Query 011249
Match_columns 490
No_of_seqs 575 out of 2773
Neff 11.5
Searched_HMMs 46136
Date Thu Mar 28 23:15:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.4E-72 3.1E-77 577.6 51.9 480 2-490 189-733 (857)
2 PLN03081 pentatricopeptide (PP 100.0 9.2E-69 2E-73 537.0 47.3 442 31-490 85-570 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 5.6E-65 1.2E-69 521.6 51.8 468 3-482 89-624 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.1E-60 2.4E-65 481.2 51.1 466 9-484 382-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.7E-57 5.8E-62 456.7 47.6 431 31-483 368-847 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.2E-56 4.8E-61 447.7 40.0 454 2-484 125-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.8E-31 1E-35 277.0 50.1 459 7-479 373-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6E-31 1.3E-35 276.2 50.2 431 37-475 433-898 (899)
9 PRK11447 cellulose synthase su 100.0 1.3E-24 2.8E-29 229.2 46.3 460 5-477 120-700 (1157)
10 PRK11447 cellulose synthase su 99.9 4.8E-23 1E-27 217.4 49.7 454 9-478 40-667 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 6.6E-25 1.4E-29 197.8 30.1 387 65-474 113-516 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 1.1E-23 2.3E-28 190.1 29.2 351 123-480 122-488 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 2.8E-21 6.2E-26 191.7 42.7 386 71-477 130-571 (615)
14 PRK09782 bacteriophage N4 rece 99.9 2.7E-20 5.9E-25 188.2 49.4 450 9-479 56-708 (987)
15 PRK11788 tetratricopeptide rep 99.9 6.4E-22 1.4E-26 186.7 30.0 297 156-484 43-354 (389)
16 PRK09782 bacteriophage N4 rece 99.9 7.4E-20 1.6E-24 185.1 45.9 455 8-480 119-743 (987)
17 PRK15174 Vi polysaccharide exp 99.9 1.3E-20 2.8E-25 186.4 36.4 317 126-448 51-386 (656)
18 PRK15174 Vi polysaccharide exp 99.9 2.7E-20 5.8E-25 184.2 36.7 348 127-480 15-384 (656)
19 PRK11788 tetratricopeptide rep 99.9 4.9E-21 1.1E-25 180.7 29.4 301 44-383 44-354 (389)
20 PRK10049 pgaA outer membrane p 99.9 1.1E-19 2.5E-24 183.6 38.0 393 37-449 17-462 (765)
21 PRK10049 pgaA outer membrane p 99.9 6.3E-19 1.4E-23 178.2 42.4 391 70-479 17-458 (765)
22 KOG2002 TPR-containing nuclear 99.9 5.7E-20 1.2E-24 174.6 32.1 443 14-479 253-747 (1018)
23 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-18 2.8E-23 172.9 39.7 387 37-449 129-577 (615)
24 PRK14574 hmsH outer membrane p 99.9 3.1E-17 6.7E-22 162.9 43.9 417 9-449 46-519 (822)
25 PRK14574 hmsH outer membrane p 99.9 3.4E-17 7.4E-22 162.6 42.6 424 39-479 38-515 (822)
26 KOG2003 TPR repeat-containing 99.8 3E-18 6.5E-23 149.8 28.2 412 37-463 203-709 (840)
27 KOG2002 TPR-containing nuclear 99.8 1.3E-16 2.8E-21 152.2 34.7 442 11-480 284-801 (1018)
28 KOG0495 HAT repeat protein [RN 99.8 2.1E-14 4.5E-19 131.6 40.0 434 45-489 416-890 (913)
29 PF13429 TPR_15: Tetratricopep 99.8 1.4E-18 3.1E-23 155.3 11.7 258 215-476 13-276 (280)
30 KOG2076 RNA polymerase III tra 99.8 1.7E-15 3.7E-20 143.7 31.5 336 151-488 142-523 (895)
31 KOG1915 Cell cycle control pro 99.7 1.4E-13 3E-18 121.6 37.3 438 11-476 87-584 (677)
32 KOG4422 Uncharacterized conser 99.7 1.4E-13 3.1E-18 120.0 36.6 405 69-482 117-595 (625)
33 KOG0547 Translocase of outer m 99.7 6E-15 1.3E-19 130.6 28.5 384 71-475 118-564 (606)
34 KOG2003 TPR repeat-containing 99.7 1.1E-15 2.3E-20 134.0 23.5 394 70-479 200-691 (840)
35 KOG0495 HAT repeat protein [RN 99.7 1.2E-12 2.6E-17 120.2 40.1 359 123-489 412-792 (913)
36 KOG1155 Anaphase-promoting com 99.7 2.2E-13 4.7E-18 120.1 32.8 392 72-476 82-494 (559)
37 PRK10747 putative protoheme IX 99.7 3.2E-14 6.9E-19 133.1 28.8 214 254-475 162-388 (398)
38 KOG2076 RNA polymerase III tra 99.7 3.8E-13 8.2E-18 128.0 35.8 313 4-337 146-509 (895)
39 KOG1126 DNA-binding cell divis 99.7 7.4E-15 1.6E-19 135.2 22.5 277 194-479 334-622 (638)
40 KOG1915 Cell cycle control pro 99.7 1.8E-12 3.9E-17 114.7 35.6 424 31-479 71-538 (677)
41 PRK10747 putative protoheme IX 99.7 1.9E-13 4E-18 127.9 31.6 276 161-443 97-390 (398)
42 KOG1126 DNA-binding cell divis 99.7 7.4E-15 1.6E-19 135.2 21.2 277 163-449 334-626 (638)
43 TIGR00540 hemY_coli hemY prote 99.7 2.5E-13 5.4E-18 127.8 30.4 116 159-275 95-217 (409)
44 KOG1173 Anaphase-promoting com 99.7 1.3E-12 2.8E-17 118.2 32.9 447 12-477 31-518 (611)
45 TIGR00540 hemY_coli hemY prote 99.6 6.8E-13 1.5E-17 124.9 31.3 280 191-474 96-396 (409)
46 PF13429 TPR_15: Tetratricopep 99.6 1.1E-15 2.4E-20 136.7 11.9 251 184-442 13-276 (280)
47 KOG1155 Anaphase-promoting com 99.6 6.6E-12 1.4E-16 111.0 31.8 155 247-406 332-490 (559)
48 COG2956 Predicted N-acetylgluc 99.6 1.3E-12 2.8E-17 110.1 25.5 260 161-424 48-325 (389)
49 COG2956 Predicted N-acetylgluc 99.6 6E-12 1.3E-16 106.2 27.3 277 127-409 45-345 (389)
50 COG3071 HemY Uncharacterized e 99.6 4.4E-11 9.5E-16 104.2 30.4 275 161-442 97-389 (400)
51 COG3071 HemY Uncharacterized e 99.6 2.3E-11 4.9E-16 105.9 28.4 279 191-477 96-390 (400)
52 KOG2376 Signal recognition par 99.5 3.3E-10 7.2E-15 103.4 36.7 411 39-474 16-517 (652)
53 KOG0547 Translocase of outer m 99.5 3.4E-11 7.3E-16 107.3 28.9 377 37-445 117-568 (606)
54 KOG4422 Uncharacterized conser 99.5 4.3E-11 9.4E-16 104.8 29.0 321 69-409 208-588 (625)
55 TIGR02521 type_IV_pilW type IV 99.5 4.6E-12 1E-16 110.5 21.9 198 279-477 30-232 (234)
56 KOG4162 Predicted calmodulin-b 99.5 4.4E-10 9.5E-15 105.8 33.3 362 122-487 328-792 (799)
57 KOG1129 TPR repeat-containing 99.5 1.7E-12 3.6E-17 109.6 14.8 228 214-478 227-459 (478)
58 PRK12370 invasion protein regu 99.5 8.7E-11 1.9E-15 115.0 27.8 260 208-478 254-536 (553)
59 KOG2047 mRNA splicing factor [ 99.5 3.2E-09 6.8E-14 98.1 35.3 111 31-145 136-276 (835)
60 KOG1840 Kinesin light chain [C 99.4 2.3E-11 5E-16 113.5 21.7 231 246-476 200-478 (508)
61 KOG1173 Anaphase-promoting com 99.4 7.7E-10 1.7E-14 100.6 30.4 279 178-460 243-535 (611)
62 KOG1174 Anaphase-promoting com 99.4 8E-09 1.7E-13 90.5 35.4 272 178-455 231-512 (564)
63 TIGR02521 type_IV_pilW type IV 99.4 5.5E-11 1.2E-15 103.7 23.0 199 210-443 31-232 (234)
64 KOG2047 mRNA splicing factor [ 99.4 6.3E-09 1.4E-13 96.2 36.0 452 7-471 179-717 (835)
65 KOG1129 TPR repeat-containing 99.4 7.6E-12 1.6E-16 105.7 16.0 196 279-478 222-425 (478)
66 KOG1174 Anaphase-promoting com 99.4 4.7E-09 1E-13 91.9 32.9 394 79-480 54-503 (564)
67 KOG4318 Bicoid mRNA stability 99.4 9.2E-10 2E-14 105.1 28.7 442 20-485 13-601 (1088)
68 PRK12370 invasion protein regu 99.4 6.4E-11 1.4E-15 115.9 21.6 211 259-477 275-502 (553)
69 PRK11189 lipoprotein NlpI; Pro 99.4 4.5E-10 9.7E-15 100.7 24.5 232 224-463 40-286 (296)
70 KOG4162 Predicted calmodulin-b 99.4 5E-09 1.1E-13 99.0 31.6 399 31-449 321-789 (799)
71 PRK11189 lipoprotein NlpI; Pro 99.4 1.3E-10 2.8E-15 104.2 20.1 215 258-479 39-267 (296)
72 KOG4318 Bicoid mRNA stability 99.3 3.3E-10 7.2E-15 108.1 22.4 267 89-396 11-285 (1088)
73 COG3063 PilF Tfp pilus assembl 99.3 1.4E-10 3.1E-15 93.6 16.2 190 283-474 38-233 (250)
74 PF12569 NARP1: NMDA receptor- 99.3 3.2E-09 6.9E-14 100.6 26.4 285 187-477 12-334 (517)
75 KOG1840 Kinesin light chain [C 99.3 3.3E-09 7.1E-14 99.3 26.0 231 212-442 201-478 (508)
76 PF12569 NARP1: NMDA receptor- 99.3 1.6E-09 3.5E-14 102.6 24.0 258 216-479 10-293 (517)
77 PF13041 PPR_2: PPR repeat fam 99.3 1.1E-11 2.5E-16 77.7 5.8 50 65-115 1-50 (50)
78 KOG1156 N-terminal acetyltrans 99.3 2E-07 4.4E-12 86.7 35.3 418 37-475 43-509 (700)
79 KOG3785 Uncharacterized conser 99.3 1.2E-07 2.7E-12 81.6 31.5 193 249-446 289-493 (557)
80 COG3063 PilF Tfp pilus assembl 99.3 4.1E-09 8.8E-14 85.3 21.3 195 251-448 41-241 (250)
81 PF04733 Coatomer_E: Coatomer 99.3 8.6E-10 1.9E-14 97.3 19.1 251 188-449 10-271 (290)
82 KOG0548 Molecular co-chaperone 99.3 1.2E-09 2.7E-14 98.8 20.0 338 127-478 12-456 (539)
83 KOG3785 Uncharacterized conser 99.3 2.1E-08 4.5E-13 86.3 26.1 412 45-481 32-494 (557)
84 PF13041 PPR_2: PPR repeat fam 99.2 2.9E-11 6.4E-16 75.8 6.9 50 309-358 1-50 (50)
85 KOG0548 Molecular co-chaperone 99.2 5.1E-08 1.1E-12 88.6 29.7 403 42-473 9-485 (539)
86 KOG1156 N-terminal acetyltrans 99.2 7.1E-08 1.5E-12 89.6 31.1 384 71-479 11-470 (700)
87 KOG0624 dsRNA-activated protei 99.2 9.7E-09 2.1E-13 87.9 23.7 298 151-454 41-381 (504)
88 KOG4340 Uncharacterized conser 99.2 5.5E-08 1.2E-12 81.8 27.2 401 42-477 17-443 (459)
89 KOG2376 Signal recognition par 99.2 1.3E-07 2.8E-12 87.0 29.8 380 76-479 20-489 (652)
90 PF04733 Coatomer_E: Coatomer 99.2 7.8E-10 1.7E-14 97.6 13.8 252 218-488 9-272 (290)
91 KOG3616 Selective LIM binding 99.2 6.8E-08 1.5E-12 90.9 26.8 191 254-471 741-931 (1636)
92 PRK04841 transcriptional regul 99.1 6.4E-07 1.4E-11 94.5 36.1 353 126-478 350-761 (903)
93 cd05804 StaR_like StaR_like; a 99.1 2.2E-07 4.8E-12 86.7 29.0 194 284-477 118-336 (355)
94 KOG1125 TPR repeat-containing 99.1 5.7E-09 1.2E-13 95.5 16.8 217 255-477 295-527 (579)
95 cd05804 StaR_like StaR_like; a 99.1 4.2E-07 9.1E-12 84.8 29.5 290 150-444 8-337 (355)
96 PRK10370 formate-dependent nit 99.0 2.1E-08 4.5E-13 83.7 16.7 150 319-482 24-178 (198)
97 KOG3617 WD40 and TPR repeat-co 99.0 4E-06 8.6E-11 80.4 32.9 308 31-372 755-1171(1416)
98 KOG0624 dsRNA-activated protei 99.0 4.6E-07 9.9E-12 77.9 24.2 281 125-409 46-368 (504)
99 KOG3616 Selective LIM binding 99.0 1E-06 2.2E-11 83.2 28.1 188 155-367 739-929 (1636)
100 TIGR03302 OM_YfiO outer membra 99.0 4.8E-08 1.1E-12 85.1 17.8 182 278-478 31-233 (235)
101 KOG0985 Vesicle coat protein c 99.0 2.7E-05 5.8E-10 76.6 37.1 144 310-474 1103-1246(1666)
102 PRK04841 transcriptional regul 99.0 3.9E-06 8.5E-11 88.7 34.7 319 125-445 382-762 (903)
103 KOG3617 WD40 and TPR repeat-co 99.0 3.9E-06 8.4E-11 80.5 30.2 240 37-307 728-994 (1416)
104 KOG4340 Uncharacterized conser 99.0 3.6E-07 7.8E-12 77.0 20.7 302 151-471 13-333 (459)
105 PRK15359 type III secretion sy 99.0 2.3E-08 5.1E-13 78.9 13.1 122 332-459 14-137 (144)
106 KOG0985 Vesicle coat protein c 98.9 2.5E-06 5.4E-11 83.4 28.6 239 209-473 1103-1366(1666)
107 KOG1070 rRNA processing protei 98.9 1.7E-07 3.7E-12 94.3 19.9 195 280-478 1458-1664(1710)
108 PRK15359 type III secretion sy 98.9 3.8E-08 8.2E-13 77.7 12.3 108 367-479 14-123 (144)
109 KOG1914 mRNA cleavage and poly 98.9 1.6E-05 3.5E-10 72.9 30.1 72 19-97 9-82 (656)
110 KOG1125 TPR repeat-containing 98.9 2E-07 4.4E-12 85.6 18.3 250 218-471 293-565 (579)
111 KOG1127 TPR repeat-containing 98.9 3.5E-06 7.7E-11 82.4 27.2 421 31-474 490-993 (1238)
112 PLN02789 farnesyltranstransfer 98.9 1.5E-06 3.2E-11 78.1 22.7 176 296-475 88-300 (320)
113 COG5010 TadD Flp pilus assembl 98.8 5.1E-07 1.1E-11 75.0 17.2 155 315-472 70-226 (257)
114 KOG1127 TPR repeat-containing 98.8 9.8E-07 2.1E-11 86.1 20.7 156 149-306 493-656 (1238)
115 PRK15179 Vi polysaccharide bio 98.8 6.3E-07 1.4E-11 88.6 19.6 141 310-454 85-228 (694)
116 KOG3081 Vesicle coat complex C 98.8 8E-06 1.7E-10 68.1 22.6 175 267-448 95-276 (299)
117 COG4783 Putative Zn-dependent 98.8 8.9E-06 1.9E-10 73.8 24.4 232 74-340 208-454 (484)
118 KOG1128 Uncharacterized conser 98.7 6.5E-07 1.4E-11 84.6 17.1 213 250-480 403-619 (777)
119 PLN02789 farnesyltranstransfer 98.7 2.1E-05 4.5E-10 70.7 25.5 234 213-451 40-310 (320)
120 COG5010 TadD Flp pilus assembl 98.7 8.8E-07 1.9E-11 73.7 15.2 136 342-479 62-199 (257)
121 PRK10370 formate-dependent nit 98.7 2.1E-06 4.6E-11 71.7 17.8 154 287-451 23-181 (198)
122 PRK15179 Vi polysaccharide bio 98.7 3E-06 6.5E-11 83.9 21.2 142 276-421 82-229 (694)
123 TIGR03302 OM_YfiO outer membra 98.7 1.5E-06 3.2E-11 75.7 17.3 182 243-446 31-235 (235)
124 KOG1128 Uncharacterized conser 98.7 2.2E-06 4.7E-11 81.2 19.0 188 276-478 394-583 (777)
125 KOG1070 rRNA processing protei 98.7 6.1E-06 1.3E-10 83.6 22.9 219 146-365 1455-1690(1710)
126 TIGR02552 LcrH_SycD type III s 98.7 2.3E-07 5E-12 72.9 10.9 90 387-476 22-113 (135)
127 PRK14720 transcript cleavage f 98.7 7.4E-06 1.6E-10 82.1 23.5 238 178-466 30-273 (906)
128 PRK15363 pathogenicity island 98.7 7.2E-07 1.6E-11 69.1 13.0 98 381-478 34-133 (157)
129 COG4783 Putative Zn-dependent 98.7 1.4E-05 3.1E-10 72.5 22.8 140 317-478 312-455 (484)
130 KOG3081 Vesicle coat complex C 98.6 2.4E-05 5.3E-10 65.3 20.9 243 158-409 18-269 (299)
131 KOG3060 Uncharacterized conser 98.6 2.9E-06 6.2E-11 70.1 15.2 196 257-455 24-232 (289)
132 PRK14720 transcript cleavage f 98.5 0.0001 2.3E-09 74.1 26.9 166 147-340 30-198 (906)
133 KOG3060 Uncharacterized conser 98.5 4E-05 8.6E-10 63.5 19.3 197 223-424 25-232 (289)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.4E-06 5.1E-11 78.3 13.4 124 347-475 170-295 (395)
135 KOG2053 Mitochondrial inherita 98.5 0.0016 3.5E-08 63.9 36.8 66 417-482 439-507 (932)
136 KOG1914 mRNA cleavage and poly 98.5 0.001 2.3E-08 61.5 31.0 154 312-468 367-530 (656)
137 TIGR02552 LcrH_SycD type III s 98.5 4.1E-06 9E-11 65.7 12.8 115 333-451 5-122 (135)
138 PF12854 PPR_1: PPR repeat 98.5 2.2E-07 4.7E-12 52.1 3.5 32 377-408 2-33 (34)
139 PF12854 PPR_1: PPR repeat 98.4 4.8E-07 1E-11 50.7 4.0 34 340-373 1-34 (34)
140 PF07079 DUF1347: Protein of u 98.4 0.0018 3.8E-08 58.8 31.8 444 5-476 14-523 (549)
141 KOG2053 Mitochondrial inherita 98.3 0.0039 8.5E-08 61.4 33.9 399 45-470 53-563 (932)
142 COG4235 Cytochrome c biogenesi 98.3 8.1E-06 1.8E-10 69.9 11.7 112 377-488 151-267 (287)
143 cd00189 TPR Tetratricopeptide 98.3 4.8E-06 1E-10 60.7 9.3 95 384-478 2-98 (100)
144 COG3898 Uncharacterized membra 98.3 0.002 4.4E-08 57.2 27.7 241 222-477 132-392 (531)
145 TIGR02795 tol_pal_ybgF tol-pal 98.3 9.9E-06 2.1E-10 61.9 10.8 91 387-477 7-105 (119)
146 PF13414 TPR_11: TPR repeat; P 98.3 1.3E-06 2.9E-11 59.2 5.2 66 413-478 2-68 (69)
147 KOG0550 Molecular chaperone (D 98.3 1.8E-05 3.8E-10 70.2 13.1 276 185-487 55-360 (486)
148 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3E-05 6.6E-10 71.1 14.9 124 282-409 171-295 (395)
149 PF09976 TPR_21: Tetratricopep 98.3 2.4E-05 5.3E-10 62.0 12.6 84 389-473 55-143 (145)
150 PLN03088 SGT1, suppressor of 98.3 3.7E-06 8E-11 77.4 8.6 108 352-461 8-117 (356)
151 TIGR00756 PPR pentatricopeptid 98.3 1.9E-06 4.1E-11 49.2 4.3 35 69-103 1-35 (35)
152 PF12895 Apc3: Anaphase-promot 98.3 8.1E-07 1.8E-11 62.9 3.2 78 395-473 2-83 (84)
153 PF09976 TPR_21: Tetratricopep 98.2 8.5E-05 1.8E-09 58.9 14.9 126 313-441 14-145 (145)
154 PF13432 TPR_16: Tetratricopep 98.2 2.4E-06 5.2E-11 57.1 5.0 60 420-479 3-62 (65)
155 PF14938 SNAP: Soluble NSF att 98.2 0.00046 9.9E-09 61.6 20.8 214 70-317 37-274 (282)
156 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.3E-05 7.3E-10 59.0 11.4 106 348-453 4-115 (119)
157 KOG0553 TPR repeat-containing 98.2 1.5E-05 3.4E-10 67.8 9.8 107 356-464 91-199 (304)
158 PF13812 PPR_3: Pentatricopept 98.2 3.3E-06 7.2E-11 47.8 4.0 33 69-101 2-34 (34)
159 PLN03088 SGT1, suppressor of 98.2 3.6E-05 7.8E-10 70.9 12.7 101 317-421 8-110 (356)
160 KOG2280 Vacuolar assembly/sort 98.1 0.011 2.4E-07 57.2 27.4 353 78-471 399-793 (829)
161 KOG0553 TPR repeat-containing 98.1 1.1E-05 2.4E-10 68.7 7.1 91 390-480 89-181 (304)
162 TIGR00756 PPR pentatricopeptid 98.1 8.4E-06 1.8E-10 46.4 4.3 34 212-245 2-35 (35)
163 PF14559 TPR_19: Tetratricopep 98.1 6.7E-06 1.5E-10 55.5 4.4 55 425-479 2-56 (68)
164 KOG2041 WD40 repeat protein [G 98.0 0.014 3E-07 56.1 26.8 69 131-204 748-821 (1189)
165 PF13812 PPR_3: Pentatricopept 98.0 9.8E-06 2.1E-10 45.8 4.2 33 211-243 2-34 (34)
166 PRK15331 chaperone protein Sic 98.0 4.3E-05 9.3E-10 59.7 9.0 89 388-476 43-133 (165)
167 PRK02603 photosystem I assembl 98.0 0.00019 4.2E-09 58.8 13.1 131 310-463 34-166 (172)
168 PRK02603 photosystem I assembl 98.0 5.4E-05 1.2E-09 62.1 9.8 95 384-478 37-150 (172)
169 PF13432 TPR_16: Tetratricopep 98.0 1.9E-05 4.1E-10 52.7 5.9 61 388-448 3-65 (65)
170 PF14938 SNAP: Soluble NSF att 98.0 0.00031 6.8E-09 62.7 15.4 149 326-474 89-263 (282)
171 cd00189 TPR Tetratricopeptide 98.0 7E-05 1.5E-09 54.3 9.4 90 354-445 8-99 (100)
172 PF13371 TPR_9: Tetratricopept 98.0 2.3E-05 4.9E-10 53.8 5.7 58 422-479 3-60 (73)
173 COG4700 Uncharacterized protei 97.9 0.0018 4E-08 51.3 16.4 130 242-373 86-220 (251)
174 COG4700 Uncharacterized protei 97.9 0.0013 2.8E-08 52.1 15.1 130 342-473 85-218 (251)
175 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.017 3.6E-07 52.7 29.3 135 310-447 396-535 (660)
176 CHL00033 ycf3 photosystem I as 97.9 7.3E-05 1.6E-09 61.1 8.8 92 382-473 35-138 (168)
177 PRK10153 DNA-binding transcrip 97.9 0.00023 5E-09 68.6 13.4 139 309-449 335-488 (517)
178 PRK10153 DNA-binding transcrip 97.9 0.00056 1.2E-08 66.0 15.8 141 342-487 333-491 (517)
179 PF12895 Apc3: Anaphase-promot 97.9 4.5E-05 9.6E-10 53.9 6.4 80 360-439 3-83 (84)
180 PF14559 TPR_19: Tetratricopep 97.9 2.4E-05 5.3E-10 52.7 4.7 62 394-455 3-66 (68)
181 PF01535 PPR: PPR repeat; Int 97.8 2.3E-05 5.1E-10 43.1 3.5 31 69-99 1-31 (31)
182 PF05843 Suf: Suppressor of fo 97.8 0.00075 1.6E-08 60.0 14.5 134 312-448 2-141 (280)
183 PF13414 TPR_11: TPR repeat; P 97.8 6.1E-05 1.3E-09 50.9 6.0 65 381-445 2-69 (69)
184 PF04840 Vps16_C: Vps16, C-ter 97.8 0.026 5.6E-07 50.9 25.8 20 126-145 9-28 (319)
185 PF12688 TPR_5: Tetratrico pep 97.7 0.0012 2.7E-08 49.5 12.2 107 215-321 6-116 (120)
186 PRK15363 pathogenicity island 97.7 0.00087 1.9E-08 52.3 11.5 88 215-304 40-127 (157)
187 PRK10866 outer membrane biogen 97.7 0.0081 1.8E-07 52.0 18.8 173 286-475 38-239 (243)
188 KOG2796 Uncharacterized conser 97.7 0.0045 9.8E-08 52.0 16.0 135 212-348 179-321 (366)
189 PRK10866 outer membrane biogen 97.7 0.016 3.4E-07 50.2 20.2 67 209-275 31-99 (243)
190 KOG1130 Predicted G-alpha GTPa 97.7 0.00035 7.6E-09 62.2 9.9 252 77-339 26-343 (639)
191 PRK10803 tol-pal system protei 97.7 0.00035 7.6E-09 60.9 9.9 91 357-447 154-250 (263)
192 KOG1130 Predicted G-alpha GTPa 97.7 0.00037 7.9E-09 62.1 9.8 129 348-476 197-343 (639)
193 PF12688 TPR_5: Tetratrico pep 97.7 0.00047 1E-08 51.8 9.0 56 416-471 40-98 (120)
194 CHL00033 ycf3 photosystem I as 97.7 0.0014 3.1E-08 53.4 12.8 81 210-291 35-117 (168)
195 KOG0550 Molecular chaperone (D 97.7 0.0018 3.9E-08 57.9 13.7 273 151-446 52-353 (486)
196 PF01535 PPR: PPR repeat; Int 97.7 6.9E-05 1.5E-09 41.1 3.4 30 313-342 2-31 (31)
197 KOG2796 Uncharacterized conser 97.6 0.0024 5.2E-08 53.6 13.4 136 312-448 178-320 (366)
198 PF13431 TPR_17: Tetratricopep 97.6 2.9E-05 6.3E-10 43.4 1.6 34 436-469 1-34 (34)
199 PF13281 DUF4071: Domain of un 97.6 0.018 3.9E-07 52.4 19.3 122 324-448 195-339 (374)
200 PF05843 Suf: Suppressor of fo 97.6 0.0017 3.8E-08 57.7 13.0 142 211-356 2-150 (280)
201 PF10037 MRP-S27: Mitochondria 97.6 0.0019 4E-08 59.9 13.2 115 242-356 63-183 (429)
202 PF13428 TPR_14: Tetratricopep 97.5 0.00015 3.2E-09 43.6 4.1 42 415-456 2-43 (44)
203 KOG1258 mRNA processing protei 97.5 0.085 1.8E-06 50.2 28.9 179 279-462 296-489 (577)
204 PF13371 TPR_9: Tetratricopept 97.5 0.00037 8E-09 47.6 6.5 66 389-454 2-69 (73)
205 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00033 7.1E-09 64.2 7.7 62 382-443 75-141 (453)
206 COG3898 Uncharacterized membra 97.5 0.066 1.4E-06 48.0 28.5 299 52-374 69-391 (531)
207 KOG0543 FKBP-type peptidyl-pro 97.5 0.0017 3.6E-08 58.3 10.9 96 382-477 257-355 (397)
208 PRK10803 tol-pal system protei 97.4 0.0034 7.4E-08 54.8 12.6 94 385-478 146-247 (263)
209 PF10037 MRP-S27: Mitochondria 97.4 0.0024 5.1E-08 59.3 11.9 120 275-395 61-186 (429)
210 PF08579 RPM2: Mitochondrial r 97.4 0.0031 6.8E-08 45.6 9.8 80 314-394 28-116 (120)
211 PF08579 RPM2: Mitochondrial r 97.4 0.0028 6.1E-08 45.8 9.5 80 213-292 28-116 (120)
212 KOG1538 Uncharacterized conser 97.4 0.017 3.7E-07 55.0 17.2 239 182-442 559-845 (1081)
213 PF13424 TPR_12: Tetratricopep 97.2 0.00036 7.8E-09 48.4 3.5 62 415-476 6-74 (78)
214 KOG0543 FKBP-type peptidyl-pro 97.2 0.0015 3.3E-08 58.5 7.6 67 414-480 257-323 (397)
215 PF06239 ECSIT: Evolutionarily 97.2 0.0076 1.6E-07 49.5 10.8 97 300-397 34-153 (228)
216 PF13525 YfiO: Outer membrane 97.2 0.12 2.6E-06 43.6 19.5 64 212-275 7-72 (203)
217 PF04840 Vps16_C: Vps16, C-ter 97.1 0.19 4.2E-06 45.4 28.7 104 214-333 181-284 (319)
218 PF13525 YfiO: Outer membrane 97.1 0.042 9E-07 46.3 15.4 56 184-239 10-71 (203)
219 COG4235 Cytochrome c biogenesi 97.1 0.023 5E-07 49.2 13.3 103 345-449 155-262 (287)
220 PF13512 TPR_18: Tetratricopep 97.0 0.013 2.7E-07 45.1 10.3 90 388-477 16-128 (142)
221 PF13424 TPR_12: Tetratricopep 97.0 0.0013 2.8E-08 45.6 4.6 61 383-443 6-75 (78)
222 KOG1538 Uncharacterized conser 97.0 0.26 5.5E-06 47.4 20.4 98 300-409 736-844 (1081)
223 PF13281 DUF4071: Domain of un 97.0 0.11 2.4E-06 47.4 17.7 78 178-255 140-227 (374)
224 PF10300 DUF3808: Protein of u 96.9 0.05 1.1E-06 52.3 16.0 163 314-479 191-378 (468)
225 PRK15331 chaperone protein Sic 96.9 0.044 9.6E-07 43.2 12.7 89 355-446 46-136 (165)
226 PF03704 BTAD: Bacterial trans 96.9 0.0027 5.8E-08 50.4 6.2 60 416-475 64-123 (146)
227 PF06239 ECSIT: Evolutionarily 96.9 0.014 3.1E-07 48.0 10.1 87 208-294 45-152 (228)
228 KOG1585 Protein required for f 96.9 0.1 2.3E-06 43.7 14.9 53 417-470 193-249 (308)
229 KOG2280 Vacuolar assembly/sort 96.8 0.58 1.3E-05 46.0 23.8 303 152-475 441-771 (829)
230 PRK11906 transcriptional regul 96.7 0.024 5.2E-07 52.5 11.4 145 326-473 273-432 (458)
231 COG3118 Thioredoxin domain-con 96.7 0.12 2.6E-06 44.8 14.6 119 356-477 144-265 (304)
232 KOG2041 WD40 repeat protein [G 96.6 0.77 1.7E-05 44.8 23.6 40 46-92 745-784 (1189)
233 COG1729 Uncharacterized protei 96.5 0.027 5.9E-07 48.2 9.7 89 359-449 154-250 (262)
234 PF12921 ATP13: Mitochondrial 96.5 0.038 8.2E-07 42.1 9.7 53 341-393 47-99 (126)
235 KOG4555 TPR repeat-containing 96.5 0.028 6E-07 41.9 8.3 51 356-408 53-103 (175)
236 COG0457 NrfG FOG: TPR repeat [ 96.5 0.46 1E-05 40.8 25.5 219 224-446 37-268 (291)
237 COG1729 Uncharacterized protei 96.5 0.022 4.8E-07 48.7 8.9 94 384-478 144-245 (262)
238 PF03704 BTAD: Bacterial trans 96.5 0.05 1.1E-06 43.1 10.7 71 212-283 64-139 (146)
239 KOG1258 mRNA processing protei 96.4 0.92 2E-05 43.5 25.4 108 132-239 60-180 (577)
240 KOG2610 Uncharacterized conser 96.4 0.12 2.5E-06 45.5 12.8 113 324-439 116-234 (491)
241 KOG1941 Acetylcholine receptor 96.4 0.4 8.8E-06 42.8 16.0 122 251-372 128-272 (518)
242 PF08631 SPO22: Meiosis protei 96.4 0.67 1.5E-05 41.3 21.7 99 247-346 86-192 (278)
243 PF09205 DUF1955: Domain of un 96.4 0.2 4.3E-06 37.6 12.1 141 321-480 12-152 (161)
244 COG0457 NrfG FOG: TPR repeat [ 96.4 0.56 1.2E-05 40.2 25.0 215 260-476 38-264 (291)
245 COG5107 RNA14 Pre-mRNA 3'-end 96.3 0.85 1.8E-05 42.1 27.1 127 348-476 399-530 (660)
246 KOG1941 Acetylcholine receptor 96.3 0.065 1.4E-06 47.6 10.8 223 220-442 16-274 (518)
247 KOG2610 Uncharacterized conser 96.2 0.053 1.2E-06 47.5 9.6 116 357-474 114-235 (491)
248 PRK11906 transcriptional regul 96.2 0.3 6.4E-06 45.6 14.8 143 295-442 273-435 (458)
249 PF07719 TPR_2: Tetratricopept 96.2 0.015 3.2E-07 32.4 4.4 32 416-447 3-34 (34)
250 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.036 7.7E-07 51.3 9.0 62 345-409 74-139 (453)
251 PF00515 TPR_1: Tetratricopept 96.1 0.01 2.3E-07 33.1 3.7 32 415-446 2-33 (34)
252 COG4105 ComL DNA uptake lipopr 96.1 0.79 1.7E-05 39.2 19.7 55 420-474 173-230 (254)
253 COG3118 Thioredoxin domain-con 96.1 0.77 1.7E-05 40.0 15.9 149 320-470 143-294 (304)
254 PF04053 Coatomer_WDAD: Coatom 96.0 0.39 8.4E-06 45.6 15.6 155 127-306 271-428 (443)
255 KOG4234 TPR repeat-containing 96.0 0.02 4.3E-07 46.2 5.9 104 354-459 103-213 (271)
256 PRK11619 lytic murein transgly 96.0 2 4.3E-05 43.3 31.8 315 127-455 43-383 (644)
257 PF09205 DUF1955: Domain of un 96.0 0.16 3.4E-06 38.2 9.9 135 127-276 12-151 (161)
258 PF04184 ST7: ST7 protein; In 95.9 0.66 1.4E-05 43.5 15.9 103 346-448 259-380 (539)
259 PF02259 FAT: FAT domain; Int 95.8 1.6 3.4E-05 40.6 20.8 149 310-461 145-305 (352)
260 PF13512 TPR_18: Tetratricopep 95.8 0.34 7.3E-06 37.4 11.5 119 315-450 14-135 (142)
261 COG4785 NlpI Lipoprotein NlpI, 95.8 0.9 2E-05 37.6 14.3 162 310-479 98-268 (297)
262 smart00299 CLH Clathrin heavy 95.6 0.8 1.7E-05 35.8 14.4 126 314-459 10-136 (140)
263 PF04053 Coatomer_WDAD: Coatom 95.6 0.9 2E-05 43.2 16.3 161 218-409 269-429 (443)
264 PF12921 ATP13: Mitochondrial 95.6 0.19 4.2E-06 38.2 9.6 78 211-288 3-96 (126)
265 PF04184 ST7: ST7 protein; In 95.4 0.4 8.6E-06 44.9 12.5 67 387-453 264-335 (539)
266 KOG0890 Protein kinase of the 95.3 4.9 0.00011 45.5 21.8 307 153-479 1388-1733(2382)
267 PF10300 DUF3808: Protein of u 95.3 0.67 1.4E-05 44.7 14.4 109 163-272 248-374 (468)
268 KOG1585 Protein required for f 95.1 1.7 3.8E-05 36.7 15.9 196 151-369 34-250 (308)
269 KOG1920 IkappaB kinase complex 95.1 2.7 5.8E-05 44.0 18.1 159 131-308 894-1054(1265)
270 PRK09687 putative lyase; Provi 95.0 2.4 5.1E-05 37.8 27.1 19 145-163 34-52 (280)
271 COG4785 NlpI Lipoprotein NlpI, 95.0 1.2 2.6E-05 36.9 12.7 34 64-97 95-128 (297)
272 KOG1464 COP9 signalosome, subu 95.0 1.8 3.9E-05 37.1 14.3 148 80-238 39-219 (440)
273 KOG4555 TPR repeat-containing 95.0 0.19 4.1E-06 37.7 7.5 55 320-375 52-106 (175)
274 KOG2066 Vacuolar assembly/sort 95.0 4.3 9.4E-05 40.5 25.0 150 74-237 362-532 (846)
275 TIGR02561 HrpB1_HrpK type III 94.8 0.18 3.8E-06 39.0 7.2 72 394-465 22-95 (153)
276 PF13181 TPR_8: Tetratricopept 94.7 0.059 1.3E-06 29.9 3.6 31 416-446 3-33 (34)
277 PF02259 FAT: FAT domain; Int 94.7 1.7 3.7E-05 40.3 15.4 65 412-476 144-212 (352)
278 KOG3941 Intermediate in Toll s 94.6 0.54 1.2E-05 40.5 10.2 98 300-398 54-174 (406)
279 COG2909 MalT ATP-dependent tra 94.5 6.3 0.00014 40.1 19.9 193 291-487 426-657 (894)
280 PF13176 TPR_7: Tetratricopept 94.4 0.071 1.5E-06 30.1 3.4 24 417-440 2-25 (36)
281 KOG3941 Intermediate in Toll s 94.4 0.55 1.2E-05 40.5 9.8 88 208-295 65-173 (406)
282 COG4649 Uncharacterized protei 94.3 0.7 1.5E-05 36.7 9.5 117 323-442 70-195 (221)
283 COG2976 Uncharacterized protei 94.3 2.5 5.3E-05 34.6 13.1 84 156-239 97-188 (207)
284 KOG4234 TPR repeat-containing 94.3 0.58 1.3E-05 38.1 9.2 88 318-409 102-195 (271)
285 COG2976 Uncharacterized protei 94.2 1.4 2.9E-05 36.0 11.2 129 312-446 55-191 (207)
286 KOG2114 Vacuolar assembly/sort 94.1 7.2 0.00016 39.4 18.5 82 219-307 377-458 (933)
287 COG4649 Uncharacterized protei 94.1 0.9 2E-05 36.1 9.8 23 317-339 173-195 (221)
288 PF13176 TPR_7: Tetratricopept 94.1 0.069 1.5E-06 30.2 2.9 27 450-476 1-27 (36)
289 PF09613 HrpB1_HrpK: Bacterial 94.1 0.29 6.4E-06 38.5 7.2 83 383-465 8-95 (160)
290 KOG4648 Uncharacterized conser 94.0 0.21 4.7E-06 44.0 6.8 96 355-452 106-203 (536)
291 PF13428 TPR_14: Tetratricopep 93.9 0.21 4.6E-06 29.7 4.9 28 212-239 3-30 (44)
292 KOG1586 Protein required for f 93.9 3.5 7.5E-05 34.8 15.6 17 426-442 166-182 (288)
293 PF10602 RPN7: 26S proteasome 93.9 1.5 3.2E-05 36.0 11.3 97 313-409 38-140 (177)
294 PF07079 DUF1347: Protein of u 93.8 5.9 0.00013 37.0 25.4 128 127-255 16-177 (549)
295 PRK15180 Vi polysaccharide bio 93.8 0.91 2E-05 42.2 10.6 121 322-446 300-423 (831)
296 PF13170 DUF4003: Protein of u 93.7 5 0.00011 36.0 15.9 125 265-392 82-227 (297)
297 COG3629 DnrI DNA-binding trans 93.7 0.31 6.8E-06 42.6 7.4 59 384-442 155-215 (280)
298 PF09613 HrpB1_HrpK: Bacterial 93.5 3.1 6.7E-05 33.0 12.7 19 391-409 53-71 (160)
299 PF07719 TPR_2: Tetratricopept 93.4 0.088 1.9E-06 29.1 2.6 31 449-479 2-32 (34)
300 PF04097 Nic96: Nup93/Nic96; 93.3 10 0.00022 38.3 20.3 213 73-308 116-355 (613)
301 PF08631 SPO22: Meiosis protei 93.2 5.9 0.00013 35.4 23.7 120 221-340 4-150 (278)
302 PF00515 TPR_1: Tetratricopept 93.2 0.1 2.3E-06 28.9 2.6 31 449-479 2-32 (34)
303 KOG1920 IkappaB kinase complex 93.1 8.5 0.00018 40.6 17.0 25 182-206 793-819 (1265)
304 PF13174 TPR_6: Tetratricopept 93.1 0.2 4.3E-06 27.3 3.6 27 420-446 6-32 (33)
305 COG4105 ComL DNA uptake lipopr 93.0 5.4 0.00012 34.3 23.5 64 212-275 36-101 (254)
306 COG1747 Uncharacterized N-term 92.9 8.7 0.00019 36.5 21.6 89 282-374 68-159 (711)
307 KOG1550 Extracellular protein 92.8 11 0.00025 37.4 23.4 273 195-477 228-538 (552)
308 PF10602 RPN7: 26S proteasome 92.6 1.1 2.4E-05 36.7 8.7 55 183-237 40-100 (177)
309 PF00637 Clathrin: Region in C 92.6 0.012 2.7E-07 46.4 -2.6 83 251-336 13-95 (143)
310 PRK09687 putative lyase; Provi 92.5 7.5 0.00016 34.7 27.4 236 176-424 34-277 (280)
311 PF13374 TPR_10: Tetratricopep 92.5 0.27 5.9E-06 28.6 3.9 27 416-442 4-30 (42)
312 KOG4648 Uncharacterized conser 92.4 0.28 6E-06 43.4 5.1 90 389-478 104-195 (536)
313 smart00299 CLH Clathrin heavy 92.3 4.4 9.6E-05 31.6 15.3 42 215-257 12-53 (140)
314 KOG2114 Vacuolar assembly/sort 92.3 14 0.00031 37.4 27.1 54 388-442 711-764 (933)
315 PF06552 TOM20_plant: Plant sp 92.2 1.5 3.3E-05 35.3 8.6 59 413-478 68-137 (186)
316 COG3629 DnrI DNA-binding trans 92.2 1.1 2.4E-05 39.3 8.6 75 180-254 154-236 (280)
317 COG3947 Response regulator con 92.1 7.1 0.00015 34.2 13.0 60 417-476 282-341 (361)
318 PF00637 Clathrin: Region in C 92.1 0.074 1.6E-06 41.9 1.4 129 73-225 12-140 (143)
319 PF10345 Cohesin_load: Cohesin 92.1 15 0.00032 37.2 23.0 183 146-338 28-252 (608)
320 PF06552 TOM20_plant: Plant sp 92.0 0.49 1.1E-05 38.0 5.7 49 429-477 50-109 (186)
321 KOG0890 Protein kinase of the 91.5 31 0.00067 39.7 23.7 306 122-444 1388-1732(2382)
322 KOG0545 Aryl-hydrocarbon recep 91.4 1.1 2.4E-05 37.8 7.4 56 422-477 238-293 (329)
323 KOG1586 Protein required for f 91.4 8.1 0.00018 32.7 15.9 57 393-449 165-230 (288)
324 COG1747 Uncharacterized N-term 91.3 14 0.0003 35.3 20.2 159 244-409 65-232 (711)
325 TIGR02561 HrpB1_HrpK type III 91.3 2.2 4.8E-05 33.2 8.4 99 344-444 5-107 (153)
326 KOG1464 COP9 signalosome, subu 91.3 9.1 0.0002 33.1 19.0 218 215-438 70-327 (440)
327 PF11207 DUF2989: Protein of u 91.3 4.8 0.0001 33.2 10.7 76 391-468 116-198 (203)
328 PF14853 Fis1_TPR_C: Fis1 C-te 91.1 0.57 1.2E-05 29.2 4.2 35 419-453 6-40 (53)
329 PF07721 TPR_4: Tetratricopept 91.1 0.25 5.5E-06 25.4 2.3 24 449-472 2-25 (26)
330 COG2909 MalT ATP-dependent tra 90.9 21 0.00045 36.7 22.9 217 254-473 424-684 (894)
331 PF13174 TPR_6: Tetratricopept 90.9 0.25 5.5E-06 26.9 2.4 30 450-479 2-31 (33)
332 KOG0276 Vesicle coat complex C 90.7 9.8 0.00021 37.0 13.5 152 189-372 596-747 (794)
333 PF13431 TPR_17: Tetratricopep 90.7 0.34 7.4E-06 26.9 2.7 24 277-300 10-33 (34)
334 PRK10941 hypothetical protein; 90.4 1.4 3E-05 38.7 7.6 63 417-479 184-246 (269)
335 smart00028 TPR Tetratricopepti 90.3 0.66 1.4E-05 24.5 3.9 30 417-446 4-33 (34)
336 PF07035 Mic1: Colon cancer-as 90.2 8.5 0.00018 31.0 14.7 41 90-144 16-56 (167)
337 KOG1308 Hsp70-interacting prot 89.8 0.22 4.8E-06 44.1 2.2 59 420-478 154-212 (377)
338 KOG0276 Vesicle coat complex C 89.6 3.5 7.6E-05 39.8 9.8 99 128-235 648-746 (794)
339 KOG4279 Serine/threonine prote 89.2 6.9 0.00015 39.0 11.5 188 210-449 201-401 (1226)
340 PF13181 TPR_8: Tetratricopept 89.0 0.5 1.1E-05 26.0 2.6 31 449-479 2-32 (34)
341 PF13374 TPR_10: Tetratricopep 88.9 0.55 1.2E-05 27.2 2.9 29 449-477 3-31 (42)
342 COG4455 ImpE Protein of avirul 88.5 1.5 3.3E-05 36.4 5.9 73 385-457 4-81 (273)
343 PRK15180 Vi polysaccharide bio 88.0 4.3 9.3E-05 38.0 9.0 153 287-442 296-453 (831)
344 KOG2396 HAT (Half-A-TPR) repea 87.7 26 0.00057 33.4 18.5 271 134-408 268-556 (568)
345 COG5159 RPN6 26S proteasome re 87.6 19 0.0004 31.6 18.8 48 155-202 10-68 (421)
346 PRK12798 chemotaxis protein; R 87.6 24 0.00053 32.9 21.8 184 293-479 125-326 (421)
347 KOG4570 Uncharacterized conser 87.6 6.5 0.00014 34.8 9.4 95 277-375 61-164 (418)
348 PF14561 TPR_20: Tetratricopep 87.5 1.4 2.9E-05 31.3 4.6 55 411-465 19-75 (90)
349 PF04910 Tcf25: Transcriptiona 87.3 11 0.00023 35.1 11.5 57 420-476 109-167 (360)
350 KOG2063 Vacuolar assembly/sort 87.3 19 0.0004 37.5 13.8 29 211-239 505-533 (877)
351 PF09986 DUF2225: Uncharacteri 87.3 3 6.6E-05 35.3 7.3 66 416-481 120-198 (214)
352 KOG4642 Chaperone-dependent E3 87.2 2.3 5E-05 35.9 6.3 84 356-442 20-106 (284)
353 KOG2066 Vacuolar assembly/sort 87.0 37 0.0008 34.4 27.9 99 124-222 363-467 (846)
354 cd00923 Cyt_c_Oxidase_Va Cytoc 86.8 5.8 0.00012 28.2 7.0 48 226-273 23-70 (103)
355 cd00923 Cyt_c_Oxidase_Va Cytoc 86.7 4.8 0.0001 28.6 6.6 61 327-389 23-83 (103)
356 KOG4507 Uncharacterized conser 86.6 2.8 6E-05 40.3 7.1 98 357-457 618-719 (886)
357 PF02284 COX5A: Cytochrome c o 86.5 4 8.6E-05 29.3 6.2 60 329-390 28-87 (108)
358 PF02284 COX5A: Cytochrome c o 86.1 6.1 0.00013 28.4 6.9 60 228-288 28-87 (108)
359 PF07035 Mic1: Colon cancer-as 85.9 17 0.00036 29.3 14.2 101 231-337 15-115 (167)
360 PF11207 DUF2989: Protein of u 85.9 12 0.00026 31.0 9.6 74 226-300 122-198 (203)
361 PF13170 DUF4003: Protein of u 85.8 26 0.00057 31.5 19.3 158 327-487 78-255 (297)
362 KOG2471 TPR repeat-containing 85.7 17 0.00037 34.4 11.5 77 314-393 286-380 (696)
363 KOG2063 Vacuolar assembly/sort 85.4 51 0.0011 34.5 19.1 86 391-476 600-712 (877)
364 PF07721 TPR_4: Tetratricopept 85.1 1.9 4.1E-05 22.0 3.2 20 387-406 6-25 (26)
365 smart00386 HAT HAT (Half-A-TPR 84.9 2 4.3E-05 23.0 3.6 30 428-457 1-30 (33)
366 TIGR03504 FimV_Cterm FimV C-te 83.7 1.7 3.6E-05 25.8 2.9 25 453-477 4-28 (44)
367 smart00028 TPR Tetratricopepti 83.0 1.7 3.7E-05 22.7 2.9 29 449-477 2-30 (34)
368 PRK11619 lytic murein transgly 82.7 59 0.0013 33.1 37.2 336 126-469 108-497 (644)
369 TIGR02508 type_III_yscG type I 82.6 16 0.00034 26.3 9.7 59 187-248 47-105 (115)
370 PRK13800 putative oxidoreducta 82.2 76 0.0017 34.0 27.7 154 278-442 726-880 (897)
371 PF13929 mRNA_stabil: mRNA sta 82.1 36 0.00078 30.1 14.1 83 208-290 200-288 (292)
372 PF04097 Nic96: Nup93/Nic96; 81.1 66 0.0014 32.6 14.8 38 154-191 117-157 (613)
373 KOG2300 Uncharacterized conser 80.9 53 0.0012 31.4 29.0 83 52-145 70-155 (629)
374 KOG1498 26S proteasome regulat 80.3 49 0.0011 30.6 12.9 104 386-489 135-253 (439)
375 TIGR02508 type_III_yscG type I 79.6 20 0.00044 25.8 10.0 87 261-351 21-107 (115)
376 TIGR03504 FimV_Cterm FimV C-te 79.2 5.2 0.00011 23.8 3.9 27 73-99 4-30 (44)
377 PF10579 Rapsyn_N: Rapsyn N-te 79.1 3.6 7.7E-05 28.0 3.5 46 426-471 18-66 (80)
378 KOG3824 Huntingtin interacting 78.9 3.3 7.2E-05 36.3 4.2 46 426-471 128-173 (472)
379 KOG3364 Membrane protein invol 78.5 19 0.00042 27.6 7.5 73 379-451 29-108 (149)
380 PF07163 Pex26: Pex26 protein; 78.2 29 0.00064 30.4 9.5 87 217-303 90-181 (309)
381 KOG2422 Uncharacterized conser 78.1 41 0.0009 32.8 11.3 50 323-373 250-311 (665)
382 KOG1463 26S proteasome regulat 77.7 55 0.0012 29.7 18.6 86 360-445 223-318 (411)
383 COG5159 RPN6 26S proteasome re 77.0 52 0.0011 29.0 12.9 52 215-266 8-66 (421)
384 cd00280 TRFH Telomeric Repeat 76.8 40 0.00086 27.6 10.1 55 84-145 85-139 (200)
385 KOG4507 Uncharacterized conser 76.7 17 0.00037 35.4 8.4 87 393-479 618-707 (886)
386 PF13934 ELYS: Nuclear pore co 76.7 46 0.001 28.6 10.6 116 103-232 76-198 (226)
387 PF08311 Mad3_BUB1_I: Mad3/BUB 76.6 19 0.00041 27.5 7.5 42 432-473 81-124 (126)
388 PRK10941 hypothetical protein; 76.5 14 0.0003 32.6 7.6 65 387-451 186-252 (269)
389 KOG1550 Extracellular protein 75.9 90 0.0019 31.2 24.9 73 133-205 228-319 (552)
390 PRK13800 putative oxidoreducta 75.9 1.2E+02 0.0026 32.6 26.6 258 138-415 625-885 (897)
391 COG3947 Response regulator con 75.5 58 0.0013 28.9 13.4 59 384-442 281-341 (361)
392 KOG0551 Hsp90 co-chaperone CNS 75.2 19 0.00041 32.4 7.8 90 384-473 83-178 (390)
393 PF10366 Vps39_1: Vacuolar sor 75.1 23 0.00051 26.1 7.3 28 69-96 40-67 (108)
394 COG0790 FOG: TPR repeat, SEL1 74.3 65 0.0014 28.9 18.4 84 257-343 53-145 (292)
395 KOG4279 Serine/threonine prote 74.3 92 0.002 31.7 12.7 191 263-477 181-395 (1226)
396 PF08424 NRDE-2: NRDE-2, neces 74.3 71 0.0015 29.3 12.7 115 327-444 47-184 (321)
397 KOG4642 Chaperone-dependent E3 74.0 40 0.00088 28.9 9.0 118 290-409 20-144 (284)
398 KOG0376 Serine-threonine phosp 73.6 3.2 6.9E-05 38.9 3.0 102 352-456 10-114 (476)
399 COG4455 ImpE Protein of avirul 73.6 20 0.00044 30.1 7.1 128 313-449 3-140 (273)
400 PF12968 DUF3856: Domain of Un 73.0 37 0.0008 25.4 8.9 20 384-403 57-76 (144)
401 PF10579 Rapsyn_N: Rapsyn N-te 72.6 11 0.00024 25.7 4.5 17 387-403 48-64 (80)
402 cd08819 CARD_MDA5_2 Caspase ac 72.3 21 0.00046 24.9 5.9 32 162-194 50-81 (88)
403 KOG3807 Predicted membrane pro 72.1 76 0.0016 28.6 13.4 18 432-449 380-397 (556)
404 PF10366 Vps39_1: Vacuolar sor 71.9 24 0.00052 26.1 6.7 27 212-238 41-67 (108)
405 PF07163 Pex26: Pex26 protein; 71.2 54 0.0012 28.9 9.4 83 287-369 90-181 (309)
406 PF11846 DUF3366: Domain of un 71.0 21 0.00045 29.7 7.2 35 411-445 141-175 (193)
407 KOG4570 Uncharacterized conser 70.9 73 0.0016 28.6 10.2 95 312-409 65-162 (418)
408 KOG3364 Membrane protein invol 70.0 17 0.00037 27.9 5.5 69 411-479 29-102 (149)
409 PF12862 Apc5: Anaphase-promot 69.9 13 0.00028 26.6 4.9 53 425-477 9-70 (94)
410 KOG4077 Cytochrome c oxidase, 69.7 26 0.00056 26.5 6.3 59 329-389 67-125 (149)
411 COG4976 Predicted methyltransf 69.2 6.6 0.00014 33.1 3.5 64 391-454 4-69 (287)
412 KOG0991 Replication factor C, 69.1 74 0.0016 27.3 14.2 49 410-459 235-283 (333)
413 KOG4077 Cytochrome c oxidase, 69.0 32 0.0007 26.0 6.6 46 229-274 68-113 (149)
414 PF07720 TPR_3: Tetratricopept 69.0 18 0.0004 20.3 4.3 17 420-436 7-23 (36)
415 PF11846 DUF3366: Domain of un 68.8 22 0.00047 29.6 6.8 57 353-409 115-171 (193)
416 PF04190 DUF410: Protein of un 68.8 83 0.0018 27.7 14.9 159 292-477 2-170 (260)
417 PF14863 Alkyl_sulf_dimr: Alky 68.7 23 0.00049 27.7 6.3 64 399-465 58-121 (141)
418 PF00244 14-3-3: 14-3-3 protei 68.6 70 0.0015 27.7 9.9 60 214-273 5-65 (236)
419 PF10345 Cohesin_load: Cohesin 68.6 1.4E+02 0.0031 30.3 29.9 50 357-406 372-428 (608)
420 KOG0889 Histone acetyltransfer 68.4 3E+02 0.0065 34.1 20.7 20 156-175 2490-2509(3550)
421 PF14853 Fis1_TPR_C: Fis1 C-te 67.6 7.9 0.00017 24.1 2.9 30 450-479 3-32 (53)
422 KOG1308 Hsp70-interacting prot 67.5 1.8 4E-05 38.6 0.1 64 424-487 124-187 (377)
423 PF15469 Sec5: Exocyst complex 66.4 19 0.00041 29.7 5.9 28 462-489 153-180 (182)
424 PF00244 14-3-3: 14-3-3 protei 66.1 88 0.0019 27.1 10.3 47 431-477 143-198 (236)
425 PF10255 Paf67: RNA polymerase 65.7 37 0.00081 31.9 8.1 88 150-237 77-191 (404)
426 PF09477 Type_III_YscG: Bacter 65.5 51 0.0011 24.2 9.6 86 260-349 21-106 (116)
427 PF04190 DUF410: Protein of un 65.2 98 0.0021 27.3 17.2 159 191-375 2-170 (260)
428 cd00280 TRFH Telomeric Repeat 64.9 77 0.0017 26.0 11.7 48 421-469 118-165 (200)
429 PF14561 TPR_20: Tetratricopep 64.1 49 0.0011 23.4 7.6 31 379-409 19-49 (90)
430 PF11848 DUF3368: Domain of un 62.8 32 0.00068 20.9 4.9 36 77-112 11-46 (48)
431 PF09670 Cas_Cas02710: CRISPR- 62.6 1.4E+02 0.003 28.2 11.5 52 322-374 142-197 (379)
432 KOG0686 COP9 signalosome, subu 62.5 1.4E+02 0.003 28.1 14.4 57 181-237 152-214 (466)
433 PF10255 Paf67: RNA polymerase 62.4 28 0.0006 32.7 6.6 54 388-441 128-191 (404)
434 COG4976 Predicted methyltransf 62.3 21 0.00046 30.2 5.2 52 356-409 5-56 (287)
435 KOG0376 Serine-threonine phosp 61.9 22 0.00047 33.7 5.8 104 318-426 11-117 (476)
436 PRK10564 maltose regulon perip 61.6 13 0.00027 33.0 4.1 45 65-109 254-298 (303)
437 PF14689 SPOB_a: Sensor_kinase 60.8 14 0.0003 24.0 3.2 23 215-237 28-50 (62)
438 smart00777 Mad3_BUB1_I Mad3/BU 59.6 56 0.0012 24.9 6.7 41 432-472 81-123 (125)
439 PF12862 Apc5: Anaphase-promot 59.4 37 0.00081 24.2 5.7 26 419-444 46-71 (94)
440 KOG0292 Vesicle coat complex C 59.1 88 0.0019 32.5 9.6 158 250-443 625-782 (1202)
441 cd08819 CARD_MDA5_2 Caspase ac 58.2 62 0.0013 22.7 6.8 37 292-329 48-84 (88)
442 cd08326 CARD_CASP9 Caspase act 57.5 53 0.0012 22.9 5.9 33 193-225 44-76 (84)
443 COG5191 Uncharacterized conser 57.2 29 0.00062 30.9 5.4 80 377-456 102-184 (435)
444 KOG4814 Uncharacterized conser 57.0 44 0.00095 33.1 7.0 85 393-477 365-457 (872)
445 PF14689 SPOB_a: Sensor_kinase 56.8 39 0.00085 21.9 4.8 46 226-273 6-51 (62)
446 PF08311 Mad3_BUB1_I: Mad3/BUB 56.4 88 0.0019 23.9 8.5 43 329-371 81-124 (126)
447 COG2912 Uncharacterized conser 55.7 48 0.001 29.1 6.5 58 420-477 187-244 (269)
448 PF04762 IKI3: IKI3 family; I 55.6 3E+02 0.0065 29.8 14.7 28 282-309 814-843 (928)
449 PF11663 Toxin_YhaV: Toxin wit 55.3 15 0.00033 28.0 3.1 34 77-112 104-137 (140)
450 PF09477 Type_III_YscG: Bacter 55.0 82 0.0018 23.1 10.2 81 82-179 20-100 (116)
451 KOG0686 COP9 signalosome, subu 54.4 1.9E+02 0.0041 27.2 14.1 57 150-206 152-214 (466)
452 COG2256 MGS1 ATPase related to 53.5 2E+02 0.0043 27.1 12.9 51 209-259 245-298 (436)
453 KOG1114 Tripeptidyl peptidase 53.3 3.1E+02 0.0066 29.2 13.6 72 327-398 1212-1283(1304)
454 PRK13184 pknD serine/threonine 53.3 3.2E+02 0.0069 29.4 24.4 85 154-238 481-580 (932)
455 PF13762 MNE1: Mitochondrial s 53.1 1.1E+02 0.0024 24.0 9.0 53 208-260 77-130 (145)
456 KOG3824 Huntingtin interacting 52.1 24 0.00053 31.3 4.2 49 358-408 128-176 (472)
457 PRK10564 maltose regulon perip 52.0 36 0.00077 30.3 5.2 41 313-353 259-299 (303)
458 KOG4567 GTPase-activating prot 51.8 1.8E+02 0.004 26.2 9.8 73 331-409 263-345 (370)
459 KOG2908 26S proteasome regulat 51.3 2E+02 0.0042 26.4 9.7 104 366-469 58-178 (380)
460 COG0735 Fur Fe2+/Zn2+ uptake r 51.1 93 0.002 24.5 7.1 62 232-294 8-69 (145)
461 KOG4521 Nuclear pore complex, 51.0 3.7E+02 0.0079 29.4 13.4 55 349-405 986-1044(1480)
462 PF12968 DUF3856: Domain of Un 50.2 69 0.0015 24.1 5.6 62 415-476 56-128 (144)
463 PF11817 Foie-gras_1: Foie gra 49.3 61 0.0013 28.3 6.4 17 356-372 188-204 (247)
464 PF11817 Foie-gras_1: Foie gra 49.1 63 0.0014 28.2 6.5 75 197-271 163-244 (247)
465 KOG2300 Uncharacterized conser 48.9 2.6E+02 0.0056 27.1 31.6 293 37-339 90-473 (629)
466 TIGR02270 conserved hypothetic 48.2 2.5E+02 0.0055 26.8 25.2 25 385-409 255-279 (410)
467 PRK13184 pknD serine/threonine 48.0 3.9E+02 0.0084 28.8 27.6 98 70-176 477-580 (932)
468 KOG2581 26S proteasome regulat 47.0 2.5E+02 0.0055 26.4 11.7 25 385-409 212-236 (493)
469 cd08326 CARD_CASP9 Caspase act 46.9 65 0.0014 22.5 4.9 56 139-194 21-76 (84)
470 PRK09857 putative transposase; 46.3 1E+02 0.0022 27.7 7.4 63 419-481 211-273 (292)
471 COG0790 FOG: TPR repeat, SEL1 46.2 2.2E+02 0.0047 25.4 21.6 16 225-240 128-143 (292)
472 cd08332 CARD_CASP2 Caspase act 43.6 1E+02 0.0023 21.8 5.7 29 194-222 49-77 (90)
473 PRK14700 recombination factor 43.5 2.5E+02 0.0054 25.3 12.6 52 209-260 122-176 (300)
474 PF04781 DUF627: Protein of un 43.4 1.4E+02 0.0029 22.2 6.3 39 432-470 62-100 (111)
475 PF10516 SHNi-TPR: SHNi-TPR; 43.4 43 0.00094 19.1 3.0 29 449-477 2-30 (38)
476 PF11848 DUF3368: Domain of un 42.8 76 0.0017 19.2 5.2 33 322-354 13-45 (48)
477 KOG2034 Vacuolar sorting prote 42.6 4.3E+02 0.0094 27.8 24.5 55 121-177 362-418 (911)
478 COG5191 Uncharacterized conser 42.3 58 0.0013 29.1 5.0 70 410-479 103-173 (435)
479 TIGR02270 conserved hypothetic 41.8 3.2E+02 0.0069 26.1 24.4 231 124-372 45-278 (410)
480 PF06957 COPI_C: Coatomer (COP 41.7 3.2E+02 0.007 26.1 10.5 32 416-447 302-333 (422)
481 PF09670 Cas_Cas02710: CRISPR- 41.0 3.2E+02 0.0069 25.8 12.2 56 218-274 139-198 (379)
482 PF10475 DUF2450: Protein of u 40.8 2.2E+02 0.0048 25.6 8.8 53 184-238 103-155 (291)
483 COG0735 Fur Fe2+/Zn2+ uptake r 40.5 1.5E+02 0.0033 23.2 6.8 12 363-374 37-48 (145)
484 KOG2581 26S proteasome regulat 39.8 2.7E+02 0.0058 26.3 8.8 91 389-479 176-278 (493)
485 PF02184 HAT: HAT (Half-A-TPR) 39.2 68 0.0015 17.6 3.4 26 429-455 2-27 (32)
486 KOG1524 WD40 repeat-containing 37.4 2.1E+02 0.0045 27.9 8.0 54 348-408 575-628 (737)
487 KOG0530 Protein farnesyltransf 37.3 2.9E+02 0.0063 24.4 12.2 131 321-455 53-188 (318)
488 KOG1839 Uncharacterized protei 36.9 1.7E+02 0.0037 32.0 8.2 120 356-476 942-1085(1236)
489 PF04762 IKI3: IKI3 family; I 36.8 5E+02 0.011 28.2 11.8 113 245-372 812-927 (928)
490 KOG0991 Replication factor C, 36.8 2.8E+02 0.0061 24.0 12.5 147 185-356 136-282 (333)
491 KOG3677 RNA polymerase I-assoc 36.7 1.9E+02 0.0042 27.2 7.5 111 348-458 237-353 (525)
492 PF03745 DUF309: Domain of unk 36.7 1.2E+02 0.0026 19.7 6.3 55 77-140 8-62 (62)
493 PF08195 TRI9: TRI9 protein; 36.7 13 0.00027 20.6 0.1 13 478-490 10-22 (43)
494 KOG3636 Uncharacterized conser 36.3 3.7E+02 0.0081 25.6 9.2 85 237-322 175-271 (669)
495 KOG0403 Neoplastic transformat 35.6 4.1E+02 0.0088 25.5 16.4 73 151-223 512-587 (645)
496 PRK11639 zinc uptake transcrip 34.8 1.6E+02 0.0035 23.9 6.3 34 362-396 41-74 (169)
497 PF04034 DUF367: Domain of unk 34.8 2.1E+02 0.0045 21.9 6.9 56 382-437 66-122 (127)
498 COG5108 RPO41 Mitochondrial DN 34.1 2.2E+02 0.0048 28.7 7.8 70 153-222 33-115 (1117)
499 KOG2422 Uncharacterized conser 33.9 4.9E+02 0.011 26.0 11.9 137 75-224 349-497 (665)
500 PRK07003 DNA polymerase III su 33.7 5.4E+02 0.012 27.1 10.7 46 327-374 180-226 (830)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-72 Score=577.61 Aligned_cols=480 Identities=31% Similarity=0.585 Sum_probs=459.6
Q ss_pred cccchhhhhh---chhhHHHHHHHHhhhcCCC--CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCCCCCCceehHHHHH
Q 011249 2 TSKYLVPRSK---TFNQLKQVHSYLLKTLTKP--HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLWTSLIR 76 (490)
Q Consensus 2 ~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~ 76 (490)
||..++++|+ ++..+.++|..+.+ .| +++. +++.|+.+|++.|+ +++|.++|++|+.||. .+||++|.
