Query 011246
Match_columns 490
No_of_seqs 266 out of 524
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 04:10:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fo9_A E3 SUMO-protein ligase 100.0 4.1E-57 1.4E-61 461.7 24.4 288 125-438 14-323 (360)
2 3i2d_A E3 SUMO-protein ligase 100.0 6.6E-55 2.2E-59 446.5 22.4 267 139-426 69-343 (371)
3 2rno_A Putative DNA-binding pr 99.9 9E-23 3.1E-27 170.1 5.1 71 1-72 22-109 (110)
4 2rsd_A E3 SUMO-protein ligase 99.5 2.5E-14 8.4E-19 113.8 4.0 66 75-141 3-68 (68)
5 1v66_A Protein inhibitor of ac 99.4 8.3E-14 2.8E-18 107.6 3.6 47 1-47 16-65 (65)
6 1wew_A DNA-binding family prot 99.4 2.9E-13 9.9E-18 110.4 4.0 71 72-142 6-76 (78)
7 2lv9_A Histone-lysine N-methyl 98.9 1.2E-09 4.1E-14 92.7 4.9 53 79-139 25-77 (98)
8 3o7a_A PHD finger protein 13 v 98.9 5.8E-10 2E-14 83.8 2.5 50 80-137 2-51 (52)
9 3o70_A PHD finger protein 13; 98.8 1.2E-09 4E-14 86.8 3.4 53 78-138 15-67 (68)
10 3htk_C E3 SUMO-protein ligase 98.8 1.9E-09 6.4E-14 106.2 4.4 75 320-396 172-248 (267)
11 1wee_A PHD finger family prote 98.7 5.7E-09 1.9E-13 83.6 3.0 54 79-139 13-67 (72)
12 1wep_A PHF8; structural genomi 98.6 1.4E-08 4.6E-13 82.8 2.4 59 79-143 9-68 (79)
13 1wem_A Death associated transc 98.6 4.4E-09 1.5E-13 85.0 -1.1 57 81-139 15-71 (76)
14 3kqi_A GRC5, PHD finger protei 98.6 9.5E-09 3.2E-13 82.9 0.9 58 80-143 8-66 (75)
15 1we9_A PHD finger family prote 98.5 3.3E-08 1.1E-12 77.1 3.0 55 79-139 3-59 (64)
16 1weu_A Inhibitor of growth fam 98.5 1.6E-07 5.4E-12 78.6 6.0 64 68-139 22-86 (91)
17 1wen_A Inhibitor of growth fam 98.2 9.4E-07 3.2E-11 70.6 4.9 56 76-139 10-66 (71)
18 2g6q_A Inhibitor of growth pro 98.2 2.9E-07 9.9E-12 71.7 1.4 55 77-139 6-61 (62)
19 3c6w_A P28ING5, inhibitor of g 98.2 3.9E-07 1.3E-11 70.2 1.8 52 79-138 6-58 (59)
20 1x4i_A Inhibitor of growth pro 98.1 6.8E-07 2.3E-11 71.2 2.0 50 79-138 3-55 (70)
21 2vnf_A ING 4, P29ING4, inhibit 98.1 7.3E-07 2.5E-11 68.9 1.5 55 77-139 5-60 (60)
22 3kv5_D JMJC domain-containing 98.0 7.5E-07 2.6E-11 95.3 -0.0 57 77-139 32-89 (488)
23 2k16_A Transcription initiatio 98.0 2.8E-06 9.6E-11 68.1 2.5 52 80-138 16-68 (75)
24 2ri7_A Nucleosome-remodeling f 97.9 1.1E-06 3.7E-11 81.3 -0.7 56 78-139 4-60 (174)
25 2kgg_A Histone demethylase jar 97.9 1.6E-06 5.4E-11 65.0 0.0 47 84-136 5-52 (52)
26 2jmi_A Protein YNG1, ING1 homo 97.9 6.1E-06 2.1E-10 68.8 3.1 50 77-136 21-74 (90)
27 3kv4_A PHD finger protein 8; e 97.8 1.9E-06 6.6E-11 91.1 -1.6 54 80-139 3-57 (447)
28 2yu4_A E3 SUMO-protein ligase 97.3 0.00015 5.3E-09 60.2 4.1 69 328-398 6-81 (94)
29 3lqh_A Histone-lysine N-methyl 97.2 3.5E-05 1.2E-09 72.3 -1.1 55 83-139 3-64 (183)
30 2do1_A Nuclear protein HCC-1; 97.1 0.00023 7.7E-09 54.0 2.9 32 1-32 15-46 (55)
31 2rnn_A E3 SUMO-protein ligase 97.1 0.00036 1.2E-08 60.3 4.3 47 1-47 42-97 (114)
32 2kr4_A Ubiquitin conjugation f 97.1 0.00026 8.9E-09 57.8 3.0 66 326-396 11-76 (85)
33 1zrj_A E1B-55KDA-associated pr 97.0 0.00031 1.1E-08 52.2 2.8 32 1-32 15-46 (50)
34 2xb1_A Pygopus homolog 2, B-ce 97.0 8.9E-05 3E-09 63.4 -0.6 52 86-139 8-62 (105)
35 1wgm_A Ubiquitin conjugation f 96.9 0.0011 3.9E-08 55.6 5.4 66 326-396 19-85 (98)
36 2vpb_A Hpygo1, pygopus homolog 96.9 8.9E-05 3.1E-09 58.1 -1.4 52 83-136 10-64 (65)
37 2kvu_A MKL/myocardin-like prot 96.9 0.00041 1.4E-08 55.6 2.4 32 1-32 31-62 (75)
38 1h1j_S THO1 protein; SAP domai 96.9 0.00065 2.2E-08 50.6 3.3 31 1-31 10-40 (51)
39 2bay_A PRE-mRNA splicing facto 96.8 0.00035 1.2E-08 53.8 1.2 53 328-384 2-54 (61)
40 2kre_A Ubiquitin conjugation f 96.6 0.0016 5.4E-08 54.9 4.5 66 327-397 27-92 (100)
41 1jjr_A KU70, thyroid autoantig 96.5 0.0012 4.2E-08 59.8 3.2 33 1-33 66-98 (151)
42 3pur_A Lysine-specific demethy 96.5 0.00064 2.2E-08 72.8 1.4 52 81-138 39-94 (528)
43 1t1h_A Gspef-atpub14, armadill 96.5 0.0019 6.5E-08 51.0 3.7 65 329-397 8-72 (78)
44 3ztg_A E3 ubiquitin-protein li 96.4 0.003 1E-07 51.5 4.7 67 329-398 13-81 (92)
45 2f42_A STIP1 homology and U-bo 96.2 0.0035 1.2E-07 58.5 4.2 66 327-396 104-169 (179)
46 2ku3_A Bromodomain-containing 96.1 0.002 6.8E-08 51.2 1.9 50 84-142 19-70 (71)
47 1f62_A Transcription factor WS 96.1 0.0029 1E-07 46.6 2.5 45 86-137 5-49 (51)
48 2e6r_A Jumonji/ARID domain-con 96.0 0.0026 9E-08 52.9 2.5 52 80-138 14-66 (92)
49 2y43_A E3 ubiquitin-protein li 95.6 0.014 4.8E-07 48.2 5.1 67 328-398 21-87 (99)
50 2l43_A N-teminal domain from h 95.5 0.0041 1.4E-07 51.3 1.6 54 83-145 26-82 (88)
51 2l5u_A Chromodomain-helicase-D 95.4 0.0098 3.4E-07 45.6 3.2 52 77-138 6-58 (61)
52 2c2l_A CHIP, carboxy terminus 95.3 0.0091 3.1E-07 57.7 3.7 64 329-396 208-271 (281)
53 2ku7_A MLL1 PHD3-CYP33 RRM chi 95.3 0.0016 5.3E-08 56.5 -1.7 42 95-138 1-44 (140)
54 3lrq_A E3 ubiquitin-protein li 95.0 0.015 5.3E-07 48.3 3.5 69 327-399 20-89 (100)
55 1xwh_A Autoimmune regulator; P 94.9 0.015 5.3E-07 45.2 3.1 49 81-139 7-56 (66)
56 2lri_C Autoimmune regulator; Z 94.9 0.017 5.8E-07 45.1 3.2 46 83-138 13-59 (66)
57 2ckl_A Polycomb group ring fin 94.8 0.035 1.2E-06 46.5 5.2 65 328-396 14-82 (108)
58 2ckl_B Ubiquitin ligase protei 94.6 0.018 6.1E-07 52.1 3.1 70 325-398 50-121 (165)
59 3asl_A E3 ubiquitin-protein li 94.6 0.019 6.6E-07 45.3 2.9 47 86-138 23-69 (70)
60 1jm7_B BARD1, BRCA1-associated 94.5 0.027 9.4E-07 48.0 3.9 62 329-397 22-84 (117)
61 2yql_A PHD finger protein 21A; 94.5 0.026 8.8E-07 42.4 3.2 45 82-136 9-54 (56)
62 2e6s_A E3 ubiquitin-protein li 94.3 0.035 1.2E-06 44.7 3.9 46 86-137 31-76 (77)
63 3fl2_A E3 ubiquitin-protein li 94.1 0.041 1.4E-06 47.3 4.3 65 327-396 50-116 (124)
64 3rsn_A SET1/ASH2 histone methy 94.1 0.029 1E-06 52.0 3.5 56 80-138 3-59 (177)
65 1jm7_A BRCA1, breast cancer ty 94.1 0.031 1.1E-06 46.8 3.5 57 329-388 21-78 (112)
66 2yt5_A Metal-response element- 94.1 0.03 1E-06 43.2 3.0 51 83-138 7-61 (66)
67 3hct_A TNF receptor-associated 94.1 0.023 7.9E-07 48.6 2.5 67 325-396 14-81 (118)
68 2ecw_A Tripartite motif-contai 93.9 0.0099 3.4E-07 47.0 -0.2 62 328-390 18-81 (85)
69 1z6u_A NP95-like ring finger p 93.7 0.06 2.1E-06 48.3 4.7 65 328-397 77-143 (150)
70 2ecy_A TNF receptor-associated 93.6 0.092 3.1E-06 39.8 5.0 53 327-383 13-65 (66)
71 2puy_A PHD finger protein 21A; 93.5 0.035 1.2E-06 42.2 2.4 45 84-138 7-52 (60)
72 2ecv_A Tripartite motif-contai 92.8 0.016 5.4E-07 45.8 -0.5 62 327-389 17-80 (85)
73 2ysl_A Tripartite motif-contai 92.5 0.094 3.2E-06 40.3 3.6 55 327-384 18-73 (73)
74 4gne_A Histone-lysine N-methyl 92.3 0.098 3.3E-06 44.7 3.7 46 81-136 14-60 (107)
75 1fp0_A KAP-1 corepressor; PHD 92.2 0.19 6.4E-06 41.5 5.2 49 80-138 23-72 (88)
76 3shb_A E3 ubiquitin-protein li 92.2 0.079 2.7E-06 42.6 2.8 46 86-137 31-76 (77)
77 2yur_A Retinoblastoma-binding 91.7 0.079 2.7E-06 41.3 2.3 50 328-380 14-64 (74)
78 3hcs_A TNF receptor-associated 91.7 0.076 2.6E-06 48.1 2.5 68 324-396 13-81 (170)
79 2djb_A Polycomb group ring fin 91.5 0.11 3.8E-06 40.1 3.0 51 329-384 15-66 (72)
80 2ysm_A Myeloid/lymphoid or mix 91.3 0.12 4.1E-06 43.8 3.3 48 86-140 59-106 (111)
81 3ask_A E3 ubiquitin-protein li 91.3 0.12 4.2E-06 49.7 3.5 45 86-137 179-224 (226)
82 2kwj_A Zinc finger protein DPF 91.2 0.11 3.6E-06 44.6 2.7 46 86-138 63-108 (114)
83 3o36_A Transcription intermedi 91.0 0.15 5E-06 47.1 3.7 44 86-139 9-52 (184)
84 2egp_A Tripartite motif-contai 90.9 0.016 5.5E-07 45.4 -2.6 58 329-389 12-74 (79)
85 4bbq_A Lysine-specific demethy 90.4 0.15 5E-06 43.6 2.9 42 94-138 73-114 (117)
86 2csy_A Zinc finger protein 183 90.3 0.28 9.6E-06 38.6 4.3 55 329-390 15-70 (81)
87 1mm2_A MI2-beta; PHD, zinc fin 90.0 0.27 9.2E-06 37.4 3.8 46 83-138 10-56 (61)
88 3l11_A E3 ubiquitin-protein li 89.9 0.12 4.1E-06 43.6 1.9 64 329-396 15-85 (115)
89 1rmd_A RAG1; V(D)J recombinati 88.7 0.25 8.6E-06 41.7 3.1 65 327-396 21-87 (116)
90 4ayc_A E3 ubiquitin-protein li 87.5 0.21 7.1E-06 43.8 1.8 59 330-393 54-114 (138)
91 1g25_A CDK-activating kinase a 87.1 0.49 1.7E-05 35.5 3.5 52 330-385 4-60 (65)
92 3v43_A Histone acetyltransfera 86.6 0.48 1.6E-05 40.3 3.6 45 86-137 66-111 (112)
93 2xeu_A Ring finger protein 4; 85.9 0.29 1E-05 36.2 1.6 50 330-384 4-60 (64)
94 3ng2_A RNF4, snurf, ring finge 84.5 0.39 1.3E-05 36.4 1.8 50 330-384 11-67 (71)
95 1chc_A Equine herpes virus-1 r 83.4 0.7 2.4E-05 34.8 2.8 44 331-379 7-51 (68)
96 2ct2_A Tripartite motif protei 83.1 0.74 2.5E-05 36.3 3.0 51 329-382 15-70 (88)
97 3knv_A TNF receptor-associated 83.1 0.18 6E-06 44.8 -0.8 72 320-396 22-103 (141)
98 2ect_A Ring finger protein 126 83.0 0.71 2.4E-05 35.8 2.8 51 329-384 15-68 (78)
99 3u5n_A E3 ubiquitin-protein li 82.0 0.7 2.4E-05 43.4 2.8 46 84-139 9-55 (207)
100 2jx3_A Protein DEK; alpha heli 81.4 0.94 3.2E-05 39.9 3.2 33 2-34 78-110 (131)
101 2d8t_A Dactylidin, ring finger 81.2 0.3 1E-05 37.5 -0.0 48 329-381 15-62 (71)
102 1wev_A Riken cDNA 1110020M19; 80.9 0.93 3.2E-05 37.0 2.9 54 82-139 16-73 (88)
103 1x4j_A Ring finger protein 38; 79.0 0.92 3.1E-05 35.0 2.2 46 331-381 25-73 (75)
104 2ysj_A Tripartite motif-contai 78.8 1.8 6.2E-05 32.0 3.7 46 326-374 17-63 (63)
105 2ecj_A Tripartite motif-contai 78.1 2.3 7.9E-05 30.6 4.0 43 329-374 15-58 (58)
106 2ecm_A Ring finger and CHY zin 77.5 1.6 5.6E-05 31.1 3.0 44 331-379 7-54 (55)
107 2ysm_A Myeloid/lymphoid or mix 77.1 2.6 8.8E-05 35.5 4.6 46 84-136 9-55 (111)
108 4ap4_A E3 ubiquitin ligase RNF 76.8 1.3 4.3E-05 37.4 2.6 50 330-384 8-64 (133)
109 1bor_A Transcription factor PM 76.2 1.3 4.5E-05 32.4 2.2 45 330-382 7-51 (56)
110 1iym_A EL5; ring-H2 finger, ub 73.7 2.2 7.4E-05 30.5 2.8 44 331-379 7-54 (55)
111 2ro1_A Transcription intermedi 72.4 2.1 7.2E-05 39.7 3.1 43 86-138 7-49 (189)
112 1e4u_A Transcriptional repress 71.6 4.8 0.00016 31.8 4.6 51 330-383 12-65 (78)
113 2do5_A Splicing factor 3B subu 70.8 4.3 0.00015 29.8 3.7 28 2-29 14-41 (58)
114 2ea6_A Ring finger protein 4; 70.1 1.8 6.1E-05 32.3 1.7 46 329-379 15-67 (69)
115 2ep4_A Ring finger protein 24; 66.8 3 0.0001 31.8 2.4 46 329-379 15-63 (74)
116 2kiz_A E3 ubiquitin-protein li 62.9 4.1 0.00014 30.5 2.5 46 330-380 15-63 (69)
117 3v43_A Histone acetyltransfera 62.0 1.4 4.9E-05 37.3 -0.4 40 93-136 23-62 (112)
118 1v87_A Deltex protein 2; ring- 60.6 4.4 0.00015 33.6 2.5 49 331-379 27-93 (114)
119 2ecl_A Ring-box protein 2; RNF 56.2 4.6 0.00016 31.8 1.7 33 347-383 47-79 (81)
120 2ecg_A Baculoviral IAP repeat- 56.2 5.2 0.00018 30.9 2.0 43 329-380 25-68 (75)
121 4ic3_A E3 ubiquitin-protein li 56.0 2.6 8.8E-05 32.6 0.2 41 330-379 25-66 (74)
122 4ap4_A E3 ubiquitin ligase RNF 52.8 4.1 0.00014 34.2 0.9 50 330-384 73-129 (133)
123 2vje_B MDM4 protein; proto-onc 52.6 5 0.00017 30.1 1.3 45 331-379 9-55 (63)
124 2ecn_A Ring finger protein 141 50.9 2.4 8.3E-05 31.9 -0.7 48 329-382 15-62 (70)
125 2vje_A E3 ubiquitin-protein li 48.5 6.9 0.00024 29.4 1.6 45 331-379 10-56 (64)
126 2yrc_A Protein transport prote 48.3 2.5 8.6E-05 32.1 -1.0 14 364-377 29-42 (59)
127 2l0b_A E3 ubiquitin-protein li 48.1 8.7 0.0003 30.7 2.2 46 330-380 41-89 (91)
128 6rxn_A Rubredoxin; electron tr 46.7 5.5 0.00019 28.7 0.7 12 366-377 28-39 (46)
129 2kwj_A Zinc finger protein DPF 43.9 4.9 0.00017 34.1 0.0 40 93-136 20-59 (114)
130 2j9u_B VPS36, vacuolar protein 43.6 7.4 0.00025 31.0 1.0 10 366-375 15-24 (76)
131 1kcf_A Hypothetical 30.2 KD pr 42.2 16 0.00055 35.5 3.4 28 2-29 7-34 (258)
132 2e61_A Zinc finger CW-type PWW 41.4 24 0.00082 27.5 3.6 42 93-145 15-56 (69)
133 1a62_A RHO; transcription term 39.3 18 0.00062 31.4 3.0 29 1-29 11-41 (130)
134 2k5c_A Uncharacterized protein 38.1 3.4 0.00012 33.4 -1.7 16 369-384 9-24 (95)
135 1e8j_A Rubredoxin; iron-sulfur 38.0 10 0.00035 27.9 1.0 12 366-377 34-45 (52)
136 2yho_A E3 ubiquitin-protein li 37.9 7.6 0.00026 30.5 0.3 40 331-379 20-60 (79)
137 4rxn_A Rubredoxin; electron tr 37.7 9.1 0.00031 28.5 0.7 12 366-377 34-45 (54)
138 3t6p_A Baculoviral IAP repeat- 37.7 9.1 0.00031 38.8 0.9 43 328-379 294-337 (345)
139 2v3b_B Rubredoxin 2, rubredoxi 37.6 10 0.00034 28.3 0.9 12 366-377 34-45 (55)
140 1yk4_A Rubredoxin, RD; electro 36.1 10 0.00034 28.0 0.7 12 366-377 33-44 (52)
141 2ea5_A Cell growth regulator w 34.8 21 0.00071 27.1 2.3 40 331-379 17-57 (68)
142 2kn9_A Rubredoxin; metalloprot 33.9 12 0.00042 30.1 0.9 12 366-377 58-69 (81)
143 1dx8_A Rubredoxin; electron tr 33.3 12 0.0004 29.3 0.7 12 366-377 38-49 (70)
144 3vk6_A E3 ubiquitin-protein li 30.9 18 0.00062 30.3 1.5 45 331-378 3-47 (101)
145 1wim_A KIAA0161 protein; ring 29.3 16 0.00054 29.2 0.8 52 330-381 6-67 (94)
146 1s24_A Rubredoxin 2; electron 29.0 17 0.00058 29.7 1.0 12 366-377 66-77 (87)
147 2m0e_A Zinc finger and BTB dom 28.1 29 0.00099 19.6 1.7 14 368-381 2-15 (29)
148 2kvh_A Zinc finger and BTB dom 26.5 19 0.00066 20.5 0.7 13 367-379 2-14 (27)
149 1ard_A Yeast transcription fac 24.9 26 0.00089 20.0 1.1 13 368-380 2-14 (29)
150 1p7a_A BF3, BKLF, kruppel-like 24.7 27 0.00091 21.6 1.2 14 367-380 10-23 (37)
151 1klr_A Zinc finger Y-chromosom 24.4 30 0.001 19.8 1.3 13 368-380 2-14 (30)
152 2y1n_A E3 ubiquitin-protein li 24.2 24 0.00082 36.4 1.3 48 330-382 333-381 (389)
153 1lv3_A Hypothetical protein YA 23.9 22 0.00077 27.7 0.8 18 363-380 4-21 (68)
154 3oba_A Beta-galactosidase; TIM 23.2 1.5E+02 0.0052 34.2 7.8 67 171-260 115-181 (1032)
155 2lbm_A Transcriptional regulat 23.0 18 0.00061 32.2 0.0 51 83-138 64-117 (142)
156 2kvf_A Zinc finger and BTB dom 22.3 26 0.0009 20.0 0.7 13 368-380 3-15 (28)
157 2elr_A Zinc finger protein 406 22.0 30 0.001 21.1 1.0 14 367-380 8-21 (36)
158 2lvu_A Zinc finger and BTB dom 27.4 19 0.00066 20.3 0.0 13 368-380 2-14 (26)
159 3dpl_R Ring-box protein 1; ubi 21.2 39 0.0013 28.1 1.8 31 346-380 71-101 (106)
160 2m0f_A Zinc finger and BTB dom 20.8 28 0.00097 19.7 0.6 12 368-379 2-13 (29)
161 3mjh_B Early endosome antigen 20.7 12 0.0004 25.3 -1.2 15 369-383 6-20 (34)
162 1znf_A 31ST zinc finger from X 20.6 34 0.0012 19.2 1.0 12 369-380 2-13 (27)
163 1weq_A PHD finger protein 7; s 20.4 78 0.0027 25.6 3.4 48 81-138 25-79 (85)
No 1
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=100.00 E-value=4.1e-57 Score=461.75 Aligned_cols=288 Identities=26% Similarity=0.412 Sum_probs=212.8
Q ss_pred CCCCceecccceeccCCccceeeecccccceeeecccCCCCCCCcceeeEEEEeCHhhHHhhcCC---------CceEEE
Q 011246 125 LLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNT---------EYDVQA 195 (490)
Q Consensus 125 ~~p~~f~C~~Crl~~~dPF~~~i~~ll~P~~l~~s~i~~~g~~~~q~~~~~F~Lt~~~~~~l~~~---------~~~lql 195 (490)
.+|+. +++. .|||+++++|++|+.|.++ +++.+|+..|.|.||++|...++.. +|++||
T Consensus 14 ~~~~~------~~k~-lPFy~v~~~l~~Pt~L~~~-----~~~~~~~~~f~f~lt~~q~~~i~~~~~~~~~~~~~~~vqv 81 (360)
T 4fo9_A 14 LYFQG------QLKN-LPFYDVLDVLIKPTSLVQS-----SIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQV 81 (360)
T ss_dssp ---CC------CBCC-CTTEEEEEEEEEEEECCCC-----SSCSEEEEEEEECCCHHHHHHHHTCEEECTTSCEEESEEE
T ss_pred cCCCc------eecC-CCchHhHhhhcCceecccc-----cCcccccceeEEEcCHHHHHHHhhccccccccccceeEEE
Confidence 35666 7775 7999999999999999765 4567889999999999999888642 355555
Q ss_pred --E-EEeecCCCccccCCCcceEEEEcCeEEeecCCCCcccCCC-CCCCCCCc-ccccccCc---ccEEEEEEe-c-cce
Q 011246 196 --W-CILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGS-NGRDDGAL-ITLYIGEG---VNQISLSGC-D-IRN 265 (490)
Q Consensus 196 --~-C~~l~d~~~~~~~wP~~~~i~VNg~~v~~~~rp~~~~~g~-~~r~~~p~-IT~~lk~g---~N~I~is~~-d-~~~ 265 (490)
| |.. ++..++++.||.+++|+|||+.|+.++..++++.|. ++|...|+ ||++++.| .|+|+|+|. + .+.
