BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011249
(490 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 323 bits (829), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 181/483 (37%), Positives = 270/483 (55%), Gaps = 22/483 (4%)
Query: 12 TFNQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQ---LPGDNLSYARQVFDQIPKCKTQ 68
NQ+KQ+H ++L+ K DQ Y LIR L +P D YAR+V + + + +
Sbjct: 61 NLNQIKQIHGHVLR---KGLDQSCYILTKLIRTLTKLGVPMD--PYARRVIEPV-QFRNP 114
Query: 69 FLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYT 128
FLWT++IR + + F ++I +Y M + + FTFS++L AC + L
Sbjct: 115 FLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDL--------- 165
Query: 129 KIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAG 188
+G AQ F V + M+ Y C ++ A++ +D M E++ ++W +IA
Sbjct: 166 NLGRQFHAQT-FRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAA 224
Query: 189 YGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAM 248
Y + G + A ++F+ + D W AM + QN + A+E + M + +R EV +
Sbjct: 225 YARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTV 284
Query: 249 VGAISACTQLGDVEMAAILAKHVDEGCCDRTNYV--SNALIHMHSKCGYLDLAWREFSRI 306
G ISAC QLG + A + + +++V +ALI M+SKCG ++ A F +
Sbjct: 285 AGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSM 344
Query: 307 KNKDVISYSSMITAFADHGKSQEALDMFLKMRNEG-IEPNQVTFIGVLTACSHGGLVEDG 365
NK+V +YSSMI A HG++QEAL +F M + I+PN VTF+G L ACSH GLV+ G
Sbjct: 345 NNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQG 404
Query: 366 CKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACK 425
+ F+ M + FG++P +H TCMVDLLGR+G+L++A LI G WGALLGAC+
Sbjct: 405 RQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACR 464
Query: 426 VHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGC 485
+H N E+ EIAA HL EL P+ GN LL+N+YAS G W V+ +I E KK+P
Sbjct: 465 IHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAV 524
Query: 486 SWI 488
SW+
Sbjct: 525 SWV 527
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 302 bits (774), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 162/478 (33%), Positives = 264/478 (55%), Gaps = 45/478 (9%)
Query: 55 ARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGV-----LTSGF----- 104
AR VFD++P+ K W +L+ +V ++ ++ +L+ + L GF
Sbjct: 176 ARSVFDRMPE-KNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKK 234
Query: 105 -----------------TFSSVLNACARVPSLLEA-----------------VICGYTKI 130
++++++ A+ + EA ++ GY +
Sbjct: 235 IVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQN 294
Query: 131 GLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYG 190
++++A+ LFD M ERN +SW+AM+AGY M+ AKE +D M +N TW MI GY
Sbjct: 295 RMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYA 354
Query: 191 KCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVG 250
+CG++ EAK +FD++ + D WAAM Y Q+G++ A+ ++ M +E R++ +
Sbjct: 355 QCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSS 414
Query: 251 AISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKD 310
A+S C + +E+ L + +G + +V NAL+ M+ KCG ++ A F + KD
Sbjct: 415 ALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKD 474
Query: 311 VISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFE 370
++S+++MI ++ HG + AL F M+ EG++P+ T + VL+ACSH GLV+ G + F
Sbjct: 475 IVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFY 534
Query: 371 LMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNA 430
MT+ +G+ P ++H CMVDLLGR+G LE AH+L+ + DA WG LLGA +VH N
Sbjct: 535 TMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNT 594
Query: 431 ELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSWI 488
EL E AA + + PE +G LL+N+YAS G+W D +++ + + KK PG SWI
Sbjct: 595 ELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWI 652
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 114/463 (24%), Positives = 199/463 (42%), Gaps = 99/463 (21%)
Query: 47 LPGDNLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTF 106
L AR++FD++P+ + W +I+ +V + + ++ L+ M V +
Sbjct: 106 LRNGEFELARKLFDEMPE-RDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCS----- 159
Query: 107 SSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKA 166
++ GY + G +DDA+ +FD M E+N +SW+A+++ Y M+
Sbjct: 160 -------------WNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEE 206
Query: 167 A-------------------------------KEFYDRMTEKNSVTWVAMIAGYGKCGEV 195
A ++F+D M ++ V+W +I GY + G++
Sbjct: 207 ACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKI 266
Query: 196 REAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISAC 255
EA+++FDE D W AM Y+QN + A E++ M + N EV+ ++
Sbjct: 267 DEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERN----EVSWNAMLAGY 322
Query: 256 TQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYS 315
Q +EMA L D C R N +I +++CG + A F ++ +D +S++
Sbjct: 323 VQGERMEMAKEL---FDVMPC-RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWA 378
Query: 316 SMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACS-----------HGGLV-- 362
+MI ++ G S EAL +F++M EG N+ +F L+ C+ HG LV
Sbjct: 379 AMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG 438
Query: 363 --EDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLI--MDYKDFCDAGTWG 418
E GC G L + C G +E+A+ L M KD +W
Sbjct: 439 GYETGC--------FVGNALLLMYCKC--------GSIEEANDLFKEMAGKDIV---SWN 479
Query: 419 ALLGACKVHVNAELGEIAARHLLELGPE--KTGNSALLANIYA 459
++ H GE+A R + E K ++ ++A + A
Sbjct: 480 TMIAGYSRH---GFGEVALRFFESMKREGLKPDDATMVAVLSA 519
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 149/304 (49%), Gaps = 22/304 (7%)
Query: 122 AVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVT 181
+I GY + G + A++LFD M ER+++SW+ M+ GY N+ A+E ++ M E++ +
Sbjct: 100 GMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCS 159
Query: 182 WVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENV 241
W M++GY + G V +A+ VFD + E + W A+ YVQN + A ++K R+
Sbjct: 160 WNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKS-RENWA 218
Query: 242 RISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWR 301
+S ++G ++ + A+ + R N +I +++ G +D A +
Sbjct: 219 LVSWNCLLGGFVKKKKI-------VEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQ 271
Query: 302 EFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGL 361
F +DV ++++M++ + + +EA ++F KM E N+V++ +L G
Sbjct: 272 LFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM----PERNEVSWNAMLAGYVQG-- 325
Query: 362 VEDGCKQFELMTRVFGIKPLTEHLT--CMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGA 419
++ E+ +F + P T M+ + G++ +A +L D D +W A
Sbjct: 326 -----ERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLF-DKMPKRDPVSWAA 379
Query: 420 LLGA 423
++
Sbjct: 380 MIAG 383
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 126/252 (50%), Gaps = 18/252 (7%)
Query: 124 ICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWV 183
I Y + G ++A R+F M + +S++ M++GY G + A++ +D M E++ V+W
Sbjct: 71 ISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWN 130
Query: 184 AMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRI 243
MI GY + + +A+++F+ + E D W M Y QNG A ++ M ++N
Sbjct: 131 VMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKN--- 187
Query: 244 SEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNY--VS-NALIHMHSKCGYLDLAW 300
+V+ +SA Q +E A +L K R N+ VS N L+ K + A
Sbjct: 188 -DVSWNALLSAYVQNSKMEEACMLFK-------SRENWALVSWNCLLGGFVKKKKIVEAR 239
Query: 301 REFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGG 360
+ F + +DV+S++++IT +A GK EA +F +E + T+ +++
Sbjct: 240 QFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLF----DESPVQDVFTWTAMVSGYIQNR 295
Query: 361 LVEDGCKQFELM 372
+VE+ + F+ M
Sbjct: 296 MVEEARELFDKM 307
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 292 bits (748), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 171/479 (35%), Positives = 263/479 (54%), Gaps = 21/479 (4%)
Query: 11 KTFNQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFL 70
K + +H+ +++T HDQ + LIR+ D++ YA VF + +L
Sbjct: 40 KNIAHVPSIHAKIIRTF---HDQDAFVVFELIRVCSTL-DSVDYAYDVFSYVSNPNV-YL 94
Query: 71 WTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNAC-ARVPSLLEAVICGYTK 129
+T++I V + LY +M VL + +SVL AC +V + A + K
Sbjct: 95 YTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREIHAQVL---K 151
Query: 130 IGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGY 189
+G + R+V M+ Y G + AK+ +D M +++ V MI Y
Sbjct: 152 LGFG----------SSRSV--GLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCY 199
Query: 190 GKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMV 249
+CG ++EA ++F ++ D CW AM V+N A+E+++ M+ ENV +E V
Sbjct: 200 SECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAV 259
Query: 250 GAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNK 309
+SAC+ LG +E+ + V+ + +N+V NALI+M+S+CG ++ A R F +++K
Sbjct: 260 CVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDK 319
Query: 310 DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQF 369
DVISY++MI+ A HG S EA++ F M N G PNQVT + +L ACSHGGL++ G + F
Sbjct: 320 DVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVF 379
Query: 370 ELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVN 429
M RVF ++P EH C+VDLLGR G+LE+A+ I + D G LL ACK+H N
Sbjct: 380 NSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGN 439
Query: 430 AELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSWI 488
ELGE A+ L E +G LL+N+YAS GKWK+S ++ + ++ +K PGCS I
Sbjct: 440 MELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTI 498
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 288 bits (738), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 170/475 (35%), Positives = 259/475 (54%), Gaps = 39/475 (8%)
Query: 45 LQLPGDNLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFR-----QSILLYAKMHRLGV 99
L +PG L YA ++FD+IPK I NHVL + +++ LY +M + GV
Sbjct: 56 LSVPG-ALKYAHKLFDEIPKPDVS------ICNHVLRGSAQSMKPEKTVSLYTEMEKRGV 108
Query: 100 LTSGFTFSSVLNACARVP---------------------SLLEAVICGYTKIGLMDDAQR 138
+TF+ VL AC+++ + A+I + G + A
Sbjct: 109 SPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASE 168
Query: 139 LFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREA 198
LFD A+ + ++WS+M +GYA G + A +D M K+ V W MI G KC E+ A
Sbjct: 169 LFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSA 228
Query: 199 KKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQL 258
+++FD +E D W AM YV GY K A+ ++K MR V ++ +SAC L
Sbjct: 229 RELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVL 288
Query: 259 GDVEMAAILAKHVDE-GCCDRTNYVS----NALIHMHSKCGYLDLAWREFSRIKNKDVIS 313
GD+E L ++ E + YV NALI M++KCG +D A F +K++D+ +
Sbjct: 289 GDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLST 348
Query: 314 YSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMT 373
++++I A H ++ +++MF +M+ + PN+VTFIGV+ ACSH G V++G K F LM
Sbjct: 349 WNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMR 407
Query: 374 RVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELG 433
++ I+P +H CMVD+LGR+GQLE+A + K +A W LLGACK++ N ELG
Sbjct: 408 DMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELG 467
Query: 434 EIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSWI 488
+ A LL + +++G+ LL+NIYAS G+W + V+ M +T KK G S I
Sbjct: 468 KYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLI 522
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 286 bits (732), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 170/539 (31%), Positives = 276/539 (51%), Gaps = 74/539 (13%)
Query: 15 QLKQVHSYLLKTLTKPHDQYHYYAQFLI-RLLQLPGD--NLSYARQVFDQIPKCKTQFLW 71
QLKQ+H+ LL + ++ FLI +L+ ++++ARQVFD +P+ + F W
Sbjct: 36 QLKQIHARLLVLGLQ-------FSGFLITKLIHASSSFGDITFARQVFDDLPRPQI-FPW 87
Query: 72 TSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLL----------- 120
++IR + + HF+ ++L+Y+ M V FTF +L AC+ + L
Sbjct: 88 NAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR 147
Query: 121 ----------EAVICGYTKIGLMDDAQRLFD--SMAERNVISWSAMVAGYANCGNMKAAK 168
+I Y K + A+ +F+ + ER ++SW+A+V+ YA G A
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEAL 207
Query: 169 EFYDRMTEKN-SVTWVAMIA--------------------------------------GY 189
E + +M + + WVA+++ Y
Sbjct: 208 EIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMY 267
Query: 190 GKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMV 249
KCG+V AK +FD++ P+ W AM Y +NGYA+ AI+M+ M ++VR +++
Sbjct: 268 AKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISIT 327
Query: 250 GAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNK 309
AISAC Q+G +E A + ++V ++S+ALI M +KCG ++ A F R ++
Sbjct: 328 SAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDR 387
Query: 310 DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQF 369
DV+ +S+MI + HG+++EA+ ++ M G+ PN VTF+G+L AC+H G+V +G F
Sbjct: 388 DVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFF 447
Query: 370 ELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVN 429
M I P +H C++DLLGR+G L++A+ +I WGALL ACK H +
Sbjct: 448 NRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRH 506
Query: 430 AELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSWI 488
ELGE AA+ L + P TG+ L+N+YA+ W V++ + E K GCSW+
Sbjct: 507 VELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWV 565
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/403 (22%), Positives = 182/403 (45%), Gaps = 60/403 (14%)
Query: 70 LWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTK 129
+ SLI + A +Q ++A++ LG+ SGF + +++A +
Sbjct: 23 FYASLIDSATHKAQLKQ---IHARLLVLGLQFSGFLITKLIHAS--------------SS 65
Query: 130 IGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRM----TEKNSVTWV-- 183
G + A+++FD + + W+A++ GY+ + + A Y M +S T+
Sbjct: 66 FGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHL 125
Query: 184 ---------------------------------AMIAGYGKCGEVREAKKVFDEISEPDA 210
+IA Y KC + A+ VF+ + P+
Sbjct: 126 LKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPER 185
Query: 211 S--CWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILA 268
+ W A+ Y QNG A+E++ MR+ +V+ VA+V ++A T L D++ +
Sbjct: 186 TIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIH 245
Query: 269 KHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQ 328
V + + + +L M++KCG + A F ++K+ ++I +++MI+ +A +G ++
Sbjct: 246 ASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAR 305
Query: 329 EALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCM 388
EA+DMF +M N+ + P+ ++ ++AC+ G +E +E + R + + +
Sbjct: 306 EAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRS-DYRDDVFISSAL 364
Query: 389 VDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAE 431
+D+ + G +E A L+ D D W A++ +H A
Sbjct: 365 IDMFAKCGSVEGAR-LVFDRTLDRDVVVWSAMIVGYGLHGRAR 406
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 285 bits (730), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 154/478 (32%), Positives = 261/478 (54%), Gaps = 46/478 (9%)
Query: 55 ARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLG-----VLTSGFTFSSV 109
AR+VFD +P+ + WT+L++ +V + + L+ KM V+ GF
Sbjct: 98 ARKVFDLMPE-RNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGR 156
Query: 110 LNACARVPSLLE--------AVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANC 161
++ ++ ++ ++I G K G +D+A+ +FD M+ER+VI+W+ MV GY
Sbjct: 157 IDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQN 216
Query: 162 GNMKAAKEFYDRMTEKNSVTWV-------------------------------AMIAGYG 190
+ A++ +D M EK V+W AMI+G G
Sbjct: 217 NRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLG 276
Query: 191 KCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVG 250
+ GE+ +A++VFD + E + + W + + +NG+ A++++ +M+++ VR + ++
Sbjct: 277 QKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLIS 336
Query: 251 AISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKD 310
+S C L + + + D YV++ L+ M+ KCG L + F R +KD
Sbjct: 337 ILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKD 396
Query: 311 VISYSSMITAFADHGKSQEALDMFLKMRNEG-IEPNQVTFIGVLTACSHGGLVEDGCKQF 369
+I ++S+I+ +A HG +EAL +F +M G +PN+VTF+ L+ACS+ G+VE+G K +
Sbjct: 397 IIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIY 456
Query: 370 ELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVN 429
E M VFG+KP+T H CMVD+LGR+G+ +A +I DA WG+LLGAC+ H
Sbjct: 457 ESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQ 516
Query: 430 AELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSW 487
++ E A+ L+E+ PE +G LL+N+YAS G+W D ++ ++ +KSPGCSW
Sbjct: 517 LDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSW 574
Score = 135 bits (340), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 160/311 (51%), Gaps = 21/311 (6%)
Query: 117 PSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTE 176
P I ++IG + +A++LFDS +++ SW++MVAGY + A++ +D M +
Sbjct: 17 PPTANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPD 76
Query: 177 KNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVM 236
+N ++W +++GY K GE+ EA+KVFD + E + W A+ YV NG A ++ M
Sbjct: 77 RNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM 136
Query: 237 RQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYL 296
++N V ++G + Q G ++ A L + + D+ N ++IH K G +
Sbjct: 137 PEKNKVSWTVMLIGFL----QDGRIDDACKLYEMIP----DKDNIARTSMIHGLCKEGRV 188
Query: 297 DLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTAC 356
D A F + + VI++++M+T + + + +A +F M E +V++ +L
Sbjct: 189 DEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMP----EKTEVSWTSMLMGY 244
Query: 357 SHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGT 416
G +ED + FE+M +KP+ M+ LG+ G++ KA + K+ DA +
Sbjct: 245 VQNGRIEDAEELFEVMP----VKPVIA-CNAMISGLGQKGEIAKARRVFDSMKERNDA-S 298
Query: 417 WGALLGACKVH 427
W ++ K+H
Sbjct: 299 WQTVI---KIH 306
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 32/245 (13%)
Query: 52 LSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLN 111
++ AR+VFD + K + W ++I+ H + +++ L+ M + GV + T S+L+
Sbjct: 281 IAKARRVFDSM-KERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILS 339
Query: 112 ACARVPSL---------------------LEAVICGYTKIGLMDDAQRLFDSMAERNVIS 150
CA + SL ++ Y K G + ++ +FD +++I
Sbjct: 340 VCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIM 399
Query: 151 WSAMVAGYANCGNMKAAKEFYDRM-----TEKNSVTWVAMIAGYGKCGEVREAKKVFDEI 205
W+++++GYA+ G + A + + M T+ N VT+VA ++ G V E K+++ +
Sbjct: 400 WNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESM 459
Query: 206 S-----EPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGD 260
+P + +A M + G A+EM M E +++GA +QL