T Consensus 189 t~~~ll~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~--~~n~Li~~y~k~g~-~~~A~~lf~~m~~~d~-~s~n~li~ 261 (857)
T PLN03077 189 TFPCVLRTCGGIPDLARGREVHAHVVR---FGFELDVD--VVNALITMYVKCGD-VVSARLVFDRMPRRDC-ISWNAMIS 261 (857)
T ss_pred HHHHHHHHhCCccchhhHHHHHHHHHH---cCCCcccc--hHhHHHHHHhcCCC-HHHHHHHHhcCCCCCc-chhHHHHH
Confidence 5677888876 45678899999999 77 8899 99999999999999 9999999999999999 99999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChH---------------------HHHHHHHHhcCCHHH
Q 011249 77 NHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLL---------------------EAVICGYTKIGLMDD 135 (490)
Q Consensus 77 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~---------------------~~l~~~~~~~g~~~~ 135 (490)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.++.. ++++.+|++.|++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999988765 789999999999999
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhcc----CC---------------------------------
Q 011249 136 AQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTE----KN--------------------------------- 178 (490)
Q Consensus 136 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~--------------------------------- 178 (490)
|.++|++|.+||..+||.++.+|++.|++++|+++|++|.+ ||
T Consensus 342 A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 421 (857)
T PLN03077 342 AEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421 (857)
T ss_pred HHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999953 33
Q ss_pred --chhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHh
Q 011249 179 --SVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACT 256 (490)
Q Consensus 179 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 256 (490)
..+|+.|+.+|++.|++++|.++|++|.++|..+|+.++.+|.+.|+.++|+++|++|.. ++.||..||..++.+|+
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 445678888899999999999999999999999999999999999999999999999986 58999999999999999
Q ss_pred ccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 011249 257 QLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLK 336 (490)
Q Consensus 257 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 336 (490)
+.|+++.+.+++..+.+.|+.++..++++|+.+|+++|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|+++|++
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhh
Q 011249 337 MRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGT 416 (490)
Q Consensus 337 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 416 (490)
|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+.+|+.|+..+|+.++++|.+.|++++|.+++++|+.+|+..+
T Consensus 580 M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~ 659 (857)
T PLN03077 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAV 659 (857)
T ss_pred HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHH
Confidence 99999999999999999999999999999999999996679999999999999999999999999999999998999999
Q ss_pred HHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccccCCCccccCC
Q 011249 417 WGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSWISS 490 (490)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 490 (490)
|++|+.+|..+|+.+.++...+++.+++|+++..|..|+++|...|+|++|.++.+.|++.|++++||+|||++
T Consensus 660 ~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~ 733 (857)
T PLN03077 660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV 733 (857)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.2e-69 Score=536.95 Aligned_cols=442 Identities=31% Similarity=0.525 Sum_probs=415.1
Q ss_pred CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCC-----CCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhh
Q 011249 31 HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIP-----KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFT 105 (490)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 105 (490)
.+.. .|+.++..|.+.|+ +++|.++|+.|. .|+. .+|+.++.+|.+.++++.+.+++..|.+.|+.||..+
T Consensus 85 ~~~~--~~~~~i~~l~~~g~-~~~Al~~f~~m~~~~~~~~~~-~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~ 160 (697)
T PLN03081 85 KSGV--SLCSQIEKLVACGR-HREALELFEILEAGCPFTLPA-STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160 (697)
T ss_pred CCce--eHHHHHHHHHcCCC-HHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHH
Confidence 4556 78999999999999 999999999885 3455 8999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhcc---------
Q 011249 106 FSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTE--------- 176 (490)
Q Consensus 106 ~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------- 176 (490)
|+.++.. |++.|++++|.++|++|.+||..+||.++.+|++.|++++|+++|++|.+
T Consensus 161 ~n~Li~~--------------y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 226 (697)
T PLN03081 161 MNRVLLM--------------HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226 (697)
T ss_pred HHHHHHH--------------HhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhh
Confidence 9998886 66777777777777777777777777777777777777777777777742
Q ss_pred ------------------------------CCchhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCCh
Q 011249 177 ------------------------------KNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYA 226 (490)
Q Consensus 177 ------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 226 (490)
+|..+|+.++.+|++.|++++|.++|++|.++|..+||.++.+|++.|++
T Consensus 227 ~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH
Confidence 35667789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcc
Q 011249 227 KAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRI 306 (490)
Q Consensus 227 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 306 (490)
++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..+.+.|++|+..++++|+.+|++.|++++|.++|++|
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHH
Q 011249 307 KNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLT 386 (490)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 386 (490)
.++|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.+|+.|+..+|+
T Consensus 387 ~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 387 PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred CCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998779999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcch
Q 011249 387 CMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKD 466 (490)
Q Consensus 387 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 466 (490)
.++++|++.|++++|.++++++...|+..+|++++.+|...|+++.|..+++++.+.+|+++..|..|+++|.+.|+|++
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccCCCccccCC
Q 011249 467 SEIVKMMISETEKKKSPGCSWISS 490 (490)
Q Consensus 467 A~~~~~~~~~~~~~~~~~~~~~~~ 490 (490)
|.++++.|.+.|+++.||+|||++
T Consensus 547 A~~v~~~m~~~g~~k~~g~s~i~~ 570 (697)
T PLN03081 547 AAKVVETLKRKGLSMHPACTWIEV 570 (697)
T ss_pred HHHHHHHHHHcCCccCCCeeEEEE
Confidence 999999999999999999999974
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.6e-65 Score=521.63 Aligned_cols=468 Identities=28% Similarity=0.398 Sum_probs=425.7
Q ss_pred ccchhhhhh---chhhHHHHHHHHhhhcCCC--CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCCCCCCceehHHHHHH
Q 011249 3 SKYLVPRSK---TFNQLKQVHSYLLKTLTKP--HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLWTSLIRN 77 (490)
Q Consensus 3 ~~~l~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~ 77 (490)
+..+++.|. .++.+.++|.++.+ .+ ++.. +++.|+.+|++.|+ ++.|+++|++|+.|+. .+||++|.+
T Consensus 89 ~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~--~~n~li~~~~~~g~-~~~A~~~f~~m~~~d~-~~~n~li~~ 161 (857)
T PLN03077 89 YVALFRLCEWKRAVEEGSRVCSRALS---SHPSLGVR--LGNAMLSMFVRFGE-LVHAWYVFGKMPERDL-FSWNVLVGG 161 (857)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHH---cCCCCCch--HHHHHHHHHHhCCC-hHHHHHHHhcCCCCCe-eEHHHHHHH
Confidence 445566653 56778999999998 66 7778 99999999999999 9999999999999999 999999999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChH---------------------HHHHHHHHhcCCHHHH
Q 011249 78 HVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLL---------------------EAVICGYTKIGLMDDA 136 (490)
Q Consensus 78 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~---------------------~~l~~~~~~~g~~~~A 136 (490)
|++.|++++|+++|++|...|+.||..||+.++.+|+..+++. ++++.+|++.|++++|
T Consensus 162 ~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 241 (857)
T PLN03077 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHH
Confidence 9999999999999999999999999999999999998876653 7899999999999999
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhcc---------------------------------------C
Q 011249 137 QRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTE---------------------------------------K 177 (490)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------------------------------~ 177 (490)
.++|++|.+||..+||.++.+|++.|++++|+++|++|.+ |
T Consensus 242 ~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 321 (857)
T PLN03077 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321 (857)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999963 3
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhc
Q 011249 178 NSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQ 257 (490)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 257 (490)
|..+|+.++.+|++.|++++|.++|++|.+||..+|+.++.+|.+.|++++|+++|++|.+.|+.||..||..++.+|++
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence 56677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011249 258 LGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKM 337 (490)
Q Consensus 258 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 337 (490)
.|+++.|.++++.+.+.|+.++..++++|+.+|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhH
Q 011249 338 RNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTW 417 (490)
Q Consensus 338 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 417 (490)
.. ++.||..||..++.+|++.|.++.+.+++..+.+. |+.++..+++.|+++|.++|++++|.++|+.+ .+|..+|
T Consensus 482 ~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~ 557 (857)
T PLN03077 482 LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSW 557 (857)
T ss_pred Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhH
Confidence 86 59999999999999999999999999999999985 99888888888888888888888888888877 6788888
Q ss_pred HHHHHHHhhhCChHHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCcchHHHHHHHhh-hcccccC
Q 011249 418 GALLGACKVHVNAELGEIAARHLLELG--PEKTGNSALLANIYASMGKWKDSEIVKMMIS-ETEKKKS 482 (490)
Q Consensus 418 ~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~ 482 (490)
++++.+|.+.|+.++|.++|++|.+.+ |+ ..+|..++.+|.+.|++++|.++|+.|. +.|+.|+
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 888888888888888888888887754 44 5567777778888888888888888887 4566554
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-60 Score=481.19 Aligned_cols=466 Identities=16% Similarity=0.206 Sum_probs=419.5
Q ss_pred hhhchhhHHHHHHHHhhhcCCC---CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCCCCCCceehHHHHHHHHhcCChh
Q 011249 9 RSKTFNQLKQVHSYLLKTLTKP---HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFR 85 (490)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 85 (490)
.+|+++.+..+++.+.+ .+ ++.. .++.++..|.+.|. +++|..+|+.|+.|+. .+|+.++.+|++.|+++
T Consensus 382 r~G~l~eAl~Lfd~M~~---~gvv~~~~v--~~~~li~~~~~~g~-~~eAl~lf~~M~~pd~-~Tyn~LL~a~~k~g~~e 454 (1060)
T PLN03218 382 RDGRIKDCIDLLEDMEK---RGLLDMDKI--YHAKFFKACKKQRA-VKEAFRFAKLIRNPTL-STFNMLMSVCASSQDID 454 (1060)
T ss_pred HCcCHHHHHHHHHHHHh---CCCCCchHH--HHHHHHHHHHHCCC-HHHHHHHHHHcCCCCH-HHHHHHHHHHHhCcCHH
Confidence 34888999999999998 66 5666 88889999999999 9999999999999888 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChH---------------------HHHHHHHHhcCCHHHHHHHHhhcC
Q 011249 86 QSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLL---------------------EAVICGYTKIGLMDDAQRLFDSMA 144 (490)
Q Consensus 86 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~---------------------~~l~~~~~~~g~~~~A~~~~~~~~ 144 (490)
.|.++|+.|.+.|+.||..+|+.+|.+|++.|+.. +.++.+|++.|++++|.++|+.|.
T Consensus 455 ~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876 678999999999999999999996
Q ss_pred C----CCHhHHHHHHHHHHhCCChHHHHHHHHHhc------cCCchhHHHHHHHHHhcCChhHHHHHHhhcCC----CCH
Q 011249 145 E----RNVISWSAMVAGYANCGNMKAAKEFYDRMT------EKNSVTWVAMIAGYGKCGEVREAKKVFDEISE----PDA 210 (490)
Q Consensus 145 ~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~ 210 (490)
+ ||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|+.|.+ |+.
T Consensus 535 ~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~ 614 (1060)
T PLN03218 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCh
Confidence 4 899999999999999999999999999995 36889999999999999999999999999975 788
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 011249 211 SCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMH 290 (490)
Q Consensus 211 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 290 (490)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|++|+..+|+.++.+|
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay 694 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHhccc----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHH
Q 011249 291 SKCGYLDLAWREFSRIK----NKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGC 366 (490)
Q Consensus 291 ~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 366 (490)
++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.
T Consensus 695 ~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~ 774 (1060)
T PLN03218 695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999985 48999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHhh----c-------------------CChHHHHHHHHhcc---CCCChhhHHHH
Q 011249 367 KQFELMTRVFGIKPLTEHLTCMVDLLGR----S-------------------GQLEKAHSLIMDYK---DFCDAGTWGAL 420 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~---~~~~~~~~~~l 420 (490)
++++.|.+. |+.|+..+|+.++..|.+ + +..++|..+|++|. ..|+..+|+.+
T Consensus 775 ~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~v 853 (1060)
T PLN03218 775 DLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQV 853 (1060)
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 999999985 999999999998876432 1 12367889999888 67999999999
Q ss_pred HHHHhhhCChHHHHHHHHHHHhc-CCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccccCCC
Q 011249 421 LGACKVHVNAELGEIAARHLLEL-GPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPG 484 (490)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 484 (490)
+.++...+..+.+..+++.+... .+.+...|..|+..+.+. .++|..+++.|...|+.|+-.
T Consensus 854 L~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 854 LGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 97777888888888888876643 356678899999887322 358999999999999987754
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-57 Score=456.72 Aligned_cols=431 Identities=16% Similarity=0.229 Sum_probs=397.7
Q ss_pred CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCCCCCC----ceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhH
Q 011249 31 HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKT----QFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTF 106 (490)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 106 (490)
++.. .+..++..+++.|+ +++|+++|++|+.++. ...++.++..|.+.|..++|..+|+.|.. ||..+|
T Consensus 368 ~~~~--~~~~~y~~l~r~G~-l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 368 RKSP--EYIDAYNRLLRDGR-IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCch--HHHHHHHHHHHCcC-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 6677 88999999999999 9999999999986544 13566778889999999999999999975 999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC----CCHhHHHHHHHHHHhCCChHHHHHHHHHhc----cCC
Q 011249 107 SSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE----RNVISWSAMVAGYANCGNMKAAKEFYDRMT----EKN 178 (490)
Q Consensus 107 ~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~ 178 (490)
+.+|.+ |++.|+++.|.++|+.|.+ ||..+|+.++.+|++.|++++|.++|++|. .||
T Consensus 441 n~LL~a--------------~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 441 NMLMSV--------------CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred HHHHHH--------------HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence 999987 6788999999999999975 899999999999999999999999999998 479
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHhhcCC----CCHHhHHHHHHHHHhcCChHHHHHHHHHHHH--cCcccChhhHHHHH
Q 011249 179 SVTWVAMIAGYGKCGEVREAKKVFDEISE----PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQ--ENVRISEVAMVGAI 252 (490)
Q Consensus 179 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~l~ 252 (490)
..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI 586 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 99999999999999999999999999964 9999999999999999999999999999986 67899999999999
Q ss_pred HHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC----CChhHHHHHHHHHHhcCChH
Q 011249 253 SACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN----KDVISYSSMITAFADHGKSQ 328 (490)
Q Consensus 253 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~ 328 (490)
.+|++.|++++|.++|+.|.+.+++|+..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|+++
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~e 666 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999985 79999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhc
Q 011249 329 EALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDY 408 (490)
Q Consensus 329 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 408 (490)
+|.+++++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+. ++.|+..+|+.|+.+|++.|++++|.++|++|
T Consensus 667 eA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999985 99999999999999999999999999999998
Q ss_pred c---CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcC-CCCCchHHHHHHHHH----hcC------------------
Q 011249 409 K---DFCDAGTWGALLGACKVHVNAELGEIAARHLLELG-PEKTGNSALLANIYA----SMG------------------ 462 (490)
Q Consensus 409 ~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~----~~g------------------ 462 (490)
. ..||..+|+.++.+|.+.|++++|.++++++.+.+ ..+..+|..++.++. +++
T Consensus 746 ~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n 825 (1060)
T PLN03218 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIEN 825 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccccc
Confidence 7 67999999999999999999999999999999876 334677888776543 221
Q ss_pred -CcchHHHHHHHhhhcccccCC
Q 011249 463 -KWKDSEIVKMMISETEKKKSP 483 (490)
Q Consensus 463 -~~~~A~~~~~~~~~~~~~~~~ 483 (490)
..++|..+|++|.+.|+.|+.
T Consensus 826 ~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 826 KWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred chHHHHHHHHHHHHHCCCCCCH
Confidence 236799999999999998774
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-56 Score=447.71 Aligned_cols=454 Identities=19% Similarity=0.235 Sum_probs=404.6
Q ss_pred cccchhhhhh---chhhHHHHHHHHhhhcCCC--CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCCCCCCceehHHHHH
Q 011249 2 TSKYLVPRSK---TFNQLKQVHSYLLKTLTKP--HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLWTSLIR 76 (490)
Q Consensus 2 ~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~ 76 (490)
||..++++|. +.+.+.++|..+.+ .| |++. +++.|+++|++.|+ +++|.++|++|+.|+. .+||+++.
T Consensus 125 t~~~ll~a~~~~~~~~~a~~l~~~m~~---~g~~~~~~--~~n~Li~~y~k~g~-~~~A~~lf~~m~~~~~-~t~n~li~ 197 (697)
T PLN03081 125 TYDALVEACIALKSIRCVKAVYWHVES---SGFEPDQY--MMNRVLLMHVKCGM-LIDARRLFDEMPERNL-ASWGTIIG 197 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCcchH--HHHHHHHHHhcCCC-HHHHHHHHhcCCCCCe-eeHHHHHH
Confidence 4556666664 56678999999999 77 8899 99999999999999 9999999999999999 99999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC----CCHhHHH
Q 011249 77 NHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE----RNVISWS 152 (490)
Q Consensus 77 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 152 (490)
+|++.|++++|+++|++|.+.|+.|+..+|+.++.+ +++.|..+.+.+++..+.+ +|..+|+
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a--------------~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n 263 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA--------------SAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH--------------HhcCCcHHHHHHHHHHHHHhCCCccceeHH
Confidence 999999999999999999999999999999999987 4667888889988877754 7999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhcCC----CCHHhHHHHHHHHHhcCChHH
Q 011249 153 AMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISE----PDASCWAAMTVCYVQNGYAKA 228 (490)
Q Consensus 153 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~ 228 (490)
.|+.+|++.|++++|.++|++|.++|..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~ 343 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence 9999999999999999999999999999999999999999999999999999953 999999999999999999999
Q ss_pred HHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC
Q 011249 229 AIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN 308 (490)
Q Consensus 229 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 308 (490)
|.+++..|.+.|+.||..+++.++..|++.|++++|.++|+.|. .+|..+||+++.+|++.|+.++|.++|++|.+
T Consensus 344 a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999985 47889999999999999999999999999975
Q ss_pred ----CChhHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCch
Q 011249 309 ----KDVISYSSMITAFADHGKSQEALDMFLKMRN-EGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTE 383 (490)
Q Consensus 309 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 383 (490)
||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++.+|.+.|++++|.++++++ +..|+..
T Consensus 420 ~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~ 495 (697)
T PLN03081 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVN 495 (697)
T ss_pred hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHH
Confidence 8999999999999999999999999999986 699999999999999999999999999998876 7889999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcc-CCC-ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCC--CCCchHHHH-----
Q 011249 384 HLTCMVDLLGRSGQLEKAHSLIMDYK-DFC-DAGTWGALLGACKVHVNAELGEIAARHLLELGP--EKTGNSALL----- 454 (490)
Q Consensus 384 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~~~~~~~l----- 454 (490)
+|+.++.+|...|+++.|..+++++. ..| +..+|..+++.|.+.|++++|.+++++|.+.+- .....|..+
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~ 575 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDH 575 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEE
Confidence 99999999999999999999998876 334 567999999999999999999999999998651 111111000
Q ss_pred ---HH--HH-HhcCCcchHHHHHHHhhhcccccCCC
Q 011249 455 ---AN--IY-ASMGKWKDSEIVKMMISETEKKKSPG 484 (490)
Q Consensus 455 ---~~--~~-~~~g~~~~A~~~~~~~~~~~~~~~~~ 484 (490)
+. .+ ....-++...++..+|.+.|..+++.
T Consensus 576 ~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 576 SFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred EEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 00 00 00112445667788888888877654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.8e-31 Score=277.01 Aligned_cols=459 Identities=13% Similarity=0.054 Sum_probs=256.9
Q ss_pred hhhhhchhhHHHHHHHHhhhcCCC-CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCC
Q 011249 7 VPRSKTFNQLKQVHSYLLKTLTKP-HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAH 83 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 83 (490)
+...|+++.+...++...+ .. .++. .+..+...+...|+ +++|.+.|+++. .|+.......++..+.+.|+
T Consensus 373 ~~~~g~~~~A~~~~~~~~~---~~~~~~~--~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 373 YLALGDFEKAAEYLAKATE---LDPENAA--ARTQLGISKLSQGD-PSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHCCCHHHHHHHHHHHHh---cCCCCHH--HHHHHHHHHHhCCC-hHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCC
Confidence 3344555555555555544 33 3444 45555555555555 555555555443 12221333334444444444
Q ss_pred hhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChH--------------------HHHHHHHHhcCCHHHHHHHHhhc
Q 011249 84 FRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLL--------------------EAVICGYTKIGLMDDAQRLFDSM 143 (490)
Q Consensus 84 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--------------------~~l~~~~~~~g~~~~A~~~~~~~ 143 (490)
+++|..+++.+... .+++..++..+...+...++.. ..+...+...|++++|...|+++
T Consensus 447 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 525 (899)
T TIGR02917 447 FDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKV 525 (899)
T ss_pred HHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44444444444432 1222333333333333333332 22344556667777777777666
Q ss_pred CC---CCHhHHHHHHHHHHhCCChHHHHHHHHHhccC---CchhHHHHHHHHHhcCChhHHHHHHhhcCC---CCHHhHH
Q 011249 144 AE---RNVISWSAMVAGYANCGNMKAAKEFYDRMTEK---NSVTWVAMIAGYGKCGEVREAKKVFDEISE---PDASCWA 214 (490)
Q Consensus 144 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~ 214 (490)
.+ .+..++..+...+.+.|++++|...++++.+. +...+..++..+...|++++|..+++.+.+ .+...|.
T Consensus 526 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 605 (899)
T TIGR02917 526 LTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL 605 (899)
T ss_pred HHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 54 24556666666666667777777766666532 444555666666666666666666666543 3455666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 011249 215 AMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCG 294 (490)
Q Consensus 215 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 294 (490)
.++.++...|++++|+..|+++.+.. +.+...+..+..++...|++++|..+++.+.+.. +.+...+..++..+...|
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 66666666666666666666666543 2244555666666666666666666666666554 444555666666666666
Q ss_pred ChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHH
Q 011249 295 YLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFEL 371 (490)
Q Consensus 295 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 371 (490)
++++|.++++.+.+ .+...+..+...+...|++++|...|+++... .|+..++..++.++...|++++|.+.+++
T Consensus 684 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666666554 24445555666666666666666666666653 34445555555566666666666666666
Q ss_pred HHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCc
Q 011249 372 MTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTG 449 (490)
Q Consensus 372 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 449 (490)
+.+ ..+.+...+..++..|...|++++|.+.|+++. .++++.++..++..+...|+ .+|+..++++.+..|+++.
T Consensus 762 ~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 838 (899)
T TIGR02917 762 WLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPA 838 (899)
T ss_pred HHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcH
Confidence 655 334445555566666666666666666665554 33344555555555555555 5566666666665566555
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 450 NSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
.+..++.++...|++++|.++++++.+.++
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 555566666666666666666665555443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6e-31 Score=276.25 Aligned_cols=431 Identities=12% Similarity=0.030 Sum_probs=207.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhc
Q 011249 37 YAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACA 114 (490)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 114 (490)
....++..+.+.|+ +++|.++++++. .|+....|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+.
T Consensus 433 ~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 510 (899)
T TIGR02917 433 ADLLLILSYLRSGQ-FDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDI 510 (899)
T ss_pred hHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHH
Confidence 33444455555555 555555555443 22222445555555555555555555555554431 111222222333333
Q ss_pred CCCChH--------------------HHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHH
Q 011249 115 RVPSLL--------------------EAVICGYTKIGLMDDAQRLFDSMAE---RNVISWSAMVAGYANCGNMKAAKEFY 171 (490)
Q Consensus 115 ~~~~~~--------------------~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 171 (490)
..|+.. ..+...+.+.|+.++|..+++++.+ .+...+..++..+...|++++|..++
T Consensus 511 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 333322 2234444455555555555555432 13334444555555555555555555
Q ss_pred HHhccC---CchhHHHHHHHHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccCh
Q 011249 172 DRMTEK---NSVTWVAMIAGYGKCGEVREAKKVFDEISE---PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISE 245 (490)
Q Consensus 172 ~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 245 (490)
+++.+. +...|..++.++...|++++|...|+++.+ .+...+..++.++...|++++|...|+++.+.. +.+.
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 669 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNT 669 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCH
Confidence 555421 344455555555555555555555554432 233444555555555555555555555554432 1234
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--CChhHHHHHHHHHHh
Q 011249 246 VAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--KDVISYSSMITAFAD 323 (490)
Q Consensus 246 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~ 323 (490)
.++..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.|+.+.. |+..++..++.++.+
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 444555555555555555555555554443 33444444455555555555555555555433 333444445555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHH
Q 011249 324 HGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHS 403 (490)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 403 (490)
.|++++|...++++.+.. +.+...+..+...|...|++++|..+|+++.+ ..++++..+..++..+...|+ .+|+.
T Consensus 749 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 555555555555555431 22334444455555555555555555555554 223344445555555555555 44555
Q ss_pred HHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhh
Q 011249 404 LIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMIS 475 (490)
Q Consensus 404 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (490)
+++++. .+.++..+..+...+...|++++|.+.++++++.+|.++.++..++.++.+.|++++|.+++++|+
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 825 YAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 554443 222333444445555555555555555555555555555555555555555555555555555543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.3e-24 Score=229.18 Aligned_cols=460 Identities=11% Similarity=0.057 Sum_probs=282.0
Q ss_pred chhhhhhchhhHHHHHHHHhhhcCCC-CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhc
Q 011249 5 YLVPRSKTFNQLKQVHSYLLKTLTKP-HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLH 81 (490)
Q Consensus 5 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 81 (490)
.++...|+++.|...++.+.+ .. ++.. .....+.......++ .++|++.++++. .|+....+..+...+...
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~---~~p~~~~-la~~y~~~~~~~~g~-~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFN---GAPPELD-LAVEYWRLVAKLPAQ-RPEAINQLQRLNADYPGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHcc---CCCCChH-HHHHHHHHHhhCCcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Confidence 356677899999999999887 54 3332 122222223334588 999999999986 466556788899999999
Q ss_pred CChhHHHHHHHHHHhcCCC----------------CCH---hhHHHHHHHhcCCCChH--------------------HH
Q 011249 82 AHFRQSILLYAKMHRLGVL----------------TSG---FTFSSVLNACARVPSLL--------------------EA 122 (490)
Q Consensus 82 g~~~~A~~~~~~m~~~g~~----------------p~~---~~~~~ll~~~~~~~~~~--------------------~~ 122 (490)
|++++|++.++++.+.... ++. ..+...+..+....... ..
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 9999999999998654210 000 01111122221111111 12
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHhccCCc-----hhH------------
Q 011249 123 VICGYTKIGLMDDAQRLFDSMAE--R-NVISWSAMVAGYANCGNMKAAKEFYDRMTEKNS-----VTW------------ 182 (490)
Q Consensus 123 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~------------ 182 (490)
....+...|++++|+..|++..+ | +...+..+..++.+.|++++|+..|++..+.++ ..+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 24567788999999999998876 4 678899999999999999999999999886321 111
Q ss_pred HHHHHHHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHH-----
Q 011249 183 VAMIAGYGKCGEVREAKKVFDEISE---PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISA----- 254 (490)
Q Consensus 183 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~----- 254 (490)
......+.+.|++++|+..|+++.+ .+...+..+..++...|++++|++.|++..+.... +...+..+...
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 2234567789999999999998875 45667888899999999999999999999875322 23333333333
Q ss_pred -------------------------------------HhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChH
Q 011249 255 -------------------------------------CTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLD 297 (490)
Q Consensus 255 -------------------------------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 297 (490)
+...|++++|...++++.+.. |.++..+..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 334566666666666665554 334555555666666666666
Q ss_pred HHHHHHhcccC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH---------HHHHHHHHhcCCCChHHH
Q 011249 298 LAWREFSRIKN--K-DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQV---------TFIGVLTACSHGGLVEDG 365 (490)
Q Consensus 298 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---------~~~~l~~~~~~~g~~~~a 365 (490)
+|...++++.+ | ++..+..+...+...+++++|...++.+......++.. .+......+...|+.++|
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 66666665543 2 33333333333444455555555444432211111100 011122333444444444
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhc
Q 011249 366 CKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLEL 443 (490)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (490)
..+++ ..++++..+..+...+.+.|++++|++.|+++. .+.+...+..++..+...|++++|++.++++.+.
T Consensus 593 ~~~l~------~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLR------QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHH------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 44443 123344445556666666666666666665554 2334556666666666666666666666666666
Q ss_pred CCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 444 GPEKTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 444 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
.|+++..+..++.++...|++++|.++++++...
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 6666666666666666666666666666666554
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=4.8e-23 Score=217.36 Aligned_cols=454 Identities=12% Similarity=0.061 Sum_probs=272.3
Q ss_pred hhhchhhHHHHHHHHhhhcCCC-CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceeh--------------
Q 011249 9 RSKTFNQLKQVHSYLLKTLTKP-HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLW-------------- 71 (490)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~-------------- 71 (490)
+.++.+.+.+..+++.. .. .++. ++..++..+.+.|+ .++|.+.++++. .|+....+
T Consensus 40 ~~~~~d~a~~~l~kl~~---~~p~~p~--~~~~~~~~~l~~g~-~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 40 ATHREDLVRQSLYRLEL---IDPNNPD--VIAARFRLLLRQGD-SDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred hhCChHHHHHHHHHHHc---cCCCCHH--HHHHHHHHHHhCCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchh
Confidence 44567777777777766 55 7888 99999999999999 999999999886 34431221
Q ss_pred --HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHh-cCCCChH--------------------HHHHHHHH
Q 011249 72 --TSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNAC-ARVPSLL--------------------EAVICGYT 128 (490)
Q Consensus 72 --~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~--------------------~~l~~~~~ 128 (490)
..+...+...|++++|++.|+.+.+.+ +|+...-....... ...+... ..+...+.
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLF 192 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 233446788999999999999988753 23321111111111 1111111 34555566
Q ss_pred hcCCHHHHHHHHhhcCCC-C-----Hh-----------------HHH---------------------------------
Q 011249 129 KIGLMDDAQRLFDSMAER-N-----VI-----------------SWS--------------------------------- 152 (490)
Q Consensus 129 ~~g~~~~A~~~~~~~~~~-~-----~~-----------------~~~--------------------------------- 152 (490)
..|+.++|+..++++.+. . .. .+.
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 666666666666654320 0 00 000
Q ss_pred -HHHHHHHhCCChHHHHHHHHHhcc--C-CchhHHHHHHHHHhcCChhHHHHHHhhcCC--CCH---HhHH---------
Q 011249 153 -AMVAGYANCGNMKAAKEFYDRMTE--K-NSVTWVAMIAGYGKCGEVREAKKVFDEISE--PDA---SCWA--------- 214 (490)
Q Consensus 153 -~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~--------- 214 (490)
.....+...|++++|+..|++..+ | +...+..+..++.+.|++++|+..|++..+ |+. ..|.
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 012234445556666666655553 2 444555555666666666666666655443 211 1111
Q ss_pred ---HHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 011249 215 ---AMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHS 291 (490)
Q Consensus 215 ---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 291 (490)
.....+.+.|++++|+..|+++.+... .+...+..+..++...|++++|.+.|+++.+.. +.+...+..+...|.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 112344555666666666666555421 233444455555566666666666666655543 333334444444432
Q ss_pred hcCChHHHHHHHhcccCCC------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHhcC
Q 011249 292 KCGYLDLAWREFSRIKNKD------------VISYSSMITAFADHGKSQEALDMFLKMRNEGIEPN-QVTFIGVLTACSH 358 (490)
Q Consensus 292 ~~~~~~~A~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 358 (490)
.++.++|..+++.+.... ...+..+...+...|++++|+..|++.++. .|+ ...+..+...|..
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 233444444444332210 112233445566678888888888887773 453 4466667777888
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCchHHHHH--------------------------------------------HHHHhh
Q 011249 359 GGLVEDGCKQFELMTRVFGIKPLTEHLTCM--------------------------------------------VDLLGR 394 (490)
Q Consensus 359 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------------------------------------~~~~~~ 394 (490)
.|++++|...++++.+. .+.++..+..+ +..+..
T Consensus 508 ~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred cCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 88888888888887652 22233333222 334445
Q ss_pred cCChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHh
Q 011249 395 SGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMI 474 (490)
Q Consensus 395 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (490)
.|+.++|.++++. .++++..+..+...+...|++++|+..|+++++..|+++.++..++.+|...|++++|++.++++
T Consensus 586 ~G~~~eA~~~l~~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 586 SGKEAEAEALLRQ--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred CCCHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5566666665552 23455667778888999999999999999999999999999999999999999999999999988
Q ss_pred hhcc
Q 011249 475 SETE 478 (490)
Q Consensus 475 ~~~~ 478 (490)
.+..
T Consensus 664 l~~~ 667 (1157)
T PRK11447 664 PATA 667 (1157)
T ss_pred hccC
Confidence 7643
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=6.6e-25 Score=197.83 Aligned_cols=387 Identities=16% Similarity=0.144 Sum_probs=322.3
Q ss_pred CCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcC
Q 011249 65 CKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMA 144 (490)
Q Consensus 65 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 144 (490)
|....+|..+...+-.+|++.+|+.+|+.+.+. .|+...-.+-+.+ ++...|+.+.|.+.|....
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~-------------al~~~~~~~~a~~~~~~al 177 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAA-------------ALVTQGDLELAVQCFFEAL 177 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHH-------------HHHhcCCCcccHHHHHHHH
Confidence 333367888999999999999999999999986 5654433322222 4788899999999999888
Q ss_pred C--CCHh-HHHHHHHHHHhCCChHHHHHHHHHhccC---CchhHHHHHHHHHhcCChhHHHHHHhhcCCCC---HHhHHH
Q 011249 145 E--RNVI-SWSAMVAGYANCGNMKAAKEFYDRMTEK---NSVTWVAMIAGYGKCGEVREAKKVFDEISEPD---ASCWAA 215 (490)
Q Consensus 145 ~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ 215 (490)
+ |+.. ....+...+-..|+.++|...|.+..+. -...|..|.-.+-..|+...|+..|++..+.| ...|-.
T Consensus 178 qlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiN 257 (966)
T KOG4626|consen 178 QLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYIN 257 (966)
T ss_pred hcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhh
Confidence 7 4433 3344566677789999999999988864 45688999999999999999999999988733 467889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCccc-ChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 011249 216 MTVCYVQNGYAKAAIEMYKVMRQENVRI-SEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCG 294 (490)
Q Consensus 216 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 294 (490)
|...|-..+.+++|+..|.+.... .| ....+..+...|...|.++.|+..|++..+.. |.-+..|+.|..++-..|
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G 334 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKG 334 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhcc
Confidence 999999999999999999988765 34 45678888888999999999999999998876 556788999999999999
Q ss_pred ChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHhcCCCChHHHHHHHH
Q 011249 295 YLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQ-VTFIGVLTACSHGGLVEDGCKQFE 370 (490)
Q Consensus 295 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~ 370 (490)
++.+|.+.|.+... ....+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...|-++|++++|+..++
T Consensus 335 ~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 335 SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 99999999998876 3567889999999999999999999999988 56765 478889999999999999999999
Q ss_pred HHHHHcCCCCC-chHHHHHHHHHhhcCChHHHHHHHHhcc-CCCC-hhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC
Q 011249 371 LMTRVFGIKPL-TEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCD-AGTWGALLGACKVHVNAELGEIAARHLLELGPEK 447 (490)
Q Consensus 371 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 447 (490)
+..+ +.|+ ...|+.+...|...|+.+.|.+.+.+.. ..|. ...++.|...+...|+..+|++.|+.++++.|+.
T Consensus 413 ealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 413 EALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred HHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 9975 5666 7788999999999999999999998776 4443 5688999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCCcchHHHHHHHh
Q 011249 448 TGNSALLANIYASMGKWKDSEIVKMMI 474 (490)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (490)
|.+|..++-++.--.+|.+-.+.++++
T Consensus 490 pdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 490 PDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred chhhhHHHHHHHHHhcccchHHHHHHH
Confidence 999999998888777887755555444
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.1e-23 Score=190.09 Aligned_cols=351 Identities=15% Similarity=0.147 Sum_probs=305.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhH---HHHHHHHHhcCChh
Q 011249 123 VICGYTKIGLMDDAQRLFDSMAE--R-NVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTW---VAMIAGYGKCGEVR 196 (490)
Q Consensus 123 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~ 196 (490)
+...+-..|++++|+.+++.+.+ | .+..|..+..++...|+.+.|.+.|.+.++-|+..| ..+...+-..|+++
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ 201 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLE 201 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccc
Confidence 44567889999999999999986 3 567899999999999999999999999997655433 45666677789999
Q ss_pred HHHHHHhhcCC--C-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccC-hhhHHHHHHHHhccCChHHHHHHHHHHH
Q 011249 197 EAKKVFDEISE--P-DASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRIS-EVAMVGAISACTQLGDVEMAAILAKHVD 272 (490)
Q Consensus 197 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 272 (490)
+|...+.+..+ | -...|..|...+-.+|+...|+..|++..+. .|+ ...|..|...|...+.++.|...|.+..
T Consensus 202 ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 202 EAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred hhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 99999988765 3 3457999999999999999999999999875 444 4689999999999999999999999988
Q ss_pred hcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HH
Q 011249 273 EGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--KD-VISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQ-VT 348 (490)
Q Consensus 273 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~ 348 (490)
... +....++..+...|-.+|.++-|+..|++..+ |+ +..|+.|..++...|+..+|...|.+... +.|+. ..
T Consensus 280 ~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hada 356 (966)
T KOG4626|consen 280 NLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADA 356 (966)
T ss_pred hcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHH
Confidence 765 55677778888899999999999999999887 43 56899999999999999999999999998 46654 58
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCCC-hhhHHHHHHHHhh
Q 011249 349 FIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCD-AGTWGALLGACKV 426 (490)
Q Consensus 349 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~ 426 (490)
.+.|...+...|.+++|..+|....+ -.+.-...++.|...|..+|++++|+..|++.. +.|+ ...++.+...|..
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHH
Confidence 89999999999999999999999986 334446778999999999999999999998776 6665 4699999999999
Q ss_pred hCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccc
Q 011249 427 HVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKK 480 (490)
Q Consensus 427 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 480 (490)
.|+.+.|++.+.+++..+|.-.++++.|+.+|...|+..+|+.-++...+..+.
T Consensus 435 ~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999999999998876553
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=2.8e-21 Score=191.73 Aligned_cols=386 Identities=12% Similarity=0.019 Sum_probs=281.3
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C
Q 011249 71 WTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE--R-N 147 (490)
Q Consensus 71 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~ 147 (490)
+......+.+.|++++|+..|++..+. .|+...|..+-. +|.+.|++++|+..++...+ | +
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~--------------~~~~l~~~~~Ai~~~~~al~l~p~~ 193 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAA--------------CHNALGDWEKVVEDTTAALELDPDY 193 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHH--------------HHHHhCCHHHHHHHHHHHHHcCCCC
Confidence 345666778888899999999887765 566554443332 37788888888888888775 3 4
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHhccCC---chhHHHHHHHHHhcCChhHHHHHHhhcCC-----------------
Q 011249 148 VISWSAMVAGYANCGNMKAAKEFYDRMTEKN---SVTWVAMIAGYGKCGEVREAKKVFDEISE----------------- 207 (490)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------- 207 (490)
...|..+..++...|++++|+..|......+ ......++...........+...++.-..
T Consensus 194 ~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 273 (615)
T TIGR00990 194 SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRP 273 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccC
Confidence 5678888888888899888888776554321 11111111111110011112222111110
Q ss_pred ------------CCH---HhHHHHHHHH---HhcCChHHHHHHHHHHHHcC-ccc-ChhhHHHHHHHHhccCChHHHHHH
Q 011249 208 ------------PDA---SCWAAMTVCY---VQNGYAKAAIEMYKVMRQEN-VRI-SEVAMVGAISACTQLGDVEMAAIL 267 (490)
Q Consensus 208 ------------~~~---~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 267 (490)
.+. ..+..+...+ ...+++++|++.|++....+ ..| ....+..+...+...|++++|...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 274 KPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred CcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 000 0111111111 22468999999999998764 233 345677888888999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011249 268 AKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP 344 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 344 (490)
++...+.. |.....|..+..++...|++++|...|+++.+ .+...|..+...+...|++++|...|++.++. .|
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P 430 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DP 430 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--Cc
Confidence 99998875 45567888899999999999999999998765 36788999999999999999999999999984 55
Q ss_pred c-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCCC-hhhH----
Q 011249 345 N-QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCD-AGTW---- 417 (490)
Q Consensus 345 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~---- 417 (490)
+ ...+..+...+.+.|++++|+..+++..+ ..+.++..++.+..++...|++++|++.|++.. ..|+ ...+
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~ 508 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVL 508 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHH
Confidence 4 55777888889999999999999999987 455667888999999999999999999998866 3232 1111
Q ss_pred ---HHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 418 ---GALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 418 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
+.....+...|++++|.++++++++.+|++..++..++.++.+.|++++|.+.+++..+.
T Consensus 509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 509 PLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 112222344699999999999999999999999999999999999999999999988765
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=2.7e-20 Score=188.18 Aligned_cols=450 Identities=8% Similarity=-0.007 Sum_probs=290.3
Q ss_pred hhhchhhHHHHHHHHhhhcCCC-CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCChh
Q 011249 9 RSKTFNQLKQVHSYLLKTLTKP-HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAHFR 85 (490)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 85 (490)
.-|++..|...+++..+ .. .++. ++..|...|.+.|+ +++|+..+++.. .|+. ..|..++..+ ++++
T Consensus 56 ~~Gd~~~A~~~l~~Al~---~dP~n~~--~~~~LA~~yl~~g~-~~~A~~~~~kAv~ldP~n-~~~~~~La~i---~~~~ 125 (987)
T PRK09782 56 KNNDEATAIREFEYIHQ---QVPDNIP--LTLYLAEAYRHFGH-DDRARLLLEDQLKRHPGD-ARLERSLAAI---PVEV 125 (987)
T ss_pred hCCCHHHHHHHHHHHHH---hCCCCHH--HHHHHHHHHHHCCC-HHHHHHHHHHHHhcCccc-HHHHHHHHHh---ccCh
Confidence 44788888888888877 55 6677 99999999999999 999999999987 4544 3333333333 8999
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHh------------------------cCCCC---hHHHHHHHHHhcCCHHHHHH
Q 011249 86 QSILLYAKMHRLGVLTSGFTFSSVLNAC------------------------ARVPS---LLEAVICGYTKIGLMDDAQR 138 (490)
Q Consensus 86 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~------------------------~~~~~---~~~~l~~~~~~~g~~~~A~~ 138 (490)
+|..+|+++.+. .|+......++... ...|. ....+...|.+.|++++|+.
T Consensus 126 kA~~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 126 KSVTTVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred hHHHHHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 999999999887 44433222222211 11112 12334677788888888888
Q ss_pred HHhhcCCC---CHhHHHHHHHHHHh-CCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhcCC-----C-
Q 011249 139 LFDSMAER---NVISWSAMVAGYAN-CGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISE-----P- 208 (490)
Q Consensus 139 ~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~- 208 (490)
+++++.+. +......|..+|.+ .++ +++..+++...+.|+..+..++..|.+.|+.++|.++++++.. |
T Consensus 204 lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 204 LYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 88777651 22223333334443 233 4444443332233444444444444444444444444444321 0
Q ss_pred --------------------------------------------------------------------------------
Q 011249 209 -------------------------------------------------------------------------------- 208 (490)
Q Consensus 209 -------------------------------------------------------------------------------- 208 (490)
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence
Q ss_pred ------------CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-C-cc--------------------------------
Q 011249 209 ------------DASCWAAMTVCYVQNGYAKAAIEMYKVMRQE-N-VR-------------------------------- 242 (490)
Q Consensus 209 ------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~-------------------------------- 242 (490)
+......+.....+.|+.++|.++|++.... + ..
T Consensus 363 ~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 442 (987)
T PRK09782 363 RLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL 442 (987)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence 0000111111223345555555555544321 0 01
Q ss_pred ------------------------------c--ChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 011249 243 ------------------------------I--SEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMH 290 (490)
Q Consensus 243 ------------------------------p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 290 (490)
+ +...+..+..++.. ++.++|...+....... |+......+...+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al 519 (987)
T PRK09782 443 PLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQA 519 (987)
T ss_pred ccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHH
Confidence 1 22333334433333 55566666666555443 3433333445555
Q ss_pred HhcCChHHHHHHHhcccC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHhcCCCChHHHHH
Q 011249 291 SKCGYLDLAWREFSRIKN--KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQ-VTFIGVLTACSHGGLVEDGCK 367 (490)
Q Consensus 291 ~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~ 367 (490)
...|++++|...|+++.. ++...+..+..++.+.|++++|...+++..+. .|+. ..+..+.......|++++|..
T Consensus 520 ~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 520 YQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHH
Confidence 678888888888887654 44455666777788888999999998888875 3433 333344444556699999999
Q ss_pred HHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCC
Q 011249 368 QFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGP 445 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 445 (490)
.+++..+ ..|+...+..+..++.+.|++++|+..+++.. .+.+...+..+..++...|++++|+..++++++..|
T Consensus 598 ~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 598 DLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 9999976 34567888889999999999999999998877 444667888888889999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 446 EKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
+++.++..++.++...|++++|+..+++..+..+
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999886654
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=6.4e-22 Score=186.74 Aligned_cols=297 Identities=16% Similarity=0.139 Sum_probs=175.8
Q ss_pred HHHHhCCChHHHHHHHHHhccC---CchhHHHHHHHHHhcCChhHHHHHHhhcCC-CC------HHhHHHHHHHHHhcCC
Q 011249 156 AGYANCGNMKAAKEFYDRMTEK---NSVTWVAMIAGYGKCGEVREAKKVFDEISE-PD------ASCWAAMTVCYVQNGY 225 (490)
Q Consensus 156 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~------~~~~~~l~~~~~~~g~ 225 (490)
..+...|++++|+..|+++.+. +..++..++..+...|++++|..+++.+.. ++ ...+..++..|.+.|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566666666666666643 233455555555555555555555555443 11 1234455555555555
Q ss_pred hHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 011249 226 AKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSR 305 (490)
Q Consensus 226 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 305 (490)
+++|+.+|+++.+.. +++..++..++..+.+.|++++|...++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 555555555555432 22344455555555555555555555555544331111000
Q ss_pred ccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchH
Q 011249 306 IKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPN-QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEH 384 (490)
Q Consensus 306 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 384 (490)
....+..++..+...|++++|...++++.+. .|+ ...+..+...+...|++++|.++++++... ........
T Consensus 179 ----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~ 251 (389)
T PRK11788 179 ----IAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEV 251 (389)
T ss_pred ----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHH
Confidence 0112344555666777777777777777663 233 345666667777777777777777777653 21112345
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhcc-CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH-h--
Q 011249 385 LTCMVDLLGRSGQLEKAHSLIMDYK-DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYA-S-- 460 (490)
Q Consensus 385 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~-- 460 (490)
+..++.+|...|++++|.+.++++. ..|+...+..++..+...|++++|..+++++++..|+++... .+...+. .
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~-~l~~~~~~~~~ 330 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH-RLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH-HHHHHhhhccC
Confidence 6667777777788888887777765 445656667777777888888888888888888888766433 3333333 2
Q ss_pred cCCcchHHHHHHHhhhcccccCCC
Q 011249 461 MGKWKDSEIVKMMISETEKKKSPG 484 (490)
Q Consensus 461 ~g~~~~A~~~~~~~~~~~~~~~~~ 484 (490)
.|+.+++..++++|.+++++++|.
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCC
Confidence 457788888888888877777776
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=7.4e-20 Score=185.05 Aligned_cols=455 Identities=11% Similarity=0.013 Sum_probs=316.1
Q ss_pred hhhhchhhHHHHHHHHhhhcCCC-CchhHhHHHHHHHH--------HhcCCCCHHHHHHHhccCCCC--CCceehHHHHH
Q 011249 8 PRSKTFNQLKQVHSYLLKTLTKP-HDQYHYYAQFLIRL--------LQLPGDNLSYARQVFDQIPKC--KTQFLWTSLIR 76 (490)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~--------~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~l~~ 76 (490)
...+++..+..+++.+.+ .. .++. ++..+... |.+.+. ..++++ .+...| ++....-.+..
T Consensus 119 a~i~~~~kA~~~ye~l~~---~~P~n~~--~~~~la~~~~~~~~l~y~q~eq-Al~AL~--lr~~~~~~~~~vL~L~~~r 190 (987)
T PRK09782 119 AAIPVEVKSVTTVEELLA---QQKACDA--VPTLRCRSEVGQNALRLAQLPV-ARAQLN--DATFAASPEGKTLRTDLLQ 190 (987)
T ss_pred HHhccChhHHHHHHHHHH---hCCCChh--HHHHHHHHhhccchhhhhhHHH-HHHHHH--HhhhCCCCCcHHHHHHHHH
Confidence 334677777788888877 66 6677 77777776 788777 777777 333333 34123444488
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCC-----------CCh------HHHHHHHHHhcCCHHHHHHH
Q 011249 77 NHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARV-----------PSL------LEAVICGYTKIGLMDDAQRL 139 (490)
Q Consensus 77 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----------~~~------~~~l~~~~~~~g~~~~A~~~ 139 (490)
.|.+.|++++|+.++.++.+.+..... -...+-.++... +.. ..+++..|.+.|+.++|.++
T Consensus 191 lY~~l~dw~~Ai~lL~~L~k~~pl~~~-~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 191 RAIYLKQWSQADTLYNEARQQNTLSAA-ERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred HHHHHhCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999998543322 122222222110 111 14677788888888888888
Q ss_pred HhhcCC-----CCHhH------------------------------HHHHHHHHHhCCChHHHHHHH-------------
Q 011249 140 FDSMAE-----RNVIS------------------------------WSAMVAGYANCGNMKAAKEFY------------- 171 (490)
Q Consensus 140 ~~~~~~-----~~~~~------------------------------~~~l~~~~~~~~~~~~a~~~~------------- 171 (490)
++++.. |+..+ .-.++..+.+.++++.+.++.
T Consensus 270 L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 349 (987)
T PRK09782 270 LIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERY 349 (987)
T ss_pred HHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHH
Confidence 887752 11111 111133334444444333332
Q ss_pred --------------------------------------------------HHhcc-C-C----chhHHHHHHHHHhcCC-
Q 011249 172 --------------------------------------------------DRMTE-K-N----SVTWVAMIAGYGKCGE- 194 (490)
Q Consensus 172 --------------------------------------------------~~~~~-~-~----~~~~~~l~~~~~~~~~- 194 (490)
+.... + + .....-++..|.+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 429 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYL 429 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcc
Confidence 11111 0 0 0011234444444443
Q ss_pred --hhHHHHH-------------------------HhhcCC---C--CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcc
Q 011249 195 --VREAKKV-------------------------FDEISE---P--DASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVR 242 (490)
Q Consensus 195 --~~~A~~~-------------------------~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 242 (490)
..++..+ +..... + +...|..+..++.. +++++|+..+.+.... .
T Consensus 430 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~ 506 (987)
T PRK09782 430 ATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--Q 506 (987)
T ss_pred cchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--C
Confidence 1122111 011110 2 45566777777766 7888899988887765 4
Q ss_pred cChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHH---HHHH
Q 011249 243 ISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYS---SMIT 319 (490)
Q Consensus 243 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~l~~ 319 (490)
|+......+..++...|++++|...++.+... +|+...+..+..++.+.|++++|...+++..+.++.... .+..
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~ 584 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHA 584 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 66655555566667999999999999998665 344455667788899999999999999988774333232 3333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChH
Q 011249 320 AFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLE 399 (490)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 399 (490)
.....|++++|...+++..+ ..|+...+..+..++.+.|+.++|...+++... ..|.+...+..+..++...|+++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHH
Confidence 44456999999999999998 467888899999999999999999999999987 45556778888999999999999
Q ss_pred HHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 400 KAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 400 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
+|+..+++.. .+.++..+..+..++...|++++|+..++++++..|++..+....++...+..+++.|.+.+++....
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999998876 34567789999999999999999999999999999999999999999999999999999988876655
Q ss_pred ccc
Q 011249 478 EKK 480 (490)
Q Consensus 478 ~~~ 480 (490)
++.
T Consensus 741 ~~~ 743 (987)
T PRK09782 741 SFD 743 (987)
T ss_pred Ccc
Confidence 443
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.3e-20 Score=186.41 Aligned_cols=317 Identities=10% Similarity=-0.033 Sum_probs=260.9
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHhcc--C-CchhHHHHHHHHHhcCChhHHH
Q 011249 126 GYTKIGLMDDAQRLFDSMAE--R-NVISWSAMVAGYANCGNMKAAKEFYDRMTE--K-NSVTWVAMIAGYGKCGEVREAK 199 (490)
Q Consensus 126 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~ 199 (490)
.+.+.|++++|..+++.... | +...+..++.+....|++++|+..|+++.+ | +...+..+...+...|++++|.
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 47889999999999998875 3 556677777888889999999999999985 4 6678889999999999999999
Q ss_pred HHHhhcCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCC
Q 011249 200 KVFDEISE---PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCC 276 (490)
Q Consensus 200 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 276 (490)
..+++..+ .+...+..++.++...|++++|...++.+......+ ...+..+ ..+...|++++|...++.+.+...
T Consensus 131 ~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 131 DLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999875 456788899999999999999999999887664332 2333333 347889999999999999887753
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCc-HHH
Q 011249 277 DRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQE----ALDMFLKMRNEGIEPN-QVT 348 (490)
Q Consensus 277 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~p~-~~~ 348 (490)
.++......+..++...|++++|+..|+++.. .+...+..+...+...|++++ |...++++.+. .|+ ...
T Consensus 209 ~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a 286 (656)
T PRK15174 209 LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRI 286 (656)
T ss_pred CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHH
Confidence 44455555667888999999999999998876 356788889999999999986 89999999984 554 558
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCCChh-hHHHHHHHHhh
Q 011249 349 FIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCDAG-TWGALLGACKV 426 (490)
Q Consensus 349 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~ 426 (490)
+..+...+...|++++|...++++.+ ..+.+...+..+..++.+.|++++|...|+++. ..|+.. .+..+..++..
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ 364 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 88889999999999999999999987 334456677788999999999999999998877 445543 34445677889
Q ss_pred hCChHHHHHHHHHHHhcCCCCC
Q 011249 427 HVNAELGEIAARHLLELGPEKT 448 (490)
Q Consensus 427 ~g~~~~a~~~~~~~~~~~p~~~ 448 (490)
.|+.++|...|+++.+..|++.
T Consensus 365 ~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 365 AGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999998864
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=2.7e-20 Score=184.16 Aligned_cols=348 Identities=10% Similarity=-0.050 Sum_probs=282.4
Q ss_pred HHhcCCHHHHHHHHhhcCCC------CHhHHHHHHHHHHhCCChHHHHHHHHHhcc--C-CchhHHHHHHHHHhcCChhH
Q 011249 127 YTKIGLMDDAQRLFDSMAER------NVISWSAMVAGYANCGNMKAAKEFYDRMTE--K-NSVTWVAMIAGYGKCGEVRE 197 (490)
Q Consensus 127 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 197 (490)
+.+..+++.---.|....+. +......++..+.+.|++++|..+++.... | +......++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 34556676666666655541 233455567888999999999999999885 3 56677777888888999999
Q ss_pred HHHHHhhcCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhc
Q 011249 198 AKKVFDEISE---PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEG 274 (490)
Q Consensus 198 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 274 (490)
|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 9999999875 456788889999999999999999999999763 225677888999999999999999999988776
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH
Q 011249 275 CCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNK----DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFI 350 (490)
Q Consensus 275 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 350 (490)
. +.+...+..+ ..+...|++++|...++.+.+. +...+..+..++...|++++|+..++++.+.. +.+...+.
T Consensus 174 ~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 174 V-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred C-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 5 3334444333 3478899999999999987653 23344556778899999999999999999853 23456777
Q ss_pred HHHHHhcCCCChHH----HHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHH
Q 011249 351 GVLTACSHGGLVED----GCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGAC 424 (490)
Q Consensus 351 ~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 424 (490)
.+...+...|++++ |...++++.+ ..|.+...+..+...+...|++++|...+++.. .+.+...+..+..++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88889999999986 8999999987 345567788899999999999999999998877 344566788888999
Q ss_pred hhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccc
Q 011249 425 KVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKK 480 (490)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 480 (490)
...|++++|+..++++.+.+|+++..+..++.++...|++++|...+++..+..++
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 99999999999999999999998877777888999999999999999998877554
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=4.9e-21 Score=180.73 Aligned_cols=301 Identities=14% Similarity=0.071 Sum_probs=159.3
Q ss_pred HHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHH
Q 011249 44 LLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLE 121 (490)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 121 (490)
.+...|+ +++|...|+++. .|+....+..+...+...|++++|..+++.+...+..++....... .
T Consensus 44 ~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~-----------~ 111 (389)
T PRK11788 44 NFLLNEQ-PDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL-----------Q 111 (389)
T ss_pred HHHhcCC-hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH-----------H
Confidence 3344455 555666555554 2333234555555555555666666555555543211111100000 1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHH
Q 011249 122 AVICGYTKIGLMDDAQRLFDSMAE---RNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREA 198 (490)
Q Consensus 122 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 198 (490)
.++..|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++++.+.++.....
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------------- 177 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-------------- 177 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH--------------
Confidence 122334555555555555555543 233444455555555555555555555444321100000
Q ss_pred HHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCC
Q 011249 199 KKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDR 278 (490)
Q Consensus 199 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 278 (490)
.....+..++..+.+.|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+...
T Consensus 178 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 178 ---------EIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred ---------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 001123445555666666666666666666542 1233455556666666666666666666666543222
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcccC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 011249 279 TNYVSNALIHMHSKCGYLDLAWREFSRIKN--KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTAC 356 (490)
Q Consensus 279 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 356 (490)
...+++.++.+|...|++++|...++++.+ |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~ 325 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh
Confidence 234455666666666777777666666554 45455566667777777777777777777663 56666666666554
Q ss_pred cC---CCChHHHHHHHHHHHHHcCCCCCch
Q 011249 357 SH---GGLVEDGCKQFELMTRVFGIKPLTE 383 (490)
Q Consensus 357 ~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 383 (490)
.. .|+.+++..+++++.++ ++.|++.
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred hhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 42 44677777777777764 5555555
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=1.1e-19 Score=183.57 Aligned_cols=393 Identities=8% Similarity=-0.029 Sum_probs=209.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhc
Q 011249 37 YAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACA 114 (490)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 114 (490)
...-.+.+....|+ .++|++++++.. .|.....+..+...+...|++++|.++|++..+. .|+.......+
T Consensus 17 ~~~d~~~ia~~~g~-~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l---- 89 (765)
T PRK10049 17 QIADWLQIALWAGQ-DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGL---- 89 (765)
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH----
Confidence 44566667777777 788888877765 2333234777777778888888888888877765 44433322222
Q ss_pred CCCChHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHhccC---CchhHHHHHHH
Q 011249 115 RVPSLLEAVICGYTKIGLMDDAQRLFDSMAE--R-NVISWSAMVAGYANCGNMKAAKEFYDRMTEK---NSVTWVAMIAG 188 (490)
Q Consensus 115 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~ 188 (490)
+..+...|+.++|+..++++.+ | +.. +..+..++...|+.++|+..++++.+. +...+..++.+
T Consensus 90 ---------a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~ 159 (765)
T PRK10049 90 ---------ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQA 159 (765)
T ss_pred ---------HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2236777888888888877764 3 445 667777777788888888888777753 44455666677
Q ss_pred HHhcCChhHHHHHHhhcCC-CCH------HhHHHHHHHHHh-----cCCh---HHHHHHHHHHHHc-CcccChh-hHH--
Q 011249 189 YGKCGEVREAKKVFDEISE-PDA------SCWAAMTVCYVQ-----NGYA---KAAIEMYKVMRQE-NVRISEV-AMV-- 249 (490)
Q Consensus 189 ~~~~~~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~~-----~g~~---~~A~~~~~~~~~~-~~~p~~~-~~~-- 249 (490)
+...+..+.|++.++.... |+. .....++..... .+++ ++|++.++.+.+. ...|+.. .+.
