BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011246
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FO9|A Chain A, Crystal Structure Of The E3 Sumo Ligase Pias2
Length = 360
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 108/247 (43%), Gaps = 35/247 (14%)
Query: 173 EAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQ 232
+ L A + Q Y + CI +N K+ P +A NG+ + RPG
Sbjct: 80 QVQLRLCLAETSCPQEDNYP-NSLCIKVNGKL---FPLPGYAPPPKNGIEQK---RPGRP 132
Query: 233 L-LGSNGRDDGALITLYIGEGVNQISLS-GCDI-RNFCFGVRLVKRQTVAQVLSLVPKET 289
L + S R A+ NQIS+S +I +N+ V LV++ T A +L +
Sbjct: 133 LNITSLVRLSSAV--------PNQISISWASEIGKNYSMSVYLVRQLTSAMLLQRL---- 180
Query: 290 AGEVFEDALTRVRRCFGGVATGNED--GDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKP 347
+ +R A E D D EI S+ V+L CP+ R+ + R
Sbjct: 181 -------KMKGIRNPDHSRALIKEKLTADPDSEIATTSLRVSLMCPLGKMRLTIPCRAVT 233
Query: 348 CVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIE 407
C H CFD ++++N++ W CP+C K + E LI+D F I N D+ EI+
Sbjct: 234 CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEIL----NDCSDVDEIK 289
Query: 408 VKHDGSW 414
+ DGSW
Sbjct: 290 FQEDGSW 296
>pdb|2RNO|A Chain A, Solution Structure Of The N-Terminal Sap Domain Of Sumo E3
Ligases From Oryza Sativa
Length = 110
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 17/87 (19%)
Query: 1 MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSD-----------------EGVARIIDDTY 43
+KELKD+L +LGLPKQGKKQDL+DR+ L+D E VA+I+DDTY
Sbjct: 22 IKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRKNSLTKEAVAKIVDDTY 81
Query: 44 RKMQISEAADLAIMGQSGLDICNVKVE 70
RKMQI A DLA SG D +E
Sbjct: 82 RKMQIQCAPDLATRSHSGSDFSFRPIE 108
>pdb|2RSD|A Chain A, Solution Structure Of The Plant Homeodomain (Phd) Of The
E3 Sumo Ligase Siz1 From Rice
Length = 68
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 75 DSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCET 134
DS K+ C C +++ ++S IQC D RC V QH++CV+IP+KP E +PP+F+CE
Sbjct: 3 DSFQPEAKVRCICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAE-VPPVFYCEL 61
Query: 135 CRIKRAD 141
CR+ RAD
Sbjct: 62 CRLSRAD 68
>pdb|1WEW|A Chain A, Solution Structure Of Phd Domain In Dna-Binding Family
Protein Aam98074
Length = 78
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 42/68 (61%)
Query: 73 AEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFC 132
ED K+ C CG SL ++S IQC DPRC V QH+ CVI+P+KPM+ LP F+C
Sbjct: 7 GEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYC 66
Query: 133 ETCRIKRA 140
E CR+
Sbjct: 67 EICRLTSG 74
>pdb|3I2D|A Chain A, Crystal Structure Of S. Cerevisiae Sumo E3 Ligase Siz1
Length = 371
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 113/253 (44%), Gaps = 31/253 (12%)
Query: 174 AAFHLTKAHSDLLQNTE-----YDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRT--- 225
A F L+KA +LL N Y L + + +Q+P EL+ N + ++
Sbjct: 98 AKFKLSKADYNLLSNPNSKHRLYLFSGMINPLGSRGNEPIQFPFPNELRCNNVQIKDNIR 157
Query: 226 --VNRPGTQLLGSNGRDDGALITLYIGEGVNQI--SLSGCDIRNFCFGVRLVKRQTVAQV 281
++PGT + D + Y + ++ + + + + F + V ++ + + +
Sbjct: 158 GFKSKPGT----AKPADLTPHLKPYTQQNNVELIYAFTTKEYKLFGYIVEMITPEQLLEK 213
Query: 282 LSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRV 341
+ PK + + L +++ D ++ + S I++L+CP+S +R++
Sbjct: 214 VLQHPKI----IKQATLLYLKKTL--------REDEEMGLTTTSTIMSLQCPISYTRMKY 261
Query: 342 AGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFAD 401
+ C H CFD F+ + WQCP+C + +LE+L I + + +++N
Sbjct: 262 PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEF---VDDILQNCQK 318
Query: 402 DLTEIEVKHDGSW 414
++ ++E+ DG W
Sbjct: 319 NVEQVELTSDGKW 331
>pdb|1HQX|A Chain A, R308k Arginase Variant
pdb|1HQX|B Chain B, R308k Arginase Variant
pdb|1HQX|C Chain C, R308k Arginase Variant
Length = 323
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 189 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 245
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 201 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREG--- 257
Query: 246 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 304
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 258 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVALTLSC 303
Query: 305 FGGVATGNEDGDSD 318
FG GN ++D
Sbjct: 304 FGTKKEGNHKPETD 317
>pdb|3E8Z|A Chain A, X-Ray Structure Of Rat Arginase I-N130a Mutant: The
Unliganded Complex
pdb|3E8Z|B Chain B, X-Ray Structure Of Rat Arginase I-N130a Mutant: The
Unliganded Complex
pdb|3E8Z|C Chain C, X-Ray Structure Of Rat Arginase I-N130a Mutant: The
Unliganded Complex
Length = 323
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 189 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 245