Sbjct: 460 ESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDV 519
Query: 261 VEMAA 265
E A
Sbjct: 520 AEFCA 524
>sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570
OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1
Length = 550
Score = 283 bits (724), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 162/490 (33%), Positives = 259/490 (52%), Gaps = 63/490 (12%)
Query: 58 VFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSG-FTFSSVLNACA-- 114
VF+++P T +LW LI+ + F +++ + +M R G+ +TF V+ C+
Sbjct: 65 VFERVPSPGT-YLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNN 123
Query: 115 ---RVPSLLE-----------------------------------------------AVI 124
RV S + A++
Sbjct: 124 GQVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALV 183
Query: 125 CGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVA 184
Y K G +++A+ +FD M ERN+ SW+A+V G G++ AK+ +D M +++ +++ +
Sbjct: 184 VAYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTS 243
Query: 185 MIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRIS 244
MI GY K G++ A+ +F+E D W+A+ + Y QNG A +++ M +NV+
Sbjct: 244 MIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPD 303
Query: 245 EVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTN-----YVSNALIHMHSKCGYLDLA 299
E MVG +SAC+Q+G E L + VD R N YV ALI M++KCG++D A
Sbjct: 304 EFIMVGLMSACSQMGCFE----LCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRA 359
Query: 300 WREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHG 359
+ F + +D++SY SM+ A HG EA+ +F KM +EGI P++V F +L C
Sbjct: 360 AKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQS 419
Query: 360 GLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGA 419
LVE+G + FELM + + I +H +C+V+LL R+G+L++A+ LI A WG+
Sbjct: 420 RLVEEGLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGS 479
Query: 420 LLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479
LLG C +H N E+ E+ ARHL EL P+ G+ LL+NIYA++ +W D ++ ++E
Sbjct: 480 LLGGCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGI 539
Query: 480 KKSPGCSWIS 489
K G SWIS
Sbjct: 540 TKICGRSWIS 549
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 283 bits (724), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 159/536 (29%), Positives = 273/536 (50%), Gaps = 61/536 (11%)
Query: 7 VPRSKTFNQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCK 66
+P+ NQ+KQ+H+ +++ H+ H + + L NL A +VF+Q+ +
Sbjct: 26 LPKCANLNQVKQLHAQIIRR--NLHEDLHIAPKLISALSLCRQTNL--AVRVFNQVQEPN 81
Query: 67 TQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACA------------ 114
L SLIR H ++ Q+ ++++M R G+ FT+ +L AC+
Sbjct: 82 VH-LCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMH 140
Query: 115 ------------RVPSLL------------------------------EAVICGYTKIGL 132
VP+ L +++ G K G
Sbjct: 141 NHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGE 200
Query: 133 MDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKC 192
+ DA+RLFD M +R++ISW+ M+ GYA C M A E +++M E+N+V+W M+ GY K
Sbjct: 201 LRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKA 260
Query: 193 GEVREAKKVFDEISEP--DASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVG 250
G++ A+ +FD++ P + W + Y + G K A + M ++ A++
Sbjct: 261 GDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVIS 320
Query: 251 AISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKD 310
++ACT+ G + + + + YV NAL+ M++KCG L A+ F+ I KD
Sbjct: 321 ILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKD 380
Query: 311 VISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFE 370
++S+++M+ HG +EA+++F +MR EGI P++VTFI VL +C+H GL+++G F
Sbjct: 381 LVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFY 440
Query: 371 LMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNA 430
M +V+ + P EH C+VDLLGR G+L++A ++ + WGALLGAC++H
Sbjct: 441 SMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEV 500
Query: 431 ELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGCS 486
++ + +L++L P GN +LL+NIYA+ W+ ++ + +K G S
Sbjct: 501 DIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGAS 556
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 282 bits (721), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 169/570 (29%), Positives = 272/570 (47%), Gaps = 97/570 (17%)
Query: 11 KTFNQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLS-YARQVFDQIPKCKTQF 69
K+ N +KQ+H+++L+T+ H FL L YA VF IP
Sbjct: 23 KSLNHIKQLHAHILRTVIN-----HKLNSFLFNLSVSSSSINLSYALNVFSSIPSPPESI 77
Query: 70 LWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLE-------- 121
++ +R+ + R +IL Y ++ +G F+F +L A ++V +L E
Sbjct: 78 VFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVA 137
Query: 122 ---AVICG-----------------------------------------YTKIGLMDDAQ 137
A +C Y + GL+D+A
Sbjct: 138 FKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAF 197
Query: 138 RLFDSMAERNVIS---------------------------------------WSAMVAGY 158
+LF+ M + NV+ +A+V Y
Sbjct: 198 KLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMY 257
Query: 159 ANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTV 218
A G M A+EF+ +M+ +N AM++GY KCG + +A+ +FD+ + D CW M
Sbjct: 258 AGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMIS 317
Query: 219 CYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDR 278
YV++ Y + A+ +++ M ++ V+M ISAC LG ++ A + + +
Sbjct: 318 AYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLES 377
Query: 279 TNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMR 338
++NALI+M++KCG LD F ++ ++V+S+SSMI A + HG++ +AL +F +M+
Sbjct: 378 ELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMK 437
Query: 339 NEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQL 398
E +EPN+VTF+GVL CSH GLVE+G K F MT + I P EH CMVDL GR+ L
Sbjct: 438 QENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLL 497
Query: 399 EKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIY 458
+A +I + WG+L+ AC++H ELG+ AA+ +LEL P+ G L++NIY
Sbjct: 498 REALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIY 557
Query: 459 ASMGKWKDSEIVKMMISETEKKKSPGCSWI 488
A +W+D ++ ++ E K G S I
Sbjct: 558 AREQRWEDVRNIRRVMEEKNVFKEKGLSRI 587
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 281 bits (720), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 159/440 (36%), Positives = 242/440 (55%), Gaps = 14/440 (3%)
Query: 51 NLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVL 110
+L A +VF I K K W S+I V +++ L+ KM V S T VL
Sbjct: 181 DLDSACKVFTTI-KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL 239
Query: 111 NACARVPSL-LEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKE 169
+ACA++ +L +C Y + ++ N+ +AM+ Y CG+++ AK
Sbjct: 240 SACAKIRNLEFGRQVCSYIE-----------ENRVNVNLTLANAMLDMYTKCGSIEDAKR 288
Query: 170 FYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYA-KA 228
+D M EK++VTW M+ GY + A++V + + + D W A+ Y QNG +A
Sbjct: 289 LFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEA 348
Query: 229 AIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIH 288
I +++ Q+N++++++ +V +SAC Q+G +E+ + ++ + +V++ALIH
Sbjct: 349 LIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIH 408
Query: 289 MHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVT 348
M+SKCG L+ + F+ ++ +DV +S+MI A HG EA+DMF KM+ ++PN VT
Sbjct: 409 MYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVT 468
Query: 349 FIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDY 408
F V ACSH GLV++ F M +GI P +H C+VD+LGRSG LEKA I
Sbjct: 469 FTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAM 528
Query: 409 KDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSE 468
WGALLGACK+H N L E+A LLEL P G LL+NIYA +GKW++
Sbjct: 529 PIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVS 588
Query: 469 IVKMMISETEKKKSPGCSWI 488
++ + T KK PGCS I
Sbjct: 589 ELRKHMRVTGLKKEPGCSSI 608
Score = 98.6 bits (244), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 133/279 (47%), Gaps = 16/279 (5%)
Query: 198 AKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQEN-VRISEVAMVGAISACT 256
A+KVFDEI +P++ W + Y +I + M E+ ++ I A
Sbjct: 83 ARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAA 142
Query: 257 QLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSS 316
++ + + L + +V+N+LIH + CG LD A + F+ IK KDV+S++S
Sbjct: 143 EVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNS 202
Query: 317 MITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDG---CKQFELMT 373
MI F G +AL++F KM +E ++ + VT +GVL+AC+ +E G C E
Sbjct: 203 MINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIE-EN 261
Query: 374 RVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELG 433
RV L M+D+ + G +E A L D + D TW +L + + E
Sbjct: 262 RVNVNLTLA---NAMLDMYTKCGSIEDAKRLF-DAMEEKDNVTWTTMLDGYAISEDYE-- 315
Query: 434 EIAARHLLELGPEK--TGNSALLANIYASMGKWKDSEIV 470
AAR +L P+K +AL++ Y GK ++ IV
Sbjct: 316 --AAREVLNSMPQKDIVAWNALIS-AYEQNGKPNEALIV 351
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 280 bits (717), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 150/434 (34%), Positives = 241/434 (55%), Gaps = 19/434 (4%)
Query: 55 ARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACA 114
AR+++D +P K T++I ++ L++ +M V+T
Sbjct: 160 ARKLYDMMP-VKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVT------------- 205
Query: 115 RVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRM 174
+I GY + +D A++LF+ M E+ +SW++M+ GY G ++ A+EF++ M
Sbjct: 206 -----WTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVM 260
Query: 175 TEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYK 234
K + AMI G+G+ GE+ +A++VFD + + D + W M Y + G+ A++++
Sbjct: 261 PMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFA 320
Query: 235 VMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCG 294
M+++ VR S +++ +S C L ++ + H+ D YV++ L+ M+ KCG
Sbjct: 321 QMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCG 380
Query: 295 YLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLT 354
L A F R +KD+I ++S+I+ +A HG +EAL +F +M + G PN+VT I +LT
Sbjct: 381 ELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILT 440
Query: 355 ACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDA 414
ACS+ G +E+G + FE M F + P EH +C VD+LGR+GQ++KA LI DA
Sbjct: 441 ACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDA 500
Query: 415 GTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMI 474
WGALLGACK H +L E+AA+ L E P+ G LL++I AS KW D +V+ +
Sbjct: 501 TVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNM 560
Query: 475 SETEKKKSPGCSWI 488
K PGCSWI
Sbjct: 561 RTNNVSKFPGCSWI 574
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 150/313 (47%), Gaps = 44/313 (14%)
Query: 124 ICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWV 183
I ++IG +++A++ FDS+ + + SW+++V+GY + G K A++ +D M+E+N V+W
Sbjct: 24 ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWN 83
Query: 184 AMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRI 243
+++GY K + EA+ VF+ + E + W AM Y+Q G A ++ M + N +
Sbjct: 84 GLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERN-EV 142
Query: 244 SEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYV-----------SNALIHMHSK 292
S M G + +D+G D+ + S +I +
Sbjct: 143 SWTVMFGGL------------------IDDGRIDKARKLYDMMPVKDVVASTNMIGGLCR 184
Query: 293 CGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGV 352
G +D A F ++ ++V+++++MIT + + + A +F M E +V++ +
Sbjct: 185 EGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMP----EKTEVSWTSM 240
Query: 353 LTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTC--MVDLLGRSGQLEKAHSLIMDYKD 410
L + G +ED + FE+M P+ + C M+ G G++ KA + D +
Sbjct: 241 LLGYTLSGRIEDAEEFFEVM-------PMKPVIACNAMIVGFGEVGEISKARR-VFDLME 292
Query: 411 FCDAGTWGALLGA 423
D TW ++ A
Sbjct: 293 DRDNATWRGMIKA 305
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 280 bits (717), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 155/437 (35%), Positives = 246/437 (56%), Gaps = 24/437 (5%)
Query: 55 ARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACA 114
A Q+FD+IP+ T F + ++ +V + +F ++ + +M F ++ N
Sbjct: 112 AHQLFDEIPEPDT-FSYNIMLSCYVRNVNFEKAQSFFDRM--------PFKDAASWNT-- 160
Query: 115 RVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRM 174
+I GY + G M+ A+ LF SM E+N +SW+AM++GY CG+++ A F+
Sbjct: 161 --------MITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVA 212
Query: 175 TEKNSVTWVAMIAGYGKCGEVREAKKVFDEIS-EPDASCWAAMTVCYVQNGYAKAAIEMY 233
+ V W AMI GY K +V A+ +F +++ + W AM YV+N + ++++
Sbjct: 213 PVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLF 272
Query: 234 KVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEG--CCDRTNYVSNALIHMHS 291
+ M +E +R + + A+ C++L +++ + + V + C D T S LI M+
Sbjct: 273 RAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTS--LISMYC 330
Query: 292 KCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIG 351
KCG L AW+ F +K KDV+++++MI+ +A HG + +AL +F +M + I P+ +TF+
Sbjct: 331 KCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVA 390
Query: 352 VLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDF 411
VL AC+H GLV G FE M R + ++P +H TCMVDLLGR+G+LE+A LI
Sbjct: 391 VLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFR 450
Query: 412 CDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVK 471
A +G LLGAC+VH N EL E AA LL+L + LANIYAS +W+D V+
Sbjct: 451 PHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVR 510
Query: 472 MMISETEKKKSPGCSWI 488
+ E+ K PG SWI
Sbjct: 511 KRMKESNVVKVPGYSWI 527
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 157/327 (48%), Gaps = 16/327 (4%)
Query: 120 LEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYA-NCGNMKAAKEFYDRMTEKN 178
L +I + G +D A R+F M +N I+W++++ G + + M A + +D + E +
Sbjct: 64 LNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPD 123
Query: 179 SVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQ 238
+ ++ M++ Y + +A+ FD + DA+ W M Y + G + A E++ M +
Sbjct: 124 TFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMME 183
Query: 239 ENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDL 298
+N EV+ IS + GD+E A+ H + R A+I + K ++L
Sbjct: 184 KN----EVSWNAMISGYIECGDLEKAS----HFFKVAPVRGVVAWTAMITGYMKAKKVEL 235
Query: 299 AWREFSRIK-NKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACS 357
A F + NK+++++++MI+ + ++ + ++ L +F M EGI PN L CS
Sbjct: 236 AEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCS 295
Query: 358 HGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSL--IMDYKDFCDAG 415
++ G + +++++ +T LT ++ + + G+L A L +M KD
Sbjct: 296 ELSALQLGRQIHQIVSKSTLCNDVTA-LTSLISMYCKCGELGDAWKLFEVMKKKDVV--- 351
Query: 416 TWGALLGACKVHVNAELGEIAARHLLE 442
W A++ H NA+ R +++
Sbjct: 352 AWNAMISGYAQHGNADKALCLFREMID 378
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 277 bits (708), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 169/501 (33%), Positives = 266/501 (53%), Gaps = 38/501 (7%)
Query: 11 KTFNQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLL---QLPGDNLSYARQVFDQIPKCKT 67
+T L Q+H+ +K+ + D A ++R L +L YA ++F+Q+P+ +
Sbjct: 34 RTIRDLSQIHAVFIKS-GQMRDTLA--AAEILRFCATSDLHHRDLDYAHKIFNQMPQ-RN 89
Query: 68 QFLWTSLIRNHVLHAHFRQSI---LLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEA-V 123
F W ++IR + I L Y M V + FTF SVL ACA+ + E
Sbjct: 90 CFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQ 149
Query: 124 ICGYT-KIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKE-FYDRMTEKNSVT 181
I G K G D S +V Y CG MK A+ FY + EK+ V
Sbjct: 150 IHGLALKYGFGGDE------------FVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVV 197
Query: 182 -------------WVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKA 228
W MI GY + G+ + A+ +FD++ + W M Y NG+ K
Sbjct: 198 MTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKD 257
Query: 229 AIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIH 288
A+E+++ M++ ++R + V +V + A ++LG +E+ L + ++ + + +ALI
Sbjct: 258 AVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALID 317
Query: 289 MHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVT 348
M+SKCG ++ A F R+ ++VI++S+MI FA HG++ +A+D F KMR G+ P+ V
Sbjct: 318 MYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 377
Query: 349 FIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDY 408
+I +LTACSHGGLVE+G + F M V G++P EH CMVDLLGRSG L++A I++
Sbjct: 378 YINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNM 437
Query: 409 KDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSE 468
D W ALLGAC++ N E+G+ A L+++ P +G L+N+YAS G W +
Sbjct: 438 PIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVS 497
Query: 469 IVKMMISETEKKKSPGCSWIS 489
+++ + E + +K PGCS I
Sbjct: 498 EMRLRMKEKDIRKDPGCSLID 518
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 166/501 (33%), Positives = 266/501 (53%), Gaps = 27/501 (5%)
Query: 6 LVPRSKTFNQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKC 65
L+ K L Q+H +K D Y + + ++ D L YAR++ P+
Sbjct: 11 LLNSCKNLRALTQIHGLFIKYGVDT-DSY-FTGKLILHCAISISDALPYARRLLLCFPE- 67
Query: 66 KTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLG-VLTSGFTFSSVLNACARVPSL----- 119
F++ +L+R + S+ ++ +M R G V F+F+ V+ A SL
Sbjct: 68 PDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQ 127
Query: 120 ---------LEA-VICGYTKIGL------MDDAQRLFDSMAERNVISWSAMVAGYANCGN 163
LE+ + G T IG+ ++ A+++FD M + N+++W+A++ +
Sbjct: 128 MHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGND 187
Query: 164 MKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQN 223
+ A+E +D+M +N +W M+AGY K GE+ AK++F E+ D W+ M V N
Sbjct: 188 VAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHN 247
Query: 224 GYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVS 283
G + ++ +++ + +EV++ G +SAC+Q G E IL V++ V+
Sbjct: 248 GSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVN 307
Query: 284 NALIHMHSKCGYLDLAWREFSRIKNKD-VISYSSMITAFADHGKSQEALDMFLKMRNEGI 342
NALI M+S+CG + +A F ++ K ++S++SMI A HG+ +EA+ +F +M G+
Sbjct: 308 NALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGV 367
Query: 343 EPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAH 402
P+ ++FI +L ACSH GL+E+G F M RV+ I+P EH CMVDL GRSG+L+KA+
Sbjct: 368 TPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAY 427
Query: 403 SLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMG 462
I A W LLGAC H N EL E + L EL P +G+ LL+N YA+ G
Sbjct: 428 DFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAG 487
Query: 463 KWKD-SEIVKMMISETEKKKS 482
KWKD + I K MI + KK +
Sbjct: 488 KWKDVASIRKSMIVQRIKKTT 508