T Consensus 160 l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred HHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 7777777777777776665 211 011122222211 1223 5566666666542 1122221 111
Q ss_pred --HHHHHHhccCChHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHhcCChHHHHHHHhcccCCC-------hhHHHHHHH
Q 011249 250 --GAISACTQLGDVEMAAILAKHVDEGCCD-RTNYVSNALIHMHSKCGYLDLAWREFSRIKNKD-------VISYSSMIT 319 (490)
Q Consensus 250 --~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~ 319 (490)
..+.++...|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++...+ ......+..
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 1122334456666666666666555421 111 11123455566666666666666554311 122334444
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-----------CCcH---HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHH
Q 011249 320 AFADHGKSQEALDMFLKMRNEGI-----------EPNQ---VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHL 385 (490)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~-----------~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 385 (490)
++...|++++|..+++++.+... .|+. ..+..+...+...|+.++|++.++++.. ..|.+...+
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~ 396 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLR 396 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 55556666666666666554310 0111 1223334444455555555555555544 233334444
Q ss_pred HHHHHHHhhcCChHHHHHHHHhcc-CCC-ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCc
Q 011249 386 TCMVDLLGRSGQLEKAHSLIMDYK-DFC-DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTG 449 (490)
Q Consensus 386 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 449 (490)
..++..+...|++++|++.+++.. ..| +...+...+..+...|++++|+.+++++++..|+++.
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 555555555555555555555444 222 2334444444445555555555555555555555443
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=6.3e-19 Score=178.19 Aligned_cols=391 Identities=8% Similarity=0.022 Sum_probs=295.5
Q ss_pred ehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC--C-
Q 011249 70 LWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE--R- 146 (490)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~- 146 (490)
--.-.+......|+.++|++++.+..... +.+...+..+-. .+.+.|++++|..++++..+ |
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~--------------~~~~~g~~~~A~~~~~~al~~~P~ 81 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAV--------------AYRNLKQWQNSLTLWQKALSLEPQ 81 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH--------------HHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34455666788999999999999987632 223333433333 47889999999999999754 3
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHhcc--C-CchhHHHHHHHHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHH
Q 011249 147 NVISWSAMVAGYANCGNMKAAKEFYDRMTE--K-NSVTWVAMIAGYGKCGEVREAKKVFDEISE---PDASCWAAMTVCY 220 (490)
Q Consensus 147 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 220 (490)
+...+..++..+...|++++|+..++++.+ | +.. +..+..++...|+.++|+..++++.+ .+...+..+..++
T Consensus 82 ~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l 160 (765)
T PRK10049 82 NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQAL 160 (765)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 567788889999999999999999999985 3 555 88889999999999999999999876 3556677788888
Q ss_pred HhcCChHHHHHHHHHHHHcCcccCh------hhHHHHHHHHh-----ccCCh---HHHHHHHHHHHhc-CCCCchh-HH-
Q 011249 221 VQNGYAKAAIEMYKVMRQENVRISE------VAMVGAISACT-----QLGDV---EMAAILAKHVDEG-CCDRTNY-VS- 283 (490)
Q Consensus 221 ~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~- 283 (490)
...+..++|++.++.... .|+. .....++.... ..+++ ++|...++.+.+. ...|+.. .+
T Consensus 161 ~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 161 RNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred HHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 899999999999886654 2221 11222233222 22334 7788888888754 1222221 11
Q ss_pred ---HHHHHHHHhcCChHHHHHHHhcccCCC---h-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---cHHHHHHHH
Q 011249 284 ---NALIHMHSKCGYLDLAWREFSRIKNKD---V-ISYSSMITAFADHGKSQEALDMFLKMRNEGIEP---NQVTFIGVL 353 (490)
Q Consensus 284 ---~~l~~~~~~~~~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~ 353 (490)
...+.++...|++++|+..|+.+.+.+ + .....+..+|...|++++|+..|+++.+..... .......+.
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 111334567799999999999988732 2 122335778999999999999999988642111 134566677
Q ss_pred HHhcCCCChHHHHHHHHHHHHHcC----------CCCC---chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHH
Q 011249 354 TACSHGGLVEDGCKQFELMTRVFG----------IKPL---TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWG 418 (490)
Q Consensus 354 ~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 418 (490)
.++...|++++|...++.+..... ..|+ ...+..++..+...|++++|++.++++. .+.+...+.
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~ 397 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRI 397 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 788999999999999999987310 0122 2345677888999999999999999877 455677889
Q ss_pred HHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 419 ALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
.++..+...|++++|++.++++++.+|+++.++..++..+...|++++|+.+++++.+..+
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999987644
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.7e-20 Score=174.63 Aligned_cols=443 Identities=12% Similarity=0.075 Sum_probs=336.0
Q ss_pred hhHHHHHHHHhhhcCCCCchhHhHHHHHHHHHhcCCCCHHHHHHHhccCCC-----CCCceehHHHHHHHHhcCChhHHH
Q 011249 14 NQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPK-----CKTQFLWTSLIRNHVLHAHFRQSI 88 (490)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~ 88 (490)
..+.++.....+ +.+.||+ +.+.|.+-|--.++ ...++.+...+.. +-.+.+|..+..++...|++++|.
T Consensus 253 ~~~~~ll~~ay~--~n~~nP~--~l~~LAn~fyfK~d-y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 253 KKGVQLLQRAYK--ENNENPV--ALNHLANHFYFKKD-YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred HHHHHHHHHHHh--hcCCCcH--HHHHHHHHHhhccc-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 345555555554 1338999 99999999999999 9999998877642 223356999999999999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHhHHHHHHHHHHhCC---
Q 011249 89 LLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE--R-NVISWSAMVAGYANCG--- 162 (490)
Q Consensus 89 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~--- 162 (490)
..|-+..+. .|+..+++.+ .+..+|.+.|+.+.+...|+.+.+ | +..+...|...|...+
T Consensus 328 ~yY~~s~k~--~~d~~~l~~~------------GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~ 393 (1018)
T KOG2002|consen 328 KYYMESLKA--DNDNFVLPLV------------GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQ 393 (1018)
T ss_pred HHHHHHHcc--CCCCcccccc------------chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhh
Confidence 999776654 5666444321 255679999999999999999986 4 4556666777776664
Q ss_pred -ChHHHHHHHHHhccC---CchhHHHHHHHHHhcCChhHHHHHHhhcC--------CCCHHhHHHHHHHHHhcCChHHHH
Q 011249 163 -NMKAAKEFYDRMTEK---NSVTWVAMIAGYGKCGEVREAKKVFDEIS--------EPDASCWAAMTVCYVQNGYAKAAI 230 (490)
Q Consensus 163 -~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~ 230 (490)
..+.|..++.+..++ |...|..+..++....-+.. +.+|..+. ...+...|.+...+...|+++.|.
T Consensus 394 ~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 394 EKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 567788888887765 67788888877766544333 44443332 367788999999999999999999
Q ss_pred HHHHHHHHc---CcccCh------hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 011249 231 EMYKVMRQE---NVRISE------VAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWR 301 (490)
Q Consensus 231 ~~~~~~~~~---~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 301 (490)
..|.+.... ...++. .+-..+....-..++.+.|.+.|..+.+.. |.=+..|.-++.+....++..+|..
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHH
Confidence 999988754 122232 244556677778889999999999998874 3334445555544455578889999
Q ss_pred HHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHHHHHHHHHHhcC------------CCChHHH
Q 011249 302 EFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEG-IEPNQVTFIGVLTACSH------------GGLVEDG 365 (490)
Q Consensus 302 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~------------~g~~~~a 365 (490)
.++++.. .++..+..+...+.+...+..|.+-|+...+.- ..+|.+....|.+.|.. .+..++|
T Consensus 552 ~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 552 LLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 9998876 577888888889999999999998777776532 23577777777765532 2356788
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhc
Q 011249 366 CKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLEL 443 (490)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (490)
+++|.++.+ ..|.+...-+.+.-+++..|++.+|..+|.++. ......+|..+..+|...|++-.|++.|+...+.
T Consensus 632 lq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 632 LQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887 566777888889999999999999999999888 2345678999999999999999999999999885
Q ss_pred C--CCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 444 G--PEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 444 ~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
. .+++.+...|++++.+.|++.+|.+.........+
T Consensus 710 f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 710 FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 4 46788999999999999999999999887765544
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.3e-18 Score=172.86 Aligned_cols=387 Identities=10% Similarity=-0.006 Sum_probs=269.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-hhHHHHHHHh
Q 011249 37 YAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSG-FTFSSVLNAC 113 (490)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~ 113 (490)
.+......+.+.|+ +++|+..|++.. .|+. ..|..+..+|.+.|++++|+..++...+. .|+. ..+..+-.
T Consensus 129 ~~k~~G~~~~~~~~-~~~Ai~~y~~al~~~p~~-~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~-- 202 (615)
T TIGR00990 129 KLKEKGNKAYRNKD-FNKAIKLYSKAIECKPDP-VYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRAN-- 202 (615)
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHH--
Confidence 45566777777787 888888887764 4554 66777777788888888888888877765 3433 23333222
Q ss_pred cCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCC---CHhHHHHHHHHHHhCCChHHHHHH--------------------
Q 011249 114 ARVPSLLEAVICGYTKIGLMDDAQRLFDSMAER---NVISWSAMVAGYANCGNMKAAKEF-------------------- 170 (490)
Q Consensus 114 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~-------------------- 170 (490)
+|...|++++|+..|..+... +......++..+........+...
T Consensus 203 ------------a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 270 (615)
T TIGR00990 203 ------------AYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQS 270 (615)
T ss_pred ------------HHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 366777777777666544321 111111111100000000111111
Q ss_pred ---------HHHhccCCc---hhHHHHHHHH---HhcCChhHHHHHHhhcCC------CCHHhHHHHHHHHHhcCChHHH
Q 011249 171 ---------YDRMTEKNS---VTWVAMIAGY---GKCGEVREAKKVFDEISE------PDASCWAAMTVCYVQNGYAKAA 229 (490)
Q Consensus 171 ---------~~~~~~~~~---~~~~~l~~~~---~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A 229 (490)
+....+.+. ..+..+...+ ...+++++|.+.|+...+ .....|+.+..++...|++++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA 350 (615)
T TIGR00990 271 FRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEA 350 (615)
T ss_pred ccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHH
Confidence 111111011 1111111111 224678999999988764 2345788888999999999999
Q ss_pred HHHHHHHHHcCcccC-hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC
Q 011249 230 IEMYKVMRQENVRIS-EVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN 308 (490)
Q Consensus 230 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 308 (490)
+..|++..... |+ ...|..+..++...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+
T Consensus 351 ~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 351 LADLSKSIELD--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred HHHHHHHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998763 44 5678888889999999999999999998875 66788889999999999999999999999876
Q ss_pred --C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC-ch
Q 011249 309 --K-DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL-TE 383 (490)
Q Consensus 309 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~ 383 (490)
| +...+..+..++.+.|++++|+..|++..+. .| +...+..+...+...|++++|...|++.... .|+ ..
T Consensus 428 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~ 502 (615)
T TIGR00990 428 LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKP 502 (615)
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCcccc
Confidence 3 5667888888999999999999999999874 44 4668888899999999999999999998863 222 11
Q ss_pred H-------HHHHHHHHhhcCChHHHHHHHHhcc-CCC-ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCc
Q 011249 384 H-------LTCMVDLLGRSGQLEKAHSLIMDYK-DFC-DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTG 449 (490)
Q Consensus 384 ~-------~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 449 (490)
. ++.....+...|++++|.+++++.. ..| +...+..++..+...|++++|++.|+++.++.+....
T Consensus 503 ~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 503 MYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 1 1222233445799999999998865 334 4557888999999999999999999999998776443
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=3.1e-17 Score=162.88 Aligned_cols=417 Identities=9% Similarity=-0.017 Sum_probs=256.5
Q ss_pred hhhchhhHHHHHHHHhhhcCCCCc--hhHhHHHHHHHHHhcCCCCHHHHHHHhccCCCCCCceehHHH--HHHHHhcCCh
Q 011249 9 RSKTFNQLKQVHSYLLKTLTKPHD--QYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLWTSL--IRNHVLHAHF 84 (490)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~ 84 (490)
..|++..|...++++.+ ..|+ +. ++ .++.++...|+ .++|+..+++...|++...+..+ ...+...|++
T Consensus 46 r~Gd~~~Al~~L~qaL~---~~P~~~~a--v~-dll~l~~~~G~-~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 46 RAGDTAPVLDYLQEESK---AGPLQSGQ--VD-DWLQIAGWAGR-DQEVIDVYERYQSSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred hCCCHHHHHHHHHHHHh---hCccchhh--HH-HHHHHHHHcCC-cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 44666667766666665 4433 23 33 77777777777 78888888877766552333333 3356666888
Q ss_pred hHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhCC
Q 011249 85 RQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE--RNVISWSAMVAGYANCG 162 (490)
Q Consensus 85 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~ 162 (490)
++|+++|+++.+. .|+....... ++..+...++.++|++.++++.+ |+...+..++..+...+
T Consensus 119 d~Aiely~kaL~~--dP~n~~~l~g-------------La~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 119 DQALALWQSSLKK--DPTNPDLISG-------------MIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHHHHhh--CCCCHHHHHH-------------HHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcc
Confidence 8888888887776 4443222111 22346777888888888887776 34334433333333345
Q ss_pred ChHHHHHHHHHhcc--C-CchhHHHHHHHHHhcCChhHHHHHHhhcCC-CCHHhH--------HHHHHHH-----HhcCC
Q 011249 163 NMKAAKEFYDRMTE--K-NSVTWVAMIAGYGKCGEVREAKKVFDEISE-PDASCW--------AAMTVCY-----VQNGY 225 (490)
Q Consensus 163 ~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~--------~~l~~~~-----~~~g~ 225 (490)
+..+|++.++++.+ | +...+..+..+..+.|-...|.++..+-+. -+...+ ..+++.- ...++
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 55557888877774 3 555667777777777777777777766553 111110 1111110 01122
Q ss_pred h---HHHHHHHHHHHH-cCcccChh-----hHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCh
Q 011249 226 A---KAAIEMYKVMRQ-ENVRISEV-----AMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYL 296 (490)
Q Consensus 226 ~---~~A~~~~~~~~~-~~~~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 296 (490)
+ +.|+.-++.+.. .+..|... ...-.+-++...|+..++++.|+.+...+.+....+-.++.++|...+++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 2 334445555443 12223221 12233445667777888888888887776555556667777888888888
Q ss_pred HHHHHHHhcccCC---------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCcH--H-HHHHHH
Q 011249 297 DLAWREFSRIKNK---------DVISYSSMITAFADHGKSQEALDMFLKMRNEGI-----------EPNQ--V-TFIGVL 353 (490)
Q Consensus 297 ~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~~--~-~~~~l~ 353 (490)
++|+.+|+.+..+ +......|.-+|...+++++|..+++++.+... .|++ . .+..++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 8888888776441 222245667777778888888888887776311 1222 1 333445
Q ss_pred HHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChH
Q 011249 354 TACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAE 431 (490)
Q Consensus 354 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 431 (490)
..+...|+..+|++.++++.. .-|-|......+.+.+...|.+.+|.+.++... .+.+..+....+.++...|++.
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHH
Confidence 556677788888888888766 456667777777777888888888888776654 3334556666777777778888
Q ss_pred HHHHHHHHHHhcCCCCCc
Q 011249 432 LGEIAARHLLELGPEKTG 449 (490)
Q Consensus 432 ~a~~~~~~~~~~~p~~~~ 449 (490)
+|..+.+.+.+..|+++.
T Consensus 502 ~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 502 QMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHHHhhCCCchh
Confidence 888888888888887764
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=3.4e-17 Score=162.61 Aligned_cols=424 Identities=10% Similarity=0.026 Sum_probs=306.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHhccCCC--CCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCC
Q 011249 39 QFLIRLLQLPGDNLSYARQVFDQIPK--CKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARV 116 (490)
Q Consensus 39 ~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 116 (490)
..-+-...+.|+ ++.|+..|++..+ |+.......++..+...|+.++|+..+++.. .|+...+..++.
T Consensus 38 y~~aii~~r~Gd-~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~lla----- 107 (822)
T PRK14574 38 YDSLIIRARAGD-TAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLAS----- 107 (822)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHH-----
Confidence 344445568888 9999999999874 3321123388888888899999999999887 454444544432
Q ss_pred CChHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHhccCCch--hHHHHHHHHHh
Q 011249 117 PSLLEAVICGYTKIGLMDDAQRLFDSMAE--R-NVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSV--TWVAMIAGYGK 191 (490)
Q Consensus 117 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~ 191 (490)
+...|...|++++|+++|+++.+ | +...+..++..+...++.++|++.++++...++. .+..++..+..
T Consensus 108 ------lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~ 181 (822)
T PRK14574 108 ------AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRA 181 (822)
T ss_pred ------HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHh
Confidence 23357888999999999999986 3 5566777888899999999999999999875443 44444444444
Q ss_pred cCChhHHHHHHhhcCC--C-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhH------HHHHHHH-----hc
Q 011249 192 CGEVREAKKVFDEISE--P-DASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAM------VGAISAC-----TQ 257 (490)
Q Consensus 192 ~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~------~~l~~~~-----~~ 257 (490)
.++..+|++.++++.+ | +...+..+..+..+.|-...|+++.++-... +.+..... ...++-- ..
T Consensus 182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 5666669999998875 4 5677788889999999999988776653211 11111100 1111100 01
Q ss_pred cCCh---HHHHHHHHHHHhc-C-CCCchhHH----HHHHHHHHhcCChHHHHHHHhcccCC----ChhHHHHHHHHHHhc
Q 011249 258 LGDV---EMAAILAKHVDEG-C-CDRTNYVS----NALIHMHSKCGYLDLAWREFSRIKNK----DVISYSSMITAFADH 324 (490)
Q Consensus 258 ~g~~---~~a~~~~~~~~~~-~-~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~ 324 (490)
..++ +.|..-++.+... + .|+....| .-.+-++...|++.++++.|+.+..+ ...+-..+.++|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 2233 3344444444432 1 12222222 22355678889999999999999852 345677889999999
Q ss_pred CChHHHHHHHHHHHHcC-----CCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcC----------CCCC---chHHH
Q 011249 325 GKSQEALDMFLKMRNEG-----IEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFG----------IKPL---TEHLT 386 (490)
Q Consensus 325 ~~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~ 386 (490)
+++++|+.+|+.+.... ..++......|.-++...+++++|..+++.+.+... -.|+ ...+.
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 99999999999997643 122334457888999999999999999999987311 0122 22334
Q ss_pred HHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 011249 387 CMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKW 464 (490)
Q Consensus 387 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 464 (490)
.++..+.-.|++.+|++.++++. .+-|......+...+...|.+.+|++.++.+...+|++..+....+.++...|+|
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEW 500 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhH
Confidence 56778899999999999999987 4557889999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhhccc
Q 011249 465 KDSEIVKMMISETEK 479 (490)
Q Consensus 465 ~~A~~~~~~~~~~~~ 479 (490)
++|..+.+++.+..+
T Consensus 501 ~~A~~~~~~l~~~~P 515 (822)
T PRK14574 501 HQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHHHHHHhhCC
Confidence 999999988766544
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=3e-18 Score=149.83 Aligned_cols=412 Identities=16% Similarity=0.128 Sum_probs=282.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHhccCC----CCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011249 37 YAQFLIRLLQLPGDNLSYARQVFDQIP----KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNA 112 (490)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 112 (490)
++.-|..-|..+.. ..+|+..++-+. .|+....--.+...+.++..+.+|++.|+-....-...+-.+-.-+++-
T Consensus 203 vl~nlaqqy~~ndm-~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 203 VLFNLAQQYEANDM-TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHhhhhHH-HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 44455566777788 889999988775 2443233334556677889999999999877765222222232223322
Q ss_pred hcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHhcc----C---------
Q 011249 113 CARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE--RNVISWSAMVAGYANCGNMKAAKEFYDRMTE----K--------- 177 (490)
Q Consensus 113 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~--------- 177 (490)
+.-.+.+.|+++.|+..|+...+ ||..+--.|+-++..-|+.++..+.|.+|.. +
T Consensus 282 ----------igvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ 351 (840)
T KOG2003|consen 282 ----------IGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEK 351 (840)
T ss_pred ----------cCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCc
Confidence 22247888999999999998876 7777655666677778999999999999973 1
Q ss_pred -Cc--hhHH-----HHHHHHHhcC--ChhHHHHHHhhcC----CCCHH-------------hHH--------HHHHHHHh
Q 011249 178 -NS--VTWV-----AMIAGYGKCG--EVREAKKVFDEIS----EPDAS-------------CWA--------AMTVCYVQ 222 (490)
Q Consensus 178 -~~--~~~~-----~l~~~~~~~~--~~~~A~~~~~~~~----~~~~~-------------~~~--------~l~~~~~~ 222 (490)
|+ ...+ -.+.-.-+.+ +.++++-.--++. .|+-. .+. .-...+.+
T Consensus 352 ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk 431 (840)
T KOG2003|consen 352 DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK 431 (840)
T ss_pred CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence 11 1111 1111111111 1222221111111 12210 011 11234677
Q ss_pred cCChHHHHHHHHHHHHcCcccChhhHH------------------------------------HHHHHHhccCChHHHHH
Q 011249 223 NGYAKAAIEMYKVMRQENVRISEVAMV------------------------------------GAISACTQLGDVEMAAI 266 (490)
Q Consensus 223 ~g~~~~A~~~~~~~~~~~~~p~~~~~~------------------------------------~l~~~~~~~g~~~~a~~ 266 (490)
.|+++.|+++++-+.+..-+.-...-+ .-.+.....|++++|..
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHH
Confidence 788888888777765432221111111 11111123578888888
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011249 267 LAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIE 343 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 343 (490)
.|++.....-.-....|| +.-.+...|++++|+..|-++.. .+..+...+...|-...++.+|++++.+.... ++
T Consensus 512 ~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip 589 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IP 589 (840)
T ss_pred HHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CC
Confidence 888887655333333444 44567788999999999877654 67778888888898899999999999877663 44
Q ss_pred CcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCCChhhHHHHHH
Q 011249 344 PNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCDAGTWGALLG 422 (490)
Q Consensus 344 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~ 422 (490)
.|+..+..|...|-+.|+-..|.+.+-.--+ -++.+.++...|..-|....-+++|+.+|++.. .+|+..-|..++.
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmia 667 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIA 667 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 4677899999999999999999988776655 677888999999999999999999999998876 7899999998887
Q ss_pred HH-hhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 011249 423 AC-KVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGK 463 (490)
Q Consensus 423 ~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 463 (490)
.| .+.|++++|.++|+......|.+...+..|++++...|.
T Consensus 668 sc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 668 SCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 76 568999999999999999999999999999999888775
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.3e-16 Score=152.17 Aligned_cols=442 Identities=14% Similarity=0.111 Sum_probs=335.2
Q ss_pred hchhhHHHHHHHHhhhcCCC----CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCCC--CCC-ceehHHHHHHHHhcCC
Q 011249 11 KTFNQLKQVHSYLLKTLTKP----HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPK--CKT-QFLWTSLIRNHVLHAH 83 (490)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~~l~~~~~~~g~ 83 (490)
++++.+..+....++ .- --.. .+..+.++|...|+ +++|...|-+... ++. ...+--|.+.+...|+
T Consensus 284 ~dy~~v~~la~~ai~---~t~~~~~~ae--s~Y~~gRs~Ha~Gd-~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d 357 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIK---NTENKSIKAE--SFYQLGRSYHAQGD-FEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD 357 (1018)
T ss_pred ccHHHHHHHHHHHHH---hhhhhHHHHH--HHHHHHHHHHhhcc-HHHHHHHHHHHHccCCCCccccccchhHHHHHhch
Confidence 466666666666666 33 2223 47889999999999 9999999987753 333 2445668889999999
Q ss_pred hhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcC----CHHHHHHHHhhcCCC---CHhHHHHHHH
Q 011249 84 FRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIG----LMDDAQRLFDSMAER---NVISWSAMVA 156 (490)
Q Consensus 84 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~l~~ 156 (490)
.+.+...|+...+. .|+...-..++.. .|...+ ..+.|..++.+..++ |...|-.+..
T Consensus 358 le~s~~~fEkv~k~--~p~~~etm~iLG~-------------Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 358 LEESKFCFEKVLKQ--LPNNYETMKILGC-------------LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQ 422 (1018)
T ss_pred HHHHHHHHHHHHHh--CcchHHHHHHHHh-------------HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 99999999999886 6766655555554 244443 567888888888764 5667777777
Q ss_pred HHHhCCChHHHHHHHHHhc--------cCCchhHHHHHHHHHhcCChhHHHHHHhhcCC-------CCH------HhHHH
Q 011249 157 GYANCGNMKAAKEFYDRMT--------EKNSVTWVAMIAGYGKCGEVREAKKVFDEISE-------PDA------SCWAA 215 (490)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~------~~~~~ 215 (490)
.+... ++..++.+|..+. ..-+...|.+...+...|++++|...|..... ++. .+-..
T Consensus 423 l~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 66554 4444466666655 23677889999999999999999999987643 222 23445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCcccC-hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 011249 216 MTVCYVQNGYAKAAIEMYKVMRQENVRIS-EVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCG 294 (490)
Q Consensus 216 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 294 (490)
+..+.-..++++.|.+.|..+.+. .|. ...|..++......+...+|...++++.... ..++..+..+...|.+..
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhh
Confidence 777888889999999999999986 344 3455555544456688999999999998775 667777777888999999
Q ss_pred ChHHHHHHHhcccC-----CChhHHHHHHHHHHh------------cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhc
Q 011249 295 YLDLAWREFSRIKN-----KDVISYSSMITAFAD------------HGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACS 357 (490)
Q Consensus 295 ~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 357 (490)
.+..|.+-|+.+.+ +|+.+.-+|...|.+ .+..++|+++|.+.++.. +.|...-+.+.-+++
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLA 657 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhh
Confidence 99888886665543 466666666665542 345788999999988852 336667788888899
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc----CCCChhhHHHHHHHHhhhCChHHH
Q 011249 358 HGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK----DFCDAGTWGALLGACKVHVNAELG 433 (490)
Q Consensus 358 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a 433 (490)
..|++.+|..+|.++.+. ......+|-.+..+|..+|++..|+++|+... ...+..+...|..++...|.+.+|
T Consensus 658 ~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred hccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999984 44566788889999999999999999998765 446788999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhc-------------------CCcchHHHHHHHhhhcccc
Q 011249 434 EIAARHLLELGPEKTGNSALLANIYASM-------------------GKWKDSEIVKMMISETEKK 480 (490)
Q Consensus 434 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~ 480 (490)
.+.+..+....|.++.+..+++.+..+. +..+.|.++|..|...+-.
T Consensus 736 k~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 736 KEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999888877665532 3456777788777766543
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=2.1e-14 Score=131.56 Aligned_cols=434 Identities=12% Similarity=0.095 Sum_probs=330.3
Q ss_pred HhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCChhHHHHHHHHH----HhcCCCCCHhhHHHHHHHhcCCCC
Q 011249 45 LQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAHFRQSILLYAKM----HRLGVLTSGFTFSSVLNACARVPS 118 (490)
Q Consensus 45 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~ 118 (490)
|++... ++.|.+++++.. -|.....|-+-...--.+|+.+...+++.+. ...|+..+...|-.=-..|-..|.
T Consensus 416 larLet-YenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 416 LARLET-YENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHH-HHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 344444 666666666654 2333366666666666778888887777653 345655555444333333333332
Q ss_pred hH-----------------------HHHHHHHHhcCCHHHHHHHHhhcCC--C-CHhHHHHHHHHHHhCCChHHHHHHHH
Q 011249 119 LL-----------------------EAVICGYTKIGLMDDAQRLFDSMAE--R-NVISWSAMVAGYANCGNMKAAKEFYD 172 (490)
Q Consensus 119 ~~-----------------------~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 172 (490)
.. ..-...|.+.+.++-|+.+|....+ | +...|......--..|..+....+|+
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 22 3345556677777778888877776 3 55667777766667788888888888
Q ss_pred HhccC---CchhHHHHHHHHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChh
Q 011249 173 RMTEK---NSVTWVAMIAGYGKCGEVREAKKVFDEISE---PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEV 246 (490)
Q Consensus 173 ~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 246 (490)
+.... ....|...+.-+...||+..|..++..+.+ .+...|..-+.....+.++++|..+|.+.... .|+..
T Consensus 575 kav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeR 652 (913)
T KOG0495|consen 575 KAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTER 652 (913)
T ss_pred HHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcch
Confidence 88853 555667777778888999999999888765 46678888888889999999999999888764 56777
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--C-ChhHHHHHHHHHHh
Q 011249 247 AMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--K-DVISYSSMITAFAD 323 (490)
Q Consensus 247 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 323 (490)
.|.--+..---.++.++|.++++...+.- +.-...|..+.+.+.+.++++.|...|..-.+ | .+..|-.+...--+
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 77776766677889999999998888774 66677888889999999999999999988776 4 45578888878888
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHH
Q 011249 324 HGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHS 403 (490)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 403 (490)
.|++-.|..++++..-.+ +-+...|...|+.-.+.|..+.|..++.+..+ ..+.+...|..-|.+..+.++-..+..
T Consensus 732 ~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred hcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHH
Confidence 889999999999988753 33566888889988899999999999999988 577777788888888778777777777
Q ss_pred HHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccccCC
Q 011249 404 LIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSP 483 (490)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 483 (490)
.+++.. .|+.+...+...+.....+++|.+-|.++++.+|++-.++..+...+.+.|.-++-.+++++... .+|.-
T Consensus 809 ALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~h 884 (913)
T KOG0495|consen 809 ALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTH 884 (913)
T ss_pred HHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCC
Confidence 776654 67777888888888899999999999999999999999999999999999999999999988765 46777
Q ss_pred CccccC
Q 011249 484 GCSWIS 489 (490)
Q Consensus 484 ~~~~~~ 489 (490)
|..|..
T Consensus 885 G~~W~a 890 (913)
T KOG0495|consen 885 GELWQA 890 (913)
T ss_pred CcHHHH
Confidence 888864
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=1.4e-18 Score=155.30 Aligned_cols=258 Identities=14% Similarity=0.065 Sum_probs=115.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCccc-ChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc
Q 011249 215 AMTVCYVQNGYAKAAIEMYKVMRQENVRI-SEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKC 293 (490)
Q Consensus 215 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 293 (490)
.+...+.+.|++++|++++++.......| +...+..+...+...++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45777888899999999997655443223 34444555556677889999999999988776 4466677777777 688
Q ss_pred CChHHHHHHHhcccC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHHHHHHHHHHhcCCCChHHHHHHHH
Q 011249 294 GYLDLAWREFSRIKN--KDVISYSSMITAFADHGKSQEALDMFLKMRNEG-IEPNQVTFIGVLTACSHGGLVEDGCKQFE 370 (490)
Q Consensus 294 ~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 370 (490)
+++++|.++++..-+ +++..+..++..+...++++++..+++.+.... ..++...|..+...+.+.|+.++|++.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988877644 566777888888999999999999999987643 34566788888889999999999999999
Q ss_pred HHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCC
Q 011249 371 LMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKT 448 (490)
Q Consensus 371 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 448 (490)
++.+. .|.+......++..+...|+.+++.++++... .+.++..+..+..++...|+.++|...++++.+..|+|+
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 99883 44457788889999999999999888887776 356777889999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 449 GNSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
.....++.++...|+.++|.++.+++.+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887653
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=1.7e-15 Score=143.66 Aligned_cols=336 Identities=15% Similarity=0.131 Sum_probs=255.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhccC---CchhHHHHHHHHHhcCChhHHHHHHhhc---CCCCHHhHHHHHHHHHhcC
Q 011249 151 WSAMVAGYANCGNMKAAKEFYDRMTEK---NSVTWVAMIAGYGKCGEVREAKKVFDEI---SEPDASCWAAMTVCYVQNG 224 (490)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g 224 (490)
.-...+.....|++++|.+++.++++. +...|.+|..+|-..|+.+++...+-.+ .+.|...|..+.....+.|
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 333445555669999999999999864 6678999999999999999988776443 3467788999999999999
Q ss_pred ChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHH----HHHHHHHHhcCChHHHH
Q 011249 225 YAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVS----NALIHMHSKCGYLDLAW 300 (490)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~A~ 300 (490)
++++|.-.|.+.++.. +++...+-.-...|.+.|+...|...|.++.....+.|..-+ -..++.+...++-+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999998874 345556666667788899999999999998887643333222 22455666777778888
Q ss_pred HHHhcccC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHH--------------------------
Q 011249 301 REFSRIKN-----KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTF-------------------------- 349 (490)
Q Consensus 301 ~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-------------------------- 349 (490)
+.++.... -+...++.++..|.+...++.+......+......+|...+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 88877665 24457888888899999999998888887762222222111
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHcC--CCCCchHHHHHHHHHhhcCChHHHHHHHHhccCC---CChhhHHHHHHHH
Q 011249 350 IGVLTACSHGGLVEDGCKQFELMTRVFG--IKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDF---CDAGTWGALLGAC 424 (490)
Q Consensus 350 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~ 424 (490)
..++-++.+....+....+....... . ...+...|..+.++|...|++.+|+.+|..+... .+...|..+...+
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 12222334444444444555555553 5 3345778899999999999999999999998833 2456899999999
Q ss_pred hhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccccCCCcccc
Q 011249 425 KVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSWI 488 (490)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 488 (490)
...|.+++|.+.|++++...|++..+..+|+.++.+.|+.++|.+++..+...+.+..+++.|-
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 9999999999999999999999999999999999999999999999999886666666777773
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.4e-13 Score=121.62 Aligned_cols=438 Identities=11% Similarity=0.059 Sum_probs=327.0
Q ss_pred hchhhHHHHHHHHhhhcCCC-CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCChhHH
Q 011249 11 KTFNQLKQVHSYLLKTLTKP-HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAHFRQS 87 (490)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 87 (490)
++...|.++++.... .+ ++.. +|-..+++-.++.. +..|+.+|++.. -|.+...|..-+..--..|+...|
T Consensus 87 ~e~~RARSv~ERALd---vd~r~it--LWlkYae~Emknk~-vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 87 KEIQRARSVFERALD---VDYRNIT--LWLKYAEFEMKNKQ-VNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHHHHHHHHHHHHHh---cccccch--HHHHHHHHHHhhhh-HhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHH
Confidence 456678888888887 66 8888 99999999999999 999999999876 344435677777777778999999
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcC--CCCHhHHHHHHHHHHhCCChH
Q 011249 88 ILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMA--ERNVISWSAMVAGYANCGNMK 165 (490)
Q Consensus 88 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 165 (490)
.++|++..+. .|+...|.+.|+- =.+...++.|+.++++.. .|++.+|-....--.+.|+..
T Consensus 161 RqiferW~~w--~P~eqaW~sfI~f--------------ElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 161 RQIFERWMEW--EPDEQAWLSFIKF--------------ELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHHHHcC--CCcHHHHHHHHHH--------------HHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHH
Confidence 9999998876 8999999988874 577889999999999876 499999999999999999999
Q ss_pred HHHHHHHHhccC------CchhHHHHHHHHHhcCChhHHHHHHhhcCC-----CCHHhHHHHHHHHHhcCChHHHHH---
Q 011249 166 AAKEFYDRMTEK------NSVTWVAMIAGYGKCGEVREAKKVFDEISE-----PDASCWAAMTVCYVQNGYAKAAIE--- 231 (490)
Q Consensus 166 ~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~--- 231 (490)
.|.++|+...+- +...+.+...--.++..++.|.-+|.-... .....|..+...--+-|+......
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999988853 444566666666677788888888765543 224456656555555666544333
Q ss_pred -----HHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchh------HHH---HHHHHHHhcCChH
Q 011249 232 -----MYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNY------VSN---ALIHMHSKCGYLD 297 (490)
Q Consensus 232 -----~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~---~l~~~~~~~~~~~ 297 (490)
-|+.+.+.+ +.|-.++...+..-...|+.+...++|+.+...-.|.+.. +|. -.+-.-....+.+
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 244445443 3466777778888888899999999999998765332211 111 1112223567888
Q ss_pred HHHHHHhcccC--C-ChhH----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHH
Q 011249 298 LAWREFSRIKN--K-DVIS----YSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFE 370 (490)
Q Consensus 298 ~A~~~~~~~~~--~-~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 370 (490)
.+.++|+...+ | ...| |........++.+...|.+++...+ |.-|...+|...|..-.+.++++.+..+++
T Consensus 384 rtr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 384 RTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88888877665 3 2333 4444445567889999999998876 468999999999998889999999999999
Q ss_pred HHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCCh----hhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 371 LMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDA----GTWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 371 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
+..+ -.|-+..+|......-...|+.+.|..+|+-...+|.. ..|.+.|.--...|.+++|..+|+++++..+.
T Consensus 462 kfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 462 KFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 9987 44556788888888888899999999999888766643 35666666667889999999999999998776
Q ss_pred CCchHHHHHHHHH-----hcC-----------CcchHHHHHHHhhh
Q 011249 447 KTGNSALLANIYA-----SMG-----------KWKDSEIVKMMISE 476 (490)
Q Consensus 447 ~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 476 (490)
.. ++...+..-. +.| ....|..+|++...
T Consensus 540 ~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 540 VK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 44 5666654433 233 44567777776543
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.4e-13 Score=120.02 Aligned_cols=405 Identities=15% Similarity=0.112 Sum_probs=282.7
Q ss_pred eehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCC--ChH----HHHHHH---------HHhcCCH
Q 011249 69 FLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVP--SLL----EAVICG---------YTKIGLM 133 (490)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~----~~l~~~---------~~~~g~~ 133 (490)
.+=|.|+. +...|...++.-+|+.|.+.|++.+...-..++...+-.. +.. .-.+.. -.+.|.+
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 44556665 4467899999999999999999888877777666322111 110 000000 0011111
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccC----CchhHHHHHHHHHhcCChhHHHHHHhhcCC--
Q 011249 134 DDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEK----NSVTWVAMIAGYGKCGEVREAKKVFDEISE-- 207 (490)
Q Consensus 134 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 207 (490)
|. ++-+...++..+|..+|.++++-...+.|.++|++..+. +..+||.+|.+-.-..+ .+++.+|..
T Consensus 196 --Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqk 268 (625)
T KOG4422|consen 196 --AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQK 268 (625)
T ss_pred --HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhh
Confidence 22 444444457789999999999999999999999998854 77888988877554433 566666653
Q ss_pred --CCHHhHHHHHHHHHhcCChHH----HHHHHHHHHHcCcccChhhHHHHHHHHhccCChHH-HHHHHHHHHh----cCC
Q 011249 208 --PDASCWAAMTVCYVQNGYAKA----AIEMYKVMRQENVRISEVAMVGAISACTQLGDVEM-AAILAKHVDE----GCC 276 (490)
Q Consensus 208 --~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~----~~~ 276 (490)
||..|+|+++.+..+.|+++. |++++.+|++.|+.|+..+|..++..+.+.++..+ +..+..++.. ..+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 999999999999999998865 57788999999999999999999999988887644 4455555432 222
Q ss_pred ----CCchhHHHHHHHHHHhcCChHHHHHHHhcccC--------C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011249 277 ----DRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--------K---DVISYSSMITAFADHGKSQEALDMFLKMRNEG 341 (490)
Q Consensus 277 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 341 (490)
+.+...|...+..|.+..+.+-|.++-.-... + ...-|..+....++....+.-+..|+.|+-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 33456677788888899999888887665543 1 22346667778888889999999999999887
Q ss_pred CCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcC-Ch--------HH-----HHHHHHh
Q 011249 342 IEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSG-QL--------EK-----AHSLIMD 407 (490)
Q Consensus 342 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~-----A~~~~~~ 407 (490)
+-|+..+...++++....|.++-.-++|..+.. +|...+...-..+...+++.. +. .. |..+++.
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~ 507 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEA 507 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999888 465555444444444444433 11 11 1111111
Q ss_pred -------cc-CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcC---CCCCc--hHHHHHHHHHhcCCcchHHHHHHHh
Q 011249 408 -------YK-DFCDAGTWGALLGACKVHVNAELGEIAARHLLELG---PEKTG--NSALLANIYASMGKWKDSEIVKMMI 474 (490)
Q Consensus 408 -------~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (490)
+. ..-.+...+..+-.+.+.|..++|-+++.-..+.+ |..|. +...+...-.+.+....|..+++-|
T Consensus 508 ~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 508 YESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 23345566667777888999999999998886533 55443 2234455556667788888888888
Q ss_pred hhcccccC
Q 011249 475 SETEKKKS 482 (490)
Q Consensus 475 ~~~~~~~~ 482 (490)
...+..+.
T Consensus 588 ~~~n~~~~ 595 (625)
T KOG4422|consen 588 SAFNLPIC 595 (625)
T ss_pred HHcCchhh
Confidence 77665443
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=6e-15 Score=130.60 Aligned_cols=384 Identities=16% Similarity=0.075 Sum_probs=253.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCCCH--
Q 011249 71 WTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNV-- 148 (490)
Q Consensus 71 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-- 148 (490)
+-....-|.++|.+++|++.|.+.++. .||..+|-.-..+| |...|++++..+--.+.++-++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAc-------------Y~~lgd~~~Vied~TkALEl~P~Y 182 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAAC-------------YESLGDWEKVIEDCTKALELNPDY 182 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHH-------------HHHHhhHHHHHHHHHHHhhcCcHH
Confidence 334556677889999999999999886 77855555555554 8888999988888777776333
Q ss_pred -hHHHHHHHHHHhCCChHHHHHHHHHhc--c-CCchhHHHHHHHHHhcCChhHHHHHHhhcCC---CCHHhHHH------
Q 011249 149 -ISWSAMVAGYANCGNMKAAKEFYDRMT--E-KNSVTWVAMIAGYGKCGEVREAKKVFDEISE---PDASCWAA------ 215 (490)
Q Consensus 149 -~~~~~l~~~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~------ 215 (490)
..+..-..++-..|++++|+.-..-.- + -+......++.--.+.--...+.+-+.+-.. |+.....+
T Consensus 183 ~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~ 262 (606)
T KOG0547|consen 183 VKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFH 262 (606)
T ss_pred HHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence 355555667777777777654322110 0 0000000111100110011122222221011 22222222
Q ss_pred -----------------HHHHHHh--cC---ChHHHHHHHHHHHHc-CcccCh-----------hhHHHHHHHHhccCCh
Q 011249 216 -----------------MTVCYVQ--NG---YAKAAIEMYKVMRQE-NVRISE-----------VAMVGAISACTQLGDV 261 (490)
Q Consensus 216 -----------------l~~~~~~--~g---~~~~A~~~~~~~~~~-~~~p~~-----------~~~~~l~~~~~~~g~~ 261 (490)
+..++.. .+ .+..|...+.+-... -..++. .+.......+.-.|+.
T Consensus 263 ~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 263 ADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred ccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 1111111 11 233333333221110 011111 1122222223456888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011249 262 EMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMR 338 (490)
Q Consensus 262 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 338 (490)
-.+..-++..++.. +.+...|--+..+|....+.++.++.|.+..+ .++.+|..-.+.+.-.+++++|..-|++.+
T Consensus 343 ~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred hhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998876 33444477788889999999999999998775 467788888888888899999999999999
Q ss_pred HcCCCCcH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCCC---
Q 011249 339 NEGIEPNQ-VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCD--- 413 (490)
Q Consensus 339 ~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~--- 413 (490)
. +.|+. ..|..+..+..+.+.++++...|++..+ .+|..+++|+.....+...+++++|.+.|+... ..|.
T Consensus 422 ~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 422 S--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred h--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 8 56654 4777777777889999999999999998 678888999999999999999999999998765 2222
Q ss_pred ------hhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhh
Q 011249 414 ------AGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMIS 475 (490)
Q Consensus 414 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (490)
+.+...++.. .-.+++..|+.+++++.+++|....+|..|+.+..++|+.++|+++|++..
T Consensus 498 ~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2222233322 234899999999999999999999999999999999999999999998753
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=1.1e-15 Score=134.04 Aligned_cols=394 Identities=14% Similarity=0.101 Sum_probs=275.1
Q ss_pred ehHH---HHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC-
Q 011249 70 LWTS---LIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE- 145 (490)
Q Consensus 70 ~~~~---l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 145 (490)
+|+. |.+-|..+....+|+..|+-+.+....|+.-....- +...+.+.+.+.+|++.+.-...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmn-------------igni~~kkr~fskaikfyrmaldq 266 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMN-------------IGNIHFKKREFSKAIKFYRMALDQ 266 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeee-------------ecceeeehhhHHHHHHHHHHHHhh
Confidence 4554 445566678899999999999988888876544322 23357888899999999887664
Q ss_pred -CC------HhHHHHHHHHHHhCCChHHHHHHHHHhcc--CCchhHHHHHHHHHhcCChhHHHHHHhhcCC---------
Q 011249 146 -RN------VISWSAMVAGYANCGNMKAAKEFYDRMTE--KNSVTWVAMIAGYGKCGEVREAKKVFDEISE--------- 207 (490)
Q Consensus 146 -~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------- 207 (490)
|+ +...+.+...+.+.|+++.|+..|+...+ ||..+-..|+-++...|+.++..+.|.++..
T Consensus 267 vpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddk 346 (840)
T KOG2003|consen 267 VPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDK 346 (840)
T ss_pred ccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccc
Confidence 32 34567777789999999999999999885 5766666777778888999999999988863
Q ss_pred -------CCHHhHHHHH-----HHHHhcC--ChHHHHHHHHHHHHcCcccChh-hHH--------------------HHH
Q 011249 208 -------PDASCWAAMT-----VCYVQNG--YAKAAIEMYKVMRQENVRISEV-AMV--------------------GAI 252 (490)
Q Consensus 208 -------~~~~~~~~l~-----~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~-~~~--------------------~l~ 252 (490)
|+....+.-+ .-+-+.+ +.++++-.--+++.--+.|+-. .+. .-.
T Consensus 347 yi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka 426 (840)
T KOG2003|consen 347 YIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKA 426 (840)
T ss_pred ccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHH
Confidence 2322222222 2222222 1223333333333323333321 010 112
Q ss_pred HHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHH------------------------------------HHhcCCh
Q 011249 253 SACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHM------------------------------------HSKCGYL 296 (490)
Q Consensus 253 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------------------------------~~~~~~~ 296 (490)
..+.+.|+++.|.++++-+.+..-..-...-+.|-.. -...|++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 2356789999999999887654322211111111100 1124678
Q ss_pred HHHHHHHhcccCCChhHHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 011249 297 DLAWREFSRIKNKDVISYSSMI---TAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMT 373 (490)
Q Consensus 297 ~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 373 (490)
++|.+.|++....|...-.+|. -.+-..|+.++|+..|-++..- +.-+...+..+...|....+...|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 8888888888876665444433 3566789999999999887653 23455677788888988899999999998886
Q ss_pred HHcCCCCCchHHHHHHHHHhhcCChHHHHHHH-Hhcc-CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchH
Q 011249 374 RVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLI-MDYK-DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNS 451 (490)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 451 (490)
. -++.|+.....|.+.|-+.|+-.+|.+.+ +... .+.+..+..-|..-|....-+++++.+|+++.-+.|+-..--
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq 663 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ 663 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH
Confidence 5 67778999999999999999999999875 5555 566888888888888888889999999999999999855544
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 452 ALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
..++.++.+.|+|++|.++++.+..+-+
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 4556777789999999999998876543
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=1.2e-12 Score=120.20 Aligned_cols=359 Identities=12% Similarity=0.097 Sum_probs=279.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHhcc--------CCchhHHHHHHHHHh
Q 011249 123 VICGYTKIGLMDDAQRLFDSMAE---RNVISWSAMVAGYANCGNMKAAKEFYDRMTE--------KNSVTWVAMIAGYGK 191 (490)
Q Consensus 123 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~ 191 (490)
|-.+|.+..-++.|..++++..+ .+...|-+-...--++|+.+.+.++..+... -+...|..=...|-.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 44556666777777777776655 3666777766666777777777777766552 144555555566666
Q ss_pred cCChhHHHHHHhhcCC------CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHH
Q 011249 192 CGEVREAKKVFDEISE------PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAA 265 (490)
Q Consensus 192 ~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 265 (490)
.|..-.+..+...... .-..+|..-...|.+.+.++-|..+|....+.- +-+...|......--..|..+...
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHH
Confidence 6666666666555432 334578888888899999999999998888753 335567777777667788999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011249 266 ILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--K-DVISYSSMITAFADHGKSQEALDMFLKMRNEGI 342 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 342 (490)
.+++++.... |.....+......+-..|++..|..++..+-+ | +...|..-+.......+++.|..+|.+... .
T Consensus 571 Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~ 647 (913)
T KOG0495|consen 571 ALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--I 647 (913)
T ss_pred HHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--c
Confidence 9999998875 66677787888888889999999999988765 3 556888888888999999999999999887 4
Q ss_pred CCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCC-ChhhHHHH
Q 011249 343 EPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFC-DAGTWGAL 420 (490)
Q Consensus 343 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l 420 (490)
.|+...|..-+..-...++.++|.+++++..+ .++.-...|..+.+.+.+.++.+.|.+.|..-. ..| .+..|..+
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL 725 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL 725 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence 67777776666666668999999999999998 566667788889999999999999999886655 334 56788888
Q ss_pred HHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccccCCCccccC
Q 011249 421 LGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSWIS 489 (490)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 489 (490)
...-.+.|..-+|..+++++.-.+|.++..|...+.+-.+.|+.+.|..++.+..+. -+..|.=|.+
T Consensus 726 akleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaE 792 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAE 792 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHH
Confidence 888888999999999999999999999999999999999999999999999888765 3455655543
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.2e-13 Score=120.10 Aligned_cols=392 Identities=8% Similarity=0.000 Sum_probs=278.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCC--CCh--HHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 011249 72 TSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARV--PSL--LEAVICGYTKIGLMDDAQRLFDSMAE-- 145 (490)
Q Consensus 72 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~-- 145 (490)
..+..++.....++.|.-.++..... ....+..+++. +.. .........+.+....-.+.|..+.+
T Consensus 82 y~laks~fd~kEf~Raa~fL~~~~s~--------k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~l 153 (559)
T KOG1155|consen 82 YLLAKSYFDCKEFERAAFFLQNCKSK--------KSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPL 153 (559)
T ss_pred hhhHhhhhhhHHHHHHHHHHHhcchH--------HHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHH
Confidence 35667777788888888777765442 12222222111 000 01222222233333333333333322
Q ss_pred --------CCHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhcCCCCH-HhHHHH
Q 011249 146 --------RNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDA-SCWAAM 216 (490)
Q Consensus 146 --------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l 216 (490)
.|...+-.....+.+.|....|+..|......-+..|.+.+....-..+.+.+..+.......+. ..=-.+
T Consensus 154 e~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 154 ESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFL 233 (559)
T ss_pred HHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHH
Confidence 34444444556677788899999999888877677777776666666666666555544443221 122234
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHhc
Q 011249 217 TVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDR---TNYVSNALIHMHSKC 293 (490)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 293 (490)
..++....+.+++++-.+.....|+..+...-+....+.-...|+++|+.+|+++.+.. |- |..+|..++-+-...
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHHHhhh
Confidence 56677777889999988888888877666555566666778899999999999999884 33 455666555443332
Q ss_pred CChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHhcCCCChHHHHHHHHHH
Q 011249 294 GYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQ-VTFIGVLTACSHGGLVEDGCKQFELM 372 (490)
Q Consensus 294 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 372 (490)
.++.---.....+.+-.+.|...+..-|.-.++.++|...|++.++ +.|.. ..|+.+..-|....+...|..-++.+
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 2222222222233444567788888889999999999999999998 46654 46777777899999999999999999
Q ss_pred HHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCch
Q 011249 373 TRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGN 450 (490)
Q Consensus 373 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 450 (490)
.+ -.|.|-..|..|.++|.-.+.+.=|+-+|++.. .+.|+..|.+|...|.+.++.++|++.|.++...+-.+..+
T Consensus 391 vd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred Hh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 98 567788899999999999999999999998887 45678899999999999999999999999999988778899
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 451 SALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
+..|+++|.+.++.++|...+++-++
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999988765
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=3.2e-14 Score=133.08 Aligned_cols=214 Identities=9% Similarity=-0.034 Sum_probs=104.8
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCC---Chh--------HHHHHHHHHH
Q 011249 254 ACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNK---DVI--------SYSSMITAFA 322 (490)
Q Consensus 254 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~--------~~~~l~~~~~ 322 (490)
.+...|+++.|...++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+. +.. +|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443 333444444444444445555444444444331 011 1222222222
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHH
Q 011249 323 DHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAH 402 (490)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 402 (490)
...+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.
T Consensus 241 ~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al 314 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLE 314 (398)
T ss_pred HhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHH
Confidence 233334444444443322 2234445555566666666666666666655542 3333211 222233446666666
Q ss_pred HHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhh
Q 011249 403 SLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMIS 475 (490)
Q Consensus 403 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (490)
+..+.+. .+.++..+..+...|...+++++|.+.|+++.+..|++ ..+..++.++.+.|+.++|.+++++-.
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6665554 22334445566666666666666666666666666663 334556666666666666666666543
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=3.8e-13 Score=128.04 Aligned_cols=313 Identities=12% Similarity=0.111 Sum_probs=191.0
Q ss_pred cchhhhhhchhhHHHHHHHHhhhcCCC-CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHh
Q 011249 4 KYLVPRSKTFNQLKQVHSYLLKTLTKP-HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVL 80 (490)
Q Consensus 4 ~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 80 (490)
+..+-+.|+++.|..+...+++ .. .++. .|..|...|-+.|+ .+++...+=..- .|.....|-.+.....+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIk---qdp~~~~--ay~tL~~IyEqrGd-~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIK---QDPRNPI--AYYTLGEIYEQRGD-IEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH---hCccchh--hHHHHHHHHHHccc-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 4455567999999999999999 77 8888 99999999999999 999998875543 45444789999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC--C--CHh----HHH
Q 011249 81 HAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE--R--NVI----SWS 152 (490)
Q Consensus 81 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~~~----~~~ 152 (490)
.|++++|.-.|.+..+. .|+.. ..+.. -+..|-+.|+...|...|.++.. | |.. .--
T Consensus 220 ~~~i~qA~~cy~rAI~~--~p~n~--~~~~e-----------rs~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~ 284 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQA--NPSNW--ELIYE-----------RSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR 284 (895)
T ss_pred cccHHHHHHHHHHHHhc--CCcch--HHHHH-----------HHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH
Confidence 99999999999999887 34432 22222 12346777888888877777765 2 111 122
Q ss_pred HHHHHHHhCCChHHHHHHHHHhccC-----CchhHHHHHHHHHhcCChhHHHHHHhhcCC--------------------
Q 011249 153 AMVAGYANCGNMKAAKEFYDRMTEK-----NSVTWVAMIAGYGKCGEVREAKKVFDEISE-------------------- 207 (490)
Q Consensus 153 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------------- 207 (490)
..+..+...++-+.|.+.++..... +...++.++..+.+...++.|.........
T Consensus 285 ~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 285 RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 2345566666667777777766642 445566677777776666666655543321
Q ss_pred ------CCHHhHH----HHHHHHHhcCChHHHHHHHHHHHHcCc--ccChhhHHHHHHHHhccCChHHHHHHHHHHHhcC
Q 011249 208 ------PDASCWA----AMTVCYVQNGYAKAAIEMYKVMRQENV--RISEVAMVGAISACTQLGDVEMAAILAKHVDEGC 275 (490)
Q Consensus 208 ------~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 275 (490)
++...|. -++-++.+.+..+....+........+ .-+...|.-+..++.+.|++.+|..++..+....
T Consensus 365 ~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred cccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 0001111 122222333333333333333333332 2233455556666666666666666666665554
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011249 276 CDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--K-DVISYSSMITAFADHGKSQEALDMFLKM 337 (490)
Q Consensus 276 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 337 (490)
..-+..+|-.+..+|...|.++.|.+.|+++.. | +...--.|...+.+.|++++|.+.++.+
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 344455566666666666666666666666554 2 2233334444555666666666666553
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=7.4e-15 Score=135.20 Aligned_cols=277 Identities=14% Similarity=0.039 Sum_probs=201.5
Q ss_pred ChhHHHHHHhhcCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCc--ccChhhHHHHHHHHhccCChHHHHHHH
Q 011249 194 EVREAKKVFDEISE---PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENV--RISEVAMVGAISACTQLGDVEMAAILA 268 (490)
Q Consensus 194 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~ 268 (490)
+..+|+..|..+.. ........+..+|...+++++|.++|+.+.+... .-+...|...+..+.+ +-+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 56777888877554 2334455677888888888888888888876421 1245667766665433 2223333
Q ss_pred H-HHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011249 269 K-HVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNK---DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP 344 (490)
Q Consensus 269 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 344 (490)
. .+.+.. +..+.+|.++.+.|.-+++.+.|++.|++...- ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 333333 667788888888888888888888888887763 456777777777888888888888888775 455
Q ss_pred cHH-HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHH
Q 011249 345 NQV-TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALL 421 (490)
Q Consensus 345 ~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 421 (490)
... .|-.+...|.++++++.|+-.|+++.+ --|-+......+...+.+.|+.++|++++++.. ++.++..--.-+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 443 666777888888999998888888875 233345555667778888889999999988776 444555555556
Q ss_pred HHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 422 GACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
..+...+++++|.+.++++.+.-|++..++..++.+|.+.|+.+.|+.-|--+.+.++
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 6677888899999999999999999999999999999999999988888877765544
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.8e-12 Score=114.75 Aligned_cols=424 Identities=10% Similarity=0.088 Sum_probs=301.8
Q ss_pred CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCCC---CCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHH
Q 011249 31 HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPK---CKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFS 107 (490)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 107 (490)
-+.. .|-.....--..++ ...|+.+|++... .+. ..|-.-+..-.++.+...|..++++....=...|..-|.
T Consensus 71 ~~~~--~WikYaqwEesq~e-~~RARSv~ERALdvd~r~i-tLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK 146 (677)
T KOG1915|consen 71 LNMQ--VWIKYAQWEESQKE-IQRARSVFERALDVDYRNI-TLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK 146 (677)
T ss_pred HHHH--HHHHHHHHHHhHHH-HHHHHHHHHHHHhcccccc-hHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH
Confidence 4445 66666666667777 8889999998763 333 557777778888999999999999887752222333332
Q ss_pred HHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHhc--cCCchhHH
Q 011249 108 SVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE--RNVISWSAMVAGYANCGNMKAAKEFYDRMT--EKNSVTWV 183 (490)
Q Consensus 108 ~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~ 183 (490)
.+. +=-..|++..|+++|++-.+ |+...|++.++.-.+-+..+.|..+|++.. .|++.+|.
T Consensus 147 Y~y---------------mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wi 211 (677)
T KOG1915|consen 147 YIY---------------MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWI 211 (677)
T ss_pred HHH---------------HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHH
Confidence 222 12345899999999998775 899999999999999999999999999877 68888898
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCC------CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCccc-ChhhHHHHHHHHh
Q 011249 184 AMIAGYGKCGEVREAKKVFDEISE------PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRI-SEVAMVGAISACT 256 (490)
Q Consensus 184 ~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 256 (490)
..+..-.+.|....|..+|+...+ .+...+.+....-.+...++.|.-+|+-....=..- ....|......--
T Consensus 212 kyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 212 KYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 888888899999999999988765 233445555555566777888888888877652111 1234444444434
Q ss_pred ccCChHHHHH--------HHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--CCh---hHHHHHHH----
Q 011249 257 QLGDVEMAAI--------LAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--KDV---ISYSSMIT---- 319 (490)
Q Consensus 257 ~~g~~~~a~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~l~~---- 319 (490)
+-|+...... -|+..++.+ +.|-.+|--.+..-...|+.+...++|++... |.. ..|...|-
T Consensus 292 qfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWin 370 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWIN 370 (677)
T ss_pred HhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHH
Confidence 4455443322 234444444 66777777788888888999999999988765 211 12222211
Q ss_pred ----HHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHH----HhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 011249 320 ----AFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLT----ACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVD 390 (490)
Q Consensus 320 ----~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 390 (490)
.-....+.+.+.++|+..++ +.| ...||..+=- --.++.++..|.+++.... |..|...++...|.
T Consensus 371 YalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 371 YALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHH
Confidence 11346788889999998888 344 3445544432 2356788889999998885 77888889988888
Q ss_pred HHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC-C-chHHHHHHHHHhcCCcch
Q 011249 391 LLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEK-T-GNSALLANIYASMGKWKD 466 (490)
Q Consensus 391 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~-~~~~~l~~~~~~~g~~~~ 466 (490)
.-.+.++++.+.++|++.. .+.+-.+|......-...|+.++|..+|+-++.....+ | -.+...+..-...|.++.
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek 525 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK 525 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH
Confidence 8889999999999998877 34466788888887888899999999999888754222 2 245556666778899999
Q ss_pred HHHHHHHhhhccc
Q 011249 467 SEIVKMMISETEK 479 (490)
Q Consensus 467 A~~~~~~~~~~~~ 479 (490)
|..+++++.+...
T Consensus 526 aR~LYerlL~rt~ 538 (677)
T KOG1915|consen 526 ARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHHHHHhcc
Confidence 9999998887643
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=1.9e-13 Score=127.93 Aligned_cols=276 Identities=12% Similarity=0.027 Sum_probs=184.7
Q ss_pred CCChHHHHHHHHHhccC--Cchh-HHHHHHHHHhcCChhHHHHHHhhcCC--CCHHhHH--HHHHHHHhcCChHHHHHHH
Q 011249 161 CGNMKAAKEFYDRMTEK--NSVT-WVAMIAGYGKCGEVREAKKVFDEISE--PDASCWA--AMTVCYVQNGYAKAAIEMY 233 (490)
Q Consensus 161 ~~~~~~a~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~g~~~~A~~~~ 233 (490)
.|++++|.+.+....+. ++.. |........+.|+++.|.+.+.++.+ |+..... .....+...|+++.|.+.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46666666555554432 1222 22223333566666666666666554 3332222 2245666667777777777
Q ss_pred HHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCch-------hHHHHHHHHHHhcCChHHHHHHHhcc
Q 011249 234 KVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTN-------YVSNALIHMHSKCGYLDLAWREFSRI 306 (490)
Q Consensus 234 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~ 306 (490)
+++.+..+. +......+...+.+.|++++|..++..+.+.+..++. ..|..++.......+.+...++++.+
T Consensus 177 ~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 766665422 4455666666666777777777777776665533221 12223333333444556666666666
Q ss_pred cC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCch
Q 011249 307 KN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTE 383 (490)
Q Consensus 307 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 383 (490)
.+ .++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+ ..|.|+.
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~ 329 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPL 329 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHH
Confidence 54 47778888889999999999999999998873 5555322 23334456899999999999987 4566677
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcc-CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhc
Q 011249 384 HLTCMVDLLGRSGQLEKAHSLIMDYK-DFCDAGTWGALLGACKVHVNAELGEIAARHLLEL 443 (490)
Q Consensus 384 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (490)
.+..+...+.+.|++++|.+.|+... ..|+...+..+..++...|+.++|.+++++.+..