T Consensus 82 qlRfC~~-~~~~~q~~~fP~~i~lkVNg~~v~lp~~~p~~k~g~~~kr~~~PidIT~~lr~~~~~~N~I~vt~~~~~~~~ 160 (360)
T 4fo9_A 82 QLRLCLA-ETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGKN 160 (360)
T ss_dssp EEEEEEC--C-CCBCCBCCTTCEEEETTEEECCCC--------CCCCCBCCCEECGGGSCCCSSSCEEEEEEEECBTTBC
T ss_pred EEEEEEc-cCCCcccccCCCceEEEECCEEccCCCCCCCcccccccCCCCCceechhhhccCCCCCcEEEEEEecCCCce
Confidence 4 655 567899999999999999999999764322344554 35555555 99999987 599999996 3 689
Q ss_pred EEEEEEEEeecCHHHHHHhcccCCCCCcHHHHHHHHHHhhCCccCCCCCCCCCceeeeeceEEeecCCCCccccccccCC
Q 011246 266 FCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRF 345 (490)
Q Consensus 266 y~~~V~lVk~~t~e~ll~~I~~~~~~~~~e~al~rik~~l~~~~~~~~d~DdD~eIv~~s~~vsL~CPls~~ri~~P~R~ 345 (490)
|+++|++|+++|+++|++.|+++ ...+.+.++++|++++.. |+|.||+++++.|||+||||++||++|+||
T Consensus 161 y~l~V~lV~~~s~~~Llq~l~~k-~~~~~e~t~~~Ik~~l~~--------d~DddI~~~~~~vSL~CPlS~~ri~~P~Rg 231 (360)
T 4fo9_A 161 YSMSVYLVRQLTSAMLLQRLKMK-GIRNPDHSRALIKEKLTA--------DPDSEIATTSLRVSLMCPLGKMRLTIPCRA 231 (360)
T ss_dssp EEEEEEEEEECCHHHHHHHHHTC--CBCHHHHHHHHHHHHC-----------------CCEEEESBCTTTCSBCSSEEEE
T ss_pred EEEEEEEEEeCCHHHHHHHHHhc-CCCCHHHHHHHHHHHhcc--------CCccceeeeeeEEeeeCCCccceeccCCcC
Confidence 99999999999999999999864 356788999999998842 233358889999999999999999999999
Q ss_pred CCcCcccccCHHHHHHHHcCCCeeecCCCCCCCCCCCeeecHHHHHHHHHHhcCCCCeeEEEEeeCCcEEEeecCC---C
Q 011246 346 KPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGE---N 422 (490)
Q Consensus 346 ~~C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~~~L~ID~y~~~il~~l~~~~~dv~eV~v~~DGsW~~~~e~e---~ 422 (490)
..|+|+|||||++||+|+++.++|+||||++.+++++|+||+||++|| +++ .++++|+|++||+|++..+.. +
T Consensus 232 ~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL---~~~-~~v~~I~v~~DGsW~p~~~k~e~~~ 307 (360)
T 4fo9_A 232 VTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEIL---NDC-SDVDEIKFQEDGSWCPMRPKKEAMK 307 (360)
T ss_dssp TTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHH---TTC-SSCCEEEECC-CCEEC---------
T ss_pred CCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHH---HhC-CCCCEEEECCCCceecCCCCccccc
Confidence 999999999999999999999999999999999999999999999995 455 489999999999999863333 3
Q ss_pred CCcCCccCCCCCcccc
Q 011246 423 NNLAEWHSPDGSTYAA 438 (490)
Q Consensus 423 ~~~~~~~~~~g~~~~~ 438 (490)
....+|...||+...+
T Consensus 308 ~~~~~~~~~~~~~~~~ 323 (360)
T 4fo9_A 308 VSSQPCTKIESSSVLS 323 (360)
T ss_dssp ----------------
T ss_pred ccCCCCCCcccccccc
Confidence 6667888888877655
No 2
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-55 Score=446.50 Aligned_cols=267 Identities=22% Similarity=0.382 Sum_probs=216.5
Q ss_pred cCCccceeeecccccceeeecccCCCCCCCcceeeEEEEeCHhhHHhhcC--CCceEEEEEEeecCC---CccccCCCcc
Q 011246 139 RADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQN--TEYDVQAWCILLNDK---VSFRMQWPLH 213 (490)
Q Consensus 139 ~~dPF~~~i~~ll~P~~l~~s~i~~~g~~~~q~~~~~F~Lt~~~~~~l~~--~~~~lql~C~~l~d~---~~~~~~wP~~ 213 (490)
+..|||+.+..+-........ .+....+...|.|+++++++|++ ++|+|+|||+..++- ..++++||..
T Consensus 69 k~SPFY~i~~~i~~~~~~~~~------~~~R~~~~~~F~Ls~~~~~~L~~~~~~~rl~L~C~~~~~~~~~~~~~i~fP~~ 142 (371)
T 3i2d_A 69 KESPFYKIQRLIPELVMNVEV------TGGRGMCSAKFKLSKADYNLLSNPNSKHRLYLFSGMINPLGSRGNEPIQFPFP 142 (371)
T ss_dssp CCBTTEEEEEEEEEEEEEECC------EEEEEEEEEEECCCHHHHHHHHSTTCCEEEEEEEEESSCSSCGGGBCCCCCSS
T ss_pred cCCCCceeeeecCCccccccc------cCCCCEEEEEEEECHHHHHHHhcCCCCceEEEEeeecCCCCCCCCcCeecCCc
Confidence 469999977654433222211 11234688899999999999984 679999999998652 3567999999
Q ss_pred eEEEEcCeEEeecCCCCcccCCCCCCCCCCcccccccCc--ccEEEEEEe-ccceEEEEEEEEeecCHHHHHHhcccCCC
Q 011246 214 AELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEG--VNQISLSGC-DIRNFCFGVRLVKRQTVAQVLSLVPKETA 290 (490)
Q Consensus 214 ~~i~VNg~~v~~~~rp~~~~~g~~~r~~~p~IT~~lk~g--~N~I~is~~-d~~~y~~~V~lVk~~t~e~ll~~I~~~~~ 290 (490)
++|+|||..|+.+.|+.+ +++|++.|++||++++.+ .|+|+|+|. +.+.|+++|++|+++++++|++.|.+++
T Consensus 143 ~eI~VNg~~vk~n~rGlK---nk~Gt~~PvDIT~~lr~~~~~N~I~i~y~~~~~~Y~i~v~lVk~~s~e~Ll~~I~~~~- 218 (371)
T 3i2d_A 143 NELRCNNVQIKDNIRGFK---SKPGTAKPADLTPHLKPYTQQNNVELIYAFTTKEYKLFGYIVEMITPEQLLEKVLQHP- 218 (371)
T ss_dssp EEEEETTEECCSCCSSCT---TSCGGGSCEECGGGCCCSSSCEEEEEEEEEESSCEEEEEEEEEECCHHHHHHHHHTSC-
T ss_pred eEEEECCEEeccccccCC---CCCCCcCCCCchhhhccCCCCcEEEEEEecccceEEEEEEEEEecCHHHHHHHHHhcC-
Confidence 999999999998777654 456777788899999985 799999985 6789999999999999999999998754
Q ss_pred CCcHHHHHHHHHHhhCCccCCCCCCCCCceeeeeceEEeecCCCCccccccccCCCCcCcccccCHHHHHHHHcCCCeee
Q 011246 291 GEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQ 370 (490)
Q Consensus 291 ~~~~e~al~rik~~l~~~~~~~~d~DdD~eIv~~s~~vsL~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~~~~~W~ 370 (490)
..+.++++++|++.+.. ++|+ ||+++++.|||+||||++||++|+||..|.|+|||||++||+|+++.++|+
T Consensus 219 ~i~~e~tl~~Ik~~ls~------d~Dd--DIv~~s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~ 290 (371)
T 3i2d_A 219 KIIKQATLLYLKKTLRE------DEEM--GLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQ 290 (371)
T ss_dssp CBCHHHHHHHHHHHHHS------CC--------CEEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCB
T ss_pred CCCHHHHHHHHHHHhcc------CCCC--ceeeeeeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCcee
Confidence 46778899999998852 2333 478899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCeeecHHHHHHHHHHhcCCCCeeEEEEeeCCcEEEeecCCCCCcC
Q 011246 371 CPICMKNYSLEDLIIDPYFHRITTMMRNFADDLTEIEVKHDGSWRVKCKGENNNLA 426 (490)
Q Consensus 371 CPiC~k~~~~~~L~ID~y~~~il~~l~~~~~dv~eV~v~~DGsW~~~~e~e~~~~~ 426 (490)
||||++.+++++|+||+||++| |++++++|++|+|++||+|+++.|+++++.+
T Consensus 291 CPIC~k~~~~~dL~ID~~~~~I---L~~~~~dve~V~v~~DGsW~p~~e~~~d~~~ 343 (371)
T 3i2d_A 291 CPVCQIDIALENLAISEFVDDI---LQNCQKNVEQVELTSDGKWTAILEDDDDSDS 343 (371)
T ss_dssp CTTTCCBCCGGGEEEBHHHHHH---HTTSCTTCCEEEEETTSCEEECC--------
T ss_pred CCCCCcccCHHHeeEcHHHHHH---HHhccCCccEEEECCCCCEEeccCCcCCCcc
Confidence 9999999999999999999998 5667889999999999999999988775543
No 3
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=99.86 E-value=9e-23 Score=170.10 Aligned_cols=71 Identities=61% Similarity=0.881 Sum_probs=68.1
Q ss_pred ChhHHHHHHHcCCCCCCchHHHHHHHHHccChHh-----------------HHHHHHHHHHHhhcccchhhhccCccCCC
Q 011246 1 MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEG-----------------VARIIDDTYRKMQISEAADLAIMGQSGLD 63 (490)
Q Consensus 1 ~~eL~~~L~~~g~~k~G~K~~L~~r~l~ll~~~~-----------------~~~~i~~~y~~~~~~~~~~~~~~~~~~~~ 63 (490)
||||||+|++||||||||||+||||||+||+|++ |+++|+|+|||||+++++++||++|..++
T Consensus 22 ikelkdvl~~lgl~kqgkKqdL~Dril~llsd~q~~~~~~~~~K~~v~kE~vaKIVDDtYRKMqvSgAtDLASk~q~~sd 101 (110)
T 2rno_A 22 IKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRKNSLTKEAVAKIVDDTYRKMQIQCAPDLATRSHSGSD 101 (110)
T ss_dssp HHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHSSCCTTSCCCSTTGGGSHHHHHHHHHHHHHHHHCTTCCCSCTTCSSCSS
T ss_pred HHHHHHHHHHhCCcccCccHHHHHHHHHHcCHHHhcccccccccccccHHHHHHHHHHHHHHHhccCCccccccCccccC
Confidence 6999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred ccccccccc
Q 011246 64 ICNVKVEME 72 (490)
Q Consensus 64 ~~~~~~~~~ 72 (490)
++ +++++|
T Consensus 102 ~s-~k~k~E 109 (110)
T 2rno_A 102 FS-FRPIEE 109 (110)
T ss_dssp SC-SCCCTT
T ss_pred cc-cccCCC
Confidence 97 888776
No 4
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.46 E-value=2.5e-14 Score=113.78 Aligned_cols=66 Identities=48% Similarity=1.025 Sum_probs=57.0
Q ss_pred cccCCCCceeccCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceeccCC
Q 011246 75 DSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRAD 141 (490)
Q Consensus 75 ~~~~~~~~~rCiCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~~d 141 (490)
++.+++..+||+||.....+.||+|++.+|+.|||..||++..++... ...|++|||+.||+.|+|
T Consensus 3 d~~~~e~~v~C~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~-~~~p~~~~C~~Cr~~r~D 68 (68)
T 2rsd_A 3 DSFQPEAKVRCICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGES-AEVPPVFYCELCRLSRAD 68 (68)
T ss_dssp SCCCSSCEECCTTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSC-CCCCSSCCCHHHHHHHTC
T ss_pred CCcCCCCCEEeECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccc-cCCCCcEECcCccCcccC
Confidence 467778999999999888899999997789999999999998766433 357889999999999876
No 5
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=99.41 E-value=8.3e-14 Score=107.58 Aligned_cols=47 Identities=30% Similarity=0.461 Sum_probs=44.5
Q ss_pred ChhHHHHHHHcCCCCCCchHHHHHHHHHccChHh---HHHHHHHHHHHhh
Q 011246 1 MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEG---VARIIDDTYRKMQ 47 (490)
Q Consensus 1 ~~eL~~~L~~~g~~k~G~K~~L~~r~l~ll~~~~---~~~~i~~~y~~~~ 47 (490)
|+|||.+|+++|+||+|||+||+.|+|.||...+ |+.+|+|+|++|+
T Consensus 16 VsELq~LLg~~gr~KsGrK~eL~~RaL~LL~~~~s~~v~~KIrELy~~r~ 65 (65)
T 1v66_A 16 VSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRF 65 (65)
T ss_dssp HHHHHHHHHTTCCCCCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCcCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999999887 9999999999874
No 6
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.36 E-value=2.9e-13 Score=110.42 Aligned_cols=71 Identities=46% Similarity=0.939 Sum_probs=60.3
Q ss_pred ccccccCCCCceeccCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceeccCCc
Q 011246 72 EAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADP 142 (490)
Q Consensus 72 ~~~~~~~~~~~~rCiCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~~dP 142 (490)
+.+++..++..++|+|+.....++||+|+++.|..|||..||++..+++++.+..|.+|||+.|+..+.+|
T Consensus 6 ~~dd~~~~~~~~~CiC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 6 SGEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp CCCCSSSCCCCCCCSSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred ccccccCCCCCEEeECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCC
Confidence 34566777899999999997789999999666999999999999987765455688999999999987654
No 7
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.88 E-value=1.2e-09 Score=92.75 Aligned_cols=53 Identities=30% Similarity=0.627 Sum_probs=46.6
Q ss_pred CCCceeccCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceecc
Q 011246 79 LGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (490)
Q Consensus 79 ~~~~~rCiCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~ 139 (490)
.+..+||+|+.....+.||+|+. |..|+|..|++++... .|+.|+|+.|+...
T Consensus 25 ~~d~vrCiC~~~~~~~~mi~Cd~--C~~w~H~~C~~~~~~~------~p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 25 GTDVTRCICGFTHDDGYMICCDK--CSVWQHIDCMGIDRQH------IPDTYLCERCQPRN 77 (98)
T ss_dssp CCCBCCCTTSCCSCSSCEEEBTT--TCBEEETTTTTCCTTS------CCSSBCCTTTSSSC
T ss_pred CCCCEEeECCCccCCCcEEEcCC--CCCcCcCcCCCCCccC------CCCCEECCCCcCCC
Confidence 36789999999888899999999 9999999999987554 57899999998765
No 8
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=98.87 E-value=5.8e-10 Score=83.84 Aligned_cols=50 Identities=28% Similarity=0.689 Sum_probs=43.4
Q ss_pred CCceeccCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceeccccee
Q 011246 80 GGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 137 (490)
Q Consensus 80 ~~~~rCiCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl 137 (490)
.+.++|+|+.....+.||+|+. |+.|+|..|+++...+ .|+.|+|+.|+.
T Consensus 2 ~d~~~C~C~~~~~~~~MI~Cd~--C~~W~H~~Cvgi~~~~------~~~~~~C~~C~~ 51 (52)
T 3o7a_A 2 WDLVTCFCMKPFAGRPMIECNE--CHTWIHLSCAKIRKSN------VPEVFVCQKCRD 51 (52)
T ss_dssp TTCBCSTTCCBCTTCCEEECTT--TCCEEETTTTTCCGGG------CCSSCCCHHHHT
T ss_pred CcCeEEEeCCcCCCCCEEEcCC--CCccccccccCCCccc------CCCcEECcCCCC
Confidence 4678999999777679999999 9999999999998653 578999999974
No 9
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.85 E-value=1.2e-09 Score=86.82 Aligned_cols=53 Identities=28% Similarity=0.714 Sum_probs=45.8
Q ss_pred CCCCceeccCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceec
Q 011246 78 NLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (490)
Q Consensus 78 ~~~~~~rCiCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~ 138 (490)
.+...++|+|+.....+.||+|+. |..|+|..|+++...+ .|+.|+|+.|+..
T Consensus 15 ~~~~~~~CiC~~~~~~~~MIqCd~--C~~WfH~~Cvgi~~~~------~~~~~~C~~C~~s 67 (68)
T 3o70_A 15 YFQGLVTCFCMKPFAGRPMIECNE--CHTWIHLSCAKIRKSN------VPEVFVCQKCRDS 67 (68)
T ss_dssp TTTTCCCSTTCCCCTTCCEEECTT--TCCEEETTTTTCCTTS------CCSSCCCHHHHTC
T ss_pred CCCCceEeECCCcCCCCCEEECCC--CCccccccccCcCccc------CCCcEECCCCCCC
Confidence 456789999999877778999999 9999999999998654 5789999999754
No 10
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.81 E-value=1.9e-09 Score=106.18 Aligned_cols=75 Identities=20% Similarity=0.408 Sum_probs=68.0
Q ss_pred eeeeeceEEeecCCCCccccccccCCCCcCcccccCHHHHHHHHcCCCeeecCC--CCCCCCCCCeeecHHHHHHHHHH
Q 011246 320 EIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPI--CMKNYSLEDLIIDPYFHRITTMM 396 (490)
Q Consensus 320 eIv~~s~~vsL~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~~~~~W~CPi--C~k~~~~~~L~ID~y~~~il~~l 396 (490)
||++++..++|+|||++..|+.||++..|.|. |+...+..+-+..+.|.||+ |.+.+...+|+.|..+.++++..