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 275 bits (703), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 159/513 (30%), Positives = 273/513 (53%), Gaps = 63/513 (12%)
Query: 2 TSKYLVP---RSKTFNQLKQVH-SYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQ 57
Y +P R K+ N+ K+++ S ++ L++ F ++ +++ YA +
Sbjct: 9 VENYFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKI-----EDMDYATR 63
Query: 58 VFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGV-LTSGFTFSSVLNACARV 116
+F+Q+ FL+ S+IR + ++ + I +Y ++ R L FTF + +CA +
Sbjct: 64 LFNQVSNPNV-FLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASL 122
Query: 117 PSLL---------------------EAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMV 155
S A+I Y K + DA ++FD M ER+VISW++++
Sbjct: 123 GSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLL 182
Query: 156 AGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAA 215
+GYA G MK AK + M +K V+W AMI+GY G
Sbjct: 183 SGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIG---------------------- 220
Query: 216 MTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGC 275
CYV+ A++ ++ M+ + E++++ + +C QLG +E+ + + +
Sbjct: 221 ---CYVE------AMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRG 271
Query: 276 CDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFL 335
+ V NALI M+SKCG + A + F +++ KDVIS+S+MI+ +A HG + A++ F
Sbjct: 272 FLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFN 331
Query: 336 KMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRS 395
+M+ ++PN +TF+G+L+ACSH G+ ++G + F++M + + I+P EH C++D+L R+
Sbjct: 332 EMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARA 391
Query: 396 GQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLA 455
G+LE+A + D+ WG+LL +C+ N ++ +A HL+EL PE GN LLA
Sbjct: 392 GKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLA 451
Query: 456 NIYASMGKWKDSEIVKMMISETEKKKSPGCSWI 488
NIYA +GKW+D ++ MI KK+PG S I
Sbjct: 452 NIYADLGKWEDVSRLRKMIRNENMKKTPGGSLI 484
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 274 bits (700), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 163/477 (34%), Positives = 255/477 (53%), Gaps = 16/477 (3%)
Query: 15 QLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLWTSL 74
+LKQ+H+ +LKT D Y + D L YA+ VFD + T FLW +
Sbjct: 29 ELKQIHARMLKTGLM-QDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDT-FLWNLM 86
Query: 75 IRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEA--VICGYTKIGL 132
IR +S+LLY +M + +TF S+L AC+ + + E + TK+G
Sbjct: 87 IRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGY 146
Query: 133 MDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKC 192
E +V + ++++ YA GN K A +DR+ E + V+W ++I GY K
Sbjct: 147 ------------ENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKA 194
Query: 193 GEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAI 252
G++ A +F +++E +A W M YVQ K A++++ M+ +V V++ A+
Sbjct: 195 GKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANAL 254
Query: 253 SACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVI 312
SAC QLG +E + ++++ + + LI M++KCG ++ A F IK K V
Sbjct: 255 SACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQ 314
Query: 313 SYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELM 372
+++++I+ +A HG +EA+ F++M+ GI+PN +TF VLTACS+ GLVE+G F M
Sbjct: 315 AWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSM 374
Query: 373 TRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAEL 432
R + +KP EH C+VDLLGR+G L++A I + +A WGALL AC++H N EL
Sbjct: 375 ERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIEL 434
Query: 433 GEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSWIS 489
GE L+ + P G ANI+A KW + + ++ E K PGCS IS
Sbjct: 435 GEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTIS 491
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 273 bits (698), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 148/406 (36%), Positives = 223/406 (54%), Gaps = 38/406 (9%)
Query: 119 LLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKN 178
L+ +I Y K L++DA +LFD M +RNVISW+ M++ Y+ C + A E M N
Sbjct: 98 LVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDN 157
Query: 179 SVTWV------------------------------------AMIAGYGKCGEVREAKKVF 202
V A+I + K GE +A VF
Sbjct: 158 VRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVF 217
Query: 203 DEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVE 262
DE+ DA W ++ + QN + A+E++K M++ + + + ACT L +E
Sbjct: 218 DEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLE 277
Query: 263 MAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFA 322
+ + HV D+ ++NAL+ M+ KCG L+ A R F+++K +DVI++S+MI+ A
Sbjct: 278 LG--MQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLA 335
Query: 323 DHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLT 382
+G SQEAL +F +M++ G +PN +T +GVL ACSH GL+EDG F M +++GI P+
Sbjct: 336 QNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVR 395
Query: 383 EHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLE 442
EH CM+DLLG++G+L+ A L+ + + DA TW LLGAC+V N L E AA+ ++
Sbjct: 396 EHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIA 455
Query: 443 LGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSWI 488
L PE G LL+NIYA+ KW E ++ + + KK PGCSWI
Sbjct: 456 LDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWI 501
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 98/442 (22%), Positives = 182/442 (41%), Gaps = 101/442 (22%)
Query: 52 LSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLN 111
L+ A Q+FDQ+P+ + WT++I + ++++ L M R V + +T+SSVL
Sbjct: 112 LNDAHQLFDQMPQ-RNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLR 170
Query: 112 ACARVPSL-----------LE-------AVICGYTKIGLMDDAQRLFDSMAERNVISWSA 153
+C + + LE A+I + K+G +DA +FD M + I W++
Sbjct: 171 SCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNS 230
Query: 154 MVAGYANCGNMKAAKEFYDRM------TEKNSVTWV------------------------ 183
++ G+A A E + RM E+ ++T V
Sbjct: 231 IIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD 290
Query: 184 -------AMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVM 236
A++ Y KCG + +A +VF+++ E D W+ M QNGY++ A+++++ M
Sbjct: 291 QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERM 350
Query: 237 RQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDE-GCCDRTNYVSNALIHMHSKCGY 295
+ + + + +VG + AC+ G +E + + + D +I + K G
Sbjct: 351 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGK 410
Query: 296 LD---------------LAWREF---SRIKN-----------------KDVISYSSMITA 320
LD + WR R++ +D +Y+ +
Sbjct: 411 LDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNI 470
Query: 321 FADHGKSQEALDMFLKMRNEG---------IEPNQVTFIGVLTACSHGGLVEDGCKQFEL 371
+A+ K ++ +MR+ G IE N+ ++ SH +VE K +L
Sbjct: 471 YANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQL 530
Query: 372 MTRVFGIKPLTEHLTCMVDLLG 393
+ R+ GI + E + DL G
Sbjct: 531 IHRLTGIGYVPETNFVLQDLEG 552
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 114/275 (41%), Gaps = 68/275 (24%)
Query: 48 PGDNLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFS 107
P D LS VFD++ +W S+I ++ ++ L+ +M R G + T +
Sbjct: 210 PEDALS----VFDEMVT-GDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLT 264
Query: 108 SVLNACARVPSLLE--------------------AVICGYTKIGLMDDAQRLFDSMAERN 147
SVL AC + +LLE A++ Y K G ++DA R+F+ M ER+
Sbjct: 265 SVLRACTGL-ALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERD 323
Query: 148 VISWSAMVAGYANCGNMKAAKEFYDRM----TEKNSVTWVA------------------- 184
VI+WS M++G A G + A + ++RM T+ N +T V
Sbjct: 324 VITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFR 383
Query: 185 -----------------MIAGYGKCGEVREAKKVFDEIS-EPDASCWAAMT-VCYVQNGY 225
MI GK G++ +A K+ +E+ EPDA W + C VQ
Sbjct: 384 SMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNM 443
Query: 226 AKAAIEMYKVMRQENVRISEVAMVGAISACTQLGD 260
A KV+ + ++ I A +Q D
Sbjct: 444 VLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWD 478
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 80/151 (52%), Gaps = 21/151 (13%)
Query: 281 YVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNE 340
++ N LI+M+ K L+ A + F ++ ++VIS+++MI+A++ Q+AL++ + M +
Sbjct: 97 FLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRD 156
Query: 341 GIEPNQVTFIGVLTACS--------HGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLL 392
+ PN T+ VL +C+ H G++++G + ++ R + ++D+
Sbjct: 157 NVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLES-DVFVR-----------SALIDVF 204
Query: 393 GRSGQLEKAHSLIMDYKDFCDAGTWGALLGA 423
+ G+ E A S + D DA W +++G
Sbjct: 205 AKLGEPEDALS-VFDEMVTGDAIVWNSIIGG 234
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 164/550 (29%), Positives = 272/550 (49%), Gaps = 75/550 (13%)
Query: 4 KYLVPRSKTFNQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLL---QLPGDNLSYARQVFD 60
K L+ + T N LKQ+H L+ + + ++ FL+ LL L Y+ +F
Sbjct: 17 KTLISVACTVNHLKQIHVSLI-------NHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFS 69
Query: 61 --QIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPS 118
Q P FL+ SLI V + F +++ L+ + + G+ GFTF VL AC R S
Sbjct: 70 HTQFPNI---FLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126
Query: 119 L-----LEAVI--CG--------------YTKIGLMDDAQRLFDSMAERNVISWSAMVAG 157
L +++ CG Y+ G ++DA +LFD + +R+V++W+A+ +G
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSG 186
Query: 158 YANCGNMKAAKEFYDRMTE---------------------------------------KN 178
Y G + A + + +M E KN
Sbjct: 187 YTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKN 246
Query: 179 SVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQ 238
S ++ Y KCG++ +A+ VFD + E D W+ M Y N + K IE++ M Q
Sbjct: 247 SFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQ 306
Query: 239 ENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDL 298
EN++ + ++VG +S+C LG +++ +D +++NALI M++KCG +
Sbjct: 307 ENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMAR 366
Query: 299 AWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSH 358
+ F +K KD++ ++ I+ A +G + + +F + GI P+ TF+G+L C H
Sbjct: 367 GFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVH 426
Query: 359 GGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWG 418
GL++DG + F ++ V+ +K EH CMVDL GR+G L+ A+ LI D +A WG
Sbjct: 427 AGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWG 486
Query: 419 ALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETE 478
ALL C++ + +L E + L+ L P GN L+NIY+ G+W ++ V+ M+++
Sbjct: 487 ALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKG 546
Query: 479 KKKSPGCSWI 488
KK PG SWI
Sbjct: 547 MKKIPGYSWI 556
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 157/491 (31%), Positives = 264/491 (53%), Gaps = 22/491 (4%)
Query: 6 LVPRSKTFNQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKC 65
++ +S+ N LKQV S+++ + H+ L+R L NLSYAR +FD+
Sbjct: 30 VISKSRHLNHLKQVQSFMIVSGL---SHSHFLCFKLLRFCTLRLCNLSYARFIFDRFSFP 86
Query: 66 KTQFLWTSLIRNHV--LHAHFRQSILLYAKM-HRLGVLTSGFTFSSVLNACARVPSLLEA 122
T L+ +++ + L H + + M +R + F + VL + + S
Sbjct: 87 NTH-LYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFST 145
Query: 123 VICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYAN-CGNMKAAKEFYDRMTEKNSVT 181
+ LF S V+ +A++ YA+ ++ A++ +D M+E+N V+
Sbjct: 146 PLVH----------THLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVS 195
Query: 182 WVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQE-N 240
W AM++GY + G++ A +F+++ E D W A+ QNG A+ +++ M E +
Sbjct: 196 WTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPS 255
Query: 241 VRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAW 300
+R +EV +V +SAC Q G +++A + +VSN+L+ ++ KCG L+ A
Sbjct: 256 IRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEAS 315
Query: 301 REFSRIKNKDVISYSSMITAFADHGKSQEALDMF---LKMRNEGIEPNQVTFIGVLTACS 357
F K + +++SMI FA HG+S+EA+ +F +K+ I+P+ +TFIG+L AC+
Sbjct: 316 SVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLNACT 375
Query: 358 HGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTW 417
HGGLV G F+LMT FGI+P EH C++DLLGR+G+ ++A ++ K D W
Sbjct: 376 HGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTMKMKADEAIW 435
Query: 418 GALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISET 477
G+LL ACK+H + +L E+A ++L+ L P G A++AN+Y MG W+++ + MI
Sbjct: 436 GSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQ 495
Query: 478 EKKKSPGCSWI 488
K PG S I
Sbjct: 496 NAYKPPGWSRI 506
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 270 bits (691), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 163/536 (30%), Positives = 265/536 (49%), Gaps = 101/536 (18%)
Query: 52 LSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLN 111
L A +F +P+ + Q W S++ H +++ +A MH+ G + + ++F+SVL+
Sbjct: 102 LDEADSLFRSMPE-RDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLS 160
Query: 112 AC----------------ARVPSLLE-----AVICGYTKIGLMDDAQRLFDSMAERNVIS 150
AC A+ P L + A++ Y+K G ++DAQR+FD M +RNV+S
Sbjct: 161 ACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVS 220
Query: 151 WSAMVAGYANCGNMKAAKEFYDRM----TEKNSVTWVAMIAG------------------ 188
W++++ + G A + + M E + VT ++I+
Sbjct: 221 WNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVV 280
Query: 189 ------------------YGKCGEVREAKKVFD--------------------------- 203
Y KC ++EA+ +FD
Sbjct: 281 KNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAAR 340
Query: 204 ----EISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLG 259
+++E + W A+ Y QNG + A+ ++ ++++E+V + + + AC L
Sbjct: 341 LMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLA 400
Query: 260 DVEMAAILAKHV-------DEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVI 312
++ + HV G D +V N+LI M+ KCG ++ + F ++ +D +
Sbjct: 401 ELHLGMQAHVHVLKHGFKFQSGEEDDI-FVGNSLIDMYVKCGCVEEGYLVFRKMMERDCV 459
Query: 313 SYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELM 372
S+++MI FA +G EAL++F +M G +P+ +T IGVL+AC H G VE+G F M
Sbjct: 460 SWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSM 519
Query: 373 TRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAEL 432
TR FG+ PL +H TCMVDLLGR+G LE+A S+I + D+ WG+LL ACKVH N L
Sbjct: 520 TRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITL 579
Query: 433 GEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSWI 488
G+ A LLE+ P +G LL+N+YA +GKW+D V+ + + K PGCSWI
Sbjct: 580 GKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWI 635
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 137/261 (52%), Gaps = 9/261 (3%)
Query: 97 LGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVA 156
L T F+ +L++C + S L A+ Y ++ S + + ++
Sbjct: 13 LSSFTDSSPFAKLLDSC--IKSKLSAIYVRYVHASVIK-------SGFSNEIFIQNRLID 63
Query: 157 GYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAM 216
Y+ CG+++ ++ +D+M ++N TW +++ G K G + EA +F + E D W +M
Sbjct: 64 AYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSM 123
Query: 217 TVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCC 276
+ Q+ + A+ + +M +E ++E + +SAC+ L D+ + + +
Sbjct: 124 VSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPF 183
Query: 277 DRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLK 336
Y+ +AL+ M+SKCG ++ A R F + +++V+S++S+IT F +G + EALD+F
Sbjct: 184 LSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQM 243
Query: 337 MRNEGIEPNQVTFIGVLTACS 357
M +EP++VT V++AC+
Sbjct: 244 MLESRVEPDEVTLASVISACA 264
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 268 bits (686), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 164/483 (33%), Positives = 261/483 (54%), Gaps = 33/483 (6%)
Query: 14 NQLKQVHSYLLKT-LTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLWT 72
N +KQ+H++ L+T + + D L RLL +P NL YAR++FD T FL+
Sbjct: 2 NGIKQLHAHCLRTGVDETKD-------LLQRLLLIP--NLVYARKLFDHHQNSCT-FLYN 51
Query: 73 SLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACA-----RVPSLLEAVICGY 127
LI+ + +H +SI+LY + G+ S TF+ + A A R LL +
Sbjct: 52 KLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHS----- 106
Query: 128 TKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIA 187
+ F S E + + ++ YA G + A+ +D M++++ W AMI
Sbjct: 107 ----------QFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMIT 156
Query: 188 GYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQE-NVRISEV 246
GY + G+++ A ++FD + + + W + + QNG A++M+ M ++ +V+ + +
Sbjct: 157 GYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHI 216
Query: 247 AMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRI 306
+V + AC LG++E+ L + E YV NA I M+SKCG +D+A R F +
Sbjct: 217 TVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEEL 276
Query: 307 KN-KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDG 365
N +++ S++SMI + A HGK EAL +F +M EG +P+ VTF+G+L AC HGG+V G
Sbjct: 277 GNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKG 336
Query: 366 CKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACK 425
+ F+ M V I P EH CM+DLLGR G+L++A+ LI DA WG LLGAC
Sbjct: 337 QELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACS 396
Query: 426 VHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGC 485
H N E+ EIA+ L +L P GN +++NIYA+ KW ++ ++ + K+ G
Sbjct: 397 FHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGY 456
Query: 486 SWI 488
S+
Sbjct: 457 SYF 459
>sp|P0C8Q5|PP336_ARATH Pentatricopeptide repeat-containing protein At4g22760
OS=Arabidopsis thaliana GN=PCMP-E6 PE=2 SV=1
Length = 578
Score = 268 bits (685), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 150/439 (34%), Positives = 242/439 (55%), Gaps = 22/439 (5%)
Query: 52 LSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLN 111
+ A++ FD I + K W SL+ ++ ++ ++ K+ ++ SS
Sbjct: 155 IELAKKAFDDIAE-KNTVSWNSLLHGYLESGELDEARRVFDKIPEKDAVSWNLIISS--- 210
Query: 112 ACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFY 171
Y K G M +A LF +M ++ SW+ ++ GY NC MK A+ ++
Sbjct: 211 ---------------YAKKGDMGNACSLFSAMPLKSPASWNILIGGYVNCREMKLARTYF 255
Query: 172 DRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIE 231
D M +KN V+W+ MI+GY K G+V+ A+++F +S+ D + AM CY QNG K A++
Sbjct: 256 DAMPQKNGVSWITMISGYTKLGDVQSAEELFRLMSKKDKLVYDAMIACYTQNGKPKDALK 315
Query: 232 MYKVMRQEN--VRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHM 289
++ M + N ++ E+ + +SA +QLG+ + ++ E + +S +LI +
Sbjct: 316 LFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFGTWVESYITEHGIKIDDLLSTSLIDL 375
Query: 290 HSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTF 349
+ K G A++ FS + KD +SYS+MI +G + EA +F M + I PN VTF