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 78889999999999999999998877 6688888889999999999999999999998764
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=7.4e-15 Score=135.16 Aligned_cols=277 Identities=14% Similarity=0.090 Sum_probs=223.3
Q ss_pred ChHHHHHHHHHhccC---CchhHHHHHHHHHhcCChhHHHHHHhhcCC------CCHHhHHHHHHHHHhcCChHHHHHHH
Q 011249 163 NMKAAKEFYDRMTEK---NSVTWVAMIAGYGKCGEVREAKKVFDEISE------PDASCWAAMTVCYVQNGYAKAAIEMY 233 (490)
Q Consensus 163 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~ 233 (490)
+..+|+..|.+.... .......+..+|...+++++|+++|+.+.+ .+...|.+.+..+-+. -++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 567888888885432 445667888999999999999999999875 5677888777655332 222222
Q ss_pred -HHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChh
Q 011249 234 -KVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVI 312 (490)
Q Consensus 234 -~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 312 (490)
+.+.... +-.+.+|..+.++|.-+++.+.|++.|++..+.. +....+|+.+..-+....++|.|...|+.....|+.
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 2333332 3467899999999999999999999999999876 557889999999999999999999999999987666
Q ss_pred HHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHH
Q 011249 313 SYS---SMITAFADHGKSQEALDMFLKMRNEGIEPN-QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCM 388 (490)
Q Consensus 313 ~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 388 (490)
.|+ .+...|.+.++++.|+-.|+++.+ +.|. .+....+...+.+.|+.++|+.+++++.. --+.++..-...
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHH
Confidence 555 467789999999999999999998 5664 45677778888999999999999999976 334455555566
Q ss_pred HHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCc
Q 011249 389 VDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTG 449 (490)
Q Consensus 389 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 449 (490)
+..+...+++++|+..++++. .+.+..++..+...|.+.|+.+.|+.-|..+..++|.-..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 788889999999999999988 3445667888889999999999999999999999987443
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=2.5e-13 Score=127.80 Aligned_cols=116 Identities=12% Similarity=0.083 Sum_probs=66.3
Q ss_pred HhCCChHHHHHHHHHhccC--C-chhHHHHHHHHHhcCChhHHHHHHhhcCC--CCH--HhHHHHHHHHHhcCChHHHHH
Q 011249 159 ANCGNMKAAKEFYDRMTEK--N-SVTWVAMIAGYGKCGEVREAKKVFDEISE--PDA--SCWAAMTVCYVQNGYAKAAIE 231 (490)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~A~~ 231 (490)
...|+++.|.+.+.+..+. + ...+.....+....|+.+.|.+.+.+..+ |+. .........+...|+++.|.+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 3466677777666665542 2 22233444555666666666666666533 332 222334566666666666666
Q ss_pred HHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcC
Q 011249 232 MYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGC 275 (490)
Q Consensus 232 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 275 (490)
.++.+.+..+. +...+..+...+...|++++|.+.+..+.+.+
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 66666665422 44455566666666666666666666666665
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.3e-12 Score=118.18 Aligned_cols=447 Identities=11% Similarity=0.011 Sum_probs=284.3
Q ss_pred chhhHHHHHHHHhhhcCCCCchhHhHHHHHHHHHhcCCCCHHHHHHHhcc--CCCCCCceehHHHHHHHHhcCChhHHHH
Q 011249 12 TFNQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQ--IPKCKTQFLWTSLIRNHVLHAHFRQSIL 89 (490)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 89 (490)
++..|..+-+.+.. .+.+|. --.-+.+.+.-.+. .+.|..+... +...+. .+.......+.+..++++|..
T Consensus 31 ~y~~a~f~adkV~~---l~~dp~--d~~~~aq~l~~~~~-y~ra~~lit~~~le~~d~-~cryL~~~~l~~lk~~~~al~ 103 (611)
T KOG1173|consen 31 RYKTALFWADKVAG---LTNDPA--DIYWLAQVLYLGRQ-YERAAHLITTYKLEKRDI-ACRYLAAKCLVKLKEWDQALL 103 (611)
T ss_pred hhhHHHHHHHHHHh---ccCChH--HHHHHHHHHHhhhH-HHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666655 444444 44566777777777 7777777654 345555 677777788888999999999
Q ss_pred HHHHH----HhcC---------CCCCHhh----HHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHH
Q 011249 90 LYAKM----HRLG---------VLTSGFT----FSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWS 152 (490)
Q Consensus 90 ~~~~m----~~~g---------~~p~~~~----~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 152 (490)
++... .... +.+|... -+.-...|...|. .|......++|...|.+....|+..+.
T Consensus 104 vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk-------~y~al~n~~~ar~~Y~~Al~~D~~c~E 176 (611)
T KOG1173|consen 104 VLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGK-------VYVALDNREEARDKYKEALLADAKCFE 176 (611)
T ss_pred HhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeee-------hhhhhccHHHHHHHHHHHHhcchhhHH
Confidence 98832 1110 1111111 0111111211111 244455677777777776665655544
Q ss_pred HHHHHHHhC-CChHHHHHHHHHhc-----cCCchhHHHHHHHHHhcCChhHHHHHH--hhcC--CCCHHhHHHHHHHHHh
Q 011249 153 AMVAGYANC-GNMKAAKEFYDRMT-----EKNSVTWVAMIAGYGKCGEVREAKKVF--DEIS--EPDASCWAAMTVCYVQ 222 (490)
Q Consensus 153 ~l~~~~~~~-~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~--~~~~--~~~~~~~~~l~~~~~~ 222 (490)
.+...-... --.++-..+++... ..+......+.........-++....- +.+. +.++........-+..
T Consensus 177 a~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~ 256 (611)
T KOG1173|consen 177 AFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYY 256 (611)
T ss_pred HHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHH
Confidence 433221110 00111122222110 111211112211110000000000000 0011 1455556666677778
Q ss_pred cCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 011249 223 NGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWRE 302 (490)
Q Consensus 223 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 302 (490)
.+++.+..++.+...+.. ++....+..-|.++...|+..+-.-+-.++.+.- |..+.+|-++.--|.-.|+.++|++.
T Consensus 257 ~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred cChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 889999999998888653 4455555666667888888777777777777764 67778888888888888999999999
Q ss_pred HhcccCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCC
Q 011249 303 FSRIKNKD---VISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIK 379 (490)
Q Consensus 303 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 379 (490)
|.+...-| ...|-.....|.-.|..|+|+..+..+-+. ++-....+.-+..-|.+.++.+.|.++|..... -.|
T Consensus 335 ~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P 411 (611)
T KOG1173|consen 335 FSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAP 411 (611)
T ss_pred HHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCC
Confidence 98876532 357888888999999999999988887763 121222344455557788899999999988875 445
Q ss_pred CCchHHHHHHHHHhhcCChHHHHHHHHhcc--------CCC-ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCch
Q 011249 380 PLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--------DFC-DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGN 450 (490)
Q Consensus 380 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 450 (490)
.|+...+-+.-.....+.+.+|..+|+... ..+ -.++++.|..+|.+.+.+++|+..+++++.+.|.++.+
T Consensus 412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~ 491 (611)
T KOG1173|consen 412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAST 491 (611)
T ss_pred CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhH
Confidence 567777777777778888999999887654 111 34567888889999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 451 SALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
+..++.+|...|+.+.|.+.|.+..-.
T Consensus 492 ~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 492 HASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 999999999999999999999877644
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=6.8e-13 Score=124.90 Aligned_cols=280 Identities=11% Similarity=-0.012 Sum_probs=116.3
Q ss_pred hcCChhHHHHHHhhcCC--CCH-HhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHH
Q 011249 191 KCGEVREAKKVFDEISE--PDA-SCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAIL 267 (490)
Q Consensus 191 ~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 267 (490)
..|+++.|.+.+.+..+ |++ ..+-....+..+.|+++.|.+.+++..+....+...........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555555555544433 221 122223344444455555555555544321111111222224444445555555555
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHH----HHHHHHHhcCChHHHHHHHHHHHHc
Q 011249 268 AKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYS----SMITAFADHGKSQEALDMFLKMRNE 340 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (490)
++.+.+.. |.++.+...+..++...|++++|.+.+..+.+ .+...+. .........+..+++...+..+.+.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55554443 33444444455555555555555555544442 1111111 0001111122222222233333322
Q ss_pred CC---CCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchH--HHHHHHHHhhcCChHHHHHHHHhcc-CCC-C
Q 011249 341 GI---EPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEH--LTCMVDLLGRSGQLEKAHSLIMDYK-DFC-D 413 (490)
Q Consensus 341 ~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~ 413 (490)
.. +.+...+..+...+...|+.++|.+.+++..+. .+++... ...........++.+.+.+.+++.. ..| +
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 10 013344444445555555555555555555442 1111110 0111111122344455555554443 122 2
Q ss_pred h--hhHHHHHHHHhhhCChHHHHHHHH--HHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHh
Q 011249 414 A--GTWGALLGACKVHVNAELGEIAAR--HLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMI 474 (490)
Q Consensus 414 ~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (490)
+ ....++...|.+.|++++|.+.|+ .+.+..|++. .+..++.++.+.|+.++|.+++++.
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 344455555566666666666666 3444445432 2445566666666666666665543
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=1.1e-15 Score=136.69 Aligned_cols=251 Identities=14% Similarity=0.089 Sum_probs=107.2
Q ss_pred HHHHHHHhcCChhHHHHHHhhc-CC----CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhcc
Q 011249 184 AMIAGYGKCGEVREAKKVFDEI-SE----PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQL 258 (490)
Q Consensus 184 ~l~~~~~~~~~~~~A~~~~~~~-~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 258 (490)
.+...+.+.|++++|++++++. .. .+...|..+.......++++.|.+.|+++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3466677777777777777432 22 34555666666777778888888888888765433 45556666665 677
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC-----CChhHHHHHHHHHHhcCChHHHHHH
Q 011249 259 GDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN-----KDVISYSSMITAFADHGKSQEALDM 333 (490)
Q Consensus 259 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~ 333 (490)
+++++|.+++....+.. +++..+..++..+...++++++..+++.+.. +++..|..+...+.+.|++++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888887777654432 4555566677778888888888888777542 4667788888889999999999999
Q ss_pred HHHHHHcCCCCc-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--C
Q 011249 334 FLKMRNEGIEPN-QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--D 410 (490)
Q Consensus 334 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 410 (490)
+++..+. .|+ ......++..+...|+.+++.++++...+. .+.++..+..+..+|...|+.++|..+|++.. .
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9999984 665 567788888999999999999999998884 36677888899999999999999999998876 4
Q ss_pred CCChhhHHHHHHHHhhhCChHHHHHHHHHHHh
Q 011249 411 FCDAGTWGALLGACKVHVNAELGEIAARHLLE 442 (490)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (490)
+.|+.....+..++...|+.++|.++.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 55788888999999999999999999988765
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6.6e-12 Score=110.97 Aligned_cols=155 Identities=12% Similarity=0.034 Sum_probs=72.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHh
Q 011249 247 AMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFAD 323 (490)
Q Consensus 247 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 323 (490)
|...+.+-|.-.++.++|..+|++..+.+ |.....|+.+.+-|....+...|.+-|+...+ .|-..|-.+.++|.-
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 34444444444444444444444444443 33344444444444444444445444444433 233444445555555
Q ss_pred cCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHH
Q 011249 324 HGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAH 402 (490)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 402 (490)
.+.+.-|+-.|++..+ ..| |...|..|..+|.+.++.++|++.|..... .-..+...+..|.+.|.+.++.++|.
T Consensus 411 m~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred hcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHhHHHHH
Confidence 5555555555554444 233 333445555555555555555555554444 22223344444555555555555554
Q ss_pred HHHH
Q 011249 403 SLIM 406 (490)
Q Consensus 403 ~~~~ 406 (490)
..|+
T Consensus 487 ~~ye 490 (559)
T KOG1155|consen 487 QYYE 490 (559)
T ss_pred HHHH
Confidence 4443
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=1.3e-12 Score=110.09 Aligned_cols=260 Identities=13% Similarity=0.118 Sum_probs=160.0
Q ss_pred CCChHHHHHHHHHhccCCchhH---HHHHHHHHhcCChhHHHHHHhhcCC-CCH------HhHHHHHHHHHhcCChHHHH
Q 011249 161 CGNMKAAKEFYDRMTEKNSVTW---VAMIAGYGKCGEVREAKKVFDEISE-PDA------SCWAAMTVCYVQNGYAKAAI 230 (490)
Q Consensus 161 ~~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~~~g~~~~A~ 230 (490)
+++.++|.++|-+|.+.|+.|+ .+|.+.|.+.|..|.|+++...+.+ ||. .....|..=|...|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4667777777777776555444 5667777777777777777776654 332 23345666778888888888
Q ss_pred HHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCChHHHHHHHhcc
Q 011249 231 EMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRT----NYVSNALIHMHSKCGYLDLAWREFSRI 306 (490)
Q Consensus 231 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~ 306 (490)
.+|..+...+ ..-......|+..|....+|++|+..-+++.+.+..+. ...|.-|...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 8888887654 22445677788888888888888888887777664332 234444555555566666666666666
Q ss_pred cCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCch
Q 011249 307 KNK---DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTE 383 (490)
Q Consensus 307 ~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 383 (490)
.+. .+..--.+.+.+...|+++.|.+.|+...+.+..--+.+...|..+|...|+.++....+..+.+. .+...
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~ 283 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGAD 283 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCcc
Confidence 542 223333445566667777777777777766533333446666666777777777777777666652 23333
Q ss_pred HHHHHHHHHhhcCChHHHHHHH-HhccCCCChhhHHHHHHHH
Q 011249 384 HLTCMVDLLGRSGQLEKAHSLI-MDYKDFCDAGTWGALLGAC 424 (490)
Q Consensus 384 ~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~ 424 (490)
.-..+.+.-....-.+.|..++ +++..+|+...+..++...
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 3333444333333344444433 4455566666666666544
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=6e-12 Score=106.19 Aligned_cols=277 Identities=13% Similarity=0.121 Sum_probs=212.5
Q ss_pred HHhcCCHHHHHHHHhhcCCCCHhH---HHHHHHHHHhCCChHHHHHHHHHhccCCch-------hHHHHHHHHHhcCChh
Q 011249 127 YTKIGLMDDAQRLFDSMAERNVIS---WSAMVAGYANCGNMKAAKEFYDRMTEKNSV-------TWVAMIAGYGKCGEVR 196 (490)
Q Consensus 127 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~ 196 (490)
+.-+.+.++|.+.|-+|.+.|..+ .-+|.+.|-+.|..|.|+++.+.+.++... ....|..-|...|-+|
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 445689999999999999865554 557889999999999999999998865222 4467778899999999
Q ss_pred HHHHHHhhcCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccCh----hhHHHHHHHHhccCChHHHHHHHH
Q 011249 197 EAKKVFDEISE---PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISE----VAMVGAISACTQLGDVEMAAILAK 269 (490)
Q Consensus 197 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~ 269 (490)
.|+.+|..+.+ .-......|+..|....+|++|++.-+++.+.+.++.. ..|.-+...+....+.+.|..+++
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999877 34557788999999999999999999999987655543 356666677777889999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 011249 270 HVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDV----ISYSSMITAFADHGKSQEALDMFLKMRNEGIEPN 345 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 345 (490)
+..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|+ .+...|..+|...|+.++....+..+.+.. ++
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g 281 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TG 281 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CC
Confidence 998876 55666666788999999999999999999998654 466778889999999999999999999853 33
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhh---cCChHHHHHHHHhcc
Q 011249 346 QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGR---SGQLEKAHSLIMDYK 409 (490)
Q Consensus 346 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 409 (490)
...-..+........-.+.|..++.+-.. -+|+...+..+++.-.. .|...+....++.|.
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 33333444433334444555555544443 37999999888886543 344555555555554
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=4.4e-11 Score=104.19 Aligned_cols=275 Identities=14% Similarity=0.043 Sum_probs=158.5
Q ss_pred CCChHHHHHHHHHhccC---CchhHHHHHHHHHhcCChhHHHHHHhhcCC----CCHHhHHHHHHHHHhcCChHHHHHHH
Q 011249 161 CGNMKAAKEFYDRMTEK---NSVTWVAMIAGYGKCGEVREAKKVFDEISE----PDASCWAAMTVCYVQNGYAKAAIEMY 233 (490)
Q Consensus 161 ~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~ 233 (490)
.|++.+|+++..+..+. ....|..-+.+-...||.+.+-+.+.+..+ ++....-+..+.....|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 35555555555544332 122233333444445555555555555443 22233444445555555555555555
Q ss_pred HHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCch-------hHHHHHHHHHHhcCChHHHHHHHhcc
Q 011249 234 KVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTN-------YVSNALIHMHSKCGYLDLAWREFSRI 306 (490)
Q Consensus 234 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~ 306 (490)
.++.+.+.. ++........+|.+.|++.....++..+.+.+.-.+. .++..+++-....+..+.-...+++.
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 555554322 3444555555555566666665555555555543332 23444444444444444444555555
Q ss_pred cC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCch
Q 011249 307 KN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTE 383 (490)
Q Consensus 307 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 383 (490)
+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+.. ..-.+.+.++.+.-++..++-.+.++ .++.
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~--~~p~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHP--EDPL 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCC--CChh
Confidence 43 356666667777777788888888777777766666521 12235566777776677776666433 3346
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcc-CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHh
Q 011249 384 HLTCMVDLLGRSGQLEKAHSLIMDYK-DFCDAGTWGALLGACKVHVNAELGEIAARHLLE 442 (490)
Q Consensus 384 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (490)
.+..|...|.+.+.|.+|.+.|+... ..|+...|..+..++...|+.++|.++.++.+.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66677777777777777777776554 567777777777777777777777777777764
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=2.3e-11 Score=105.92 Aligned_cols=279 Identities=12% Similarity=0.022 Sum_probs=215.5
Q ss_pred hcCChhHHHHHHhhcCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHH
Q 011249 191 KCGEVREAKKVFDEISE---PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAIL 267 (490)
Q Consensus 191 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 267 (490)
..|+|..|++...+..+ .....|..-+.+--+.|+.+.+-.++.+..+....++..............|+.+.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 36899999999988655 333455555677778899999999999988764455566677777778889999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCC----C-------hhHHHHHHHHHHhcCChHHHHHHHHH
Q 011249 268 AKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNK----D-------VISYSSMITAFADHGKSQEALDMFLK 336 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-------~~~~~~l~~~~~~~~~~~~a~~~~~~ 336 (490)
..++.+.+ +..+.+......+|.+.|++.....++.++.+. + ..+|+.+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99988887 667778888899999999999999999888773 2 23677777766666666666666666
Q ss_pred HHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCCh
Q 011249 337 MRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDA 414 (490)
Q Consensus 337 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~ 414 (490)
.-.. .+-++..-..++.-+...|+.++|.++..+..+. +..|+.. ..-...+.++.+.-++..++.. .+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 5543 4455666777788888999999999999998885 6666611 2234456677776666665554 34456
Q ss_pred hhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 415 GTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
..+.+|...|.+.+.+.+|.+.|+.+++..|+ .+.|..++.++.+.|+..+|.++.++..-.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 78889999999999999999999999998887 778999999999999999999999876643
No 52
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=3.3e-10 Score=103.44 Aligned_cols=411 Identities=12% Similarity=0.077 Sum_probs=248.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCC
Q 011249 39 QFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARV 116 (490)
Q Consensus 39 ~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 116 (490)
-+=++.+..+++ +++|.+..+++. .|+....+..=+-++.+.+.+++|+.+.+.-... ..+.. |. +=.+|
T Consensus 16 ~t~ln~~~~~~e-~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~-~~-fEKAY--- 87 (652)
T KOG2376|consen 16 LTDLNRHGKNGE-YEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINS-FF-FEKAY--- 87 (652)
T ss_pred HHHHHHhccchH-HHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcch-hh-HHHHH---
Confidence 344567778888 999999988885 4666577888888899999999999666543221 11111 10 23333
Q ss_pred CChHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHH-hcCCh
Q 011249 117 PSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYG-KCGEV 195 (490)
Q Consensus 117 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 195 (490)
+..+.+..|+|+..++-..+.+..+...-...+.+.|++++|+.+|+.+.+.+...+..-+.+-+ ..+-.
T Consensus 88 ---------c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~ 158 (652)
T KOG2376|consen 88 ---------CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA 158 (652)
T ss_pred ---------HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 25688999999999996655666677778888999999999999999997664444433322211 11111
Q ss_pred hHHHHHHhhcCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-------------cccCh-hhHHHHHHHHhcc
Q 011249 196 REAKKVFDEISE---PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQEN-------------VRISE-VAMVGAISACTQL 258 (490)
Q Consensus 196 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------~~p~~-~~~~~l~~~~~~~ 258 (490)
-.+. +.+.... .+-..+......++..|++.+|+++++...+.+ +.-+. ..-..+.-++...
T Consensus 159 l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 159 LQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred hhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 1111 2333332 222333334455666777777777776662211 00000 1122344455666
Q ss_pred CChHHHHHHHHHHHhcCCCCchhH----HHHHHHHHH-------------------------------------------
Q 011249 259 GDVEMAAILAKHVDEGCCDRTNYV----SNALIHMHS------------------------------------------- 291 (490)
Q Consensus 259 g~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~------------------------------------------- 291 (490)
|+-.+|..+|..+.+.. ++|... .|.|+.+-.
T Consensus 238 Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776655 333211 111111100
Q ss_pred --hcCChHHHHHHHhcccCCC-hhHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHhcCCCChHH
Q 011249 292 --KCGYLDLAWREFSRIKNKD-VISYSSMITAF--ADHGKSQEALDMFLKMRNEGIEPNQ--VTFIGVLTACSHGGLVED 364 (490)
Q Consensus 292 --~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 364 (490)
..+..+.+.++...+.... ...+.+++... ++...+..+..++....+. .|.. ......+......|+++.
T Consensus 317 ~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred HHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHH
Confidence 1122223333333322211 22333333322 2223467777777777664 4443 345555666788999999
Q ss_pred HHHHHH--------HHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-----CCCChhhHHHHH----HHHhhh
Q 011249 365 GCKQFE--------LMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-----DFCDAGTWGALL----GACKVH 427 (490)
Q Consensus 365 a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~----~~~~~~ 427 (490)
|.+++. .+.+. +. .+.+...+...+.+.++.+.|..++.+.. ..+.......++ ..-.+.
T Consensus 395 A~~il~~~~~~~~ss~~~~-~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEA-KH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHhhhhhhhhhhh-cc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 999999 45442 33 44556668888888888877777776554 222223333333 334577
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHh
Q 011249 428 VNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMI 474 (490)
Q Consensus 428 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (490)
|+.++|..+++++++.+|++..+...++.+|.+. +.+.|..+-+++
T Consensus 472 G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred CchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999999999999999999999898877 667777776554
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=3.4e-11 Score=107.27 Aligned_cols=377 Identities=11% Similarity=0.018 Sum_probs=246.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhc
Q 011249 37 YAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACA 114 (490)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 114 (490)
.+....+-|-++++ +++|++.+.+.. .|+.+..|.....+|...|+|+++.+--.+..+. .|+- --.+++.
T Consensus 117 ~lK~~GN~~f~~kk-Y~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y--~KAl~RR-- 189 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKK-YDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDY--VKALLRR-- 189 (606)
T ss_pred HHHhhhhhhhhccc-HHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHH--HHHHHHH--
Confidence 34556677788999 999999999986 5663388999999999999999999988887775 4442 2222221
Q ss_pred CCCChHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhCCCh------------HHHHHHHHHhccC---C-
Q 011249 115 RVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNM------------KAAKEFYDRMTEK---N- 178 (490)
Q Consensus 115 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------~~a~~~~~~~~~~---~- 178 (490)
..++-..|++++|+.=.. -..+..++....-. .++.+-+.+=..| +
T Consensus 190 ---------A~A~E~lg~~~eal~D~t---------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~ 251 (606)
T KOG0547|consen 190 ---------ASAHEQLGKFDEALFDVT---------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSA 251 (606)
T ss_pred ---------HHHHHhhccHHHHHHhhh---------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcH
Confidence 122444455554432110 00011111000000 0111111100000 0
Q ss_pred ----------------------chhHHHHHHHH----Hh-cCChhHHHHHHhhcCC-------C---C------HHhHHH
Q 011249 179 ----------------------SVTWVAMIAGY----GK-CGEVREAKKVFDEISE-------P---D------ASCWAA 215 (490)
Q Consensus 179 ----------------------~~~~~~l~~~~----~~-~~~~~~A~~~~~~~~~-------~---~------~~~~~~ 215 (490)
..+...+...+ .. ...+..|...+.+-.. . | ..+...
T Consensus 252 ~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 252 TFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred HHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 00111111111 11 0123333333322111 1 1 122222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 011249 216 MTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGY 295 (490)
Q Consensus 216 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 295 (490)
..-.+.-.|+.-.|..-|+..++....++. .|.-+...|....+.++..+.|....+.+ +-++.+|..-..++.-.++
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHH
Confidence 233345578899999999999987544333 37778888999999999999999999987 6778888888888888999
Q ss_pred hHHHHHHHhcccCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 011249 296 LDLAWREFSRIKNK---DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELM 372 (490)
Q Consensus 296 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 372 (490)
+++|..-|++...- ++..|--+..+..+.+++++++..|++.++. ++--+..|+.....+..+++++.|.+.|+..
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 99999999998773 4556666666777889999999999999986 4445678999999999999999999999999
Q ss_pred HHHcCCCCC---------chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHH
Q 011249 373 TRVFGIKPL---------TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLL 441 (490)
Q Consensus 373 ~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (490)
.+- .|+ +.+...++.. .-.+++..|..++++.. ++.....+..|...-.+.|+.++|+++|++..
T Consensus 489 i~L---E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 489 IEL---EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred Hhh---ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 863 332 2222233222 24589999999998887 34456689999999999999999999999988
Q ss_pred hcCC
Q 011249 442 ELGP 445 (490)
Q Consensus 442 ~~~p 445 (490)
.+-.
T Consensus 565 ~lAr 568 (606)
T KOG0547|consen 565 QLAR 568 (606)
T ss_pred HHHH
Confidence 7543
No 54
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=4.3e-11 Score=104.85 Aligned_cols=321 Identities=11% Similarity=0.123 Sum_probs=163.2
Q ss_pred eehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcC----
Q 011249 69 FLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMA---- 144 (490)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 144 (490)
.+|..+|.++++--..+.|.++|++..+...+.+..+||.+|.+- .|.. ..+++.+|.
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~------------S~~~------~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGAS------------SYSV------GKKLVAEMISQKM 269 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHH------------Hhhc------cHHHHHHHHHhhc
Confidence 456666666666666666666666665555555666666665542 1111 133444443
Q ss_pred CCCHhHHHHHHHHHHhCCChHHHH----HHHHHhc----cCCchhHHHHHHHHHhcCChhH-HHHHHhhcCC--------
Q 011249 145 ERNVISWSAMVAGYANCGNMKAAK----EFYDRMT----EKNSVTWVAMIAGYGKCGEVRE-AKKVFDEISE-------- 207 (490)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~~~~~a~----~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~-------- 207 (490)
.||..|+|+++.+..+.|+++.|. +++.+|+ +|...+|..+|..+.+.++..+ |..++.++..
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 266666666666666666554433 3333333 2455556666665555555433 3333332211
Q ss_pred ----CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc---C-cccCh---hhHHHHHHHHhccCChHHHHHHHHHHHhcCC
Q 011249 208 ----PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQE---N-VRISE---VAMVGAISACTQLGDVEMAAILAKHVDEGCC 276 (490)
Q Consensus 208 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 276 (490)
.+...|..-+..|.+..+.+.|.++-.-+... . +.|+. .-|..+....++....+....+|+.+.-.-.
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 23334445555555555555555543333211 0 11221 2233444445555555555566666555544
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcccCCC----hhHHHHHHHHHHhcC--------------------C-hHHHH
Q 011249 277 DRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKD----VISYSSMITAFADHG--------------------K-SQEAL 331 (490)
Q Consensus 277 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~--------------------~-~~~a~ 331 (490)
-|+..+...++++..-.|.++-.-+++.++..-+ .....-+...+++.+ + .+...
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555444311 000011111111111 1 11112
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHH---HHHHHHhhcCChHHHHHHHHhc
Q 011249 332 DMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLT---CMVDLLGRSGQLEKAHSLIMDY 408 (490)
Q Consensus 332 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 408 (490)
..-.+|.+. .......+.++..+.+.|+.++|.+++..+.+.++-.|.....+ -+++.-.+..+...|...++-+
T Consensus 510 ~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 510 SQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 222233433 33445566666677888999999999988866544455555555 4555666778888888888877
Q ss_pred c
Q 011249 409 K 409 (490)
Q Consensus 409 ~ 409 (490)
.
T Consensus 588 ~ 588 (625)
T KOG4422|consen 588 S 588 (625)
T ss_pred H
Confidence 5
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=4.6e-12 Score=110.51 Aligned_cols=198 Identities=13% Similarity=0.044 Sum_probs=156.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 011249 279 TNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTA 355 (490)
Q Consensus 279 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 355 (490)
....+..+...+...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345566677778888888888888877654 245677778888888899999999998888753 2345567777788
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHH
Q 011249 356 CSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELG 433 (490)
Q Consensus 356 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 433 (490)
+...|++++|.+.++++......+.....+..+..++...|++++|...+++.. .+.+...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 888899999999999887631223334566778888999999999999998776 333466788888889999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 434 EIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 434 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
...++++.+..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988888888888999999999999999998877643
No 56
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.49 E-value=4.4e-10 Score=105.83 Aligned_cols=362 Identities=12% Similarity=0.055 Sum_probs=250.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHhccC-----CchhHHHHHHHHHh-c
Q 011249 122 AVICGYTKIGLMDDAQRLFDSMAE---RNVISWSAMVAGYANCGNMKAAKEFYDRMTEK-----NSVTWVAMIAGYGK-C 192 (490)
Q Consensus 122 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~-~ 192 (490)
.+.-+....|+++.+-+.|++... .....|+.+...+...|.-..|+.++++-..+ |+..+......|.+ .
T Consensus 328 ~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l 407 (799)
T KOG4162|consen 328 HLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERL 407 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhch
Confidence 344457888999999999998876 45678999999999999999999999887743 34444444455544 4
Q ss_pred CChhHHHHHHhhcCC--------CCHHhHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCcccChhhHHHHHH
Q 011249 193 GEVREAKKVFDEISE--------PDASCWAAMTVCYVQN-----------GYAKAAIEMYKVMRQENVRISEVAMVGAIS 253 (490)
Q Consensus 193 ~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 253 (490)
+.+++++.+-.++.. ..+..|..+.-+|... ....++++.+++..+.+.. |+.....+.-
T Consensus 408 ~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lal 486 (799)
T KOG4162|consen 408 KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLAL 486 (799)
T ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 556665555544432 3445555555555322 2235678888888765432 3333333444
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--CC-----------------h---
Q 011249 254 ACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--KD-----------------V--- 311 (490)
Q Consensus 254 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-----------------~--- 311 (490)
-|+..++++.|....++..+.+...++..|..|.-.+...+++.+|+.+.+.... ++ .
T Consensus 487 q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~ 566 (799)
T KOG4162|consen 487 QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEA 566 (799)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHH
Confidence 5777889999999999999986678888999898899999999999988876553 11 0
Q ss_pred -hHHHHHHHHHH-----------------------hcCChHHHHHHHHHHH--------HcC---------CC--Cc---
Q 011249 312 -ISYSSMITAFA-----------------------DHGKSQEALDMFLKMR--------NEG---------IE--PN--- 345 (490)
Q Consensus 312 -~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~--------~~~---------~~--p~--- 345 (490)
.+...++..+- ..++..++.+....+. ..| +. |+
T Consensus 567 l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 567 LDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLW 646 (799)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchH
Confidence 11111111111 0111222222211111 011 01 11
Q ss_pred ---HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHH
Q 011249 346 ---QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGAL 420 (490)
Q Consensus 346 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 420 (490)
...|......+...+..++|...+.+... ..+.....|......+...|.+++|.+.|.... .+.++....++
T Consensus 647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 647 YLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 11334455567788888899888888876 455667778888888999999999999997766 45567799999
Q ss_pred HHHHhhhCChHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccccCCCccc
Q 011249 421 LGACKVHVNAELGEI--AARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSW 487 (490)
Q Consensus 421 ~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 487 (490)
...+.+.|+...|.. ++..+++.+|.++.+|..++.++.+.|+.++|-+.|+...+... .+|=.+|
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~PV~pF 792 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SNPVLPF 792 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CCCcccc
Confidence 999999999998888 99999999999999999999999999999999999998776643 3444443
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.7e-12 Score=109.58 Aligned_cols=228 Identities=11% Similarity=0.013 Sum_probs=127.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc
Q 011249 214 AAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKC 293 (490)
Q Consensus 214 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 293 (490)
+.+.++|.+.|-+.+|.+.++.-.+. .|-+.||..|..+|.+..+++.|..++.+-.+.- |.++.......+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea- 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA- 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH-
Confidence 34556666666666666666655544 3444555556666666666666666655555442 3333333334444444
Q ss_pred CChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 011249 294 GYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMT 373 (490)
Q Consensus 294 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 373 (490)
.++.++|.++|+...+.. +.+.....++...|.-.++++.|+.+++++.
T Consensus 303 ------------------------------m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 303 ------------------------------MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred ------------------------------HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 444555555555544421 1122344444444555555555555555555
Q ss_pred HHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc---CCC--ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCC
Q 011249 374 RVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK---DFC--DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKT 448 (490)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 448 (490)
.. |. .+++.|+.+.-+|.-.+++|-++.-|++.. ..| ...+|..+.......||+..|.+.|+-++..+|++.
T Consensus 352 qm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 352 QM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred Hh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 52 33 234455555555555555555555554433 112 234666666666667777777777777777777777
Q ss_pred chHHHHHHHHHhcCCcchHHHHHHHhhhcc
Q 011249 449 GNSALLANIYASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 478 (490)
..+++|+-.-.+.|+.++|..+++......
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 777777777777777777777777665443
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=8.7e-11 Score=114.97 Aligned_cols=260 Identities=12% Similarity=-0.021 Sum_probs=186.6
Q ss_pred CCHHhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCcccChhhHHHHHHHHh---------ccCChHHHHHHHHHHHh
Q 011249 208 PDASCWAAMTVCYVQ-----NGYAKAAIEMYKVMRQENVRISEVAMVGAISACT---------QLGDVEMAAILAKHVDE 273 (490)
Q Consensus 208 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~ 273 (490)
.+...|...+.+-.. .+.+++|++.|++..+.... +...+..+..++. ..+++++|...++++.+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 345555555555322 23467899999999876322 3445555554443 33458899999999998
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-HH
Q 011249 274 GCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--K-DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQV-TF 349 (490)
Q Consensus 274 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~ 349 (490)
.. |.+...+..+..++...|++++|...|++..+ | +...+..+..++...|++++|...++++.+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 86 66788888889999999999999999999876 4 4567888899999999999999999999984 55432 33
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCCChh-hHHHHHHHHhhh
Q 011249 350 IGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCDAG-TWGALLGACKVH 427 (490)
Q Consensus 350 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~ 427 (490)
..++..+...|++++|...++++.+. ..+.++..+..+..++...|++++|...++++. ..|+.. ..+.+...+...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 33444466688999999999998773 222345557778889999999999999998876 334433 444555556666
Q ss_pred CChHHHHHHHHHHHhcC---CCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcc
Q 011249 428 VNAELGEIAARHLLELG---PEKTGNSALLANIYASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 428 g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 478 (490)
| ++|...++++.+.. |.++.. +..++.-.|+.+.+... +++.+.+
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 6 58888888877633 444443 66677777887777776 7777654
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.45 E-value=3.2e-09 Score=98.09 Aligned_cols=111 Identities=9% Similarity=0.122 Sum_probs=68.2
Q ss_pred CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCCCCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCCHh
Q 011249 31 HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLG------VLTSGF 104 (490)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~ 104 (490)
.+.. +|...+...-..+- ++.+..++++-..-++ ..-+--|..++..+++++|.+.+....... .+.+..
T Consensus 136 qH~r--IW~lyl~Fv~~~~l-Pets~rvyrRYLk~~P-~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~q 211 (835)
T KOG2047|consen 136 QHDR--IWDLYLKFVESHGL-PETSIRVYRRYLKVAP-EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQ 211 (835)
T ss_pred hhcc--chHHHHHHHHhCCC-hHHHHHHHHHHHhcCH-HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhh
Confidence 4444 67777777777776 7777777776554444 445666666777777777777776654321 122333
Q ss_pred hHHHHHHHhcCCCChH------------------------HHHHHHHHhcCCHHHHHHHHhhcCC
Q 011249 105 TFSSVLNACARVPSLL------------------------EAVICGYTKIGLMDDAQRLFDSMAE 145 (490)
Q Consensus 105 ~~~~ll~~~~~~~~~~------------------------~~l~~~~~~~g~~~~A~~~~~~~~~ 145 (490)
.|..+-...++.++.. .+|..-|.+.|.+++|..+|++...
T Consensus 212 lw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 212 LWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3444433333333222 6677888888888888888887764
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.44 E-value=2.3e-11 Score=113.45 Aligned_cols=231 Identities=15% Similarity=0.104 Sum_probs=167.6
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhc-----C-CCCchh-HHHHHHHHHHhcCChHHHHHHHhcccC-------C--
Q 011249 246 VAMVGAISACTQLGDVEMAAILAKHVDEG-----C-CDRTNY-VSNALIHMHSKCGYLDLAWREFSRIKN-------K-- 309 (490)
Q Consensus 246 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~-- 309 (490)
.+...+...|...|+++.|..++++..+. | ..|... ..+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777777778888877777776544 1 122222 233466778888888888888877653 1
Q ss_pred --ChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCC-CcHH-HHHHHHHHhcCCCChHHHHHHHHHHHHHcC--C
Q 011249 310 --DVISYSSMITAFADHGKSQEALDMFLKMRN-----EGIE-PNQV-TFIGVLTACSHGGLVEDGCKQFELMTRVFG--I 378 (490)
Q Consensus 310 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~ 378 (490)
-..+++.|..+|.+.|++++|..++++..+ .|.. |... -++.+...|...+++++|..+++...+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 234677788888889998888888777654 1222 2222 456667778889999999999988777543 2
Q ss_pred CCC----chHHHHHHHHHhhcCChHHHHHHHHhcc-------C--CC-ChhhHHHHHHHHhhhCChHHHHHHHHHHHh--
Q 011249 379 KPL----TEHLTCMVDLLGRSGQLEKAHSLIMDYK-------D--FC-DAGTWGALLGACKVHVNAELGEIAARHLLE-- 442 (490)
Q Consensus 379 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 442 (490)
.++ ..+++.|...|...|++++|.++++++. . .+ ....++.+...|.+.+.+++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 4568889999999999999999998776 1 12 245778888999999999999999988765
Q ss_pred --cCCCC---CchHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 443 --LGPEK---TGNSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 443 --~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
.+|++ ...|..|+.+|.+.|++++|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34554 45888999999999999999999987763
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=7.7e-10 Score=100.64 Aligned_cols=279 Identities=13% Similarity=0.025 Sum_probs=222.6
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHH
Q 011249 178 NSVTWVAMIAGYGKCGEVREAKKVFDEISE---PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISA 254 (490)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 254 (490)
+........+-+...+++.+..++++.+.+ +....+-.-|.++...|+..+-..+=.++++.- +-.+.+|..+.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence 666667777888889999999999999876 445566666778889999998888888888764 3367889999988
Q ss_pred HhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--C-ChhHHHHHHHHHHhcCChHHHH
Q 011249 255 CTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--K-DVISYSSMITAFADHGKSQEAL 331 (490)
Q Consensus 255 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~ 331 (490)
|...|+.++|.++|.+..... +.-...|..+...|.-.|.-++|+..+....+ + .-..+--+.--|.+.++...|.
T Consensus 322 Yl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 999999999999999987765 34456788899999999999999998877655 2 2222333444678889999999
Q ss_pred HHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc-CC---C-CCchHHHHHHHHHhhcCChHHHHHHH
Q 011249 332 DMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVF-GI---K-PLTEHLTCMVDLLGRSGQLEKAHSLI 405 (490)
Q Consensus 332 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~---~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 405 (490)
+.|.+... +.| |+...+-+.-.....+.+.+|..+|+...... .. . -...+++.|..+|.+.+++++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999887 455 55677777777777899999999999887421 01 1 13456788999999999999999999
Q ss_pred Hhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 011249 406 MDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYAS 460 (490)
Q Consensus 406 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 460 (490)
++.. .+.+..++.++.-.+...|+++.|++.|.+++.+.|++..+-..|..+...
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 8876 566888999999999999999999999999999999988777777655443
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=8e-09 Score=90.55 Aligned_cols=272 Identities=11% Similarity=0.010 Sum_probs=210.4
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHh---HHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHH
Q 011249 178 NSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASC---WAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISA 254 (490)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 254 (490)
|+.....+.+++...|+.++|+..|++..-.|+.+ .......+.+.|+.++...+...+.... .-+...|..-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 78888999999999999999999999877644433 3334455677899998888888877542 1233334444444
Q ss_pred HhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHH
Q 011249 255 CTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEAL 331 (490)
Q Consensus 255 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 331 (490)
....++++.|..+-++..+.. +.+...+-.-...+...++.++|.-.|+.... -+...|..|+..|...|++.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 566788999999988887765 45566666667788889999999999987654 37789999999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHH-HHhc-CCCChHHHHHHHHHHHHHcCCCCC-chHHHHHHHHHhhcCChHHHHHHHHhc
Q 011249 332 DMFLKMRNEGIEPNQVTFIGVL-TACS-HGGLVEDGCKQFELMTRVFGIKPL-TEHLTCMVDLLGRSGQLEKAHSLIMDY 408 (490)
Q Consensus 332 ~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 408 (490)
..-+...+. +.-+..+...+. ..|. ...--++|.+++++..+ +.|+ ....+.+...+...|+.+.++.+++..
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 888877664 344555665553 3333 33445789999988865 4554 556677889999999999999999876
Q ss_pred c-CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 011249 409 K-DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLA 455 (490)
Q Consensus 409 ~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 455 (490)
. +.||....+.|...+...+.+++|.+.|..++.++|++-.....|-
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 6 7899999999999999999999999999999999999887666664
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=5.5e-11 Score=103.70 Aligned_cols=199 Identities=15% Similarity=0.083 Sum_probs=102.5
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 011249 210 ASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHM 289 (490)
Q Consensus 210 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (490)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455566666666666666666666665542 1234455555555666666666666666655543 2333344444444
Q ss_pred HHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHH
Q 011249 290 HSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQ 368 (490)
Q Consensus 290 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 368 (490)
+...|+ +++|...+++..+....| ....+..+...+...|++++|...
T Consensus 109 ~~~~g~-------------------------------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 109 LCQQGK-------------------------------YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHHccc-------------------------------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444 455554444444321111 122334444455555555555555
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhc
Q 011249 369 FELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLEL 443 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (490)
+++..+ ..+.+...+..+...+...|++++|...+++.. .+.++..+..++..+...|+.+.|..+.+.+...
T Consensus 158 ~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 555554 222234445555555555666666665555443 1223344444455555566666666665555443
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=6.3e-09 Score=96.15 Aligned_cols=452 Identities=15% Similarity=0.172 Sum_probs=283.7
Q ss_pred hhhhhchhhHHHHHHHHhhhcCCC------CchhHhHHHHHHHHHhcCCCCHHH---HHHHhccCCC--CC-CceehHHH
Q 011249 7 VPRSKTFNQLKQVHSYLLKTLTKP------HDQYHYYAQFLIRLLQLPGDNLSY---ARQVFDQIPK--CK-TQFLWTSL 74 (490)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~---A~~~~~~~~~--~~-~~~~~~~l 74 (490)
|...++...+.+.+..+.- .+ ..+.|+.|..+.+...++.+ .-. .-.+++.+.. +| ....|++|
T Consensus 179 L~~~d~~~eaa~~la~vln---~d~f~sk~gkSn~qlw~elcdlis~~p~-~~~slnvdaiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLN---QDEFVSKKGKSNHQLWLELCDLISQNPD-KVQSLNVDAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred HHhccchHHHHHHHHHhcC---chhhhhhcccchhhHHHHHHHHHHhCcc-hhcccCHHHHHHhhcccCcHHHHHHHHHH
Confidence 3344455555555544433 22 22223488888888888765 222 2334444432 22 22579999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChH-HHHHHHHH--hcC------CHHHHHHHHhhcCC
Q 011249 75 IRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLL-EAVICGYT--KIG------LMDDAQRLFDSMAE 145 (490)
Q Consensus 75 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~~l~~~~~--~~g------~~~~A~~~~~~~~~ 145 (490)
..-|.+.|.+++|.++|++.... ..+...|..+.++++...... .+.+. .. ..| +++-....|+.+..
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 99999999999999999998775 446666777777765543322 12222 11 122 23334455555543
Q ss_pred --------------C-CHhHHHHHHHHHHhCCChHHHHHHHHHhccC---------CchhHHHHHHHHHhcCChhHHHHH
Q 011249 146 --------------R-NVISWSAMVAGYANCGNMKAAKEFYDRMTEK---------NSVTWVAMIAGYGKCGEVREAKKV 201 (490)
Q Consensus 146 --------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~ 201 (490)
| ++..|..-+.. ..|+..+-...|.++.+. -...|..+.+.|-..|+++.|..+
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 1 34455554443 367788888888887742 234688899999999999999999
Q ss_pred HhhcCCCC-------HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcc----------c-------ChhhHHHHHHHHhc
Q 011249 202 FDEISEPD-------ASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVR----------I-------SEVAMVGAISACTQ 257 (490)
Q Consensus 202 ~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------p-------~~~~~~~l~~~~~~ 257 (490)
|++..+.+ ..+|......-.+..+++.|+++++......-. | +...|...+..--.
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 99988722 235555566666778899999988876532111 1 12234444455556
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC----CCh-hHHHHHHHHHHh---cCChHH
Q 011249 258 LGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN----KDV-ISYSSMITAFAD---HGKSQE 329 (490)
Q Consensus 258 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~-~~~~~l~~~~~~---~~~~~~ 329 (490)
.|-++....+|+.+.+..+. ++.+.......+....-++++.++|++-.. |++ ..|+.-+.-+.+ ...++.
T Consensus 490 ~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 68888899999999887743 344333345555666778999999998765 444 356665554443 236899
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHH--HHhcCCCChHHHHHHHHHHHHHcCCCCC--chHHHHHHHHHhhcCChHHHHHHH
Q 011249 330 ALDMFLKMRNEGIEPNQVTFIGVL--TACSHGGLVEDGCKQFELMTRVFGIKPL--TEHLTCMVDLLGRSGQLEKAHSLI 405 (490)
Q Consensus 330 a~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 405 (490)
|..+|++.++ |.+|...-+..|+ ..-.+.|-...|+.+++++.. ++++. ...|+..|.--...=-......+|
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iY 645 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIY 645 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHH
Confidence 9999999999 6777654333333 223456888899999999876 55554 445666554333322233344455
Q ss_pred Hhcc-CCCChhhHHH---HHHHHhhhCChHHHHHHHHHHHhcC-CC-CCchHHHHHHHHHhcCCcchHHHHH
Q 011249 406 MDYK-DFCDAGTWGA---LLGACKVHVNAELGEIAARHLLELG-PE-KTGNSALLANIYASMGKWKDSEIVK 471 (490)
Q Consensus 406 ~~~~-~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (490)
++.. .-|+...-.. ....-.+.|..++|..++.-..++- |. ++.+|.+.-..-.+.|+-+...+++
T Consensus 646 ekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 646 EKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4443 2344443332 3344467899999999999888854 53 5678888888888889844444443
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=7.6e-12 Score=105.68 Aligned_cols=196 Identities=11% Similarity=0.043 Sum_probs=165.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcccC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHH-HHHHHH
Q 011249 279 TNYVSNALIHMHSKCGYLDLAWREFSRIKN--KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTF-IGVLTA 355 (490)
Q Consensus 279 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~ 355 (490)
|-.--+.+..+|.+.|.+.+|.+.|+...+ |-+.||..|-.+|.+..++..|+.++.+-.+. .|..+|| ....+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 333445688899999999999999988765 78889999999999999999999999999884 6766665 456677
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHH
Q 011249 356 CSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELG 433 (490)
Q Consensus 356 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 433 (490)
+...++.++|.++++.+.+ ..+.+++...++...|.-.++++-|+.+|+++. ..-++..|+.+.-.|.-.++++-+
T Consensus 300 ~eam~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 8888999999999999998 456677777788888899999999999999887 346788999999999999999999
Q ss_pred HHHHHHHHhcC--CC-CCchHHHHHHHHHhcCCcchHHHHHHHhhhcc
Q 011249 434 EIAARHLLELG--PE-KTGNSALLANIYASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 434 ~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 478 (490)
+..|++++... |+ -..+|.+++.+....|+..-|.+.|+.....+
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 99999999853 43 46799999999999999999999998776554
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.7e-09 Score=91.92 Aligned_cols=394 Identities=12% Similarity=0.015 Sum_probs=249.5
Q ss_pred HhcCChhHHHHHHHHHHhc---CCCCCHhhHHHHHHHhcCCCChH--HHHHHHHHhcCCHHHHHHHHhhcCCC-CHhHHH
Q 011249 79 VLHAHFRQSILLYAKMHRL---GVLTSGFTFSSVLNACARVPSLL--EAVICGYTKIGLMDDAQRLFDSMAER-NVISWS 152 (490)
Q Consensus 79 ~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 152 (490)
.....+..|.+-|...... .+.|...+..++=...+..++.. ...+..|-..++-+.|...+...+.. ...--|
T Consensus 54 ~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~in 133 (564)
T KOG1174|consen 54 YKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRIN 133 (564)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHH
Confidence 3445566666666665443 23344444433333344444433 44566788889999999888887763 223333
Q ss_pred HHHHHHHhCC-ChHHHHHHHHHhcc--------------------------------C-CchhHHHHHHHHHh--cCChh
Q 011249 153 AMVAGYANCG-NMKAAKEFYDRMTE--------------------------------K-NSVTWVAMIAGYGK--CGEVR 196 (490)
Q Consensus 153 ~l~~~~~~~~-~~~~a~~~~~~~~~--------------------------------~-~~~~~~~l~~~~~~--~~~~~ 196 (490)
.++.-+...| +-.++.--+.+... + +..+....+.+++. .++..
T Consensus 134 lMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs 213 (564)
T KOG1174|consen 134 LMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHS 213 (564)
T ss_pred HHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccc
Confidence 3333333332 22122211221111 0 11122223333332 34433
Q ss_pred HHHHHHhhcC-----CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccCh-hhHHHHHHHHhccCChHHHHHHHHH
Q 011249 197 EAKKVFDEIS-----EPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISE-VAMVGAISACTQLGDVEMAAILAKH 270 (490)
Q Consensus 197 ~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 270 (490)
.|...+-.+. ..|+.....+..++...|+.++|+..|++.... .|+. .......-.+...|+.+....+...
T Consensus 214 ~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~ 291 (564)
T KOG1174|consen 214 DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDY 291 (564)
T ss_pred hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHH
Confidence 4433332222 256777888889999999999999988887754 3332 2222223334667777777777776
Q ss_pred HHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cH
Q 011249 271 VDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNK---DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQ 346 (490)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~ 346 (490)
+.... ......|-.-+.......+++.|+.+-++...- +...+-.-...+...|++++|.-.|+..+. +.| +.
T Consensus 292 Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL 368 (564)
T KOG1174|consen 292 LFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRL 368 (564)
T ss_pred HHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhH
Confidence 65443 122222222334445567888888888877653 444555555678889999999999999887 455 56
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHH-HHHh-hcCChHHHHHHHHhcc-CCCC-hhhHHHHHH
Q 011249 347 VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMV-DLLG-RSGQLEKAHSLIMDYK-DFCD-AGTWGALLG 422 (490)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~ 422 (490)
..|..|+.+|...|++.+|...-....+ -++.+..+...+. ..+. .-..-++|.+++++.. ..|+ ....+.+..
T Consensus 369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 369 EIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAE 446 (564)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence 7999999999999999999888877776 4555555555442 2222 2234588999998765 4554 457777888
Q ss_pred HHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccc
Q 011249 423 ACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKK 480 (490)
Q Consensus 423 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 480 (490)
.|...|..+.++.++++.+...|+ ......|+.++...+.+++|...|......+++
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999998 677899999999999999999999988766554
No 67
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.39 E-value=9.2e-10 Score=105.13 Aligned_cols=442 Identities=12% Similarity=0.018 Sum_probs=256.7
Q ss_pred HHHHhhhcCCC--CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCC----------------------------CCCCce
Q 011249 20 HSYLLKTLTKP--HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIP----------------------------KCKTQF 69 (490)
Q Consensus 20 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~----------------------------~~~~~~ 69 (490)
+..++. .| |+-+ +|..+|.-||..|+ .+.|- +|..|. .|.. .
T Consensus 13 la~~e~---~gi~PnRv--tyqsLiarYc~~gd-ieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~a-D 84 (1088)
T KOG4318|consen 13 LALHEI---SGILPNRV--TYQSLIARYCTKGD-IEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLA-D 84 (1088)
T ss_pred HHHHHH---hcCCCchh--hHHHHHHHHcccCC-Ccccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCch-h
Confidence 344444 55 8889 99999999999999 88887 776653 1222 5
Q ss_pred ehHHHHHHHHhcCChhH---HHHHHHHH----HhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhh
Q 011249 70 LWTSLIRNHVLHAHFRQ---SILLYAKM----HRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDS 142 (490)
Q Consensus 70 ~~~~l~~~~~~~g~~~~---A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (490)
+|+.|..+|...||..- ..+.++.. ...|+.....-+-..+.+|.+.-.-....+....-.|-++.+++++..
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67777777777766433 22222221 223444333334344444444333334555556666777777777776
Q ss_pred cCCC---CHhHHHHHHHHHHhCC-ChHHHHHHHHHhcc-CCchhHHHHHHHHHhcCChhHHHHHHhhcCC----CCHHhH
Q 011249 143 MAER---NVISWSAMVAGYANCG-NMKAAKEFYDRMTE-KNSVTWVAMIAGYGKCGEVREAKKVFDEISE----PDASCW 213 (490)
Q Consensus 143 ~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~ 213 (490)
++.. ++... .++-+.... .+++-....+...+ +++.+|..+++.-...|+.+.|..++.+|.+ -+.+-|
T Consensus 165 ~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 165 VPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred CCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 6541 11111 233333332 34455555555554 7889999999999999999999999999976 234444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHH------------------------HHHHHH
Q 011249 214 AAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEM------------------------AAILAK 269 (490)
Q Consensus 214 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~------------------------a~~~~~ 269 (490)
..|+-+ .++...+..+++-|...|+.|+..|+...+-.+.+.|.... |.+.++
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~ 319 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLR 319 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHH
Confidence 455544 78888888899999999999999888876666555322111 111111
Q ss_pred HHH------------hcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCC-------ChhHHHHHHHHHHhcC-----
Q 011249 270 HVD------------EGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNK-------DVISYSSMITAFADHG----- 325 (490)
Q Consensus 270 ~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~----- 325 (490)
.-. =.|+.....+|...+. ...+|.-++.+++-..+..| ++..|..++.-|.+.-
T Consensus 320 ~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~ 398 (1088)
T KOG4318|consen 320 QNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHIC 398 (1088)
T ss_pred HHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHH
Confidence 100 0122222233332222 22356666666666555442 3334444443333211
Q ss_pred -----------------ChHHHHHHHHHHHHcCCCCcH----------------------------HHHHHHHHHhcCCC
Q 011249 326 -----------------KSQEALDMFLKMRNEGIEPNQ----------------------------VTFIGVLTACSHGG 360 (490)
Q Consensus 326 -----------------~~~~a~~~~~~~~~~~~~p~~----------------------------~~~~~l~~~~~~~g 360 (490)
...+..++.... .||. ..-+.++..|++.-
T Consensus 399 ~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~ 473 (1088)
T KOG4318|consen 399 SRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEY 473 (1088)
T ss_pred HHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 111111111111 2221 11222333333333
Q ss_pred ChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-----CCCChhhHHHHHHHHhhhCChHHHHH
Q 011249 361 LVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-----DFCDAGTWGALLGACKVHVNAELGEI 435 (490)
Q Consensus 361 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (490)
+..+++..-++.... -+ +..|..|+..+....+.+.|..+.++.. ...+..-+..+.+...+.+....+..
T Consensus 474 n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 474 NKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 444444333333331 11 2667888888888888999998888876 22355567778888888888999999
Q ss_pred HHHHHHhc---CCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccccCCCc
Q 011249 436 AARHLLEL---GPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGC 485 (490)
Q Consensus 436 ~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 485 (490)
+++++.+. .|........+.+.....|+.+...+..+-+...|+.- +|.
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgP 601 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGP 601 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-ccc
Confidence 99888773 24445566667777788899988888888888777755 343
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=6.4e-11 Score=115.91 Aligned_cols=211 Identities=9% Similarity=-0.081 Sum_probs=167.0
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh---------cCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCC
Q 011249 259 GDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSK---------CGYLDLAWREFSRIKN---KDVISYSSMITAFADHGK 326 (490)
Q Consensus 259 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 326 (490)
+++++|..++++..+.. |.+...+..+..+|.. .+++++|...+++..+ .+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45689999999998876 4556666666665542 2457899999998876 367788888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCc-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC-chHHHHHHHHHhhcCChHHHHHH
Q 011249 327 SQEALDMFLKMRNEGIEPN-QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL-TEHLTCMVDLLGRSGQLEKAHSL 404 (490)
Q Consensus 327 ~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 404 (490)
+++|...|+++.+. .|+ ...+..+...+...|++++|...++++.+. .|+ ...+..++..+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999985 565 457778888899999999999999999873 343 33334445567778999999999
Q ss_pred HHhcc--CCC-ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 405 IMDYK--DFC-DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 405 ~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
+++.. .+| ++..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++++.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98875 234 34456777788889999999999999998888988888888988888888 4888888877654
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.37 E-value=4.5e-10 Score=100.71 Aligned_cols=232 Identities=10% Similarity=-0.062 Sum_probs=156.9
Q ss_pred CChHHHHHHHHHHHHcC-cccC--hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHH
Q 011249 224 GYAKAAIEMYKVMRQEN-VRIS--EVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAW 300 (490)
Q Consensus 224 g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 300 (490)
++.+.++.-+.++.... ..|+ ...|..+...+...|++++|...|++..+.. |.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45667777777777432 2222 3457777777888888888888888888876 566788888888899999999999
Q ss_pred HHHhcccC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcC
Q 011249 301 REFSRIKN--K-DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFG 377 (490)
Q Consensus 301 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 377 (490)
..|++..+ | +..+|..+..++...|++++|.+.+++..+. .|+..........+...++.++|...+.+... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 98888865 3 4567888888888899999999999998874 55433222222234456789999999977655 3
Q ss_pred CCCCchHHHHHHHHHhhcCChHHH--HHHHHhc-c-----CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCC-CCC
Q 011249 378 IKPLTEHLTCMVDLLGRSGQLEKA--HSLIMDY-K-----DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGP-EKT 448 (490)
Q Consensus 378 ~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~-~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~~~ 448 (490)
.+|+...+ .+.. ...|+..++ .+.+.+. . .+.....|..+...+...|++++|+..|+++++.+| +.+
T Consensus 195 ~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33433222 2232 334554433 3222221 1 112345788889999999999999999999999996 555
Q ss_pred chHHHHHHHHHhcCC
Q 011249 449 GNSALLANIYASMGK 463 (490)
Q Consensus 449 ~~~~~l~~~~~~~g~ 463 (490)
.....++......++
T Consensus 272 e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 272 EHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHHhh
Confidence 555556655444333
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=5e-09 Score=98.95 Aligned_cols=399 Identities=14% Similarity=0.082 Sum_probs=266.5
Q ss_pred CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCCC--CCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHH
Q 011249 31 HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPK--CKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSS 108 (490)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 108 (490)
.++. +|.+|.=+....|+ ++.+.+.|++... -+....|+.+...+...|.-..|+.+++.-....-+|+..+--.
T Consensus 321 nd~a--i~d~Lt~al~~~g~-f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 321 NDAA--IFDHLTFALSRCGQ-FEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred chHH--HHHHHHHHHHHHHH-HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 5888 99999999999999 9999999998752 22226799999999999999999999988655433354333322
Q ss_pred -HHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC--------CCHhHHHHHHHHHHhCC-----------ChHHHH
Q 011249 109 -VLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE--------RNVISWSAMVAGYANCG-----------NMKAAK 168 (490)
Q Consensus 109 -ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~-----------~~~~a~ 168 (490)
.-+.| +.+.|.+++++..-.++.. -....|..+.-+|...- ...+++
T Consensus 398 masklc-------------~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 398 MASKLC-------------IERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred HHHHHH-------------HhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 22333 4455667776666555543 24556666666655421 245678
Q ss_pred HHHHHhccC---CchhHHHHHHHHHhcCChhHHHHHHhhcCC----CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCc
Q 011249 169 EFYDRMTEK---NSVTWVAMIAGYGKCGEVREAKKVFDEISE----PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENV 241 (490)
Q Consensus 169 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 241 (490)
+.+++..+. |+.+...+.--|+..++++.|.+...+..+ .+...|..|+-++...+++.+|+.+.+.....-.
T Consensus 465 qale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 465 QALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 888888653 555555555667788899999888877654 6788999999999999999999999888765311
Q ss_pred ccChhhHHHHHHHHhccCChHHHHHHHHHHHhc---------------------CC-------CCchhHHHHHHHHHH--
Q 011249 242 RISEVAMVGAISACTQLGDVEMAAILAKHVDEG---------------------CC-------DRTNYVSNALIHMHS-- 291 (490)
Q Consensus 242 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------~~-------~~~~~~~~~l~~~~~-- 291 (490)
. |-.....-++.-...++.+++.....++... |. ...+.++..+.....
T Consensus 545 ~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 545 D-NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred h-hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 1 1111111122222345555554443332211 00 001112222211111
Q ss_pred -hcCChHHHHHHHhcccCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHH
Q 011249 292 -KCGYLDLAWREFSRIKNKD------VISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVED 364 (490)
Q Consensus 292 -~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 364 (490)
+.-..+.....+.....|+ ...|......+.+.+..++|...+.+.... .......|......+...|.+++
T Consensus 624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHH
Confidence 1111111111122222222 234666777888999999999988888763 23345577777777888999999
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHH--HHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHH
Q 011249 365 GCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHS--LIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHL 440 (490)
Q Consensus 365 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (490)
|.+.|..... -.|.++....++..++.+.|+..-|.. ++..+. ++.++..|..+...+...|+.+.|.+.|.-+
T Consensus 703 A~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 703 AKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9999998875 334457788899999999998888877 776665 5668889999999999999999999999999
Q ss_pred HhcCCCCCc
Q 011249 441 LELGPEKTG 449 (490)
Q Consensus 441 ~~~~p~~~~ 449 (490)
.++++.+|.
T Consensus 781 ~qLe~S~PV 789 (799)
T KOG4162|consen 781 LQLEESNPV 789 (799)
T ss_pred HhhccCCCc
Confidence 998876663
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=1.3e-10 Score=104.19 Aligned_cols=215 Identities=13% Similarity=0.077 Sum_probs=157.7
Q ss_pred cCChHHHHHHHHHHHhcC-CC--CchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHH
Q 011249 258 LGDVEMAAILAKHVDEGC-CD--RTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEAL 331 (490)
Q Consensus 258 ~g~~~~a~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 331 (490)
.+..+.+..-+.++.... .. .....|..+...|...|+.++|...|++..+ .++..|+.+...+...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 356677777787777543 12 2245677888899999999999999998876 36789999999999999999999
Q ss_pred HHHHHHHHcCCCCc-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccC
Q 011249 332 DMFLKMRNEGIEPN-QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKD 410 (490)
Q Consensus 332 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 410 (490)
..|++..+ +.|+ ...+..+..++...|++++|.+.+++..+. .|+..........+...+++++|...|.+...