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 201 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREG--- 257
Query: 246 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 304
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 258 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVALTLSC 303
Query: 305 FGGVATGNEDGDSD 318
FG GN ++D
Sbjct: 304 FGTKREGNHKPETD 317
>pdb|3E8Q|A Chain A, X-Ray Structure Of Rat Arginase I-T135a: The Unliganded
Complex
pdb|3E8Q|B Chain B, X-Ray Structure Of Rat Arginase I-T135a: The Unliganded
Complex
pdb|3E8Q|C Chain C, X-Ray Structure Of Rat Arginase I-T135a: The Unliganded
Complex
pdb|3E9B|A Chain A, X-Ray Structure Of Rat Arginase I-T135a Mutant: The
Complex With Bec
pdb|3E9B|B Chain B, X-Ray Structure Of Rat Arginase I-T135a Mutant: The
Complex With Bec
pdb|3E9B|C Chain C, X-Ray Structure Of Rat Arginase I-T135a Mutant: The
Complex With Bec
Length = 323
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 189 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 245
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 201 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREG--- 257
Query: 246 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 304
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 258 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVALTLSC 303
Query: 305 FGGVATGNEDGDSD 318
FG GN ++D
Sbjct: 304 FGTKREGNHKPETD 317
>pdb|1RLA|A Chain A, Three-Dimensional Structure Of Rat Liver Arginase, The
Binuclear Manganese Metalloenzyme Of The Urea Cycle
pdb|1RLA|B Chain B, Three-Dimensional Structure Of Rat Liver Arginase, The
Binuclear Manganese Metalloenzyme Of The Urea Cycle
pdb|1RLA|C Chain C, Three-Dimensional Structure Of Rat Liver Arginase, The
Binuclear Manganese Metalloenzyme Of The Urea Cycle
pdb|1D3V|A Chain A, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With 2(S)-Amino-6-Boronohexanoic
Acid, An L-Arginine Analog
pdb|1D3V|B Chain B, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With 2(S)-Amino-6-Boronohexanoic
Acid, An L-Arginine Analog
pdb|1HQ5|A Chain A, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With S-(2-Boronoethyl)-L-Cysteine, An
L-Arginine Analogue
pdb|1HQ5|B Chain B, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With S-(2-Boronoethyl)-L-Cysteine, An
L-Arginine Analogue
pdb|1HQF|A Chain A, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With N-Hydroxy-L-Arginine
pdb|1HQF|B Chain B, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With N-Hydroxy-L-Arginine
pdb|1HQF|C Chain C, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With N-Hydroxy-L-Arginine
pdb|1HQH|A Chain A, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With Nor-N-Hydroxy-L-Arginine
pdb|1HQH|B Chain B, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With Nor-N-Hydroxy-L-Arginine
pdb|1HQH|C Chain C, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With Nor-N-Hydroxy-L-Arginine
pdb|1R1O|A Chain A, Amino Acid Sulfonamides As Transition-State Analogue
Inhibitors Of Arginase
pdb|1R1O|B Chain B, Amino Acid Sulfonamides As Transition-State Analogue
Inhibitors Of Arginase
pdb|1R1O|C Chain C, Amino Acid Sulfonamides As Transition-State Analogue
Inhibitors Of Arginase
Length = 323
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 189 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 245
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 201 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREG--- 257
Query: 246 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 304
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 258 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVALTLSC 303
Query: 305 FGGVATGNEDGDSD 318
FG GN ++D
Sbjct: 304 FGTKREGNHKPETD 317
>pdb|1HQG|A Chain A, Crystal Structure Of The H141c Arginase Variant Complexed
With Products Ornithine And Urea
pdb|1HQG|B Chain B, Crystal Structure Of The H141c Arginase Variant Complexed
With Products Ornithine And Urea
pdb|1HQG|C Chain C, Crystal Structure Of The H141c Arginase Variant Complexed
With Products Ornithine And Urea
Length = 323
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 189 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 245
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 201 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREG--- 257
Query: 246 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 304
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 258 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVALTLSC 303
Query: 305 FGGVATGNEDGDSD 318
FG GN ++D
Sbjct: 304 FGTKREGNHKPETD 317