Sbjct: 376 YMKGGDFAKAFKMFSNLNKKDTVSYSAMIMGCGINGMATEANSLFTAMIEKKIPPNVVTF 435
Query: 350 IGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK 409
G+L+A SH GLV++G K F M + ++P +H MVD+LGR+G+LE+A+ LI
Sbjct: 436 TGLLSAYSHSGLVQEGYKCFNSM-KDHNLEPSADHYGIMVDMLGRAGRLEEAYELIKSMP 494
Query: 410 DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEI 469
+AG WGALL A +H N E GEIA H ++L + TG + LA IY+S+G+W D+
Sbjct: 495 MQPNAGVWGALLLASGLHNNVEFGEIACSHCVKLETDPTGYLSHLAMIYSSVGRWDDART 554
Query: 470 VKMMISETEKKKSPGCSWI 488
V+ I E + K+ GCSW+
Sbjct: 555 VRDSIKEKKLCKTLGCSWV 573
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 263 bits (673), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 162/535 (30%), Positives = 267/535 (49%), Gaps = 66/535 (12%)
Query: 17 KQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLWTSLIR 76
+ VH+ ++KTL P + A +LI + D+ AR V P + WTSLI
Sbjct: 26 RVVHARIVKTLDSPPPPF--LANYLINMYS-KLDHPESARLVLRLTP-ARNVVSWTSLIS 81
Query: 77 NHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACA--RVPSLLE-----AVICG--- 126
+ HF +++ + +M R GV+ + FTF A A R+P + AV CG
Sbjct: 82 GLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRIL 141
Query: 127 -----------YTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMT 175
Y K L DDA++LFD + ERN+ +W+A ++ G + A E +
Sbjct: 142 DVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFR 201
Query: 176 E----KNSVTWVA-----------------------------------MIAGYGKCGEVR 196
NS+T+ A +I YGKC ++R
Sbjct: 202 RIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIR 261
Query: 197 EAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACT 256
++ +F E+ +A W ++ YVQN + A +Y R++ V S+ + +SAC
Sbjct: 262 SSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACA 321
Query: 257 QLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSS 316
+ +E+ + H + C +RT +V +AL+ M+ KCG ++ + + F + K++++ +S
Sbjct: 322 GMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNS 381
Query: 317 MITAFADHGKSQEALDMFLKM--RNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTR 374
+I +A G+ AL +F +M R G PN +TF+ +L+ACS G VE+G K F+ M
Sbjct: 382 LIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRS 441
Query: 375 VFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGE 434
+GI+P EH +C+VD+LGR+G +E+A+ I WGAL AC++H +LG
Sbjct: 442 TYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGL 501
Query: 435 IAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSWIS 489
+AA +L +L P+ +GN LL+N +A+ G+W ++ V+ + KK G SWI+
Sbjct: 502 LAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWIT 556
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 261 bits (667), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 162/496 (32%), Positives = 256/496 (51%), Gaps = 34/496 (6%)
Query: 6 LVPRSKTFNQLKQVHSYLLKTLTKPHDQYHYYAQFLI--RLLQL---------PGDNLSY 54
L+ +F+ LK +H +LL+T H + + RLL L P + L Y
Sbjct: 18 LLQSCSSFSDLKIIHGFLLRT--------HLISDVFVASRLLALCVDDSTFNKPTNLLGY 69
Query: 55 ARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACA 114
A +F QI F++ LIR A ++ Y +M + + TF ++ A +
Sbjct: 70 AYGIFSQIQN-PNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASS 128
Query: 115 RVPSLL--EAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYD 172
+ +L E + G +D V +++V YANCG + AA +
Sbjct: 129 EMECVLVGEQTHSQIVRFGFQND------------VYVENSLVHMYANCGFIAAAGRIFG 176
Query: 173 RMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEM 232
+M ++ V+W +M+AGY KCG V A+++FDE+ + W+ M Y +N + AI++
Sbjct: 177 QMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDL 236
Query: 233 YKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSK 292
++ M++E V +E MV IS+C LG +E ++V + + AL+ M +
Sbjct: 237 FEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWR 296
Query: 293 CGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGV 352
CG ++ A F + D +S+SS+I A HG + +A+ F +M + G P VTF V
Sbjct: 297 CGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAV 356
Query: 353 LTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFC 412
L+ACSHGGLVE G + +E M + GI+P EH C+VD+LGR+G+L +A + I+
Sbjct: 357 LSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKP 416
Query: 413 DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKM 472
+A GALLGACK++ N E+ E L+++ PE +G LL+NIYA G+W E ++
Sbjct: 417 NAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRD 476
Query: 473 MISETEKKKSPGCSWI 488
M+ E KK PG S I
Sbjct: 477 MMKEKLVKKPPGWSLI 492
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 151/439 (34%), Positives = 234/439 (53%), Gaps = 19/439 (4%)
Query: 52 LSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLN 111
L +RQ+FD++PK + + S+I +V + G++ S ++
Sbjct: 172 LGLSRQMFDRMPK-RDSVSYNSMIDGYV----------------KCGLIVSARELFDLMP 214
Query: 112 ACARVPSLLEAVICGYTKIGL-MDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEF 170
+ ++I GY + +D A +LF M E+++ISW++M+ GY G ++ AK
Sbjct: 215 MEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGL 274
Query: 171 YDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAI 230
+D M ++ VTW MI GY K G V AK +FD++ D + +M YVQN Y A+
Sbjct: 275 FDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEAL 334
Query: 231 EMYKVMRQE-NVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHM 289
E++ M +E ++ + +V + A QLG + A + ++ E + ALI M
Sbjct: 335 EIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDM 394
Query: 290 HSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTF 349
+SKCG + A F I+NK + +++MI A HG + A DM L++ ++P+ +TF
Sbjct: 395 YSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITF 454
Query: 350 IGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK 409
+GVL ACSH GLV++G FELM R I+P +H CMVD+L RSG +E A +LI +
Sbjct: 455 VGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMP 514
Query: 410 DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEI 469
+ W L AC H E GE+ A+HL+ + LL+N+YAS G WKD
Sbjct: 515 VEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGMWKDVRR 574
Query: 470 VKMMISETEKKKSPGCSWI 488
V+ M+ E + +K PGCSWI
Sbjct: 575 VRTMMKERKIEKIPGCSWI 593
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 259 bits (661), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 168/577 (29%), Positives = 280/577 (48%), Gaps = 97/577 (16%)
Query: 6 LVPRSKTFNQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPG-DNLSYARQVFDQIPK 64
L+ KT L+ +H+ ++K H+ + ++ + + P + L YA VF I +
Sbjct: 39 LLHNCKTLQSLRIIHAQMIKI--GLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQE 96
Query: 65 CKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLE--- 121
+W ++ R H L + ++ LY M LG+L + +TF VL +CA+ + E
Sbjct: 97 -PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQ 155
Query: 122 -------------------------------------------------AVICGYTKIGL 132
A+I GY G
Sbjct: 156 IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGY 215
Query: 133 MDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNS-------VT---- 181
+++AQ+LFD + ++V+SW+AM++GYA GN K A E + M + N VT
Sbjct: 216 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSA 275
Query: 182 ---------------WV-------------AMIAGYGKCGEVREAKKVFDEISEPDASCW 213
W+ A+I Y KCGE+ A +F+ + D W
Sbjct: 276 CAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISW 335
Query: 214 AAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDE 273
+ Y K A+ +++ M + ++V M+ + AC LG +++ + ++D+
Sbjct: 336 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDK 395
Query: 274 GCCDRTNYVS--NALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEAL 331
TN S +LI M++KCG ++ A + F+ I +K + S+++MI FA HG++ +
Sbjct: 396 RLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASF 455
Query: 332 DMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDL 391
D+F +MR GI+P+ +TF+G+L+ACSH G+++ G F MT+ + + P EH CM+DL
Sbjct: 456 DLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDL 515
Query: 392 LGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNS 451
LG SG ++A +I + D W +LL ACK+H N ELGE A +L+++ PE G+
Sbjct: 516 LGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSY 575
Query: 452 ALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSWI 488
LL+NIYAS G+W + + ++++ KK PGCS I
Sbjct: 576 VLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSI 612
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 258 bits (658), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 242/442 (54%), Gaps = 19/442 (4%)
Query: 51 NLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVL 110
++ AR+VFD+ P + W LI + ++I +Y M GV T ++
Sbjct: 206 DMENARKVFDESP-VRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLV 264
Query: 111 NACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE---RNVISW-SAMVAGYANCGNMKA 166
++C + +G ++ + ++ + E R I +A++ ++ CG++
Sbjct: 265 SSC--------------SMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHE 310
Query: 167 AKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYA 226
A+ +D + ++ V+W MI+GY +CG + ++K+FD++ E D W AM VQ
Sbjct: 311 ARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRG 370
Query: 227 KAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNAL 286
+ A+ +++ M+ N + E+ M+ +SAC+QLG +++ + +++++ + +L
Sbjct: 371 QDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSL 430
Query: 287 IHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQ 346
+ M++KCG + A F I+ ++ ++Y+++I A HG + A+ F +M + GI P++
Sbjct: 431 VDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDE 490
Query: 347 VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIM 406
+TFIG+L+AC HGG+++ G F M F + P +H + MVDLLGR+G LE+A L+
Sbjct: 491 ITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLME 550
Query: 407 DYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKD 466
DA WGALL C++H N ELGE AA+ LLEL P +G LL +Y W+D
Sbjct: 551 SMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWED 610
Query: 467 SEIVKMMISETEKKKSPGCSWI 488
++ + M++E +K PGCS I
Sbjct: 611 AKRARRMMNERGVEKIPGCSSI 632
Score = 115 bits (287), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 100/415 (24%), Positives = 181/415 (43%), Gaps = 82/415 (19%)
Query: 52 LSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSG---FTFSS 108
L Y+ ++ I F W IR + ++S LLY +M R G S FT+
Sbjct: 103 LDYSVKILKGIENPNI-FSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPV 161
Query: 109 VLNACA--RVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKA 166
+ CA R+ SL ++ K+ L E +A + +A+CG+M+
Sbjct: 162 LFKVCADLRLSSLGHMILGHVLKLRL------------ELVSHVHNASIHMFASCGDMEN 209
Query: 167 AKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYA 226
A++ +D ++ V+W +I GY K GE A
Sbjct: 210 ARKVFDESPVRDLVSWNCLINGYKKIGE-------------------------------A 238
Query: 227 KAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNAL 286
+ AI +YK+M E V+ +V M+G +S+C+ LGD+ ++V E T + NAL
Sbjct: 239 EKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNAL 298
Query: 287 IHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHG--------------------- 325
+ M SKCG + A R F ++ + ++S+++MI+ +A G
Sbjct: 299 MDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWN 358
Query: 326 ----------KSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRV 375
+ Q+AL +F +M+ +P+++T I L+ACS G ++ G + +
Sbjct: 359 AMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEK- 417
Query: 376 FGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNA 430
+ + T +VD+ + G + +A S+ + ++ T+ A++G +H +A
Sbjct: 418 YSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTR-NSLTYTAIIGGLALHGDA 471
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 256 bits (654), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 169/547 (30%), Positives = 261/547 (47%), Gaps = 82/547 (14%)
Query: 13 FNQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQ---LPGDNLSYARQVFDQIPKCKTQF 69
F LKQ+H LL T P Y FL RLL+ YAR++ Q+ Q
Sbjct: 14 FLHLKQIHCLLL---TSP-IFYTRRDLFLSRLLRRCCTAATQFRYARRLLCQLQTLSIQ- 68
Query: 70 LWTSLIRNHVLHAHF--------RQSILLYAKMHRLGVLTSGFTFSSVLNACARV----- 116
LW SLI HF R S L Y M R GV+ S TF +L A ++
Sbjct: 69 LWDSLI------GHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSNP 122
Query: 117 ---------------PSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANC 161
P + ++I GY+ GL D A RLFD +++V++W+AM+ G+
Sbjct: 123 FQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRN 182
Query: 162 GNMKAAKEFYDRMTEK----NSVTWVAMIAG----------------------------- 188
G+ A ++ M + N +T V+++
Sbjct: 183 GSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFI 242
Query: 189 -------YGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENV 241
YGKC +A+KVFDE+ + W A+ YVQ+ + +++ M + +V
Sbjct: 243 GSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDV 302
Query: 242 RISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWR 301
+E + +SAC +G + + ++ + + LI ++ KCG L+ A
Sbjct: 303 APNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAIL 362
Query: 302 EFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGL 361
F R+ K+V ++++MI FA HG +++A D+F M + + PN+VTF+ VL+AC+HGGL
Sbjct: 363 VFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGL 422
Query: 362 VEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALL 421
VE+G + F M F ++P +H CMVDL GR G LE+A +LI WGAL
Sbjct: 423 VEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALF 482
Query: 422 GACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKK 481
G+C +H + ELG+ AA +++L P +G LLAN+Y+ W + V+ + + + K
Sbjct: 483 GSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVK 542
Query: 482 SPGCSWI 488
SPG SWI
Sbjct: 543 SPGFSWI 549
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 164/486 (33%), Positives = 255/486 (52%), Gaps = 36/486 (7%)
Query: 16 LKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLWTSLI 75
LKQ H Y++ +T + A+F I G +L YA VF P C +L ++I
Sbjct: 31 LKQSHCYMI--ITGLNRDNLNVAKF-IEACSNAG-HLRYAYSVFTHQP-CPNTYLHNTMI 85
Query: 76 RNHVL----HAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLL-------EAVI 124
R L +AH +I +Y K+ L FTF VL RV + + V+
Sbjct: 86 RALSLLDEPNAH-SIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVV 144
Query: 125 CGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVA 184
G FDS +V + ++ Y +CG + A++ +D M K+ W A
Sbjct: 145 FG-------------FDS----SVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNA 187
Query: 185 MIAGYGKCGEVREAKKVFDEIS--EPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVR 242
++AGYGK GE+ EA+ + + + + W + Y ++G A AIE+++ M ENV
Sbjct: 188 LLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVE 247
Query: 243 ISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWRE 302
EV ++ +SAC LG +E+ + +VD +R ++NA+I M++K G + A
Sbjct: 248 PDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDV 307
Query: 303 FSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLV 362
F + ++V++++++I A HG EAL MF +M G+ PN VTFI +L+ACSH G V
Sbjct: 308 FECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWV 367
Query: 363 EDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLG 422
+ G + F M +GI P EH CM+DLLGR+G+L +A +I +A WG+LL
Sbjct: 368 DLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLA 427
Query: 423 ACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKS 482
A VH + ELGE A L++L P +GN LLAN+Y+++G+W +S +++ M+ KK
Sbjct: 428 ASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKM 487
Query: 483 PGCSWI 488
G S I
Sbjct: 488 AGESSI 493
>sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2
SV=1
Length = 627
Score = 252 bits (643), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 138/440 (31%), Positives = 242/440 (55%), Gaps = 22/440 (5%)
Query: 52 LSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLN 111
+ A ++FD++P+ + W S+++ V +++ L+ +M R V++
Sbjct: 156 IDKALELFDEMPE-RNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVS---------- 204
Query: 112 ACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFY 171
A++ G K G +D+A+RLFD M ERN+ISW+AM+ GYA + A + +
Sbjct: 205 --------WTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLF 256
Query: 172 DRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIE 231
M E++ +W MI G+ + E+ +A +FD + E + W M YV+N + A+
Sbjct: 257 QVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALN 316
Query: 232 MY-KVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMH 290
++ K++R +V+ + V +SAC+ L + + + + + + V++AL++M+
Sbjct: 317 VFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMY 376
Query: 291 SKCGYLDLAWREFSR--IKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVT 348
SK G L A + F + +D+IS++SMI +A HG +EA++M+ +MR G +P+ VT
Sbjct: 377 SKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVT 436
Query: 349 FIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDY 408
++ +L ACSH GLVE G + F+ + R + EH TC+VDL GR+G+L+ + I
Sbjct: 437 YLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKDVTNFINCD 496
Query: 409 KDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSE 468
+GA+L AC VH + + + +LE G + G L++NIYA+ GK +++
Sbjct: 497 DARLSRSFYGAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAA 556
Query: 469 IVKMMISETEKKKSPGCSWI 488
++M + E KK PGCSW+
Sbjct: 557 EMRMKMKEKGLKKQPGCSWV 576
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 107/377 (28%), Positives = 190/377 (50%), Gaps = 73/377 (19%)
Query: 115 RVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRM 174
RVP E +I K+G + +A++LFD + ER+V++W+ ++ GY G+M+ A+E +DR+
Sbjct: 45 RVPQP-EWLIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRV 103
Query: 175 -TEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMY 233
+ KN VTW AM++GY + ++ A+ +F E+ E + W M Y Q+G A+E++
Sbjct: 104 DSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELF 163
Query: 234 KVMRQENVRISEVAMVGAISACTQLGDVE-------------------MAAILAKH--VD 272
M + N+ V+ + A Q G ++ M LAK+ VD
Sbjct: 164 DEMPERNI----VSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVD 219
Query: 273 EG-----CCDRTNYVS-NALIHMHSKCGYLDLA--------------W----------RE 302
E C N +S NA+I +++ +D A W RE
Sbjct: 220 EARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNRE 279
Query: 303 -------FSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEG-IEPNQVTFIGVLT 354
F R+ K+VIS+++MIT + ++ +++EAL++F KM +G ++PN T++ +L+
Sbjct: 280 MNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILS 339
Query: 355 ACSH-GGLVEDGCKQFELMTRVFGIKPLTEHLT-CMVDLLGRSGQLEKAHSLIMDYKDFC 412
ACS GLVE G + +L+++ + E +T ++++ +SG+L A + D C
Sbjct: 340 ACSDLAGLVE-GQQIHQLISK--SVHQKNEIVTSALLNMYSKSGELIAARKMF-DNGLVC 395
Query: 413 --DAGTWGALLGACKVH 427
D +W +++ H
Sbjct: 396 QRDLISWNSMIAVYAHH 412