T Consensus 119 ~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 119 EAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999998 4665 457788888889999999999999999873 34332222222334567889999999966542
Q ss_pred CCChhhHHHHHHHHhhhCChHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 411 FCDAGTWGALLGACKVHVNAELGEIAARHLL-------ELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
..++..|. ........|+...+ +.++.+. +..|..+.+|..++.++.+.|++++|...|++..+.++
T Consensus 194 ~~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 194 KLDKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hCCccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 21222232 12233345555443 2444443 45567778999999999999999999999999987765
No 72
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.34 E-value=3.3e-10 Score=108.05 Aligned_cols=267 Identities=13% Similarity=0.128 Sum_probs=157.5
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCC----CHhHHHHHHHHHHhCCCh
Q 011249 89 LLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAER----NVISWSAMVAGYANCGNM 164 (490)
Q Consensus 89 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~ 164 (490)
.++..+...|+.|+..||..+|.. |+..|+++.|- +|.-|.-+ +...++.++.+..+.++.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiar--------------Yc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~ 75 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIAR--------------YCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDA 75 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHH--------------HcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccc
Confidence 466778899999999999999886 78888998887 88877653 445788888888888887
Q ss_pred HHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH-HcCccc
Q 011249 165 KAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMR-QENVRI 243 (490)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p 243 (490)
+.+. +|.+.+|..|..+|...||+.. |+...+ -...+...+...|.-.....++..+. ..+..|
T Consensus 76 Enpk-------ep~aDtyt~Ll~ayr~hGDli~----fe~veq----dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lp 140 (1088)
T KOG4318|consen 76 ENPK-------EPLADTYTNLLKAYRIHGDLIL----FEVVEQ----DLESINQSFSDHGVGSPERWFLMKIHCCPHSLP 140 (1088)
T ss_pred cCCC-------CCchhHHHHHHHHHHhccchHH----HHHHHH----HHHHHHhhhhhhccCcHHHHHHhhcccCcccch
Confidence 7765 7788899999999999988655 222211 12233334444444444444443322 122233
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhcCC-CCchhHHHHHHHHHH-hcCChHHHHHHHhcccC-CChhHHHHHHHH
Q 011249 244 SEVAMVGAISACTQLGDVEMAAILAKHVDEGCC-DRTNYVSNALIHMHS-KCGYLDLAWREFSRIKN-KDVISYSSMITA 320 (490)
Q Consensus 244 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~ 320 (490)
|..+. +......|-++.+.+++..+..... .|..+ +++-+. ....+++-....+...+ +++.+|...+.+
T Consensus 141 da~n~---illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~ 213 (1088)
T KOG4318|consen 141 DAENA---ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKR 213 (1088)
T ss_pred hHHHH---HHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHH
Confidence 33221 1122233444444444433321110 11111 111111 11223333333333333 677777777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcC
Q 011249 321 FADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSG 396 (490)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 396 (490)
-...|+.+.|..++.+|.+.|++.+..-|..|+-+ .++...+..+++-|... |+.|+.+|+...+..+...|
T Consensus 214 alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 214 ALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcch
Confidence 77777777777777777777777776666666544 56666666666666664 77777777766555555533
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.32 E-value=1.4e-10 Score=93.59 Aligned_cols=190 Identities=12% Similarity=0.023 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcccCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHhcC
Q 011249 283 SNALIHMHSKCGYLDLAWREFSRIKNK---DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPN-QVTFIGVLTACSH 358 (490)
Q Consensus 283 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 358 (490)
...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+-|++... +.|+ ....|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHh
Confidence 334455556666666666666655542 233555555556666666666666665555 2332 2345555555555
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHH
Q 011249 359 GGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIA 436 (490)
Q Consensus 359 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 436 (490)
.|++++|...|++....-.......+|..+.-+..+.|+++.|.+.|++.. .+..+.+...+.......|++-.|..+
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 556666666666555532222234455555555555666666666555444 233344555555555555666666666
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHh
Q 011249 437 ARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMI 474 (490)
Q Consensus 437 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (490)
+++.....+-....+...+++-.+.|+.+.+-++=..+
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 65555555544555555555555555555555544433
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.30 E-value=3.2e-09 Score=100.61 Aligned_cols=285 Identities=14% Similarity=0.057 Sum_probs=160.6
Q ss_pred HHHHhcCChhHHHHHHhhcCC--CC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHh-c-----
Q 011249 187 AGYGKCGEVREAKKVFDEISE--PD-ASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACT-Q----- 257 (490)
Q Consensus 187 ~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~----- 257 (490)
..+...|++++|++.++.... .| ..........+.+.|+.++|..+|..+++.+ |+...|...+..+. -
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 344555666666666655443 23 3334455566666666666666666666653 34433333333332 1
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChH-HHHHHHhcccCCC-hhHHHHHHHHHHhcCChHHHHHHHH
Q 011249 258 LGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLD-LAWREFSRIKNKD-VISYSSMITAFADHGKSQEALDMFL 335 (490)
Q Consensus 258 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 335 (490)
..+.+....+|+.+...- |.......+.-.+.....+. .+...+.....++ +.+|+.+-..|....+.+-...++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 123455555666554443 11111111111111111111 1222223333332 2445555555554444444444444
Q ss_pred HHHHc----C----------CCCcH--HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChH
Q 011249 336 KMRNE----G----------IEPNQ--VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLE 399 (490)
Q Consensus 336 ~~~~~----~----------~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 399 (490)
..... + -.|+. .++..+...|...|++++|++++++..+ ..|..+..|..-++.|-+.|+++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHH
Confidence 44321 1 12333 2445566778888899999999988887 33444778888888888999999
Q ss_pred HHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcC--CCC-------CchHHHHHHHHHhcCCcchHH
Q 011249 400 KAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELG--PEK-------TGNSALLANIYASMGKWKDSE 468 (490)
Q Consensus 400 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~A~ 468 (490)
+|.+.++... +.-|..+-+-.+..+.+.|++++|.+++....+.+ |.. ..+....+.+|.+.|++..|+
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9988888777 34455555566677788899999988888876644 221 123355688888999999988
Q ss_pred HHHHHhhhc
Q 011249 469 IVKMMISET 477 (490)
Q Consensus 469 ~~~~~~~~~ 477 (490)
+.|..+.+.
T Consensus 326 k~~~~v~k~ 334 (517)
T PF12569_consen 326 KRFHAVLKH 334 (517)
T ss_pred HHHHHHHHH
Confidence 888766543
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=3.3e-09 Score=99.30 Aligned_cols=231 Identities=15% Similarity=0.098 Sum_probs=169.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-cccChhh-HHHHHHHHhccCChHHHHHHHHHHHhc-----C-CCC
Q 011249 212 CWAAMTVCYVQNGYAKAAIEMYKVMRQE-----N-VRISEVA-MVGAISACTQLGDVEMAAILAKHVDEG-----C-CDR 278 (490)
Q Consensus 212 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~ 278 (490)
+...+...|...|+++.|+.+++...+. | ..|...+ ...+...|...+++++|..+|+.+... | ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4555888888889999988888887653 2 1334333 334777788889999999988887543 2 111
Q ss_pred -chhHHHHHHHHHHhcCChHHHHHHHhcccC----------CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCC
Q 011249 279 -TNYVSNALIHMHSKCGYLDLAWREFSRIKN----------KDV-ISYSSMITAFADHGKSQEALDMFLKMRNE---GIE 343 (490)
Q Consensus 279 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 343 (490)
-..+++.|..+|.+.|++++|...++...+ +.+ ..++.++..+...+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 234566677788999999888877776543 122 24566777888999999999999987652 122
Q ss_pred CcH----HHHHHHHHHhcCCCChHHHHHHHHHHHHHc----C--CCCCchHHHHHHHHHhhcCChHHHHHHHHhcc----
Q 011249 344 PNQ----VTFIGVLTACSHGGLVEDGCKQFELMTRVF----G--IKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK---- 409 (490)
Q Consensus 344 p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 409 (490)
++. .+++.+...|...|++++|.++++++.... + ..-....++.|...|.+.+++++|.++|.+..
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 332 488999999999999999999999988752 1 11124456788899999999999999987654
Q ss_pred ----CCCC-hhhHHHHHHHHhhhCChHHHHHHHHHHHh
Q 011249 410 ----DFCD-AGTWGALLGACKVHVNAELGEIAARHLLE 442 (490)
Q Consensus 410 ----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (490)
..|+ ..+|..|+.+|...|+++.|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2333 35889999999999999999999998874
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.29 E-value=1.6e-09 Score=102.57 Aligned_cols=258 Identities=10% Similarity=0.013 Sum_probs=188.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCcccCh-hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc-
Q 011249 216 MTVCYVQNGYAKAAIEMYKVMRQENVRISE-VAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKC- 293 (490)
Q Consensus 216 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 293 (490)
....+...|++++|++.++.-.+. .+|. .........+.+.|+.++|..+|..+.+.+ |.+...|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 345678899999999999886554 4454 556667778899999999999999999998 66677777777766332
Q ss_pred ----CChHHHHHHHhcccC--CChhHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHH
Q 011249 294 ----GYLDLAWREFSRIKN--KDVISYSSMITAFADHGKS-QEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGC 366 (490)
Q Consensus 294 ----~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 366 (490)
...+...++|+++.. |.......+.-.+..-..+ ..+..++..+...|++ .+|..+-..|......+-..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 246777888887765 3222222222222221223 3455677777788765 34555555566555555555
Q ss_pred HHHHHHHHHc-------------CCCCCch--HHHHHHHHHhhcCChHHHHHHHHhcc-CCCC-hhhHHHHHHHHhhhCC
Q 011249 367 KQFELMTRVF-------------GIKPLTE--HLTCMVDLLGRSGQLEKAHSLIMDYK-DFCD-AGTWGALLGACKVHVN 429 (490)
Q Consensus 367 ~~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~ 429 (490)
+++....... .-+|+.. ++..+...|-..|++++|++++++.. ..|+ +..|..-+..+.+.|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 6666654421 1123332 34567888999999999999999776 4454 6788888999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 430 AELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 430 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
+++|.+.++.+.++++.|..+-+-.+..+.++|+.++|.+++......+.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999999999998877765
No 77
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.1e-11 Score=77.70 Aligned_cols=50 Identities=16% Similarity=0.426 Sum_probs=47.2
Q ss_pred CCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcC
Q 011249 65 CKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACAR 115 (490)
Q Consensus 65 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 115 (490)
||. .+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~-~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDV-VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred Cch-HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 677 89999999999999999999999999999999999999999998753
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.27 E-value=2e-07 Score=86.68 Aligned_cols=418 Identities=11% Similarity=0.054 Sum_probs=251.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHhccCCC--CCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhc
Q 011249 37 YAQFLIRLLQLPGDNLSYARQVFDQIPK--CKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACA 114 (490)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 114 (490)
+.....-.+...|+ .++|....+.-.+ +...+.|..+.-.+-...++++|++.|...... .||....-.=+.
T Consensus 43 slAmkGL~L~~lg~-~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDls--- 116 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGK-KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLS--- 116 (700)
T ss_pred hHHhccchhhcccc-hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHH---
Confidence 33444445566677 7888888776543 223267888888888888999999999998775 555432211111
Q ss_pred CCCChHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHhcc-----CCchhHHH--
Q 011249 115 RVPSLLEAVICGYTKIGLMDDAQRLFDSMAE--R-NVISWSAMVAGYANCGNMKAAKEFYDRMTE-----KNSVTWVA-- 184 (490)
Q Consensus 115 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~-- 184 (490)
-.-.+.|+++.....-....+ | ....|..+..++.-.|++..|..++++..+ ++...+..
T Consensus 117 ----------lLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se 186 (700)
T KOG1156|consen 117 ----------LLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSE 186 (700)
T ss_pred ----------HHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHH
Confidence 123566777777766666655 3 445788888888889999999998888764 34443322
Q ss_pred ----HHHHHHhcCChhHHHHHHhhcCC--CC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHh-
Q 011249 185 ----MIAGYGKCGEVREAKKVFDEISE--PD-ASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACT- 256 (490)
Q Consensus 185 ----l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~- 256 (490)
-.....+.|..++|.+.+..... .| ...-..-...+.+.++.++|..+|..+... .||...|...+..+.
T Consensus 187 ~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 187 LLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALG 264 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHH
Confidence 22345677888888888877665 22 233345567788899999999999999876 566666655554433
Q ss_pred ccCChHHHH-HHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCC-ChhHHHHHHHHHHhcCChHHHHHHH
Q 011249 257 QLGDVEMAA-ILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNK-DVISYSSMITAFADHGKSQEALDMF 334 (490)
Q Consensus 257 ~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 334 (490)
+..+--++. .+|....+.-....... ..=+.......-.+..-.++....+. -+.++..+...|-.....+-..++.
T Consensus 265 k~~d~~~~lk~ly~~ls~~y~r~e~p~-Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lv 343 (700)
T KOG1156|consen 265 KIKDMLEALKALYAILSEKYPRHECPR-RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLV 343 (700)
T ss_pred HHhhhHHHHHHHHHHHhhcCcccccch-hccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHH
Confidence 333333333 55555544321111100 00011111111112222333333332 2344555555444332222222222
Q ss_pred HHHHH----cC----------CCCcHH--HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCCh
Q 011249 335 LKMRN----EG----------IEPNQV--TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQL 398 (490)
Q Consensus 335 ~~~~~----~~----------~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 398 (490)
..+.. .| -+|... ++-.++..+-..|+++.|..+++.... ..|.-++.|..-.+.+...|++
T Consensus 344 t~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l 421 (700)
T KOG1156|consen 344 TSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLL 421 (700)
T ss_pred HHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCCh
Confidence 22221 11 134443 555667778899999999999998875 3333366676777889999999
Q ss_pred HHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCC---------chHHHHHHHHHhcCCcchH
Q 011249 399 EKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKT---------GNSALLANIYASMGKWKDS 467 (490)
Q Consensus 399 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~~A 467 (490)
++|..++++.. +.+|...-.--+.-..+.++.++|.++..+..+.+-+-. .+...=+.+|.+.|++..|
T Consensus 422 ~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~A 501 (700)
T KOG1156|consen 422 DEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLA 501 (700)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHH
Confidence 99999998877 445554444555666788899999998888776542111 1222236678888888777
Q ss_pred HHHHHHhh
Q 011249 468 EIVKMMIS 475 (490)
Q Consensus 468 ~~~~~~~~ 475 (490)
++=+..+.
T Consensus 502 LKkfh~i~ 509 (700)
T KOG1156|consen 502 LKKFHEIE 509 (700)
T ss_pred HHHHhhHH
Confidence 76655443
No 79
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=1.2e-07 Score=81.63 Aligned_cols=193 Identities=15% Similarity=0.083 Sum_probs=124.7
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHH-----HHHHHHhcCChHHHHHHHhcccC-----CChhHHHHHH
Q 011249 249 VGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNA-----LIHMHSKCGYLDLAWREFSRIKN-----KDVISYSSMI 318 (490)
Q Consensus 249 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~ 318 (490)
..++-.|.+.++..+|..+.+++.-. .|-...... +..-......+.-|.+.|.-+-+ ..+.-..++.
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 34455577888888888877665321 122222222 22222222345566677765544 2333456677
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHH-HHHHHHHhhcCC
Q 011249 319 TAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHL-TCMVDLLGRSGQ 397 (490)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~ 397 (490)
+.+.-..++++++-.+.....- +.-|...-..+.++++..|++.+|+++|-.+... .++ +..+| ..|.++|.+.++
T Consensus 367 s~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCC
Confidence 7777777888888888777664 3334444445778888889999999998877642 233 33444 467788999999
Q ss_pred hHHHHHHHHhccCCCChhhHH-HHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 398 LEKAHSLIMDYKDFCDAGTWG-ALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 398 ~~~A~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
++-|++++-++..+.+..+.. .+.+.|.+.+.+--|-+.|+.+...+|.
T Consensus 444 P~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 444 PQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred chHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 999999988877444444443 3446788899998888888888888876
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=4.1e-09 Score=85.32 Aligned_cols=195 Identities=14% Similarity=0.046 Sum_probs=95.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCCh
Q 011249 251 AISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKS 327 (490)
Q Consensus 251 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 327 (490)
|.-.|...|+...|..-+++.++.. |.+..++..+...|.+.|+.+.|.+.|++..+ .+..+.|....-+|..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 3334444455555555555444443 33444444444555555555555555544433 2334444444445555555
Q ss_pred HHHHHHHHHHHHcCCCCc-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHH
Q 011249 328 QEALDMFLKMRNEGIEPN-QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIM 406 (490)
Q Consensus 328 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 406 (490)
++|...|++....-.-|. ..+|..+.-+..+.|+.+.|...|++..+ ..+..+.....+.......|++-.|..+++
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555554221121 23455555555555555555555555554 223334444455555555555555555555
Q ss_pred hcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCC
Q 011249 407 DYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKT 448 (490)
Q Consensus 407 ~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 448 (490)
... ..++..+..-.|..-...||.+.+-+.=.++.+..|.++
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 443 223444444444445555666655555555555555544
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.26 E-value=8.6e-10 Score=97.33 Aligned_cols=251 Identities=13% Similarity=0.027 Sum_probs=158.5
Q ss_pred HHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHH
Q 011249 188 GYGKCGEVREAKKVFDEISE---PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMA 264 (490)
Q Consensus 188 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 264 (490)
-+.-.|++..++.-.+.-.. .+......+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 10 n~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 34456777777754441111 22334556677888888877544 3333332 56666665565555544455555
Q ss_pred HHHHHHHHhcCCC-CchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011249 265 AILAKHVDEGCCD-RTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIE 343 (490)
Q Consensus 265 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 343 (490)
..-++........ .+..+......++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4444443333322 23334444455677788999998888776 46677777888899999999999999998863 3
Q ss_pred CcHHHHHHHHHHh----cCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhH
Q 011249 344 PNQVTFIGVLTAC----SHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTW 417 (490)
Q Consensus 344 p~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 417 (490)
.|. +...+..++ ...+.+.+|..+|+++.. ..++++.+.+.++.+....|++++|.+++.+.. .+.++.+.
T Consensus 162 eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 343 333444443 234468899999999876 566778888888888889999999998887765 34456677
Q ss_pred HHHHHHHhhhCCh-HHHHHHHHHHHhcCCCCCc
Q 011249 418 GALLGACKVHVNA-ELGEIAARHLLELGPEKTG 449 (490)
Q Consensus 418 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~p~~~~ 449 (490)
..++......|+. +.+.+.+.++....|+++.
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 7777777777777 6778888888888888553
No 82
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.2e-09 Score=98.84 Aligned_cols=338 Identities=14% Similarity=0.053 Sum_probs=177.8
Q ss_pred HHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHhccCC---chhHHHHHHHHHhcCChhHHHH
Q 011249 127 YTKIGLMDDAQRLFDSMAE---RNVISWSAMVAGYANCGNMKAAKEFYDRMTEKN---SVTWVAMIAGYGKCGEVREAKK 200 (490)
Q Consensus 127 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~ 200 (490)
....|+++.|+..|-+... +|...|..-..+|...|++++|++--.+-.+-+ +..|.....++.-.|++++|+.
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 4567899999999987764 466778888888899999988888777776543 3478888888888889999988
Q ss_pred HHhhcCC---CCHHhHHHHHHHHHhcC-----------------C-------------------------------hHHH
Q 011249 201 VFDEISE---PDASCWAAMTVCYVQNG-----------------Y-------------------------------AKAA 229 (490)
Q Consensus 201 ~~~~~~~---~~~~~~~~l~~~~~~~g-----------------~-------------------------------~~~A 229 (490)
.|.+-.+ .+...+..+..++.... + .+..
T Consensus 92 ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 92 AYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHH
Confidence 8887654 33444555555441110 0 0000
Q ss_pred HHHHHHHHH--------cC-------ccc---------C-------------hhhHHHHHHHHhccCChHHHHHHHHHHH
Q 011249 230 IEMYKVMRQ--------EN-------VRI---------S-------------EVAMVGAISACTQLGDVEMAAILAKHVD 272 (490)
Q Consensus 230 ~~~~~~~~~--------~~-------~~p---------~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 272 (490)
++..-.+.. .+ ..| . ..-...+.++..+..+++.+.+.+....
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~ 251 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL 251 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 000000000 00 000 0 0011123333333344444444444444
Q ss_pred hcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCCh---h-------HHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011249 273 EGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDV---I-------SYSSMITAFADHGKSQEALDMFLKMRNEGI 342 (490)
Q Consensus 273 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 342 (490)
+.. .+...++....+|...|.+..+....++..+... . .+..+..+|.+.++++.+...|++......
T Consensus 252 el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R 329 (539)
T KOG0548|consen 252 ELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR 329 (539)
T ss_pred hHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc
Confidence 432 3333334444444444444444444333332111 0 111122233344445555555554443222
Q ss_pred CCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCc-hHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHH
Q 011249 343 EPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLT-EHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGA 419 (490)
Q Consensus 343 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 419 (490)
.|+... +....+++....+... -+.|.. .-...-...+.+.|++..|++.|.++. .+.|...|..
T Consensus 330 t~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsN 397 (539)
T KOG0548|consen 330 TPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSN 397 (539)
T ss_pred CHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHH
Confidence 222111 0111111111111111 111111 001112345566777777777777665 4445667777
Q ss_pred HHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcc
Q 011249 420 LLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 478 (490)
-.-+|.+.|.+..|+.-.+..++++|+.+..|..-+.++....+|++|.+.|++..+.+
T Consensus 398 RAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 398 RAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777777777777777777777666554
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=2.1e-08 Score=86.26 Aligned_cols=412 Identities=10% Similarity=0.027 Sum_probs=239.6
Q ss_pred HhcCCCCHHHHHHHhccCCCCC--CceehH-HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHH
Q 011249 45 LQLPGDNLSYARQVFDQIPKCK--TQFLWT-SLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLE 121 (490)
Q Consensus 45 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 121 (490)
+..+.+ +..|+.+++.-...+ .+...+ .+..++.+.|++++|...|+.+....- |+......+ .+
T Consensus 32 fls~rD-ytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~-~~~el~vnL-Ac--------- 99 (557)
T KOG3785|consen 32 FLSNRD-YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD-APAELGVNL-AC--------- 99 (557)
T ss_pred HHhccc-chhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC-CCcccchhH-HH---------
Confidence 334445 778888877554221 112333 344566788999999999998877543 333333222 22
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHH
Q 011249 122 AVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKV 201 (490)
Q Consensus 122 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 201 (490)
.+.-.|.+.+|.++-++..+ ++..-..++...-+.|+-++-..+-+.+... ..--.+|.......-.+++|+++
T Consensus 100 ----c~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 100 ----CKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred ----HHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHH
Confidence 24556888999888776643 2222334445555666666665555555433 23334555555555678889999
Q ss_pred HhhcCC--CCHHhHHH-HHHHHHhcCChHHHHHHHHHHHHcCcccCh-hhHHHHHHHHhcc--CChHHHH--H-------
Q 011249 202 FDEISE--PDASCWAA-MTVCYVQNGYAKAAIEMYKVMRQENVRISE-VAMVGAISACTQL--GDVEMAA--I------- 266 (490)
Q Consensus 202 ~~~~~~--~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~--g~~~~a~--~------- 266 (490)
+.++.. |+....|. +.-+|.+..-++-+.++++-..+. .||+ ...+..+....+. |+..+.+ .
T Consensus 174 YkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~ 251 (557)
T KOG3785|consen 174 YKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ 251 (557)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc
Confidence 988776 44444443 344666777777777777776654 3343 2333322222221 2211110 0
Q ss_pred ---HHHHHHhcCC------------CC-----chhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCC
Q 011249 267 ---LAKHVDEGCC------------DR-----TNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGK 326 (490)
Q Consensus 267 ---~~~~~~~~~~------------~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (490)
..+.+.+.+. -| -+..-..|+--|.+.+++.+|..+.+++...++.-|-.-.-.+...|+
T Consensus 252 ~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 252 EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQ 331 (557)
T ss_pred cchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhh
Confidence 1111111110 00 111223355567889999999999988877555544433333444442
Q ss_pred -------hHHHHHHHHHHHHcCCCCcHH-HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCCh
Q 011249 327 -------SQEALDMFLKMRNEGIEPNQV-TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQL 398 (490)
Q Consensus 327 -------~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 398 (490)
..-|.+.|+-.-+.+..-|.. ---++..++.-..++++.+.++..+.. +-...|...+ .+..+++..|.+
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny 409 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNY 409 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcCh
Confidence 344555555443444333332 112233444455678888888888877 3444444443 578999999999
Q ss_pred HHHHHHHHhccCC--CChhhHHHHH-HHHhhhCChHHHHHHHHHHHhcC-CC-CCchHHHHHHHHHhcCCcchHHHHHHH
Q 011249 399 EKAHSLIMDYKDF--CDAGTWGALL-GACKVHVNAELGEIAARHLLELG-PE-KTGNSALLANIYASMGKWKDSEIVKMM 473 (490)
Q Consensus 399 ~~A~~~~~~~~~~--~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (490)
.+|.++|-.+..+ .+..+|.+++ ..|.+.+.++.|..++- +.+ |. ....+..+++.|.+++++--|-+.|+.
T Consensus 410 ~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~ 486 (557)
T KOG3785|consen 410 VEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDE 486 (557)
T ss_pred HHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999888722 3556666554 56688888888866554 433 33 344556678889999999888888887
Q ss_pred hhhccccc
Q 011249 474 ISETEKKK 481 (490)
Q Consensus 474 ~~~~~~~~ 481 (490)
+...++.+
T Consensus 487 lE~lDP~p 494 (557)
T KOG3785|consen 487 LEILDPTP 494 (557)
T ss_pred HHccCCCc
Confidence 77655433
No 84
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=2.9e-11 Score=75.82 Aligned_cols=50 Identities=30% Similarity=0.657 Sum_probs=46.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcC
Q 011249 309 KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSH 358 (490)
Q Consensus 309 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 358 (490)
||+.+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998874
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=5.1e-08 Score=88.65 Aligned_cols=403 Identities=12% Similarity=0.025 Sum_probs=259.5
Q ss_pred HHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHh-hHHHHHHHhcCCCC
Q 011249 42 IRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGF-TFSSVLNACARVPS 118 (490)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~ 118 (490)
.++-...|+ +++|...|-... .|.+...|+.-..+|+..|++++|++=-.+-++. .|+-. .|+..
T Consensus 9 gnaa~s~~d-~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~--------- 76 (539)
T KOG0548|consen 9 GNAAFSSGD-FETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRK--------- 76 (539)
T ss_pred HHhhccccc-HHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHh---------
Confidence 345667888 999999998764 5555477999999999999999998877776665 44422 23222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHhHHHHHHHHHHhCC---ChHHHHHHHHHhcc-C------CchhHHHH
Q 011249 119 LLEAVICGYTKIGLMDDAQRLFDSMAE--R-NVISWSAMVAGYANCG---NMKAAKEFYDRMTE-K------NSVTWVAM 185 (490)
Q Consensus 119 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~-~------~~~~~~~l 185 (490)
..++.-.|++++|+..|.+-++ | |...++.+..++.... +.-.--.++..... | ....|..+
T Consensus 77 -----Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~ 151 (539)
T KOG0548|consen 77 -----GAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKI 151 (539)
T ss_pred -----HHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHH
Confidence 2235667999999999999886 3 4566777777662110 00000011111110 0 11122222
Q ss_pred HHHHHh----------cCChhHHHHHHhhcC----------------CC----------------------CHHhHHHHH
Q 011249 186 IAGYGK----------CGEVREAKKVFDEIS----------------EP----------------------DASCWAAMT 217 (490)
Q Consensus 186 ~~~~~~----------~~~~~~A~~~~~~~~----------------~~----------------------~~~~~~~l~ 217 (490)
+..+-+ ..++..|.-.+.... .| -..-...+.
T Consensus 152 l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lg 231 (539)
T KOG0548|consen 152 LEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELG 231 (539)
T ss_pred HHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHH
Confidence 222111 011111211111110 01 012345577
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHH-------HHHHHH
Q 011249 218 VCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSN-------ALIHMH 290 (490)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~ 290 (490)
+..-+..+++.|++.+....... -+..-++....++...|.+......-....+.|... ..-|+ .+..+|
T Consensus 232 naaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 232 NAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHHHhhhhh
Confidence 77888889999999999988765 355666677778899998888887777766665221 12222 244467
Q ss_pred HhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHhcCCCChHHHHHHH
Q 011249 291 SKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQV-TFIGVLTACSHGGLVEDGCKQF 369 (490)
Q Consensus 291 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~ 369 (490)
.+.++++.|+..|.+...+... -+...+....+++.+..+...- +.|... ....-...+.+.|++..|...|
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 7788899999999886542111 1122333445566655555443 344432 2233366688999999999999
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC
Q 011249 370 ELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEK 447 (490)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 447 (490)
.++++ ..|.|...|....-+|.+.|.+..|++-.+... .++....|..-..++....++++|.+.|+++++.+|++
T Consensus 382 teAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 382 TEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred HHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 99998 457788999999999999999999999877665 34455677777777788889999999999999999999
Q ss_pred CchHHHHHHHHHhcCCcchHHHHHHH
Q 011249 448 TGNSALLANIYASMGKWKDSEIVKMM 473 (490)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (490)
..+...+.++.........-.++.++
T Consensus 460 ~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 460 AEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 99888888877764444444444443
No 86
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.24 E-value=7.1e-08 Score=89.59 Aligned_cols=384 Identities=12% Similarity=0.077 Sum_probs=246.9
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCC---
Q 011249 71 WTSLIRNHVLHAHFRQSILLYAKMHRL-GVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAER--- 146 (490)
Q Consensus 71 ~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 146 (490)
|...+..| ..+++...++..+.+.+. +-.+++... . .-.+...|+-++|..........
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAm----k------------GL~L~~lg~~~ea~~~vr~glr~d~~ 73 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAM----K------------GLTLNCLGKKEEAYELVRLGLRNDLK 73 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHh----c------------cchhhcccchHHHHHHHHHHhccCcc
Confidence 44444444 445666666666665552 111222221 1 11355678999999988888774
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHhccC---CchhHHHHHHHHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHH
Q 011249 147 NVISWSAMVAGYANCGNMKAAKEFYDRMTEK---NSVTWVAMIAGYGKCGEVREAKKVFDEISE---PDASCWAAMTVCY 220 (490)
Q Consensus 147 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 220 (490)
+.+.|+.+.-.+....++++|++.|+....- |...+.-+.-.-++.++++.....-....+ .....|..++.++
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQ 153 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5578999998888899999999999998853 666777777777778888887777766655 3445688888888
Q ss_pred HhcCChHHHHHHHHHHHHcC-cccChhhHHHHH------HHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc
Q 011249 221 VQNGYAKAAIEMYKVMRQEN-VRISEVAMVGAI------SACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKC 293 (490)
Q Consensus 221 ~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 293 (490)
.-.|+...|..++++..+.. -.|+...+.... ......|..+.|.+.+......- ......-..-...+.+.
T Consensus 154 ~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl 232 (700)
T KOG1156|consen 154 HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKL 232 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHH
Confidence 88999999999999888654 245555444332 23456677777777666554332 22223334456677888
Q ss_pred CChHHHHHHHhcccC--CChhHHHHHHH-HHHhcCChHHHH-HHHHH---------------------------------
Q 011249 294 GYLDLAWREFSRIKN--KDVISYSSMIT-AFADHGKSQEAL-DMFLK--------------------------------- 336 (490)
Q Consensus 294 ~~~~~A~~~~~~~~~--~~~~~~~~l~~-~~~~~~~~~~a~-~~~~~--------------------------------- 336 (490)
+++++|..++..+.. ||...|..... ++.+-.+.-++. .+|..
T Consensus 233 ~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~ 312 (700)
T KOG1156|consen 233 GQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLR 312 (700)
T ss_pred hhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHH
Confidence 899999999888876 44444433332 332222222222 33333
Q ss_pred -HHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc-----C------------CCCCchHH--HHHHHHHhhcC
Q 011249 337 -MRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVF-----G------------IKPLTEHL--TCMVDLLGRSG 396 (490)
Q Consensus 337 -~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~------------~~~~~~~~--~~l~~~~~~~g 396 (490)
+.+.|+++- +..+...|-. +... .++++....+ + -+|.+..| ..++..+-+.|
T Consensus 313 ~~l~Kg~p~v---f~dl~SLyk~---p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g 385 (700)
T KOG1156|consen 313 PLLSKGVPSV---FKDLRSLYKD---PEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLG 385 (700)
T ss_pred HHhhcCCCch---hhhhHHHHhc---hhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcc
Confidence 333333321 1122221211 1111 1333332211 1 14444444 35778888999
Q ss_pred ChHHHHHHHHhcc-CCCCh-hhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHh
Q 011249 397 QLEKAHSLIMDYK-DFCDA-GTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMI 474 (490)
Q Consensus 397 ~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (490)
+++.|..+++... ..|+. ..|..-.+.+...|+.++|...++++.+++-.|..+-..-+.-..++++.++|.++..+.
T Consensus 386 ~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 386 DYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred cHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 9999999998877 34543 466666688889999999999999999999666766667888899999999999999988
Q ss_pred hhccc
Q 011249 475 SETEK 479 (490)
Q Consensus 475 ~~~~~ 479 (490)
.+.|.
T Consensus 466 Tr~~~ 470 (700)
T KOG1156|consen 466 TREGF 470 (700)
T ss_pred hhccc
Confidence 87764
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.24 E-value=9.7e-09 Score=87.88 Aligned_cols=298 Identities=13% Similarity=0.073 Sum_probs=201.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHH---HHHHhcCChhHHHHHHhhcCCCCHHhHHH---HHHHHHhcC
Q 011249 151 WSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMI---AGYGKCGEVREAKKVFDEISEPDASCWAA---MTVCYVQNG 224 (490)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~g 224 (490)
.--+...+...|++..|+.-|....+-|+..|.++. ..|...|+-..|+.-|.+..+..+..+.+ -...+.+.|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 334566667777777777777777766666665543 45666676666666666665422222222 234566777
Q ss_pred ChHHHHHHHHHHHHcCcccC------------h--hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 011249 225 YAKAAIEMYKVMRQENVRIS------------E--VAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMH 290 (490)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~p~------------~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 290 (490)
.+++|..-|+...+....-. . ......+..+...|+...|+....++++.. +-+...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 77777777777765432100 0 112233445567789999999999998876 67888888888999
Q ss_pred HhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH----HHHHH---H------H
Q 011249 291 SKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQV----TFIGV---L------T 354 (490)
Q Consensus 291 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l---~------~ 354 (490)
...|++..|+.-++...+ .+...+--+-..+...|+.+.++...++..+ +.||.. .|..+ . .
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999877765544 6777777788888889999999998888887 577653 12111 1 1
Q ss_pred HhcCCCChHHHHHHHHHHHHHcCCCCC-----chHHHHHHHHHhhcCChHHHHHHHHhcc-CCC-ChhhHHHHHHHHhhh
Q 011249 355 ACSHGGLVEDGCKQFELMTRVFGIKPL-----TEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFC-DAGTWGALLGACKVH 427 (490)
Q Consensus 355 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 427 (490)
.....++|.++++..+...+. .|. ...+..+-.++...|++.+|++...++. ..| |..++.--..+|.-.
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 234567777777777777663 232 2234455667778888888888887766 334 466777777888888
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHH
Q 011249 428 VNAELGEIAARHLLELGPEKTGNSALL 454 (490)
Q Consensus 428 g~~~~a~~~~~~~~~~~p~~~~~~~~l 454 (490)
.+++.|+.-|+++.+.+|++..+-..+
T Consensus 355 E~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 888888888888888888877655544
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=5.5e-08 Score=81.77 Aligned_cols=401 Identities=11% Similarity=0.028 Sum_probs=196.5
Q ss_pred HHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCCh
Q 011249 42 IRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSL 119 (490)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 119 (490)
+..+.+..+ +.+|++++..-. .|......+.|..+|-...++..|...|+++... .|...-|..--.
T Consensus 17 iy~lI~d~r-y~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A-------- 85 (459)
T KOG4340|consen 17 VYRLIRDAR-YADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQA-------- 85 (459)
T ss_pred HHHHHHHhh-HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHH--------
Confidence 333344455 556665554432 2222234555555555566666666666665554 333333321111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC-CCHhHHHHHH--HHHHhCCChHHHHHHHHHhc-cCCchhHHHHHHHHHhcCCh
Q 011249 120 LEAVICGYTKIGLMDDAQRLFDSMAE-RNVISWSAMV--AGYANCGNMKAAKEFYDRMT-EKNSVTWVAMIAGYGKCGEV 195 (490)
Q Consensus 120 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 195 (490)
..+.+.+.+.+|+++...|.. ++...-..-+ ......+++..+..++++.. +.+..+.+...-...+.|++
T Consensus 86 -----QSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 86 -----QSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY 160 (459)
T ss_pred -----HHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH
Confidence 123444555556655555544 2221111111 12233455555555555554 23444444444444555555
Q ss_pred hHHHHHHhhcCC----CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhh----HHHHHHHHhccCChHHHHHH
Q 011249 196 REAKKVFDEISE----PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVA----MVGAISACTQLGDVEMAAIL 267 (490)
Q Consensus 196 ~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~g~~~~a~~~ 267 (490)
+.|.+-|+...+ .....|+. .-+..+.|+++.|+++..++++.|++-.+.. -+-.+.+ ...|+ ...+
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgN---t~~l 235 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGN---TLVL 235 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccc---hHHH
Confidence 555555555443 22233332 2233344555555555555555554321110 0000000 00000 0000
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011249 268 AKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN-----KDVISYSSMITAFADHGKSQEALDMFLKMRNEGI 342 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 342 (490)
... .-+..+|.-...+.+.|+++.|.+.+-+|+. -|++|...+.-.-. .+++-...+-++-+...+.
T Consensus 236 h~S-------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 236 HQS-------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred HHH-------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC
Confidence 000 0011233334456788999999999999986 37777766654322 3455555555665665422
Q ss_pred CCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCC-CCchHHHHHHHHHh-hcCChHHHHHHHHhccCCCChhhHHHH
Q 011249 343 EPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIK-PLTEHLTCMVDLLG-RSGQLEKAHSLIMDYKDFCDAGTWGAL 420 (490)
Q Consensus 343 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l 420 (490)
....||..++-.|++..-++.|-.++.+-... ... .+...|+ +++++. ..-..++|.+-++.+........-..-
T Consensus 308 -fP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklA 384 (459)
T KOG4340|consen 308 -FPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLA 384 (459)
T ss_pred -CChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999998888888777554321 111 1223333 444443 345677777766555411111111111
Q ss_pred HHHH-hhhCC----hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 421 LGAC-KVHVN----AELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 421 ~~~~-~~~g~----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
+..- .+..+ ...+++-+++.+++. ..+...-++.|++..++..+++.|..-.+-
T Consensus 385 i~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 385 IQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 1111 11111 223444455555544 123667788999999999999999876553
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1.3e-07 Score=87.01 Aligned_cols=380 Identities=10% Similarity=0.031 Sum_probs=224.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCC--CHhHHHH
Q 011249 76 RNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAER--NVISWSA 153 (490)
Q Consensus 76 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 153 (490)
+-+..+|++++|.+...++...+..+....+.-++. ..+.+++++|+.+.+.-... +...+--
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvVa---------------lIq~~ky~~ALk~ikk~~~~~~~~~~~fE 84 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVA---------------LIQLDKYEDALKLIKKNGALLVINSFFFE 84 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhh---------------hhhhhHHHHHHHHHHhcchhhhcchhhHH
Confidence 445567899999999999988752222223333332 57789999999776654431 1111122
Q ss_pred HHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 011249 154 MVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMY 233 (490)
Q Consensus 154 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 233 (490)
-.-+..+.+..++|+..++-..+.+..+...-...+.+.|++++|.++|+.+.+.+...+...+.+-+..--. +...
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--~l~~- 161 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--ALQV- 161 (652)
T ss_pred HHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--hhhH-
Confidence 3445567899999999999655556667777788899999999999999999775554444443332211100 1111
Q ss_pred HHHHHcCcccChhhHHHHH---HHHhccCChHHHHHHHHHHHhcCC-------CCch-------hHHHHHHHHHHhcCCh
Q 011249 234 KVMRQENVRISEVAMVGAI---SACTQLGDVEMAAILAKHVDEGCC-------DRTN-------YVSNALIHMHSKCGYL 296 (490)
Q Consensus 234 ~~~~~~~~~p~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~-------~~~~~l~~~~~~~~~~ 296 (490)
+.+......| ..+|..+. ..+...|++.+|+++++...+.+. ..+. ..-.-+..++...|+.
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 1122222233 33444443 356678999999999998833221 1111 1223455677788999
Q ss_pred HHHHHHHhcccC---CChh----HHHHHHHHHHh---------------------------------------------c
Q 011249 297 DLAWREFSRIKN---KDVI----SYSSMITAFAD---------------------------------------------H 324 (490)
Q Consensus 297 ~~A~~~~~~~~~---~~~~----~~~~l~~~~~~---------------------------------------------~ 324 (490)
++|.+++..+.+ +|.. .-|.++..-.. .
T Consensus 241 ~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988764 1211 11111111000 0
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHcCCCCC-chHHHHHHHHHhhcCChHHH
Q 011249 325 GKSQEALDMFLKMRNEGIEPNQVTFIGVLTACS--HGGLVEDGCKQFELMTRVFGIKPL-TEHLTCMVDLLGRSGQLEKA 401 (490)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 401 (490)
+..+.+.++-... .+..|. ..+..++..+. +......+..++....+ +.+.. ..+...++......|+++.|
T Consensus 321 nk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 321 NKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred hhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 0111111111000 011222 23333333322 11245667777777765 33333 34455667788899999999
Q ss_pred HHHHH--------hcc-CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHh----cCCC---CCchHHHHHHHHHhcCCcc
Q 011249 402 HSLIM--------DYK-DFCDAGTWGALLGACKVHVNAELGEIAARHLLE----LGPE---KTGNSALLANIYASMGKWK 465 (490)
Q Consensus 402 ~~~~~--------~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~ 465 (490)
.+++. .+. ....+.+...+...+.+.++.+.|..++..++. ..+. -...+..++..-.+.|+-+
T Consensus 396 ~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 99998 443 334555666677778888888889888888875 2222 2234555666667789999
Q ss_pred hHHHHHHHhhhccc
Q 011249 466 DSEIVKMMISETEK 479 (490)
Q Consensus 466 ~A~~~~~~~~~~~~ 479 (490)
+|...++++.+.+.
T Consensus 476 ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 476 EASSLLEELVKFNP 489 (652)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999987543
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.16 E-value=7.8e-10 Score=97.61 Aligned_cols=252 Identities=13% Similarity=0.031 Sum_probs=172.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChH
Q 011249 218 VCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLD 297 (490)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 297 (490)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.+ ...+.+.. +|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556789999887665 32222223345666778888888987643 34444444 666666666665555545666
Q ss_pred HHHHHHhcccC-C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 011249 298 LAWREFSRIKN-K----DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELM 372 (490)
Q Consensus 298 ~A~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 372 (490)
.+..-+++... + +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666655432 2 2223333334667789999999988652 35566777888999999999999999999
Q ss_pred HHHcCCCCCchHHHHHHHHHh----hcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 373 TRVFGIKPLTEHLTCMVDLLG----RSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 373 ~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
.+ +..| .+...++.++. ..+.+.+|..+|+++. ..+++.+.+.++.++...|++++|.++++++++.+|.
T Consensus 158 ~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 75 3333 44444555443 2347999999999988 3467888899999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCc-chHHHHHHHhhhcccccCCCcccc
Q 011249 447 KTGNSALLANIYASMGKW-KDSEIVKMMISETEKKKSPGCSWI 488 (490)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~ 488 (490)
++.++.+++-+....|+. +.+.+++.+++.. .|.+.||
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~----~p~h~~~ 272 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS----NPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH----TTTSHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh----CCCChHH
Confidence 999999999888999988 6677888888754 4445444
No 91
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.16 E-value=6.8e-08 Score=90.89 Aligned_cols=191 Identities=11% Similarity=0.121 Sum_probs=86.3
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHH
Q 011249 254 ACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDM 333 (490)
Q Consensus 254 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 333 (490)
+......|.+|..+++.+.... .....|..+.+-|...|+++.|.++|.+.. .++-.|..|.+.|+|+.|.++
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHH
Confidence 3344455555555555554442 222334445555555555555555554322 233344555555555555555
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCC
Q 011249 334 FLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCD 413 (490)
Q Consensus 334 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 413 (490)
-.+... .......|..-..-..+.|++.+|.+++-.+.. |+ ..+.+|-+.|..+..+++.++-....-
T Consensus 814 a~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----p~-----~aiqmydk~~~~ddmirlv~k~h~d~l 881 (1636)
T KOG3616|consen 814 AEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----PD-----KAIQMYDKHGLDDDMIRLVEKHHGDHL 881 (1636)
T ss_pred HHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----ch-----HHHHHHHhhCcchHHHHHHHHhChhhh
Confidence 443321 122223333333334455555555544433211 22 123445555555555555544432222
Q ss_pred hhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHH
Q 011249 414 AGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVK 471 (490)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (490)
..+...+..-+...|+...|++.|-++-. +..-+++|...+.|++|.++-
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHHH
Confidence 33444444445555555555554443322 333344444445555544443
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.12 E-value=6.4e-07 Score=94.50 Aligned_cols=353 Identities=12% Similarity=0.056 Sum_probs=216.8
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCHh--HHHHHHHHHHhCCChHHHHHHHHHhcc----CCchhHHHHHHHHHhcCChhHHH
Q 011249 126 GYTKIGLMDDAQRLFDSMAERNVI--SWSAMVAGYANCGNMKAAKEFYDRMTE----KNSVTWVAMIAGYGKCGEVREAK 199 (490)
Q Consensus 126 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~ 199 (490)
.+...|++.+|..........+.. ............|+++.+...++.+.. .++.........+...|++++|.
T Consensus 350 ~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~ 429 (903)
T PRK04841 350 AWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVN 429 (903)
T ss_pred HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHH
Confidence 466677777777766655443221 122223445567788877777776631 23444444555666778888888
Q ss_pred HHHhhcCC----C----C----HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccCh----hhHHHHHHHHhccCChHH
Q 011249 200 KVFDEISE----P----D----ASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISE----VAMVGAISACTQLGDVEM 263 (490)
Q Consensus 200 ~~~~~~~~----~----~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~ 263 (490)
..+..... . + ......+...+...|++++|...+++....-...+. .....+...+...|++++
T Consensus 430 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~ 509 (903)
T PRK04841 430 TLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELAR 509 (903)
T ss_pred HHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHH
Confidence 87765432 1 1 112223345566788999999888887653111121 234455556777899999
Q ss_pred HHHHHHHHHhcCC---CC--chhHHHHHHHHHHhcCChHHHHHHHhcccC-------C----ChhHHHHHHHHHHhcCCh
Q 011249 264 AAILAKHVDEGCC---DR--TNYVSNALIHMHSKCGYLDLAWREFSRIKN-------K----DVISYSSMITAFADHGKS 327 (490)
Q Consensus 264 a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~ 327 (490)
|...+.+...... .+ .......+...+...|+++.|...+++... + ....+..+...+...|++
T Consensus 510 A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~ 589 (903)
T PRK04841 510 ALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL 589 (903)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH
Confidence 9888887754311 11 123445566777888999999888776543 1 112344555667778999
Q ss_pred HHHHHHHHHHHHc--CCCCc--HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHH-----HHHHHHHhhcCCh
Q 011249 328 QEALDMFLKMRNE--GIEPN--QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHL-----TCMVDLLGRSGQL 398 (490)
Q Consensus 328 ~~a~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~ 398 (490)
++|...+++.... ...+. ...+..+...+...|+.+.|...++..............+ ...+..+...|+.
T Consensus 590 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 669 (903)
T PRK04841 590 DEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDK 669 (903)
T ss_pred HHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCH
Confidence 9999888887652 11122 2344445566778899999988888876521111111111 1122444567888
Q ss_pred HHHHHHHHhccCC--CChh----hHHHHHHHHhhhCChHHHHHHHHHHHhcC------CCCCchHHHHHHHHHhcCCcch
Q 011249 399 EKAHSLIMDYKDF--CDAG----TWGALLGACKVHVNAELGEIAARHLLELG------PEKTGNSALLANIYASMGKWKD 466 (490)
Q Consensus 399 ~~A~~~~~~~~~~--~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 466 (490)
+.|.+++...... .... .+..+..++...|++++|...++++.... +.....+..++.++.+.|+.++
T Consensus 670 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~ 749 (903)
T PRK04841 670 EAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE 749 (903)
T ss_pred HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH
Confidence 9998888765521 1111 13455667788899999999999887742 1223466778888999999999
Q ss_pred HHHHHHHhhhcc
Q 011249 467 SEIVKMMISETE 478 (490)
Q Consensus 467 A~~~~~~~~~~~ 478 (490)
|.+.+.+..+..
T Consensus 750 A~~~L~~Al~la 761 (903)
T PRK04841 750 AQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHh
Confidence 999988887654
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=2.2e-07 Score=86.66 Aligned_cols=194 Identities=10% Similarity=-0.036 Sum_probs=97.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCcH--HHHHHHHHHhc
Q 011249 284 NALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGI-EPNQ--VTFIGVLTACS 357 (490)
Q Consensus 284 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~ 357 (490)
..+...+...|++++|...+++..+ .+...+..+..++...|++++|...+++...... .|+. ..+..+...+.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3444555666666666666666554 2344555566666666666666666666655311 1221 12334555566
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCCchHH-H--HHHHHHhhcCChHHHHHH--H-Hhcc-C-CCC--hhhHHHHHHHHhhh
Q 011249 358 HGGLVEDGCKQFELMTRVFGIKPLTEHL-T--CMVDLLGRSGQLEKAHSL--I-MDYK-D-FCD--AGTWGALLGACKVH 427 (490)
Q Consensus 358 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~~-~-~~~--~~~~~~l~~~~~~~ 427 (490)
..|++++|..++++........+..... + .++..+...|..+.+.++ + .... . +.. .........++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 6666666666666654310101111111 1 122222333322222222 1 1111 0 101 11112344556667
Q ss_pred CChHHHHHHHHHHHhcC-C--------CCCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 428 VNAELGEIAARHLLELG-P--------EKTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 428 g~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
|+.+.|...++.+.... . .........+.++...|++++|.+.+......
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777765522 1 12345556677778888888888888776654
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=5.7e-09 Score=95.49 Aligned_cols=217 Identities=15% Similarity=0.078 Sum_probs=172.9
Q ss_pred HhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHH
Q 011249 255 CTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEAL 331 (490)
Q Consensus 255 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 331 (490)
+.+.|++.+|.-.|+..++.. |-+...|.-|.......++-..|+..+.+..+ .+......|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 457788888888888888876 66778888888888888888888888887766 35567777777888888888999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHH-----------HHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHH
Q 011249 332 DMFLKMRNEGIEPNQVTFIGVL-----------TACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEK 400 (490)
Q Consensus 332 ~~~~~~~~~~~~p~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 400 (490)
+.++.-+... |... .+. ..+.....+....++|-.+....+..+|+.+...|.-.|--.|++++
T Consensus 374 ~~L~~Wi~~~--p~y~---~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKYV---HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhC--ccch---hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9888876532 1110 000 12223334556667777776655666889999999999999999999
Q ss_pred HHHHHHhcc-CC-CChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 401 AHSLIMDYK-DF-CDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 401 A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
|++.|+... .+ .|...||.|...+....+.++|+..|.+++++.|....+.+.|+-.|...|.|++|.+.|=..+..
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999998877 44 467799999999999999999999999999999999999999999999999999999998766554
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.08 E-value=4.2e-07 Score=84.78 Aligned_cols=290 Identities=11% Similarity=0.007 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhccC---Cch---hHHHHHHHHHhcCChhHHHHHHhhcCC--C-CHHhHHHHHHHH
Q 011249 150 SWSAMVAGYANCGNMKAAKEFYDRMTEK---NSV---TWVAMIAGYGKCGEVREAKKVFDEISE--P-DASCWAAMTVCY 220 (490)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 220 (490)
.|..+...+...|+.+.+.+.+.+..+. +.. ........+...|++++|.+.+++..+ | +...+.. ...+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHH
Confidence 4445555555566666655555544321 111 112223344556677777776666543 2 2223331 1122
Q ss_pred Hh----cCChHHHHHHHHHHHHcCcccCh-hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 011249 221 VQ----NGYAKAAIEMYKVMRQENVRISE-VAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGY 295 (490)
Q Consensus 221 ~~----~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 295 (490)
.. .+..+.+.+.+.. .....|+. .....+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22 3344444444433 11112222 233345556677777777777777777765 4556666777777777788
Q ss_pred hHHHHHHHhcccC--C---Ch--hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCcHHHH-H--HHHHHhcCCCChHH
Q 011249 296 LDLAWREFSRIKN--K---DV--ISYSSMITAFADHGKSQEALDMFLKMRNEGI-EPNQVTF-I--GVLTACSHGGLVED 364 (490)
Q Consensus 296 ~~~A~~~~~~~~~--~---~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~ 364 (490)
+++|...+++..+ | +. ..|..+...+...|++++|..++++...... .+..... . .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 8888777776654 1 11 2344566777788888888888888754321 1111111 1 22222333343332
Q ss_pred HHHHHHHHHHHc--CCCCC--chHHHHHHHHHhhcCChHHHHHHHHhccC--CC---C------hhhHHHHHHHHhhhCC
Q 011249 365 GCKQFELMTRVF--GIKPL--TEHLTCMVDLLGRSGQLEKAHSLIMDYKD--FC---D------AGTWGALLGACKVHVN 429 (490)
Q Consensus 365 a~~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~---~------~~~~~~l~~~~~~~g~ 429 (490)
+... +.+.... ..+.. .........++...|+.++|..+++.+.. .. . .........++...|+
T Consensus 244 ~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 244 GDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred HHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 2222 2221100 11111 11122456677788888888888877651 11 1 1112222344568899
Q ss_pred hHHHHHHHHHHHhcC
Q 011249 430 AELGEIAARHLLELG 444 (490)
Q Consensus 430 ~~~a~~~~~~~~~~~ 444 (490)
.++|.+.+..++...
T Consensus 323 ~~~A~~~L~~al~~a 337 (355)
T cd05804 323 YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887643
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.04 E-value=2.1e-08 Score=83.68 Aligned_cols=150 Identities=10% Similarity=-0.004 Sum_probs=106.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCCh
Q 011249 319 TAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQL 398 (490)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 398 (490)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+ ..+.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence 356777777776444322211 11 012235666777777777776 4566777888888888888888
Q ss_pred HHHHHHHHhcc--CCCChhhHHHHHHHH-hhhCC--hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHH
Q 011249 399 EKAHSLIMDYK--DFCDAGTWGALLGAC-KVHVN--AELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMM 473 (490)
Q Consensus 399 ~~A~~~~~~~~--~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (490)
++|...|++.. .+.+...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|...+++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888887766 344666777777754 56666 48888888888888888888888888888888888888888888
Q ss_pred hhhcccccC
Q 011249 474 ISETEKKKS 482 (490)
Q Consensus 474 ~~~~~~~~~ 482 (490)
+.+.....+
T Consensus 170 aL~l~~~~~ 178 (198)
T PRK10370 170 VLDLNSPRV 178 (198)
T ss_pred HHhhCCCCc
Confidence 877655433
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=4e-06 Score=80.38 Aligned_cols=308 Identities=13% Similarity=0.155 Sum_probs=179.0
Q ss_pred CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCCC-----------CCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 011249 31 HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPK-----------CKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGV 99 (490)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 99 (490)
.+.. +|..+.++|.+..+ ++-|.-.+-.|.. .+....=..........|..++|..+|.+-.+..
T Consensus 755 kS~~--vW~nmA~McVkT~R-LDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D- 830 (1416)
T KOG3617|consen 755 KSDS--VWDNMASMCVKTRR-LDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD- 830 (1416)
T ss_pred hhhH--HHHHHHHHhhhhcc-ccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH-
Confidence 3455 89999999999998 8888877766641 1111222233334456799999999999887741
Q ss_pred CCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCCC-HhHHHHHHHHHHhCCChHHHHHHHHHhcc--
Q 011249 100 LTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERN-VISWSAMVAGYANCGNMKAAKEFYDRMTE-- 176 (490)
Q Consensus 100 ~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 176 (490)
+++ ..|-..|.+++|.++-+.-.+-. ..||......+-..+|.+.|++.|++...
T Consensus 831 ---------LlN-------------KlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ha 888 (1416)
T KOG3617|consen 831 ---------LLN-------------KLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHA 888 (1416)
T ss_pred ---------HHH-------------HHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChH
Confidence 222 23677899999988876554422 24666677777788888888888887642
Q ss_pred ---------------------CCchhHHHHHHHHHhcCChhHHHHHHhhcCC------------------------CCHH
Q 011249 177 ---------------------KNSVTWVAMIAGYGKCGEVREAKKVFDEISE------------------------PDAS 211 (490)
Q Consensus 177 ---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------------~~~~ 211 (490)
+|...|......+-..|+.|.|+.+|..... .|..
T Consensus 889 fev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~A 968 (1416)
T KOG3617|consen 889 FEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKA 968 (1416)
T ss_pred HHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHH
Confidence 1555666677777778888888888876542 3445
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC--ccc--ChhhHHHHHHHHhcc--CChHHHHHHHHHHHhcCCCCchhHHHH
Q 011249 212 CWAAMTVCYVQNGYAKAAIEMYKVMRQEN--VRI--SEVAMVGAISACTQL--GDVEMAAILAKHVDEGCCDRTNYVSNA 285 (490)
Q Consensus 212 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p--~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~ 285 (490)
....|.+.|-..|++.+|..+|.+.+.-. ++. ....-..|.+.+... .+.-.|-.+|++. |. -...
T Consensus 969 AcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~ 1040 (1416)
T KOG3617|consen 969 ACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHK 1040 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhH
Confidence 55567777777777777777776654210 000 000011112222111 1222333333332 10 1112
Q ss_pred HHHHHHhcCChHHHHHHHhccc---------C-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHc----------C
Q 011249 286 LIHMHSKCGYLDLAWREFSRIK---------N-----KDVISYSSMITAFADHGKSQEALDMFLKMRNE----------G 341 (490)
Q Consensus 286 l~~~~~~~~~~~~A~~~~~~~~---------~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~ 341 (490)
.+..|-+.|.+.+|+++--.-. + .|+...+.-.+.+....++++|..++-...+. |
T Consensus 1041 AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~n 1120 (1416)
T KOG3617|consen 1041 AVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRN 1120 (1416)
T ss_pred HHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445666676666655421111 1 36666666666666667777776655443321 1
Q ss_pred ----------------CCCcH----HHHHHHHHHhcCCCChHHHHHHHHHH
Q 011249 342 ----------------IEPNQ----VTFIGVLTACSHGGLVEDGCKQFELM 372 (490)
Q Consensus 342 ----------------~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~ 372 (490)
-.|+. .....+...|.++|.+..|-+-|.+.
T Consensus 1121 v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1121 VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 11222 24555666677777777776666555
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.03 E-value=4.6e-07 Score=77.90 Aligned_cols=281 Identities=15% Similarity=0.080 Sum_probs=207.5
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCHhHHHHHH---HHHHhCCChHHHHHHHHHhccCCchhHH---HHHHHHHhcCChhHH
Q 011249 125 CGYTKIGLMDDAQRLFDSMAERNVISWSAMV---AGYANCGNMKAAKEFYDRMTEKNSVTWV---AMIAGYGKCGEVREA 198 (490)
Q Consensus 125 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~A 198 (490)
..+...|++.+|+.-|....+-|+..|.++. ..|...|+-..|+.-+.+.++..+..+. .-...+.+.|.++.|
T Consensus 46 k~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A 125 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQA 125 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHH
Confidence 3466779999999999999987777776654 5688899999999999988864433333 334578899999999
Q ss_pred HHHHhhcCC--CC--------------HHhH--HHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCC
Q 011249 199 KKVFDEISE--PD--------------ASCW--AAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGD 260 (490)
Q Consensus 199 ~~~~~~~~~--~~--------------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 260 (490)
..-|+.+.+ |+ ...| ...+..+...|+...|+.....+.+.. +-|...+..-..+|...|+
T Consensus 126 ~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e 204 (504)
T KOG0624|consen 126 EADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGE 204 (504)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCc
Confidence 999998865 21 1112 223445667899999999999998753 3377788888889999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--CChh----HHHHH---------HHHHHhcC
Q 011249 261 VEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--KDVI----SYSSM---------ITAFADHG 325 (490)
Q Consensus 261 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~l---------~~~~~~~~ 325 (490)
+..|+.-++.+.+.. ..+...+--+...+...|+.+.++...++-.+ ||-. .|..+ +......+
T Consensus 205 ~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~ 283 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEK 283 (504)
T ss_pred HHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999998888776 44555555677888888999999888887766 3221 12211 12344567
Q ss_pred ChHHHHHHHHHHHHcCCCCcHH---HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHH
Q 011249 326 KSQEALDMFLKMRNEGIEPNQV---TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAH 402 (490)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 402 (490)
+|-+++...+...+........ .+..+-.++...|++.+|++...++.. -.+.|+.++..-..+|.-...++.|+
T Consensus 284 ~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI 361 (504)
T KOG0624|consen 284 HWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAI 361 (504)
T ss_pred hHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHH
Confidence 8888888888887753221222 345555667888999999999999976 33444888888889999999999999
Q ss_pred HHHHhcc
Q 011249 403 SLIMDYK 409 (490)
Q Consensus 403 ~~~~~~~ 409 (490)
.-|+...
T Consensus 362 ~dye~A~ 368 (504)
T KOG0624|consen 362 HDYEKAL 368 (504)
T ss_pred HHHHHHH
Confidence 9998877
No 99
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.01 E-value=1e-06 Score=83.22 Aligned_cols=188 Identities=15% Similarity=0.185 Sum_probs=102.5
Q ss_pred HHHHHhCCChHHHHHHHHHhccCC--chhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 011249 155 VAGYANCGNMKAAKEFYDRMTEKN--SVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEM 232 (490)
Q Consensus 155 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 232 (490)
+.+.....++.+|+.+++.+...+ ..-|..+.+.|...|+++.|.++|.+.. .++--|..|.+.|+|+.|.++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHH
Confidence 344555666667777776666542 2345666667777777777777775542 344556667777777777666
Q ss_pred HHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCC-Ch
Q 011249 233 YKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNK-DV 311 (490)
Q Consensus 233 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~ 311 (490)
-.+.. |.......|..-..-+-..|++.+|+++|-.+. .|+. .|.+|-+.|..++.+++.++-... -.
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~ 882 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLH 882 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhh
Confidence 54443 223344455555555556666666666553321 2222 355666666666666666544321 12
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHH
Q 011249 312 ISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCK 367 (490)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 367 (490)
.+...+..-|-..|+...|+..|-+..+ |..-+..|...+.|++|.+
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayr 929 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYR 929 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHH
Confidence 3444455555566666666665544332 3333444444555554443
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.99 E-value=4.8e-08 Score=85.07 Aligned_cols=182 Identities=11% Similarity=-0.003 Sum_probs=118.2
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcccC--CC-h---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH----H
Q 011249 278 RTNYVSNALIHMHSKCGYLDLAWREFSRIKN--KD-V---ISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQ----V 347 (490)
Q Consensus 278 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~ 347 (490)
.....+..++..+...|+++.|...|+++.+ |+ + ..+..+..++...|++++|...++++.+. .|+. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 3445566677777778888888888877655 22 1 35566777777888888888888887764 3321 1
Q ss_pred HHHHHHHHhcCC--------CChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHH
Q 011249 348 TFIGVLTACSHG--------GLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGA 419 (490)
Q Consensus 348 ~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 419 (490)
.+..+..++... |+.++|.+.++.+.+. .+.+...+..+... +...... ......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 344444445433 5677777777777663 22222222211111 0000000 001124
Q ss_pred HHHHHhhhCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCcchHHHHHHHhhhcc
Q 011249 420 LLGACKVHVNAELGEIAARHLLELGPEKT---GNSALLANIYASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 478 (490)
+...+...|++++|+..++++++..|+++ .++..++.++.+.|++++|..+++.+....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55678899999999999999999877654 688999999999999999999999887653
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=2.7e-05 Score=76.57 Aligned_cols=144 Identities=15% Similarity=0.204 Sum_probs=110.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHH
Q 011249 310 DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMV 389 (490)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 389 (490)
.+..|..+..+-.+.|...+|++-|-+ .-|+..|..+++.+.+.|.+++-.+++...+++ .-.|... ..|+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 456788888888888888888776654 236678899999999999999999999988885 6666655 5688
Q ss_pred HHHhhcCChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHH
Q 011249 390 DLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEI 469 (490)
Q Consensus 390 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 469 (490)
.+|++.++..+-.+++ ..|+......+..-|...|.++.|.-+|.. .+-|..|+..+...|+++.|..