T Consensus 172 DI~v~~~~~el~CPIcl~~f~DPVts~~CGHs--FcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 172 DLQIEGGKIELTCPITCKPYEAPLISRKCNHV--FDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIA 248 (267)
T ss_dssp CCCCCSSBCCSBCTTTSSBCSSEEEESSSCCE--EEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHH
T ss_pred cceecCCceeeECcCccCcccCCeeeCCCCCc--ccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHH
Confidence 46678889999999999999999999999996 99999999887778899999 99999999999999998877643
No 11
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.70 E-value=5.7e-09 Score=83.55 Aligned_cols=54 Identities=31% Similarity=0.564 Sum_probs=45.0
Q ss_pred CCCceeccCCCCCCC-CCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceecc
Q 011246 79 LGGKIFCPCGTSLPS-ESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (490)
Q Consensus 79 ~~~~~rCiCg~s~~~-~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~ 139 (490)
.+..++|+|+..... ..||+|+. |..|+|..||++...+ ..|..|+|+.|+..+
T Consensus 13 ~~~~~~C~C~~~~~~g~~mI~Cd~--C~~W~H~~Cvg~~~~~-----~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 13 DNWKVDCKCGTKDDDGERMLACDG--CGVWHHTRCIGINNAD-----ALPSKFLCFRCIELS 67 (72)
T ss_dssp CSSEECCTTCCCSCCSSCEEECSS--SCEEEETTTTTCCTTS-----CCCSCCCCHHHHHHC
T ss_pred CCcceEeeCCCccCCCCcEEECCC--CCCccCCeeeccCccc-----cCCCcEECCCccCCC
Confidence 356899999997654 47999999 9999999999998643 357999999998764
No 12
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.59 E-value=1.4e-08 Score=82.77 Aligned_cols=59 Identities=22% Similarity=0.386 Sum_probs=47.6
Q ss_pred CCCceeccCCCCCC-CCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceeccCCcc
Q 011246 79 LGGKIFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPF 143 (490)
Q Consensus 79 ~~~~~rCiCg~s~~-~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~~dPF 143 (490)
+...++|+|+.... .+.||+|+. |..|+|..|+++...+. ..++.|+|+.|+..+..++
T Consensus 9 ~~~~~~C~C~~~~d~~~~MIqCd~--C~~WfH~~Cvgl~~~~~----~~~~~~~C~~C~~~~~~~~ 68 (79)
T 1wep_A 9 ALVPVYCLCRQPYNVNHFMIECGL--CQDWFHGSCVGIEEENA----VDIDIYHCPDCEAVFGPSI 68 (79)
T ss_dssp CCCCCCSTTSCSCCSSSCEEEBTT--TCCEEEHHHHTCCHHHH----TTCSBBCCTTTTTTSCSCB
T ss_pred cCCccEEEcCCccCCCCceEEcCC--CCCcEEeeecCcccccc----cCCCeEECCCcccccCCCc
Confidence 45688999999764 789999999 99999999999976432 2368999999998764433
No 13
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.57 E-value=4.4e-09 Score=84.96 Aligned_cols=57 Identities=23% Similarity=0.405 Sum_probs=45.7
Q ss_pred CceeccCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceecc
Q 011246 81 GKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (490)
Q Consensus 81 ~~~rCiCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~ 139 (490)
..++|+|+.....+.||+|+. |..|+|..||++...+...+...+..|+|+.|+..+
T Consensus 15 ~~~~C~C~~~~~~~~MI~Cd~--C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 15 NALYCICRQPHNNRFMICCDR--CEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TCCCSTTCCCCCSSCEEECSS--SCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCEEECCCccCCCCEEEeCC--CCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 469999999877779999998 999999999999765432222246899999998753
No 14
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=98.57 E-value=9.5e-09 Score=82.92 Aligned_cols=58 Identities=21% Similarity=0.433 Sum_probs=46.4
Q ss_pred CCceeccCCCCC-CCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceeccCCcc
Q 011246 80 GGKIFCPCGTSL-PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPF 143 (490)
Q Consensus 80 ~~~~rCiCg~s~-~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~~dPF 143 (490)
...++|+|+... +.+.||+|+. |..|+|..|+++...+++ .++.|+|+.|+....-++
T Consensus 8 ~~~~yCiC~~~~~~~~~MI~Cd~--C~~WfH~~Cvg~~~~~~~----~~~~~~C~~C~~~~~~~~ 66 (75)
T 3kqi_A 8 TVPVYCVCRLPYDVTRFMIECDA--CKDWFHGSCVGVEEEEAP----DIDIYHCPNCEKTHGKST 66 (75)
T ss_dssp CCCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCTTTGG----GBSSCCCHHHHHHHCCCC
T ss_pred CCeeEEECCCcCCCCCCEEEcCC--CCCCEecccccccccccC----CCCEEECCCCcccCCCCe
Confidence 467899999875 3689999999 999999999999876522 247899999988753333
No 15
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.53 E-value=3.3e-08 Score=77.10 Aligned_cols=55 Identities=29% Similarity=0.434 Sum_probs=45.3
Q ss_pred CCCceec-cCCCCC-CCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceecc
Q 011246 79 LGGKIFC-PCGTSL-PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (490)
Q Consensus 79 ~~~~~rC-iCg~s~-~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~ 139 (490)
++...+| +|+... +.+.||+|+. |..|+|..|+++...++ ..+..|+|+.|+.++
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~--C~~WfH~~Cvgl~~~~~----~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDL--CEMWFHGKCVKITPARA----EHIKQYKCPSCSNKS 59 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSS--SCCEEETTTTTCCTTGG----GGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccC--CCCCCCccccCcChhHh----cCCCcEECCCCcCcC
Confidence 3567889 999876 4689999998 99999999999986642 235899999998765
No 16
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.48 E-value=1.6e-07 Score=78.61 Aligned_cols=64 Identities=22% Similarity=0.486 Sum_probs=49.5
Q ss_pred ccccccccccCCCCceeccCCCCCCCCCeeeeeCCCcC-ccccccccccCCCCCccccCCCCceecccceecc
Q 011246 68 KVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (490)
Q Consensus 68 ~~~~~~~~~~~~~~~~rCiCg~s~~~~~mIqC~~~~C~-v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~ 139 (490)
.|......+..++...+|+|+... .+.||+|++..|. .|+|..||++...+ +.+|||+.|+..+
T Consensus 22 ~p~~~~~~~~d~~e~~yCiC~~~~-~g~MI~CD~~dC~~~WfH~~CVgl~~~p-------~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 22 HPSDVLDMPVDPNEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQES 86 (91)
T ss_dssp CCCCCCSCCCCSCCCBCSTTCCBC-CSCCCCCSCSSCSCCCCCSTTTTCSSCC-------CSSCCCTTTCCCC
T ss_pred CccccccCCcCCCCCcEEECCCCC-CCCEeEecCCCCCCCCEecccCCcCcCC-------CCCEECcCccCcC
Confidence 343344445667789999999865 4789999995565 79999999997654 3689999998754
No 17
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.24 E-value=9.4e-07 Score=70.59 Aligned_cols=56 Identities=25% Similarity=0.599 Sum_probs=44.7
Q ss_pred ccCCCCceeccCCCCCCCCCeeeeeCCCcC-ccccccccccCCCCCccccCCCCceecccceecc
Q 011246 76 SLNLGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (490)
Q Consensus 76 ~~~~~~~~rCiCg~s~~~~~mIqC~~~~C~-v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~ 139 (490)
+..+....+|+|+... .+.||.|++..|. .|+|..||++...+ ...|||+.|+..+
T Consensus 10 ~~d~~~~~~C~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvgl~~~p-------~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 10 PVDPNEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQES 66 (71)
T ss_dssp CCCTTSCCCSTTCCCS-CSSEECCSCSSCSCCCEETTTTTCSSCC-------SSCCCCTTTSSCS
T ss_pred ccCCCCCCEEECCCCC-CCCEeEeeCCCCCCccEecccCCcCcCC-------CCCEECCCCCccc
Confidence 3455678999999865 3789999996666 69999999987654 3789999998653
No 18
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.21 E-value=2.9e-07 Score=71.66 Aligned_cols=55 Identities=25% Similarity=0.597 Sum_probs=41.5
Q ss_pred cCCCCceeccCCCCCCCCCeeeeeCCCcC-ccccccccccCCCCCccccCCCCceecccceecc
Q 011246 77 LNLGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (490)
Q Consensus 77 ~~~~~~~rCiCg~s~~~~~mIqC~~~~C~-v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~ 139 (490)
..++...+|+|+... .+.||+|++..|. .|+|..|+++...+ ...|||+.|+..+
T Consensus 6 ~d~~e~~yC~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvgl~~~p-------~~~w~Cp~C~~~r 61 (62)
T 2g6q_A 6 IDPNEPTYCLCNQVS-YGEMIGCDNEQCPIEWFHFSCVSLTYKP-------KGKWYCPKCRGDN 61 (62)
T ss_dssp ----CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHTCC
T ss_pred cCCCCCcEEECCCCC-CCCeeeeeCCCCCcccEecccCCcCcCC-------CCCEECcCcccCC
Confidence 345678999999853 4789999994444 89999999997654 3799999998654
No 19
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.20 E-value=3.9e-07 Score=70.24 Aligned_cols=52 Identities=27% Similarity=0.613 Sum_probs=41.4
Q ss_pred CCCceeccCCCCCCCCCeeeeeCCCcC-ccccccccccCCCCCccccCCCCceecccceec
Q 011246 79 LGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (490)
Q Consensus 79 ~~~~~rCiCg~s~~~~~mIqC~~~~C~-v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~ 138 (490)
+....+|+|+... .+.||+|++..|. .|+|..|+++...+ ...|||+.|+.+
T Consensus 6 ~~e~~yC~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvgl~~~p-------~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 6 SNEPTYCLCHQVS-YGEMIGCDNPDCPIEWFHFACVDLTTKP-------KGKWFCPRCVQE 58 (59)
T ss_dssp --CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHCC
T ss_pred CCCCcEEECCCCC-CCCeeEeeCCCCCCCCEecccCCcccCC-------CCCEECcCccCc
Confidence 4577899999854 4789999996666 69999999987654 268999999764
No 20
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=6.8e-07 Score=71.22 Aligned_cols=50 Identities=22% Similarity=0.494 Sum_probs=41.5
Q ss_pred CCCceeccCCCCCCCCCeeeeeCCCcC---ccccccccccCCCCCccccCCCCceecccceec
Q 011246 79 LGGKIFCPCGTSLPSESKIQCVDPRCL---VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (490)
Q Consensus 79 ~~~~~rCiCg~s~~~~~mIqC~~~~C~---v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~ 138 (490)
++..++|+|+... .+.||+|++ |+ .|+|..||++...+ ...|||+.|+..
T Consensus 3 ~~~~~yC~C~~~~-~g~MI~CD~--cdC~~~WfH~~Cvgl~~~p-------~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 3 SGSSGYCICNQVS-YGEMVGCDN--QDCPIEWFHYGCVGLTEAP-------KGKWYCPQCTAA 55 (70)
T ss_dssp CSCCCCSTTSCCC-CSSEECCSC--TTCSCCCEEHHHHTCSSCC-------SSCCCCHHHHHH
T ss_pred CCCCeEEEcCCCC-CCCEeEeCC--CCCCccCCcccccccCcCC-------CCCEECCCCCcc
Confidence 4577899999863 579999999 74 89999999997653 479999999764
No 21
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.10 E-value=7.3e-07 Score=68.89 Aligned_cols=55 Identities=27% Similarity=0.637 Sum_probs=40.3
Q ss_pred cCCCCceeccCCCCCCCCCeeeeeCCCcC-ccccccccccCCCCCccccCCCCceecccceecc
Q 011246 77 LNLGGKIFCPCGTSLPSESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (490)
Q Consensus 77 ~~~~~~~rCiCg~s~~~~~mIqC~~~~C~-v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~ 139 (490)
..++...+|+|+... .+.||.|++..|. .|+|..|+++...+ ...|||+.|+.+|
T Consensus 5 ~d~~e~~~C~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvgl~~~p-------~g~w~C~~C~~~r 60 (60)
T 2vnf_A 5 VDPNEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQER 60 (60)
T ss_dssp ----CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHC--
T ss_pred cCCCCCCEEECCCcC-CCCEEEeCCCCCCCceEehhcCCCCcCC-------CCCEECcCccCcC
Confidence 345678999999864 4789999994454 79999999987654 3789999997653
No 22
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=98.01 E-value=7.5e-07 Score=95.25 Aligned_cols=57 Identities=23% Similarity=0.428 Sum_probs=46.7
Q ss_pred cCCCCceeccCCCCC-CCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceecc
Q 011246 77 LNLGGKIFCPCGTSL-PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (490)
Q Consensus 77 ~~~~~~~rCiCg~s~-~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~ 139 (490)
-++...++|+|+... +.+.||+|+. |..|+|..|+++...+. ..++.|+|+.|+...
T Consensus 32 ~~~~~~~yC~C~~~~d~~~~MIqCd~--C~~WfH~~Cvgl~~~~~----~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 32 PPPPPPVYCVCRQPYDVNRFMIECDI--CKDWFHGSCVGVEEHHA----VDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCCCCEETTTTEECCTTSCEEEBTT--TCCEEEHHHHTCCGGGG----GGEEEBCCHHHHHHH
T ss_pred cCCCCCeEEeCCCcCCCCCCeEEccC--CCCceeeeecCcCcccc----cCCCEEECCCCcCCc
Confidence 345678999999864 4789999999 99999999999986642 235799999998764
No 23
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=97.95 E-value=2.8e-06 Score=68.11 Aligned_cols=52 Identities=29% Similarity=0.496 Sum_probs=42.3
Q ss_pred CCceec-cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceec
Q 011246 80 GGKIFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (490)
Q Consensus 80 ~~~~rC-iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~ 138 (490)
....+| +|+.....+.||+|+. |..|+|..|++++..+. ....|+|+.|+..
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~--C~~wfH~~Cv~~~~~~~-----~~~~w~C~~C~~~ 68 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDD--CDDWYHWPCVGIMAAPP-----EEMQWFCPKCANK 68 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSS--SSSEEEHHHHTCSSCCC-----SSSCCCCTTTHHH
T ss_pred CCCcCCCCCCCCCCCCCEEEcCC--CCcccccccCCCCccCC-----CCCCEEChhccCc
Confidence 456789 8998766568999999 99999999999986542 1368999999764
No 24
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.92 E-value=1.1e-06 Score=81.33 Aligned_cols=56 Identities=27% Similarity=0.462 Sum_probs=43.9
Q ss_pred CCCCceeccCCCCC-CCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceecc
Q 011246 78 NLGGKIFCPCGTSL-PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (490)
Q Consensus 78 ~~~~~~rCiCg~s~-~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~ 139 (490)
.++...+|+|+... +.+.||+|+. |..|+|..|+++...+ ...++.|+|+.|+...
T Consensus 4 ~~~~~~~C~C~~~~~~~~~mi~Cd~--C~~WfH~~Cv~~~~~~----~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 4 GSDTKLYCICKTPEDESKFYIGCDR--CQNWYHGRCVGILQSE----AELIDEYVCPQCQSTE 60 (174)
T ss_dssp ---CCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCHHH----HTTCSSCCCHHHHHHH
T ss_pred CCCCCcEeeCCCCCCCCCCEeECCC--CCchhChhhcCCchhh----ccCccCeecCCCcchh
Confidence 34678899999864 4788999998 9999999999986432 1246899999999864
No 25
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.90 E-value=1.6e-06 Score=64.98 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=36.1
Q ss_pred eccCCCCCC-CCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccce
Q 011246 84 FCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 136 (490)
Q Consensus 84 rCiCg~s~~-~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Cr 136 (490)
.|+|+.... ...||+|++ .|..|+|..|+++...+. .+..|+|+.|+
T Consensus 5 cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvgl~~~~~-----~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVGVSPEMA-----ENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTT-TTCCEEETTTTTCCHHHH-----HHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCC-CCCccCcccccCCCcccc-----CCCCEECCCCC
Confidence 467877653 678999993 399999999999975431 23789999986
No 26
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.87 E-value=6.1e-06 Score=68.84 Aligned_cols=50 Identities=20% Similarity=0.515 Sum_probs=39.2
Q ss_pred cCCCCceeccCCCCCCCCCeeeeeCCCcC---ccccccccccCCCCCccccCCCCceeccc-ce
Q 011246 77 LNLGGKIFCPCGTSLPSESKIQCVDPRCL---VQQHISCVIIPEKPMEEIRLLPPLFFCET-CR 136 (490)
Q Consensus 77 ~~~~~~~rCiCg~s~~~~~mIqC~~~~C~---v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~-Cr 136 (490)
..++..++|+|+... .+.||.|++ |+ .|+|..||++...+ ...|||+. |+
T Consensus 21 ~~~~~~~yCiC~~~~-~g~MI~CD~--c~C~~eWfH~~CVgl~~~p-------~~~W~Cp~cC~ 74 (90)
T 2jmi_A 21 NNNQEEVYCFCRNVS-YGPMVACDN--PACPFEWFHYGCVGLKQAP-------KGKWYCSKDCK 74 (90)
T ss_dssp ---CCSCCSTTTCCC-SSSEECCCS--SSCSCSCEETTTSSCSSCT-------TSCCCSSHHHH
T ss_pred CCCCCCcEEEeCCCC-CCCEEEecC--CCCccccCcCccCCCCcCC-------CCCccCChhhc
Confidence 345678999999754 368999999 66 89999999997654 26899999 96
No 27
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=97.79 E-value=1.9e-06 Score=91.07 Aligned_cols=54 Identities=24% Similarity=0.483 Sum_probs=44.2
Q ss_pred CCceeccCCCCC-CCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceecc
Q 011246 80 GGKIFCPCGTSL-PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (490)
Q Consensus 80 ~~~~rCiCg~s~-~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~ 139 (490)
...++|+|+... +.+.||+|+. |..|+|..|+++...+. ..++.|+|+.|+...
T Consensus 3 ~~~~yCiC~~~~d~~~~MIqCD~--C~~WfH~~CVgi~~~~~----~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 3 SVPVYCLCRLPYDVTRFMIECDM--CQDWFHGSCVGVEEEKA----ADIDLYHCPNCEVLH 57 (447)
T ss_dssp CCCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCHHHH----TTEEECCCHHHHHHH
T ss_pred CCCeEEeCCCcCCCCCCeEEcCC--CCcccccccCCcCcccc----cCCCEEECCCCcccc
Confidence 356899999864 4789999999 99999999999975431 234799999998875
No 28
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.32 E-value=0.00015 Score=60.20 Aligned_cols=69 Identities=25% Similarity=0.503 Sum_probs=56.5
Q ss_pred EeecCCCCccccccccCCCCcCcccccCHHHHHHHHc----CCCeeecCC--CCCC-CCCCCeeecHHHHHHHHHHhc
Q 011246 328 VNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQ----RTRKWQCPI--CMKN-YSLEDLIIDPYFHRITTMMRN 398 (490)
Q Consensus 328 vsL~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~----~~~~W~CPi--C~k~-~~~~~L~ID~y~~~il~~l~~ 398 (490)
..|.|||++..|+-|+....|.|. |+.......-. ......||+ |.+. +...+|+.|..+.++++....
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~--f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHT--YEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCE--EEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred cEeECcCcCchhcCCEEcCCCCCe--ecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence 357899999999999998889998 88776655432 235789999 8877 889999999999998876643
No 29
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=97.21 E-value=3.5e-05 Score=72.30 Aligned_cols=55 Identities=24% Similarity=0.546 Sum_probs=39.7
Q ss_pred eec-cCCCCCCC----CCeeeeeCCCcCccccccccccCCCCCccccCCCC--ceecccceecc
Q 011246 83 IFC-PCGTSLPS----ESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPP--LFFCETCRIKR 139 (490)
Q Consensus 83 ~rC-iCg~s~~~----~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~--~f~C~~Crl~~ 139 (490)
..| +|+..... +.||+|+. |..|.|..|+++.....+-+...|+ .|+|+.|+...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~--C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGK--CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTT--TCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCC--CCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 357 49886543 35999999 9999999999997532222222343 89999999874
No 30
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=97.13 E-value=0.00023 Score=53.97 Aligned_cols=32 Identities=38% Similarity=0.526 Sum_probs=29.1
Q ss_pred ChhHHHHHHHcCCCCCCchHHHHHHHHHccCh
Q 011246 1 MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSD 32 (490)
Q Consensus 1 ~~eL~~~L~~~g~~k~G~K~~L~~r~l~ll~~ 32 (490)
|.|||+.|..-||+.+|+|++|++|+.+.+..
T Consensus 15 V~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 15 LAELKQECLARGLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp HHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 47999999999999999999999999987653
No 31
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.00036 Score=60.27 Aligned_cols=47 Identities=28% Similarity=0.278 Sum_probs=36.8
Q ss_pred ChhHHHHHHHcCCCCCCchHHHHHHHHHccChHh---------HHHHHHHHHHHhh
Q 011246 1 MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEG---------VARIIDDTYRKMQ 47 (490)
Q Consensus 1 ~~eL~~~L~~~g~~k~G~K~~L~~r~l~ll~~~~---------~~~~i~~~y~~~~ 47 (490)
+.|||++|.+.||+-+|+|+||++||.+.|.... +.++..=+|+..+
T Consensus 42 VaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~~~g~~D~~rl~ai~~lI~~~~~ 97 (114)
T 2rnn_A 42 VSELKDICRSVSFPVSGRKAVLQDLIRNFLQNALVVGKSDPYRVQAVKFLIERIRK 97 (114)
T ss_dssp HHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHhc
Confidence 4699999999999999999999999999875433 4454444555553
No 32
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.08 E-value=0.00026 Score=57.83 Aligned_cols=66 Identities=11% Similarity=-0.008 Sum_probs=54.2
Q ss_pred eEEeecCCCCccccccccCCCCcCcccccCHHHHHHHHcCCCeeecCCCCCCCCCCCeeecHHHHHHHHHH
Q 011246 326 IIVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMM 396 (490)
Q Consensus 326 ~~vsL~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~~~L~ID~y~~~il~~l 396 (490)
+.-.+.|||+...|+-|+... |.|. |+.......-.. ...||+|+..+...+|+.+..+.++++..
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~-cGht--f~r~~I~~~l~~--~~~cP~~~~~l~~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLP-SGTV--MDRSIILRHLLN--SPTDPFNRQMLTESMLEPVPELKEQIQAW 76 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECT-TSCE--EEHHHHHHHHHH--CSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CchheECcccCchhcCCeECC-CCCE--ECHHHHHHHHhc--CCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence 344689999999999999987 9998 887776554432 36899999999999999999998887644
No 33
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=97.04 E-value=0.00031 Score=52.20 Aligned_cols=32 Identities=34% Similarity=0.591 Sum_probs=29.4
Q ss_pred ChhHHHHHHHcCCCCCCchHHHHHHHHHccCh
Q 011246 1 MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSD 32 (490)
Q Consensus 1 ~~eL~~~L~~~g~~k~G~K~~L~~r~l~ll~~ 32 (490)
|.|||+.|.+-||+.+|+|++|++|+.+.+..
T Consensus 15 V~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~~ 46 (50)
T 1zrj_A 15 VNELREELQRRGLDTRGLKAELAERLQAALSG 46 (50)
T ss_dssp HHHHHHHHHHTTCCCCSCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 46999999999999999999999999988764
No 34
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=96.99 E-value=8.9e-05 Score=63.42 Aligned_cols=52 Identities=17% Similarity=0.451 Sum_probs=38.8
Q ss_pred cCCCCC-CCCCeeeee-CCCcCccccccccccCCCCCccc-cCCCCceecccceecc
Q 011246 86 PCGTSL-PSESKIQCV-DPRCLVQQHISCVIIPEKPMEEI-RLLPPLFFCETCRIKR 139 (490)
Q Consensus 86 iCg~s~-~~~~mIqC~-~~~C~v~qH~~Cv~~~~k~~~~~-p~~p~~f~C~~Crl~~ 139 (490)
+|+... +.+.||+|+ . |..|+|..||++.....+.+ ++-...|+|+.|+...