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 251 bits (642), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 156/485 (32%), Positives = 264/485 (54%), Gaps = 18/485 (3%)
Query: 6 LVPRSKTFNQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKC 65
L+ +S++ +++ Q+H+ +L+ H +Y L R G + ++ +F Q
Sbjct: 35 LIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHG-KIRHSLALFHQTIDP 93
Query: 66 KTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVIC 125
FL+T+ I ++ Q+ LLY ++ + + FTFSS+L +C+
Sbjct: 94 DL-FLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS----------- 141
Query: 126 GYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAM 185
TK G + L + ++ + +V YA G++ +A++ +DRM E++ V+ AM
Sbjct: 142 --TKSGKLIHTHVLKFGLGIDPYVA-TGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAM 198
Query: 186 IAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMY-KVMRQENVRIS 244
I Y K G V A+ +FD + E D W M Y Q+G+ A+ ++ K++ + +
Sbjct: 199 ITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPD 258
Query: 245 EVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFS 304
E+ +V A+SAC+Q+G +E + V V LI M+SKCG L+ A F+
Sbjct: 259 EITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFN 318
Query: 305 RIKNKDVISYSSMITAFADHGKSQEALDMFLKMRN-EGIEPNQVTFIGVLTACSHGGLVE 363
KD++++++MI +A HG SQ+AL +F +M+ G++P +TFIG L AC+H GLV
Sbjct: 319 DTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVN 378
Query: 364 DGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGA 423
+G + FE M + +GIKP EH C+V LLGR+GQL++A+ I + D+ W ++LG+
Sbjct: 379 EGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGS 438
Query: 424 CKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSP 483
CK+H + LG+ A +L+ L + +G LL+NIYAS+G ++ V+ ++ E K P
Sbjct: 439 CKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEP 498
Query: 484 GCSWI 488
G S I
Sbjct: 499 GISTI 503
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 162/534 (30%), Positives = 262/534 (49%), Gaps = 73/534 (13%)
Query: 18 QVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLWTSLIRN 77
QVH+ ++K D+ + LI L L N+ AR +FD+ + K+ W S+I
Sbjct: 215 QVHTVVVKN---GLDKTIPVSNSLINLY-LKCGNVRKARILFDKT-EVKSVVTWNSMISG 269
Query: 78 HVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLL----------------- 120
+ + +++ ++ M V S +F+SV+ CA + L
Sbjct: 270 YAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFD 329
Query: 121 ----EAVICGYTKIGLMDDAQRLFDSMA-ERNVISWSAMVAGYANCGNMKAAKEFYDRMT 175
A++ Y+K M DA RLF + NV+SW+AM++G+ + A + + M
Sbjct: 330 QNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMK 389
Query: 176 -----------------------------------EKNSVTWVAMIAGYGKCGEVREAKK 200
E++S A++ Y K G+V EA K
Sbjct: 390 RKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAK 449
Query: 201 VFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQL-- 258
VF I + D W+AM Y Q G +AAI+M+ + + ++ +E ++ C
Sbjct: 450 VFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNA 509
Query: 259 ----GDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISY 314
G + +D C VS+AL+ M++K G ++ A F R + KD++S+
Sbjct: 510 SMGQGKQFHGFAIKSRLDSSLC-----VSSALLTMYAKKGNIESAEEVFKRQREKDLVSW 564
Query: 315 SSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTR 374
+SMI+ +A HG++ +ALD+F +M+ ++ + VTFIGV AC+H GLVE+G K F++M R
Sbjct: 565 NSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVR 624
Query: 375 VFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGE 434
I P EH +CMVDL R+GQLEKA +I + + + W +L AC+VH ELG
Sbjct: 625 DCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGR 684
Query: 435 IAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSWI 488
+AA ++ + PE + LL+N+YA G W++ V+ +++E KK PG SWI
Sbjct: 685 LAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWI 738
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 105/449 (23%), Positives = 201/449 (44%), Gaps = 75/449 (16%)
Query: 47 LPGDNLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTF 106
+ G N R+VFD++ K + WT+LI + ++ + + L+ +M G + FTF
Sbjct: 139 MKGSNFKDGRKVFDEM-KERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTF 197
Query: 107 SSVL---------------------NACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE 145
++ L N + + ++I Y K G + A+ LFD
Sbjct: 198 AAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEV 257
Query: 146 RNVISWSAMVAGYANCG-NMKAAKEFYD--------------------------RMTEKN 178
++V++W++M++GYA G +++A FY R TE+
Sbjct: 258 KSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQL 317
Query: 179 SVTWV------------AMIAGYGKCGEVREAKKVFDEIS-EPDASCWAAMTVCYVQNGY 225
+ V A++ Y KC + +A ++F EI + W AM ++QN
Sbjct: 318 HCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDG 377
Query: 226 AKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNA 285
+ A++++ M+++ VR +E ++A + E+ A + K E R++ V A
Sbjct: 378 KEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYE----RSSTVGTA 433
Query: 286 LIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPN 345
L+ + K G ++ A + FS I +KD++++S+M+ +A G+++ A+ MF ++ GI+PN
Sbjct: 434 LLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPN 493
Query: 346 QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTC----MVDLLGRSGQLEKA 401
+ TF +L C+ KQF F IK + C ++ + + G +E A
Sbjct: 494 EFTFSSILNVCAATNASMGQGKQFH----GFAIKSRLDSSLCVSSALLTMYAKKGNIESA 549
Query: 402 HSLIMDYKDFCDAGTWGALLGACKVHVNA 430
+ ++ D +W +++ H A
Sbjct: 550 EEVFKRQRE-KDLVSWNSMISGYAQHGQA 577
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/365 (26%), Positives = 157/365 (43%), Gaps = 62/365 (16%)
Query: 52 LSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLN 111
L A +FD+ P + + + SL+ +++ L+ +HRLG+ FSSVL
Sbjct: 43 LYNAHNLFDKSPG-RDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLK 101
Query: 112 ACARVPSLL--EAVICGYTKIGLMDD-------------------AQRLFDSMAERNVIS 150
A + L + C K G +DD +++FD M ERNV++
Sbjct: 102 VSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVT 161
Query: 151 WSAMVAGYANCGNMKAAKEFYDRM----TEKNSVTWVA---------------------- 184
W+ +++GYA + RM T+ NS T+ A
Sbjct: 162 WTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVV 221
Query: 185 -------------MIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIE 231
+I Y KCG VR+A+ +FD+ W +M Y NG A+
Sbjct: 222 KNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALG 281
Query: 232 MYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHS 291
M+ MR VR+SE + I C L ++ L V + + AL+ +S
Sbjct: 282 MFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYS 341
Query: 292 KCGYLDLAWREFSRIK-NKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFI 350
KC + A R F I +V+S+++MI+ F + +EA+D+F +M+ +G+ PN+ T+
Sbjct: 342 KCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYS 401
Query: 351 GVLTA 355
+LTA
Sbjct: 402 VILTA 406
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/267 (17%), Positives = 117/267 (43%), Gaps = 37/267 (13%)
Query: 157 GYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAM 216
G + + A +D+ ++ ++++++ G+ + G +EAK++F
Sbjct: 36 GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLF-------------- 81
Query: 217 TVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCC 276
+ ++++ + + I + + + C +L ++ K G
Sbjct: 82 -------------LNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKF---GFL 125
Query: 277 DRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLK 336
D + V +L+ + K + F +K ++V++++++I+ +A + + E L +F++
Sbjct: 126 DDVS-VGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMR 184
Query: 337 MRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVF--GIKPLTEHLTCMVDLLGR 394
M+NEG +PN TF L + G+ G + ++ T V G+ +++L +
Sbjct: 185 MQNEGTQPNSFTFAAALGVLAEEGV---GGRGLQVHTVVVKNGLDKTIPVSNSLINLYLK 241
Query: 395 SGQLEKAHSLIMDYKDFCDAGTWGALL 421
G + KA ++ D + TW +++
Sbjct: 242 CGNVRKAR-ILFDKTEVKSVVTWNSMI 267
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 248 bits (634), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 143/479 (29%), Positives = 247/479 (51%), Gaps = 24/479 (5%)
Query: 9 RSKTFNQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQ 68
R+K+ +++Q H+++LKT HD + +SYA + ++I
Sbjct: 48 RAKSLTEIQQAHAFMLKT-GLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRI-GSPNG 105
Query: 69 FLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEA------ 122
F S+IR + + ++ ++ +M V ++F+ VL ACA E
Sbjct: 106 FTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGL 165
Query: 123 ---------------VICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAA 167
++ Y + G + A+++ D M R+ +SW+++++ Y G + A
Sbjct: 166 FIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEA 225
Query: 168 KEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAK 227
+ +D M E+N +W MI+GY G V+EAK+VFD + D W AM Y G
Sbjct: 226 RALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYN 285
Query: 228 AAIEMYKVMRQENVRISE-VAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNAL 286
+E++ M ++ + +V +SAC LG + + ++D+ + +++ AL
Sbjct: 286 EVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATAL 345
Query: 287 IHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQ 346
+ M+SKCG +D A F +DV +++S+I+ + HG ++AL++F +M EG +PN
Sbjct: 346 VDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNG 405
Query: 347 VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIM 406
+TFIGVL+AC+H G+++ K FE+M+ V+ ++P EH CMVDLLGR G++E+A L+
Sbjct: 406 ITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVN 465
Query: 407 DYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWK 465
+ + +LLGACK E E A LLEL + A ++N+YAS G+W+
Sbjct: 466 EIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWE 524
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 248 bits (634), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 165/547 (30%), Positives = 274/547 (50%), Gaps = 74/547 (13%)
Query: 10 SKTFNQLK------QVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIP 63
SK+F+ L+ Q+H ++LK+ + + L+ L + AR+VFD++
Sbjct: 202 SKSFSSLRSVHGGEQLHGFILKS---GFGERNSVGNSLVAFY-LKNQRVDSARKVFDEMT 257
Query: 64 KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACA--RVPSLLE 121
+ + W S+I +V + + + ++ +M G+ T SV CA R+ SL
Sbjct: 258 E-RDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGR 316
Query: 122 AV--------------ICG-----YTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCG 162
AV C Y+K G +D A+ +F M++R+V+S+++M+AGYA G
Sbjct: 317 AVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREG 376
Query: 163 NMKAAKEFYDRMTEKN------SVT--------------------WV------------- 183
A + ++ M E+ +VT W+
Sbjct: 377 LAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN 436
Query: 184 AMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRI 243
A++ Y KCG ++EA+ VF E+ D W + Y +N YA A+ ++ ++ +E R
Sbjct: 437 ALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEK-RF 495
Query: 244 S--EVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWR 301
S E + + AC L + + ++ +V+N+L+ M++KCG L LA
Sbjct: 496 SPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHM 555
Query: 302 EFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGL 361
F I +KD++S++ MI + HG +EA+ +F +MR GIE ++++F+ +L ACSH GL
Sbjct: 556 LFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGL 615
Query: 362 VEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALL 421
V++G + F +M I+P EH C+VD+L R+G L KA+ I + DA WGALL
Sbjct: 616 VDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALL 675
Query: 422 GACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKK 481
C++H + +L E A + EL PE TG L+ANIYA KW+ + ++ I + +K
Sbjct: 676 CGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRK 735
Query: 482 SPGCSWI 488
+PGCSWI
Sbjct: 736 NPGCSWI 742
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 105/440 (23%), Positives = 192/440 (43%), Gaps = 68/440 (15%)
Query: 51 NLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVL 110
+L A +VFD++ K + W L+ F SI L+ KM GV +TFS V
Sbjct: 144 DLKEASRVFDEV-KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVS 202
Query: 111 NACARVPSLL---------------------EAVICGYTKIGLMDDAQRLFDSMAERNVI 149
+ + + S+ +++ Y K +D A+++FD M ER+VI
Sbjct: 203 KSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVI 262
Query: 150 SWSAMVAGYANCGNMKAAKEFYDRM----TEKNSVTWVAMIAG----------------- 188
SW++++ GY + G + + +M E + T V++ AG
Sbjct: 263 SWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIG 322
Query: 189 ------------------YGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAI 230
Y KCG++ AK VF E+S+ + +M Y + G A A+
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAV 382
Query: 231 EMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMH 290
++++ M +E + + ++ C + ++ + + + E +VSNAL+ M+
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMY 442
Query: 291 SKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMF-LKMRNEGIEPNQVTF 349
+KCG + A FS ++ KD+IS++++I ++ + + EAL +F L + + P++ T
Sbjct: 443 AKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTV 502
Query: 350 IGVLTACSHGGLVEDGCKQFELMTR--VFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMD 407
VL AC+ + G + + R F + + L VD+ + G L AH L D
Sbjct: 503 ACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSL---VDMYAKCGALLLAHMLFDD 559
Query: 408 YKDFCDAGTWGALLGACKVH 427
D +W ++ +H
Sbjct: 560 IASK-DLVSWTVMIAGYGMH 578
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 101/226 (44%), Gaps = 9/226 (3%)
Query: 189 YGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAM 248
Y CG+++EA +VFDE+ A W + ++G +I ++K M V +
Sbjct: 139 YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198
Query: 249 VGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN 308
+ + L V L + + N V N+L+ + K +D A + F +
Sbjct: 199 SCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTE 258
Query: 309 KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQ 368
+DVIS++S+I + +G +++ L +F++M GIE + T + V C+ L+ G
Sbjct: 259 RDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG--- 315
Query: 369 FELMTRVFGIKPL--TEHLTC--MVDLLGRSGQLEKAHSLIMDYKD 410
G+K E C ++D+ + G L+ A ++ + D
Sbjct: 316 --RAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSD 359
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 248 bits (632), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 155/497 (31%), Positives = 252/497 (50%), Gaps = 65/497 (13%)
Query: 55 ARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACA 114
A ++F+ +P K WT+L+ + +A ++++ L+ M + G+ + SS+L +CA
Sbjct: 303 AHKLFNGMPN-KNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCA 361
Query: 115 RVPSL---------------------LEAVICGYTKIGLMDDAQRLFDSMAERNVISWSA 153
+ +L ++I Y K + DA+++FD A +V+ ++A
Sbjct: 362 SLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNA 421
Query: 154 MVAGYANCGNM----KAAKEFYD---RMTEKNSVTWV----------------------- 183
M+ GY+ G +A F D R+ + +T+V
Sbjct: 422 MIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMF 481
Query: 184 ------------AMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIE 231
A+I Y C +++++ VFDE+ D W +M YVQ + A+
Sbjct: 482 KYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALN 541
Query: 232 MYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHS 291
++ ++ R E ++A L V++ + + + Y++NAL+ M++
Sbjct: 542 LFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYA 601
Query: 292 KCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIG 351
KCG + A + F ++DV+ ++S+I+++A+HG+ ++AL M KM +EGIEPN +TF+G
Sbjct: 602 KCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVG 661
Query: 352 VLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDF 411
VL+ACSH GLVEDG KQFELM R FGI+P TEH CMV LLGR+G+L KA LI
Sbjct: 662 VLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTK 720
Query: 412 CDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVK 471
A W +LL C N EL E AA + P+ +G+ +L+NIYAS G W +++ V+
Sbjct: 721 PAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVR 780
Query: 472 MMISETEKKKSPGCSWI 488
+ K PG SWI
Sbjct: 781 ERMKVEGVVKEPGRSWI 797
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/348 (25%), Positives = 155/348 (44%), Gaps = 59/348 (16%)
Query: 18 QVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLWTSLIRN 77
Q+ S+L+K+ D+ Y LI L N+ YAR VFD +P+ K+ WT++I
Sbjct: 169 QLQSFLVKS---GFDRDVYVGTLLIDFY-LKDGNIDYARLVFDALPE-KSTVTWTTMISG 223
Query: 78 HVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSL-----LEAVICGYTKIGL 132
V S+ L+ ++ V+ G+ S+VL+AC+ +P L + A I Y GL
Sbjct: 224 CVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRY---GL 280
Query: 133 MDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKC 192
DA + + ++ Y CG + AA + ++ M KN ++W +++GY
Sbjct: 281 EMDASLM------------NVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYK-- 326
Query: 193 GEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAI 252
QN K A+E++ M + ++ A +
Sbjct: 327 -----------------------------QNALHKEAMELFTSMSKFGLKPDMYACSSIL 357
Query: 253 SACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVI 312
++C L + + + + +YV+N+LI M++KC L A + F DV+
Sbjct: 358 TSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVV 417
Query: 313 SYSSMITAFADHGKS---QEALDMFLKMRNEGIEPNQVTFIGVLTACS 357
+++MI ++ G EAL++F MR I P+ +TF+ +L A +
Sbjct: 418 LFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASA 465
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 125/275 (45%), Gaps = 46/275 (16%)
Query: 127 YTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCG----NMKAAKEFYDRMTEKNSVT- 181
Y++ G M A+++F+ M ERN++SWS MV+ + G ++ EF+ T K+S
Sbjct: 89 YSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWR--TRKDSPNE 146
Query: 182 ------------------WVA---------------------MIAGYGKCGEVREAKKVF 202
W+ +I Y K G + A+ VF
Sbjct: 147 YILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVF 206
Query: 203 DEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVE 262
D + E W M V+ G + +++++ + ++NV + +SAC+ L +E
Sbjct: 207 DALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLE 266
Query: 263 MAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFA 322
+ H+ + + N LI + KCG + A + F+ + NK++IS++++++ +
Sbjct: 267 GGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYK 326
Query: 323 DHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACS 357
+ +EA+++F M G++P+ +LT+C+
Sbjct: 327 QNALHKEAMELFTSMSKFGLKPDMYACSSILTSCA 361
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 39/258 (15%)
Query: 52 LSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLN 111
L +R VFD++ K K +W S+ +V + +++ L+ ++ FTF++++