>pdb|3RLA|A Chain A, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|3RLA|B Chain B, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|3RLA|C Chain C, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|4RLA|A Chain A, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|4RLA|B Chain B, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|4RLA|C Chain C, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|5RLA|A Chain A, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|5RLA|B Chain B, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|5RLA|C Chain C, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
Length = 323
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 189 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 245
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 201 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREG--- 257
Query: 246 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 304
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 258 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVALTLSC 303
Query: 305 FGGVATGNEDGDSD 318
FG GN ++D
Sbjct: 304 FGTKREGNHKPETD 317
>pdb|3GE4|A Chain A, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|B Chain B, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|C Chain C, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|D Chain D, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|E Chain E, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|F Chain F, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|G Chain G, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|H Chain H, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|I Chain I, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|J Chain J, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|K Chain K, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
pdb|3GE4|L Chain L, Crystal Structure Of Ferritin:dna-Binding Protein Dps From
Brucella Melitensis
Length = 173
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 8/48 (16%)
Query: 431 PDGSTYAARSEVVSNSETKQLVNSGQTIIARIKKNLSANVDQCLWLQQ 478
P S +A R+++ SN++T T+IA + +NL+A +D L +Q
Sbjct: 10 PKKSMHATRNDLPSNTKT--------TMIALLNENLAATIDLALITKQ 49
>pdb|2RLA|A Chain A, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|2RLA|B Chain B, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|2RLA|C Chain C, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
Length = 323
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 189 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 245
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 201 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREG--- 257
Query: 246 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 304
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 258 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVPLTLSC 303
Query: 305 FGGVATGNEDGDSD 318
FG GN ++D
Sbjct: 304 FGTKREGNHKPETD 317
>pdb|1P8M|A Chain A, Structural And Functional Importance Of First-shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase
I.
pdb|1P8M|B Chain B, Structural And Functional Importance Of First-shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase
I.
pdb|1P8M|C Chain C, Structural And Functional Importance Of First-shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase I
Length = 314
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 189 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 245
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 196 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREG--- 252
Query: 246 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 304
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 253 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVALTLSC 298
Query: 305 FGGVATGNEDGDSD 318
FG GN ++D
Sbjct: 299 FGTKREGNHKPETD 312
>pdb|1TA1|A Chain A, H141c Mutant Of Rat Liver Arginase I
pdb|1TA1|B Chain B, H141c Mutant Of Rat Liver Arginase I
pdb|1TA1|C Chain C, H141c Mutant Of Rat Liver Arginase I
Length = 314
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 189 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 245
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 196 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREG--- 252
Query: 246 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 304
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 253 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVALTLSC 298
Query: 305 FGGVATGNEDGDSD 318
FG GN ++D
Sbjct: 299 FGTKREGNHKPETD 312
>pdb|1P8O|A Chain A, Structural And Functional Importance Of First-Shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase
I.
pdb|1P8O|B Chain B, Structural And Functional Importance Of First-Shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase
I.