T Consensus 8 iC~~p~~~~~~mi~Cdd~--C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 8 ACRSEVNDDQDAILCEAS--CQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp TTCSBCCTTSCEEECTTT--TCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCccCCCCCEEEecCC--cccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 576653 457899999 6 99999999999986443332 1234799999999764
No 35
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.89 E-value=0.0011 Score=55.61 Aligned_cols=66 Identities=8% Similarity=-0.016 Sum_probs=54.1
Q ss_pred eEEeecCCCCccccccccCCCCcC-cccccCHHHHHHHHcCCCeeecCCCCCCCCCCCeeecHHHHHHHHHH
Q 011246 326 IIVNLRCPMSGSRIRVAGRFKPCV-HTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMM 396 (490)
Q Consensus 326 ~~vsL~CPls~~ri~~P~R~~~C~-HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~~~L~ID~y~~~il~~l 396 (490)
+.-.+.|||+...|+-||... |. |. ||.......-.. ...||+|++.+...+|+-+..+.++++..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~-cG~ht--f~r~cI~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLP-SSRVT--VDRSTIARHLLS--DQTDPFNRSPLTMDQIRPNTELKEKIQRW 85 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECT-TTCCE--EEHHHHHHHTTT--SCBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred CcHhcCCcCccccccCCeECC-CCCeE--ECHHHHHHHHHh--CCCCCCCCCCCChhhceEcHHHHHHHHHH
Confidence 344678999999999999964 66 97 887776665443 45899999999999999999998887654
No 36
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=96.88 E-value=8.9e-05 Score=58.06 Aligned_cols=52 Identities=19% Similarity=0.383 Sum_probs=36.8
Q ss_pred eeccCCCCC-CCCCeeeee-CCCcCccccccccccCCCCCcccc-CCCCceecccce
Q 011246 83 IFCPCGTSL-PSESKIQCV-DPRCLVQQHISCVIIPEKPMEEIR-LLPPLFFCETCR 136 (490)
Q Consensus 83 ~rCiCg~s~-~~~~mIqC~-~~~C~v~qH~~Cv~~~~k~~~~~p-~~p~~f~C~~Cr 136 (490)
.-++|+... +..+||+|+ . |..|+|..||++....++-+. +.-..|+|+.|+
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~--C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEAS--CQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTT--TCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCccCCCccCCCCCeEecccC--ccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 334677754 467899999 7 999999999999864332221 112489999885
No 37
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=96.87 E-value=0.00041 Score=55.63 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=28.7
Q ss_pred ChhHHHHHHHcCCCCCCchHHHHHHHHHccCh
Q 011246 1 MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSD 32 (490)
Q Consensus 1 ~~eL~~~L~~~g~~k~G~K~~L~~r~l~ll~~ 32 (490)
|.|||+.|..-||+.+|+|+|||+|+.+.+..
T Consensus 31 VaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~ 62 (75)
T 2kvu_A 31 VAELKQELKLRSLPVSGTKTELIERLRAYQDQ 62 (75)
T ss_dssp HHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 47999999999999999999999999876543
No 38
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=96.87 E-value=0.00065 Score=50.65 Aligned_cols=31 Identities=39% Similarity=0.544 Sum_probs=27.8
Q ss_pred ChhHHHHHHHcCCCCCCchHHHHHHHHHccC
Q 011246 1 MKELKDVLTKLGLPKQGKKQDLVDRIFHQLS 31 (490)
Q Consensus 1 ~~eL~~~L~~~g~~k~G~K~~L~~r~l~ll~ 31 (490)
|.|||+.|..-||+.+|+|++||+|+.+...
T Consensus 10 V~eLK~~Lk~RGL~~~G~KadLieRL~~~~~ 40 (51)
T 1h1j_S 10 VVQLKDLLTKRNLSVGGLKNELVQRLIKDDE 40 (51)
T ss_dssp HHHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 4699999999999999999999999987543
No 39
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.76 E-value=0.00035 Score=53.76 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=43.5
Q ss_pred EeecCCCCccccccccCCCCcCcccccCHHHHHHHHcCCCeeecCCCCCCCCCCCee
Q 011246 328 VNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLI 384 (490)
Q Consensus 328 vsL~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~~~L~ 384 (490)
+++.||||+..|+-|+-...|.|. ||.++....-.+.. .||++++++..++|+
T Consensus 2 ~~~~CpIs~~~m~dPV~~~~sG~~--yer~~I~~~l~~~~--~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 2 SHMLCAISGKVPRRPVLSPKSRTI--FEKSLLEQYVKDTG--NDPITNEPLSIEEIV 54 (61)
T ss_dssp --CCCTTTCSCCSSEEEETTTTEE--EEHHHHHHHHHHHS--BCTTTCCBCCGGGCE
T ss_pred CeEEecCCCCCCCCCEEeCCCCcE--EcHHHHHHHHHhCC--CCcCCcCCCChhhcE
Confidence 478999999999999998889997 99988877654433 499999999888875
No 40
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.65 E-value=0.0016 Score=54.93 Aligned_cols=66 Identities=11% Similarity=-0.002 Sum_probs=55.4
Q ss_pred EEeecCCCCccccccccCCCCcCcccccCHHHHHHHHcCCCeeecCCCCCCCCCCCeeecHHHHHHHHHHh
Q 011246 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMR 397 (490)
Q Consensus 327 ~vsL~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~~~L~ID~y~~~il~~l~ 397 (490)
.-.+.|||+...|+-|+... |.|. ||.......-.. ...||+|+..+...+|+.+..+.++++...
T Consensus 27 p~~~~CpI~~~~m~dPV~~~-cGht--f~r~~I~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLP-SGTI--MDRSIILRHLLN--SPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp STTTBCTTTCSBCSSEEEET-TTEE--EEHHHHHHHTTS--CSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred cHhhCCcCccCcccCCeECC-CCCE--EchHHHHHHHHc--CCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 44678999999999999987 9998 888776665443 468999999999999999999988876543
No 41
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=96.52 E-value=0.0012 Score=59.82 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=29.9
Q ss_pred ChhHHHHHHHcCCCCCCchHHHHHHHHHccChH
Q 011246 1 MKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDE 33 (490)
Q Consensus 1 ~~eL~~~L~~~g~~k~G~K~~L~~r~l~ll~~~ 33 (490)
|.|||++|.+-||+.+|||+|||+||.+.|...
T Consensus 66 V~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~K 98 (151)
T 1jjr_A 66 VPMLKEACRAYGLKSGLKKQELLEALTKHFQDK 98 (151)
T ss_dssp HHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhh
Confidence 469999999999999999999999999997754
No 42
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=96.49 E-value=0.00064 Score=72.77 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=37.7
Q ss_pred CceeccCCCCC----CCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceec
Q 011246 81 GKIFCPCGTSL----PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (490)
Q Consensus 81 ~~~rCiCg~s~----~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~ 138 (490)
....+.+..+. +...||+|+. |..|+|..||++....+ ...+.|+||.|+..
T Consensus 39 ~~~~~s~kk~~~~~n~~~~mI~CD~--C~~WfH~~CVgi~~~~a----~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 39 EKPLMSKKKSHHHKKNDFQWIGCDS--CQTWYHFLCSGLEQFEY----YLYEKFFCPKCVPH 94 (528)
T ss_dssp ---CCSCCCTTTTTTSTTSEEECTT--TCCEEEGGGTTCCGGGT----TTEEECCCTTTHHH
T ss_pred hhccccccccccCCCcCCCEEECCC--CCcCCCCcCCCCChhHh----cCCCeEECcCCcCC
Confidence 34445555442 3568999999 99999999999986542 23589999999865
No 43
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.47 E-value=0.0019 Score=50.98 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=52.4
Q ss_pred eecCCCCccccccccCCCCcCcccccCHHHHHHHHcCCCeeecCCCCCCCCCCCeeecHHHHHHHHHHh
Q 011246 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMR 397 (490)
Q Consensus 329 sL~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~~~L~ID~y~~~il~~l~ 397 (490)
.|.|||....|+-|+.. .|.|. |...-....-. .....||+|++.+...+|..+..+.++++...
T Consensus 8 ~~~C~IC~~~~~~Pv~~-~CgH~--fc~~Ci~~~~~-~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIV-STGQT--YERSSIQKWLD-AGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp SSSCTTTSCCCSSEEEE-TTTEE--EEHHHHHHHHT-TTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cCCCCCccccccCCEEc-CCCCe--ecHHHHHHHHH-HCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 56899999999999986 69998 66666555443 24678999999999999999998888876553
No 44
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.43 E-value=0.003 Score=51.48 Aligned_cols=67 Identities=21% Similarity=0.395 Sum_probs=51.9
Q ss_pred eecCCCCccccccccCCCCcCcccccCH-HHHHHHHcCCCeeecCCCCCCC-CCCCeeecHHHHHHHHHHhc
Q 011246 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNY-SLEDLIIDPYFHRITTMMRN 398 (490)
Q Consensus 329 sL~CPls~~ri~~P~R~~~C~HlQCFDl-~~fL~~~~~~~~W~CPiC~k~~-~~~~L~ID~y~~~il~~l~~ 398 (490)
.|.|||-...|..|+.-..|.|.=|..- ..|+. ......||+|.+.+ ...+|..+..+.++++.+..
T Consensus 13 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 13 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALL---ESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp TTEETTTTEECSSCEECTTTCCEECHHHHHHHHH---HCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred CCCCCCCChhhcCceECCCCCCHHHHHHHHHHHH---hcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence 4689999999999998766999855532 33433 33457999999997 68899999999999876643
No 45
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.16 E-value=0.0035 Score=58.47 Aligned_cols=66 Identities=18% Similarity=0.111 Sum_probs=54.2
Q ss_pred EEeecCCCCccccccccCCCCcCcccccCHHHHHHHHcCCCeeecCCCCCCCCCCCeeecHHHHHHHHHH
Q 011246 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMM 396 (490)
Q Consensus 327 ~vsL~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~~~L~ID~y~~~il~~l 396 (490)
.-.+.||||+..|+-||.. .|.|. ||-......-..... .||+|+.++...+|+-+..+..+++..
T Consensus 104 p~~f~CPI~~elm~DPV~~-~~Ght--fer~~I~~~l~~~~~-tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 104 PDYLCGKISFELMREPCIT-PSGIT--YDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp CGGGBCTTTCSBCSSEEEC-TTSCE--EEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred cHhhcccCccccCCCCeEC-CCCCE--ECHHHHHHHHHhCCC-CCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 3467899999999999998 69997 888877665443333 699999999999999999998887654
No 46
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=96.09 E-value=0.002 Score=51.21 Aligned_cols=50 Identities=24% Similarity=0.436 Sum_probs=38.8
Q ss_pred eccCCCC--CCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceeccCCc
Q 011246 84 FCPCGTS--LPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADP 142 (490)
Q Consensus 84 rCiCg~s--~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~~dP 142 (490)
-.+|+.. ...+.||.|+. |..+.|..|++++.- |+ ..+||+.|+..+..|
T Consensus 19 C~vC~~~~s~~~~~ll~CD~--C~~~~H~~Cl~~~~v-----P~--g~W~C~~C~~~~~~p 70 (71)
T 2ku3_A 19 CSICMDGESQNSNVILFCDM--CNLAVHQECYGVPYI-----PE--GQWLCRHCLQSRARP 70 (71)
T ss_dssp CSSSCCCCCCSSSCEEECSS--SCCEEEHHHHTCSSC-----CS--SCCCCHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCEEECCC--CCCccccccCCCCcC-----CC--CCcCCccCcCcCccC
Confidence 3368764 36789999999 999999999998742 22 589999998876444
No 47
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=96.06 E-value=0.0029 Score=46.56 Aligned_cols=45 Identities=20% Similarity=0.394 Sum_probs=35.1
Q ss_pred cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceeccccee
Q 011246 86 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 137 (490)
Q Consensus 86 iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl 137 (490)
+|+.....+.||.|+. |..|.|..|+..+.. .+|. ..++|+.|+.
T Consensus 5 vC~~~~~~~~ll~Cd~--C~~~~H~~Cl~p~l~---~~P~--g~W~C~~C~~ 49 (51)
T 1f62_A 5 VCRKKGEDDKLILCDE--CNKAFHLFCLRPALY---EVPD--GEWQCPACQP 49 (51)
T ss_dssp TTCCSSCCSCCEECTT--TCCEECHHHHCTTCC---SCCS--SCCSCTTTSC
T ss_pred CCCCCCCCCCEEECCC--CChhhCcccCCCCcC---CCCC--CcEECcCccc
Confidence 5887666778999999 999999999986433 2232 5899999974
No 48
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.04 E-value=0.0026 Score=52.93 Aligned_cols=52 Identities=23% Similarity=0.517 Sum_probs=39.9
Q ss_pred CCceec-cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceec
Q 011246 80 GGKIFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (490)
Q Consensus 80 ~~~~rC-iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~ 138 (490)
.....| +|+.....+.||.|+. |..|.|..|+..+.. .+|. ..++|+.|+..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~--C~~~~H~~Cl~Ppl~---~~P~--g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDG--CDDNYHIFCLLPPLP---EIPR--GIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTT--TCCEECSSSSSSCCS---SCCS--SCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCC--CCchhccccCCCCcc---cCCC--CCcCCccCcCc
Confidence 444557 7998766678999999 999999999996543 2332 58999999765
No 49
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=95.56 E-value=0.014 Score=48.16 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=52.3
Q ss_pred EeecCCCCccccccccCCCCcCcccccCHHHHHHHHcCCCeeecCCCCCCCCCCCeeecHHHHHHHHHHhc
Q 011246 328 VNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRN 398 (490)
Q Consensus 328 vsL~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~~~L~ID~y~~~il~~l~~ 398 (490)
-.+.||+-...+..|+....|.|.-|.+ -+...-.. .-.||+|.+.+...+|..+..+.++++.++.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~--Ci~~~~~~--~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~ 87 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSL--CIRKFLSY--KTQCPTCCVTVTEPDLKNNRILDELVKSLNF 87 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHH--HHHHHHTT--CCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHH--HHHHHHHC--CCCCCCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 3568999999999999888899985543 22222222 3589999999999999999999999876654
No 50
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=95.54 E-value=0.0041 Score=51.35 Aligned_cols=54 Identities=24% Similarity=0.432 Sum_probs=40.9
Q ss_pred eec-cCCCCC--CCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceeccCCccce
Q 011246 83 IFC-PCGTSL--PSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWI 145 (490)
Q Consensus 83 ~rC-iCg~s~--~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~~dPF~~ 145 (490)
..| +|+... ..+.||.|+. |..+.|..|++++.- |. ..+||+.|......+|.+
T Consensus 26 ~~C~vC~~~~s~~~~~ll~CD~--C~~~fH~~Cl~p~~v-----P~--g~W~C~~C~~~~~~~~~~ 82 (88)
T 2l43_A 26 AVCSICMDGESQNSNVILFCDM--CNLAVHQECYGVPYI-----PE--GQWLCRHCLQSRARPALE 82 (88)
T ss_dssp CCCSSCCSSSSCSEEEEEECSS--SCCCCCHHHHTCSSC-----CS--SCCCCHHHHHHTTSCC--
T ss_pred CcCCcCCCCCCCCCCCEEECCC--CCchhhcccCCCCcc-----CC--CceECccccCccchhhhh
Confidence 344 788643 5568999999 999999999998742 22 589999999887666654
No 51
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=95.39 E-value=0.0098 Score=45.61 Aligned_cols=52 Identities=17% Similarity=0.413 Sum_probs=39.0
Q ss_pred cCCCCceec-cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceec
Q 011246 77 LNLGGKIFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (490)
Q Consensus 77 ~~~~~~~rC-iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~ 138 (490)
+.......| +|+. .+.|+.|+. |..+.|..|+..+... +| ...++|+.|+..
T Consensus 6 ~~~~~~~~C~vC~~---~g~ll~CD~--C~~~fH~~Cl~p~l~~---~p--~g~W~C~~C~~~ 58 (61)
T 2l5u_A 6 YETDHQDYCEVCQQ---GGEIILCDT--CPRAYHMVCLDPDMEK---AP--EGKWSCPHCEKE 58 (61)
T ss_dssp CSSCCCSSCTTTSC---CSSEEECSS--SSCEEEHHHHCTTCCS---CC--CSSCCCTTGGGG
T ss_pred ccCCCCCCCccCCC---CCcEEECCC--CChhhhhhccCCCCCC---CC--CCceECcccccc
Confidence 344556678 4887 468999999 9999999999986432 22 268999999754
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.35 E-value=0.0091 Score=57.69 Aligned_cols=64 Identities=19% Similarity=0.105 Sum_probs=49.6
Q ss_pred eecCCCCccccccccCCCCcCcccccCHHHHHHHHcCCCeeecCCCCCCCCCCCeeecHHHHHHHHHH
Q 011246 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMM 396 (490)
Q Consensus 329 sL~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~~~L~ID~y~~~il~~l 396 (490)
.+.|||+...|+-||... |.|. |+.......-...+ ..||+|+.++...+|+.+.-+.++++..
T Consensus 208 ~~~c~i~~~~~~dPv~~~-~gh~--f~~~~i~~~~~~~~-~~cP~~~~~~~~~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 208 YLCGKISFELMREPCITP-SGIT--YDRKDIEEHLQRVG-HFNPVTRSPLTQEQLIPNLAMKEVIDAF 271 (281)
T ss_dssp TTBCTTTCSBCSSEEECS-SCCE--EETTHHHHHHHHTC-SSCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred ccCCcCcCCHhcCCeECC-CCCE--ECHHHHHHHHHHCC-CCCcCCCCCCchhcCcccHHHHHHHHHH
Confidence 568999999999999876 9998 65555444322222 1299999999999999999999887654
No 53
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=95.35 E-value=0.0016 Score=56.52 Aligned_cols=42 Identities=26% Similarity=0.527 Sum_probs=30.6
Q ss_pred CeeeeeCCCcCccccccccccCCCCCccccCCCC--ceecccceec
Q 011246 95 SKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPP--LFFCETCRIK 138 (490)
Q Consensus 95 ~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~--~f~C~~Crl~ 138 (490)
.||+|+. |..|+|..|++++....+-++.+|. .|.|+.|...
T Consensus 1 ~mi~c~~--c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 1 SMMQCGK--CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCCSC--CSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred Ccccccc--CCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 4999999 9999999999987533222233343 6889999543
No 54
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=94.98 E-value=0.015 Score=48.32 Aligned_cols=69 Identities=20% Similarity=0.449 Sum_probs=54.3
Q ss_pred EEeecCCCCccccccccCCCCcCcccccC-HHHHHHHHcCCCeeecCCCCCCCCCCCeeecHHHHHHHHHHhcC
Q 011246 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMRNF 399 (490)
Q Consensus 327 ~vsL~CPls~~ri~~P~R~~~C~HlQCFD-l~~fL~~~~~~~~W~CPiC~k~~~~~~L~ID~y~~~il~~l~~~ 399 (490)
.-.+.|||=...+..|+.-..|.|.=|.+ +..|+... ...||+|.+.+...+|+...++.+|.+.+++.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~----~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ----RAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT----CSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC----cCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 33567999999999999878999996664 33455432 26899999999999999999998888766543
No 55
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=94.91 E-value=0.015 Score=45.15 Aligned_cols=49 Identities=24% Similarity=0.510 Sum_probs=36.5
Q ss_pred Cceec-cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceecc
Q 011246 81 GKIFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (490)
Q Consensus 81 ~~~rC-iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~ 139 (490)
....| +|+. .+.||.|+. |..++|..|++.+.. .+|. ..++|+.|...+
T Consensus 7 ~~~~C~vC~~---~g~ll~CD~--C~~~fH~~Cl~ppl~---~~P~--g~W~C~~C~~~~ 56 (66)
T 1xwh_A 7 NEDECAVCRD---GGELICCDG--CPRAFHLACLSPPLR---EIPS--GTWRCSSCLQAT 56 (66)
T ss_dssp CCCSBSSSSC---CSSCEECSS--CCCEECTTTSSSCCS---SCCS--SCCCCHHHHHTC
T ss_pred CCCCCccCCC---CCCEEEcCC--CChhhcccccCCCcC---cCCC--CCeECccccCcc
Confidence 34456 5886 367999999 999999999996533 2232 689999997653
No 56
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.88 E-value=0.017 Score=45.13 Aligned_cols=46 Identities=20% Similarity=0.480 Sum_probs=35.2
Q ss_pred eec-cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceec
Q 011246 83 IFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (490)
Q Consensus 83 ~rC-iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~ 138 (490)
.+| +|+. .+.||.|+. |..++|..|+..+... +|. ..+||+.|+..
T Consensus 13 ~~C~vC~~---~~~ll~Cd~--C~~~~H~~Cl~P~l~~---~P~--g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGD---GTDVLRCTH--CAAAFHWRCHFPAGTS---RPG--TGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSC---CTTCEECSS--SCCEECHHHHCTTTCC---CCS--SSCCCTTTTTC
T ss_pred CCcCCCCC---CCeEEECCC--CCCceecccCCCccCc---CCC--CCEECccccCC
Confidence 456 6875 467999999 9999999999866433 222 57999999764
No 57
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=94.76 E-value=0.035 Score=46.53 Aligned_cols=65 Identities=22% Similarity=0.374 Sum_probs=50.3
Q ss_pred EeecCCCCccccccccCCCCcCcccccCHHHHHHHHcCCCeeecCCCCCCCCCC----CeeecHHHHHHHHHH
Q 011246 328 VNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLE----DLIIDPYFHRITTMM 396 (490)
Q Consensus 328 vsL~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~~----~L~ID~y~~~il~~l 396 (490)
-.+.|||-...+..|+....|.|.-|.+ -+...... .-.||+|.+.+... +|..|..+.++++.+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~--Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~ 82 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKT--CIVRYLET--SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKL 82 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHH--HHHHHHTS--CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHH
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHH--HHHHHHHh--CCcCcCCCccccccCcccccCcCHHHHHHHHHH
Confidence 3567999999999999988999985544 33332222 27899999998876 899999999988765
No 58
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=94.57 E-value=0.018 Score=52.11 Aligned_cols=70 Identities=26% Similarity=0.459 Sum_probs=53.6
Q ss_pred ceEEeecCCCCccccccccCCCCcCcccccCH-HHHHHHHcCCCeeecCCCCCCCC-CCCeeecHHHHHHHHHHhc
Q 011246 325 SIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYS-LEDLIIDPYFHRITTMMRN 398 (490)
Q Consensus 325 s~~vsL~CPls~~ri~~P~R~~~C~HlQCFDl-~~fL~~~~~~~~W~CPiC~k~~~-~~~L~ID~y~~~il~~l~~ 398 (490)
.+.-.+.||+-...+..|+....|.|.-|.+- ..|+. .....||+|.+.+. ...|..|..+.+++..+..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALR----SGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH----TTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH----hCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 34456789999999999998889999866542 33443 23578999999884 5789999999999887743
No 59
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=94.56 E-value=0.019 Score=45.27 Aligned_cols=47 Identities=23% Similarity=0.612 Sum_probs=35.9
Q ss_pred cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceec
Q 011246 86 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (490)
Q Consensus 86 iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~ 138 (490)
+|+.+...+.|+.|+. |..+.|..|++.+... +|. -..++|+.|+..