Sbjct: 505 LKDSRLVFDEM-KVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVT 563
Query: 112 ACARV---------------------PSLLEAVICGYTKIGLMDDAQRLFDSMAERNVIS 150
A + P + A++ Y K G +DA + FDS A R+V+
Sbjct: 564 AAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVC 623
Query: 151 WSAMVAGYANCGNMKAAKEFYDRM----TEKNSVTWVAMIAGYGKCGEVREAKKVFDEI- 205
W+++++ YAN G K A + ++M E N +T+V +++ G V + K F+ +
Sbjct: 624 WNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELML 683
Query: 206 ---SEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVE 262
EP+ + M + G A E+ + M + I ++ +S C + G+VE
Sbjct: 684 RFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSL---LSGCAKAGNVE 740
Query: 263 MA------AILAKHVDEG 274
+A AIL+ D G
Sbjct: 741 LAEHAAEMAILSDPKDSG 758
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 109/246 (44%), Gaps = 9/246 (3%)
Query: 185 MIAGYGKCGEVREAKKVFDEISEPDASCWAAM-TVCYVQNGYAKAAIEMYKVMRQENVRI 243
+I Y + G + A+KVF+++ E + W+ M + C Y ++ + + R
Sbjct: 85 LINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSP 144
Query: 244 SEVAMVGAISACTQLGDVE--MAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWR 301
+E + I AC+ L M L + + DR YV LI + K G +D A
Sbjct: 145 NEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARL 204
Query: 302 EFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGL 361
F + K +++++MI+ G+S +L +F ++ + + P+ VL+ACS
Sbjct: 205 VFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPF 264
Query: 362 VEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLI--MDYKDFCDAGTWGA 419
+E G KQ +G++ + ++D + G++ AH L M K+ +W
Sbjct: 265 LEGG-KQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNII---SWTT 320
Query: 420 LLGACK 425
LL K
Sbjct: 321 LLSGYK 326
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 11/150 (7%)
Query: 281 YVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKM-RN 339
Y+SN LI+++S+ G + A + F ++ ++++S+S+M++A HG +E+L +FL+ R
Sbjct: 80 YLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRT 139
Query: 340 EGIEPNQVTFIGVLTACSHGGLVEDGCKQ---FELMTRVF--GIKPLTEHLTCMVDLLGR 394
PN+ + ACS GL DG + F+L + + G T ++D +
Sbjct: 140 RKDSPNEYILSSFIQACS--GL--DGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLK 195
Query: 395 SGQLEKAHSLIMDYKDFCDAGTWGALLGAC 424
G ++ A L+ D TW ++ C
Sbjct: 196 DGNIDYAR-LVFDALPEKSTVTWTTMISGC 224
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 138/467 (29%), Positives = 248/467 (53%), Gaps = 36/467 (7%)
Query: 51 NLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVL 110
+++ AR+VFD+IP+ + + +IR++V + + + + ++ M V +TF VL
Sbjct: 89 DVASARKVFDEIPE-RNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVL 147
Query: 111 NACARVPSLL---------------------EAVICGYTKIGLMDDAQRLFDSMAERNVI 149
AC+ +++ ++ Y K G + +A+ + D M+ R+V+
Sbjct: 148 KACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVV 207
Query: 150 SWSAMVAGYAN----------CGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAK 199
SW+++V GYA C M++ K +D T + + V+ V K
Sbjct: 208 SWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTT----TENVMYVK 263
Query: 200 KVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLG 259
+F ++ + W M Y++N A+E+Y M + V++ + AC
Sbjct: 264 DMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTS 323
Query: 260 DVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMIT 319
+ + + +++ + NALI M++KCG L+ A F +K++DV+S+++MI+
Sbjct: 324 ALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMIS 383
Query: 320 AFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIK 379
A+ G+ +A+ +F K+++ G+ P+ + F+ L ACSH GL+E+G F+LMT + I
Sbjct: 384 AYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKIT 443
Query: 380 PLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARH 439
P EHL CMVDLLGR+G++++A+ I D + WGALLGAC+VH + ++G +AA
Sbjct: 444 PRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADK 503
Query: 440 LLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGCS 486
L +L PE++G LL+NIYA G+W++ ++ ++ KK+PG S
Sbjct: 504 LFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGAS 550
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 134/340 (39%), Gaps = 80/340 (23%)
Query: 126 GYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKN------- 178
Y + + A+++FD + ERNVI + M+ Y N G + + M N
Sbjct: 83 AYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYT 142
Query: 179 ----------------------SVTWV----------AMIAGYGKCGEVREAKKVFDEIS 206
S T V +++ YGKCG + EA+ V DE+S
Sbjct: 143 FPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMS 202
Query: 207 EPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAI 266
D W ++ V Y QN A+E+ + M E+V+IS D A
Sbjct: 203 RRDVVSWNSLVVGYAQNQRFDDALEVCREM--ESVKISH--------------DAGTMAS 246
Query: 267 LAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGK 326
L V + YV + F ++ K ++S++ MI + +
Sbjct: 247 LLPAVSNTTTENVMYVKDM-----------------FFKMGKKSLVSWNVMIGVYMKNAM 289
Query: 327 SQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHL- 385
EA++++ +M +G EP+ V+ VL AC + G K + R K L +L
Sbjct: 290 PVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIER----KKLIPNLL 345
Query: 386 --TCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGA 423
++D+ + G LEKA + + K D +W A++ A
Sbjct: 346 LENALIDMYAKCGCLEKARDVFENMKSR-DVVSWTAMISA 384
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 86/181 (47%)
Query: 178 NSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMR 237
NS V ++ Y +V A+KVFDEI E + M YV NG+ ++++ M
Sbjct: 73 NSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMC 132
Query: 238 QENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLD 297
NVR + AC+ G + + + + T +V N L+ M+ KCG+L
Sbjct: 133 GCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLS 192
Query: 298 LAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACS 357
A + +DV+S++S++ +A + + +AL++ +M + I + T +L A S
Sbjct: 193 EARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVS 252
Query: 358 H 358
+
Sbjct: 253 N 253
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 164/483 (33%), Positives = 246/483 (50%), Gaps = 48/483 (9%)
Query: 1 MTSKYLVPRSKTFNQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFD 60
M S+ L S QLK++H+ +L+T ++ Q L L+ + GD + YARQVFD
Sbjct: 12 MLSELLRASSSKPKQLKKIHAIVLRT--GFSEKNSLLTQLLENLVVI-GD-MCYARQVFD 67
Query: 61 QIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLL 120
++ K + FLW +L + +V + +S+LLY KM LGV FT+ V+ A +++
Sbjct: 68 EMHKPRI-FLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDF- 125
Query: 121 EAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSV 180
CG+ +V+ + G+ G +
Sbjct: 126 ---SCGFA---------------LHAHVVKY-----GFGCLG-----------------I 145
Query: 181 TWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQEN 240
++ Y K GE+ A+ +F+ + D W A VQ G + A+E + M +
Sbjct: 146 VATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADA 205
Query: 241 VRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAW 300
V+ +V +SAC QLG +E+ + + D V NA + MH KCG + A
Sbjct: 206 VQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAAR 265
Query: 301 REFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGG 360
F +K ++V+S+S+MI +A +G S+EAL +F M+NEG+ PN VTF+GVL+ACSH G
Sbjct: 266 VLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAG 325
Query: 361 LVEDGCKQFELMTRVF--GIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWG 418
LV +G + F LM + ++P EH CMVDLLGRSG LE+A+ I D G WG
Sbjct: 326 LVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWG 385
Query: 419 ALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETE 478
ALLGAC VH + LG+ A L+E P+ LL+NIYA+ GKW + V+ + +
Sbjct: 386 ALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLG 445
Query: 479 KKK 481
KK
Sbjct: 446 TKK 448
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 145/343 (42%), Gaps = 55/343 (16%)
Query: 52 LSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLN 111
LS A +F+ + + K W + + V + ++ + KM V FT S+L+
Sbjct: 160 LSSAEFLFESM-QVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLS 218
Query: 112 ACARVPSL-----------LEAVICG----------YTKIGLMDDAQRLFDSMAERNVIS 150
AC ++ SL E + C + K G + A+ LF+ M +RNV+S
Sbjct: 219 ACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVS 278
Query: 151 WSAMVAGYANCGNMKAAKEFYDRMTEK----NSVTWVAMIAGYGKCGEVREAKKVF---- 202
WS M+ GYA G+ + A + M + N VT++ +++ G V E K+ F
Sbjct: 279 WSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMV 338
Query: 203 ---DEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGA-ISACTQL 258
D+ EP +A M ++G + A E K M E + + GA + AC
Sbjct: 339 QSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVE----PDTGIWGALLGACAVH 394
Query: 259 GDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIK---NKDVISYS 315
D+ + +A + E D +Y L ++++ G D + S+++ K V +YS
Sbjct: 395 RDMILGQKVADVLVETAPDIGSY-HVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYS 453
Query: 316 SM-----ITAFADHGKSQ-------EALDMFL-KMRNEGIEPN 345
S+ I F KS E LD L K+R G P+
Sbjct: 454 SVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPD 496
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 246 bits (628), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 158/516 (30%), Positives = 249/516 (48%), Gaps = 65/516 (12%)
Query: 37 YAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHR 96
Y Q + + + + AR VFD + K + W ++I + + + +++++ M
Sbjct: 153 YVQNALLAMYMNFGKVEMARDVFD-VMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVN 211
Query: 97 LGVLTSGFTFSSVLNACARVPSL---------------------LEAVICGYTKIGLMDD 135
V T S+L C + L A++ Y K G MD+
Sbjct: 212 ESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDE 271
Query: 136 AQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRM----TEKNSVT---------- 181
A+ +FD M R+VI+W+ M+ GY G+++ A E M N+VT
Sbjct: 272 ARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGD 331
Query: 182 ------------W-------------VAMIAGYGKCGEVREAKKVFDEISEPDASCWAAM 216
W ++I+ Y KC V +VF S+ W+A+
Sbjct: 332 ALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAI 391
Query: 217 TVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCC 276
VQN A+ ++K MR+E+V + + + A L D+ A + ++ +
Sbjct: 392 IAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGF 451
Query: 277 DRTNYVSNALIHMHSKCGYLDLAWREFSRI----KNKDVISYSSMITAFADHGKSQEALD 332
+ + L+H++SKCG L+ A + F+ I K+KDV+ + ++I+ + HG AL
Sbjct: 452 MSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQ 511
Query: 333 MFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLL 392
+F++M G+ PN++TF L ACSH GLVE+G F M + + H TC+VDLL
Sbjct: 512 VFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLL 571
Query: 393 GRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSA 452
GR+G+L++A++LI + WGALL AC H N +LGE+AA L EL PE TGN
Sbjct: 572 GRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYV 631
Query: 453 LLANIYASMGKWKDSEIVKMMISETEKKKSPGCSWI 488
LLANIYA++G+WKD E V+ M+ +K PG S I
Sbjct: 632 LLANIYAALGRWKDMEKVRSMMENVGLRKKPGHSTI 667
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 148/317 (46%), Gaps = 44/317 (13%)
Query: 51 NLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGV--LTSGFTFSS 108
+++YAR++F+++P+ + + +IR +V + +I ++ +M GV + G+T+
Sbjct: 64 HITYARKLFEEMPQ-SSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPF 122
Query: 109 VLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAK 168
V A + S+ K+GL+ R+ S R+ +A++A Y N G
Sbjct: 123 VAKAAGELKSM---------KLGLVVHG-RILRSWFGRDKYVQNALLAMYMNFG------ 166
Query: 169 EFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKA 228
+V A+ VFD + D W M Y +NGY
Sbjct: 167 -------------------------KVEMARDVFDVMKNRDVISWNTMISGYYRNGYMND 201
Query: 229 AIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIH 288
A+ M+ M E+V + +V + C L D+EM + K V+E V NAL++
Sbjct: 202 ALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVN 261
Query: 289 MHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVT 348
M+ KCG +D A F R++ +DVI+++ MI + + G + AL++ M+ EG+ PN VT
Sbjct: 262 MYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVT 321
Query: 349 FIGVLTACSHGGLVEDG 365
+++ C V DG
Sbjct: 322 IASLVSVCGDALKVNDG 338
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 119/250 (47%), Gaps = 11/250 (4%)
Query: 189 YGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAM 248
Y CG + A+K+F+E+ + + + YV+ G AI ++ M E V+
Sbjct: 59 YALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGY 118
Query: 249 VGAI--SACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRI 306
A +L +++ ++ + R YV NAL+ M+ G +++A F +
Sbjct: 119 TYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVM 178
Query: 307 KNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGC 366
KN+DVIS+++MI+ + +G +AL MF M NE ++ + T + +L C H +E G
Sbjct: 179 KNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGR 238
Query: 367 KQFELM-TRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACK 425
+L+ + G K E +V++ + G++++A + D + D TW C
Sbjct: 239 NVHKLVEEKRLGDK--IEVKNALVNMYLKCGRMDEAR-FVFDRMERRDVITW-----TCM 290
Query: 426 VHVNAELGEI 435
++ E G++
Sbjct: 291 INGYTEDGDV 300
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 93/258 (36%), Gaps = 76/258 (29%)
Query: 2 TSKYLVPRSKTFNQLKQ---VHSYLLKT-----LTKPHDQYHYYAQFLIRLLQLPGDNLS 53
T L+P L+Q +H YL KT L H Y++ L
Sbjct: 422 TLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKC---------GTLE 472
Query: 54 YARQVFDQIP---KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVL 110
A ++F+ I K K LW +LI + +H ++ ++ +M R GV + TF+S L
Sbjct: 473 SAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSAL 532
Query: 111 NACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEF 170
NAC+ GL+++ LF M E
Sbjct: 533 NACSHS--------------GLVEEGLTLFRFMLEH------------------------ 554
Query: 171 YDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEIS-EPDASCWAAMTVCYVQNGYAKAA 229
Y + N T + + G+ G + EA + I EP ++ W A+ V
Sbjct: 555 YKTLARSNHYTCIVDL--LGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVT------- 605
Query: 230 IEMYKVMRQENVRISEVA 247
ENV++ E+A
Sbjct: 606 --------HENVQLGEMA 615
Score = 35.8 bits (81), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 232 MYKVMRQENVRISEVAMVGAI---SACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIH 288
M +V+R+ N +S V ++ A TQ + L HV G + ++ + L
Sbjct: 1 MSEVLRRANNALSSVKQYQSLLNHFAATQ--SISKTKALHCHVITGG-RVSGHILSTLSV 57
Query: 289 MHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIE--PNQ 346
++ CG++ A + F + ++SY+ +I + G +A+ +F++M +EG++ P+
Sbjct: 58 TYALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDG 117
Query: 347 VTF 349
T+
Sbjct: 118 YTY 120
>sp|Q1PFQ9|PPR62_ARATH Pentatricopeptide repeat-containing protein At1g28690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2
SV=2
Length = 520
Score = 244 bits (624), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 152/477 (31%), Positives = 253/477 (53%), Gaps = 16/477 (3%)
Query: 17 KQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLWTSLIR 76
K++H+ ++KT +P + + LI L L LSYARQVFD++PK T + +I
Sbjct: 54 KKIHADIIKTGFQP--DLNISIKLLI--LHLKCGCLSYARQVFDELPK-PTLSAYNYMIS 108
Query: 77 NHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPS--LLEAVICGYTKIGLMD 134
++ H ++ +LL +M G G+T S VL A S +L +C
Sbjct: 109 GYLKHGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRGSTMILPRSLCRLVH----- 163
Query: 135 DAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGE 194
R+ E + + +A+V Y G +++A+ ++ M ++N V +MI+GY G
Sbjct: 164 --ARIIKCDVELDDVLITALVDTYVKSGKLESARTVFETMKDENVVCCTSMISGYMNQGF 221
Query: 195 VREAKKVFDEISEPDASCWAAMTVCYVQNG-YAKAAIEMYKVMRQENVRISEVAMVGAIS 253
V +A+++F+ D + AM + ++G AK +++MY M++ + I
Sbjct: 222 VEDAEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIG 281
Query: 254 ACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVIS 313
AC+ L E+ + + + + ++L+ M++KCG ++ A R F +++ K+V S
Sbjct: 282 ACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFS 341
Query: 314 YSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMT 373
++SMI + +G +EAL++F +M+ IEPN VTF+G L+ACSH GLV+ G + FE M
Sbjct: 342 WTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGYEIFESMQ 401
Query: 374 RVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELG 433
R + +KP EH C+VDL+GR+G L KA + D+ W ALL +C +H N EL
Sbjct: 402 RDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCNLHGNVELA 461
Query: 434 EIAARHLLELGPEKTGNSAL-LANIYASMGKWKDSEIVKMMISETEKKKSPGCSWIS 489
IAA L +L +K + L L+N+YAS KW + ++ ++ K+ G SW S
Sbjct: 462 SIAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIREVMKRRRISKTIGRSWTS 518
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 244 bits (624), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 152/500 (30%), Positives = 257/500 (51%), Gaps = 65/500 (13%)
Query: 52 LSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLN 111
L ARQ+F+++ + W ++I ++V + ++ L+ +M+ G+++ G +S L
Sbjct: 479 LEDARQIFERMCD-RDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLK 537
Query: 112 ACARVPSLLE-------AVICG--------------YTKIGLMDDAQRLFDSMAERNVIS 150
AC V L + +V CG Y+K G++ DA+++F S+ E +V+S
Sbjct: 538 ACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVS 597
Query: 151 WSAMVAGYANCGNMKAA----KEFYDRMTEKNSVTWVAMIA------------------- 187
+A++AGY+ N++ A +E R + +T+ ++
Sbjct: 598 MNALIAGYSQ-NNLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQIT 656
Query: 188 --GYGKCGE---------------VREAKKVFDEISEPDA-SCWAAMTVCYVQNGYAKAA 229
G+ GE + EA +F E+S P + W M + QNG+ + A
Sbjct: 657 KRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEA 716
Query: 230 IEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHM 289
++ YK MR + V + V + C+ L + + + D SN LI M
Sbjct: 717 LKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDM 776
Query: 290 HSKCGYLDLAWREFSRIKNK-DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVT 348
++KCG + + + F ++ + +V+S++S+I +A +G +++AL +F MR I P+++T
Sbjct: 777 YAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEIT 836
Query: 349 FIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDY 408
F+GVLTACSH G V DG K FE+M +GI+ +H+ CMVDLLGR G L++A I
Sbjct: 837 FLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQ 896
Query: 409 KDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSE 468
DA W +LLGAC++H + GEI+A L+EL P+ + LL+NIYAS G W+ +
Sbjct: 897 NLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKAN 956
Query: 469 IVKMMISETEKKKSPGCSWI 488
++ ++ + KK PG SWI
Sbjct: 957 ALRKVMRDRGVKKVPGYSWI 976
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/395 (22%), Positives = 169/395 (42%), Gaps = 55/395 (13%)