T Consensus 1174 ~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFI----AGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHh----cCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999988876654 357777777888888888888888777763 4446677777777777777776
Q ss_pred HHHHh
Q 011249 470 VKMMI 474 (490)
Q Consensus 470 ~~~~~ 474 (490)
.-++.
T Consensus 1242 ~aRKA 1246 (1666)
T KOG0985|consen 1242 AARKA 1246 (1666)
T ss_pred Hhhhc
Confidence 65543
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.97 E-value=3.9e-06 Score=88.66 Aligned_cols=319 Identities=9% Similarity=-0.056 Sum_probs=211.2
Q ss_pred HHHHhcCCHHHHHHHHhhcCC----CCHhHHHHHHHHHHhCCChHHHHHHHHHhccC----C---c-----hhHHHHHHH
Q 011249 125 CGYTKIGLMDDAQRLFDSMAE----RNVISWSAMVAGYANCGNMKAAKEFYDRMTEK----N---S-----VTWVAMIAG 188 (490)
Q Consensus 125 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---~-----~~~~~l~~~ 188 (490)
......|+++.+..+++.+.. .+..........+...|+++++...+...... + . .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 345667888888888887742 23333344555667889999999998876531 1 1 112233455
Q ss_pred HHhcCChhHHHHHHhhcCC----CCH----HhHHHHHHHHHhcCChHHHHHHHHHHHHc----Cc-ccChhhHHHHHHHH
Q 011249 189 YGKCGEVREAKKVFDEISE----PDA----SCWAAMTVCYVQNGYAKAAIEMYKVMRQE----NV-RISEVAMVGAISAC 255 (490)
Q Consensus 189 ~~~~~~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~l~~~~ 255 (490)
+...|++++|...+++... .+. ...+.+...+...|++++|...+++.... |. .+...++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 6788999999999887543 221 34566777788899999999999888642 11 11123455667778
Q ss_pred hccCChHHHHHHHHHHHhc----CCCC---chhHHHHHHHHHHhcCChHHHHHHHhcccC------C--ChhHHHHHHHH
Q 011249 256 TQLGDVEMAAILAKHVDEG----CCDR---TNYVSNALIHMHSKCGYLDLAWREFSRIKN------K--DVISYSSMITA 320 (490)
Q Consensus 256 ~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~--~~~~~~~l~~~ 320 (490)
...|+++.|...+++.... +.+. ....+..+...+...|++++|...+.+... + ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8999999999998876542 2111 223345566777888999999988887643 1 12344556667
Q ss_pred HHhcCChHHHHHHHHHHHHcC--CCCcHH--HH--HHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchH----HHHHHH
Q 011249 321 FADHGKSQEALDMFLKMRNEG--IEPNQV--TF--IGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEH----LTCMVD 390 (490)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~--~~p~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~l~~ 390 (490)
+...|++++|...++++.... ...... .. ...+..+...|+.+.|...+...... ....... ...+..
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP--EFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC--CCccchhHHHHHHHHHH
Confidence 888999999999998886521 111110 11 11123345578999999887776431 1111111 345777
Q ss_pred HHhhcCChHHHHHHHHhcc-------CCC-ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCC
Q 011249 391 LLGRSGQLEKAHSLIMDYK-------DFC-DAGTWGALLGACKVHVNAELGEIAARHLLELGP 445 (490)
Q Consensus 391 ~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 445 (490)
++...|++++|...+++.. ... ...+...+..++...|+.++|...+.++++...
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 8889999999999998765 111 123556667788899999999999999998663
No 103
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=3.9e-06 Score=80.46 Aligned_cols=240 Identities=14% Similarity=0.138 Sum_probs=146.7
Q ss_pred HHHHHHH--HHhcCCCCHHHHHHHhccCCCCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhc
Q 011249 37 YAQFLIR--LLQLPGDNLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACA 114 (490)
Q Consensus 37 ~~~~l~~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 114 (490)
+-..+++ .|.--|+ .+.|.+-.+.+.+. ..|..+.+.|.+.++.+-|.-.+-.|.... . -..+=.+ .
T Consensus 728 TRkaml~FSfyvtiG~-MD~AfksI~~IkS~---~vW~nmA~McVkT~RLDVAkVClGhm~~aR---g---aRAlR~a-~ 796 (1416)
T KOG3617|consen 728 TRKAMLDFSFYVTIGS-MDAAFKSIQFIKSD---SVWDNMASMCVKTRRLDVAKVCLGHMKNAR---G---ARALRRA-Q 796 (1416)
T ss_pred HHHhhhceeEEEEecc-HHHHHHHHHHHhhh---HHHHHHHHHhhhhccccHHHHhhhhhhhhh---h---HHHHHHH-H
Confidence 4455544 5677788 89888888777653 679999999999999998888887775421 0 1111111 1
Q ss_pred CCC-ChHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccC-CchhHHHHHHHHHhc
Q 011249 115 RVP-SLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEK-NSVTWVAMIAGYGKC 192 (490)
Q Consensus 115 ~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~ 192 (490)
..+ +....+.-.-...|.+++|+.++.+-.+ |..|=..|...|.+++|+++-+.-.+- =..||......+-..
T Consensus 797 q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 797 QNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred hCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 111 1112222234567888999988887654 334556677788999998887654432 234666677777778
Q ss_pred CChhHHHHHHhhcCCC-----------------------CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHH
Q 011249 193 GEVREAKKVFDEISEP-----------------------DASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMV 249 (490)
Q Consensus 193 ~~~~~A~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 249 (490)
+|.+.|++.|++...+ |...|.-...-.-..|+.+.|+.+|...+. |.
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 8888888888876532 222233333333344555555555544432 34
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhccc
Q 011249 250 GAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIK 307 (490)
Q Consensus 250 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 307 (490)
.+++..+-.|+.++|.++-++ ..|......|.+.|...|++.+|..+|.+..
T Consensus 943 s~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 455555566666666665443 2244444557777777777777777776543
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=3.6e-07 Score=77.00 Aligned_cols=302 Identities=13% Similarity=0.068 Sum_probs=146.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhccC---CchhHHHHHHHHHhcCChhHHHHHHhhcCC--CCHHhHHH-HHHHHHhcC
Q 011249 151 WSAMVAGYANCGNMKAAKEFYDRMTEK---NSVTWVAMIAGYGKCGEVREAKKVFDEISE--PDASCWAA-MTVCYVQNG 224 (490)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-l~~~~~~~g 224 (490)
+.+.+..+.+..+++.|++++..-.+. +......+..+|....++..|-..++++.. |...-|.. -...+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 344445556666777777776665543 334456666667777777777777776655 43333332 234555666
Q ss_pred ChHHHHHHHHHHHHcCcccChh--hHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 011249 225 YAKAAIEMYKVMRQENVRISEV--AMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWRE 302 (490)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 302 (490)
.+..|+++...|... |+.. ....-.......+++..+..+.++....+ +..+.+.......+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 777777776666542 1111 11111112334566666666666554322 233333344445566666666666
Q ss_pred HhcccC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH-HHHHHHHh--cCCCChHHHHHHHHHHHHH
Q 011249 303 FSRIKN----KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVT-FIGVLTAC--SHGGLVEDGCKQFELMTRV 375 (490)
Q Consensus 303 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~--~~~g~~~~a~~~~~~~~~~ 375 (490)
|+...+ .....|+..+.. .+.|+++.|+++..+++++|++-.+.. ......+- ...|+. ..+....
T Consensus 167 FqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt---~~lh~Sa--- 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT---LVLHQSA--- 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch---HHHHHHH---
Confidence 666554 233445544433 345666666666666666665432110 00000000 000000 0000000
Q ss_pred cCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc----CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchH
Q 011249 376 FGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK----DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNS 451 (490)
Q Consensus 376 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 451 (490)
-...+|.-.-.+.+.|+++.|.+.+..|+ ...|+.|...+.-. -..+++....+-+.-+++++|-.+.++
T Consensus 240 -----l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETF 313 (459)
T KOG4340|consen 240 -----LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETF 313 (459)
T ss_pred -----HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHH
Confidence 01112222233445666666666666665 22344454444321 123444455555555555666555566
Q ss_pred HHHHHHHHhcCCcchHHHHH
Q 011249 452 ALLANIYASMGKWKDSEIVK 471 (490)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~ 471 (490)
.++.-.|++..-++-|-.++
T Consensus 314 ANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHH
Confidence 66666666665555555544
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.95 E-value=2.3e-08 Score=78.88 Aligned_cols=122 Identities=10% Similarity=-0.017 Sum_probs=83.3
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--
Q 011249 332 DMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-- 409 (490)
Q Consensus 332 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 409 (490)
.++++..+ +.|+. +......+...|++++|...|+.+.. --+.+...+..+..++.+.|++++|...|+...
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555554 34443 33455566777777777777777765 344566677777777777777777777777665
Q ss_pred CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 011249 410 DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYA 459 (490)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 459 (490)
.+.++..+..+..++...|++++|+..|+++++..|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34456677777777777777777777777777777777777776666544
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=2.5e-06 Score=83.44 Aligned_cols=239 Identities=15% Similarity=0.116 Sum_probs=145.4
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 011249 209 DASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIH 288 (490)
Q Consensus 209 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 288 (490)
.+..|..+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-.+++..+++....|.+. ..|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 3457888888888888888888766442 266778888888888888888888887777765555444 46788
Q ss_pred HHHhcCChHHHHHHHhcccC-----------------------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 011249 289 MHSKCGYLDLAWREFSRIKN-----------------------KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPN 345 (490)
Q Consensus 289 ~~~~~~~~~~A~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 345 (490)
+|++.+++.+.++++.--.. .++.-|..+...+...|++..|...-+++ -+
T Consensus 1175 AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred HHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 88888887776655421100 13344555555666666666665544432 24
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHH
Q 011249 346 QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGA 423 (490)
Q Consensus 346 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 423 (490)
..||..+-.+|...+.+..|. +-- .++.....-...++.-|...|-+++.+.+++... .+..-..|+-|.-.
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAIL 1322 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHH
Confidence 456777767776655554331 111 1222334445667788888888888888887655 23344466666655
Q ss_pred HhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHH
Q 011249 424 CKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMM 473 (490)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (490)
|.+. .+++..+.++-....- + .--+++++.++--|.+..=++.+
T Consensus 1323 Ysky-kp~km~EHl~LFwsRv-N----ipKviRA~eqahlW~ElvfLY~~ 1366 (1666)
T KOG0985|consen 1323 YSKY-KPEKMMEHLKLFWSRV-N----IPKVIRAAEQAHLWSELVFLYDK 1366 (1666)
T ss_pred HHhc-CHHHHHHHHHHHHHhc-c----hHHHHHHHHHHHHHHHHHHHHHh
Confidence 5544 5666666666555421 0 11244555555556655555443
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.91 E-value=1.7e-07 Score=94.26 Aligned_cols=195 Identities=13% Similarity=0.085 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcccCC--------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHH
Q 011249 280 NYVSNALIHMHSKCGYLDLAWREFSRIKNK--------DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIG 351 (490)
Q Consensus 280 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 351 (490)
...|-..+......++.++|++++++.... -...|.+++.....-|.-+...++|+++.+. --....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence 334444444444444444444444444320 1123444444444444444444444444441 111123444
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCC---ChhhHHHHHHHHhhh
Q 011249 352 VLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFC---DAGTWGALLGACKVH 427 (490)
Q Consensus 352 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~ 427 (490)
|...|.+.+..++|.++++.|.++++ .....|..++..+.+..+-+.|..++.+.. .-| ......-.+..-.+.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 44444444555555555555544333 333444444444444444444444443332 111 122222333333444
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcc
Q 011249 428 VNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 428 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 478 (490)
||.+++..+|+..+...|.....|+.+++.-.+.|+.+.++.+|+++...+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 555555555555555455444555555555555555555555555444443
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.89 E-value=3.8e-08 Score=77.68 Aligned_cols=108 Identities=10% Similarity=-0.094 Sum_probs=93.8
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcC
Q 011249 367 KQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELG 444 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (490)
.++++..+ +.|+ .+..+...+...|++++|...|+... .+.+...|..+..++...|++++|+..|+++.+.+
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45566554 3344 45567888999999999999998877 45577899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 445 PEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 445 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
|+++.++..++.++.+.|++++|...+++..+..+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999887654
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.89 E-value=1.6e-05 Score=72.87 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=62.2
Q ss_pred HHHHHhhhcCCCCchhHhHHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCChhHHHHHHHHHHh
Q 011249 19 VHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHR 96 (490)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 96 (490)
..+.+.. +|-|.. .|+.|++-+... . .++++..++++. .|.....|..-|..-.+..+++....+|.+...
T Consensus 9 ~~~rie~---nP~di~--sw~~lire~qt~-~-~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 9 PRERIEE---NPYDID--SWSQLIREAQTQ-P-IDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHHhc---CCccHH--HHHHHHHHHccC-C-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3566776 778999 999999998877 5 999999999986 566668899999999999999999999999766
Q ss_pred c
Q 011249 97 L 97 (490)
Q Consensus 97 ~ 97 (490)
.
T Consensus 82 k 82 (656)
T KOG1914|consen 82 K 82 (656)
T ss_pred H
Confidence 5
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=2e-07 Score=85.63 Aligned_cols=250 Identities=11% Similarity=-0.046 Sum_probs=178.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChH
Q 011249 218 VCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLD 297 (490)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 297 (490)
.-+.+.|+..+|.-.|+..++..+. +...|..|.......++-..|+..+.+..+.. |.+..+..+|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 3456778888888888887776432 56777777777777788788888888887776 566777777777888888888
Q ss_pred HHHHHHhcccCCC-hhHHHHHH---------HHHHhcCChHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhcCCCChHHHH
Q 011249 298 LAWREFSRIKNKD-VISYSSMI---------TAFADHGKSQEALDMFLKMRN-EGIEPNQVTFIGVLTACSHGGLVEDGC 366 (490)
Q Consensus 298 ~A~~~~~~~~~~~-~~~~~~l~---------~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~ 366 (490)
.|...+++..... ...|.... ..+.....+....++|-++.. .+..+|+.....|.-.|--.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8888777654310 00010000 111122234445555555544 444467777777877788899999999
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCCC-hhhHHHHHHHHhhhCChHHHHHHHHHHHhcC
Q 011249 367 KQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCD-AGTWGALLGACKVHVNAELGEIAARHLLELG 444 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (490)
..|+.+.. --|-|..+||.|.-.++...+.++|+..|.+.. .+|+ +.+...|..+|...|.+++|.+.|-.++.+.
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999987 445568889999999999999999999998876 5565 4577888889999999999999999988765
Q ss_pred CC-----C-----CchHHHHHHHHHhcCCcchHHHHH
Q 011249 445 PE-----K-----TGNSALLANIYASMGKWKDSEIVK 471 (490)
Q Consensus 445 p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~ 471 (490)
+. . -.++.+|-.++...++.|-+.+..
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 43 1 247777777777777777555543
No 111
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.88 E-value=3.5e-06 Score=82.42 Aligned_cols=421 Identities=11% Similarity=0.024 Sum_probs=252.4
Q ss_pred CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCCC--CCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-hhHH
Q 011249 31 HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPK--CKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSG-FTFS 107 (490)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~ 107 (490)
.=.. .|..|...|+...+ ...|.+.|++.-+ ++...++......|++..+++.|..+.-...+. .|-. ..++
T Consensus 490 ~~ap--af~~LG~iYrd~~D-m~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~n 564 (1238)
T KOG1127|consen 490 SLAP--AFAFLGQIYRDSDD-MKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKEN 564 (1238)
T ss_pred chhH--HHHHHHHHHHHHHH-HHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhh
Confidence 3445 78889999988887 8899999988753 333367888888999999999998884333332 2211 1111
Q ss_pred HHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHhccCCch---h
Q 011249 108 SVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE---RNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSV---T 181 (490)
Q Consensus 108 ~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~ 181 (490)
-+-. .-.|.+.++..+|..-|+...+ .|...|..++.+|.+.|++..|+++|.+...-++. .
T Consensus 565 W~~r------------G~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 565 WVQR------------GPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhhc------------cccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 1111 1137788899999999998886 36778889999999999999999999887754332 2
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCC----------CCHHhHHHHHHHHHhcCChHHHHHHHHH-------HHHcCcccC
Q 011249 182 WVAMIAGYGKCGEVREAKKVFDEISE----------PDASCWAAMTVCYVQNGYAKAAIEMYKV-------MRQENVRIS 244 (490)
Q Consensus 182 ~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~~p~ 244 (490)
--...-+.+..|.+.+|...+..+.. .-..++-.+...+.-.|-..+|...+++ .......-+
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 23334445667888888888877653 1112222222222222322233322222 222211111
Q ss_pred hhhHHHHHHHH-----------------------hccCCh---H---HHHHHHHHHHhcCCCCchhHHHHHHHHHHh---
Q 011249 245 EVAMVGAISAC-----------------------TQLGDV---E---MAAILAKHVDEGCCDRTNYVSNALIHMHSK--- 292 (490)
Q Consensus 245 ~~~~~~l~~~~-----------------------~~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 292 (490)
...|-.+..+| ...+.. + -+.+.+-.-.+ ...+...|..++..|.+
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFL 790 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHH
Confidence 11111111111 111111 1 00000000000 11112233333333322
Q ss_pred -cC----ChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHH
Q 011249 293 -CG----YLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVED 364 (490)
Q Consensus 293 -~~----~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 364 (490)
.+ +...|+..+.+..+ .+...|+.|.-. ...|++.-+...|-+-... .+....+|..+.-.+....+++.
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHH
Confidence 11 22356666665544 466677777655 5567777777777666553 13345578888888889999999
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-------CCCChhhHHHHHHHHhhhCChHHHHHHH
Q 011249 365 GCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-------DFCDAGTWGALLGACKVHVNAELGEIAA 437 (490)
Q Consensus 365 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (490)
|...|...+. -.|.+...|..........|+.-++..+|..-. ..++...|.+.......+|+.++-+...
T Consensus 869 A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~ 946 (1238)
T KOG1127|consen 869 AEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTA 946 (1238)
T ss_pred hhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHh
Confidence 9999999875 445556666666666667888888888885521 2344445554444556666666555443
Q ss_pred ----------HHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHh
Q 011249 438 ----------RHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMI 474 (490)
Q Consensus 438 ----------~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (490)
++.....|+...+|...+....+.+.+.+|.+...+.
T Consensus 947 ~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 947 RKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4445567999999999999999999999998887764
No 112
>PLN02789 farnesyltranstransferase
Probab=98.86 E-value=1.5e-06 Score=78.06 Aligned_cols=176 Identities=13% Similarity=0.016 Sum_probs=101.3
Q ss_pred hHHHHHHHhcccC---CChhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHH
Q 011249 296 LDLAWREFSRIKN---KDVISYSSMITAFADHGK--SQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQF 369 (490)
Q Consensus 296 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 369 (490)
+++++..++++.+ ++..+|+...-.+.+.|+ .++++.+++++.+. .| |...|.....++...|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4445544444433 223334433333333333 24556666666653 33 3345655555566666677777777
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHhhc---CCh----HHHHHHHHhcc--CCCChhhHHHHHHHHhhh----CChHHHHHH
Q 011249 370 ELMTRVFGIKPLTEHLTCMVDLLGRS---GQL----EKAHSLIMDYK--DFCDAGTWGALLGACKVH----VNAELGEIA 436 (490)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~----g~~~~a~~~ 436 (490)
+++.+. -+.+...|+....++.+. |.. ++++++..++. .+.+...|+.+...+... +...+|.++
T Consensus 166 ~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 766662 333445555444444333 222 34555554433 444666777777776652 345668888
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcC------------------CcchHHHHHHHhh
Q 011249 437 ARHLLELGPEKTGNSALLANIYASMG------------------KWKDSEIVKMMIS 475 (490)
Q Consensus 437 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 475 (490)
+.++...+|.++.++..|+.+|.+.. ..++|.++++.+.
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 88888888988999999999988642 2366888888773
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.83 E-value=5.1e-07 Score=75.04 Aligned_cols=155 Identities=12% Similarity=0.036 Sum_probs=96.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhh
Q 011249 315 SSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGR 394 (490)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (490)
..+...+...|+-+....+....... ...|.......+....+.|++..|...+.+... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44444555566666666655554431 122333444456666666777777777777665 566666777777777777
Q ss_pred cCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHH
Q 011249 395 SGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKM 472 (490)
Q Consensus 395 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 472 (490)
.|++++|..-|.+.. ...++...+.+.-.+.-.||.+.|..++..+....+.+..+-..|+.+....|+.++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777766665554 334555666666666667777777777777766666667777777777777777777666554
No 114
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.81 E-value=9.8e-07 Score=86.13 Aligned_cols=156 Identities=15% Similarity=0.127 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHhccC---CchhHHHHHHHHHhcCChhHHHHHHhhcCCCC-----HHhHHHHHHHH
Q 011249 149 ISWSAMVAGYANCGNMKAAKEFYDRMTEK---NSVTWVAMIAGYGKCGEVREAKKVFDEISEPD-----ASCWAAMTVCY 220 (490)
Q Consensus 149 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~ 220 (490)
..|..|...|....+...|.+.|++..+- |..+.....+.|++..+++.|..+.-...+.+ ...|....-.|
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 35666666666655666666666666543 44555566666666666666666532222211 11222233344
Q ss_pred HhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHH
Q 011249 221 VQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAW 300 (490)
Q Consensus 221 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 300 (490)
...++..+|+..|+...+..+. |...|..+..+|...|++..|.+.|.++.... |.+...---..-+.+..|.+.+|.
T Consensus 573 Lea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHH
Confidence 5555555555555555544322 44555555556666666666666655554443 122211111222334445555555
Q ss_pred HHHhcc
Q 011249 301 REFSRI 306 (490)
Q Consensus 301 ~~~~~~ 306 (490)
..+..+
T Consensus 651 d~l~~i 656 (1238)
T KOG1127|consen 651 DALGLI 656 (1238)
T ss_pred HHHHHH
Confidence 554443
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.79 E-value=6.3e-07 Score=88.59 Aligned_cols=141 Identities=13% Similarity=0.047 Sum_probs=105.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHH
Q 011249 310 DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQV-TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCM 388 (490)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 388 (490)
++..+..|..+..+.|.+++|+.+++...+ +.|+.. ....+...+.+.+++++|+...++... .-+.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 577778888888888888888888888887 467654 666677778888888888888888876 455556666777
Q ss_pred HHHHhhcCChHHHHHHHHhcc-CCC-ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHH
Q 011249 389 VDLLGRSGQLEKAHSLIMDYK-DFC-DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALL 454 (490)
Q Consensus 389 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 454 (490)
..++.+.|++++|..+|+++. ..| +..++.++..++...|+.++|...|+++.+...+....|..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 788888888888888888777 233 356788888888888888888888888887664434444443
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=8e-06 Score=68.08 Aligned_cols=175 Identities=17% Similarity=0.080 Sum_probs=109.6
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH
Q 011249 267 LAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQ 346 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 346 (490)
+.+.+.......+......-...|...|++++|++...... +......=+..+.+..+.+-|.+.+++|.+ --+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchH
Confidence 33444443333343333444556777777777777777632 233333333445666777888888888876 2244
Q ss_pred HHHHHHHHHhc----CCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHH
Q 011249 347 VTFIGVLTACS----HGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGAL 420 (490)
Q Consensus 347 ~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 420 (490)
.|.+.|..++. ..+...+|.-+|+++.+ ..+|++.+.+..+-++...|++++|..+++... ...++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 56666665543 34567788888888876 577777787777778888888888888887766 33456666666
Q ss_pred HHHHhhhCCh-HHHHHHHHHHHhcCCCCC
Q 011249 421 LGACKVHVNA-ELGEIAARHLLELGPEKT 448 (490)
Q Consensus 421 ~~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 448 (490)
+..-...|.. +--.+.+.++....|+++
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 6555555543 455566677777777754
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=8.9e-06 Score=73.79 Aligned_cols=232 Identities=11% Similarity=0.030 Sum_probs=155.6
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHH---hcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC----
Q 011249 74 LIRNHVLHA-HFRQSILLYAKMH---RLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE---- 145 (490)
Q Consensus 74 l~~~~~~~g-~~~~A~~~~~~m~---~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 145 (490)
=+..+.+.| ++....+.|+++. ..|-.|+..-.+. =.-..++.+++..-+.++.
T Consensus 208 Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~TH------------------Plp~~RIa~lr~ra~q~p~~~~~ 269 (484)
T COG4783 208 GITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTH------------------PLPEERIADLRNRAEQSPPYNKL 269 (484)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcC------------------CCchhHHHHHHHHHHhCCCCCCC
Confidence 344455665 5666677777776 3343444322111 1122456666666666664
Q ss_pred --CCHhHHHHHHHHHHhCCChHHHHHHHHHhccC-CchhHHHHHHHHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHH
Q 011249 146 --RNVISWSAMVAGYANCGNMKAAKEFYDRMTEK-NSVTWVAMIAGYGKCGEVREAKKVFDEISE---PDASCWAAMTVC 219 (490)
Q Consensus 146 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 219 (490)
|+...+...+.+......-..+-.++-+..++ -....--....+...|++++|+..++.+.. .|+..+......
T Consensus 270 d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i 349 (484)
T COG4783 270 DSPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDI 349 (484)
T ss_pred CCccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45566666666655544444444444333332 223333344445677889999998888764 455666677788
Q ss_pred HHhcCChHHHHHHHHHHHHcCcccC-hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHH
Q 011249 220 YVQNGYAKAAIEMYKVMRQENVRIS-EVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDL 298 (490)
Q Consensus 220 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 298 (490)
+.+.|+.++|.+.++++... .|+ ......+..++.+.|++.+|..+++...... +.|+..|..|..+|...|+..+
T Consensus 350 ~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 350 LLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHH
Confidence 99999999999999998876 444 5566677788889999999999988887775 7788889999999999988777
Q ss_pred HHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011249 299 AWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNE 340 (490)
Q Consensus 299 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (490)
+.... ...|...|+++.|...+....+.
T Consensus 427 a~~A~--------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 427 ALLAR--------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHH--------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 76543 44677788999998888888775
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=6.5e-07 Score=84.62 Aligned_cols=213 Identities=10% Similarity=-0.050 Sum_probs=144.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--CChhHHHHHHHHHHhcCCh
Q 011249 250 GAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--KDVISYSSMITAFADHGKS 327 (490)
Q Consensus 250 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 327 (490)
.+...+...|-...|..+++++.. +...+.+|...|+..+|..+..+..+ |++..|..+++......-+
T Consensus 403 ~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 444555566666666666665432 33456667777777777666655443 5666666666665555556
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHh
Q 011249 328 QEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMD 407 (490)
Q Consensus 328 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 407 (490)
++|.++.+..... .-..+.....+.++++++.+.|+.-.+ -.+....+|..+.-+..+.++++.|.+.|..
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 6666665543321 111222223346777888888777766 3344566777777777888888888888866
Q ss_pred cc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccc
Q 011249 408 YK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKK 480 (490)
Q Consensus 408 ~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 480 (490)
.. .+.+...|+++..+|.+.|+-.+|...+.++++.+-.+..++.+..-+....|.+++|.+.+.++.+....
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 55 34456788888888888888888888888888888778888888887888888888888888888766443
No 119
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=2.1e-05 Score=70.75 Aligned_cols=234 Identities=12% Similarity=0.035 Sum_probs=143.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccC-ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 011249 213 WAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLG-DVEMAAILAKHVDEGCCDRTNYVSNALIHMHS 291 (490)
Q Consensus 213 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 291 (490)
+..+-.++...++.++|+.++.++++.... +...|.....++...| +++++...++.+.+.. +.+..+|+.-..++.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 344444555667778888888877765321 3344444444555556 5677888887777765 455555655444455
Q ss_pred hcCCh--HHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCC---CC--
Q 011249 292 KCGYL--DLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHG---GL-- 361 (490)
Q Consensus 292 ~~~~~--~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~-- 361 (490)
+.|+. +++..+++++.+ .+..+|+...-++...|+++++++.++++++.+.. |...|+.....+.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 55542 566777766665 46677777777777888888888888888875422 344555444444333 22
Q ss_pred --hHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhh----cCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhC-----
Q 011249 362 --VEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGR----SGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHV----- 428 (490)
Q Consensus 362 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g----- 428 (490)
.++.+.+..++.. ..+-+...|+.+...+.. .++..+|.+.+.+.. ...+......|+..+....
T Consensus 197 ~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~ 274 (320)
T PLN02789 197 AMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAE 274 (320)
T ss_pred ccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchh
Confidence 2456666666665 345567777777777766 244566777776654 2335556667777765422
Q ss_pred -------------ChHHHHHHHHHHHhcCCCCCchH
Q 011249 429 -------------NAELGEIAARHLLELGPEKTGNS 451 (490)
Q Consensus 429 -------------~~~~a~~~~~~~~~~~p~~~~~~ 451 (490)
..++|.++++.+.+.+|-....+
T Consensus 275 ~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw 310 (320)
T PLN02789 275 FRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYW 310 (320)
T ss_pred hhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHH
Confidence 23667777777765666544433
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.72 E-value=8.8e-07 Score=73.69 Aligned_cols=136 Identities=18% Similarity=0.120 Sum_probs=116.1
Q ss_pred CCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHH
Q 011249 342 IEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGA 419 (490)
Q Consensus 342 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 419 (490)
..|+......+-..+...|+-+....+...... ..+.+......++....+.|++.+|...+++.. .++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 355443335666677788998888888888765 455566677779999999999999999998877 6778899999
Q ss_pred HHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 420 LLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
+.-+|.+.|+++.|..-|.+++++.|+++.++++++..|.-.|++++|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999988765543
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.72 E-value=2.1e-06 Score=71.69 Aligned_cols=154 Identities=10% Similarity=0.054 Sum_probs=113.0
Q ss_pred HHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHH
Q 011249 287 IHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGC 366 (490)
Q Consensus 287 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 366 (490)
+..|...|+++.+....+.+..+. ..+...++.+++...++...+.. +.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445777777777655543332221 01223566778888888877742 346668888888999999999999
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHH-hhcCC--hHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHH
Q 011249 367 KQFELMTRVFGIKPLTEHLTCMVDLL-GRSGQ--LEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLL 441 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (490)
..+++..+ -.+.+...+..+..++ ...|+ .++|.+++++.. .+.+...+..+...+...|++++|+..|++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999887 3455677777888764 67777 589999998877 44567788888889999999999999999999
Q ss_pred hcCCCCCchH
Q 011249 442 ELGPEKTGNS 451 (490)
Q Consensus 442 ~~~p~~~~~~ 451 (490)
+..|.+..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9887765533
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=3e-06 Score=83.88 Aligned_cols=142 Identities=11% Similarity=0.013 Sum_probs=106.8
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHH
Q 011249 276 CDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--K-DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQ-VTFIG 351 (490)
Q Consensus 276 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ 351 (490)
.+.++..+..|..+....|.+++|..+++...+ | +...+..++.++.+.+++++|+..+++.... .|+. .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 356677778888888888888888888888776 4 4556777788888888888888888888874 5544 45666
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHH
Q 011249 352 VLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALL 421 (490)
Q Consensus 352 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 421 (490)
+..++...|++++|..+|+++.. ..+.+...+..+..++...|+.++|...|++.. ..+....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 67778888888888888888886 344456777788888888888888888888776 334444544443
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.70 E-value=1.5e-06 Score=75.69 Aligned_cols=182 Identities=13% Similarity=0.034 Sum_probs=129.8
Q ss_pred cChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCch---hHHHHHHHHHHhcCChHHHHHHHhcccC--CC-hh---H
Q 011249 243 ISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTN---YVSNALIHMHSKCGYLDLAWREFSRIKN--KD-VI---S 313 (490)
Q Consensus 243 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~---~ 313 (490)
.....+..+...+...|+++.|...++.+.+.. |.++ ..+..+..++...|++++|...++++.+ |+ .. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 355678888889999999999999999998765 3332 4567788999999999999999999876 32 22 4
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchH
Q 011249 314 YSSMITAFADH--------GKSQEALDMFLKMRNEGIEPNQV-TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEH 384 (490)
Q Consensus 314 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 384 (490)
+..+..++... |++++|.+.++++.+. .|+.. ....+... ..+... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~--------------~~~~~~-----~~~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM--------------DYLRNR-----LAGK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH--------------HHHHHH-----HHHH
Confidence 55566666654 7889999999999874 45442 22222111 111100 0011
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhcc-CCC----ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 385 LTCMVDLLGRSGQLEKAHSLIMDYK-DFC----DAGTWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 385 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
...+...|.+.|++++|...++... ..| ....+..+..++...|++++|..+++.+....|+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 1246677889999999999998876 222 3467888899999999999999999888876663
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=2.2e-06 Score=81.20 Aligned_cols=188 Identities=13% Similarity=0.076 Sum_probs=157.3
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 011249 276 CDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTA 355 (490)
Q Consensus 276 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 355 (490)
.+|-...-..+...+.+.|-...|..+|+++ ..|.-.+.+|...|+..+|..+..+-.+ -+|++..|..+++.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3555556677889999999999999999975 4677788899999999999999998887 48899999999998
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHH
Q 011249 356 CSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELG 433 (490)
Q Consensus 356 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 433 (490)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.-. .+....+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88877788898888877552 11223333445799999999997544 345677999999889999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcc
Q 011249 434 EIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 434 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 478 (490)
.+.|...+..+|++...|+++..+|.+.|+..+|...+++..+-+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999988765
No 125
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.69 E-value=6.1e-06 Score=83.58 Aligned_cols=219 Identities=16% Similarity=0.143 Sum_probs=175.4
Q ss_pred CC-HhHHHHHHHHHHhCCChHHHHHHHHHhccC--------CchhHHHHHHHHHhcCChhHHHHHHhhcCC--CCHHhHH
Q 011249 146 RN-VISWSAMVAGYANCGNMKAAKEFYDRMTEK--------NSVTWVAMIAGYGKCGEVREAKKVFDEISE--PDASCWA 214 (490)
Q Consensus 146 ~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~ 214 (490)
|| ...|-..|....+.++.++|.++.++++.. -...|.++++.-...|.-+...++|+++.+ .....|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 54 456888889999999999999999999853 334788888888888888999999999987 4456788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHhc
Q 011249 215 AMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCD-RTNYVSNALIHMHSKC 293 (490)
Q Consensus 215 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 293 (490)
.|...|.+.+++++|.++|+.|.+.- .-....|...+..+.+..+-+.|..++.++.+.-.. -......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 99999999999999999999999752 246678888999999999999999999998876422 1344555667777889
Q ss_pred CChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH--HHHHHHHHhcCCCChHHH
Q 011249 294 GYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQV--TFIGVLTACSHGGLVEDG 365 (490)
Q Consensus 294 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a 365 (490)
|+.+.+..+|+.... +....|+..++.-.++|+.+.+..+|++....++.|... .|...+..--+.|+-+.+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 999999999998876 356789999999999999999999999999988887543 555555544444554433
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.69 E-value=2.3e-07 Score=72.92 Aligned_cols=90 Identities=17% Similarity=0.137 Sum_probs=42.5
Q ss_pred HHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 011249 387 CMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKW 464 (490)
Q Consensus 387 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 464 (490)
.++..+...|++++|.+.++.+. .+.+...+..+...+...|+++.|...++++.+.+|+++..+..++.++...|++
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCH
Confidence 34444444444444444444433 2223344444444444445555555555555455555455555555555555555
Q ss_pred chHHHHHHHhhh
Q 011249 465 KDSEIVKMMISE 476 (490)
Q Consensus 465 ~~A~~~~~~~~~ 476 (490)
++|...+++..+
T Consensus 102 ~~A~~~~~~al~ 113 (135)
T TIGR02552 102 ESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHH
Confidence 555555544444
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.69 E-value=7.4e-06 Score=82.06 Aligned_cols=238 Identities=11% Similarity=0.011 Sum_probs=143.2
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHH
Q 011249 178 NSVTWVAMIAGYGKCGEVREAKKVFDEISE--P-DASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISA 254 (490)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 254 (490)
+...+..|+..+...+++++|.++.+...+ | ....|..+...+.+.++.+.+..+ . ++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--N---------------LIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--h---------------hhhh
Confidence 445666777777777777777777765544 2 223344444456666664444333 1 2222
Q ss_pred HhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHH
Q 011249 255 CTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEAL 331 (490)
Q Consensus 255 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 331 (490)
.....++.....++..+.+. ..+...+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.++|.
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 22333333333344444442 23334556677777777777777777777765 3566777777777777 777777
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCC
Q 011249 332 DMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDF 411 (490)
Q Consensus 332 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 411 (490)
.++.+.+.. +...+++..+..+|.++.. ..+.+...+..+.+.....-. ..
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~------------~~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHRE------------FT 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhc------------cc
Confidence 777776653 4445567777777777765 333344433333322221111 11
Q ss_pred CChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcch
Q 011249 412 CDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKD 466 (490)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 466 (490)
.-..++..+-..|...++++++..+++.+++.+|.|..+...++.+|. ++|.+
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 223344445566777889999999999999999999999999988877 44444
No 128
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.69 E-value=7.2e-07 Score=69.08 Aligned_cols=98 Identities=11% Similarity=-0.029 Sum_probs=86.7
Q ss_pred CchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 011249 381 LTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIY 458 (490)
Q Consensus 381 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 458 (490)
+......+..-+...|++++|.++|+.+. .+.+...|..|.-+|...|++++|+..|.++..++|++|.++..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34445566777789999999999998876 5567788999999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHHhhhcc
Q 011249 459 ASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 459 ~~~g~~~~A~~~~~~~~~~~ 478 (490)
...|+.+.|.+.|+......
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999887654
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=1.4e-05 Score=72.53 Aligned_cols=140 Identities=16% Similarity=0.141 Sum_probs=95.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC-chHHHHHHHHHhh
Q 011249 317 MITAFADHGKSQEALDMFLKMRNEGIEPNQV-TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL-TEHLTCMVDLLGR 394 (490)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 394 (490)
....+...|++++|+..++.++.. .|+.. ........+...++..+|.+.++++... .|+ ......+..+|.+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~ 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHh
Confidence 333455677888888888887774 55444 4445556677888888888888888762 333 5555667788888
Q ss_pred cCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHH
Q 011249 395 SGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKM 472 (490)
Q Consensus 395 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 472 (490)
.|++.+|+.+++... .+.++..|..|..+|...|+..++..... ..|.-.|+|++|...+.
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLM 449 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHH
Confidence 888888888887665 55577788888888888887777666433 45555666666666666
Q ss_pred Hhhhcc
Q 011249 473 MISETE 478 (490)
Q Consensus 473 ~~~~~~ 478 (490)
...+..
T Consensus 450 ~A~~~~ 455 (484)
T COG4783 450 RASQQV 455 (484)
T ss_pred HHHHhc
Confidence 655543
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=2.4e-05 Score=65.27 Aligned_cols=243 Identities=14% Similarity=0.128 Sum_probs=155.8
Q ss_pred HHhCCChHHHHHHHHHhccC--CchhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHH-HHH
Q 011249 158 YANCGNMKAAKEFYDRMTEK--NSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIE-MYK 234 (490)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~ 234 (490)
+.-.|++..++..-...... +...-.-+.++|...|.+.....-...-..+.......+......-++-+.-+. +.+
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E 97 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYE 97 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHH
Confidence 34455665555544443322 333344455667777766555444443333555555555555554555444333 444
Q ss_pred HHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC-CChhH
Q 011249 235 VMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN-KDVIS 313 (490)
Q Consensus 235 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~ 313 (490)
.+......-+......-...|...|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+ .+..+
T Consensus 98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t 171 (299)
T KOG3081|consen 98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT 171 (299)
T ss_pred HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH
Confidence 44444334343444444456888899999988876621 222233335566777888999999999988 45566
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHH
Q 011249 314 YSSMITAFAD----HGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMV 389 (490)
Q Consensus 314 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 389 (490)
.+-|.+++.+ .+....|.-+|++|-+. ..|+..+.+....++...|++++|..+++.... ....++.+...++
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--kd~~dpetL~Nli 248 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--KDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--ccCCCHHHHHHHH
Confidence 6667776654 35688999999999875 688899999999999999999999999999988 4555677777777
Q ss_pred HHHhhcCChHHHH-HHHHhcc
Q 011249 390 DLLGRSGQLEKAH-SLIMDYK 409 (490)
Q Consensus 390 ~~~~~~g~~~~A~-~~~~~~~ 409 (490)
.+-...|...++. +.+.++.
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHH
Confidence 7777777665554 4555555
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=2.9e-06 Score=70.08 Aligned_cols=196 Identities=13% Similarity=0.080 Sum_probs=130.5
Q ss_pred ccCChHHHHHHHHHHHh---cC-CCCchh-HHHHHHHHHHhcCChHHHHHHHhcccC--CCh-hHHHHHHHHHHhcCChH
Q 011249 257 QLGDVEMAAILAKHVDE---GC-CDRTNY-VSNALIHMHSKCGYLDLAWREFSRIKN--KDV-ISYSSMITAFADHGKSQ 328 (490)
Q Consensus 257 ~~g~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~ 328 (490)
...+.++..+++.++.. .| ..++.. +|..++-+....|+.+.|...++.+.. |+. .+-..-.-.+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 45677888888877743 23 344443 344555566677888888888877665 221 11111122344567888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhc
Q 011249 329 EALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDY 408 (490)
Q Consensus 329 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 408 (490)
+|+++++.+.+.. +.|..++..-+...-..|+.-+|++-+....+ .+..|.+.|..+...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 8888888888763 33455666555566667777788888888777 57778888888888888888888888888877
Q ss_pred c-CCC-ChhhHHHHHHHHhhhC---ChHHHHHHHHHHHhcCCCCCchHHHHH
Q 011249 409 K-DFC-DAGTWGALLGACKVHV---NAELGEIAARHLLELGPEKTGNSALLA 455 (490)
Q Consensus 409 ~-~~~-~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~l~ 455 (490)
. ..| ++..+..+...+.-.| +.+.+.++|.+++++.|.+...+..+.
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 6 344 5556666666554433 667788888888888886555554443
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.55 E-value=0.0001 Score=74.07 Aligned_cols=166 Identities=7% Similarity=-0.009 Sum_probs=114.3
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHhccC---CchhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhc
Q 011249 147 NVISWSAMVAGYANCGNMKAAKEFYDRMTEK---NSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQN 223 (490)
Q Consensus 147 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 223 (490)
+...+..|+..+...+++++|.++.+...+. ....|-.++..+.+.++.+++.-+ .++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 5667888888888899999999998877653 334455555566677765554433 344444455
Q ss_pred CChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 011249 224 GYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREF 303 (490)
Q Consensus 224 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 303 (490)
.++.-...++..|...+ -+...+..+..+|.+.|+.+++..+|+++.+.. +.++.+.|.+...|... ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 55544444555555432 234467778888888888888888888888887 77788888888888888 888888877
Q ss_pred hcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011249 304 SRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNE 340 (490)
Q Consensus 304 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (490)
.+... .+...+++..+.++|.++...
T Consensus 173 ~KAV~-----------~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 173 KKAIY-----------RFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHH-----------HHHhhhcchHHHHHHHHHHhc
Confidence 76443 355566777777777777763
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=4e-05 Score=63.55 Aligned_cols=197 Identities=12% Similarity=0.071 Sum_probs=142.5
Q ss_pred cCChHHHHHHHHHHHH---cC-cccChh-hHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChH
Q 011249 223 NGYAKAAIEMYKVMRQ---EN-VRISEV-AMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLD 297 (490)
Q Consensus 223 ~g~~~~A~~~~~~~~~---~~-~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 297 (490)
..+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++++...- |.+..+-..-.-.+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 4568899999988874 34 455554 34455566778899999999999987775 555555444445566789999
Q ss_pred HHHHHHhcccCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 011249 298 LAWREFSRIKNK---DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTR 374 (490)
Q Consensus 298 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 374 (490)
+|+++++.+.+. |..++..-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999998874 4456666666777788888998888888775 667889999999999999999999999999975
Q ss_pred HcCCCCCchHHHHHHHHHhhcC---ChHHHHHHHHhccCCCChhhHHHHHHHH
Q 011249 375 VFGIKPLTEHLTCMVDLLGRSG---QLEKAHSLIMDYKDFCDAGTWGALLGAC 424 (490)
Q Consensus 375 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 424 (490)
..|.++..+..+.+.+.-.| +.+-|.++|.+.. +.++.....+...|
T Consensus 183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al-kl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL-KLNPKNLRALFGIY 232 (289)
T ss_pred --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhChHhHHHHHHHH
Confidence 44445556667776655444 5677888887766 33333344444333
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.51 E-value=2.4e-06 Score=78.25 Aligned_cols=124 Identities=14% Similarity=0.065 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHH
Q 011249 347 VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGAC 424 (490)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 424 (490)
.....++..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++.+.. .+.+...+......|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34556667777788999999999999874 243 55568888888888899999987766 233556666667778
Q ss_pred hhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhh
Q 011249 425 KVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMIS 475 (490)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (490)
...++++.|+.+.+++.+..|++...|..|+.+|.+.|++++|+-.++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 899999999999999999999999999999999999999999999999875
No 135
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.50 E-value=0.0016 Score=63.94 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhCCh---HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccccC
Q 011249 417 WGALLGACKVHVNA---ELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKS 482 (490)
Q Consensus 417 ~~~l~~~~~~~g~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 482 (490)
.+.++..|.+.+|. -+|+-+++......|.|+..-..|+.+|.-.|-...|.++++.+.-+.+..+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 35666777777664 4677777777888888888888888888888888888888887765555443
No 136
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.49 E-value=0.001 Score=61.46 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 011249 312 ISYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVD 390 (490)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 390 (490)
.+|-..+..-.+..-...|..+|.++.+.+..+ +.....+++..++ .++.+-|.++|+.-.+. +..++......++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHH
Confidence 356666666667777888888888888877666 5556777777665 47778888888887774 3344445566777
Q ss_pred HHhhcCChHHHHHHHHhccCC---C--ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCC----chHHHHHHHHHhc
Q 011249 391 LLGRSGQLEKAHSLIMDYKDF---C--DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKT----GNSALLANIYASM 461 (490)
Q Consensus 391 ~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~ 461 (490)
-+...++-..|..+|++.... + ...+|..++.--..-||...+.++-++.....|.+. ..-..+..-|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 778888888888888877622 2 346888888877888888888888777776555221 1223344455555
Q ss_pred CCcchHH
Q 011249 462 GKWKDSE 468 (490)
Q Consensus 462 g~~~~A~ 468 (490)
+.+.--.
T Consensus 524 d~~~c~~ 530 (656)
T KOG1914|consen 524 DLYPCSL 530 (656)
T ss_pred ccccccH
Confidence 5544333
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.48 E-value=4.1e-06 Score=65.74 Aligned_cols=115 Identities=12% Similarity=-0.007 Sum_probs=91.2
Q ss_pred HHHHHHHcCCCCcH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--
Q 011249 333 MFLKMRNEGIEPNQ-VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-- 409 (490)
Q Consensus 333 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 409 (490)
.++++.. ..|+. .....+...+...|++++|...++.+.. ..+.+...+..+..++...|++++|..++++..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 35543 4556667778889999999999999877 345577888889999999999999999998775
Q ss_pred CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchH
Q 011249 410 DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNS 451 (490)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 451 (490)
.+.+...+..+...+...|++++|...++++++.+|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 445667888888889999999999999999999999876643
No 138
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=2.2e-07 Score=52.15 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=15.1
Q ss_pred CCCCCchHHHHHHHHHhhcCChHHHHHHHHhc
Q 011249 377 GIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDY 408 (490)
Q Consensus 377 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 408 (490)
|++||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 139
>PF12854 PPR_1: PPR repeat
Probab=98.41 E-value=4.8e-07 Score=50.73 Aligned_cols=34 Identities=26% Similarity=0.535 Sum_probs=30.5
Q ss_pred cCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 011249 340 EGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMT 373 (490)
Q Consensus 340 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 373 (490)
.|+.||..||+.+|.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999873
No 140
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.37 E-value=0.0018 Score=58.75 Aligned_cols=444 Identities=9% Similarity=0.080 Sum_probs=222.3
Q ss_pred chhhhhhchhhHHHHHHHHhhhcCCC-Cc------hhHhHHHHHHHHHhcCCCCHHHHHHHhccCCCCCCceehHHHHHH
Q 011249 5 YLVPRSKTFNQLKQVHSYLLKTLTKP-HD------QYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLWTSLIRN 77 (490)
Q Consensus 5 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~ 77 (490)
.+++..++...++.++.++.+ .- .+ .+ .-+.++++|-.++ .+.-...+....+......|-.|..+
T Consensus 14 f~Lqkq~~~~esEkifskI~~---e~~~~~f~lkeEv--l~grilnAffl~n--ld~Me~~l~~l~~~~~~s~~l~LF~~ 86 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYD---EKESSPFLLKEEV--LGGRILNAFFLNN--LDLMEKQLMELRQQFGKSAYLPLFKA 86 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHH---HhhcchHHHHHHH--HhhHHHHHHHHhh--HHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 356677788889999888887 43 33 33 4567888887775 45555555544432222667777665
Q ss_pred H--HhcCChhHHHHHHHHHHhc--CCCCCHh--hHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC------
Q 011249 78 H--VLHAHFRQSILLYAKMHRL--GVLTSGF--TFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE------ 145 (490)
Q Consensus 78 ~--~~~g~~~~A~~~~~~m~~~--g~~p~~~--~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------ 145 (490)
+ -+.+.+.+|++.+...... +..|.-. .+..++.-+ -..+..+..+...|++++++.+++++..
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df----~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE 162 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDF----FLDEIEAHSLIETGRFSEGRAILNRIIERLLKRE 162 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHH----HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhh
Confidence 4 4678999999999888765 3333211 111111110 0113445567788888888888887764
Q ss_pred --CCHhHHHHHHHHHHhCCChHHHHHHHHHhccC---Cc-hhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHH
Q 011249 146 --RNVISWSAMVAGYANCGNMKAAKEFYDRMTEK---NS-VTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVC 219 (490)
Q Consensus 146 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 219 (490)
-+..+|+.++-.+.+ ..|-++.+. |. ..|-.++-.|.+.=..-++. -+++. .|.......++..
T Consensus 163 ~~w~~d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~-~Y~k~-~peeeL~s~imqh 232 (549)
T PF07079_consen 163 CEWNSDMYDRAVLMLSR--------SYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQR-PYEKF-IPEEELFSTIMQH 232 (549)
T ss_pred hcccHHHHHHHHHHHhH--------HHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhc-hHHhh-CcHHHHHHHHHHH
Confidence 267777776655543 222222211 11 11222222222211000000 00000 0222222222222
Q ss_pred HHhc--CChHHHHHHHHHHHHcCcccChh-hHHHHHHHHhccCChHHHHHHHHHHHhcCCC----CchhHHHHHHHHHHh
Q 011249 220 YVQN--GYAKAAIEMYKVMRQENVRISEV-AMVGAISACTQLGDVEMAAILAKHVDEGCCD----RTNYVSNALIHMHSK 292 (490)
Q Consensus 220 ~~~~--g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~ 292 (490)
..-. .+..--+++++.-.+.-+.|+.. ....+...+.+ +.+++..+-+.+....+. .-...+..++....+
T Consensus 233 lfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 233 LFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 11122223333333333344322 12222222222 333443333333222111 112345555666666
Q ss_pred cCChHHHHHHHhcccC--CChhHH-------HHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHH-HHHHHHH---H
Q 011249 293 CGYLDLAWREFSRIKN--KDVISY-------SSMITAFAD----HGKSQEALDMFLKMRNEGIEPNQV-TFIGVLT---A 355 (490)
Q Consensus 293 ~~~~~~A~~~~~~~~~--~~~~~~-------~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~---~ 355 (490)
.++...|.+.+.-+.- |+...- ..+-+..+. .-+...-+.+|+..... ..|.. ....++. -
T Consensus 311 ~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~--DiDrqQLvh~L~~~Ak~ 388 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY--DIDRQQLVHYLVFGAKH 388 (549)
T ss_pred HHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh--cccHHHHHHHHHHHHHH
Confidence 6666666665554332 222111 111111221 11233345566665553 22332 2222332 2
Q ss_pred hcCCCC-hHHHHHHHHHHHHHcCCCCCchHHHHHH----HHHhhc---CChHHHHH---HHHhccCCC----ChhhHHHH
Q 011249 356 CSHGGL-VEDGCKQFELMTRVFGIKPLTEHLTCMV----DLLGRS---GQLEKAHS---LIMDYKDFC----DAGTWGAL 420 (490)
Q Consensus 356 ~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~~A~~---~~~~~~~~~----~~~~~~~l 420 (490)
+-+.|. -++|+++++.+.+ -.+-|..+-+.+. ..|... ..+.+-.. .+++...+| +...-|.|
T Consensus 389 lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 444555 7888899888876 2333333333222 222221 11222221 222222222 34455666
Q ss_pred HHH--HhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 421 LGA--CKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 421 ~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
..+ +...|++.++.-.-..+.+..| ++.+|..+|-++....+|++|+.++.++..
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 654 4679999999999999999999 799999999999999999999999987654
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.34 E-value=0.0039 Score=61.37 Aligned_cols=399 Identities=10% Similarity=0.069 Sum_probs=212.7
Q ss_pred HhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHH
Q 011249 45 LQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEA 122 (490)
Q Consensus 45 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 122 (490)
..+.|+ .++|..+++... .++...+...+-.+|...++.++|..+|++.... .|+......++.+
T Consensus 53 l~r~gk-~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFma---------- 119 (932)
T KOG2053|consen 53 LFRLGK-GDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMA---------- 119 (932)
T ss_pred HHHhcC-chhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHH----------
Confidence 357788 888988888775 3333377888888899999999999999988775 6666555555554
Q ss_pred HHHHHHhcCCH----HHHHHHHhhcCCCCHhHHHHHHHHHHhC-CCh---------HHHHHHHHHhccCC-----chhHH
Q 011249 123 VICGYTKIGLM----DDAQRLFDSMAERNVISWSAMVAGYANC-GNM---------KAAKEFYDRMTEKN-----SVTWV 183 (490)
Q Consensus 123 l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~---------~~a~~~~~~~~~~~-----~~~~~ 183 (490)
|.|.+.+ ..|.++++..++.--..|+ +++...+. ... .-|.+.++++.+.+ ..-..
T Consensus 120 ----yvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~ 194 (932)
T KOG2053|consen 120 ----YVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII 194 (932)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH
Confidence 4555444 4466777755443333444 44443332 122 23455555555443 11112
Q ss_pred HHHHHHHhcCChhHHHHHHhhc-----CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHH---
Q 011249 184 AMIAGYGKCGEVREAKKVFDEI-----SEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISAC--- 255 (490)
Q Consensus 184 ~l~~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--- 255 (490)
.-...+...|++++|..++..- ...+...-+.-+..+...++|.+..++-.++...|. |. |...+.+.
T Consensus 195 Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~sv~kl 270 (932)
T KOG2053|consen 195 LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN--DD--YKIYTDSVFKL 270 (932)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC--cc--hHHHHHHHHHH
Confidence 2233445678899999988332 224445556677888889999999999999888753 32 22222211
Q ss_pred -------------hccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH---hcCChHHHHHHH-hcccC-----CCh--
Q 011249 256 -------------TQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHS---KCGYLDLAWREF-SRIKN-----KDV-- 311 (490)
Q Consensus 256 -------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~-~~~~~-----~~~-- 311 (490)
...+..+...+...+..... ....|-+-+.++. .-|+.+++...| ++.-. .|.
T Consensus 271 Le~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~ 347 (932)
T KOG2053|consen 271 LELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNH 347 (932)
T ss_pred HHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHH
Confidence 11222333333333332221 1222333333333 457888875444 33321 011
Q ss_pred -------hHHHHHHHHHH------------------------hcC-----ChHHHHHHHHHHH---HcC------CCCcH
Q 011249 312 -------ISYSSMITAFA------------------------DHG-----KSQEALDMFLKMR---NEG------IEPNQ 346 (490)
Q Consensus 312 -------~~~~~l~~~~~------------------------~~~-----~~~~a~~~~~~~~---~~~------~~p~~ 346 (490)
.....++..+. ..| ..+....++++.. +.| .-|+.
T Consensus 348 yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE 427 (932)
T KOG2053|consen 348 YLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTE 427 (932)
T ss_pred hhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccc
Confidence 11111222221 122 1223333333322 223 22332
Q ss_pred H---------HHHHHHHHhcCCCChH---HHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCC-CC
Q 011249 347 V---------TFIGVLTACSHGGLVE---DGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDF-CD 413 (490)
Q Consensus 347 ~---------~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~ 413 (490)
. +.+.++..|.+.++.. +|+-+++.... .-+.+..+-..+++.|.-.|-+..|.++|+.+.++ ..
T Consensus 428 ~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ 505 (932)
T KOG2053|consen 428 YSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQ 505 (932)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhh
Confidence 2 3456667777777765 44455555444 23334444456888999999999999999888722 12
Q ss_pred hhhHHHHH-HHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHH
Q 011249 414 AGTWGALL-GACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIV 470 (490)
Q Consensus 414 ~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (490)
..|...++ ..+...|++..+...+....+..-++-.=-..++..-++.|.+.+..++
T Consensus 506 ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em 563 (932)
T KOG2053|consen 506 TDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEM 563 (932)
T ss_pred hccchHHHHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHH
Confidence 22333333 3345567777777777776664422221112222333445555544443
No 142
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=8.1e-06 Score=69.92 Aligned_cols=112 Identities=15% Similarity=0.021 Sum_probs=96.3
Q ss_pred CCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhh---CChHHHHHHHHHHHhcCCCCCchH
Q 011249 377 GIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVH---VNAELGEIAARHLLELGPEKTGNS 451 (490)
Q Consensus 377 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~ 451 (490)
..|-|...|-.|...|...|+.+.|..-|.... .++++..+..+..++... .+..++..+++++++.+|.++...
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 456678999999999999999999999997766 566777888888776443 356899999999999999999999
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhhcccccCCCcccc
Q 011249 452 ALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSWI 488 (490)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 488 (490)
..|+..+.+.|++.+|...++.|.+.....+|+.+-|
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 9999999999999999999999999888777776544
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.33 E-value=4.8e-06 Score=60.65 Aligned_cols=95 Identities=19% Similarity=0.118 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 011249 384 HLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASM 461 (490)
Q Consensus 384 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 461 (490)
.+..++..+...|++++|...+++.. .+.+...+..+...+...|++++|.+.++++....|.++..+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 34556777888899999999888765 2334466777788888889999999999999999998888899999999999
Q ss_pred CCcchHHHHHHHhhhcc
Q 011249 462 GKWKDSEIVKMMISETE 478 (490)
Q Consensus 462 g~~~~A~~~~~~~~~~~ 478 (490)
|++++|...+++..+.+
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 99999999998876543
No 144
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.32 E-value=0.002 Score=57.21 Aligned_cols=241 Identities=20% Similarity=0.164 Sum_probs=141.0
Q ss_pred hcCChHHHHHHHHHHHHcCcccCh--hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHH
Q 011249 222 QNGYAKAAIEMYKVMRQENVRISE--VAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLA 299 (490)
Q Consensus 222 ~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 299 (490)
-.|+++.|.+-|+.|... |.. .....|.-...+.|+.+.|.++-+..-..- +.-.....+.+...+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 345555565555555531 111 111122222334555666655555554443 33344555556666666666666
Q ss_pred HHHHhcccC-----CChh--HHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHhcCCCChHHHHHH
Q 011249 300 WREFSRIKN-----KDVI--SYSSMITAFA---DHGKSQEALDMFLKMRNEGIEPNQV-TFIGVLTACSHGGLVEDGCKQ 368 (490)
Q Consensus 300 ~~~~~~~~~-----~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~ 368 (490)
+++.+.-.. +++. .-..|+.+-. -..+...|...-.+..+ +.||.. .-..-..++.+.|+..++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 666654332 2221 1111222111 12345566665555555 566655 333445678889999999999
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHH------HhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHh
Q 011249 369 FELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLI------MDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLE 442 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (490)
++.+-+ ..|.+.... +..+.+.|+. +..-+ +.|. +.+......+..+....|++..|..--+.+..
T Consensus 286 lE~aWK---~ePHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 286 LETAWK---AEPHPDIAL--LYVRARSGDT--ALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred HHHHHh---cCCChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 998865 456666542 2334455543 33322 3333 45666777788888899999999998888888
Q ss_pred cCCCCCchHHHHHHHHHhc-CCcchHHHHHHHhhhc
Q 011249 443 LGPEKTGNSALLANIYASM-GKWKDSEIVKMMISET 477 (490)
Q Consensus 443 ~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 477 (490)
..|. .++|..|+.+-... |+-.++...+-+..+.
T Consensus 358 ~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 EAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8888 67788888887655 9999998888776654
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.31 E-value=9.9e-06 Score=61.93 Aligned_cols=91 Identities=10% Similarity=0.004 Sum_probs=39.8
Q ss_pred HHHHHHhhcCChHHHHHHHHhcc-CCCC----hhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC---CchHHHHHHHH
Q 011249 387 CMVDLLGRSGQLEKAHSLIMDYK-DFCD----AGTWGALLGACKVHVNAELGEIAARHLLELGPEK---TGNSALLANIY 458 (490)
Q Consensus 387 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 458 (490)
.++..+.+.|++++|.+.|+.+. ..|+ ...+..+..++...|+++.|...++++....|++ +.++..++.++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 33444444444444444444443 1111 1233334444444455555555555544444442 23344444444
Q ss_pred HhcCCcchHHHHHHHhhhc
Q 011249 459 ASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 459 ~~~g~~~~A~~~~~~~~~~ 477 (490)
.+.|++++|...++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 4555555555555444443
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.31 E-value=1.3e-06 Score=59.19 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=59.9
Q ss_pred ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-CcchHHHHHHHhhhcc
Q 011249 413 DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMG-KWKDSEIVKMMISETE 478 (490)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 478 (490)
++.+|..+...+...|++++|+..|+++++.+|+++.++..++.++.+.| ++++|++.+++..+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45678888999999999999999999999999999999999999999999 7999999999887653
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.8e-05 Score=70.21 Aligned_cols=276 Identities=11% Similarity=-0.008 Sum_probs=140.1
Q ss_pred HHHHHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCCh
Q 011249 185 MIAGYGKCGEVREAKKVFDEISE---PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDV 261 (490)
Q Consensus 185 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 261 (490)
....+.+..++.+|+..+....+ .+..-|..-+..+...|++++|.--.++-.+... -.+......-.++...++.