T Consensus 23 ~C~~~~~~~~ll~CD~--C~~~yH~~Cl~Ppl~~---~P~-g~~W~C~~C~~~ 69 (70)
T 3asl_A 23 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPPLSS---VPS-EDEWYCPECRND 69 (70)
T ss_dssp TTCCCSCGGGEEECTT--TCCEEEGGGSSSCCSS---CCS-SSCCCCTTTSCC
T ss_pred CCCCcCCCCCEEEcCC--CCCceecccCCCCcCC---CCC-CCCcCCcCccCc
Confidence 5787777789999999 9999999999965332 232 127999999753
No 60
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.49 E-value=0.027 Score=48.03 Aligned_cols=62 Identities=21% Similarity=0.416 Sum_probs=50.0
Q ss_pred eecCCCCccccccccCCCCcCcccccCH-HHHHHHHcCCCeeecCCCCCCCCCCCeeecHHHHHHHHHHh
Q 011246 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMMR 397 (490)
Q Consensus 329 sL~CPls~~ri~~P~R~~~C~HlQCFDl-~~fL~~~~~~~~W~CPiC~k~~~~~~L~ID~y~~~il~~l~ 397 (490)
.|.|||-...+..|+....|.|.-|..- ..|+. ..||+|.+.+...+|..+..+..+++.++
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-------~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~ 84 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-------TGCPVCYTPAWIQDLKINRQLDSMIQLCS 84 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-------TBCSSSCCBCSCSSCCCCHHHHHHHHHHH
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-------CCCcCCCCcCccccccccHHHHHHHHHHH
Confidence 4679999999999998889999876543 22222 57999999999999999999988877554
No 61
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.47 E-value=0.026 Score=42.38 Aligned_cols=45 Identities=29% Similarity=0.694 Sum_probs=34.1
Q ss_pred ceec-cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccce
Q 011246 82 KIFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 136 (490)
Q Consensus 82 ~~rC-iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Cr 136 (490)
...| +|+.. +.||.|+. |..+.|..|+..+... +|. ..++|+.|+
T Consensus 9 ~~~C~vC~~~---g~ll~Cd~--C~~~~H~~Cl~ppl~~---~p~--g~W~C~~C~ 54 (56)
T 2yql_A 9 EDFCSVCRKS---GQLLMCDT--CSRVYHLDCLDPPLKT---IPK--GMWICPRCQ 54 (56)
T ss_dssp CCSCSSSCCS---SCCEECSS--SSCEECSSSSSSCCCS---CCC--SSCCCHHHH
T ss_pred CCCCccCCCC---CeEEEcCC--CCcceECccCCCCcCC---CCC--CceEChhhh
Confidence 3456 58863 68999999 9999999999965432 232 589999985
No 62
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.31 E-value=0.035 Score=44.67 Aligned_cols=46 Identities=24% Similarity=0.641 Sum_probs=35.3
Q ss_pred cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceeccccee
Q 011246 86 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 137 (490)
Q Consensus 86 iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl 137 (490)
+|+.+...+.|+.|+. |..+.|..|+..+... +|.. ..++|+.|+.
T Consensus 31 vC~~~~~~~~ll~CD~--C~~~yH~~Cl~Ppl~~---~P~g-~~W~C~~C~~ 76 (77)
T 2e6s_A 31 VCGGKHEPNMQLLCDE--CNVAYHIYCLNPPLDK---VPEE-EYWYCPSCKT 76 (77)
T ss_dssp SSCCCCCSTTEEECSS--SCCEEETTSSSSCCSS---CCCS-SCCCCTTTCC
T ss_pred CcCCcCCCCCEEEcCC--CCccccccccCCCccC---CCCC-CCcCCcCccC
Confidence 5888777889999999 9999999999965432 2211 1689999964
No 63
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=94.13 E-value=0.041 Score=47.26 Aligned_cols=65 Identities=12% Similarity=0.291 Sum_probs=51.1
Q ss_pred EEeecCCCCccccccccCCCCcCcccccCH-HHHHHHHcCCCeeecCCCCCCCCC-CCeeecHHHHHHHHHH
Q 011246 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYSL-EDLIIDPYFHRITTMM 396 (490)
Q Consensus 327 ~vsL~CPls~~ri~~P~R~~~C~HlQCFDl-~~fL~~~~~~~~W~CPiC~k~~~~-~~L~ID~y~~~il~~l 396 (490)
.-.+.|||-...+..|+.. .|.|.=|.+- ..|+. .....||+|.+.+.. .+|..+..+..+++.+
T Consensus 50 ~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~ 116 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFR----AQVFSCPACRYDLGRSYAMQVNQPLQTVLNQL 116 (124)
T ss_dssp HHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHH----TTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHH
T ss_pred ccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHh----HCcCCCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 3357899999999999886 8999866643 34443 345699999999987 8899999999987654
No 64
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=94.13 E-value=0.029 Score=52.04 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=35.8
Q ss_pred CCceeccCCCCCC-CCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceec
Q 011246 80 GGKIFCPCGTSLP-SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (490)
Q Consensus 80 ~~~~rCiCg~s~~-~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~ 138 (490)
+...+|.||+.-. ...|+||.. |..|.|..|+.....++.++ ..--.|.|..|...
T Consensus 3 ~~~~yCYCG~~~~~~~~mLqC~~--C~qWFH~~Cl~~~~~~~lp~-~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 3 TQAGSVDEENGRQLGEVELQCGI--CTKWFTADTFGIDTSSCLPF-MTNYSFHCNVCHHS 59 (177)
T ss_dssp --------CTTCCTTSCEEECTT--TCCEEEGGGGTCCCTTCCTT-CCSEEEECTTTSTT
T ss_pred CeeeEEEcCCCCCCCceeEeecc--ccceecHHHhcccccCcccc-ceeEEEEccccCCC
Confidence 4567899999543 567999999 99999999999766543221 23467789999764
No 65
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.12 E-value=0.031 Score=46.75 Aligned_cols=57 Identities=23% Similarity=0.393 Sum_probs=41.3
Q ss_pred eecCCCCccccccccCCCCcCcccccCH-HHHHHHHcCCCeeecCCCCCCCCCCCeeecHH
Q 011246 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYSLEDLIIDPY 388 (490)
Q Consensus 329 sL~CPls~~ri~~P~R~~~C~HlQCFDl-~~fL~~~~~~~~W~CPiC~k~~~~~~L~ID~y 388 (490)
.+.||+-+..+..|+. ..|.|.-|.+- ..|+. .......||+|.+.+...+|..+..
T Consensus 21 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~--~~~~~~~CP~Cr~~~~~~~~~~~~~ 78 (112)
T 1jm7_A 21 ILECPICLELIKEPVS-TKCDHIFCKFCMLKLLN--QKKGPSQCPLCKNDITKRSLQESTR 78 (112)
T ss_dssp HTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHH--SSSSSCCCTTTSCCCCTTTCBCCCS
T ss_pred CCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHH--hCCCCCCCcCCCCcCCHhhcCccHH
Confidence 3579999999999988 48999866543 33333 2234579999999999887765533
No 66
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=94.12 E-value=0.03 Score=43.21 Aligned_cols=51 Identities=18% Similarity=0.378 Sum_probs=37.0
Q ss_pred eec-cCCCC--CCCCCeeeeeCCCcCccccccccccCCCCCccc-cCCCCceecccceec
Q 011246 83 IFC-PCGTS--LPSESKIQCVDPRCLVQQHISCVIIPEKPMEEI-RLLPPLFFCETCRIK 138 (490)
Q Consensus 83 ~rC-iCg~s--~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~-p~~p~~f~C~~Crl~ 138 (490)
..| +|+.. ...+.|+.|+. |..++|..|++++... +.+ | ...++|+.|+..
T Consensus 7 ~~C~vC~~~~~~~~~~ll~Cd~--C~~~~H~~C~~p~l~~-~~~~p--~~~W~C~~C~~~ 61 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMVICDK--CGQGYHQLCHTPHIDS-SVIDS--DEKWLCRQCVFA 61 (66)
T ss_dssp CCBSSSCCCCCBTTBCEEECSS--SCCEEETTTSSSCCCH-HHHHS--SCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCEEECCC--CChHHHhhhCCCcccc-cccCC--CCCEECCCCcCc
Confidence 345 68865 34589999999 9999999999986431 001 2 257999999764
No 67
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=94.06 E-value=0.023 Score=48.58 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=51.4
Q ss_pred ceEEeecCCCCccccccccCCCCcCcccccCH-HHHHHHHcCCCeeecCCCCCCCCCCCeeecHHHHHHHHHH
Q 011246 325 SIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMM 396 (490)
Q Consensus 325 s~~vsL~CPls~~ri~~P~R~~~C~HlQCFDl-~~fL~~~~~~~~W~CPiC~k~~~~~~L~ID~y~~~il~~l 396 (490)
.+.-.+.|||-...+..|+.. .|.|.=|.+- ..|+.... ..||+|.+.+...++..+.++.+++..+
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAG----HKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHC----SBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhCC----CCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 344467899999999999885 7999866543 33443322 3899999999999999999998886544
No 68
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.87 E-value=0.0099 Score=47.01 Aligned_cols=62 Identities=21% Similarity=0.380 Sum_probs=44.7
Q ss_pred EeecCCCCccccccccCCCCcCcccccCH-HHHHHHHc-CCCeeecCCCCCCCCCCCeeecHHHH
Q 011246 328 VNLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQ-RTRKWQCPICMKNYSLEDLIIDPYFH 390 (490)
Q Consensus 328 vsL~CPls~~ri~~P~R~~~C~HlQCFDl-~~fL~~~~-~~~~W~CPiC~k~~~~~~L~ID~y~~ 390 (490)
-.+.||+-+..+..|+. ..|.|.-|.+- ..|+.... ......||+|.+.+..++|..+..+.
T Consensus 18 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVA 81 (85)
T ss_dssp TTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCC
T ss_pred cCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHH
Confidence 35689999999999986 46999865543 23333221 23478999999999999888876543
No 69
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=93.67 E-value=0.06 Score=48.29 Aligned_cols=65 Identities=15% Similarity=0.388 Sum_probs=51.4
Q ss_pred EeecCCCCccccccccCCCCcCcccccC-HHHHHHHHcCCCeeecCCCCCCCCCC-CeeecHHHHHHHHHHh
Q 011246 328 VNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLE-DLIIDPYFHRITTMMR 397 (490)
Q Consensus 328 vsL~CPls~~ri~~P~R~~~C~HlQCFD-l~~fL~~~~~~~~W~CPiC~k~~~~~-~L~ID~y~~~il~~l~ 397 (490)
-.+.|||-...+..|+. ..|.|.-|.+ +..|+. .....||+|...+... .|..+..+.++++.+.
T Consensus 77 ~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFK----AQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHH----TTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred cCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHH----hCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 35789999999999998 5999986653 333443 2456899999999988 8999999999987653
No 70
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.62 E-value=0.092 Score=39.81 Aligned_cols=53 Identities=13% Similarity=0.277 Sum_probs=39.2
Q ss_pred EEeecCCCCccccccccCCCCcCcccccCHHHHHHHHcCCCeeecCCCCCCCCCCCe
Q 011246 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDL 383 (490)
Q Consensus 327 ~vsL~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~~~L 383 (490)
.-.+.||+-...++.|+. ..|.|.-|.+ -+..... .....||+|.+.+..++|
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~--Ci~~~~~-~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ-TECGHRFCES--CMAALLS-SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCC-CSSSCCCCHH--HHHHHHT-TSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeE-CCCCCHHHHH--HHHHHHH-hCcCCCCCCCcCCChhhc
Confidence 335789999999999998 6999985543 3333322 345689999999988765
No 71
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=93.52 E-value=0.035 Score=42.19 Aligned_cols=45 Identities=29% Similarity=0.696 Sum_probs=34.2
Q ss_pred ec-cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceec
Q 011246 84 FC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (490)
Q Consensus 84 rC-iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~ 138 (490)
.| +|+. .+.||.|+. |..+.|..|++.+... +|. ..++|+.|+..
T Consensus 7 ~C~vC~~---~g~ll~Cd~--C~~~fH~~Cl~ppl~~---~p~--g~W~C~~C~~~ 52 (60)
T 2puy_A 7 FCSVCRK---SGQLLMCDT--CSRVYHLDCLDPPLKT---IPK--GMWICPRCQDQ 52 (60)
T ss_dssp SCTTTCC---CSSCEECSS--SSCEECGGGSSSCCSS---CCC--SCCCCHHHHHH
T ss_pred CCcCCCC---CCcEEEcCC--CCcCEECCcCCCCcCC---CCC--CceEChhccCh
Confidence 45 5876 368999999 9999999999965432 232 58999999653
No 72
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.83 E-value=0.016 Score=45.81 Aligned_cols=62 Identities=16% Similarity=0.307 Sum_probs=45.1
Q ss_pred EEeecCCCCccccccccCCCCcCcccccCHH-HHHHHH-cCCCeeecCCCCCCCCCCCeeecHHH
Q 011246 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFDLE-TFVELN-QRTRKWQCPICMKNYSLEDLIIDPYF 389 (490)
Q Consensus 327 ~vsL~CPls~~ri~~P~R~~~C~HlQCFDl~-~fL~~~-~~~~~W~CPiC~k~~~~~~L~ID~y~ 389 (490)
.-.+.||+-+..+..|+.. .|.|.-|.+-- .|+... .......||+|.+.+...+|..+..+
T Consensus 17 ~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l 80 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHV 80 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCC
T ss_pred cCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHH
Confidence 3457899999999999875 79998766533 344331 13447899999999998888766544
No 73
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.52 E-value=0.094 Score=40.32 Aligned_cols=55 Identities=15% Similarity=0.447 Sum_probs=40.9
Q ss_pred EEeecCCCCccccccccCCCCcCcccccCHHHHHHHHc-CCCeeecCCCCCCCCCCCee
Q 011246 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQ-RTRKWQCPICMKNYSLEDLI 384 (490)
Q Consensus 327 ~vsL~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~-~~~~W~CPiC~k~~~~~~L~ 384 (490)
.-.+.|||-+..+..|+.. .|.|.-|. .-+....+ ......||+|.+.+..++++
T Consensus 18 ~~~~~C~IC~~~~~~~~~~-~CgH~fC~--~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~r 73 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTI-DCGHNFCL--KCITQIGETSCGFFKCPLCKTSVRKNAIR 73 (73)
T ss_dssp CCCCBCTTTCSBCSSEEEC-TTCCEEEH--HHHHHHCSSSCSCCCCSSSCCCCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEc-CCCChhhH--HHHHHHHHcCCCCCCCCCCCCcCCcccCC
Confidence 4467899999999999887 89999554 44444333 24567999999999887763
No 74
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=92.33 E-value=0.098 Score=44.69 Aligned_cols=46 Identities=20% Similarity=0.507 Sum_probs=34.0
Q ss_pred Cceecc-CCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccce
Q 011246 81 GKIFCP-CGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 136 (490)
Q Consensus 81 ~~~rCi-Cg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Cr 136 (490)
....|. |+. .|.||.|+++.|..|.|..|+++...| ...+||+.|+
T Consensus 14 ~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~L~~~P-------~g~W~Cp~c~ 60 (107)
T 4gne_A 14 HEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLNLTQPP-------YGKWECPWHQ 60 (107)
T ss_dssp SCSSCTTTCC---CSEEEECCSTTCCCEECTGGGTCSSCC-------SSCCCCGGGB
T ss_pred CCCCCCcCCC---CCcEeEECCCCCCcccccccCcCCcCC-------CCCEECCCCC
Confidence 344575 663 578999995559999999999965433 2578999774
No 75
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=92.23 E-value=0.19 Score=41.47 Aligned_cols=49 Identities=16% Similarity=0.507 Sum_probs=36.1
Q ss_pred CCceec-cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceec
Q 011246 80 GGKIFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (490)
Q Consensus 80 ~~~~rC-iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~ 138 (490)
+....| +|+.. +.++.|+. |...+|..|+..+.. .+|. ..++|+.|+..
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~--C~~~fH~~Cl~PpL~---~~P~--g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQ--CEFCFHLDCHLPALQ---DVPG--EEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTT--SSCEECTTSSSTTCC---CCCS--SSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CCEEECCC--CCCceecccCCCCCC---CCcC--CCcCCccccCC
Confidence 344456 58763 57999999 999999999976533 2333 58999999865
No 76
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=92.18 E-value=0.079 Score=42.58 Aligned_cols=46 Identities=24% Similarity=0.603 Sum_probs=34.5
Q ss_pred cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceeccccee
Q 011246 86 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 137 (490)
Q Consensus 86 iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl 137 (490)
+|+.....+.|+.|+. |..+.|..|+..+.. .+|.. +.++|+.|+-
T Consensus 31 vC~~~~d~~~ll~CD~--C~~~yH~~Cl~PpL~---~~P~g-~~W~C~~C~~ 76 (77)
T 3shb_A 31 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPPLS---SVPSE-DEWYCPECRN 76 (77)
T ss_dssp TTCCCSCGGGEEECTT--TCCEEETTTSSSCCS---SCCSS-SCCCCTTTC-
T ss_pred ccCCCCCCcceeEeCC--CCCccCcccCCCccc---CCCCC-CceECcCccc
Confidence 4777766788999999 999999999996543 23331 2389999974
No 77
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=91.73 E-value=0.079 Score=41.34 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=37.2
Q ss_pred EeecCCCCccccccccCCCCcCcccccC-HHHHHHHHcCCCeeecCCCCCCCCC
Q 011246 328 VNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSL 380 (490)
Q Consensus 328 vsL~CPls~~ri~~P~R~~~C~HlQCFD-l~~fL~~~~~~~~W~CPiC~k~~~~ 380 (490)
-.+.|||-...+..|+....|.|.-|.+ +..|+.. .....||+|.+.+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE---SDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHH---SSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHh---cCCCcCCCCCCcCCC
Confidence 3578999999999999966699997765 3444442 235689999987543
No 78
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=91.73 E-value=0.076 Score=48.07 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=51.6
Q ss_pred eceEEeecCCCCccccccccCCCCcCcccccCH-HHHHHHHcCCCeeecCCCCCCCCCCCeeecHHHHHHHHHH
Q 011246 324 DSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFHRITTMM 396 (490)
Q Consensus 324 ~s~~vsL~CPls~~ri~~P~R~~~C~HlQCFDl-~~fL~~~~~~~~W~CPiC~k~~~~~~L~ID~y~~~il~~l 396 (490)
+.+.-.|.|||-...+..|+. ..|.|.=|.+- ..|+.... ..||+|.+.+...++..|.++.+++..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAG----HKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHC----SBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCC----CCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 344556899999999999988 48999866542 33443221 2999999999999999999998876543
No 79
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.51 E-value=0.11 Score=40.10 Aligned_cols=51 Identities=18% Similarity=0.342 Sum_probs=40.3
Q ss_pred eecCCCCccccccccCCCCcCcccccC-HHHHHHHHcCCCeeecCCCCCCCCCCCee
Q 011246 329 NLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI 384 (490)
Q Consensus 329 sL~CPls~~ri~~P~R~~~C~HlQCFD-l~~fL~~~~~~~~W~CPiC~k~~~~~~L~ 384 (490)
.+.|||-+..+..|+.-..|.|.-|.+ +..|+.. .-.||+|.+.+...++.
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-----SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-----CSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-----CCcCCCcCcccCccccc
Confidence 568999999999999888999986664 3455543 36899999998877653
No 80
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=91.34 E-value=0.12 Score=43.82 Aligned_cols=48 Identities=23% Similarity=0.386 Sum_probs=37.3
Q ss_pred cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceeccC
Q 011246 86 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRA 140 (490)
Q Consensus 86 iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~~ 140 (490)
+|+.......|+.|+. |..++|..|+..+.+ .+|. ..++|+.|+....
T Consensus 59 ~C~~~~~~~~ll~Cd~--C~~~yH~~Cl~ppl~---~~P~--g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 59 NCKQSGEDSKMLVCDT--CDKGYHTFCLQPVMK---SVPT--NGWKCKNCRICIS 106 (111)
T ss_dssp TTCCCSCCTTEEECSS--SCCEEEGGGSSSCCS---SCCS--SCCCCHHHHCCSC
T ss_pred ccCccCCCCCeeECCC--CCcHHhHHhcCCccc---cCCC--CCcCCcCCcCcCC
Confidence 4777766678999999 999999999996543 2333 5899999977643
No 81
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=91.26 E-value=0.12 Score=49.69 Aligned_cols=45 Identities=24% Similarity=0.640 Sum_probs=31.4
Q ss_pred cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCC-ceeccccee
Q 011246 86 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPP-LFFCETCRI 137 (490)
Q Consensus 86 iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~-~f~C~~Crl 137 (490)
+|+.+...+.|+.|+. |..+.|..|+..+... +|. . .++|+.|+.
T Consensus 179 vC~~~~~~~~lL~CD~--C~~~yH~~CL~PPL~~---vP~--G~~W~Cp~C~~ 224 (226)
T 3ask_A 179 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPPLSS---VPS--EDEWYCPECRN 224 (226)
T ss_dssp SSCCCCC--CCEECSS--SCCEECSCC--CCCCS---CCS--SSCCCCGGGC-
T ss_pred CCCCCCCCCCeEEcCC--CCcceeCccCCCCccc---CCC--CCCCCCcCCcC
Confidence 5787766789999999 9999999999965432 221 3 689999975
No 82
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=91.15 E-value=0.11 Score=44.63 Aligned_cols=46 Identities=28% Similarity=0.467 Sum_probs=36.4
Q ss_pred cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceec
Q 011246 86 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (490)
Q Consensus 86 iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~ 138 (490)
+|+.....+.|+.|+. |..++|..|+..+.. .+|. ..++|+.|+..
T Consensus 63 ~C~~~~~~~~ll~Cd~--C~~~yH~~Cl~ppl~---~~P~--g~W~C~~C~~~ 108 (114)
T 2kwj_A 63 LCGTSENDDQLLFCDD--CDRGYHMYCLNPPVA---EPPE--GSWSCHLCWEL 108 (114)
T ss_dssp TTTCCTTTTTEEECSS--SCCEEETTTSSSCCS---SCCS--SCCCCHHHHHH
T ss_pred cccccCCCCceEEcCC--CCccccccccCCCcc---CCCC--CCeECccccch
Confidence 5788777789999999 999999999996533 2333 57999999754
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=90.96 E-value=0.15 Score=47.11 Aligned_cols=44 Identities=20% Similarity=0.437 Sum_probs=34.0
Q ss_pred cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceecc
Q 011246 86 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (490)
Q Consensus 86 iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~ 139 (490)
+|+. .|.++.|+. |..+.|..|+..+.. .+|. +.++|+.|+...