Query: 50 DNLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSV 109
D +S AR+VF+ I T WT L +V +++L++ +M G F +V
Sbjct: 209 DRISDARRVFEWIVDPNT-VCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTV 267
Query: 110 LNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKE 169
+N Y ++G + DA+ LF M+ +V++W+ M++G+ G A E
Sbjct: 268 INT--------------YIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIE 313
Query: 170 FYDRMTEK---------------------------------------NSVTWVAMIAGYG 190
++ M + N ++++ Y
Sbjct: 314 YFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYS 373
Query: 191 KCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVG 250
KC ++ A KVF+ + E + W AM Y NG + +E++ M+ I +
Sbjct: 374 KCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTS 433
Query: 251 AISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKD 310
+S C D+EM + + + + +V NAL+ M++KCG L+ A + F R+ ++D
Sbjct: 434 LLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRD 493
Query: 311 VISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFE 370
++++++I ++ EA D+F +M GI + L AC+H + G KQ
Sbjct: 494 NVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQG-KQVH 552
Query: 371 LMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLI 405
++ G+ + ++D+ + G ++ A +
Sbjct: 553 CLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVF 587
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 151/347 (43%), Gaps = 63/347 (18%)
Query: 71 WTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSL-------LEAV 123
W +I H +I + M + V ++ T SVL+A V +L EA+
Sbjct: 295 WNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAI 354
Query: 124 ICG--------------YTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCG------- 162
G Y+K M+ A ++F+++ E+N + W+AM+ GYA+ G
Sbjct: 355 KLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVME 414
Query: 163 ---NMKAAKEFYDRMT-----------------------------EKNSVTWVAMIAGYG 190
+MK++ D T KN A++ Y
Sbjct: 415 LFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYA 474
Query: 191 KCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVG 250
KCG + +A+++F+ + + D W + YVQ+ A +++K M + +
Sbjct: 475 KCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLAS 534
Query: 251 AISACTQL-GDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNK 309
+ ACT + G + + V G DR + ++LI M+SKCG + A + FS +
Sbjct: 535 TLKACTHVHGLYQGKQVHCLSVKCGL-DRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEW 593
Query: 310 DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTAC 356
V+S +++I ++ + +EA+ +F +M G+ P+++TF ++ AC
Sbjct: 594 SVVSMNALIAGYSQN-NLEEAVVLFQEMLTRGVNPSEITFATIVEAC 639
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 113/515 (21%), Positives = 211/515 (40%), Gaps = 127/515 (24%)
Query: 17 KQVHSYLLKTLTKPHDQYHYYAQFLIRLLQ--LPGDNLSYARQVFDQIPKCKTQFLWTSL 74
++++ ++L + HDQ H RLL+ L L +R+VFD++P Q L +L
Sbjct: 31 RRIYGHVLPS----HDQIHQ------RLLEICLGQCKLFKSRKVFDEMP----QRLALAL 76
Query: 75 IRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLN---ACARVP------SLLE---- 121
+H+ +S++L G+ + G +++++ CA+V LE
Sbjct: 77 RIGKAVHS---KSLIL-------GIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLEKDVT 126
Query: 122 ---AVICGYTKIGLMDDAQRLFDSMAER----NVISWSAMVAGYANCGNMKAAKEFYDRM 174
+++ Y+ IG R F S+ E N ++S +++ A N++ ++ + M
Sbjct: 127 AWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSM 186
Query: 175 T----EKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAI 230
E+NS A++ Y KC + +A++VF+ I +P+ CW + YV+ G + A+
Sbjct: 187 IKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAV 246
Query: 231 EMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMH 290
+++ MR E R +A V I+ +LG ++ A +L
Sbjct: 247 LVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLL----------------------- 283
Query: 291 SKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFI 350
F + + DV++++ MI+ G A++ F MR ++ + T
Sbjct: 284 ------------FGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLG 331
Query: 351 GVLTACS-----------HGGLVEDG-----------------CKQFELMTRVFGIKPLT 382
VL+A H ++ G C++ E +VF + L
Sbjct: 332 SVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVF--EALE 389
Query: 383 EH----LTCMVDLLGRSGQLEKAHSLIMDYKDF---CDAGTWGALLGACKVHVNAELGEI 435
E M+ +G+ K L MD K D T+ +LL C + E+G
Sbjct: 390 EKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQ 449
Query: 436 AARHLLELGPEKT---GNSALLANIYASMGKWKDS 467
+++ K GN+ L ++YA G +D+
Sbjct: 450 FHSIIIKKKLAKNLFVGNA--LVDMYAKCGALEDA 482
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/454 (30%), Positives = 244/454 (53%), Gaps = 14/454 (3%)
Query: 36 YYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQ-FLWTSLIRNHVLHAHFRQSILLYAKM 94
Y L+++ L G + AR VFD+ +CK F W +I + + +SI L +M
Sbjct: 171 YVQNALVKMYSLCG-LMDMARGVFDR--RCKEDVFSWNLMISGYNRMKEYEESIELLVEM 227
Query: 95 HRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAM 154
R V + T VL+AC++V + +C + + + E ++ +A+
Sbjct: 228 ERNLVSPTSVTLLLVLSACSKVK---DKDLCKRVH-------EYVSECKTEPSLRLENAL 277
Query: 155 VAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWA 214
V YA CG M A + M ++ ++W +++ GY + G ++ A+ FD++ D W
Sbjct: 278 VNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWT 337
Query: 215 AMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEG 274
M Y++ G ++E+++ M+ + E MV ++AC LG +E+ + ++D+
Sbjct: 338 IMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKN 397
Query: 275 CCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMF 334
V NALI M+ KCG + A + F + +D ++++M+ A++G+ QEA+ +F
Sbjct: 398 KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVF 457
Query: 335 LKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGR 394
+M++ I+P+ +T++GVL+AC+H G+V+ K F M I+P H CMVD+LGR
Sbjct: 458 FQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGR 517
Query: 395 SGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALL 454
+G +++A+ ++ ++ WGALLGA ++H + + E+AA+ +LEL P+ ALL
Sbjct: 518 AGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALL 577
Query: 455 ANIYASMGKWKDSEIVKMMISETEKKKSPGCSWI 488
NIYA +WKD V+ I + KK+PG S I
Sbjct: 578 CNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLI 611
Score = 119 bits (297), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 105/445 (23%), Positives = 194/445 (43%), Gaps = 82/445 (18%)
Query: 11 KTFNQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFL 70
KT +Q KQ+HS + P+ + + + G ++SYA ++F +IP+ +
Sbjct: 45 KTTDQFKQLHSQSITRGVAPNPTFQ--KKLFVFWCSRLGGHVSYAYKLFVKIPEPDV-VV 101
Query: 71 WTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLL---EAVICGY 127
W ++I+ + + LY M + GV TF +LN R L + + C
Sbjct: 102 WNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHV 161
Query: 128 TKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIA 187
K GL N+ +A+V Y+ CG M A+ +DR +++ +W MI+
Sbjct: 162 VKFGL------------GSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMIS 209
Query: 188 GYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVA 247
GY + E E +IE+ M + V + V
Sbjct: 210 GYNRMKEYEE-------------------------------SIELLVEMERNLVSPTSVT 238
Query: 248 MVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIK 307
++ +SAC+++ D ++ + ++V E + + + NAL++ ++ CG +D+A R F +K
Sbjct: 239 LLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMK 298
Query: 308 NKDVISYSSMITAFADHGKSQ-------------------------------EALDMFLK 336
+DVIS++S++ + + G + E+L++F +
Sbjct: 299 ARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFRE 358
Query: 337 MRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSG 396
M++ G+ P++ T + VLTAC+H G +E G + + IK ++D+ + G
Sbjct: 359 MQSAGMIPDEFTMVSVLTACAHLGSLEIG-EWIKTYIDKNKIKNDVVVGNALIDMYFKCG 417
Query: 397 QLEKAHSLIMDYKDFCDAGTWGALL 421
EKA + D D D TW A++
Sbjct: 418 CSEKAQKVFHDM-DQRDKFTWTAMV 441
>sp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protein At1g34160
OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2
Length = 581
Score = 243 bits (619), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 160/499 (32%), Positives = 252/499 (50%), Gaps = 70/499 (14%)
Query: 6 LVPRSKTFNQLKQVHSYLLKTLTKPHDQYHYY-AQFLIRLLQLPGDNLSYARQVFDQIPK 64
++ + +F+Q+KQ+ S+ L T H Q + ++ L R P +LS+A Q+F IPK
Sbjct: 9 MIQKCVSFSQIKQLQSHFL---TAGHFQSSFLRSRLLERCAISPFGDLSFAVQIFRYIPK 65
Query: 65 CKTQFLWTSLIRNHVLHAHFRQSILLYAKMH----------RLGVLTSGFTFSSVLNACA 114
T W ++IR +H + Y M R+ LT FT L ACA
Sbjct: 66 PLTND-WNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFT----LKACA 120
Query: 115 RV--PSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYD 172
R S ++ + C + GL D
Sbjct: 121 RALCSSAMDQLHCQINRRGLSAD------------------------------------- 143
Query: 173 RMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEM 232
S+ ++ Y K G++ A K+FDE+ D + W A+ V A A+E+
Sbjct: 144 ------SLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAMEL 197
Query: 233 YKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSK 292
YK M E +R SEV +V A+ AC+ LGDV+ +++ G + VSNA I M+SK
Sbjct: 198 YKRMETEGIRRSEVTVVAALGACSHLGDVKEG----ENIFHGYSNDNVIVSNAAIDMYSK 253
Query: 293 CGYLDLAWREFSRIK-NKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIG 351
CG++D A++ F + K V+++++MIT FA HG++ AL++F K+ + GI+P+ V+++
Sbjct: 254 CGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLA 313
Query: 352 VLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDF 411
LTAC H GLVE G F M G++ +H C+VDLL R+G+L +AH +I
Sbjct: 314 ALTACRHAGLVEYGLSVFNNMA-CKGVERNMKHYGCVVDLLSRAGRLREAHDIICSMSMI 372
Query: 412 CDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVK 471
D W +LLGA +++ + E+ EIA+R + E+G G+ LL+N+YA+ G+WKD V+
Sbjct: 373 PDPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDGDFVLLSNVYAAQGRWKDVGRVR 432
Query: 472 MMISETEKKKSPGCSWISS 490
+ + KK PG S+I +
Sbjct: 433 DDMESKQVKKIPGLSYIEA 451
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 242 bits (618), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 146/440 (33%), Positives = 233/440 (52%), Gaps = 20/440 (4%)
Query: 69 FLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNA---CARVPSLLEA--- 122
F++ +L + V +H +S+ LY +M R V S +T+SS++ A +R L+A
Sbjct: 92 FVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFASRFGESLQAHIW 151
Query: 123 -------------VICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKE 169
+I Y+ G + +A+++FD M ER+ I+W+ MV+ Y +M +A
Sbjct: 152 KFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANS 211
Query: 170 FYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAA 229
++M+EKN T +I GY G + +A+ +F+++ D W M Y QN + A
Sbjct: 212 LANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREA 271
Query: 230 IEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHM 289
I ++ M +E + EV M ISAC LG +E+ + + + Y+ +AL+ M
Sbjct: 272 IAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDM 331
Query: 290 HSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTF 349
+SKCG L+ A F + K++ ++S+I A HG +QEAL MF KM E ++PN VTF
Sbjct: 332 YSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTF 391
Query: 350 IGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK 409
+ V TAC+H GLV++G + + M + I EH MV L ++G + +A LI + +
Sbjct: 392 VSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNME 451
Query: 410 DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKD-SE 468
+A WGALL C++H N + EIA L+ L P +G LL ++YA +W+D +E
Sbjct: 452 FEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAE 511
Query: 469 IVKMMISETEKKKSPGCSWI 488
I M +K PG S I
Sbjct: 512 IRGRMRELGIEKICPGTSSI 531
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 21/144 (14%)
Query: 51 NLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVL 110
+L A VF +PK K F W S+I H ++++ ++AKM V + TF SV
Sbjct: 337 SLERALLVFFNLPK-KNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVF 395
Query: 111 NACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE-----RNVISWSAMVAGYANCGNMK 165
AC T GL+D+ +R++ SM + NV + MV ++ G +
Sbjct: 396 TAC--------------THAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIY 441
Query: 166 AAKEFYDRMT-EKNSVTWVAMIAG 188
A E M E N+V W A++ G
Sbjct: 442 EALELIGNMEFEPNAVIWGALLDG 465
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 242 bits (618), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 159/548 (29%), Positives = 273/548 (49%), Gaps = 78/548 (14%)
Query: 5 YLVPRSKTFNQLKQVHS-YLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIP 63
+L+ + + NQL+Q+ + LL ++ KP+ FLI GD +Y+ +F +
Sbjct: 42 FLLKKCISVNQLRQIQAQMLLHSVEKPN--------FLIPKAVELGD-FNYSSFLF-SVT 91
Query: 64 KCKTQFLWTSLIR--NHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSL-- 119
+ + + +IR + + H ++ LY +M G+ FT++ V ACA++ +
Sbjct: 92 EEPNHYSFNYMIRGLTNTWNDH-EAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGV 150
Query: 120 ------------LE-------AVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYAN 160
LE ++I Y K G + A++LFD + ER+ +SW++M++GY+
Sbjct: 151 GRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSE 210
Query: 161 CGNMKAAKEFYDRMTEK----NSVTWVAM------------------------------- 185
G K A + + +M E+ + T V+M
Sbjct: 211 AGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFL 270
Query: 186 ----IAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENV 241
I+ YGKCG++ A++VF+++ + D W AM Y QNG + A +++ M + V
Sbjct: 271 GSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGV 330
Query: 242 RISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWR 301
+ +SAC +G +E+ + H E YV+ L+ M+ KCG ++ A R
Sbjct: 331 SPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALR 390
Query: 302 EFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGL 361
F + K+ ++++MITA+A G ++EAL +F +M + P+ +TFIGVL+AC H GL
Sbjct: 391 VFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACVHAGL 447
Query: 362 VEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALL 421
V GC+ F M+ +FG+ P EH T ++DLL R+G L++A + + D A+L
Sbjct: 448 VHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAIL 507
Query: 422 GACKVHVNAELGEIAARHLLELGPEKT-GNSALLANIYASMGKWKDSEIVKMMISETEKK 480
GAC + + E A R L+E+ K GN + +N+ A M W +S ++ ++ +
Sbjct: 508 GACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVV 567
Query: 481 KSPGCSWI 488
K+PGCSWI
Sbjct: 568 KTPGCSWI 575
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 242 bits (617), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 141/457 (30%), Positives = 242/457 (52%), Gaps = 25/457 (5%)
Query: 55 ARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLG-VLTSGFTFSSVLNAC 113
AR +FD++ + + WT++I + F L+ +M + G V + T + + AC
Sbjct: 227 ARSLFDRMTE-RNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKAC 285
Query: 114 ----------------ARVP-----SLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWS 152
+R+P L +++ Y+K+G M +A+ +F M ++ +SW+
Sbjct: 286 RDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWN 345
Query: 153 AMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASC 212
+++ G + A E +++M K+ V+W MI G+ GE+ + ++F + E D
Sbjct: 346 SLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNIT 405
Query: 213 WAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGD-VEMAAILAKHV 271
W AM +V NGY + A+ + M Q+ V + +SA L D +E I + V
Sbjct: 406 WTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVV 465
Query: 272 DEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEAL 331
+ + V N+L+ M+ KCG + A++ FS I +++SY++MI+ ++ +G ++AL
Sbjct: 466 KMNIVNDLS-VQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKAL 524
Query: 332 DMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDL 391
+F + + G EPN VTF+ +L+AC H G V+ G K F+ M + I+P +H CMVDL
Sbjct: 525 KLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDL 584
Query: 392 LGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNS 451
LGRSG L+ A +LI +G WG+LL A K H+ +L E+AA+ L+EL P+
Sbjct: 585 LGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPY 644
Query: 452 ALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSWI 488
+L+ +Y+ +GK +D + + + KK PG SWI
Sbjct: 645 VVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWI 681
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 138/285 (48%), Gaps = 16/285 (5%)
Query: 122 AVICGYTKIGLMDDAQRLF--DSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNS 179
+I G+ + G D+A+ L+ + R+ ++ + +++GY G A + M K
Sbjct: 149 TMITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEV 208
Query: 180 VTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQE 239
V+ +M+ GY K G + +A+ +FD ++E + W AM Y + G+ + ++ MRQE
Sbjct: 209 VSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQE 268
Query: 240 -NVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDL 298
+V+++ + AC + + V + ++ N+L+ M+SK GY+
Sbjct: 269 GDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGE 328
Query: 299 AWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSH 358
A F +KNKD +S++S+IT + EA ++F KM + + V++ ++ S
Sbjct: 329 AKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGK----DMVSWTDMIKGFSG 384
Query: 359 GGLVEDGCKQFELMTRVFGIKPLTEHL--TCMVDLLGRSGQLEKA 401
G + K EL FG+ P +++ T M+ +G E+A
Sbjct: 385 KGEIS---KCVEL----FGMMPEKDNITWTAMISAFVSNGYYEEA 422
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 148/305 (48%), Gaps = 20/305 (6%)
Query: 124 ICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWV 183
I + + G + +A+ +F M+ R+++SW AM++ YA G M A + +D M + + ++
Sbjct: 57 ISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTTSYN 116
Query: 184 AMIAGY--GKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENV 241
AMI KC ++ +A ++F +I E +A +A M +V+ G A +Y + V
Sbjct: 117 AMITAMIKNKC-DLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYA---ETPV 172
Query: 242 RISE-VAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAW 300
+ + VA +S + G A V +G + ++++H + K G + A
Sbjct: 173 KFRDSVASNVLLSGYLRAGKWNEAV----RVFQGMAVKEVVSCSSMVHGYCKMGRIVDAR 228
Query: 301 REFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEG-IEPNQVTFIGVLTACSHG 359
F R+ ++VI++++MI + G ++ +FL+MR EG ++ N T + AC
Sbjct: 229 SLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDF 288
Query: 360 GLVEDGCKQFELMTRV---FGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGT 416
+G + L++R+ F + L L M LG G+ KA +M K D+ +
Sbjct: 289 VRYREGSQIHGLVSRMPLEFDLF-LGNSLMSMYSKLGYMGE-AKAVFGVMKNK---DSVS 343
Query: 417 WGALL 421
W +L+
Sbjct: 344 WNSLI 348
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 116/238 (48%), Gaps = 11/238 (4%)
Query: 152 SAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDAS 211