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALSDL 133 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhHHH
Confidence 34455666677777777766554 3444555566666667777776665555443211 1223445555556666666
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC-----CChhHHHHHH-HHHHhcCChHHHHHHHH
Q 011249 262 EMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN-----KDVISYSSMI-TAFADHGKSQEALDMFL 335 (490)
Q Consensus 262 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~-~~~~~~~~~~~a~~~~~ 335 (490)
.+|...++.-. .+ ....++..++.+.. |.-..|..+- .++...|++++|...--
T Consensus 134 i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 66665555211 00 01111122222211 1112222221 24445566666665555
Q ss_pred HHHHcCCCCcHHHHHHHHH--HhcCCCChHHHHHHHHHHHHHcCCCCCchHHHH-------------HHHHHhhcCChHH
Q 011249 336 KMRNEGIEPNQVTFIGVLT--ACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTC-------------MVDLLGRSGQLEK 400 (490)
Q Consensus 336 ~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~g~~~~ 400 (490)
...+. .++. .+..+++ ++...++.+.+...|++... ..|+...-.. =..-..+.|++.+
T Consensus 194 ~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 194 DILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 54442 2211 1222222 23344555666666655543 2333221111 1122345666777
Q ss_pred HHHHHHhcc------CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHh
Q 011249 401 AHSLIMDYK------DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMI 474 (490)
Q Consensus 401 A~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (490)
|.+.|.+.. ..|+...|.....+..+.|+.++|+.-.+.+++++|.-..+|..-++++...++|++|.+-+++.
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777765554 22344445555555666777777777777777777776667777777777777777777777766
Q ss_pred hhcccccCCCccc
Q 011249 475 SETEKKKSPGCSW 487 (490)
Q Consensus 475 ~~~~~~~~~~~~~ 487 (490)
.+..-...++.+|
T Consensus 348 ~q~~~s~e~r~~l 360 (486)
T KOG0550|consen 348 MQLEKDCEIRRTL 360 (486)
T ss_pred HhhccccchHHHH
Confidence 5554444444433
No 148
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=3e-05 Score=71.10 Aligned_cols=124 Identities=11% Similarity=0.022 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCC
Q 011249 282 VSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGG 360 (490)
Q Consensus 282 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 360 (490)
....|+..+...++++.|+.+|+++.+.++.....++..+...++-.+|.+++++..+. .| +...+..-...+.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 44456666777788888888888888877777777888888888888888888888864 33 4455555566678888
Q ss_pred ChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 361 LVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 361 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
+.+.|+.+.+++.. -.|.+..+|..|+.+|...|++++|+-.++.++
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88889888888886 455556788888899999999999988888877
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.28 E-value=2.4e-05 Score=62.02 Aligned_cols=84 Identities=12% Similarity=0.061 Sum_probs=37.2
Q ss_pred HHHHhhcCChHHHHHHHHhcc-CCCCh----hhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 011249 389 VDLLGRSGQLEKAHSLIMDYK-DFCDA----GTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGK 463 (490)
Q Consensus 389 ~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 463 (490)
...+...|++++|...|+.+. ..|++ .....+...+...|++++|+..++.. ...+-.+..+..++.+|.+.|+
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC
Confidence 344444455555555544444 11121 12223344444555555555555432 1122233444455555555555
Q ss_pred cchHHHHHHH
Q 011249 464 WKDSEIVKMM 473 (490)
Q Consensus 464 ~~~A~~~~~~ 473 (490)
+++|...|++
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.26 E-value=3.7e-06 Score=77.37 Aligned_cols=108 Identities=10% Similarity=-0.071 Sum_probs=91.3
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCC
Q 011249 352 VLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVN 429 (490)
Q Consensus 352 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 429 (490)
-...+...|++++|+..|+++.+ ..+.+...|..+..+|...|++++|+..++++. .+.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34556788999999999999987 445567788888999999999999999998886 44567788889999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 011249 430 AELGEIAARHLLELGPEKTGNSALLANIYASM 461 (490)
Q Consensus 430 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 461 (490)
+++|+..|+++++++|+++.+...+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998888877665444
No 151
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.25 E-value=1.9e-06 Score=49.23 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=32.9
Q ss_pred eehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 011249 69 FLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSG 103 (490)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 103 (490)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.25 E-value=8.1e-07 Score=62.90 Aligned_cols=78 Identities=17% Similarity=0.067 Sum_probs=51.0
Q ss_pred cCChHHHHHHHHhcc-CCC---ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHH
Q 011249 395 SGQLEKAHSLIMDYK-DFC---DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIV 470 (490)
Q Consensus 395 ~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (490)
.|++++|+.+++++. ..| +...+..+..++.+.|++++|.+++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 466677777776665 122 334455567777777777777777777 666666666666677777777777777777
Q ss_pred HHH
Q 011249 471 KMM 473 (490)
Q Consensus 471 ~~~ 473 (490)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.24 E-value=8.5e-05 Score=58.89 Aligned_cols=126 Identities=13% Similarity=0.089 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC--chHHHH
Q 011249 313 SYSSMITAFADHGKSQEALDMFLKMRNEGIEPN---QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL--TEHLTC 387 (490)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~ 387 (490)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+... ...|. ......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 344455544 4778888888888888752 222 123344556678888999999999888874 32222 223345
Q ss_pred HHHHHhhcCChHHHHHHHHhccCC-CChhhHHHHHHHHhhhCChHHHHHHHHHHH
Q 011249 388 MVDLLGRSGQLEKAHSLIMDYKDF-CDAGTWGALLGACKVHVNAELGEIAARHLL 441 (490)
Q Consensus 388 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (490)
+...+...|++++|+..++..... ..+..+......+...|++++|...|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 677888889999999888776522 344566667778888899999998888763
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.23 E-value=2.4e-06 Score=57.07 Aligned_cols=60 Identities=17% Similarity=0.120 Sum_probs=50.2
Q ss_pred HHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 420 LLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
+...+...|++++|+..|+++++..|+++.++..++.++...|++++|...++++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456678888999999999999999999899999999999999999999999988876544
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.22 E-value=0.00046 Score=61.63 Aligned_cols=214 Identities=16% Similarity=0.164 Sum_probs=116.6
Q ss_pred ehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH--hhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 011249 70 LWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSG--FTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERN 147 (490)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 147 (490)
.|......|-..|++++|.+.|.+..+.....+. ..-..+.. ... +.+.+++++|...+++
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~-----------Aa~-~~k~~~~~~Ai~~~~~----- 99 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEE-----------AAN-CYKKGDPDEAIECYEK----- 99 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHH-----------HHH-HHHHTTHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHH-----------HHH-HHHhhCHHHHHHHHHH-----
Confidence 3444556666777777777777765432111000 00011111 011 1222355555554443
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhc-CChhHHHHHHhhcCC-----C----CHHhHHHHH
Q 011249 148 VISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKC-GEVREAKKVFDEISE-----P----DASCWAAMT 217 (490)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~-----~----~~~~~~~l~ 217 (490)
.+..|...|++..|-+++.+ +...|... |++++|++.|++..+ . -...+..++
T Consensus 100 ------A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A 162 (282)
T PF14938_consen 100 ------AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA 162 (282)
T ss_dssp ------HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ------HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 45667777777777666654 45666666 777777777766543 1 123566778
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCcc-----cChh-hHHHHHHHHhccCChHHHHHHHHHHHhcC--CCCc--hhHHHHHH
Q 011249 218 VCYVQNGYAKAAIEMYKVMRQENVR-----ISEV-AMVGAISACTQLGDVEMAAILAKHVDEGC--CDRT--NYVSNALI 287 (490)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~ 287 (490)
..+.+.|++++|+++|++....... .+.. .+...+-++...||...|...++...... +..+ ..+...|+
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 8889999999999999988764322 2222 23334446667788999999888887553 2222 33455566
Q ss_pred HHHHh--cCChHHHHHHHhcccCCChhHHHHH
Q 011249 288 HMHSK--CGYLDLAWREFSRIKNKDVISYSSM 317 (490)
Q Consensus 288 ~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~l 317 (490)
.++-. ...++.+..-|+.+.+-|..--..|
T Consensus 243 ~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 243 EAYEEGDVEAFTEAVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp HHHHTT-CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHcccCccHHHHHHHH
Confidence 66654 2456777777777776555433333
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.19 E-value=3.3e-05 Score=58.96 Aligned_cols=106 Identities=8% Similarity=0.063 Sum_probs=72.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCC-CchHHHHHHHHHhhcCChHHHHHHHHhcc-CCCC----hhhHHHHH
Q 011249 348 TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKP-LTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCD----AGTWGALL 421 (490)
Q Consensus 348 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 421 (490)
++..++..+...|++++|.+.+..+...+.-.+ ....+..+..++.+.|++++|...|+.+. ..|+ +..+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445556666777888888888887776421111 13455567778888888888888887765 2232 34566777
Q ss_pred HHHhhhCChHHHHHHHHHHHhcCCCCCchHHH
Q 011249 422 GACKVHVNAELGEIAARHLLELGPEKTGNSAL 453 (490)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 453 (490)
.++...|+.++|...++++.+..|+++.....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 77888888889999998888888887665443
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=1.5e-05 Score=67.81 Aligned_cols=107 Identities=12% Similarity=-0.053 Sum_probs=62.0
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCC-ChhhHHHHHHHHhhhCChHHH
Q 011249 356 CSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFC-DAGTWGALLGACKVHVNAELG 433 (490)
Q Consensus 356 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a 433 (490)
..+.+++++|+..|.++++ -.+-|...|..-..+|.+.|.++.|++-.+... ..| ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3445666666666666654 233344445555566666666666666655544 222 344666666666666666666
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 011249 434 EIAARHLLELGPEKTGNSALLANIYASMGKW 464 (490)
Q Consensus 434 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 464 (490)
++.|+++++++|++......|-.+-.+.+..
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 6666666666666665555555554444433
No 158
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=3.3e-06 Score=47.79 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=31.8
Q ss_pred eehHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 011249 69 FLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLT 101 (490)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 101 (490)
.+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999988
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.16 E-value=3.6e-05 Score=70.93 Aligned_cols=101 Identities=9% Similarity=-0.019 Sum_probs=79.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhc
Q 011249 317 MITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRS 395 (490)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 395 (490)
....+...|++++|+..|+++++. .| +...+..+..+|...|++++|+..++++.. -.+.+...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHh
Confidence 345667789999999999999985 44 456778888889999999999999999987 3445677888889999999
Q ss_pred CChHHHHHHHHhcc-CCCChhhHHHHH
Q 011249 396 GQLEKAHSLIMDYK-DFCDAGTWGALL 421 (490)
Q Consensus 396 g~~~~A~~~~~~~~-~~~~~~~~~~l~ 421 (490)
|++++|...|++.. ..|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999998876 445544444443
No 160
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.011 Score=57.17 Aligned_cols=353 Identities=10% Similarity=0.055 Sum_probs=201.4
Q ss_pred HHhcCChhHHHHHHHHH--------HhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCCC--
Q 011249 78 HVLHAHFRQSILLYAKM--------HRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERN-- 147 (490)
Q Consensus 78 ~~~~g~~~~A~~~~~~m--------~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 147 (490)
+.+.-++++-..+.+.. ..-|++.+..-|..+=. ..++.-+...+.+..|+++-+.+..|.
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~---------~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~ 469 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSE---------EVVIDRLVDRHLYSVAIQVAKLLNLPESQ 469 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhch---------hhhhHHHHhcchhHHHHHHHHHhCCcccc
Confidence 33444556555555443 33466666666655533 336667888899999999999988775
Q ss_pred -HhHHHHHHHHHHhCCC---hHHHHHHHHHhcc--CCchhHHHHHHHHHhcCChhHHHHHHhhcCC--------CCHHhH
Q 011249 148 -VISWSAMVAGYANCGN---MKAAKEFYDRMTE--KNSVTWVAMIAGYGKCGEVREAKKVFDEISE--------PDASCW 213 (490)
Q Consensus 148 -~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~ 213 (490)
...|.....-+.+..+ .+-+..+-+++.. -...+|..++......|+.+-|..+++.=.. -+..-+
T Consensus 470 ~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~ 549 (829)
T KOG2280|consen 470 GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDS 549 (829)
T ss_pred ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchH
Confidence 5667777777776632 2333334444444 3667888899888899999999999876443 122233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc
Q 011249 214 AAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKC 293 (490)
Q Consensus 214 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 293 (490)
..-+.-..+.|+.+....++-.+.+.- +...|...+ .+...|..+|.+..+..-.. .+-+.|-.
T Consensus 550 ~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~l------~~~p~a~~lY~~~~r~~~~~------~l~d~y~q- 613 (829)
T KOG2280|consen 550 SLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMTL------RNQPLALSLYRQFMRHQDRA------TLYDFYNQ- 613 (829)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHHH------HhchhhhHHHHHHHHhhchh------hhhhhhhc-
Confidence 444555666777777766666665421 111222211 23445556665554421111 01111111
Q ss_pred CChHHHHHHHh--cc-----cCCChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHH-cCCCCcHHHHHHHHHH
Q 011249 294 GYLDLAWREFS--RI-----KNKDVISYSSMITAFADHGK----------SQEALDMFLKMRN-EGIEPNQVTFIGVLTA 355 (490)
Q Consensus 294 ~~~~~A~~~~~--~~-----~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~ 355 (490)
++-.++...|. .. .++-.........++.+... ..+-+++.+.+.. .|......+.+--+.-
T Consensus 614 ~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~ 693 (829)
T KOG2280|consen 614 DDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTT 693 (829)
T ss_pred ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHH
Confidence 11111111111 10 01111122223333333322 1122223333322 2323333344555555
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHH
Q 011249 356 CSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEI 435 (490)
Q Consensus 356 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (490)
+...|+..+|.++-.+.+ -||-..|..-+.+++..+++++-+++-+... .+..|.-...+|.+.|+.++|.+
T Consensus 694 li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 694 LILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred HHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhh
Confidence 666788888877766653 3677788778888899999988888777665 36677778888999999998888
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHH
Q 011249 436 AARHLLELGPEKTGNSALLANIYASMGKWKDSEIVK 471 (490)
Q Consensus 436 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (490)
++-+... +...+.+|.+.|++.+|.+.-
T Consensus 766 Yiprv~~--------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 766 YIPRVGG--------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hhhccCC--------hHHHHHHHHHhccHHHHHHHH
Confidence 7765432 225667777778877777654
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=1.1e-05 Score=68.66 Aligned_cols=91 Identities=14% Similarity=0.083 Sum_probs=80.9
Q ss_pred HHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchH
Q 011249 390 DLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDS 467 (490)
Q Consensus 390 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 467 (490)
.-+.+.+++++|+..|.+.. .+.|+..|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 34567899999999998877 4557778888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccc
Q 011249 468 EIVKMMISETEKK 480 (490)
Q Consensus 468 ~~~~~~~~~~~~~ 480 (490)
++.|++..+..+.
T Consensus 169 ~~aykKaLeldP~ 181 (304)
T KOG0553|consen 169 IEAYKKALELDPD 181 (304)
T ss_pred HHHHHhhhccCCC
Confidence 9999988766543
No 162
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=8.4e-06 Score=46.45 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCcccCh
Q 011249 212 CWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISE 245 (490)
Q Consensus 212 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 245 (490)
+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999988873
No 163
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.05 E-value=6.7e-06 Score=55.48 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=43.5
Q ss_pred hhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 425 KVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
...|++++|++.|+++.+.+|+++.++..++.+|.+.|++++|.++++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3567888888888888888888888888888888888888888888887776544
No 164
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=0.014 Score=56.07 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=35.2
Q ss_pred CCHHHHHHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccC-----CchhHHHHHHHHHhcCChhHHHHHHhh
Q 011249 131 GLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEK-----NSVTWVAMIAGYGKCGEVREAKKVFDE 204 (490)
Q Consensus 131 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~ 204 (490)
|++++|++++-++.++|. .+....+.|++-.+.++++.--.. -...|+.+...+.....|++|.+.|..
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666655555443 234444555555555555442211 123455555555555555555555544
No 165
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.04 E-value=9.8e-06 Score=45.80 Aligned_cols=33 Identities=18% Similarity=0.415 Sum_probs=27.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCccc
Q 011249 211 SCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRI 243 (490)
Q Consensus 211 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 243 (490)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
No 166
>PRK15331 chaperone protein SicA; Provisional
Probab=98.03 E-value=4.3e-05 Score=59.67 Aligned_cols=89 Identities=12% Similarity=0.046 Sum_probs=71.2
Q ss_pred HHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcc
Q 011249 388 MVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWK 465 (490)
Q Consensus 388 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 465 (490)
...-+...|++++|..+|+-+. .+-++..|..|..++-..+++++|+..|..+..++++||..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3444567788888888887665 45567777788888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHhhh
Q 011249 466 DSEIVKMMISE 476 (490)
Q Consensus 466 ~A~~~~~~~~~ 476 (490)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88888887665
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.01 E-value=0.00019 Score=58.78 Aligned_cols=131 Identities=11% Similarity=0.106 Sum_probs=86.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHH
Q 011249 310 DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPN--QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTC 387 (490)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 387 (490)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++.... .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344566677777778888888888888776432222 346677777788888888888888888762 3334555666
Q ss_pred HHHHHhhcCChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 011249 388 MVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGK 463 (490)
Q Consensus 388 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 463 (490)
+..++...|+...+..-++... ..+++|.++++++.+.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6777777777666554333221 23678888999988888886 4444445544443
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.01 E-value=5.4e-05 Score=62.06 Aligned_cols=95 Identities=12% Similarity=-0.070 Sum_probs=64.6
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcc-CCCC----hhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 011249 384 HLTCMVDLLGRSGQLEKAHSLIMDYK-DFCD----AGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIY 458 (490)
Q Consensus 384 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 458 (490)
.+..+...+...|++++|...|++.. ..|+ ...+..+...+...|++++|...++++++..|.++..+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 44555666666677777777766554 1111 346667777777888888888888888888888777777788787
Q ss_pred HhcCC--------------cchHHHHHHHhhhcc
Q 011249 459 ASMGK--------------WKDSEIVKMMISETE 478 (490)
Q Consensus 459 ~~~g~--------------~~~A~~~~~~~~~~~ 478 (490)
...|+ +++|.+.+++....+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 77766 456666666665543
No 169
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.01 E-value=1.9e-05 Score=52.68 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=50.7
Q ss_pred HHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCC
Q 011249 388 MVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKT 448 (490)
Q Consensus 388 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 448 (490)
+...+...|++++|.+.|+++. .+.+...+..+..++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4667889999999999998887 333667888889999999999999999999999999875
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.00 E-value=0.00031 Score=62.68 Aligned_cols=149 Identities=13% Similarity=0.062 Sum_probs=86.8
Q ss_pred ChHHHHHHHHHHHHc---CCCCcH--HHHHHHHHHhcCC-CChHHHHHHHHHHHHHcCCCCC----chHHHHHHHHHhhc
Q 011249 326 KSQEALDMFLKMRNE---GIEPNQ--VTFIGVLTACSHG-GLVEDGCKQFELMTRVFGIKPL----TEHLTCMVDLLGRS 395 (490)
Q Consensus 326 ~~~~a~~~~~~~~~~---~~~p~~--~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 395 (490)
++++|...+++..+. .-.|+. ..+..+...|... |++++|.+.|++..+-+..... ..++..++..+.+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 555555555554431 112222 2455566677777 8999999999888774322222 34456778888999
Q ss_pred CChHHHHHHHHhccC----CC----Chh-hHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHhc
Q 011249 396 GQLEKAHSLIMDYKD----FC----DAG-TWGALLGACKVHVNAELGEIAARHLLELGPEKTG-----NSALLANIYASM 461 (490)
Q Consensus 396 g~~~~A~~~~~~~~~----~~----~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~ 461 (490)
|++++|.++|+++.. .+ +.. .+...+-.+...||...|.+.+++....+|.... +...|+.++...
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 999999999987651 11 111 2233334566788999999999999988875433 444555555432
Q ss_pred --CCcchHHHHHHHh
Q 011249 462 --GKWKDSEIVKMMI 474 (490)
Q Consensus 462 --g~~~~A~~~~~~~ 474 (490)
..++++..-|+.+
T Consensus 249 D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSI 263 (282)
T ss_dssp -CCCHHHHCHHHTTS
T ss_pred CHHHHHHHHHHHccc
Confidence 2344444444444
No 171
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.99 E-value=7e-05 Score=54.27 Aligned_cols=90 Identities=17% Similarity=-0.018 Sum_probs=44.6
Q ss_pred HHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChH
Q 011249 354 TACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAE 431 (490)
Q Consensus 354 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 431 (490)
..+...|++++|...++.+.+ ..+.+...+..+..++...|++++|.+.++... .+.+..++..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 334444555555555555443 122222344444555555555555555554433 1222334555555556666666
Q ss_pred HHHHHHHHHHhcCC
Q 011249 432 LGEIAARHLLELGP 445 (490)
Q Consensus 432 ~a~~~~~~~~~~~p 445 (490)
.|...++++.+..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 66666666655544
No 172
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.96 E-value=2.3e-05 Score=53.76 Aligned_cols=58 Identities=14% Similarity=0.025 Sum_probs=48.9
Q ss_pred HHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 422 GACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
..+.+.+++++|.++++++++.+|+++..+...+.++.+.|++++|.+.+++..+.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4567788888888888888888888888888888888888888888888888877655
No 173
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.94 E-value=0.0018 Score=51.28 Aligned_cols=130 Identities=12% Similarity=0.038 Sum_probs=77.4
Q ss_pred ccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC-----CChhHHHH
Q 011249 242 RISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN-----KDVISYSS 316 (490)
Q Consensus 242 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~ 316 (490)
.|+......|..+....|+..+|...|++....-+..|......+.++....++...|...++++.+ .++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 5566666666677777777777777777766655566666666666666666666666666666554 23344455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 011249 317 MITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMT 373 (490)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 373 (490)
+...+...|.+..|+..|+..... -|+...-......+.++|+.+++..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 556666666666666666666663 4444333333333455565555544444433
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.92 E-value=0.0013 Score=52.14 Aligned_cols=130 Identities=10% Similarity=0.010 Sum_probs=78.4
Q ss_pred CCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCC---ChhhH
Q 011249 342 IEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFC---DAGTW 417 (490)
Q Consensus 342 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~ 417 (490)
..|+...-..|..+....|+..+|...|++.... -+..|......+.++....+++..|...++++- ..| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3555555555666666667777777777666652 344555666666666666677777766665554 111 23344
Q ss_pred HHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHH
Q 011249 418 GALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMM 473 (490)
Q Consensus 418 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (490)
..+...+...|.++.|+..|+.+....|+ +......+..+.++|+.+++..-+..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 45556666677777777777777776665 55555556666666766655544433
No 175
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.92 E-value=0.017 Score=52.66 Aligned_cols=135 Identities=14% Similarity=0.086 Sum_probs=104.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHH
Q 011249 310 DVISYSSMITAFADHGKSQEALDMFLKMRNEG-IEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCM 388 (490)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 388 (490)
-..+|...+..-.+....+.|..+|-+..+.| +.++...+++++..++ .|+..-|..+|+.-.. .++.++...+..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHH
Confidence 34567777887778888899999999999988 6677788888888665 5788889999988776 344444444567
Q ss_pred HHHHhhcCChHHHHHHHHhcc----CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC
Q 011249 389 VDLLGRSGQLEKAHSLIMDYK----DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEK 447 (490)
Q Consensus 389 ~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 447 (490)
+..+.+.++-+.|..+|+... ...-..+|..++.--...|+...+..+-+++.+..|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 777889999999999998554 22235688888888888899988888888888877763
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.91 E-value=7.3e-05 Score=61.08 Aligned_cols=92 Identities=10% Similarity=-0.209 Sum_probs=70.6
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHhcc-CCC----ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 011249 382 TEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFC----DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLAN 456 (490)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 456 (490)
...+..++..+...|++++|...|++.. ..| ...++..+...+...|++++|+..++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4555667777778888888888887764 222 23477888888999999999999999999999988888888888
Q ss_pred HHH-------hcCCcchHHHHHHH
Q 011249 457 IYA-------SMGKWKDSEIVKMM 473 (490)
Q Consensus 457 ~~~-------~~g~~~~A~~~~~~ 473 (490)
++. +.|++++|+..+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 888 77887755555543
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.90 E-value=0.00023 Score=68.55 Aligned_cols=139 Identities=12% Similarity=0.013 Sum_probs=76.5
Q ss_pred CChhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHhcCCC--------ChHHHHHHHHHHHH
Q 011249 309 KDVISYSSMITAFAD--HG---KSQEALDMFLKMRNEGIEPNQV-TFIGVLTACSHGG--------LVEDGCKQFELMTR 374 (490)
Q Consensus 309 ~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g--------~~~~a~~~~~~~~~ 374 (490)
.+...|...+.+... .+ +...|..+|+++++ ..|+.. .+..+..++.... +...+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 466677776665433 22 25677777777777 356543 4444433332111 12222333333222
Q ss_pred HcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCc
Q 011249 375 VFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTG 449 (490)
Q Consensus 375 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 449 (490)
....+.++..|..+.......|++++|...+++.. ..|+...|..+...+...|+.++|.+.++++..++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 10123334555555555556677777777776655 4456666666666777777777777777777777777665
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.89 E-value=0.00056 Score=65.98 Aligned_cols=141 Identities=11% Similarity=-0.015 Sum_probs=94.5
Q ss_pred CCCcHHHHHHHHHHh--cCC---CChHHHHHHHHHHHHHcCCCCC-chHHHHHHHHHhhc--------CChHHHHHHHHh
Q 011249 342 IEPNQVTFIGVLTAC--SHG---GLVEDGCKQFELMTRVFGIKPL-TEHLTCMVDLLGRS--------GQLEKAHSLIMD 407 (490)
Q Consensus 342 ~~p~~~~~~~l~~~~--~~~---g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 407 (490)
.+.+...|...+++. ... +..+.|..+|+++.+. .|+ ...+..+..++... ++...+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 455667777777763 333 2366888888888763 454 34444444433221 234455555554
Q ss_pred cc----CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccccCC
Q 011249 408 YK----DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSP 483 (490)
Q Consensus 408 ~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 483 (490)
.. .+.++..+..+.......|++++|...++++++++|. ...|..++.++...|+.++|.+.+++....++ ..|
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P-~~p 487 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP-GEN 487 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCc
Confidence 32 3345567777766667788999999999999999984 77888899999999999999999988877665 333
Q ss_pred Cccc
Q 011249 484 GCSW 487 (490)
Q Consensus 484 ~~~~ 487 (490)
.+.|
T Consensus 488 t~~~ 491 (517)
T PRK10153 488 TLYW 491 (517)
T ss_pred hHHH
Confidence 3444
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.89 E-value=4.5e-05 Score=53.93 Aligned_cols=80 Identities=18% Similarity=0.056 Sum_probs=30.7
Q ss_pred CChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCC-ChhhHHHHHHHHhhhCChHHHHHHHH
Q 011249 360 GLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFC-DAGTWGALLGACKVHVNAELGEIAAR 438 (490)
Q Consensus 360 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (490)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++....+ +......+..++...|++++|+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 44444444444444421111122223334444444444444444444421111 12222233444444555555554444
Q ss_pred H
Q 011249 439 H 439 (490)
Q Consensus 439 ~ 439 (490)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 3
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.88 E-value=2.4e-05 Score=52.70 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=37.3
Q ss_pred hcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 011249 394 RSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLA 455 (490)
Q Consensus 394 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 455 (490)
..|++++|+++|+++. .+.+...+..++.+|.+.|++++|.++++++...+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 4566666666666654 3335556666666666666666666666666666666555444443
No 181
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.85 E-value=2.3e-05 Score=43.09 Aligned_cols=31 Identities=19% Similarity=0.439 Sum_probs=27.7
Q ss_pred eehHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 011249 69 FLWTSLIRNHVLHAHFRQSILLYAKMHRLGV 99 (490)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 99 (490)
.+||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998764
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.83 E-value=0.00075 Score=59.99 Aligned_cols=134 Identities=12% Similarity=0.094 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-hcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 011249 312 ISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTA-CSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVD 390 (490)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 390 (490)
.+|-.++....+.+..+.|..+|.++.+.+ ..+...|...... +...++.+.|.++|+...+. ++.+...+...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 457777777777778888888888887542 2223333333333 33356777799999998884 5666777888888
Q ss_pred HHhhcCChHHHHHHHHhcc-CCC----ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCC
Q 011249 391 LLGRSGQLEKAHSLIMDYK-DFC----DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKT 448 (490)
Q Consensus 391 ~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 448 (490)
.+.+.|+.+.|..+|++.. .-+ ....|...+.--.+.|+.+....+.+++.+..|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 8888999999999998776 222 234888888888888999999999999888877744
No 183
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.82 E-value=6.1e-05 Score=50.89 Aligned_cols=65 Identities=18% Similarity=0.032 Sum_probs=54.7
Q ss_pred CchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhC-ChHHHHHHHHHHHhcCC
Q 011249 381 LTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHV-NAELGEIAARHLLELGP 445 (490)
Q Consensus 381 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 445 (490)
++..|..+...+...|++++|+..|++.. .+.++..|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35677788888899999999999998776 5556778888888999998 79999999999999887
No 184
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.79 E-value=0.026 Score=50.91 Aligned_cols=20 Identities=15% Similarity=0.039 Sum_probs=13.7
Q ss_pred HHHhcCCHHHHHHHHhhcCC
Q 011249 126 GYTKIGLMDDAQRLFDSMAE 145 (490)
Q Consensus 126 ~~~~~g~~~~A~~~~~~~~~ 145 (490)
.-...|+.+-|..+++.=+.
T Consensus 9 ~A~~~GR~~LA~~LL~~Ep~ 28 (319)
T PF04840_consen 9 KAYEEGRPKLATKLLELEPR 28 (319)
T ss_pred HHHHcChHHHHHHHHHcCCC
Confidence 35677888888887765443
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.74 E-value=0.0012 Score=49.52 Aligned_cols=107 Identities=16% Similarity=0.094 Sum_probs=65.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCcccC--hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCC--CchhHHHHHHHHH
Q 011249 215 AMTVCYVQNGYAKAAIEMYKVMRQENVRIS--EVAMVGAISACTQLGDVEMAAILAKHVDEGCCD--RTNYVSNALIHMH 290 (490)
Q Consensus 215 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 290 (490)
.+..++-..|+.++|+.+|++....|...+ ...+..+..++...|++++|..+++........ .+......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 455667778888888888888887775543 245566677777888888888888877665311 0222222334455
Q ss_pred HhcCChHHHHHHHhcccCCChhHHHHHHHHH
Q 011249 291 SKCGYLDLAWREFSRIKNKDVISYSSMITAF 321 (490)
Q Consensus 291 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 321 (490)
...|+.++|++.+-....++...|..-|..|
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777666554444444444444433
No 186
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.73 E-value=0.00087 Score=52.27 Aligned_cols=88 Identities=8% Similarity=-0.046 Sum_probs=36.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 011249 215 AMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCG 294 (490)
Q Consensus 215 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 294 (490)
.+...+...|++++|.++|+.+....+ -+..-|..|..++...|++++|+..|....... +.++..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 333344444444444444444443321 123333344444444444444444444444433 233333333444444444
Q ss_pred ChHHHHHHHh
Q 011249 295 YLDLAWREFS 304 (490)
Q Consensus 295 ~~~~A~~~~~ 304 (490)
+.+.|.+.|+
T Consensus 118 ~~~~A~~aF~ 127 (157)
T PRK15363 118 NVCYAIKALK 127 (157)
T ss_pred CHHHHHHHHH
Confidence 4444444443
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.72 E-value=0.0081 Score=52.05 Aligned_cols=173 Identities=12% Similarity=0.050 Sum_probs=99.3
Q ss_pred HHHHHHhcCChHHHHHHHhcccC--CCh-hH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcC-
Q 011249 286 LIHMHSKCGYLDLAWREFSRIKN--KDV-IS---YSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSH- 358 (490)
Q Consensus 286 l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 358 (490)
....+...|++++|.+.|+++.. |+. .. .-.++.++.+.+++++|...+++.++....-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34444556777777777776655 222 11 234556677777888888888877764211111223223322210
Q ss_pred -C---------------CC---hHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHH
Q 011249 359 -G---------------GL---VEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGA 419 (490)
Q Consensus 359 -~---------------g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 419 (490)
. .+ ...|+..|+.+.+. . |+.. -..+|...+..+........ ..
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--y-P~S~-------------ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--Y-PNSQ-------------YTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--C-cCCh-------------hHHHHHHHHHHHHHHHHHHH-HH
Confidence 1 11 23455666666653 2 2221 12333333332221111111 13
Q ss_pred HHHHHhhhCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCcchHHHHHHHhh
Q 011249 420 LLGACKVHVNAELGEIAARHLLELGPEKT---GNSALLANIYASMGKWKDSEIVKMMIS 475 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (490)
+..-|.+.|.+.-|..-++.+++..|+.+ .++..++.+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 45668889999999999999999887755 567778899999999999999877553
No 188
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.0045 Score=52.02 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=90.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCch-----hHHHHH
Q 011249 212 CWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTN-----YVSNAL 286 (490)
Q Consensus 212 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~l 286 (490)
..+.++.++...|.+.-.+..+++.++...+.++.....+.+...+.||.+.|..++++..+..-..+. .+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445666777777888888888888887765667777777888888888888888888877654323332 233333
Q ss_pred HHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH
Q 011249 287 IHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVT 348 (490)
Q Consensus 287 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 348 (490)
...|.-.+++..|...|.++.. .++..-|.-.-+..-.|+...|++.++.|.+. .|...+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 4456666777778777777765 34455555555555567888888888888774 444443
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.70 E-value=0.016 Score=50.25 Aligned_cols=67 Identities=16% Similarity=-0.004 Sum_probs=43.7
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccCh--hhHHHHHHHHhccCChHHHHHHHHHHHhcC
Q 011249 209 DASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISE--VAMVGAISACTQLGDVEMAAILAKHVDEGC 275 (490)
Q Consensus 209 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 275 (490)
++..+-.....+...|++++|++.|+++......+.. .....++.++.+.++++.|...+++..+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4444445566667778888888888888765322211 122455667778888888888888877764
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.69 E-value=0.00035 Score=62.20 Aligned_cols=252 Identities=15% Similarity=0.051 Sum_probs=155.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcC------C---CC
Q 011249 77 NHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMA------E---RN 147 (490)
Q Consensus 77 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~---~~ 147 (490)
-+++.|+....+.+|+...+.|.. |..|.+. .|+. +..+|.-.+++++|++....=. . -.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSA---IYsQ-------LGNAyfyL~DY~kAl~yH~hDltlar~lgdklGE 94 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSA---IYSQ-------LGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGE 94 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHH---HHHH-------hcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcc
Confidence 467889999999999998887643 4334333 3322 3345777788888887643221 1 12
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHhcc-------C--CchhHHHHHHHHHhcCC--------------------hhHH
Q 011249 148 VISWSAMVAGYANCGNMKAAKEFYDRMTE-------K--NSVTWVAMIAGYGKCGE--------------------VREA 198 (490)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~--------------------~~~A 198 (490)
..+...|.+.+--.|.+++|+-.-.+-+. + ....+..+...|...|+ ++.|
T Consensus 95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~A 174 (639)
T KOG1130|consen 95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENA 174 (639)
T ss_pred ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHH
Confidence 33445566666677788877655443321 1 44566667777765543 2233
Q ss_pred HHHHhhcCC---------CCHHhHHHHHHHHHhcCChHHHHHHHHHHH----HcCcc-cChhhHHHHHHHHhccCChHHH
Q 011249 199 KKVFDEISE---------PDASCWAAMTVCYVQNGYAKAAIEMYKVMR----QENVR-ISEVAMVGAISACTQLGDVEMA 264 (490)
Q Consensus 199 ~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-p~~~~~~~l~~~~~~~g~~~~a 264 (490)
.++|.+-.+ .-...|..|...|--.|+++.|+..-+.=. +-|-+ .....+..+.+++.-.|+++.|
T Consensus 175 v~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A 254 (639)
T KOG1130|consen 175 VKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELA 254 (639)
T ss_pred HHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhH
Confidence 334433211 112345556666666788888876544322 22211 1235677788888888999999
Q ss_pred HHHHHHHH----hcCC-CCchhHHHHHHHHHHhcCChHHHHHHHhcccC---------CChhHHHHHHHHHHhcCChHHH
Q 011249 265 AILAKHVD----EGCC-DRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---------KDVISYSSMITAFADHGKSQEA 330 (490)
Q Consensus 265 ~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a 330 (490)
.+.|+... +.|- ........+|.+.|.-..++++|+.++.+-.. ....++-+|..+|...|..++|
T Consensus 255 ~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 255 IEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 88887643 3331 23345566788888888888888888765442 2345777888888888888888
Q ss_pred HHHHHHHHH
Q 011249 331 LDMFLKMRN 339 (490)
Q Consensus 331 ~~~~~~~~~ 339 (490)
+.+.+.-.+
T Consensus 335 l~fae~hl~ 343 (639)
T KOG1130|consen 335 LYFAELHLR 343 (639)
T ss_pred HHHHHHHHH
Confidence 877776554
No 191
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.68 E-value=0.00035 Score=60.89 Aligned_cols=91 Identities=8% Similarity=0.018 Sum_probs=40.0
Q ss_pred cCCCChHHHHHHHHHHHHHcCCCC-CchHHHHHHHHHhhcCChHHHHHHHHhcc-CCC----ChhhHHHHHHHHhhhCCh
Q 011249 357 SHGGLVEDGCKQFELMTRVFGIKP-LTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFC----DAGTWGALLGACKVHVNA 430 (490)
Q Consensus 357 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~ 430 (490)
.+.|++++|...|+.+.+.+.-.+ .+..+..+..+|...|++++|...|+.+. ..| .+..+..++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555554311110 01233444455555555555555554443 111 122333333344445555
Q ss_pred HHHHHHHHHHHhcCCCC
Q 011249 431 ELGEIAARHLLELGPEK 447 (490)
Q Consensus 431 ~~a~~~~~~~~~~~p~~ 447 (490)
++|..+|+++++..|++
T Consensus 234 ~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHHHHCcCC
Confidence 55555555555555543
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.68 E-value=0.00037 Score=62.10 Aligned_cols=129 Identities=10% Similarity=0.007 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHH---HHcCCCC-CchHHHHHHHHHhhcCChHHHHHHHHhcc--------CCCChh
Q 011249 348 TFIGVLTACSHGGLVEDGCKQFELMT---RVFGIKP-LTEHLTCMVDLLGRSGQLEKAHSLIMDYK--------DFCDAG 415 (490)
Q Consensus 348 ~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~ 415 (490)
.|..|...|.-.|+++.|+...+.-. +++|-.. ....+..+..++.-.|+++.|.+.|+.-. ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555555667776665544322 1223221 13345556666666777777777665432 112333
Q ss_pred hHHHHHHHHhhhCChHHHHHHHHHHHhcC------CCCCchHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 416 TWGALLGACKVHVNAELGEIAARHLLELG------PEKTGNSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
...+|.++|.-..++++|+.++.+-+.+. -....++..|+.++...|..++|+.+.++-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566666666667777777766654422 12345667777777777777777766655443
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.67 E-value=0.00047 Score=51.78 Aligned_cols=56 Identities=14% Similarity=0.007 Sum_probs=27.5
Q ss_pred hHHHHHHHHhhhCChHHHHHHHHHHHhcCCC---CCchHHHHHHHHHhcCCcchHHHHH
Q 011249 416 TWGALLGACKVHVNAELGEIAARHLLELGPE---KTGNSALLANIYASMGKWKDSEIVK 471 (490)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (490)
.+..+..++...|++++|..++++.....|+ +......++.++...|++++|++.+
T Consensus 40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 40 ALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3334444455555555555555555554444 3334444444555555555555544
No 194
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.66 E-value=0.0014 Score=53.42 Aligned_cols=81 Identities=11% Similarity=-0.061 Sum_probs=49.8
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCccc--ChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 011249 210 ASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRI--SEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALI 287 (490)
Q Consensus 210 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 287 (490)
...|..++..+...|++++|+..|++.......| ...++..+..++...|++++|...++...+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3455666677777777777777777776543222 12466667777777777777777777776553 33334444444
Q ss_pred HHHH
Q 011249 288 HMHS 291 (490)
Q Consensus 288 ~~~~ 291 (490)
.++.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 195
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0018 Score=57.93 Aligned_cols=273 Identities=12% Similarity=-0.005 Sum_probs=147.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhcc--C-CchhHHHHHHHHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHHHhcC
Q 011249 151 WSAMVAGYANCGNMKAAKEFYDRMTE--K-NSVTWVAMIAGYGKCGEVREAKKVFDEISE---PDASCWAAMTVCYVQNG 224 (490)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g 224 (490)
.......+.+..++..|+..+....+ | +..-|..-+..+...|++++|.--.+.-.+ .......-.-+++...+
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 33455778888899999999998886 3 555666667777777888887766554443 23334555566666667
Q ss_pred ChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcC-CCCchhHHHHH-HHHHHhcCChHHHHHH
Q 011249 225 YAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGC-CDRTNYVSNAL-IHMHSKCGYLDLAWRE 302 (490)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~A~~~ 302 (490)
+..+|.+.++.-. .+ ....+...++.+.... -+|....+..+ ..++...|++++|.+.
T Consensus 132 ~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 7667766665211 01 0111111222221111 12222333222 2344455666666665
Q ss_pred HhcccCCCh-hHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHH---H----------HHHhcCCCChHHHH
Q 011249 303 FSRIKNKDV-ISYSSMIT--AFADHGKSQEALDMFLKMRNEGIEPNQVTFIG---V----------LTACSHGGLVEDGC 366 (490)
Q Consensus 303 ~~~~~~~~~-~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~---l----------~~~~~~~g~~~~a~ 366 (490)
--.+.+-|. ..+...+. ++...++.+.+...|++.+. ..|+...-.. . ..-..+.|++..|.
T Consensus 192 a~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 192 AIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 555544222 12222222 33445666677777766665 3444332111 1 11234667777777
Q ss_pred HHHHHHHHH--cCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhh---HHHHHHHHhhhCChHHHHHHHHHHH
Q 011249 367 KQFELMTRV--FGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGT---WGALLGACKVHVNAELGEIAARHLL 441 (490)
Q Consensus 367 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (490)
+.+.+.+.. .+..|+...|.....+..+.|+..+|+.-.+... ..|+.. +..-..++...+++++|++-++++.
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777531 0122334455555666677777777777776655 333332 2222345566677777777777777
Q ss_pred hcCCC
Q 011249 442 ELGPE 446 (490)
Q Consensus 442 ~~~p~ 446 (490)
+...+
T Consensus 349 q~~~s 353 (486)
T KOG0550|consen 349 QLEKD 353 (486)
T ss_pred hhccc
Confidence 75544
No 196
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=6.9e-05 Score=41.14 Aligned_cols=30 Identities=40% Similarity=0.804 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011249 313 SYSSMITAFADHGKSQEALDMFLKMRNEGI 342 (490)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 342 (490)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.0024 Score=53.61 Aligned_cols=136 Identities=12% Similarity=-0.031 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHH-----H
Q 011249 312 ISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHL-----T 386 (490)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~ 386 (490)
.+.+.++..+.-.|.+.-.+..+.+.++...+-++.....+++.-.+.|+.+.|..+|++..+. .-..+.... .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 4556677777777888888888988888655557778888888888899999999999987764 333333332 3
Q ss_pred HHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCC
Q 011249 387 CMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKT 448 (490)
Q Consensus 387 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 448 (490)
.....|.-.+++.+|...+.+++ ++.++...|.-.-...-.|+...|++.++.+.+..|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 33445667778888888888877 333444555555455667888889999998888888733
No 198
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.63 E-value=2.9e-05 Score=43.44 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHH
Q 011249 436 AARHLLELGPEKTGNSALLANIYASMGKWKDSEI 469 (490)
Q Consensus 436 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 469 (490)
+|+++++.+|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3788999999999999999999999999999863
No 199
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.58 E-value=0.018 Score=52.38 Aligned_cols=122 Identities=16% Similarity=0.081 Sum_probs=66.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhc----C-----CCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhh
Q 011249 324 HGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACS----H-----GGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGR 394 (490)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (490)
.|+.++|+.++..+....-.+++.++..+.+.|- . ....++|+..|.+.- .+.|+...--.++..+..
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~ 271 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLML 271 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHH
Confidence 5566666666666444444555555555555431 1 123556666666553 334543333333333333
Q ss_pred cCChHHH----HHHH---Hhcc-------CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCC
Q 011249 395 SGQLEKA----HSLI---MDYK-------DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKT 448 (490)
Q Consensus 395 ~g~~~~A----~~~~---~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 448 (490)
.|...+. .++- ..+. ...+-..+.+++.++.-.||.++|.+.++++.+..|+.-
T Consensus 272 ~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 272 AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4432211 1211 1100 223444566788889999999999999999999887643
No 200
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.58 E-value=0.0017 Score=57.70 Aligned_cols=142 Identities=11% Similarity=0.011 Sum_probs=102.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHH-HhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 011249 211 SCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISA-CTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHM 289 (490)
Q Consensus 211 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (490)
.+|-.+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. ++.+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888999999999998543 2234445444444 33457777799999998876 47788888888999
Q ss_pred HHhcCChHHHHHHHhcccC--C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 011249 290 HSKCGYLDLAWREFSRIKN--K----DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTAC 356 (490)
Q Consensus 290 ~~~~~~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 356 (490)
+.+.++.+.|..+|++... + ....|...+..-.+.|+.+.+.++.+++.+. .|+...+..++.-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 9999999999999998876 2 2358888888888899999999999988874 55544444444433
No 201
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.56 E-value=0.0019 Score=59.94 Aligned_cols=115 Identities=15% Similarity=0.132 Sum_probs=61.2
Q ss_pred ccChhhHHHHHHHHhccCChHHHHHHHHHHHhc--CCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC----CChhHHH
Q 011249 242 RISEVAMVGAISACTQLGDVEMAAILAKHVDEG--CCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN----KDVISYS 315 (490)
Q Consensus 242 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~ 315 (490)
+.+......+++.+....+.+.+..++-..... .....+.+..++++.|.+.|..+.+..++..=.. ||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334455555555555555555555555555443 2222233344566666666666666666555443 5566666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 011249 316 SMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTAC 356 (490)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 356 (490)
.+++.+.+.|++..|.++...|...+...+..|+..-+.+|
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 66666666666666666666555544444444444444333
No 202
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.55 E-value=0.00015 Score=43.64 Aligned_cols=42 Identities=26% Similarity=0.293 Sum_probs=38.0
Q ss_pred hhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 011249 415 GTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLAN 456 (490)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 456 (490)
.++..+..++...|++++|+++|+++++..|+++.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999998888764
No 203
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.54 E-value=0.085 Score=50.19 Aligned_cols=179 Identities=13% Similarity=0.055 Sum_probs=123.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcccCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CcHHHHHHHH
Q 011249 279 TNYVSNALIHMHSKCGYLDLAWREFSRIKNK---DVISYSSMITAFADHGKSQEALDMFLKMRNEGIE--PNQVTFIGVL 353 (490)
Q Consensus 279 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~ 353 (490)
+...|...+..-...|+.+.+.-.|+...-| -...|-..+.-....|+.+.|..++....+--.+ |....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567777888888899999999999887764 2344555555555569999998888877664322 3333333333
Q ss_pred HHhcCCCChHHHHHHHHHHHHHcCCCCC-chHHHHHHHHHhhcCChHHHH---HHHHhcc-CCCChhhHHHHHH-----H
Q 011249 354 TACSHGGLVEDGCKQFELMTRVFGIKPL-TEHLTCMVDLLGRSGQLEKAH---SLIMDYK-DFCDAGTWGALLG-----A 423 (490)
Q Consensus 354 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~~~~~~~l~~-----~ 423 (490)
+...|++..|..+++.+... . |+ ...-..-+....+.|..+.+. +++.... ...+..+...+.. .
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 45678999999999999985 3 44 333334456667888888888 4444433 2333333333332 2
Q ss_pred HhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 011249 424 CKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMG 462 (490)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 462 (490)
+...++.+.|..++.++.+..|.+...|..+.......+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 345789999999999999999999999999988877665
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.54 E-value=0.00037 Score=47.63 Aligned_cols=66 Identities=18% Similarity=0.086 Sum_probs=52.8
Q ss_pred HHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHH
Q 011249 389 VDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALL 454 (490)
Q Consensus 389 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 454 (490)
...|.+.+++++|.++++.+. .+.++..+......+...|++++|.+.++++++..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 356788889999999988877 445666777788888999999999999999999999877655443
No 205
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.52 E-value=0.00033 Score=64.17 Aligned_cols=62 Identities=10% Similarity=-0.083 Sum_probs=33.7
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHhcc-CCCChh----hHHHHHHHHhhhCChHHHHHHHHHHHhc
Q 011249 382 TEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCDAG----TWGALLGACKVHVNAELGEIAARHLLEL 443 (490)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (490)
...++.+..+|.+.|++++|+..|++.. ..|+.. .|..+..+|...|+.++|++.++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555556666666666655533 333322 3555555555566666666666666554
No 206
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.50 E-value=0.066 Score=48.02 Aligned_cols=299 Identities=15% Similarity=0.100 Sum_probs=174.3
Q ss_pred HHHHHHHhccCCCCCCceehHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHh
Q 011249 52 LSYARQVFDQIPKCKTQFLWTSLIRNHVL--HAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTK 129 (490)
Q Consensus 52 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~ 129 (490)
+..+.+.|..-.+. ..|.+|-.++.. .||-..|.++-.+.... +.-|..-...++.+- .-.-
T Consensus 69 P~t~~Ryfr~rKRd---rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQ------------aal~ 132 (531)
T COG3898 69 PYTARRYFRERKRD---RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQ------------AALL 132 (531)
T ss_pred cHHHHHHHHHHHhh---hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHH------------HHHh
Confidence 44455555544332 456677666654 46777777766654422 334555555555542 3455
Q ss_pred cCCHHHHHHHHhhcCC-CCHh--HHHHHHHHHHhCCChHHHHHHHHHhccC---CchhHHHHHHHHHhcCChhHHHHHHh
Q 011249 130 IGLMDDAQRLFDSMAE-RNVI--SWSAMVAGYANCGNMKAAKEFYDRMTEK---NSVTWVAMIAGYGKCGEVREAKKVFD 203 (490)
Q Consensus 130 ~g~~~~A~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 203 (490)
.|+.+.|.+-|+.|.. |... -...|.-...+.|+.+.|.++-++.-+. -...+...+...+..|+|+.|+++++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 6899999999999876 4332 2334444456678888888887777643 34566777888888888888888887
Q ss_pred hcCC-----CCHHh--HHHHHHHHH---hcCChHHHHHHHHHHHHcCcccChh-hHHHHHHHHhccCChHHHHHHHHHHH
Q 011249 204 EISE-----PDASC--WAAMTVCYV---QNGYAKAAIEMYKVMRQENVRISEV-AMVGAISACTQLGDVEMAAILAKHVD 272 (490)
Q Consensus 204 ~~~~-----~~~~~--~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 272 (490)
.-.. ++..- -..|+.+-. -..+...|...-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+-
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 6543 33211 111221111 12234445444433333 344432 22233456777788888888888777
Q ss_pred hcCCCCchhHHHHHHHHHHhcCChHHH----HHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH
Q 011249 273 EGCCDRTNYVSNALIHMHSKCGYLDLA----WREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVT 348 (490)
Q Consensus 273 ~~~~~~~~~~~~~l~~~~~~~~~~~~A----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 348 (490)
+....|++. .+..+.+.|+.... .+-++.|...+..+...+..+-...|++..|..--+.... ..|....
T Consensus 291 K~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~ 364 (531)
T COG3898 291 KAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESA 364 (531)
T ss_pred hcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhH
Confidence 765445432 23334455543322 1233445555666666666666677777777666555554 4666777
Q ss_pred HHHHHHHh-cCCCChHHHHHHHHHHHH
Q 011249 349 FIGVLTAC-SHGGLVEDGCKQFELMTR 374 (490)
Q Consensus 349 ~~~l~~~~-~~~g~~~~a~~~~~~~~~ 374 (490)
|..+.+.- ...|+-.++...+.+..+
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 76666653 345777777777777665
No 207
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0017 Score=58.28 Aligned_cols=96 Identities=9% Similarity=-0.014 Sum_probs=80.4
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 011249 382 TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYA 459 (490)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 459 (490)
..++..+.-+|.+.+++.+|++...+.. .++|....-.-..++...|+++.|+..|+++++.+|+|..+-..|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3466778899999999999999998776 56788888888899999999999999999999999999999998987777
Q ss_pred hcCCcchH-HHHHHHhhhc
Q 011249 460 SMGKWKDS-EIVKMMISET 477 (490)
Q Consensus 460 ~~g~~~~A-~~~~~~~~~~ 477 (490)
+..++.+. .++|..|-..
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 76655444 7788887654
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.43 E-value=0.0034 Score=54.81 Aligned_cols=94 Identities=9% Similarity=0.015 Sum_probs=61.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhcc-CCCCh----hhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 011249 385 LTCMVDLLGRSGQLEKAHSLIMDYK-DFCDA----GTWGALLGACKVHVNAELGEIAARHLLELGPEK---TGNSALLAN 456 (490)
Q Consensus 385 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 456 (490)
|......+.+.|++++|...|+.+. ..|+. ..+..+..++...|++++|...|+++.+..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333455677777777777666 23332 356666677777777777777777777766664 345555577
Q ss_pred HHHhcCCcchHHHHHHHhhhcc
Q 011249 457 IYASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 457 ~~~~~g~~~~A~~~~~~~~~~~ 478 (490)
++...|++++|.++++++.+..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 7777777777777777776543
No 209
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.42 E-value=0.0024 Score=59.25 Aligned_cols=120 Identities=10% Similarity=0.014 Sum_probs=97.3
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC-C-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH
Q 011249 275 CCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN-K-----DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVT 348 (490)
Q Consensus 275 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 348 (490)
+.+.+......+++.+....+++.+..++.+... | .+.+..+++..|...|..++++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3456666777788888888888899888877664 2 245667999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhc
Q 011249 349 FIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRS 395 (490)
Q Consensus 349 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 395 (490)
++.|+..+.+.|++..|.++...|..+ ....++.++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 999999999999999999999988875 5556666655444444443
No 210
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.41 E-value=0.0031 Score=45.64 Aligned_cols=80 Identities=13% Similarity=0.159 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHhcCCC--------ChHHHHHHHHHHHHHcCCCCCchH
Q 011249 314 YSSMITAFADHGKSQEALDMFLKMRNEGI-EPNQVTFIGVLTACSHGG--------LVEDGCKQFELMTRVFGIKPLTEH 384 (490)
Q Consensus 314 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~ 384 (490)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-..+.+++.+... +++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34455556667999999999999999999 899999999999866432 345678889999885 89999999
Q ss_pred HHHHHHHHhh
Q 011249 385 LTCMVDLLGR 394 (490)
Q Consensus 385 ~~~l~~~~~~ 394 (490)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887764
No 211
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.41 E-value=0.0028 Score=45.85 Aligned_cols=80 Identities=6% Similarity=-0.016 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCc-ccChhhHHHHHHHHhccC--------ChHHHHHHHHHHHhcCCCCchhHH
Q 011249 213 WAAMTVCYVQNGYAKAAIEMYKVMRQENV-RISEVAMVGAISACTQLG--------DVEMAAILAKHVDEGCCDRTNYVS 283 (490)
Q Consensus 213 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~ 283 (490)
-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. +......+|+++...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 899999999999876543 234567888899888899999999
Q ss_pred HHHHHHHHh
Q 011249 284 NALIHMHSK 292 (490)
Q Consensus 284 ~~l~~~~~~ 292 (490)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988887764
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.41 E-value=0.017 Score=54.98 Aligned_cols=239 Identities=12% Similarity=0.043 Sum_probs=138.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcC-----------CCCHHhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCcccChhhH
Q 011249 182 WVAMIAGYGKCGEVREAKKVFDEIS-----------EPDASCWAAMTVCYVQNGY--AKAAIEMYKVMRQENVRISEVAM 248 (490)
Q Consensus 182 ~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~ 248 (490)
+.+-+..|...|.+++|.++----. ..+...++.--.+|.+..+ +-+.+.-++++++.|-.|+...
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL- 637 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL- 637 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH-
Confidence 3444555677777777754321110 0223334445556666554 3345556677788887787653
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--------------CChhHH
Q 011249 249 VGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--------------KDVISY 314 (490)
Q Consensus 249 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------~~~~~~ 314 (490)
+...|+-.|++.+|.++|.+- |.. +..+.+|.....++.|.+++..... .++.--
T Consensus 638 --lA~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP 706 (1081)
T KOG1538|consen 638 --LADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP 706 (1081)
T ss_pred --HHHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc
Confidence 455677788999998888653 211 2245566666666666666544321 111111
Q ss_pred HHHHHHHHhcCChHHHHHHHHH------HHHcC--C-CCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHH
Q 011249 315 SSMITAFADHGKSQEALDMFLK------MRNEG--I-EPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHL 385 (490)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~------~~~~~--~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 385 (490)
.+....+...|+.++|..+.-+ +.+-+ + ..+..+...+...+.+...+..|-++|.++-..
T Consensus 707 kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------- 776 (1081)
T KOG1538|consen 707 KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------- 776 (1081)
T ss_pred HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH----------
Confidence 2344555667777777654321 12211 1 123345555555566777788888888887442
Q ss_pred HHHHHHHhhcCChHHHHHHHHhcc-CCCChh-----------hHHHHHHHHhhhCChHHHHHHHHHHHh
Q 011249 386 TCMVDLLGRSGQLEKAHSLIMDYK-DFCDAG-----------TWGALLGACKVHVNAELGEIAARHLLE 442 (490)
Q Consensus 386 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (490)
..+++.....++|++|..+-++.+ ..|+.. -|...-.+|.+.|+..+|.++++++..
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 457788889999999999998887 223321 112222456667777777777776654
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.23 E-value=0.00036 Score=48.43 Aligned_cols=62 Identities=10% Similarity=0.116 Sum_probs=43.2
Q ss_pred hhHHHHHHHHhhhCChHHHHHHHHHHHhc----CCC---CCchHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 415 GTWGALLGACKVHVNAELGEIAARHLLEL----GPE---KTGNSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
.+++.+...+...|++++|+..+++++++ +++ -..++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667777777778888888877777753 222 245677788888888888888888877654
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0015 Score=58.54 Aligned_cols=67 Identities=10% Similarity=-0.011 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccc
Q 011249 414 AGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKK 480 (490)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 480 (490)
...+..+.-++.+.+++..|++...++++.+|+|..++..-+.+|...|+++.|+..|+++.+..+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 3466778888999999999999999999999999999999999999999999999999999876543
No 215
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.16 E-value=0.0076 Score=49.54 Aligned_cols=97 Identities=21% Similarity=0.329 Sum_probs=75.0
Q ss_pred HHHHhcc--cCCChhHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCC------------
Q 011249 300 WREFSRI--KNKDVISYSSMITAFAD-----HGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGG------------ 360 (490)
Q Consensus 300 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------------ 360 (490)
...|+.. ..++-.+|..+++.|.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 33566777777777764 4677888888999999999999999999999876522
Q ss_pred ----ChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCC
Q 011249 361 ----LVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQ 397 (490)
Q Consensus 361 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 397 (490)
+-+-|++++++|.. +|+-||.+++..++..+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 34678899999988 5999999999999998877664
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.16 E-value=0.12 Score=43.60 Aligned_cols=64 Identities=16% Similarity=0.068 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCcc--cChhhHHHHHHHHhccCChHHHHHHHHHHHhcC
Q 011249 212 CWAAMTVCYVQNGYAKAAIEMYKVMRQENVR--ISEVAMVGAISACTQLGDVEMAAILAKHVDEGC 275 (490)
Q Consensus 212 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 275 (490)
..-.....+...|++++|++.|+.+...... -.......++.++.+.|+++.|...++.+.+.-
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3444556677788888888888888764221 122455566777778888888888888776654
No 217
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.12 E-value=0.19 Score=45.37 Aligned_cols=104 Identities=15% Similarity=0.092 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc
Q 011249 214 AAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKC 293 (490)
Q Consensus 214 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 293 (490)
+..+.-+...|+...|.++-++.. .|+...|...+.+++..++|++-.++... .-++.-|..++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 333444455555555554443332 34555555555555555555554443221 11223344455555555
Q ss_pred CChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHH
Q 011249 294 GYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDM 333 (490)
Q Consensus 294 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 333 (490)
|+..+|..++..+. +..-+..|.+.|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~~------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKIP------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhCC------hHHHHHHHHHCCCHHHHHHH
Confidence 55555555555422 13334445555555555443
No 218
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.10 E-value=0.042 Score=46.34 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=36.9
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCC--C----CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011249 184 AMIAGYGKCGEVREAKKVFDEISE--P----DASCWAAMTVCYVQNGYAKAAIEMYKVMRQE 239 (490)
Q Consensus 184 ~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (490)
..+..+...|++++|.+.|+.+.. | .....-.++.++.+.|+++.|...++++.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555667777777777777654 2 2334556777888888888888888887765
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.023 Score=49.24 Aligned_cols=103 Identities=17% Similarity=0.021 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhc---CChHHHHHHHHhcc--CCCChhhHHH
Q 011249 345 NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRS---GQLEKAHSLIMDYK--DFCDAGTWGA 419 (490)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~--~~~~~~~~~~ 419 (490)
|...|..|...|...|+.+.|...|....+ -.++++..+..+..++... ....++..+|+++. ++.++....-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 556788888888888888888888888876 3445566666666655432 24567777787766 4445666666
Q ss_pred HHHHHhhhCChHHHHHHHHHHHhcCCCCCc
Q 011249 420 LLGACKVHVNAELGEIAARHLLELGPEKTG 449 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 449 (490)
|...+...|++.+|...|+.+++..|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 777788888888888888888887765443
No 220
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.03 E-value=0.013 Score=45.07 Aligned_cols=90 Identities=11% Similarity=-0.047 Sum_probs=61.4
Q ss_pred HHHHHhhcCChHHHHHHHHhcc-----CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCc---hHHHHHHHHH
Q 011249 388 MVDLLGRSGQLEKAHSLIMDYK-----DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTG---NSALLANIYA 459 (490)
Q Consensus 388 l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~ 459 (490)
-.....+.|++++|.+.|+.+. .+-....-..++.++...+++++|...+++.+++.|.++. ++...+-++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3445567788888888887776 1123445667778888889999999999999998887764 4444454555
Q ss_pred hcCC---------------cchHHHHHHHhhhc
Q 011249 460 SMGK---------------WKDSEIVKMMISET 477 (490)
Q Consensus 460 ~~g~---------------~~~A~~~~~~~~~~ 477 (490)
+... ..+|...|+++++.
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 5544 55677777766643
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.01 E-value=0.0013 Score=45.64 Aligned_cols=61 Identities=13% Similarity=-0.022 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHhcc-----CC---CC-hhhHHHHHHHHhhhCChHHHHHHHHHHHhc
Q 011249 383 EHLTCMVDLLGRSGQLEKAHSLIMDYK-----DF---CD-AGTWGALLGACKVHVNAELGEIAARHLLEL 443 (490)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (490)
.+++.+..+|...|++++|++.|++.. .. |+ ..++..+...+...|++++|++.++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345566666666666666666665544 11 22 346667777777788888888888777653
No 222
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.00 E-value=0.26 Score=47.43 Aligned_cols=98 Identities=10% Similarity=0.066 Sum_probs=63.7
Q ss_pred HHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCC
Q 011249 300 WREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIK 379 (490)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 379 (490)
.++-.++...+..+...+..-+.+...+.-|-++|.+|-+ ...+++.....++|++|..+-++..+ +.
T Consensus 736 idI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe---~~ 803 (1081)
T KOG1538|consen 736 IDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE---FK 803 (1081)
T ss_pred HHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc---cc
Confidence 3333444445556666666667777788888888887754 33567778889999999988877654 34
Q ss_pred CCchH-----------HHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 380 PLTEH-----------LTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 380 ~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
|++.. +...-.+|.+.|+-.||.++++++.