pdb|1P8O|C Chain C, Structural And Functional Importance Of First-Shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase I
Length = 314
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 189 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 245
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 196 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREG--- 252
Query: 246 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 304
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 253 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVALTLSC 298
Query: 305 FGGVATGNEDGDSD 318
FG GN ++D
Sbjct: 299 FGTKREGNHKPETD 312
>pdb|1T4S|A Chain A, Arginase-L-Valine Complex
pdb|1T4S|B Chain B, Arginase-L-Valine Complex
pdb|1T4S|C Chain C, Arginase-L-Valine Complex
pdb|1T4P|A Chain A, Arginase-Dehydro-Abh Complex
pdb|1T4P|B Chain B, Arginase-Dehydro-Abh Complex
pdb|1T4P|C Chain C, Arginase-Dehydro-Abh Complex
pdb|1T4R|A Chain A, Arginase-descarboxy-nor-noha Complex
pdb|1T4R|B Chain B, Arginase-descarboxy-nor-noha Complex
pdb|1T4R|C Chain C, Arginase-descarboxy-nor-noha Complex
pdb|1T4T|A Chain A, Arginase-Dinor-Noha Complex
pdb|1T4T|B Chain B, Arginase-Dinor-Noha Complex
pdb|1T4T|C Chain C, Arginase-Dinor-Noha Complex
Length = 314
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 189 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 245
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 196 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREG--- 252
Query: 246 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 304
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 253 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVALTLSC 298
Query: 305 FGGVATGNEDGDSD 318
FG GN ++D
Sbjct: 299 FGTKREGNHKPETD 312
>pdb|1TBJ|A Chain A, H141a Mutant Of Rat Liver Arginase I
pdb|1TBJ|B Chain B, H141a Mutant Of Rat Liver Arginase I
pdb|1TBJ|C Chain C, H141a Mutant Of Rat Liver Arginase I
Length = 314
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 189 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 245
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 196 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREG--- 252
Query: 246 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 304
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 253 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVALTLSC 298
Query: 305 FGGVATGNEDGDSD 318
FG GN ++D
Sbjct: 299 FGTKREGNHKPETD 312
>pdb|1P8N|A Chain A, Structural And Functional Importance Of First-shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase
I.
pdb|1P8N|B Chain B, Structural And Functional Importance Of First-shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase
I.
pdb|1P8N|C Chain C, Structural And Functional Importance Of First-shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase I
Length = 314
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 189 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 245
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 196 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFAVDGLDPVFTPATGTPVVGGLSYREG--- 252
Query: 246 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 304
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 253 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVALTLSC 298
Query: 305 FGGVATGNEDGDSD 318
FG GN ++D
Sbjct: 299 FGTKREGNHKPETD 312
>pdb|1TBH|A Chain A, H141d Mutant Of Rat Liver Arginase I
pdb|1TBH|B Chain B, H141d Mutant Of Rat Liver Arginase I
pdb|1TBH|C Chain C, H141d Mutant Of Rat Liver Arginase I
Length = 314
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 189 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 245
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 196 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREG--- 252
Query: 246 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 304
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 253 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVALTLSC 298
Query: 305 FGGVATGNEDGDSD 318
FG GN ++D
Sbjct: 299 FGTKREGNHKPETD 312
>pdb|1TBL|A Chain A, H141n Mutant Of Rat Liver Arginase I
pdb|1TBL|B Chain B, H141n Mutant Of Rat Liver Arginase I
pdb|1TBL|C Chain C, H141n Mutant Of Rat Liver Arginase I
Length = 314
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 189 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 245
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 196 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREG--- 252
Query: 246 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 304
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 253 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVALTLSC 298
Query: 305 FGGVATGNEDGDSD 318
FG GN ++D
Sbjct: 299 FGTKREGNHKPETD 312
>pdb|1P8P|A Chain A, Structural And Functional Importance Of First-shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase
I.
pdb|1P8P|B Chain B, Structural And Functional Importance Of First-shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase
I.
pdb|1P8P|C Chain C, Structural And Functional Importance Of First-shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase I
Length = 314
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 189 TEYDVQAWCILLNDKVSF---RMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALI 245
TE D ++ + S+ R + P+H V+GL GT ++G +G
Sbjct: 196 TEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREG--- 252
Query: 246 TLYIGEGVNQIS-LSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRC 304
LYI E + + LSG DI V L P+E V A+ C
Sbjct: 253 -LYITEEIYKTGLLSGLDIME------------VNPTLGKTPEEVTRTV-NTAVALTLSC 298
Query: 305 FGGVATGNEDGDSD 318
FG GN ++D
Sbjct: 299 FGTKREGNHKPETD 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,583,968
Number of Sequences: 62578
Number of extensions: 601379
Number of successful extensions: 1158
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1150
Number of HSP's gapped (non-prelim): 23
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)