++ ++ +A GN++ A+ + +M+ ++ V+W+AMI+ Y + G++ +A +VFDE+ +
Sbjct: 54 NSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTT 113
Query: 212 CWAAMTVCYVQNG-YAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKH 270
+ AM ++N A E++ + ++N V+ I+ + G + A L +
Sbjct: 114 SYNAMITAMIKNKCDLGKAYELFCDIPEKNA----VSYATMITGFVRAGRFDEAEFL--Y 167
Query: 271 VDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEA 330
+ R + SN L+ + + G + A R F + K+V+S SSM+ + G+ +A
Sbjct: 168 AETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDA 227
Query: 331 LDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCM 388
+F +M E N +T+ ++ G EDG F M + +K + L M
Sbjct: 228 RSLFDRM----TERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVM 281
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 240 bits (612), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/484 (29%), Positives = 230/484 (47%), Gaps = 70/484 (14%)
Query: 70 LWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSL---------- 119
LW ++ + L R S ++ +M ++ + +T+ S+L C R+ L
Sbjct: 457 LWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI 516
Query: 120 ------LEAVICG-----YTKIGLMDDAQRLFDSMAERNVISWSAMVAGYAN-------- 160
L A +C Y K+G +D A + A ++V+SW+ M+AGY
Sbjct: 517 IKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKAL 576
Query: 161 ------------------------CGNMKAAKE------------FYDRMTEKNSVTWVA 184
C ++A KE F + +N A
Sbjct: 577 TTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQN-----A 631
Query: 185 MIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRIS 244
++ Y +CG++ E+ F++ D W A+ + Q+G + A+ ++ M +E + +
Sbjct: 632 LVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNN 691
Query: 245 EVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFS 304
A+ A ++ +++ + + + D V NALI M++KCG + A ++F
Sbjct: 692 NFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFL 751
Query: 305 RIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVED 364
+ K+ +S++++I A++ HG EALD F +M + + PN VT +GVL+ACSH GLV+
Sbjct: 752 EVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDK 811
Query: 365 GCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGAC 424
G FE M +G+ P EH C+VD+L R+G L +A I + DA W LL AC
Sbjct: 812 GIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSAC 871
Query: 425 KVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPG 484
VH N E+GE AA HLLEL PE + LL+N+YA KW ++ + + E KK PG
Sbjct: 872 VVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPG 931
Query: 485 CSWI 488
SWI
Sbjct: 932 QSWI 935
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/437 (22%), Positives = 189/437 (43%), Gaps = 63/437 (14%)
Query: 55 ARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACA 114
AR+VFD + + K W ++I + ++I L+ M+ LG++ + + FSSVL+AC
Sbjct: 241 ARRVFDGL-RLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACK 299
Query: 115 RVPSL---------------------LEAVICGYTKIGLMDDAQRLFDSMAERNVISWSA 153
++ SL A++ Y +G + A+ +F +M++R+ ++++
Sbjct: 300 KIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNT 359
Query: 154 MVAGYANCGNMKAAKEFYDRM----TEKNSVTWVAMIAG--------------------- 188
++ G + CG + A E + RM E +S T +++
Sbjct: 360 LINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLG 419
Query: 189 --------------YGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYK 234
Y KC ++ A F E + W M V Y + + +++
Sbjct: 420 FASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFR 479
Query: 235 VMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCG 294
M+ E + ++ + C +LGD+E+ + + + YV + LI M++K G
Sbjct: 480 QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLG 539
Query: 295 YLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLT 354
LD AW R KDV+S+++MI + + +AL F +M + GI ++V ++
Sbjct: 540 KLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVS 599
Query: 355 ACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDA 414
AC+ +++G +Q V G +V L R G++E+++ L + + D
Sbjct: 600 ACAGLQALKEG-QQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESY-LAFEQTEAGDN 657
Query: 415 GTWGALLGACKVHVNAE 431
W AL+ + N E
Sbjct: 658 IAWNALVSGFQQSGNNE 674
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 105/495 (21%), Positives = 214/495 (43%), Gaps = 70/495 (14%)
Query: 12 TFNQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLW 71
+ ++ +++HS +LK D ++ L GD L A +VFD++P+ +T F W
Sbjct: 100 SLDEGRKLHSQILKL---GLDSNGCLSEKLFDFYLFKGD-LYGAFKVFDEMPE-RTIFTW 154
Query: 72 TSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNAC--------------ARV- 116
+I+ + L+ +M V + TFS VL AC AR+
Sbjct: 155 NKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIL 214
Query: 117 -PSLLEA-VICG-----YTKIGLMDDAQRLFDSMAERNVISWSAMVAG------------ 157
L ++ V+C Y++ G +D A+R+FD + ++ SW AM++G
Sbjct: 215 YQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIR 274
Query: 158 --------------YANCGNMKAAKEFYD-RMTEK----------NSVTWV--AMIAGYG 190
YA + A K+ + E+ +S T+V A+++ Y
Sbjct: 275 LFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYF 334
Query: 191 KCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVG 250
G + A+ +F +S+ DA + + Q GY + A+E++K M + + +
Sbjct: 335 HLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLAS 394
Query: 251 AISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKD 310
+ AC+ G + L + + N + AL+++++KC ++ A F + ++
Sbjct: 395 LVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVEN 454
Query: 311 VISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCK-QF 369
V+ ++ M+ A+ + + +F +M+ E I PNQ T+ +L C G +E G +
Sbjct: 455 VVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHS 514
Query: 370 ELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVN 429
+++ F + + ++D+ + G+L+ A +++ + D +W ++ +
Sbjct: 515 QIIKTNFQLNAYV--CSVLIDMYAKLGKLDTAWDILIRFAG-KDVVSWTTMIAGYTQYNF 571
Query: 430 AELGEIAARHLLELG 444
+ R +L+ G
Sbjct: 572 DDKALTTFRQMLDRG 586
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 117/267 (43%), Gaps = 9/267 (3%)
Query: 193 GEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAI 252
G++ A KVFDE+ E W M ++ M ENV +E G +
Sbjct: 134 GDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVL 193
Query: 253 SACTQLGDVE---MAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNK 309
AC + G V + I A+ + +G D T V N LI ++S+ G++DLA R F ++ K
Sbjct: 194 EAC-RGGSVAFDVVEQIHARILYQGLRDST-VVCNPLIDLYSRNGFVDLARRVFDGLRLK 251
Query: 310 DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQF 369
D S+ +MI+ + + EA+ +F M GI P F VL+AC +E G +Q
Sbjct: 252 DHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG-EQL 310
Query: 370 ELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALL-GACKVHV 428
+ G T +V L G L A + + DA T+ L+ G +
Sbjct: 311 HGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQR-DAVTYNTLINGLSQCGY 369
Query: 429 NAELGEIAAR-HLLELGPEKTGNSALL 454
+ E+ R HL L P+ ++L+
Sbjct: 370 GEKAMELFKRMHLDGLEPDSNTLASLV 396
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 239 bits (609), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 144/489 (29%), Positives = 245/489 (50%), Gaps = 69/489 (14%)
Query: 69 FLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLE------- 121
F W S+I + +++L ++ M +L + + +F + AC+ + +
Sbjct: 42 FSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQ 101
Query: 122 --------------AVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGN-MKA 166
A+I Y+ G ++DA+++FD + +RN++SW++M+ GY GN + A
Sbjct: 102 AFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDA 161
Query: 167 AKEFYDRMTEKN---------SVTWVAMIAG----------------------------- 188
F D + ++N S+ V++I+
Sbjct: 162 VSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVG 221
Query: 189 ------YGKCGE--VREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYK-VMRQE 239
Y K GE V A+K+FD+I + D + ++ Y Q+G + A E+++ +++ +
Sbjct: 222 NTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNK 281
Query: 240 NVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLA 299
V + + + + A + G + + + V + V ++I M+ KCG ++ A
Sbjct: 282 VVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETA 341
Query: 300 WREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHG 359
+ F R+KNK+V S+++MI + HG + +AL++F M + G+ PN +TF+ VL ACSH
Sbjct: 342 RKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHA 401
Query: 360 GLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGA 419
GL +G + F M FG++P EH CMVDLLGR+G L+KA+ LI K D+ W +
Sbjct: 402 GLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSS 461
Query: 420 LLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479
LL AC++H N EL EI+ L EL G LL++IYA G+WKD E V+M++
Sbjct: 462 LLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGL 521
Query: 480 KKSPGCSWI 488
K PG S +
Sbjct: 522 VKPPGFSLL 530
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 84/379 (22%), Positives = 151/379 (39%), Gaps = 113/379 (29%)
Query: 52 LSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKM------HRLGVLTSGFT 105
L AR+VFD+IPK + WTS+IR + L+ + ++ L+ + +
Sbjct: 127 LEDARKVFDEIPK-RNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMG 185
Query: 106 FSSVLNACARVPS--LLEAVICGYTKIG----------LMDD-----------AQRLFDS 142
SV++AC+RVP+ L E++ K G L+D A+++FD
Sbjct: 186 LVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQ 245
Query: 143 MAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVA------------------ 184
+ +++ +S++++++ YA G A E + R+ + VT+ A
Sbjct: 246 IVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRI 305
Query: 185 ----------------------MIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQ 222
+I Y KCG V A+K FD + + W AM Y
Sbjct: 306 GKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGM 365
Query: 223 NGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYV 282
+G+A A+E++ M VR + + V ++AC+ G HV+
Sbjct: 366 HGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAG---------LHVE---------- 406
Query: 283 SNALIHMHSKCGYLDLAWREFSRIKNKDVIS-----YSSMITAFADHGKSQEALDMFLKM 337
WR F+ +K + + Y M+ G Q+A D+ +M
Sbjct: 407 ----------------GWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRM 450
Query: 338 RNEGIEPNQVTFIGVLTAC 356
+ ++P+ + + +L AC
Sbjct: 451 K---MKPDSIIWSSLLAAC 466
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 81/166 (48%), Gaps = 20/166 (12%)
Query: 205 ISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDV--- 261
+ + D W ++ ++G + A+ + MR+ ++ + + AI AC+ L D+
Sbjct: 36 VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSG 95
Query: 262 ----EMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSM 317
+ A + D +VS+ALI M+S CG L+ A + F I ++++S++SM
Sbjct: 96 KQTHQQAFVFGYQSDI-------FVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSM 148
Query: 318 ITAFADHGKSQEALDMFLKMRNEGIEPNQVTF------IGVLTACS 357
I + +G + +A+ +F + + + + F + V++ACS
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACS 194
Score = 40.0 bits (92), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 303 FSRIKNK-DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGL 361
F+R +K DV S++S+I A G S EAL F MR + P + +F + ACS
Sbjct: 32 FNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFD 91
Query: 362 VEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLI 405
+ G KQ VFG + + ++ + G+LE A +
Sbjct: 92 IFSG-KQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVF 134
>sp|Q9LVF9|PP245_ARATH Pentatricopeptide repeat-containing protein At3g21470
OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1
Length = 523
Score = 238 bits (608), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 144/438 (32%), Positives = 240/438 (54%), Gaps = 25/438 (5%)
Query: 55 ARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACA 114
AR+VFD++P+ + W ++I ++ + VL SG F + + C
Sbjct: 100 ARKVFDEMPE-RNVATWNAMIGGYMSNGD--------------AVLASGL-FEEI-SVCR 142
Query: 115 RVPSLLEAVICGYTKIGLMDDAQRLFDSMA--ERNVISWSAMVAGYANCGNMKAAKEFYD 172
+ +E +I GY K ++ A+ LF+ M +NV +WS M+ Y N M+ A++F++
Sbjct: 143 NTVTWIE-MIKGYGKRIEIEKARELFERMPFELKNVKAWSVMLGVYVNNRKMEDARKFFE 201
Query: 173 RMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEM 232
+ EKN+ W M++GY + G+V EA+ +F + D W + Y QNGY+ AI+
Sbjct: 202 DIPEKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDA 261
Query: 233 YKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSK 292
+ M+ E V + +SAC Q G +++ + ++ + +VSNALI M++K
Sbjct: 262 FFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVSNALIDMYAK 321
Query: 293 CGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGV 352
CG L+ A F I + V +SMI+ A HGK +EAL+MF M + ++P+++TFI V
Sbjct: 322 CGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITFIAV 381
Query: 353 LTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFC 412
LTAC HGG + +G K F M + +KP +H C++ LLGRSG+L++A+ L+ +
Sbjct: 382 LTACVHGGFLMEGLKIFSEM-KTQDVKPNVKHFGCLIHLLGRSGKLKEAYRLVKEMHVKP 440
Query: 413 DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNS----ALLANIYASMGKWKDSE 468
+ GALLGACKVH++ E+ E + + G S A ++N+YA +W+ +E
Sbjct: 441 NDTVLGALLGACKVHMDTEMAEQVMKIIETAGSITNSYSENHLASISNLYAHTERWQTAE 500
Query: 469 IVKMMISETEKKKSPGCS 486
+++ + + +KSPG S
Sbjct: 501 ALRVEMEKRGLEKSPGLS 518
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 170/345 (49%), Gaps = 32/345 (9%)
Query: 68 QFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGY 127
+F ++LI+NH+ Q+++LY + R GV G+ VP +L A C
Sbjct: 11 EFHVSNLIKNHISRGSPIQALVLYGGIRRRGVYFPGW-----------VPLILRACACVV 59
Query: 128 TKIGLMDDAQRLFDSMAER-----NVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTW 182
++ L +L S + + +V+ S++++ Y CG + +A++ +D M E+N TW
Sbjct: 60 PRVVL----GKLLHSESIKFGVCSDVMVGSSLISMYGKCGCVVSARKVFDEMPERNVATW 115
Query: 183 VAMIAGYGKCGEVREAKKVFDEISE-PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQE-- 239
AMI GY G+ A +F+EIS + W M Y + + A E+++ M E
Sbjct: 116 NAMIGGYMSNGDAVLASGLFEEISVCRNTVTWIEMIKGYGKRIEIEKARELFERMPFELK 175
Query: 240 NVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLA 299
NV+ V M+G ++ D A+ E ++ +V + ++ + + G + A
Sbjct: 176 NVKAWSV-MLGVYVNNRKMED-------ARKFFEDIPEKNAFVWSLMMSGYFRIGDVHEA 227
Query: 300 WREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHG 359
F R+ +D++ ++++I +A +G S +A+D F M+ EG EP+ VT +L+AC+
Sbjct: 228 RAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQS 287
Query: 360 GLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSL 404
G ++ G + L+ GI+ ++D+ + G LE A S+
Sbjct: 288 GRLDVGREVHSLINHR-GIELNQFVSNALIDMYAKCGDLENATSV 331
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 238 bits (606), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 146/429 (34%), Positives = 233/429 (54%), Gaps = 18/429 (4%)
Query: 66 KTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAV-- 123
+T WTS I + ++ ++ M GV + TF ++L+ C S EA+
Sbjct: 34 ETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGD 93
Query: 124 -ICGYT-KIGLMDDAQRLFDSMAERN-VISWSAMVAGYANCGNMKAAKEFYDRMTEKNSV 180
+ GY K+GL +RN V+ +A++ Y+ G K A+ +D M +KNSV
Sbjct: 94 LLHGYACKLGL------------DRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSV 141
Query: 181 TWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQEN 240
TW MI GY + G+V A K+FD++ E D W AM +V+ GY + A+ ++ M+
Sbjct: 142 TWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISG 201
Query: 241 VRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAW 300
V+ VA++ A++ACT LG + + ++V VSN+LI ++ +CG ++ A
Sbjct: 202 VKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFAR 261
Query: 301 REFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGG 360
+ F ++ + V+S++S+I FA +G + E+L F KM+ +G +P+ VTF G LTACSH G
Sbjct: 262 QVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVG 321
Query: 361 LVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGAL 420
LVE+G + F++M + I P EH C+VDL R+G+LE A L+ + G+L
Sbjct: 322 LVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSL 381
Query: 421 LGACKVH-VNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479
L AC H N L E +HL +L + N +L+N+YA+ GKW+ + ++ +
Sbjct: 382 LAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGL 441
Query: 480 KKSPGCSWI 488
KK PG S I
Sbjct: 442 KKQPGFSSI 450
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 237 bits (604), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 147/507 (28%), Positives = 247/507 (48%), Gaps = 59/507 (11%)
Query: 37 YAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHR 96
+ +FL+ + + YAR++FDQ P+ FL S+I+ ++ + S LY + +
Sbjct: 13 FTKFLV--ISASAVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRK 70
Query: 97 LGVLT-SGFTFSSVLNACARVPSLLEA---------------------VICGYTKIGLMD 134
FTF+++ +C+ + + V+ Y K G M
Sbjct: 71 ETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMG 130
Query: 135 DAQRLFDSMAERNVISWSAMVAGYANC--------------------------------G 162
A+ FD M R+ +SW+A+++GY C G
Sbjct: 131 CARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSG 190
Query: 163 NMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQ 222
+M +A+ +D MT K +TW MI GY ++ A+K+FD + E + W M Y Q
Sbjct: 191 DMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQ 250
Query: 223 NGYAKAAIEMYKVMR-QENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNY 281
N + I +++ M+ ++ +V ++ + A + G + + V D+
Sbjct: 251 NKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVK 310
Query: 282 VSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEG 341
V A++ M+SKCG ++ A R F + K V S+++MI +A +G ++ ALD+F+ M E
Sbjct: 311 VCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE 370
Query: 342 IEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKA 401
+P+++T + V+TAC+HGGLVE+G K F +M R G+ EH CMVDLLGR+G L++A
Sbjct: 371 -KPDEITMLAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLGRAGSLKEA 428
Query: 402 HSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASM 461
LI + + + L AC + + E E + +EL P+ GN LL N+YA+
Sbjct: 429 EDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAAD 488
Query: 462 GKWKDSEIVKMMISETEKKKSPGCSWI 488
+W D +VK ++ + + KK GCS I
Sbjct: 489 KRWDDFGMVKNVMRKNQAKKEVGCSLI 515
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,975,015
Number of Sequences: 539616
Number of extensions: 6874308
Number of successful extensions: 21172
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 14969
Number of HSP's gapped (non-prelim): 2039
length of query: 490
length of database: 191,569,459
effective HSP length: 122
effective length of query: 368
effective length of database: 125,736,307
effective search space: 46270960976
effective search space used: 46270960976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)