T Consensus 9 ~C~~---~g~ll~Cd~--C~~~~H~~C~~p~l~---~~p~--~~W~C~~C~~~~ 52 (184)
T 3o36_A 9 VCQN---GGELLCCEK--CPKVFHLSCHVPTLT---NFPS--GEWICTFCRDLS 52 (184)
T ss_dssp TTCC---CSSCEECSS--SSCEECTTTSSSCCS---SCCS--SCCCCTTTSCSS
T ss_pred cCCC---CCeeeecCC--CCcccCccccCCCCC---CCCC--CCEECccccCcc
Confidence 5875 467999999 999999999986543 2232 579999999764
No 84
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=90.87 E-value=0.016 Score=45.41 Aligned_cols=58 Identities=24% Similarity=0.478 Sum_probs=40.7
Q ss_pred eecCCCCccccccccCCCCcCcccccCHHHHHHHHcC-----CCeeecCCCCCCCCCCCeeecHHH
Q 011246 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQR-----TRKWQCPICMKNYSLEDLIIDPYF 389 (490)
Q Consensus 329 sL~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~~-----~~~W~CPiC~k~~~~~~L~ID~y~ 389 (490)
.+.||+-+..+..|+.. .|.|.-|.+ =+...... .....||+|.+.+...+|..+..+
T Consensus 12 ~~~C~IC~~~~~~p~~l-~CgH~fC~~--Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l 74 (79)
T 2egp_A 12 EVTCPICLELLTEPLSL-DCGHSLCRA--CITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHL 74 (79)
T ss_dssp CCEETTTTEECSSCCCC-SSSCCCCHH--HHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSS
T ss_pred CCCCcCCCcccCCeeEC-CCCCHHHHH--HHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHH
Confidence 46799999999999874 799985533 33222222 236899999999988777655443
No 85
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=90.38 E-value=0.15 Score=43.57 Aligned_cols=42 Identities=19% Similarity=0.429 Sum_probs=31.8
Q ss_pred CCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceec
Q 011246 94 ESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (490)
Q Consensus 94 ~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~ 138 (490)
..|++|.. |..|.|.+|++++...+ -..+.|+.|.|+.|+..
T Consensus 73 ~~m~~C~~--C~~~~H~~C~~~~~~~~-~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 73 KKLMECCI--CNEIVHPGCLQMDGEGL-LNEELPNCWECPKCYQE 114 (117)
T ss_dssp GSCEEETT--TCCEECGGGCCSCCCCE-ECSSSSSEEECTTTC--
T ss_pred cceEEeee--cCCeEECCCCCCCcccc-ccccCCCCeECCCCcCC
Confidence 45999999 99999999999865431 11357788999999875
No 86
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.28 E-value=0.28 Score=38.61 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=40.1
Q ss_pred eecCCCCccccccccCCCCcCcccccCH-HHHHHHHcCCCeeecCCCCCCCCCCCeeecHHHH
Q 011246 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYSLEDLIIDPYFH 390 (490)
Q Consensus 329 sL~CPls~~ri~~P~R~~~C~HlQCFDl-~~fL~~~~~~~~W~CPiC~k~~~~~~L~ID~y~~ 390 (490)
.+.|||-+..+..|+. ..|.|.-|.+- ..|+. . ...||+|.+.+. ..+.....+.
T Consensus 15 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~---~--~~~CP~Cr~~~~-~~~~~~~~l~ 70 (81)
T 2csy_A 15 PFRCFICRQAFQNPVV-TKCRHYFCESCALEHFR---A--TPRCYICDQPTG-GIFNPAKELM 70 (81)
T ss_dssp CSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHH---H--CSBCSSSCCBCC-SCCEECHHHH
T ss_pred CCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHH---C--CCcCCCcCcccc-ccCCcHHHHH
Confidence 5689999999999986 68999866542 23332 2 458999999986 6677665443
No 87
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=90.05 E-value=0.27 Score=37.44 Aligned_cols=46 Identities=26% Similarity=0.587 Sum_probs=34.8
Q ss_pred eec-cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceec
Q 011246 83 IFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (490)
Q Consensus 83 ~rC-iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~ 138 (490)
..| +|+. .+.|+.|+. |..++|..|+..+... +|. ..++|+.|+..
T Consensus 10 ~~C~vC~~---~g~ll~Cd~--C~~~fH~~Cl~ppl~~---~p~--g~W~C~~C~~~ 56 (61)
T 1mm2_A 10 EFCRVCKD---GGELLCCDT--CPSSYHIHCLNPPLPE---IPN--GEWLCPRCTCP 56 (61)
T ss_dssp SSCTTTCC---CSSCBCCSS--SCCCBCSSSSSSCCSS---CCS--SCCCCTTTTTT
T ss_pred CcCCCCCC---CCCEEEcCC--CCHHHcccccCCCcCc---CCC--CccCChhhcCc
Confidence 345 5875 467999999 9999999999965432 232 58999999754
No 88
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=89.88 E-value=0.12 Score=43.63 Aligned_cols=64 Identities=19% Similarity=0.362 Sum_probs=47.0
Q ss_pred eecCCCCccccccccCCCCcCcccccCHHHHHHHHcCCCeeecCCCCCCCCC-------CCeeecHHHHHHHHHH
Q 011246 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSL-------EDLIIDPYFHRITTMM 396 (490)
Q Consensus 329 sL~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~-------~~L~ID~y~~~il~~l 396 (490)
.+.||+-+..+..|+.- .|.|.-|.+- +.... ......||+|.+.+.. .++.+|..+.++++..
T Consensus 15 ~~~C~iC~~~~~~p~~~-~CgH~fC~~C--i~~~~-~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~ 85 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL-PCNHTLCKPC--FQSTV-EKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKH 85 (115)
T ss_dssp HHBCTTTCSBCSSCEEC-TTSCEECHHH--HCCCC-CTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred CCCCccCCcccCceeEc-CCCCHHhHHH--HHHHH-hHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHH
Confidence 46899999999999987 7999855432 22211 2235789999998864 7888988888887543
No 89
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=88.69 E-value=0.25 Score=41.66 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=46.9
Q ss_pred EEeecCCCCccccccccCCCCcCcccccCH-HHHHHHHcCCCeeecCCCCCCCCCCCee-ecHHHHHHHHHH
Q 011246 327 IVNLRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYSLEDLI-IDPYFHRITTMM 396 (490)
Q Consensus 327 ~vsL~CPls~~ri~~P~R~~~C~HlQCFDl-~~fL~~~~~~~~W~CPiC~k~~~~~~L~-ID~y~~~il~~l 396 (490)
.-.+.|||-...+..|+. ..|.|.-|.+- ..|+... .-.||+|.+.+...+|. .+..+.++++.+
T Consensus 21 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 21 VKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVM----GSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHT----CSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred cCCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHC----cCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 336789999999999998 58999866542 3344321 34799999999988875 566666665544
No 90
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=87.49 E-value=0.21 Score=43.77 Aligned_cols=59 Identities=27% Similarity=0.528 Sum_probs=40.0
Q ss_pred ecCCCCccccccccCCCCcCcccccCHHHHHHHHcCCCeeecCCCCCCCCCC--CeeecHHHHHHH
Q 011246 330 LRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLE--DLIIDPYFHRIT 393 (490)
Q Consensus 330 L~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~~--~L~ID~y~~~il 393 (490)
|.|||-...+..|+- ..|.|.=|.+- +..... ..-.||+|.+.+... ++.+|..+..++
T Consensus 54 ~~C~iC~~~~~~~~~-~~CgH~fc~~C--i~~~~~--~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 54 LQCIICSEYFIEAVT-LNCAHSFCSYC--INEWMK--RKIECPICRKDIKSKTYSLVLDNCINKMV 114 (138)
T ss_dssp SBCTTTCSBCSSEEE-ETTSCEEEHHH--HHHHTT--TCSBCTTTCCBCCCEEECHHHHHHHHHHH
T ss_pred CCCcccCcccCCceE-CCCCCCccHHH--HHHHHH--cCCcCCCCCCcCCCCCCccchhHHHHHHH
Confidence 579999999999985 47999866554 222222 235799999887533 455666665553
No 91
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=87.14 E-value=0.49 Score=35.55 Aligned_cols=52 Identities=19% Similarity=0.382 Sum_probs=37.0
Q ss_pred ecCCCCcc-ccccccC---CCCcCcccccCH-HHHHHHHcCCCeeecCCCCCCCCCCCeee
Q 011246 330 LRCPMSGS-RIRVAGR---FKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYSLEDLII 385 (490)
Q Consensus 330 L~CPls~~-ri~~P~R---~~~C~HlQCFDl-~~fL~~~~~~~~W~CPiC~k~~~~~~L~I 385 (490)
+.||+-+. .+.-|.+ ...|.|.-|.+- ..++. ....+||+|++.+...+++-
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----RGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH----TTSSSCTTTCCCCSSCCCEE
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH----cCCCcCCCCCCcccccccee
Confidence 46999999 8888874 468999865432 22322 23568999999998887754
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=86.62 E-value=0.48 Score=40.33 Aligned_cols=45 Identities=20% Similarity=0.543 Sum_probs=33.7
Q ss_pred cCCCC-CCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceeccccee
Q 011246 86 PCGTS-LPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRI 137 (490)
Q Consensus 86 iCg~s-~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl 137 (490)
+|+.. ...+.|+.|+. |..+.|..|+..+.. .+|+ ..++|+.|+.
T Consensus 66 vC~~~~~~~~~ll~Cd~--C~~~yH~~Cl~p~l~---~~P~--~~W~C~~C~~ 111 (112)
T 3v43_A 66 SCRDQGKNADNMLFCDS--CDRGFHMECCDPPLT---RMPK--GMWICQICRP 111 (112)
T ss_dssp TTCCCCCTTCCCEECTT--TCCEECGGGCSSCCS---SCCS--SCCCCTTTSC
T ss_pred cccCcCCCccceEEcCC--CCCeeecccCCCCCC---CCCC--CCeECCCCCC
Confidence 46653 34568999999 999999999986533 2333 4799999985
No 93
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=85.88 E-value=0.29 Score=36.22 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=35.4
Q ss_pred ecCCCCcccccccc------CCCCcCcccccC-HHHHHHHHcCCCeeecCCCCCCCCCCCee
Q 011246 330 LRCPMSGSRIRVAG------RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI 384 (490)
Q Consensus 330 L~CPls~~ri~~P~------R~~~C~HlQCFD-l~~fL~~~~~~~~W~CPiC~k~~~~~~L~ 384 (490)
+.||+-+..+..|. ....|.|.-|.+ +..|+.. ...||+|.+.+...++.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-----CSBCTTTCCBCTTTCEE
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-----CCCCCCCCccCCcccee
Confidence 46999999888874 456899985544 2344432 35899999998877664
No 94
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=84.48 E-value=0.39 Score=36.43 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=35.7
Q ss_pred ecCCCCcccccccc------CCCCcCcccccC-HHHHHHHHcCCCeeecCCCCCCCCCCCee
Q 011246 330 LRCPMSGSRIRVAG------RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI 384 (490)
Q Consensus 330 L~CPls~~ri~~P~------R~~~C~HlQCFD-l~~fL~~~~~~~~W~CPiC~k~~~~~~L~ 384 (490)
+.||+-+..+..|. ....|.|.=|.+ +..|+... -.||+|.+.+...++.
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----NTCPTCRKKINHKRYH 67 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-----SBCTTTCCBCCCCSCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-----CCCCCCCCccChhhee
Confidence 36999999998884 556899985554 23444321 3899999998876653
No 95
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=83.39 E-value=0.7 Score=34.79 Aligned_cols=44 Identities=23% Similarity=0.554 Sum_probs=33.2
Q ss_pred cCCCCccccccccCCCCcCcccccCH-HHHHHHHcCCCeeecCCCCCCCC
Q 011246 331 RCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYS 379 (490)
Q Consensus 331 ~CPls~~ri~~P~R~~~C~HlQCFDl-~~fL~~~~~~~~W~CPiC~k~~~ 379 (490)
.||+-...+..|+....|.|.-|++- ..|+.. ...||+|.+.+.
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~ 51 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-----NPTCPLCKVPVE 51 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-----SCSTTTTCCCCC
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-----cCcCcCCChhhH
Confidence 59999999988878888999866653 345532 258999998874
No 96
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.14 E-value=0.74 Score=36.32 Aligned_cols=51 Identities=24% Similarity=0.468 Sum_probs=36.0
Q ss_pred eecCCCCcccccc----ccCCCCcCcccccCH-HHHHHHHcCCCeeecCCCCCCCCCCC
Q 011246 329 NLRCPMSGSRIRV----AGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYSLED 382 (490)
Q Consensus 329 sL~CPls~~ri~~----P~R~~~C~HlQCFDl-~~fL~~~~~~~~W~CPiC~k~~~~~~ 382 (490)
.+.||+-+..+.. |+.. .|.|.-|.+- ..|+.. ......||+|.+.+...+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~--~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLAS--SINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHH--CSSCBCCTTTCCCBCCSS
T ss_pred CCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHc--CCCCcCCCCCCCcccchh
Confidence 4679999999887 6654 7999866542 334432 234689999999887654
No 97
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=83.06 E-value=0.18 Score=44.76 Aligned_cols=72 Identities=14% Similarity=0.264 Sum_probs=50.4
Q ss_pred eeeeeceEEeecCCCCccccccccCCCCcCcccccC-HHHHHHHHcCCCeeecCCCCCCCCC---------CCeeecHHH
Q 011246 320 EIIADSIIVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSL---------EDLIIDPYF 389 (490)
Q Consensus 320 eIv~~s~~vsL~CPls~~ri~~P~R~~~C~HlQCFD-l~~fL~~~~~~~~W~CPiC~k~~~~---------~~L~ID~y~ 389 (490)
+++.+.+.-.|.||+-...+.-|+. ..|.|.=|.. +..|+ +.....||+|.+.+.+ .++..|.++
T Consensus 22 ~~~~~~l~~~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~----~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~ 96 (141)
T 3knv_A 22 TLLGTKLEAKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASIL----SSGPQNCAACVHEGIYEEGISILESSSAFPDNAA 96 (141)
T ss_dssp GGTGGGCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHG----GGSCEECHHHHHTTCCCTTTTEECGGGCEECHHH
T ss_pred hhhhccCCcCcCCCCCChhhcCcEE-CCCCCccCHHHHHHHH----hcCCCCCCCCCCcccccccccccchhhhcccHHH
Confidence 3444555667899999999999988 4899986654 22233 2334689999987543 356688888
Q ss_pred HHHHHHH
Q 011246 390 HRITTMM 396 (490)
Q Consensus 390 ~~il~~l 396 (490)
.+.+..|
T Consensus 97 ~~~i~~L 103 (141)
T 3knv_A 97 RREVESL 103 (141)
T ss_dssp HHHHHTS
T ss_pred HHHHccc
Confidence 8776544
No 98
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=82.99 E-value=0.71 Score=35.80 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=35.4
Q ss_pred eecCCCCccccccccC--CCCcCcccccC-HHHHHHHHcCCCeeecCCCCCCCCCCCee
Q 011246 329 NLRCPMSGSRIRVAGR--FKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI 384 (490)
Q Consensus 329 sL~CPls~~ri~~P~R--~~~C~HlQCFD-l~~fL~~~~~~~~W~CPiC~k~~~~~~L~ 384 (490)
.+.|||-+..+..|.. ...|.|.-|++ +..|+. + ...||+|.+.+...++.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~---~--~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE---Q--HDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT---T--TCSCTTTCCCCCCSCSC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH---c--CCcCcCcCCccCCcccC
Confidence 4569999888876543 35799986665 344553 2 25899999998776654
No 99
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=82.01 E-value=0.7 Score=43.40 Aligned_cols=46 Identities=20% Similarity=0.489 Sum_probs=35.0
Q ss_pred ec-cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceecc
Q 011246 84 FC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKR 139 (490)
Q Consensus 84 rC-iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~ 139 (490)
.| +|+. .|.++-|+. |..+.|..|+..+.. .+|. +.++|+.|+...
T Consensus 9 ~C~~C~~---~g~ll~Cd~--C~~~~H~~Cl~p~l~---~~p~--~~W~C~~C~~~~ 55 (207)
T 3u5n_A 9 WCAVCQN---GGDLLCCEK--CPKVFHLTCHVPTLL---SFPS--GDWICTFCRDIG 55 (207)
T ss_dssp SBTTTCC---CEEEEECSS--SSCEECTTTSSSCCS---SCCS--SCCCCTTTSCSS
T ss_pred CCCCCCC---CCceEEcCC--CCCccCCccCCCCCC---CCCC--CCEEeCceeCcc
Confidence 35 5875 456999999 999999999986543 2232 579999998764
No 100
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=81.40 E-value=0.94 Score=39.92 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=31.1
Q ss_pred hhHHHHHHHcCCCCCCchHHHHHHHHHccChHh
Q 011246 2 KELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEG 34 (490)
Q Consensus 2 ~eL~~~L~~~g~~k~G~K~~L~~r~l~ll~~~~ 34 (490)
.+|.+++.-|+++++|.|.||++||++-|..+.
T Consensus 78 ~~L~~~c~iL~l~~~g~keelv~ril~FL~~P~ 110 (131)
T 2jx3_A 78 AMLKSICEVLDLERSGVNSELVKRILNFLMHPK 110 (131)
T ss_dssp HHHHHHHHTTTCCSCSCHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHhCcc
Confidence 579999999999999999999999999998887
No 101
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.23 E-value=0.3 Score=37.49 Aligned_cols=48 Identities=15% Similarity=0.326 Sum_probs=33.6
Q ss_pred eecCCCCccccccccCCCCcCcccccCHHHHHHHHcCCCeeecCCCCCCCCCC
Q 011246 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLE 381 (490)
Q Consensus 329 sL~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~~ 381 (490)
.+.|||-+..+..|+.. .|.|.-|. .=+...... ...||+|.+.+...
T Consensus 15 ~~~C~IC~~~~~~~~~~-~CgH~fC~--~Ci~~~~~~--~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSL-PCKHVFCY--LCVKGASWL--GKRCALCRQEIPED 62 (71)
T ss_dssp CCBCSSSSSBCSSEEEE-TTTEEEEH--HHHHHCTTC--SSBCSSSCCBCCHH
T ss_pred CCCCccCCcccCCCEEc-cCCCHHHH--HHHHHHHHC--CCcCcCcCchhCHh
Confidence 34799999999999776 69998554 333332222 36899999887543
No 102
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.88 E-value=0.93 Score=37.00 Aligned_cols=54 Identities=17% Similarity=0.437 Sum_probs=38.0
Q ss_pred ceec-cCCCCC--CCCCeeeeeCCCcCccccccccccCCCCCc-cccCCCCceecccceecc
Q 011246 82 KIFC-PCGTSL--PSESKIQCVDPRCLVQQHISCVIIPEKPME-EIRLLPPLFFCETCRIKR 139 (490)
Q Consensus 82 ~~rC-iCg~s~--~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~-~~p~~p~~f~C~~Crl~~ 139 (490)
...| +|+... ..+.||.|+. |...+|..|++.+..... .+| ...++|..|+...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~--C~~~yH~~Cl~Ppl~~~~~~~p--~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQE--CHNLYHQDCHKPQVTDKEVNDP--RLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSS--SCCEEETTTSSSCCCHHHHHCT--TCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCC--CCCeEcCccCCCcccccccCCC--CCCeeCccccchh
Confidence 3345 687653 3578999999 999999999997643100 112 3679999998764
No 103
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.01 E-value=0.92 Score=34.99 Aligned_cols=46 Identities=22% Similarity=0.446 Sum_probs=32.1
Q ss_pred cCCCCccccccc--cCCCCcCcccccC-HHHHHHHHcCCCeeecCCCCCCCCCC
Q 011246 331 RCPMSGSRIRVA--GRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLE 381 (490)
Q Consensus 331 ~CPls~~ri~~P--~R~~~C~HlQCFD-l~~fL~~~~~~~~W~CPiC~k~~~~~ 381 (490)
.|||-+..+..+ ++...|.|.-|.+ +..|+..+ ..||+|.+.+.+.
T Consensus 25 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-----~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 25 LCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-----RTCPICRADSGPS 73 (75)
T ss_dssp EETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-----SSCTTTCCCCCCC
T ss_pred CCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-----CcCcCcCCcCCCC
Confidence 588888777765 3445699986665 45566532 4799999887653
No 104
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.79 E-value=1.8 Score=32.02 Aligned_cols=46 Identities=20% Similarity=0.538 Sum_probs=33.1
Q ss_pred eEEeecCCCCccccccccCCCCcCcccccC-HHHHHHHHcCCCeeecCCC
Q 011246 326 IIVNLRCPMSGSRIRVAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPIC 374 (490)
Q Consensus 326 ~~vsL~CPls~~ri~~P~R~~~C~HlQCFD-l~~fL~~~~~~~~W~CPiC 374 (490)
+.-.+.|||-+..+..|+.. .|.|.-|.+ +..|+.. .....+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~--~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGET--SCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHH--CSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHc--CCCCCcCcCC
Confidence 34467899999999999987 899995554 2333432 3356789998
No 105
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.08 E-value=2.3 Score=30.58 Aligned_cols=43 Identities=19% Similarity=0.465 Sum_probs=31.0
Q ss_pred eecCCCCccccccccCCCCcCcccccCHHHHHHHHc-CCCeeecCCC
Q 011246 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQ-RTRKWQCPIC 374 (490)
Q Consensus 329 sL~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~-~~~~W~CPiC 374 (490)
.+.|||-...++.|+. ..|.|.-| ..=+..... ......||+|
T Consensus 15 ~~~C~IC~~~~~~p~~-~~CgH~fC--~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVI-IECGHNFC--KACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSCCC-CSSCCCCC--HHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCCcccCccEe-CCCCCccC--HHHHHHHHHhcCCCCCCCCC
Confidence 4679999999999977 57999944 444444422 2356799998
No 106
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=77.53 E-value=1.6 Score=31.12 Aligned_cols=44 Identities=25% Similarity=0.555 Sum_probs=28.9
Q ss_pred cCCCCcccccc---ccCCCCcCcccccC-HHHHHHHHcCCCeeecCCCCCCCC
Q 011246 331 RCPMSGSRIRV---AGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYS 379 (490)
Q Consensus 331 ~CPls~~ri~~---P~R~~~C~HlQCFD-l~~fL~~~~~~~~W~CPiC~k~~~ 379 (490)
.||+-+..+.. +.+...|.|.-|.+ +..|+... ..||+|.+.+.
