1.8e+02 Score=27.47 Aligned_cols=114 Identities=8% Similarity=-0.000 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch----HHHHHHHHHHHHhcccceeccCCCCCCChH-hhhccccCC
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA----PNQVLAVADTIIAGESIIITSNGNQYHDWY-AILQLARFT 84 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~----~~qlLav~dvllAae~rv~~~~~~~~~D~Y-~ILgV~~~A 84 (490)
+.-...+|.-++..|+|..|..++.++......... ++.++....++.+...- .....+| .+|.+....
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNL------AKSKASLTAARTAANSI 208 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHHhhcC
Confidence 334456788889999999999999998876555332 22222222232221100 0011122 233333322
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCch
Q 011245 85 HSIELIATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPA 129 (490)
Q Consensus 85 ~d~~eIKkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~ 129 (490)
.+...+...++.+.-.+|-.......|...|...-+.|..+.+..
T Consensus 209 ~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~ 253 (434)
T 4b4t_Q 209 YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHN 253 (434)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Confidence 123456666666666677655545566666666666666666543
No 241
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=22.86 E-value=21 Score=28.54 Aligned_cols=29 Identities=14% Similarity=0.448 Sum_probs=23.0
Q ss_pred ceeeeCcchhhhhcchhhhcCceeeccccCCc
Q 011245 235 RFWTACPYCYILYEYPKAYEDCTLKCQNCKRA 266 (490)
Q Consensus 235 TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~ 266 (490)
...-+|+.|...++-. ..-.++|+.|+-.
T Consensus 26 ~v~Y~C~~CG~~~e~~---~~d~irCp~CG~R 54 (70)
T 1twf_L 26 TLKYICAECSSKLSLS---RTDAVRCKDCGHR 54 (70)
T ss_dssp CCCEECSSSCCEECCC---TTSTTCCSSSCCC
T ss_pred eEEEECCCCCCcceeC---CCCCccCCCCCce
Confidence 4555899999998887 3467899999873
No 242
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=22.65 E-value=72 Score=33.22 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 011245 7 RAEAERWLSVAEKVLSSHDFQGARSFAIRAREYD 40 (490)
Q Consensus 7 kdEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~ 40 (490)
+.++.+++..|..++..||+.+|.+++..|.++-
T Consensus 379 ~~~~a~~~~~a~~~~~~gd~~~A~~~L~~A~~~~ 412 (464)
T 4fx5_A 379 QAEMAAAIQEGLDAQAAGDLDTATARLGRAMDLA 412 (464)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999988764
No 243
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.47 E-value=36 Score=27.12 Aligned_cols=30 Identities=23% Similarity=0.635 Sum_probs=15.8
Q ss_pred eCcchhhhhcch--hhhcCce--eeccccCCcee
Q 011245 239 ACPYCYILYEYP--KAYEDCT--LKCQNCKRAFH 268 (490)
Q Consensus 239 ~Cp~C~~~YEY~--R~YlN~~--LrCqnC~k~F~ 268 (490)
.|+.|...|... ..|+... -.||.|+..|.
T Consensus 30 ~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 30 SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 455555554432 3344444 56666666655
No 244
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=21.96 E-value=18 Score=31.82 Aligned_cols=21 Identities=14% Similarity=0.062 Sum_probs=15.5
Q ss_pred ceeeeCcchhhhhcchhhhcC
Q 011245 235 RFWTACPYCYILYEYPKAYED 255 (490)
Q Consensus 235 TFWT~Cp~C~~~YEY~R~YlN 255 (490)
=|+..||+|+..+.-+..++.
T Consensus 29 f~d~~Cp~C~~~~~~l~~l~~ 49 (195)
T 2znm_A 29 FFGYFCVHCHHFDPLLLKLGK 49 (195)
T ss_dssp EECTTSCCTTSSCHHHHHHHH
T ss_pred EECCCChhHHHHhHHHHHHHH
Confidence 356789999998877666543
No 245
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=21.56 E-value=21 Score=32.73 Aligned_cols=20 Identities=35% Similarity=0.713 Sum_probs=16.5
Q ss_pred eeeeCcchhhhhcchhhhcC
Q 011245 236 FWTACPYCYILYEYPKAYED 255 (490)
Q Consensus 236 FWT~Cp~C~~~YEY~R~YlN 255 (490)
|+..||||+..+.....|..
T Consensus 94 ~d~~Cp~C~~~~~~l~~~~~ 113 (211)
T 1t3b_A 94 MDITCHYCHLLHQQLKEYND 113 (211)
T ss_dssp ECTTCHHHHHHHTTHHHHHH
T ss_pred ECCCCHhHHHHHHHHHHHHh
Confidence 45689999999999988653
No 246
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=21.52 E-value=24 Score=34.87 Aligned_cols=34 Identities=26% Similarity=0.554 Sum_probs=23.8
Q ss_pred CCceeeeCcchhhhhcchhhhcCceeeccccCCce
Q 011245 233 GPRFWTACPYCYILYEYPKAYEDCTLKCQNCKRAF 267 (490)
Q Consensus 233 ~~TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~F 267 (490)
+...|+-|+.|... -|........-.||.|+..+
T Consensus 26 ~~~l~~kc~~~~~~-~y~~~l~~~~~v~p~~~~~~ 59 (285)
T 2f9i_B 26 PAGIMTKCPKCKKI-MYTKELAENLNVCFNCDHHI 59 (285)
T ss_dssp CCSSEEECTTTCCE-EEHHHHHHTTTBCTTTCCBC
T ss_pred ChHHHHhhHhhCCc-cchhhhHHhcCcCCCCCCCC
Confidence 35789999999873 34443444556899998754
No 247
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=21.43 E-value=28 Score=32.60 Aligned_cols=26 Identities=31% Similarity=0.642 Sum_probs=19.7
Q ss_pred ceeeeCcchhhhhcchhhhcCceeeccccCCc
Q 011245 235 RFWTACPYCYILYEYPKAYEDCTLKCQNCKRA 266 (490)
Q Consensus 235 TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~ 266 (490)
.+| +|+.|-+.|+- .--..||.|+-+
T Consensus 170 ~~~-~C~~CG~i~~g-----~~p~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFH-LCPICGYIHKG-----EDFEKCPICFRP 195 (202)
T ss_dssp CEE-ECSSSCCEEES-----SCCSBCTTTCCB
T ss_pred cEE-EECCCCCEEcC-----cCCCCCCCCCCC
Confidence 678 89999998873 233689999753
No 248
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=21.41 E-value=1.6e+02 Score=29.93 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l 43 (490)
|..+..+|..++..++++.|...+.+|.+++|..
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~ 39 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN 39 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 3333444444445555555555555555555443
No 249
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.07 E-value=24 Score=26.67 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=13.1
Q ss_pred hhcCceeeccccCCceee
Q 011245 252 AYEDCTLKCQNCKRAFHG 269 (490)
Q Consensus 252 ~YlN~~LrCqnC~k~F~A 269 (490)
.|+.....||.|++.|..
T Consensus 47 ~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 47 KWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp HHHHHCSBCTTTCCBCSS
T ss_pred HHHHcCCcCCCcCccccc
Confidence 344455689999998874
No 250
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=21.04 E-value=2.3e+02 Score=26.78 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 011245 8 AEAERWLSVAEKVLSSHDFQGARSFAIRAREYDPSFEA 45 (490)
Q Consensus 8 dEA~R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~le~ 45 (490)
..|.-+..+|...+..+++..|..++.+|..+++....
T Consensus 139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 176 (378)
T 3q15_A 139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL 176 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC
Confidence 45566667777888899999999999999999887543
No 251
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.00 E-value=4e+02 Score=25.02 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 011245 12 RWLSVAEKVLSSHDFQGARSFAIRAREYDPSF 43 (490)
Q Consensus 12 R~l~iAek~L~~~D~~gAkrfa~KAq~L~P~l 43 (490)
-.++.|++++..|||..|.+.+.++....+..
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~ 37 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQ 37 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCccc
Confidence 35788999999999999999999999998874
No 252
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=20.78 E-value=19 Score=32.33 Aligned_cols=22 Identities=23% Similarity=0.230 Sum_probs=17.2
Q ss_pred ceeeeCcchhhhhcchhhhcCc
Q 011245 235 RFWTACPYCYILYEYPKAYEDC 256 (490)
Q Consensus 235 TFWT~Cp~C~~~YEY~R~YlN~ 256 (490)
=|+..||||+..+..+..++..