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~ 54 (55)
T 2ecm_A 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-----YRCPLCSGPSS 54 (55)
T ss_dssp SCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-----CCCTTSCCSSC
T ss_pred cCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-----CcCCCCCCcCC
Confidence 47777776644 34556799986655 34455432 78999998763
No 107
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=77.13 E-value=2.6 Score=35.45 Aligned_cols=46 Identities=22% Similarity=0.498 Sum_probs=34.6
Q ss_pred ec-cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccce
Q 011246 84 FC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 136 (490)
Q Consensus 84 rC-iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Cr 136 (490)
.| +|+...+...||.|+. |....|..|+.+...++ ....++|+.|+
T Consensus 9 ~C~~C~~~g~~~~ll~C~~--C~~~~H~~Cl~~~~~~~-----~~~~W~C~~C~ 55 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQFFCTT--CGQHYHGMCLDIAVTPL-----KRAGWQCPECK 55 (111)
T ss_dssp CBTTTCCCCCTTTSEECSS--SCCEECTTTTTCCCCTT-----TSTTCCCTTTC
T ss_pred CCcCCCCCCCCcCCeECCC--CCCCcChHHhCCccccc-----cccCccCCcCC
Confidence 45 5887665567899998 99999999999875431 12578888775
No 108
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=76.81 E-value=1.3 Score=37.44 Aligned_cols=50 Identities=20% Similarity=0.381 Sum_probs=35.8
Q ss_pred ecCCCCcccccccc------CCCCcCcccccC-HHHHHHHHcCCCeeecCCCCCCCCCCCee
Q 011246 330 LRCPMSGSRIRVAG------RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI 384 (490)
Q Consensus 330 L~CPls~~ri~~P~------R~~~C~HlQCFD-l~~fL~~~~~~~~W~CPiC~k~~~~~~L~ 384 (490)
+.|||-+..+..|+ ....|.|.=|.+ +..||. .. -.||+|.+.+...++.
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---~~--~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NA--NTCPTCRKKINHKRYH 64 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT---TC--SBCTTTCCBCTTTCEE
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH---hC--CCCCCCCCcCcccccc
Confidence 57999999999884 556899985554 334442 22 3999999998776653
No 109
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=76.20 E-value=1.3 Score=32.41 Aligned_cols=45 Identities=31% Similarity=0.641 Sum_probs=31.9
Q ss_pred ecCCCCccccccccCCCCcCcccccCHHHHHHHHcCCCeeecCCCCCCCCCCC
Q 011246 330 LRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLED 382 (490)
Q Consensus 330 L~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~~~ 382 (490)
|.||+=...+..|+. ..|.|.-|.+--. .....||+|.+.+....
T Consensus 7 ~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~-------~~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 7 LRCQQCQAEAKCPKL-LPCLHTLCSGCLE-------ASGMQCPICQAPWPLGA 51 (56)
T ss_dssp SSCSSSCSSCBCCSC-STTSCCSBTTTCS-------SSSSSCSSCCSSSSCCS
T ss_pred CCceEeCCccCCeEE-cCCCCcccHHHHc-------cCCCCCCcCCcEeecCC
Confidence 469999999999855 4699976544311 13568999998876543
No 110
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=73.65 E-value=2.2 Score=30.51 Aligned_cols=44 Identities=16% Similarity=0.358 Sum_probs=27.1
Q ss_pred cCCCCcccccc---ccCCCCcCcccccCH-HHHHHHHcCCCeeecCCCCCCCC
Q 011246 331 RCPMSGSRIRV---AGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYS 379 (490)
Q Consensus 331 ~CPls~~ri~~---P~R~~~C~HlQCFDl-~~fL~~~~~~~~W~CPiC~k~~~ 379 (490)
.|||-+..+.. +.....|.|.=|.+- ..|+ + ....||+|.+.+.
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~---~--~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL---G--SHSTCPLCRLTVV 54 (55)
T ss_dssp CCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT---T--TCCSCSSSCCCSC
T ss_pred cCccCCccccCCCceEECCCCCCcccHHHHHHHH---H--cCCcCcCCCCEeE
Confidence 47777777665 444446999754442 2333 2 2468999998764
No 111
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=72.44 E-value=2.1 Score=39.69 Aligned_cols=43 Identities=16% Similarity=0.480 Sum_probs=33.0
Q ss_pred cCCCCCCCCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceec
Q 011246 86 PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (490)
Q Consensus 86 iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~ 138 (490)
+|+. .|.++.|+. |....|..|+..+... +| .+.++|+.|+..
T Consensus 7 ~C~~---~g~ll~Cd~--C~~~~H~~Cl~p~l~~---~p--~g~W~C~~C~~~ 49 (189)
T 2ro1_A 7 VCQK---PGDLVMCNQ--CEFCFHLDCHLPALQD---VP--GEEWSCSLCHVL 49 (189)
T ss_dssp TTCC---CSSCCCCTT--TCCBCCSTTSTTCCSS---CC--CTTCCTTTTSCS
T ss_pred cCCC---CCceeECCC--CCchhccccCCCCccc---CC--CCCCCCcCccCC
Confidence 4775 456999999 9999999999765332 22 267999999876
No 112
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=71.58 E-value=4.8 Score=31.81 Aligned_cols=51 Identities=22% Similarity=0.492 Sum_probs=33.7
Q ss_pred ecCCCCccccccc-cCCCC--cCcccccCHHHHHHHHcCCCeeecCCCCCCCCCCCe
Q 011246 330 LRCPMSGSRIRVA-GRFKP--CVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDL 383 (490)
Q Consensus 330 L~CPls~~ri~~P-~R~~~--C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~~~L 383 (490)
+.|||=...+.++ .+... |.|.=|.+ =+..+.. .....||+|.+.+....+
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~--Cl~~~~~-~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRF--CWHRIRT-DENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHH--HHHHHTT-SSCSBCTTTCCBCSSCSS
T ss_pred CcCCccCccCccccccccccCCCCCcCHH--HHHHHHh-cCCCCCCCCCCccCCCch
Confidence 4699988877653 33333 99985543 3334322 246899999999877655
No 113
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.76 E-value=4.3 Score=29.85 Aligned_cols=28 Identities=36% Similarity=0.695 Sum_probs=25.4
Q ss_pred hhHHHHHHHcCCCCCCchHHHHHHHHHc
Q 011246 2 KELKDVLTKLGLPKQGKKQDLVDRIFHQ 29 (490)
Q Consensus 2 ~eL~~~L~~~g~~k~G~K~~L~~r~l~l 29 (490)
.|||--|..+|-+-+|...||++|+-..
T Consensus 14 ~ELQaKLaE~GAPi~g~REElvdRLk~Y 41 (58)
T 2do5_A 14 QELQAKLAEIGAPIQGNREELVERLQSY 41 (58)
T ss_dssp HHHHHHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcccccHHHHHHHHHHH
Confidence 4999999999999999999999998653
No 114
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.07 E-value=1.8 Score=32.29 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=32.0
Q ss_pred eecCCCCcccccccc------CCCCcCcccccCH-HHHHHHHcCCCeeecCCCCCCCC
Q 011246 329 NLRCPMSGSRIRVAG------RFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYS 379 (490)
Q Consensus 329 sL~CPls~~ri~~P~------R~~~C~HlQCFDl-~~fL~~~~~~~~W~CPiC~k~~~ 379 (490)
.+.|||-+..+..|. ....|.|.-|.+- ..|+.. .-.||+|.+.+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKIN 67 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-----CSSCTTTCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-----CCCCCCCCCccC
Confidence 356999999998884 3468999755442 334432 348999998875
No 115
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.84 E-value=3 Score=31.78 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=30.7
Q ss_pred eecCCCCccccccccCCC--CcCcccccC-HHHHHHHHcCCCeeecCCCCCCCC
Q 011246 329 NLRCPMSGSRIRVAGRFK--PCVHTGCFD-LETFVELNQRTRKWQCPICMKNYS 379 (490)
Q Consensus 329 sL~CPls~~ri~~P~R~~--~C~HlQCFD-l~~fL~~~~~~~~W~CPiC~k~~~ 379 (490)
...|||-+..+..|.... .|.|.-|++ +..|+..+ -.||+|.+.+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-----~~CP~Cr~~~~ 63 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-----KVCPLCNMPVL 63 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-----SBCTTTCCBCS
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-----CcCCCcCcccc
Confidence 346999888887665542 699985544 34455432 28999998764
No 116
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=62.92 E-value=4.1 Score=30.52 Aligned_cols=46 Identities=24% Similarity=0.431 Sum_probs=28.9
Q ss_pred ecCCCCccccc--cccCCCCcCcccccC-HHHHHHHHcCCCeeecCCCCCCCCC
Q 011246 330 LRCPMSGSRIR--VAGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSL 380 (490)
Q Consensus 330 L~CPls~~ri~--~P~R~~~C~HlQCFD-l~~fL~~~~~~~~W~CPiC~k~~~~ 380 (490)
..|||=+..+. .+++...|.|.-|++ +..|+..+ ..||+|.+.+..
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-----KKCPICRVDIEA 63 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-----SBCTTTCSBSCS
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-----CCCcCcCccccC
Confidence 35888877664 334556799985544 33444432 359999987754
No 117
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=62.02 E-value=1.4 Score=37.31 Aligned_cols=40 Identities=25% Similarity=0.556 Sum_probs=28.8
Q ss_pred CCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccce
Q 011246 93 SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 136 (490)
Q Consensus 93 ~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Cr 136 (490)
.+.||.|.. |....|..|+++..+..+.++ ...++|+.|+
T Consensus 23 ~~~Ll~C~~--C~~~~H~~Cl~~~~~~~~~~~--~~~W~C~~C~ 62 (112)
T 3v43_A 23 PEELISCAD--CGNSGHPSCLKFSPELTVRVK--ALRWQCIECK 62 (112)
T ss_dssp CCCCEECTT--TCCEECHHHHTCCHHHHHHHH--TSCCCCTTTC
T ss_pred chhceEhhh--cCCCCCCchhcCCHHHHHHhh--ccccccccCC
Confidence 468999999 999999999987432222222 3567788776
No 118
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=60.65 E-value=4.4 Score=33.57 Aligned_cols=49 Identities=24% Similarity=0.463 Sum_probs=31.5
Q ss_pred cCCCCcccccccc-----------------CCCCcCcccccC-HHHHHHHHcCCCeeecCCCCCCCC
Q 011246 331 RCPMSGSRIRVAG-----------------RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYS 379 (490)
Q Consensus 331 ~CPls~~ri~~P~-----------------R~~~C~HlQCFD-l~~fL~~~~~~~~W~CPiC~k~~~ 379 (490)
.|||=+..+..|. +...|.|.=|++ +..||....+...-.||+|.+.+.
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 4888777776654 145699874433 445664443345679999997763
No 119
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.17 E-value=4.6 Score=31.78 Aligned_cols=33 Identities=18% Similarity=0.593 Sum_probs=19.6
Q ss_pred CcCcccccCHHHHHHHHcCCCeeecCCCCCCCCCCCe
Q 011246 347 PCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLEDL 383 (490)
Q Consensus 347 ~C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~~~L 383 (490)
.|.|. |-..=..+--++. -.||+|.+.+.+.++
T Consensus 47 ~C~H~--FH~~Ci~~Wl~~~--~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 47 ECNHS--FHNCCMSLWVKQN--NRCPLCQQDWVVQRI 79 (81)
T ss_dssp TTSCE--EEHHHHHHHTTTC--CBCTTTCCBCCEEEE
T ss_pred CCCCc--cChHHHHHHHHhC--CCCCCcCCCcchhhc
Confidence 59987 5533332222222 289999998766543
No 120
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.16 E-value=5.2 Score=30.86 Aligned_cols=43 Identities=21% Similarity=0.406 Sum_probs=31.6
Q ss_pred eecCCCCccccccccCCCCcCcc-cccCHHHHHHHHcCCCeeecCCCCCCCCC
Q 011246 329 NLRCPMSGSRIRVAGRFKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYSL 380 (490)
Q Consensus 329 sL~CPls~~ri~~P~R~~~C~Hl-QCFDl~~fL~~~~~~~~W~CPiC~k~~~~ 380 (490)
.+.||+-+..+..|+. ..|.|. -|.+-.. ...+||+|.+.+..
T Consensus 25 ~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~--------~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVF-VPCGHLVTCKQCAE--------AVDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCC-SSSCCCCBCHHHHH--------HCSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEE-ecCCCHHHHHHHhh--------CCCCCccCCceecC
Confidence 4579999999888876 579998 5654431 12789999988743
No 121
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=55.99 E-value=2.6 Score=32.65 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=29.8
Q ss_pred ecCCCCccccccccCCCCcCcc-cccCHHHHHHHHcCCCeeecCCCCCCCC
Q 011246 330 LRCPMSGSRIRVAGRFKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYS 379 (490)
Q Consensus 330 L~CPls~~ri~~P~R~~~C~Hl-QCFDl~~fL~~~~~~~~W~CPiC~k~~~ 379 (490)
+.||+=+..+..|+-- .|.|. -|++-..- -..||+|.+.+.
T Consensus 25 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~--------~~~CP~Cr~~i~ 66 (74)
T 4ic3_A 25 KLCKICMDRNIAIVFV-PCGHLVTCKQCAEA--------VDKCPMCYTVIT 66 (74)
T ss_dssp TBCTTTSSSBCCEEEE-TTCCBCCCHHHHTT--------CSBCTTTCCBCS
T ss_pred CCCCCCCCCCCCEEEc-CCCChhHHHHhhhc--------CccCCCcCcCcc
Confidence 4699888888887754 79998 56554221 189999998764
No 122
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=52.77 E-value=4.1 Score=34.20 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=36.0
Q ss_pred ecCCCCcccccccc------CCCCcCcccccC-HHHHHHHHcCCCeeecCCCCCCCCCCCee
Q 011246 330 LRCPMSGSRIRVAG------RFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSLEDLI 384 (490)
Q Consensus 330 L~CPls~~ri~~P~------R~~~C~HlQCFD-l~~fL~~~~~~~~W~CPiC~k~~~~~~L~ 384 (490)
+.||+-...+..|. ....|.|.-|++ +..|+.. ...||+|.+.+..++|.
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKINHKRYH 129 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-----CSBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-----CCCCCCCCCcCChhcce
Confidence 35888888887763 345799987776 4556653 24899999999877764
No 123
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=52.59 E-value=5 Score=30.07 Aligned_cols=45 Identities=24% Similarity=0.471 Sum_probs=29.5
Q ss_pred cCCCCccccccccC-CCCcCcc-cccCHHHHHHHHcCCCeeecCCCCCCCC
Q 011246 331 RCPMSGSRIRVAGR-FKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYS 379 (490)
Q Consensus 331 ~CPls~~ri~~P~R-~~~C~Hl-QCFDl~~fL~~~~~~~~W~CPiC~k~~~ 379 (490)
.|++-+.+.+.++= ...|.|+ -|++-..-+. ++ .++||+|.+++.
T Consensus 9 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~--~~--~~~CPiCR~~i~ 55 (63)
T 2vje_B 9 PCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLK--KA--GASCPICKKEIQ 55 (63)
T ss_dssp BCTTTSSSBSCEEEEETTEEEEEECHHHHHHHH--HT--TCBCTTTCCBCC
T ss_pred CCcccCCcCCCeEEEecCCCCHhHHHHHHHHHH--Hh--CCcCCCcCchhh
Confidence 48877777665542 2379998 5666554332 22 389999998873
No 124
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.85 E-value=2.4 Score=31.92 Aligned_cols=48 Identities=21% Similarity=0.427 Sum_probs=32.0
Q ss_pred eecCCCCccccccccCCCCcCcccccCHHHHHHHHcCCCeeecCCCCCCCCCCC
Q 011246 329 NLRCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSLED 382 (490)
Q Consensus 329 sL~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~~~ 382 (490)
.+.|||-+..+.. ....|.|. |-..=+..... ....||+|.+.+...+
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~--fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHS--FCQKCIDKWSD--RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEE--ECHHHHHHSSC--CCSSCHHHHHCTTCCC
T ss_pred CCCCeeCCcCccC--cccCCCCc--ccHHHHHHHHH--CcCcCCCcCCcccCCC
Confidence 4568888888776 55679998 44444433222 4678999998776443
No 125
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=48.48 E-value=6.9 Score=29.36 Aligned_cols=45 Identities=20% Similarity=0.455 Sum_probs=29.5
Q ss_pred cCCCCccccccccC-CCCcCcc-cccCHHHHHHHHcCCCeeecCCCCCCCC
Q 011246 331 RCPMSGSRIRVAGR-FKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYS 379 (490)
Q Consensus 331 ~CPls~~ri~~P~R-~~~C~Hl-QCFDl~~fL~~~~~~~~W~CPiC~k~~~ 379 (490)
.|++-+.+.+.++- ...|.|+ -|++=..-+. . ..+.||+|.+.+.
T Consensus 10 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~--~--~~~~CPiCR~~i~ 56 (64)
T 2vje_A 10 PCVICQGRPKNGCIVHGKTGHLMACFTCAKKLK--K--RNKPCPVCRQPIQ 56 (64)
T ss_dssp CCTTTSSSCSCEEEEETTEEEEEECHHHHHHHH--H--TTCCCTTTCCCCC
T ss_pred CCCcCCCCCCCEEEECCCCCChhhHHHHHHHHH--H--cCCcCCCcCcchh
Confidence 48887777777653 2379998 4655443322 2 2478999998873
No 126
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=48.31 E-value=2.5 Score=32.06 Aligned_cols=14 Identities=29% Similarity=1.020 Sum_probs=11.0
Q ss_pred cCCCeeecCCCCCC
Q 011246 364 QRTRKWQCPICMKN 377 (490)
Q Consensus 364 ~~~~~W~CPiC~k~ 377 (490)
...++|+||+|+..
T Consensus 29 ~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 29 YRAKLWACNFCYQR 42 (59)
T ss_dssp GGGTEEECSSSCCE
T ss_pred CCCCEEEcccCCCc
Confidence 45679999999853
No 127
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=48.15 E-value=8.7 Score=30.71 Aligned_cols=46 Identities=20% Similarity=0.444 Sum_probs=27.3
Q ss_pred ecCCCCcccccc--ccCCCCcCcccccC-HHHHHHHHcCCCeeecCCCCCCCCC
Q 011246 330 LRCPMSGSRIRV--AGRFKPCVHTGCFD-LETFVELNQRTRKWQCPICMKNYSL 380 (490)
Q Consensus 330 L~CPls~~ri~~--P~R~~~C~HlQCFD-l~~fL~~~~~~~~W~CPiC~k~~~~ 380 (490)
..|||-...+.. +++...|.|.-|++ +..|+. + .-.||+|.+.+.+
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~---~--~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ---K--SGTCPVCRCMFPP 89 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT---T--TCBCTTTCCBSSC
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH---c--CCcCcCcCccCCC
Confidence 358877766654 23334599874443 334442 2 2389999988754
No 128
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=46.70 E-value=5.5 Score=28.73 Aligned_cols=12 Identities=33% Similarity=1.151 Sum_probs=9.4
Q ss_pred CCeeecCCCCCC
Q 011246 366 TRKWQCPICMKN 377 (490)
Q Consensus 366 ~~~W~CPiC~k~ 377 (490)
...|.||+|+..
T Consensus 28 P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 28 PDDWCCPVCGVS 39 (46)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 446999999954
No 129
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=43.87 E-value=4.9 Score=34.10 Aligned_cols=40 Identities=23% Similarity=0.556 Sum_probs=28.0
Q ss_pred CCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccce
Q 011246 93 SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCR 136 (490)
Q Consensus 93 ~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Cr 136 (490)
.+.||.|.. |....|..|+.+....++.++ ...++|+.|+
T Consensus 20 ~~~Li~C~~--C~~~~H~~Cl~~~~~~~~~~~--~~~W~C~~C~ 59 (114)
T 2kwj_A 20 PEELVSCAD--CGRSGHPTCLQFTLNMTEAVK--TYKWQCIECK 59 (114)
T ss_dssp CCCCEECSS--SCCEECTTTTTCCHHHHHHHH--HTTCCCGGGC
T ss_pred CCCCeEeCC--CCCccchhhCCChhhhhhccC--CCccCccccC
Confidence 468999999 999999999997643221222 1357777664
No 130
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=43.56 E-value=7.4 Score=30.99 Aligned_cols=10 Identities=60% Similarity=1.713 Sum_probs=8.9
Q ss_pred CCeeecCCCC
Q 011246 366 TRKWQCPICM 375 (490)
Q Consensus 366 ~~~W~CPiC~ 375 (490)
..+|.||||.
T Consensus 15 ~~tWVCpICs 24 (76)
T 2j9u_B 15 VSTWVCPICM 24 (76)
T ss_dssp CEEEECTTTC
T ss_pred ccceECcccc
Confidence 4689999999
No 131
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7
Probab=42.24 E-value=16 Score=35.53 Aligned_cols=28 Identities=29% Similarity=0.540 Sum_probs=26.1
Q ss_pred hhHHHHHHHcCCCCCCchHHHHHHHHHc
Q 011246 2 KELKDVLTKLGLPKQGKKQDLVDRIFHQ 29 (490)
Q Consensus 2 ~eL~~~L~~~g~~k~G~K~~L~~r~l~l 29 (490)
+-||.|....|++.+|.|.+|++|+.+.
T Consensus 7 ~~L~~l~~~~G~~~sg~K~~l~~rl~~~ 34 (258)
T 1kcf_A 7 SFLQHICKLTGLSRSGRKDELLRRIVDS 34 (258)
T ss_dssp HHHHHHHHHTTCCCCSCTTHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHhc
Confidence 5799999999999999999999999885
No 132
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=41.35 E-value=24 Score=27.48 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=27.3
Q ss_pred CCCeeeeeCCCcCccccccccccCCCCCccccCCCCceecccceeccCCccce
Q 011246 93 SESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWI 145 (490)
Q Consensus 93 ~~~mIqC~~~~C~v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~~~dPF~~ 145 (490)
....|||+++.|.+|-...=.. ... .+|+.++|-+- .||.+.