T Consensus 31 f~d~~Cp~C~~~~~~l~~~~~~ 52 (193)
T 3hz8_A 31 FFGYFCPHCAHLEPVLSKHAKS 52 (193)
T ss_dssp EECTTCHHHHHHHHHHHHHHTT
T ss_pred EECCCChhHHHHHHHHHHHHHH
Confidence 4667899999999877776644
No 253
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=20.72 E-value=37 Score=25.33 Aligned_cols=31 Identities=19% Similarity=0.544 Sum_probs=21.4
Q ss_pred eCcchhhhhcchhhhc--------CceeeccccCCceee
Q 011245 239 ACPYCYILYEYPKAYE--------DCTLKCQNCKRAFHG 269 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~Yl--------N~~LrCqnC~k~F~A 269 (490)
.|..|...|-....+. .....|..|++.|.-
T Consensus 6 ~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp ECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred cCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 6788877776554433 345679999999963
No 254
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.65 E-value=36 Score=25.16 Aligned_cols=31 Identities=16% Similarity=0.473 Sum_probs=21.6
Q ss_pred eCcchhhhhcchhhh-------c----CceeeccccCCceee
Q 011245 239 ACPYCYILYEYPKAY-------E----DCTLKCQNCKRAFHG 269 (490)
Q Consensus 239 ~Cp~C~~~YEY~R~Y-------l----N~~LrCqnC~k~F~A 269 (490)
.|..|...|.....+ . .....|..|.+.|.-
T Consensus 9 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~ 50 (78)
T 2d9h_A 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEK 50 (78)
T ss_dssp ECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESS
T ss_pred ECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCC
Confidence 788888777543322 2 346789999999963
No 255
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13
Probab=20.62 E-value=20 Score=32.80 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=14.5
Q ss_pred CCceeeeCcchhhhhcch
Q 011245 233 GPRFWTACPYCYILYEYP 250 (490)
Q Consensus 233 ~~TFWT~Cp~C~~~YEY~ 250 (490)
..=||.-|+||++...-+
T Consensus 118 veFf~~~C~~C~~~~p~~ 135 (197)
T 1un2_A 118 LEFFSFFCPHCYQFEEVL 135 (197)
T ss_dssp EEEECTTCHHHHHHHHTS
T ss_pred EEEECCCChhHHHhCccc
Confidence 356888999999998665
No 256
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=20.59 E-value=5.3e+02 Score=24.16 Aligned_cols=29 Identities=28% Similarity=0.084 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011245 10 AERWLSVAEKVLSSHDFQGARSFAIRARE 38 (490)
Q Consensus 10 A~R~l~iAek~L~~~D~~gAkrfa~KAq~ 38 (490)
+.-+..+|..++..++++.|..++.+|..
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444445555555555555555555544
No 257
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.50 E-value=31 Score=31.84 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=18.7
Q ss_pred ceeeeCcchhhhhcchhhhcCceeeccccCCc
Q 011245 235 RFWTACPYCYILYEYPKAYEDCTLKCQNCKRA 266 (490)
Q Consensus 235 TFWT~Cp~C~~~YEY~R~YlN~~LrCqnC~k~ 266 (490)
..| +|+.|-..|+-. .---.||.|+-+
T Consensus 154 ~~~-~C~~CG~~~~g~----~~p~~CP~C~~~ 180 (191)
T 1lko_A 154 TKW-RCRNCGYVHEGT----GAPELCPACAHP 180 (191)
T ss_dssp EEE-EETTTCCEEEEE----ECCSBCTTTCCB
T ss_pred ceE-EECCCCCEeeCC----CCCCCCCCCcCC
Confidence 578 899999888721 111189999875
No 258
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=20.38 E-value=18 Score=31.02 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=15.8
Q ss_pred CceeeeCcchhhhhcchhhhc
Q 011245 234 PRFWTACPYCYILYEYPKAYE 254 (490)
Q Consensus 234 ~TFWT~Cp~C~~~YEY~R~Yl 254 (490)
.=||-.||||+..++....++
T Consensus 27 Ef~dy~Cp~C~~~~~~~~~l~ 47 (184)
T 4dvc_A 27 EFFSFYCPHCNTFEPIIAQLK 47 (184)
T ss_dssp EEECTTCHHHHHHHHHHHHHH
T ss_pred EEECCCCHhHHHHhHHHHHHH
Confidence 468999999998876555544
No 259
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.30 E-value=45 Score=23.91 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=20.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011245 1 MATGFNRAEAERWLSVAEKVLSSHDFQGARSFAI 34 (490)
Q Consensus 1 M~m~~NkdEA~R~l~iAek~L~~~D~~gAkrfa~ 34 (490)
|+||..++.|.+++... ++.+.|..++.
T Consensus 17 ~~MGF~~~~a~~AL~~~------~n~e~A~~~L~ 44 (47)
T 2ekk_A 17 MDMGFTREHAMEALLNT------STMEQATEYLL 44 (47)
T ss_dssp HHHHCCHHHHHHHHHHS------CSHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHc------CCHHHHHHHHH
Confidence 45788888888877643 47888877664
No 260
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=20.10 E-value=1.5e+02 Score=23.70 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhCCchhhHhhhh
Q 011245 91 ATQYRKLALLLSPERNRFPFADRSFKLVYDAWSILSNPARKIMYDT 136 (490)
Q Consensus 91 KkaYRkLAl~lHPDKn~~~~AeeaFk~I~eAYevLSDp~kRa~YD~ 136 (490)
.+.+|...+.-||+. ...+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~----~~~eisk~lg~~Wk~ls~eeK~~Y~~~ 60 (92)
T 2crj_A 19 LNERREQIRTRHPDL----PFPEITKMLGAEWSKLQPAEKQRYLDE 60 (92)
T ss_dssp HHHHHHHHHHHCTTC----CHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345566666678875 467789999999999999887665553
Done!