T Consensus 15 ~~~WVQCd~p~C~KWR~LP~~~-~~~------~lpd~W~C~mN----~d~~~~ 56 (69)
T 2e61_A 15 CLVWVQCSFPNCGKWRRLCGNI-DPS------VLPDNWSCDQN----TDVQYN 56 (69)
T ss_dssp CCCEEECSSTTTCCEEECCSSC-CTT------TSCTTCCGGGC----SCGGGC
T ss_pred CCeEEEeCccccCcccCCcccc-ccc------cCCCcCEeCCC----CCCccC
Confidence 4569999966799998763222 111 26899999652 366553
No 133
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=39.27 E-value=18 Score=31.45 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=25.3
Q ss_pred ChhHHHHHHHcCCCCCC--chHHHHHHHHHc
Q 011246 1 MKELKDVLTKLGLPKQG--KKQDLVDRIFHQ 29 (490)
Q Consensus 1 ~~eL~~~L~~~g~~k~G--~K~~L~~r~l~l 29 (490)
++||+++...+|++... +|++|+.++|.-
T Consensus 11 ~~eL~eiAk~LgI~~~s~mrKqeLI~~IL~~ 41 (130)
T 1a62_A 11 VSELITLGENMGLENLARMRKQDIIFAILKQ 41 (130)
T ss_dssp HHHHHHHHHTTTCCCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccccCHHHHHHHHHHH
Confidence 47999999999999877 999999988763
No 134
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=38.13 E-value=3.4 Score=33.43 Aligned_cols=16 Identities=44% Similarity=0.872 Sum_probs=13.3
Q ss_pred eecCCCCCCCCCCCee
Q 011246 369 WQCPICMKNYSLEDLI 384 (490)
Q Consensus 369 W~CPiC~k~~~~~~L~ 384 (490)
-+||+|++.+...+|+
T Consensus 9 ~~~PlCG~~L~W~eLI 24 (95)
T 2k5c_A 9 AKCPICGSPLKWEELI 24 (95)
T ss_dssp EECSSSCCEECHHHHH
T ss_pred ccCCcCCCccCHHHHH
Confidence 5899999999877664
No 135
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=37.97 E-value=10 Score=27.93 Aligned_cols=12 Identities=33% Similarity=1.248 Sum_probs=9.5
Q ss_pred CCeeecCCCCCC
Q 011246 366 TRKWQCPICMKN 377 (490)
Q Consensus 366 ~~~W~CPiC~k~ 377 (490)
...|.||+|+..
T Consensus 34 P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 34 PDDWACPVCGAS 45 (52)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCcCCCCCCc
Confidence 347999999964
No 136
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=37.89 E-value=7.6 Score=30.53 Aligned_cols=40 Identities=23% Similarity=0.433 Sum_probs=27.6
Q ss_pred cCCCCccccccccCCCCcCcc-cccCHHHHHHHHcCCCeeecCCCCCCCC
Q 011246 331 RCPMSGSRIRVAGRFKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYS 379 (490)
Q Consensus 331 ~CPls~~ri~~P~R~~~C~Hl-QCFDl~~fL~~~~~~~~W~CPiC~k~~~ 379 (490)
.|++=+.....|+- ..|.|. -|++-.. ..|.||+|...+.
T Consensus 20 ~C~IC~~~~~~~v~-~pCgH~~~C~~C~~--------~~~~CP~Cr~~i~ 60 (79)
T 2yho_A 20 LCMVCCEEEINSTF-CPCGHTVCCESCAA--------QLQSCPVCRSRVE 60 (79)
T ss_dssp BCTTTSSSBCCEEE-ETTCBCCBCHHHHT--------TCSBCTTTCCBCC
T ss_pred EeEEeCcccCcEEE-ECCCCHHHHHHHHH--------hcCcCCCCCchhh
Confidence 58887777776654 379998 4554332 2269999998874
No 137
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=37.69 E-value=9.1 Score=28.50 Aligned_cols=12 Identities=33% Similarity=1.154 Sum_probs=9.5
Q ss_pred CCeeecCCCCCC
Q 011246 366 TRKWQCPICMKN 377 (490)
Q Consensus 366 ~~~W~CPiC~k~ 377 (490)
...|.||+|+..
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 457999999954
No 138
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=37.69 E-value=9.1 Score=38.78 Aligned_cols=43 Identities=21% Similarity=0.408 Sum_probs=32.9
Q ss_pred EeecCCCCccccccccCCCCcCcc-cccCHHHHHHHHcCCCeeecCCCCCCCC
Q 011246 328 VNLRCPMSGSRIRVAGRFKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYS 379 (490)
Q Consensus 328 vsL~CPls~~ri~~P~R~~~C~Hl-QCFDl~~fL~~~~~~~~W~CPiC~k~~~ 379 (490)
-.+.||+-...+..|+.- .|.|. -|.+-..-+ +.||+|...+.
T Consensus 294 ~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~--------~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL--------RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC--------SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC--------CcCCCCCCCcc
Confidence 357899999999988876 79998 666554311 79999998864
No 139
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=37.60 E-value=10 Score=28.29 Aligned_cols=12 Identities=33% Similarity=0.963 Sum_probs=9.6
Q ss_pred CCeeecCCCCCC
Q 011246 366 TRKWQCPICMKN 377 (490)
Q Consensus 366 ~~~W~CPiC~k~ 377 (490)
...|.||+|+..
T Consensus 34 P~dw~CP~Cga~ 45 (55)
T 2v3b_B 34 PADWVCPDCGVG 45 (55)
T ss_dssp CTTCCCTTTCCC
T ss_pred CCCCcCCCCCCC
Confidence 457999999964
No 140
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=36.15 E-value=10 Score=27.97 Aligned_cols=12 Identities=33% Similarity=1.154 Sum_probs=9.6
Q ss_pred CCeeecCCCCCC
Q 011246 366 TRKWQCPICMKN 377 (490)
Q Consensus 366 ~~~W~CPiC~k~ 377 (490)
...|.||+|+..
T Consensus 33 P~dw~CP~Cg~~ 44 (52)
T 1yk4_A 33 PDDWVCPLCGAP 44 (52)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 457999999964
No 141
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.75 E-value=21 Score=27.11 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=26.3
Q ss_pred cCCCCccccccccCCCCcCcc-cccCHHHHHHHHcCCCeeecCCCCCCCC
Q 011246 331 RCPMSGSRIRVAGRFKPCVHT-GCFDLETFVELNQRTRKWQCPICMKNYS 379 (490)
Q Consensus 331 ~CPls~~ri~~P~R~~~C~Hl-QCFDl~~fL~~~~~~~~W~CPiC~k~~~ 379 (490)
.|++=+.+...++ ...|.|+ -|.+-.. ..++||+|.+.+.
T Consensus 17 ~C~IC~~~~~~~v-~~pCgH~~~C~~C~~--------~~~~CP~CR~~i~ 57 (68)
T 2ea5_A 17 DCVVCQNGTVNWV-LLPCRHTCLCDGCVK--------YFQQCPMCRQFVQ 57 (68)
T ss_dssp CCSSSSSSCCCCE-ETTTTBCCSCTTHHH--------HCSSCTTTCCCCC
T ss_pred CCCCcCcCCCCEE-EECCCChhhhHHHHh--------cCCCCCCCCcchh
Confidence 5777776655432 3468887 5665544 1389999998774
No 142
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=33.85 E-value=12 Score=30.14 Aligned_cols=12 Identities=33% Similarity=1.035 Sum_probs=9.4
Q ss_pred CCeeecCCCCCC
Q 011246 366 TRKWQCPICMKN 377 (490)
Q Consensus 366 ~~~W~CPiC~k~ 377 (490)
...|.||+|+..
T Consensus 58 PddW~CPvCga~ 69 (81)
T 2kn9_A 58 PDDWSCPDCGAA 69 (81)
T ss_dssp CTTCCCTTTCCC
T ss_pred CCCCcCCCCCCC
Confidence 346999999964
No 143
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=33.27 E-value=12 Score=29.31 Aligned_cols=12 Identities=25% Similarity=0.866 Sum_probs=9.6
Q ss_pred CCeeecCCCCCC
Q 011246 366 TRKWQCPICMKN 377 (490)
Q Consensus 366 ~~~W~CPiC~k~ 377 (490)
...|.||+|+..
T Consensus 38 Pddw~CP~Cga~ 49 (70)
T 1dx8_A 38 SDSFMCPACRSP 49 (70)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 446999999964
No 144
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=30.90 E-value=18 Score=30.31 Aligned_cols=45 Identities=33% Similarity=0.636 Sum_probs=33.4
Q ss_pred cCCCCccccccccCCCCcCcccccCHHHHHHHHcCCCeeecCCCCCCC
Q 011246 331 RCPMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKWQCPICMKNY 378 (490)
Q Consensus 331 ~CPls~~ri~~P~R~~~C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~ 378 (490)
-||.-...|++=+|-..|+|.=|+|-..-... ...=.||.|..++
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~---~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEK---KGDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHH---TTCCBCTTTCCBC
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHh---ccCCCCcCcCCee
Confidence 37777788889899999999988887654432 2335799999665
No 145
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.26 E-value=16 Score=29.22 Aligned_cols=52 Identities=23% Similarity=0.353 Sum_probs=36.4
Q ss_pred ecCCCCccccccccCC--CCcCcccccC-HHHHHHHH--cC-CCeeecCC--CCCC--CCCC
Q 011246 330 LRCPMSGSRIRVAGRF--KPCVHTGCFD-LETFVELN--QR-TRKWQCPI--CMKN--YSLE 381 (490)
Q Consensus 330 L~CPls~~ri~~P~R~--~~C~HlQCFD-l~~fL~~~--~~-~~~W~CPi--C~k~--~~~~ 381 (490)
+.|||=+..+..|.-. ..|.|.=|.+ +..|++.. +. ....+||. |... +.++
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 4699888887777543 3699987776 56677653 22 24689999 9988 5543
No 146
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=29.03 E-value=17 Score=29.71 Aligned_cols=12 Identities=33% Similarity=0.985 Sum_probs=9.6
Q ss_pred CCeeecCCCCCC
Q 011246 366 TRKWQCPICMKN 377 (490)
Q Consensus 366 ~~~W~CPiC~k~ 377 (490)
...|.||+|+..
T Consensus 66 PddW~CPvCga~ 77 (87)
T 1s24_A 66 PDDWCCPDCGAT 77 (87)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCCCCCCCCC
Confidence 457999999964
No 147
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.09 E-value=29 Score=19.63 Aligned_cols=14 Identities=29% Similarity=0.805 Sum_probs=10.9
Q ss_pred eeecCCCCCCCCCC
Q 011246 368 KWQCPICMKNYSLE 381 (490)
Q Consensus 368 ~W~CPiC~k~~~~~ 381 (490)
.+.|+.|++.+...
T Consensus 2 ~~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 2 EHKCPHCDKKFNQV 15 (29)
T ss_dssp CCCCSSCCCCCCTT
T ss_pred CCcCCCCCcccCCH
Confidence 47899999887543
No 148
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.55 E-value=19 Score=20.53 Aligned_cols=13 Identities=15% Similarity=0.754 Sum_probs=10.4
Q ss_pred CeeecCCCCCCCC
Q 011246 367 RKWQCPICMKNYS 379 (490)
Q Consensus 367 ~~W~CPiC~k~~~ 379 (490)
..+.|+.|++.+.
T Consensus 2 k~~~C~~C~k~f~ 14 (27)
T 2kvh_A 2 KPFSCSLCPQRSR 14 (27)
T ss_dssp CCEECSSSSCEES
T ss_pred cCccCCCcChhhC
Confidence 3589999998764
No 149
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.95 E-value=26 Score=19.99 Aligned_cols=13 Identities=15% Similarity=0.861 Sum_probs=10.3
Q ss_pred eeecCCCCCCCCC
Q 011246 368 KWQCPICMKNYSL 380 (490)
Q Consensus 368 ~W~CPiC~k~~~~ 380 (490)
.+.|++|++.+..
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 1ard_A 2 SFVCEVCTRAFAR 14 (29)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 4799999988653
No 150
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=24.73 E-value=27 Score=21.61 Aligned_cols=14 Identities=36% Similarity=0.973 Sum_probs=11.2
Q ss_pred CeeecCCCCCCCCC
Q 011246 367 RKWQCPICMKNYSL 380 (490)
Q Consensus 367 ~~W~CPiC~k~~~~ 380 (490)
..++|++|++.+.-
T Consensus 10 k~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 10 KPFQCPDCDRSFSR 23 (37)
T ss_dssp SSBCCTTTCCCBSS
T ss_pred CCccCCCCCcccCc
Confidence 46999999988753
No 151
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=24.43 E-value=30 Score=19.76 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=10.4
Q ss_pred eeecCCCCCCCCC
Q 011246 368 KWQCPICMKNYSL 380 (490)
Q Consensus 368 ~W~CPiC~k~~~~ 380 (490)
.+.|++|++.+..
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1klr_A 2 TYQCQYCEFRSAD 14 (30)
T ss_dssp CCCCSSSSCCCSC
T ss_pred CccCCCCCCccCC
Confidence 4789999988754
No 152
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=24.21 E-value=24 Score=36.39 Aligned_cols=48 Identities=19% Similarity=0.390 Sum_probs=34.3
Q ss_pred ecCCCCccccccccCCCCcCcccccCH-HHHHHHHcCCCeeecCCCCCCCCCCC
Q 011246 330 LRCPMSGSRIRVAGRFKPCVHTGCFDL-ETFVELNQRTRKWQCPICMKNYSLED 382 (490)
Q Consensus 330 L~CPls~~ri~~P~R~~~C~HlQCFDl-~~fL~~~~~~~~W~CPiC~k~~~~~~ 382 (490)
+.||+-...+..|+. ..|.|.=|.+- ..|+.. ..-.||+|.+.+....
T Consensus 333 ~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~----~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 333 QLCKICAENDKDVKI-EPCGHLMCTSCLTSWQES----EGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHH----TCSBCTTTCCBCCEEE
T ss_pred CCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhc----CCCCCCCCCCccCCce
Confidence 679999999888866 57999866553 334431 3458999999886543
No 153
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=23.89 E-value=22 Score=27.67 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=13.9
Q ss_pred HcCCCeeecCCCCCCCCC
Q 011246 363 NQRTRKWQCPICMKNYSL 380 (490)
Q Consensus 363 ~~~~~~W~CPiC~k~~~~ 380 (490)
....++-.||+|++++..
T Consensus 4 m~~~~~~~CP~Cgkp~~W 21 (68)
T 1lv3_A 4 MSETITVNCPTCGKTVVW 21 (68)
T ss_dssp CCCCCEEECTTTCCEEEC
T ss_pred CCCCCcCcCCCCCCcccc
Confidence 345678899999999754
No 154
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A
Probab=23.16 E-value=1.5e+02 Score=34.21 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=41.8
Q ss_pred eeeEEEEeCHhhHHhhcCCCceEEEEEEeecCCCccccCCCcceEEEEcCeEEeecCCCCcccCCCCCCCCCCccccccc
Q 011246 171 KAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIG 250 (490)
Q Consensus 171 ~~~~~F~Lt~~~~~~l~~~~~~lql~C~~l~d~~~~~~~wP~~~~i~VNg~~v~~~~rp~~~~~g~~~r~~~p~IT~~lk 250 (490)
.-.++|.+..+... . -++.|..-.++ ...+|.|||+.|-.. ..+ .++-..+||++|+
T Consensus 115 ~Yrr~f~vp~~~~~---~--~~v~L~F~gv~----------~~a~V~vNG~~vG~~-~gg-------~~p~~~DIT~~lk 171 (1032)
T 3oba_A 115 VYARTFELDSKSIE---S--FEHRLRFEGVD----------NCYELYVNGQYVGFN-KGS-------RNGAEFDIQKYVS 171 (1032)
T ss_dssp EEEEEEEECHHHHH---H--EEEEEEESCEE----------SEEEEEETTEEEEEE-ECT-------TSCEEEECTTTCC
T ss_pred EEEEEEEECchhcC---C--CEEEEEECCcc----------eeEEEEECCEEEEEE-eCC-------cccEEEEChhhcc
Confidence 45678999876311 1 23444433221 458999999988642 111 1223456999999
Q ss_pred CcccEEEEEE
Q 011246 251 EGVNQISLSG 260 (490)
Q Consensus 251 ~g~N~I~is~ 260 (490)
.|.|.|.|..
T Consensus 172 ~G~N~L~V~V 181 (1032)
T 3oba_A 172 EGENLVVVKV 181 (1032)
T ss_dssp SEEEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 9999998864
No 155
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=22.96 E-value=18 Score=32.16 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=35.5
Q ss_pred eec-cCCCCCCCCCeeeeeCCCcCccccccccccCCCC--CccccCCCCceecccceec
Q 011246 83 IFC-PCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKP--MEEIRLLPPLFFCETCRIK 138 (490)
Q Consensus 83 ~rC-iCg~s~~~~~mIqC~~~~C~v~qH~~Cv~~~~k~--~~~~p~~p~~f~C~~Crl~ 138 (490)
.+| +|+. .|.++-|+. |..-+|..|+..+-.+ ++.+..-.+.+.|+.|+..
T Consensus 64 d~C~vC~~---GG~LlcCD~--Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 64 EQCRWCAE---GGNLICCDF--CHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CSCSSSCC---CSSEEECSS--SCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CeecccCC---CCcEEeCCC--CCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 445 4665 677999999 9999999999965432 1111112368999999864
No 156
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.28 E-value=26 Score=19.98 Aligned_cols=13 Identities=38% Similarity=1.063 Sum_probs=10.3
Q ss_pred eeecCCCCCCCCC
Q 011246 368 KWQCPICMKNYSL 380 (490)
Q Consensus 368 ~W~CPiC~k~~~~ 380 (490)
.++|++|++.+..
T Consensus 3 ~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 3 PYSCSVCGKRFSL 15 (28)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCCCcccCC
Confidence 5899999987643
No 157
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.04 E-value=30 Score=21.13 Aligned_cols=14 Identities=21% Similarity=0.686 Sum_probs=11.2
Q ss_pred CeeecCCCCCCCCC
Q 011246 367 RKWQCPICMKNYSL 380 (490)
Q Consensus 367 ~~W~CPiC~k~~~~ 380 (490)
..+.|++|++.+..
T Consensus 8 ~~~~C~~C~k~f~~ 21 (36)
T 2elr_A 8 KTHLCDMCGKKFKS 21 (36)
T ss_dssp SSCBCTTTCCBCSS
T ss_pred CCeecCcCCCCcCc
Confidence 46999999988753
No 158
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.37 E-value=19 Score=20.34 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=10.1
Q ss_pred eeecCCCCCCCCC
Q 011246 368 KWQCPICMKNYSL 380 (490)
Q Consensus 368 ~W~CPiC~k~~~~ 380 (490)
.+.|++|++.+.-
T Consensus 2 p~~C~~C~k~f~~ 14 (26)
T 2lvu_A 2 PYVCERCGKRFVQ 14 (26)
Confidence 4789999987653
No 159
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=21.16 E-value=39 Score=28.09 Aligned_cols=31 Identities=16% Similarity=0.487 Sum_probs=18.1
Q ss_pred CCcCcccccCHHHHHHHHcCCCeeecCCCCCCCCC
Q 011246 346 KPCVHTGCFDLETFVELNQRTRKWQCPICMKNYSL 380 (490)
Q Consensus 346 ~~C~HlQCFDl~~fL~~~~~~~~W~CPiC~k~~~~ 380 (490)
..|.|. |-..=...--.+ .-.||+|.+...+
T Consensus 71 ~~C~H~--FH~~Ci~~Wl~~--~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 71 GVCNHA--FHFHCISRWLKT--RQVCPLDNREWEF 101 (106)
T ss_dssp ETTSCE--EEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred cccCcE--ECHHHHHHHHHc--CCcCcCCCCccee
Confidence 468876 444433332222 3579999987644
No 160
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.79 E-value=28 Score=19.74 Aligned_cols=12 Identities=25% Similarity=0.739 Sum_probs=9.6
Q ss_pred eeecCCCCCCCC
Q 011246 368 KWQCPICMKNYS 379 (490)
Q Consensus 368 ~W~CPiC~k~~~ 379 (490)
.+.|++|++.+.
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2m0f_A 2 PLKCRECGKQFT 13 (29)
T ss_dssp CEECTTTSCEES
T ss_pred CccCCCCCCccC
Confidence 489999998754
No 161
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=20.74 E-value=12 Score=25.31 Aligned_cols=15 Identities=40% Similarity=0.866 Sum_probs=11.2
Q ss_pred eecCCCCCCCCCCCe
Q 011246 369 WQCPICMKNYSLEDL 383 (490)
Q Consensus 369 W~CPiC~k~~~~~~L 383 (490)
+.||+|.+.+.-.+.
T Consensus 6 FiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 6 FICPQCMKSLGSADE 20 (34)
T ss_dssp EECTTTCCEESSHHH
T ss_pred cCCcHHHHHcCCHHH
Confidence 789999988754433
No 162
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=20.64 E-value=34 Score=19.17 Aligned_cols=12 Identities=17% Similarity=0.908 Sum_probs=9.6
Q ss_pred eecCCCCCCCCC
Q 011246 369 WQCPICMKNYSL 380 (490)
Q Consensus 369 W~CPiC~k~~~~ 380 (490)
++|++|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 689999988654
No 163
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.43 E-value=78 Score=25.61 Aligned_cols=48 Identities=17% Similarity=0.320 Sum_probs=34.6
Q ss_pred CceeccCCCCCC------CCCeeeeeCCCcC-ccccccccccCCCCCccccCCCCceecccceec
Q 011246 81 GKIFCPCGTSLP------SESKIQCVDPRCL-VQQHISCVIIPEKPMEEIRLLPPLFFCETCRIK 138 (490)
Q Consensus 81 ~~~rCiCg~s~~------~~~mIqC~~~~C~-v~qH~~Cv~~~~k~~~~~p~~p~~f~C~~Crl~ 138 (490)
+...|+|+.--. .-.+|-|.. |+ ..-|..|..+... +..|.|..|+..
T Consensus 25 dA~~Clc~~GR~~~~~~~~W~L~lC~~--Cgs~gtH~~Cs~l~~~--------~~~weC~~C~~v 79 (85)
T 1weq_A 25 DAPICLYEQGRDSFEDEGRWRLILCAT--CGSHGTHRDCSSLRPN--------SKKWECNECLPA 79 (85)
T ss_dssp CCSCCCSTTCSSCCBSSSTTBCEECSS--SCCCEECSGGGTCCTT--------CSCCCCTTTSCC
T ss_pred CccccCCCCCcccccCCCCEEEEeCcc--cCCchhHHHHhCCcCC--------CCCEECCcCccc
Confidence 355678866321 245889999 95 5689999998543 479999999853
Done!