T Consensus 804 ~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 804 DDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred ccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 44321 2222346667777777777777665
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.00 E-value=0.11 Score=47.39 Aligned_cols=78 Identities=5% Similarity=0.014 Sum_probs=48.0
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhcCCC-------CHHhHHHHHHHHHh---cCChHHHHHHHHHHHHcCcccChhh
Q 011249 178 NSVTWVAMIAGYGKCGEVREAKKVFDEISEP-------DASCWAAMTVCYVQ---NGYAKAAIEMYKVMRQENVRISEVA 247 (490)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~ 247 (490)
++.+...++-+|....+++..+++.+.+... ....-...+-++-+ .|+.++|++++..+....-.+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3344445555677777777777777777652 22222234445555 6777888888777555445667777
Q ss_pred HHHHHHHH
Q 011249 248 MVGAISAC 255 (490)
Q Consensus 248 ~~~l~~~~ 255 (490)
+..+.+.|
T Consensus 220 ~gL~GRIy 227 (374)
T PF13281_consen 220 LGLLGRIY 227 (374)
T ss_pred HHHHHHHH
Confidence 77766655
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.93 E-value=0.05 Score=52.30 Aligned_cols=163 Identities=14% Similarity=0.050 Sum_probs=107.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcH-----HHHHHHHHHhc----CCCChHHHHHHHHHHHHHcCCCCCch
Q 011249 314 YSSMITAFADHGKSQEALDMFLKMRNEG-IEPNQ-----VTFIGVLTACS----HGGLVEDGCKQFELMTRVFGIKPLTE 383 (490)
Q Consensus 314 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~-----~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~ 383 (490)
...+++...=.|+-+.+++.+.+..+.+ +.-.. -.|..++..+. .....+.|.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3444555555677777777777766532 22111 12333333333 245678899999999873 34544
Q ss_pred HHH-HHHHHHhhcCChHHHHHHHHhccC------CCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHH-H
Q 011249 384 HLT-CMVDLLGRSGQLEKAHSLIMDYKD------FCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALL-A 455 (490)
Q Consensus 384 ~~~-~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~ 455 (490)
.|. .-.+.+...|++++|++.|+.... +.....+--++..+....++++|.+.|.++.+.+.-+..+|..+ +
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 443 445677788999999999986551 12333455566778889999999999999999776656555554 5
Q ss_pred HHHHhcCCc-------chHHHHHHHhhhccc
Q 011249 456 NIYASMGKW-------KDSEIVKMMISETEK 479 (490)
Q Consensus 456 ~~~~~~g~~-------~~A~~~~~~~~~~~~ 479 (490)
-++...|+. ++|.++++++.....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 567778888 888889888766543
No 225
>PRK15331 chaperone protein SicA; Provisional
Probab=96.92 E-value=0.044 Score=43.19 Aligned_cols=89 Identities=11% Similarity=-0.113 Sum_probs=67.1
Q ss_pred HhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHH
Q 011249 355 ACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAEL 432 (490)
Q Consensus 355 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 432 (490)
-+...|++++|..+|.-+.. --+-+...+..|..++-..+++++|+..|.... ...|+..+-.....+...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 35678999999999988876 233455667788888888899999999886544 34555556667778888899999
Q ss_pred HHHHHHHHHhcCCC
Q 011249 433 GEIAARHLLELGPE 446 (490)
Q Consensus 433 a~~~~~~~~~~~p~ 446 (490)
|...|+.+.+ .|.
T Consensus 124 A~~~f~~a~~-~~~ 136 (165)
T PRK15331 124 ARQCFELVNE-RTE 136 (165)
T ss_pred HHHHHHHHHh-Ccc
Confidence 9999988888 344
No 226
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.90 E-value=0.0027 Score=50.44 Aligned_cols=60 Identities=18% Similarity=0.056 Sum_probs=47.8
Q ss_pred hHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhh
Q 011249 416 TWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMIS 475 (490)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (490)
....++..+...|++++|.+.+++++..+|-+..++..++.+|...|+..+|.+.|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 445566677788899999999999999999988899999999999999999999888764
No 227
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.89 E-value=0.014 Score=47.99 Aligned_cols=87 Identities=11% Similarity=0.084 Sum_probs=51.5
Q ss_pred CCHHhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCcccChhhHHHHHHHHhcc----------------CChHHHHH
Q 011249 208 PDASCWAAMTVCYVQN-----GYAKAAIEMYKVMRQENVRISEVAMVGAISACTQL----------------GDVEMAAI 266 (490)
Q Consensus 208 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~a~~ 266 (490)
.+-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.|++++-+. .+.+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 4455555555555432 44555555566666666666666666666665431 12355666
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 011249 267 LAKHVDEGCCDRTNYVSNALIHMHSKCG 294 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 294 (490)
++++|...|+-||..++..+++.+.+.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 7777777777777777776666665544
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.1 Score=43.67 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=26.2
Q ss_pred HHHHHHHHhhhCChHHHHHHHHHHHhc----CCCCCchHHHHHHHHHhcCCcchHHHH
Q 011249 417 WGALLGACKVHVNAELGEIAARHLLEL----GPEKTGNSALLANIYASMGKWKDSEIV 470 (490)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (490)
+...+-.+....|+..|.+.++...+. +|++......|+.+| ..|+.+++..+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 334444444555666666666654442 244555555555443 33444544443
No 229
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.58 Score=45.97 Aligned_cols=303 Identities=14% Similarity=0.060 Sum_probs=176.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhccCC---chhHHHHHHHHHhcCCh---hHHHHHHhhcCC--CCHHhHHHHHHHHHhc
Q 011249 152 SAMVAGYANCGNMKAAKEFYDRMTEKN---SVTWVAMIAGYGKCGEV---REAKKVFDEISE--PDASCWAAMTVCYVQN 223 (490)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~--~~~~~~~~l~~~~~~~ 223 (490)
..++.-+...+.+..|+++-..+..|. ...|......+++..+. +-+..+=+++.. ....+|..+++.....
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 346777888999999999999998875 67788888888876432 223333344444 4556788888888899
Q ss_pred CChHHHHHHHHHHHHcCcc----cChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHH
Q 011249 224 GYAKAAIEMYKVMRQENVR----ISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLA 299 (490)
Q Consensus 224 g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 299 (490)
|+++.|..+++.=...+-+ .+..-+...+.-+...|+.+-...++-++...- +. ........+...|
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~------s~l~~~l~~~p~a 591 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NR------SSLFMTLRNQPLA 591 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HH------HHHHHHHHhchhh
Confidence 9999999887652221111 011122233333444455554444444443321 00 0111112334445
Q ss_pred HHHHhcccCC-ChhHHHHHHHHHHhcCChHHHHH-HHHHHH----HcCCCCcHHHHHHHHHHhcCCCC----------hH
Q 011249 300 WREFSRIKNK-DVISYSSMITAFADHGKSQEALD-MFLKMR----NEGIEPNQVTFIGVLTACSHGGL----------VE 363 (490)
Q Consensus 300 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~----~~~~~p~~~~~~~l~~~~~~~g~----------~~ 363 (490)
..+|.+..+. |..+ +-+.|....+...+-. .++... ..|..|+.. .....|.+... ..
T Consensus 592 ~~lY~~~~r~~~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 592 LSLYRQFMRHQDRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred hHHHHHHHHhhchhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHH
Confidence 5555554431 1111 1112222222222111 111111 122333333 23333333322 22
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhc
Q 011249 364 DGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLEL 443 (490)
Q Consensus 364 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (490)
+-.++.+.+..+++..-..-+.+--+.-+...|+..+|.++-.+.. -|+...|.--+.++...+++++-+++-+. .
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAks---k 741 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKS---K 741 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhc---c
Confidence 3334455555555655555556666777888999999999999998 67888888888899999998876665443 2
Q ss_pred CCCCCchHHHHHHHHHhcCCcchHHHHHHHhh
Q 011249 444 GPEKTGNSALLANIYASMGKWKDSEIVKMMIS 475 (490)
Q Consensus 444 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (490)
. +|.-|.-...+|.+.|+.++|.+++.+..
T Consensus 742 k--sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 742 K--SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred C--CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 2 37778888999999999999999987653
No 230
>PRK11906 transcriptional regulator; Provisional
Probab=96.72 E-value=0.024 Score=52.47 Aligned_cols=145 Identities=14% Similarity=0.082 Sum_probs=93.0
Q ss_pred ChHHHHHHHHHHHH-cCCCCcH-HHHHHHHHHhcC---------CCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhh
Q 011249 326 KSQEALDMFLKMRN-EGIEPNQ-VTFIGVLTACSH---------GGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGR 394 (490)
Q Consensus 326 ~~~~a~~~~~~~~~-~~~~p~~-~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (490)
..+.|+.+|.+... ..+.|+. ..|..+..++.. .....+|.+.-++..+ --+.|+.....+..++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 35678888888882 2256654 356555554321 1233455666666655 344556666667777777
Q ss_pred cCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchH--HHHHHHHHhcCCcchHHHH
Q 011249 395 SGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNS--ALLANIYASMGKWKDSEIV 470 (490)
Q Consensus 395 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~ 470 (490)
.|+++.|...|++.. .+....+|......+.-.|+.++|.+.++++++++|....+- ...+..|+.. ..++|+++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 778888888888776 334455777777777788888888888888888888754433 3333345544 45777777
Q ss_pred HHH
Q 011249 471 KMM 473 (490)
Q Consensus 471 ~~~ 473 (490)
+-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 643
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.12 Score=44.78 Aligned_cols=119 Identities=8% Similarity=0.025 Sum_probs=58.2
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHH---HHHHHhhhCChHH
Q 011249 356 CSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGA---LLGACKVHVNAEL 432 (490)
Q Consensus 356 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~ 432 (490)
....|+..+|...|+.... -.+-+...-..++.+|...|+.+.|..++..++..-...-+.. -+..+.+..+..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3445666666666666655 2233344445556666666666666666666652222222221 1222222222222
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 433 GEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 433 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
... ++.-...+|+|...-..++..+...|+.++|.+.+=.+.++
T Consensus 222 ~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 22223345666666666666666666666666655444433
No 232
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.62 E-value=0.77 Score=44.78 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=26.8
Q ss_pred hcCCCCHHHHHHHhccCCCCCCceehHHHHHHHHhcCChhHHHHHHH
Q 011249 46 QLPGDNLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYA 92 (490)
Q Consensus 46 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 92 (490)
+--|. +++|.+++=.+.++|. -|....+-|+|-...++++
T Consensus 745 ~~~g~-feeaek~yld~drrDL------Aielr~klgDwfrV~qL~r 784 (1189)
T KOG2041|consen 745 AFYGE-FEEAEKLYLDADRRDL------AIELRKKLGDWFRVYQLIR 784 (1189)
T ss_pred hhhcc-hhHhhhhhhccchhhh------hHHHHHhhhhHHHHHHHHH
Confidence 34567 8888888887777665 4455556667666666654
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.54 E-value=0.027 Score=48.20 Aligned_cols=89 Identities=10% Similarity=0.020 Sum_probs=44.6
Q ss_pred CCChHHHHHHHHHHHHHcCCCCC---chHHHHHHHHHhhcCChHHHHHHHHhcc----CC-CChhhHHHHHHHHhhhCCh
Q 011249 359 GGLVEDGCKQFELMTRVFGIKPL---TEHLTCMVDLLGRSGQLEKAHSLIMDYK----DF-CDAGTWGALLGACKVHVNA 430 (490)
Q Consensus 359 ~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~ 430 (490)
.|++..|...|....+. .|-+ +..+..|..++...|++++|..+|..+. .. .-+..+--|.....+.|+.
T Consensus 154 sgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 154 SGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred cCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 44555555555555552 2221 2223345555555555555555554443 11 1223444444555556666
Q ss_pred HHHHHHHHHHHhcCCCCCc
Q 011249 431 ELGEIAARHLLELGPEKTG 449 (490)
Q Consensus 431 ~~a~~~~~~~~~~~p~~~~ 449 (490)
++|...|+++.+..|+.+.
T Consensus 232 d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 232 DEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHHHHCCCCHH
Confidence 6666666666666665443
No 234
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.53 E-value=0.038 Score=42.06 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=42.4
Q ss_pred CCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHh
Q 011249 341 GIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLG 393 (490)
Q Consensus 341 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 393 (490)
...|+..+..+++.+|+..|++..|+++++.+.+.++++.+..+|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35678888888888888888888888888888888888777778877776443
No 235
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.51 E-value=0.028 Score=41.90 Aligned_cols=51 Identities=12% Similarity=0.004 Sum_probs=24.3
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhc
Q 011249 356 CSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDY 408 (490)
Q Consensus 356 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 408 (490)
....|+.+.|++.|.+... -.|.....||.-..++.-.|+.++|++-+++.
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKA 103 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence 3444555555555555443 23334444555455555555555555444433
No 236
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.50 E-value=0.46 Score=40.77 Aligned_cols=219 Identities=18% Similarity=0.051 Sum_probs=120.2
Q ss_pred CChHHHHHHHHHHHHcCccc-ChhhHHHHHHHHhccCChHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHhcCChHHHHH
Q 011249 224 GYAKAAIEMYKVMRQENVRI-SEVAMVGAISACTQLGDVEMAAILAKHVDEG-CCDRTNYVSNALIHMHSKCGYLDLAWR 301 (490)
Q Consensus 224 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~ 301 (490)
+....+...+.......... ....+......+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555555555555432221 2455556666666777777777766666542 223444555555666666666777777
Q ss_pred HHhcccC--CCh-hHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCC----cHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 011249 302 EFSRIKN--KDV-ISYSSMIT-AFADHGKSQEALDMFLKMRNEGIEP----NQVTFIGVLTACSHGGLVEDGCKQFELMT 373 (490)
Q Consensus 302 ~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 373 (490)
.+..... ++. ........ .+...|+++.+...+.+... ..| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7766654 221 22222223 56667777777777777644 222 22233333333555666777777776666
Q ss_pred HHcCCCC-CchHHHHHHHHHhhcCChHHHHHHHHhcc-CCCC-hhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 374 RVFGIKP-LTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCD-AGTWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 374 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
. ..+. ....+..+...+...+++++|...+.... ..|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 195 ~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 K--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 5 2333 34555566666666666666666665554 2222 233333444444555566666666666666665
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.48 E-value=0.022 Score=48.69 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=75.6
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcc-CCC----ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC---CchHHHHH
Q 011249 384 HLTCMVDLLGRSGQLEKAHSLIMDYK-DFC----DAGTWGALLGACKVHVNAELGEIAARHLLELGPEK---TGNSALLA 455 (490)
Q Consensus 384 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 455 (490)
.|+.-+. +...|++.+|...|.... .-| .+..+--|..++...|+++.|..+|..+.+..|++ |+.+.-|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4665444 456788999999998776 222 33455568899999999999999999999977665 56788999
Q ss_pred HHHHhcCCcchHHHHHHHhhhcc
Q 011249 456 NIYASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~~~~~ 478 (490)
.+..+.|+.++|..+++++.+.=
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 99999999999999999988653
No 238
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.47 E-value=0.05 Score=43.08 Aligned_cols=71 Identities=11% Similarity=0.027 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHH-----hcCCCCchhHH
Q 011249 212 CWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVD-----EGCCDRTNYVS 283 (490)
Q Consensus 212 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~ 283 (490)
....++..+...|++++|+.+++.+.... +.+...+..++.++...|+...|.+.|+.+. +.|++|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44456666777788888888887777654 3366777778888888888888877777653 34667766543
No 239
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.44 E-value=0.92 Score=43.53 Aligned_cols=108 Identities=12% Similarity=0.225 Sum_probs=67.8
Q ss_pred CHHHHHHHHhhcCC--CCHh-HHHHHHHHHHhCCChHHHHHHHHHhccC---CchhHHHHHHHHH-hcCChhHHHHHHhh
Q 011249 132 LMDDAQRLFDSMAE--RNVI-SWSAMVAGYANCGNMKAAKEFYDRMTEK---NSVTWVAMIAGYG-KCGEVREAKKVFDE 204 (490)
Q Consensus 132 ~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~-~~~~~~~A~~~~~~ 204 (490)
+++.+..++..+.. |... -|......-.+.|..+.+.++|++.+.. +...|.....-+. ..|+.+...+.|+.
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 34555666666654 4443 3455555666777888888888877753 4444444443332 35666667777766
Q ss_pred cCC------CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011249 205 ISE------PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQE 239 (490)
Q Consensus 205 ~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (490)
... .+...|...|..-...+++.....+|++..+.
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 654 44556777777777777788888888777754
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.12 Score=45.53 Aligned_cols=113 Identities=12% Similarity=-0.042 Sum_probs=47.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHH----HHHHHHhhcCChH
Q 011249 324 HGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLT----CMVDLLGRSGQLE 399 (490)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~ 399 (490)
.|++.+|...|+++.+. .+.|...+...-.+|...|+.+.-...++++.. ...++...|. .+..++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34444444445444443 233333444444444445555444444444443 2233332222 2222333455555
Q ss_pred HHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHH
Q 011249 400 KAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARH 439 (490)
Q Consensus 400 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (490)
+|++.-++.. .+.|...-.++...+...|+..++.++..+
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 5555544443 122233333344444444555555444443
No 241
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.38 E-value=0.4 Score=42.79 Aligned_cols=122 Identities=15% Similarity=0.020 Sum_probs=53.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcC-----CCCchhHHHHHHHHHHhcCChHHHHHHHhcccC-------CChh------
Q 011249 251 AISACTQLGDVEMAAILAKHVDEGC-----CDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN-------KDVI------ 312 (490)
Q Consensus 251 l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~------ 312 (490)
+..++...+.++++.+.|+...+.- ......++..|...|....++++|.-+..+..+ .|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444444455555555554443221 011234455555555555555555443333221 1111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCcH-HHHHHHHHHhcCCCChHHHHHHHHHH
Q 011249 313 SYSSMITAFADHGKSQEALDMFLKMRN----EGIEPNQ-VTFIGVLTACSHGGLVEDGCKQFELM 372 (490)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 372 (490)
....|.-++...|+.-.|.+.-++..+ .|-+|.. .....+.+.|...|+.+.|..-|+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 111223344455555555554444332 2322221 23444555566666666665555544
No 242
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.38 E-value=0.67 Score=41.32 Aligned_cols=99 Identities=8% Similarity=-0.054 Sum_probs=44.6
Q ss_pred hHHHHHHHHhccCChHH---HHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCC---ChhHHHHHHHH
Q 011249 247 AMVGAISACTQLGDVEM---AAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNK---DVISYSSMITA 320 (490)
Q Consensus 247 ~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~ 320 (490)
++..++.++...+..+. |..+++.+.... +..+.++..-+..+.+.++.+.+.+.+.+|... ....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 44455555555554433 333444443322 222334434455555566666666666665541 22333333333
Q ss_pred HH--hcCChHHHHHHHHHHHHcCCCCcH
Q 011249 321 FA--DHGKSQEALDMFLKMRNEGIEPNQ 346 (490)
Q Consensus 321 ~~--~~~~~~~a~~~~~~~~~~~~~p~~ 346 (490)
+. .......+...+..+....+.|..
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 31 112334455555555543344433
No 243
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.38 E-value=0.2 Score=37.63 Aligned_cols=141 Identities=11% Similarity=0.091 Sum_probs=83.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHH
Q 011249 321 FADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEK 400 (490)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 400 (490)
+.-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+-|.+.+- .....++.+|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc---
Confidence 34567888888888887763 34455666665444444445555555555442221111 112234444444432
Q ss_pred HHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccc
Q 011249 401 AHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKK 480 (490)
Q Consensus 401 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 480 (490)
+....+..+......|.-+.-.+++..+.+.+..+|.++..++.+|.+.|+..++.+++++.-+.|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34445556677788899999999999988766667999999999999999999999999999888863
No 244
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.37 E-value=0.56 Score=40.25 Aligned_cols=215 Identities=19% Similarity=0.077 Sum_probs=107.1
Q ss_pred ChHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHhcCChHHHHHHHhcccC-----CChhHHHHHHHHHHhcCChHHHHHH
Q 011249 260 DVEMAAILAKHVDEGCCD-RTNYVSNALIHMHSKCGYLDLAWREFSRIKN-----KDVISYSSMITAFADHGKSQEALDM 333 (490)
Q Consensus 260 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~ 333 (490)
....+...+......... ............+...+.+..+...+..... .....+......+...+++..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444433211 1234444555555666666666555555431 2334445555555555666666666
Q ss_pred HHHHHHcCCCCcHHHHHHHHH-HhcCCCChHHHHHHHHHHHHHcCC--CCCchHHHHHHHHHhhcCChHHHHHHHHhcc-
Q 011249 334 FLKMRNEGIEPNQVTFIGVLT-ACSHGGLVEDGCKQFELMTRVFGI--KPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK- 409 (490)
Q Consensus 334 ~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 409 (490)
+.........+. ........ .+...|+++.+...+.+.... .. ......+......+...++.+++...+....
T Consensus 118 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 118 LEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666655322221 11111122 455666666666666666331 11 0122223333333455666666666665554
Q ss_pred -CCC-ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 410 -DFC-DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 410 -~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
.+. ....+..+...+...++++.+...+..+....|.....+..++..+...|.++++...+++...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122 2345555555566666666666666666666665444455555555555556666665555443
No 245
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.35 E-value=0.85 Score=42.13 Aligned_cols=127 Identities=12% Similarity=0.020 Sum_probs=86.0
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHhhcCChHHHHHHHHhc-cCCCChhhH-HHHHHHH
Q 011249 348 TFIGVLTACSHGGLVEDGCKQFELMTRVFG-IKPLTEHLTCMVDLLGRSGQLEKAHSLIMDY-KDFCDAGTW-GALLGAC 424 (490)
Q Consensus 348 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~-~~l~~~~ 424 (490)
.|...+..-.+..-++.|..+|-++.+. + ..+++..+++++..++ .|+..-|.++|+.- ...||...| .-.+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3444555555666678888888888885 5 5677778888777554 57788888888643 344555544 4455556
Q ss_pred hhhCChHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 425 KVHVNAELGEIAARHLLELGPE--KTGNSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
...++-+.|..+|+..++.-.. -..+|..++..-..-|+...+..+-++|.+
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 7778888888888877653222 255677777777777887777666666544
No 246
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.29 E-value=0.065 Score=47.57 Aligned_cols=223 Identities=11% Similarity=0.000 Sum_probs=99.1
Q ss_pred HHhcCChHHHHHHHHHHHHcC--cccChhhHHHHHHHHhccCChHHHHHHHHHHHhc--CCCCchh---HHHHHHHHHHh
Q 011249 220 YVQNGYAKAAIEMYKVMRQEN--VRISEVAMVGAISACTQLGDVEMAAILAKHVDEG--CCDRTNY---VSNALIHMHSK 292 (490)
Q Consensus 220 ~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~---~~~~l~~~~~~ 292 (490)
+....+.++|+..+.+-...- ..--..++..+..+.++.|.++++...--..... ....+.. .|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777776655321 1112245556666666777666665443221111 0011111 22223333333
Q ss_pred cCChHHHHHHHhcccC-C-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCC--cHHHHHHHHHHhcCC
Q 011249 293 CGYLDLAWREFSRIKN-K-------DVISYSSMITAFADHGKSQEALDMFLKMRNEG---IEP--NQVTFIGVLTACSHG 359 (490)
Q Consensus 293 ~~~~~~A~~~~~~~~~-~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p--~~~~~~~l~~~~~~~ 359 (490)
.-++.+++.+-+.-.. | ......++..++...+.++++++.|+...+-- -.| ....+..|...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 3333333333222111 1 11223344455555566666666666655411 111 123555566666666
Q ss_pred CChHHHHHHHHHHHHH---cCCCCCchHHH-----HHHHHHhhcCChHHHHHHHHhcc----CCCChh----hHHHHHHH
Q 011249 360 GLVEDGCKQFELMTRV---FGIKPLTEHLT-----CMVDLLGRSGQLEKAHSLIMDYK----DFCDAG----TWGALLGA 423 (490)
Q Consensus 360 g~~~~a~~~~~~~~~~---~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~----~~~~l~~~ 423 (490)
.++++|.-+..+..+- +++..-...|. .|.-++...|+.-.|.+..++.. ...|.. ....+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 6666666555544331 12222222222 22334445555555555544332 122222 23344455
Q ss_pred HhhhCChHHHHHHHHHHHh
Q 011249 424 CKVHVNAELGEIAARHLLE 442 (490)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~ 442 (490)
|...|+.|.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 5666666666666665555
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.053 Score=47.54 Aligned_cols=116 Identities=11% Similarity=-0.028 Sum_probs=93.8
Q ss_pred cCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCC--CChh----hHHHHHHHHhhhCCh
Q 011249 357 SHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDF--CDAG----TWGALLGACKVHVNA 430 (490)
Q Consensus 357 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~l~~~~~~~g~~ 430 (490)
...|+..+|-..|+++.+ ..|.|.-.+...-+++.-.|+.+.-...++++..+ ++.+ +-..+..++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 346888888899999998 57777777777778888899998888888887722 3433 334455566789999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHh
Q 011249 431 ELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMI 474 (490)
Q Consensus 431 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (490)
++|++..+++.+++|.|.-+...++-++...|+..++.+++.+-
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99999999999999999998889999999999999998887653
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=96.15 E-value=0.3 Score=45.57 Aligned_cols=143 Identities=10% Similarity=-0.062 Sum_probs=92.7
Q ss_pred ChHHHHHHHhccc---CCC---hhHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCC
Q 011249 295 YLDLAWREFSRIK---NKD---VISYSSMITAFADH---------GKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHG 359 (490)
Q Consensus 295 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 359 (490)
..+.|..+|.+.. +-| ...|..+..++... ....+|.++.++.++.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567888898887 433 45565555544322 23456777777777753 34667777777777777
Q ss_pred CChHHHHHHHHHHHHHcCCCCC-chHHHHHHHHHhhcCChHHHHHHHHh-ccCCCChh---hHHHHHHHHhhhCChHHHH
Q 011249 360 GLVEDGCKQFELMTRVFGIKPL-TEHLTCMVDLLGRSGQLEKAHSLIMD-YKDFCDAG---TWGALLGACKVHVNAELGE 434 (490)
Q Consensus 360 g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~---~~~~l~~~~~~~g~~~~a~ 434 (490)
++.+.|...|++... +.|+ ...|........-.|+.++|.+.+++ +...|... +....+..|. ....+.|+
T Consensus 352 ~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhH
Confidence 889999999999975 4454 55566666667778999999999988 44444332 2222222343 34567777
Q ss_pred HHHHHHHh
Q 011249 435 IAARHLLE 442 (490)
Q Consensus 435 ~~~~~~~~ 442 (490)
.+|-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 77765444
No 249
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.15 E-value=0.015 Score=32.39 Aligned_cols=32 Identities=28% Similarity=0.149 Sum_probs=23.2
Q ss_pred hHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC
Q 011249 416 TWGALLGACKVHVNAELGEIAARHLLELGPEK 447 (490)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 447 (490)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666777777888888888888888877764
No 250
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.15 E-value=0.036 Score=51.31 Aligned_cols=62 Identities=15% Similarity=0.038 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCc----hHHHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 345 NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLT----EHLTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
+...+..+..+|...|++++|+..|++..+ +.|+. ..|..+..+|...|+.++|++.+++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345677777777777777777777777765 24443 236777777777777777777777665
No 251
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.14 E-value=0.01 Score=33.05 Aligned_cols=32 Identities=22% Similarity=0.063 Sum_probs=24.5
Q ss_pred hhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 415 GTWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
.+|..+...+...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677777888888888888888888888876
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.08 E-value=0.79 Score=39.18 Aligned_cols=55 Identities=13% Similarity=0.074 Sum_probs=39.9
Q ss_pred HHHHHhhhCChHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCCcchHHHHHHHh
Q 011249 420 LLGACKVHVNAELGEIAARHLLELGPEKTG---NSALLANIYASMGKWKDSEIVKMMI 474 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (490)
+..-|.+.|.+..|..-++.+++..|+.+. .+..+..+|...|-.++|.+.-+-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 345677888888888888888887666443 5556677788888888888766544
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.77 Score=40.04 Aligned_cols=149 Identities=13% Similarity=0.048 Sum_probs=93.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChH
Q 011249 320 AFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLE 399 (490)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 399 (490)
.....|++.+|..+|....... .-+......+..+|...|+.+.|..++..+..+ --.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 4556778888888888877642 223445666777788888888888888776542 11111111122344455555555
Q ss_pred HHHHHHHhccCCC-ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCcchHHHH
Q 011249 400 KAHSLIMDYKDFC-DAGTWGALLGACKVHVNAELGEIAARHLLELG--PEKTGNSALLANIYASMGKWKDSEIV 470 (490)
Q Consensus 400 ~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (490)
+...+-.++...| |...-..+...+...|+.+.|.+.+-.+++.+ -++...-..+..++.-.|.-+.+-..
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~ 294 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLA 294 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHH
Confidence 5555555544333 56666677777888888888888877777654 45667777787777777755544333
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.04 E-value=0.39 Score=45.65 Aligned_cols=155 Identities=16% Similarity=0.137 Sum_probs=104.2
Q ss_pred HHhcCCHHHHHHHHh--hcCC-CCHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHh
Q 011249 127 YTKIGLMDDAQRLFD--SMAE-RNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFD 203 (490)
Q Consensus 127 ~~~~g~~~~A~~~~~--~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 203 (490)
..-.|+++++.++.+ ++.. -.....+.++.-+.+.|..+.|+++-.. + ..-.+...+.|+++.|.++.+
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~ 342 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAK 342 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCC
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHH
Confidence 445688988766665 2221 1345688889999999999999887643 2 234566788999999999887
Q ss_pred hcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHH
Q 011249 204 EISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVS 283 (490)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 283 (490)
+.. +...|..|.....+.|+++-|.+.|.+... +..|+-.|.-.|+.+...++.+.....| . +
T Consensus 343 ~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~ 405 (443)
T PF04053_consen 343 ELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----I 405 (443)
T ss_dssp CCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------H
T ss_pred hcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----H
Confidence 765 677999999999999999999999987542 4455666777888888888888777766 2 3
Q ss_pred HHHHHHHHhcCChHHHHHHHhcc
Q 011249 284 NALIHMHSKCGYLDLAWREFSRI 306 (490)
Q Consensus 284 ~~l~~~~~~~~~~~~A~~~~~~~ 306 (490)
+....++.-.|+.++..+++.+.
T Consensus 406 n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 406 NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Confidence 33444555567777777766543
No 255
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.03 E-value=0.02 Score=46.22 Aligned_cols=104 Identities=11% Similarity=-0.036 Sum_probs=67.2
Q ss_pred HHhcCCCChHHHHHHHHHHHHHcCCCCCc-----hHHHHHHHHHhhcCChHHHHHHHHhcc-CCC-ChhhHHHHHHHHhh
Q 011249 354 TACSHGGLVEDGCKQFELMTRVFGIKPLT-----EHLTCMVDLLGRSGQLEKAHSLIMDYK-DFC-DAGTWGALLGACKV 426 (490)
Q Consensus 354 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~ 426 (490)
.-+...|++++|..-|..+.. ..++.. ..|..-.-++.+.+.++.|++-..+.. ..| .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 347788899999988888887 344432 233344456677788888887776555 222 22333333456777
Q ss_pred hCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 011249 427 HVNAELGEIAARHLLELGPEKTGNSALLANIYA 459 (490)
Q Consensus 427 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 459 (490)
...++.|++-|+++++.+|....+....+++--
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 778888888888888888876655555554433
No 256
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.01 E-value=2 Score=43.26 Aligned_cols=315 Identities=10% Similarity=-0.015 Sum_probs=167.4
Q ss_pred HHhcCCHHHHHHHHhhcCCCCHh---HHHHHHHHHHhCCChHHHHHHHHHhcc-C-CchhHHHHHHHHHhcCChhHHHHH
Q 011249 127 YTKIGLMDDAQRLFDSMAERNVI---SWSAMVAGYANCGNMKAAKEFYDRMTE-K-NSVTWVAMIAGYGKCGEVREAKKV 201 (490)
Q Consensus 127 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~ 201 (490)
..+.|++..+.++...+...-.. .|..+..... ...+++...++++-.. | ....-......+.+.+++....++
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~ 121 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLM-NQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAF 121 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccc-cCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHh
Confidence 46778899988888887643222 3333332221 3356666666666543 3 222223445556678888888884
Q ss_pred HhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHH--HHHHHHHhcCC---
Q 011249 202 FDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAA--ILAKHVDEGCC--- 276 (490)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~--~~~~~~~~~~~--- 276 (490)
+..- ..+...-.....+....|+.++|......+-..| ...+..+..++..+.+.|.+.... +-+..+...+-
T Consensus 122 ~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~l 199 (644)
T PRK11619 122 SPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGL 199 (644)
T ss_pred cCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4332 3455556667778888899888877777765554 334556677777776655544322 11222222221
Q ss_pred --------CCc-hhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHH--HhcCChHHHHHHHHHHHHc-CCCC
Q 011249 277 --------DRT-NYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAF--ADHGKSQEALDMFLKMRNE-GIEP 344 (490)
Q Consensus 277 --------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~-~~~p 344 (490)
+++ ......++..+. +...+...+.... ++...-..++.++ ....+.+.|..++...... ++.+
T Consensus 200 A~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~ 275 (644)
T PRK11619 200 VTYLAKQLPADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNE 275 (644)
T ss_pred HHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCH
Confidence 111 111112222221 2222332222221 1211111111122 2345668888888877543 2333
Q ss_pred cHH--HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHH
Q 011249 345 NQV--TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGAL 420 (490)
Q Consensus 345 ~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 420 (490)
... ....+.......+...++...++.... ...+......-+..-.+.++++.+...+..|. ......-.--+
T Consensus 276 ~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~ 352 (644)
T PRK11619 276 DQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQ 352 (644)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHH
Confidence 322 334444333443325566666665543 12344455555666668889998888888887 12223333445
Q ss_pred HHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 011249 421 LGACKVHVNAELGEIAARHLLELGPEKTGNSALLA 455 (490)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 455 (490)
..++...|+.++|...|+++.. + .++|-.|+
T Consensus 353 aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 353 ADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred HHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 6666678999999999998744 2 34555553
No 257
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.98 E-value=0.16 Score=38.15 Aligned_cols=135 Identities=14% Similarity=0.162 Sum_probs=77.5
Q ss_pred HHhcCCHHHHHHHHhhcCC-CCHhHHHHHHHHHHhCCChHHHHHHHHHhccC-Cchh---HHHHHHHHHhcCChhHHHHH
Q 011249 127 YTKIGLMDDAQRLFDSMAE-RNVISWSAMVAGYANCGNMKAAKEFYDRMTEK-NSVT---WVAMIAGYGKCGEVREAKKV 201 (490)
Q Consensus 127 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~l~~~~~~~~~~~~A~~~ 201 (490)
..-.|.+++..++..+... .+..-+|-++--....-+-+-..++++.+-+- |... ...++.+|+..|.
T Consensus 12 ~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~------- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNK------- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT--------
T ss_pred HHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcc-------
Confidence 3456777777777777665 34555665555555555666666666665442 2221 1233444443332
Q ss_pred HhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCC
Q 011249 202 FDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCC 276 (490)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 276 (490)
+......-+......|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++..++.++-+.|+
T Consensus 85 -------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 -------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp ---------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred -------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 22344555667778888888888888877533 66777788888888888888888888888877774
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.94 E-value=0.66 Score=43.53 Aligned_cols=103 Identities=13% Similarity=0.091 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccC--CCCh--hhHHHHH
Q 011249 346 QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKD--FCDA--GTWGALL 421 (490)
Q Consensus 346 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~--~~~~~l~ 421 (490)
...-..+..++.+.|+.++|.+.++++.+.+.......+...|+.++...+.+.++..++.+..+ -|.. ..|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 33445567777899999999999999987533223455667899999999999999999988762 2332 3555544
Q ss_pred HHHhhhCC---------------hHHHHHHHHHHHhcCCCCC
Q 011249 422 GACKVHVN---------------AELGEIAARHLLELGPEKT 448 (490)
Q Consensus 422 ~~~~~~g~---------------~~~a~~~~~~~~~~~p~~~ 448 (490)
-.+...+| -..|.+.+.++.+.+|.-|
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 33332332 2346788899988887654
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.82 E-value=1.6 Score=40.55 Aligned_cols=149 Identities=11% Similarity=-0.036 Sum_probs=76.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC--chH
Q 011249 310 DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP---NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL--TEH 384 (490)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 384 (490)
...+|..++..+.+.|.++.|...+.++...+..+ .+.....-+...-..|+..+|+..++..... ..... ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44567777777888888888888887777643111 2223333344455667778888877777662 11111 111
Q ss_pred HHHHHHHHhhcCChHHHHHH-HHhccCCCChhhHHHHHHHHhh------hCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 011249 385 LTCMVDLLGRSGQLEKAHSL-IMDYKDFCDAGTWGALLGACKV------HVNAELGEIAARHLLELGPEKTGNSALLANI 457 (490)
Q Consensus 385 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 457 (490)
...+...+.. ..+..... ........-...+..+..-+.. .++.+.+...|.++.+..|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 0000000011122222222223 3788889999999999999888888888777
Q ss_pred HHhc
Q 011249 458 YASM 461 (490)
Q Consensus 458 ~~~~ 461 (490)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6654
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.81 E-value=0.34 Score=37.41 Aligned_cols=119 Identities=12% Similarity=0.071 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCC---cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q 011249 315 SSMITAFADHGKSQEALDMFLKMRNEGIEP---NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDL 391 (490)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 391 (490)
-.-.....+.|++++|.+.|+.+... .+. ....-..++.+|.+.+++++|...+++..+.+...|++ -|...+.+
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~g 91 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRG 91 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHH
Confidence 33344455677777777777777764 111 23355666777777777777777777777753334432 23333333
Q ss_pred HhhcCChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCch
Q 011249 392 LGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGN 450 (490)
Q Consensus 392 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 450 (490)
+..-...+.. +..+. ..=...+....|..-|++++...|++..+
T Consensus 92 L~~~~~~~~~---~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 92 LSYYEQDEGS---LQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHhhhH---Hhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 3322222111 11111 00011233568888999999999987643
No 261
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.79 E-value=0.9 Score=37.61 Aligned_cols=162 Identities=12% Similarity=0.084 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHH
Q 011249 310 DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQ-VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCM 388 (490)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 388 (490)
-+.+||-+.--+...|+++.|.+.|+...+. .|.. .+...-.-++.-.|++..|.+-+...-+.-...|-...|..+
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl 175 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL 175 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH
Confidence 3457777777777888888888888887773 3422 222222223445678887777666654421111212222211
Q ss_pred HHHHhhcCChHHHHHHH-HhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHh
Q 011249 389 VDLLGRSGQLEKAHSLI-MDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEK-------TGNSALLANIYAS 460 (490)
Q Consensus 389 ~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~ 460 (490)
-.+.-++.+|..-+ ++.. ..+..-|...+..+.- |... ...+++++.+-..++ ..+|..|+..+..
T Consensus 176 ---~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 176 ---NEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred ---HHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 12334666666544 3333 4454555544443322 2111 122333333322222 3567788888888
Q ss_pred cCCcchHHHHHHHhhhccc
Q 011249 461 MGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 461 ~g~~~~A~~~~~~~~~~~~ 479 (490)
.|+.++|..+|+.....++
T Consensus 250 ~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 250 LGDLDEATALFKLAVANNV 268 (297)
T ss_pred cccHHHHHHHHHHHHHHhH
Confidence 8888888888887665543
No 262
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.64 E-value=0.8 Score=35.84 Aligned_cols=126 Identities=10% Similarity=0.005 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHh
Q 011249 314 YSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLG 393 (490)
Q Consensus 314 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 393 (490)
...++..+...+.+.....+++.+...+ ..+....+.++..|++.+ ..+....++. .++.......++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 3445666666677777777777777665 345556677777776543 2333333331 122233344666777
Q ss_pred hcCChHHHHHHHHhccCCCChhhHHHHHHHHhhh-CChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 011249 394 RSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVH-VNAELGEIAARHLLELGPEKTGNSALLANIYA 459 (490)
Q Consensus 394 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 459 (490)
+.+.++++.-++.++.. +...+..+... ++++.|.+++.+ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 77777777777777651 22222223333 677777777765 335556666665544
No 263
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.64 E-value=0.9 Score=43.24 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=83.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChH
Q 011249 218 VCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLD 297 (490)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 297 (490)
....-.++++.+.+..+.-.-.. ..+......++..+.+.|..+.|.++.. |+.+ -.....+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCHH
Confidence 34445666766655553111000 1123446666666777777777766632 2221 234455677777
Q ss_pred HHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcC
Q 011249 298 LAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFG 377 (490)
Q Consensus 298 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 377 (490)
.|.++.++.. +...|..|.....+.|+++-|++.|++..+ +..|+-.|...|+.+.-.++.+..... |
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~ 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c
Confidence 7777766655 455777777777777777777777776443 344444555667766666665555442 1
Q ss_pred CCCCchHHHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 378 IKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 378 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
-++....++.-.|+.++..+++.+-.
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 13333444555567666666665543
No 264
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.61 E-value=0.19 Score=38.25 Aligned_cols=78 Identities=9% Similarity=0.037 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHH---------------HcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhc-
Q 011249 211 SCWAAMTVCYVQNGYAKAAIEMYKVMR---------------QENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEG- 274 (490)
Q Consensus 211 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 274 (490)
.++..++.++++.|+.+....+++..- .....|+..+..+++.+++..|++..|.++.+.+.+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344555555555555555554444331 1223455555666666666666666666666555332
Q ss_pred CCCCchhHHHHHHH
Q 011249 275 CCDRTNYVSNALIH 288 (490)
Q Consensus 275 ~~~~~~~~~~~l~~ 288 (490)
+++.+..+|..|++
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 34444555555444
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.42 E-value=0.4 Score=44.93 Aligned_cols=67 Identities=12% Similarity=0.054 Sum_probs=38.7
Q ss_pred HHHHHHhhcCChHHHHHHHHhcc-CCC---ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcC-CCCCchHHH
Q 011249 387 CMVDLLGRSGQLEKAHSLIMDYK-DFC---DAGTWGALLGACKVHVNAELGEIAARHLLELG-PEKTGNSAL 453 (490)
Q Consensus 387 ~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~ 453 (490)
.+..++-+.|+.+||++.++++. ..| +..+...|+.++...+.+.++..++.+.-... |.++....+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT 335 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT 335 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence 45555666677777777766664 122 22355566666677777777777766654432 554444433
No 266
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.30 E-value=4.9 Score=45.48 Aligned_cols=307 Identities=10% Similarity=0.030 Sum_probs=164.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHh----ccC--CchhHHHHHHHHHhcCChhHHHHHHhh-cCCCCHHhHHHHHHHHHhcCC
Q 011249 153 AMVAGYANCGNMKAAKEFYDRM----TEK--NSVTWVAMIAGYGKCGEVREAKKVFDE-ISEPDASCWAAMTVCYVQNGY 225 (490)
Q Consensus 153 ~l~~~~~~~~~~~~a~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 225 (490)
.+..+=.+.+.+..|+-.+++- .+. ...-|..+...|...+++|...-+... ...|+. ..-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 3444556677788888888772 221 222344444578888888877766663 322332 234445666788
Q ss_pred hHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHH-HHHHHHhcCChHHHHHHHh
Q 011249 226 AKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNA-LIHMHSKCGYLDLAWREFS 304 (490)
Q Consensus 226 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~ 304 (490)
+..|...|+++.+.+ ++...++..++......|.++...-..+-..... .+....++. =+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 888888888888664 2235677777777777777777666554443332 233333322 2334456667766666555
Q ss_pred cccCCChhHHHHH--HHHHHhcC--ChHHHHHHHHHHHHcCCCCc-------H--HHHHHHHHHhcCCCChHHHHHHHHH
Q 011249 305 RIKNKDVISYSSM--ITAFADHG--KSQEALDMFLKMRNEGIEPN-------Q--VTFIGVLTACSHGGLVEDGCKQFEL 371 (490)
Q Consensus 305 ~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~~~~p~-------~--~~~~~l~~~~~~~g~~~~a~~~~~~ 371 (490)
..+..+|... +....+.. +.-.-.+..+.+.+.-+.|- . ..|..++....- .++-..
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l-------~el~~~ 1612 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL-------LELENS 1612 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH-------HHHHHH
Confidence 3344444433 22222222 11111123333332211110 0 122222222110 011111
Q ss_pred HHHHcCCCCCch------HHHHHHHHHhhcCChHHHHHH---HHhc------c---CCCChhhHHHHHHHHhhhCChHHH
Q 011249 372 MTRVFGIKPLTE------HLTCMVDLLGRSGQLEKAHSL---IMDY------K---DFCDAGTWGALLGACKVHVNAELG 433 (490)
Q Consensus 372 ~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~---~~~~------~---~~~~~~~~~~l~~~~~~~g~~~~a 433 (490)
.....+..++.. .|..-+. +.+..-.+.+- +++. . ...-..+|-..++.+...|.++.|
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~---~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLE---RTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHH---HhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 111112233221 1211111 11111112221 1111 1 122356888888999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 434 EIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 434 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
...+-++.+.. -+.++...+..+...|+...|+.++++..+...
T Consensus 1690 ~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1690 QNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 99998888876 467888999999999999999999998876543
No 267
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.28 E-value=0.67 Score=44.75 Aligned_cols=109 Identities=20% Similarity=0.206 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHhcc--CCchhHHH-HHHHHHhcCChhHHHHHHhhcCC-------CCHHhHHHHHHHHHhcCChHHHHHH
Q 011249 163 NMKAAKEFYDRMTE--KNSVTWVA-MIAGYGKCGEVREAKKVFDEISE-------PDASCWAAMTVCYVQNGYAKAAIEM 232 (490)
Q Consensus 163 ~~~~a~~~~~~~~~--~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~ 232 (490)
+.+.|.++++.+.+ |+...|.. -.+.+...|++++|++.|++... .....+--++.++.-..+|++|.+.
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 34445555555444 33333322 23344445555555555554322 1222344455566666777777777
Q ss_pred HHHHHHcCcccChhhHHHHHHH-HhccCCh-------HHHHHHHHHHH
Q 011249 233 YKVMRQENVRISEVAMVGAISA-CTQLGDV-------EMAAILAKHVD 272 (490)
Q Consensus 233 ~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-------~~a~~~~~~~~ 272 (490)
|..+.+.. .-+..+|.-+..+ +...|+. ++|..++.++.
T Consensus 328 f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 328 FLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 77776542 2233333333333 3345555 66666666653
No 268
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=1.7 Score=36.73 Aligned_cols=196 Identities=12% Similarity=0.063 Sum_probs=86.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhccC--CchhHHHHHHHHHhcCChhHHHHHHhhcCCC--CHHhHHHHHHHHHhcCCh
Q 011249 151 WSAMVAGYANCGNMKAAKEFYDRMTEK--NSVTWVAMIAGYGKCGEVREAKKVFDEISEP--DASCWAAMTVCYVQNGYA 226 (490)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 226 (490)
|.....+|....++++|...+.+..+- +..++-.-. ..++.|.-+.+++.+- -+..|+--...|...|.+
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAA------KayEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAA------KAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHH------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence 444456666667777777666665421 111111111 1223333333333331 122344445556666666
Q ss_pred HHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhc---C--CCCchhHHHHHHHHHHhcCChHHHHH
Q 011249 227 KAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEG---C--CDRTNYVSNALIHMHSKCGYLDLAWR 301 (490)
Q Consensus 227 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 301 (490)
+.|-..+++.-+. ....+++.|.++|++.... + ...-...+....+.+.+...+++|-.
T Consensus 108 dtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 108 DTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred chHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 6655555544321 1122334444444433211 1 00011122333444555555555544
Q ss_pred HHhcccC--------CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCcHHHHHHHHHHhcCCCChHHHHHHH
Q 011249 302 EFSRIKN--------KDV-ISYSSMITAFADHGKSQEALDMFLKMRNEG---IEPNQVTFIGVLTACSHGGLVEDGCKQF 369 (490)
Q Consensus 302 ~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 369 (490)
.|.+-.. ++. ..|-..|-.+....++..|.+.++.--+.+ -+-+..+...|+.+|- .|+.+++.+++
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 4433221 111 234444555555667777777777644322 1123346666666663 45665554443
No 269
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.11 E-value=2.7 Score=44.01 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=83.9
Q ss_pred CCHHHHHHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhcCCCCH
Q 011249 131 GLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDA 210 (490)
Q Consensus 131 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 210 (490)
++++.|+.-+.++. ...|.-.++.--+.|-+.+|+.++.--.+.-...|....+.+.....+++|--.|+...+.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-- 968 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-- 968 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH--
Confidence 34444444443332 2233333444444555555555553222222233444445555566677776666655431
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccCh--hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 011249 211 SCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISE--VAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIH 288 (490)
Q Consensus 211 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 288 (490)
.--+.+|...|+|.+|+.+-.++.... +. .+-..|+.-+...+++-+|-++....... | .-.+.
T Consensus 969 ---ekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ 1034 (1265)
T KOG1920|consen 969 ---EKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVA 1034 (1265)
T ss_pred ---HHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHH
Confidence 223456677778888777776664211 11 11245566667777777777766655432 1 22345
Q ss_pred HHHhcCChHHHHHHHhcccC
Q 011249 289 MHSKCGYLDLAWREFSRIKN 308 (490)
Q Consensus 289 ~~~~~~~~~~A~~~~~~~~~ 308 (490)
.|++...+++|.++......
T Consensus 1035 ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1035 LLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HHhhHhHHHHHHHHHHhccc
Confidence 56666778888777665554
No 270
>PRK09687 putative lyase; Provisional
Probab=95.05 E-value=2.4 Score=37.77 Aligned_cols=19 Identities=11% Similarity=0.109 Sum_probs=8.4
Q ss_pred CCCHhHHHHHHHHHHhCCC
Q 011249 145 ERNVISWSAMVAGYANCGN 163 (490)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~~ 163 (490)
.+|.......+.++...|.
T Consensus 34 d~d~~vR~~A~~aL~~~~~ 52 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG 52 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc
Confidence 3444444444444444443
No 271
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.04 E-value=1.2 Score=36.94 Aligned_cols=34 Identities=9% Similarity=0.045 Sum_probs=20.0
Q ss_pred CCCCceehHHHHHHHHhcCChhHHHHHHHHHHhc
Q 011249 64 KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRL 97 (490)
Q Consensus 64 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 97 (490)
.|+.+..||.|.--+...|+++.|.+.|+...+.
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 4554455666666666666666666666655554
No 272
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.04 E-value=1.8 Score=37.14 Aligned_cols=148 Identities=16% Similarity=0.208 Sum_probs=89.5
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC-------C--CHhH
Q 011249 80 LHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE-------R--NVIS 150 (490)
Q Consensus 80 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~ 150 (490)
+..++++|+.-|++..+..-.-....|.++-. ++..+.+.|++++....+.++.. + +..+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQ-----------miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKs 107 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQ-----------MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKS 107 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHH-----------HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 44588999999988887643334444443322 45567788888888887777753 1 3345
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhcc-----CCch----hHHHHHHHHHhcCChhHHHHHHhhcCC--------------
Q 011249 151 WSAMVAGYANCGNMKAAKEFYDRMTE-----KNSV----TWVAMIAGYGKCGEVREAKKVFDEISE-------------- 207 (490)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------- 207 (490)
.|.++..-....+.+-...+|+.-.+ .|.. |-..+...|...+.+....+++.++.+
T Consensus 108 IN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKG 187 (440)
T KOG1464|consen 108 INSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKG 187 (440)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhcc
Confidence 66677666666666555555554332 1222 234566677777777666666666532
Q ss_pred -CCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011249 208 -PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQ 238 (490)
Q Consensus 208 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 238 (490)
.-...|..-|..|....+-..-..+|++...
T Consensus 188 tQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 188 TQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred chhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 1123556666666666666666666766553
No 273
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.04 E-value=0.19 Score=37.67 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=36.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011249 320 AFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRV 375 (490)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 375 (490)
+....|+.+.|++.|.+.+.. .+-....|+.-..++.-+|+.++|+.-+.+..+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 456667777777777776663 2234566777777777777777777777766663
No 274
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=4.3 Score=40.48 Aligned_cols=150 Identities=10% Similarity=0.111 Sum_probs=82.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHH
Q 011249 74 LIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSA 153 (490)
Q Consensus 74 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 153 (490)
-+..+.+.+.+++|+..-+.-... .|...+-. .....+..+.-.|++++|-...-.|...+..-|..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~k-----------v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~ 428 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKK-----------VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWEL 428 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHH-----------HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHH
Confidence 345566788888888877654332 33211100 00224445677788888888888888888777777
Q ss_pred HHHHHHhCCChHHHHHHHHHhcc-CCchhHHHHHHHHHhcCChhHHHHHHh--------------hcCC------CCHHh
Q 011249 154 MVAGYANCGNMKAAKEFYDRMTE-KNSVTWVAMIAGYGKCGEVREAKKVFD--------------EISE------PDASC 212 (490)
Q Consensus 154 l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~--------------~~~~------~~~~~ 212 (490)
.+..+...++......++=.-.. -++..|..++..+.. .+...-.+... .... .+...
T Consensus 429 ~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L 507 (846)
T KOG2066|consen 429 WVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTAL 507 (846)
T ss_pred HHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhH
Confidence 77777777766554443321111 144556555555544 11111111111 1100 12233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 011249 213 WAAMTVCYVQNGYAKAAIEMYKVMR 237 (490)
Q Consensus 213 ~~~l~~~~~~~g~~~~A~~~~~~~~ 237 (490)
-..|+..|...+++..|+..+-.++
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhcc
Confidence 3447777777777777777776654
No 275
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.82 E-value=0.18 Score=38.97 Aligned_cols=72 Identities=17% Similarity=-0.005 Sum_probs=42.5
Q ss_pred hcCChHHHHHHHHhcc-CCCChhhHHH-HHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcc
Q 011249 394 RSGQLEKAHSLIMDYK-DFCDAGTWGA-LLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWK 465 (490)
Q Consensus 394 ~~g~~~~A~~~~~~~~-~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 465 (490)
..++++++..+++.+. ..|+...... -...+...|++++|.++++.+.+..|..+..-..++.++.-.|+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 4667777777776665 3333322211 2234566777777777777777766665555555565666666533
No 276
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.74 E-value=0.059 Score=29.86 Aligned_cols=31 Identities=19% Similarity=0.062 Sum_probs=22.2
Q ss_pred hHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 416 TWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
+|..+...+...|++++|.+.|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666777777777777777777777764
No 277
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.69 E-value=1.7 Score=40.33 Aligned_cols=65 Identities=17% Similarity=0.079 Sum_probs=50.8
Q ss_pred CChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCC----CCCchHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 412 CDAGTWGALLGACKVHVNAELGEIAARHLLELGP----EKTGNSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
....+|..++..+.+.|.++.|...+.++...++ ..+.+...-+..+...|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456778888888888999888888888887552 2466777778888888888888888887776
No 278
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.58 E-value=0.54 Score=40.50 Aligned_cols=98 Identities=19% Similarity=0.286 Sum_probs=70.8
Q ss_pred HHHHhccc--CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCC------------
Q 011249 300 WREFSRIK--NKDVISYSSMITAFADH-----GKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGG------------ 360 (490)
Q Consensus 300 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------------ 360 (490)
+..|..+. ++|-.+|...+..+... +..+-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555554 35666777777766543 456667777888888888888888888888765432
Q ss_pred ----ChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCCh
Q 011249 361 ----LVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQL 398 (490)
Q Consensus 361 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 398 (490)
+-+-+++++++|.. +|+.||.++-..++.++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 22447788888888 69999988888888888877753
No 279
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.51 E-value=6.3 Score=40.13 Aligned_cols=193 Identities=14% Similarity=0.071 Sum_probs=91.1
Q ss_pred HhcCChHHHHHHHhcccC----CCh-------hHHHHHHH-HHHhcCChHHHHHHHHHHHHc----CCCCcHHHHHHHHH
Q 011249 291 SKCGYLDLAWREFSRIKN----KDV-------ISYSSMIT-AFADHGKSQEALDMFLKMRNE----GIEPNQVTFIGVLT 354 (490)
Q Consensus 291 ~~~~~~~~A~~~~~~~~~----~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~ 354 (490)
....++++|..++.++.. |+. ..|+.+-. .....|++++++++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 345666676666655432 211 13333322 233456777777777766542 11223344555555
Q ss_pred HhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHH-----HHHHhhcCCh--HHHHHHHHhcc-----CCC----ChhhHH
Q 011249 355 ACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCM-----VDLLGRSGQL--EKAHSLIMDYK-----DFC----DAGTWG 418 (490)
Q Consensus 355 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~--~~A~~~~~~~~-----~~~----~~~~~~ 418 (490)
+..-.|++++|..+.+...+. .-.-+...+... ...+...|+. .+....|.... .+| -..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 666677777777777666553 222333332221 1234455522 22222232222 111 122333
Q ss_pred HHHHHHhhhCChHHHHHHHHHHHh----cCCCCCc---hHHHHHHHHHhcCCcchHHHHHHHhhhcccccCCCccc
Q 011249 419 ALLGACKVHVNAELGEIAARHLLE----LGPEKTG---NSALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSW 487 (490)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 487 (490)
.+..++.+ .+.+..-.....+ ..|.... .+..|+.++...|+.++|...++.+........+...|
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 34444433 3333333333333 2222211 22356777777777777777777776554444344333
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.41 E-value=0.071 Score=30.14 Aligned_cols=24 Identities=8% Similarity=-0.158 Sum_probs=11.8
Q ss_pred HHHHHHHHhhhCChHHHHHHHHHH
Q 011249 417 WGALLGACKVHVNAELGEIAARHL 440 (490)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~ 440 (490)
|..|...|...|++++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455555555555555555553
No 281
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.38 E-value=0.55 Score=40.47 Aligned_cols=88 Identities=9% Similarity=0.102 Sum_probs=54.6
Q ss_pred CCHHhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccC----------------ChHHHHH
Q 011249 208 PDASCWAAMTVCYVQ-----NGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLG----------------DVEMAAI 266 (490)
Q Consensus 208 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----------------~~~~a~~ 266 (490)
.|-.+|...+..+.. .+..+-....++.|.+-|+.-|..+|..|++.+-+.. +-.-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 444555555544433 2344555555666666676667777777666654422 2345677
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 011249 267 LAKHVDEGCCDRTNYVSNALIHMHSKCGY 295 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 295 (490)
++++|...|+.||-.+-..|++++.+.+-
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 77788888888887777777777776654
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.31 E-value=0.7 Score=36.71 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=51.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHH-----HHHHhhcC
Q 011249 323 DHGKSQEALDMFLKMRNEGIEPNQV-TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCM-----VDLLGRSG 396 (490)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g 396 (490)
+.+..++|+.-|..+.+.|...=+. .-..........|+...|...|+++-.. . |.+.....+ ...+...|
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t--~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-T--SIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-C--CCcchhhHHHHHHHHHHHhccc
Confidence 3445555555555555543221111 1111122234555555566666555443 1 111111111 12334555
Q ss_pred ChHHHHHHHHhccCCCC---hhhHHHHHHHHhhhCChHHHHHHHHHHHh
Q 011249 397 QLEKAHSLIMDYKDFCD---AGTWGALLGACKVHVNAELGEIAARHLLE 442 (490)
Q Consensus 397 ~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (490)
.++......+.+....+ ...-..|.-+-.+.|++.+|...|+++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66665555555542111 12223444445566666666666666554
No 283
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.31 E-value=2.5 Score=34.58 Aligned_cols=84 Identities=12% Similarity=0.053 Sum_probs=42.3
Q ss_pred HHHHhCCChHHHHHHHHHhcc-CCchh-----HHHHHHHHHhcCChhHHHHHHhhcCCCCHHh--HHHHHHHHHhcCChH
Q 011249 156 AGYANCGNMKAAKEFYDRMTE-KNSVT-----WVAMIAGYGKCGEVREAKKVFDEISEPDASC--WAAMTVCYVQNGYAK 227 (490)
Q Consensus 156 ~~~~~~~~~~~a~~~~~~~~~-~~~~~-----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~ 227 (490)
..+...|++++|..-++.... +.... -..|.+.....|.+|+|++.++....++-.. ...-.+.+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 345556666666666665552 21111 2233444555566666666665555543222 233344555556666
Q ss_pred HHHHHHHHHHHc
Q 011249 228 AAIEMYKVMRQE 239 (490)
Q Consensus 228 ~A~~~~~~~~~~ 239 (490)
+|..-|++....
T Consensus 177 ~Ar~ay~kAl~~ 188 (207)
T COG2976 177 EARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHc
Confidence 666655555544
No 284
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.27 E-value=0.58 Score=38.12 Aligned_cols=88 Identities=10% Similarity=0.053 Sum_probs=54.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC-chHHHHHHHH
Q 011249 318 ITAFADHGKSQEALDMFLKMRNEGIEPNQ-----VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL-TEHLTCMVDL 391 (490)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 391 (490)
..-+...|++++|..-|..+++. +++.. ..|..-..++.+.+.++.|+.-..+..+ +.|+ ......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHH
Confidence 33466778888888888888774 23222 2344444456677777777777766665 2222 2222233457
Q ss_pred HhhcCChHHHHHHHHhcc
Q 011249 392 LGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 392 ~~~~g~~~~A~~~~~~~~ 409 (490)
|.+...+++|++-|+++.
T Consensus 178 yek~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKIL 195 (271)
T ss_pred HHhhhhHHHHHHHHHHHH
Confidence 777788888888887776
No 285
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.20 E-value=1.4 Score=36.00 Aligned_cols=129 Identities=12% Similarity=0.007 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH--HHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHH----
Q 011249 312 ISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFI--GVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHL---- 385 (490)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---- 385 (490)
..|..++.... .+.+ +.....+++........--.+. .+...+...+++++|...++..... |..+.+
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~ 128 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHH
Confidence 34555555543 3333 5555556665532111111222 2334467778888888888777642 222222
Q ss_pred -HHHHHHHhhcCChHHHHHHHHhccCCC-ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 386 -TCMVDLLGRSGQLEKAHSLIMDYKDFC-DAGTWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 386 -~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
..|.+.....|.+|+|+..++....+. .......-...+...|+-++|...|+++++.+++
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 235566777788888888877766221 2223333446677778888888888888877643
No 286
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.15 E-value=7.2 Score=39.38 Aligned_cols=82 Identities=10% Similarity=-0.015 Sum_probs=37.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHH
Q 011249 219 CYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDL 298 (490)
Q Consensus 219 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 298 (490)
-+.+.|++++|...|-+-+.. +.|+ .++.-+.......+-..+++.+.+.|+ .+...-..|+.+|.+.++.++
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHH
Confidence 344455555555555444321 1111 122333344444444455555555553 223333445555555555555
Q ss_pred HHHHHhccc
Q 011249 299 AWREFSRIK 307 (490)
Q Consensus 299 A~~~~~~~~ 307 (490)
-.++.+...
T Consensus 450 L~efI~~~~ 458 (933)
T KOG2114|consen 450 LTEFISKCD 458 (933)
T ss_pred HHHHHhcCC
Confidence 555554444
No 287
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.14 E-value=0.9 Score=36.13 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=10.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 011249 317 MITAFADHGKSQEALDMFLKMRN 339 (490)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~ 339 (490)
|.-+-.+.|++.+|.+.|..+..
T Consensus 173 LglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 173 LGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhHHHHhccchHHHHHHHHHHHc
Confidence 33333444444444444444443
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.11 E-value=0.069 Score=30.19 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 450 NSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
++..|+.+|.+.|+|++|++++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478899999999999999999998553
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.08 E-value=0.29 Score=38.53 Aligned_cols=83 Identities=19% Similarity=0.050 Sum_probs=58.7
Q ss_pred hHHHHHHHHH---hhcCChHHHHHHHHhcc-CCCChhhHHH-HHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 011249 383 EHLTCMVDLL---GRSGQLEKAHSLIMDYK-DFCDAGTWGA-LLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANI 457 (490)
Q Consensus 383 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 457 (490)
.+.+.|+... .+.++.+++..++..+. ..|....... -...+...|++.+|+++++.+.+..|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3445555443 46788999999988877 4454443322 23457788999999999999888888888777777777
Q ss_pred HHhcCCcc
Q 011249 458 YASMGKWK 465 (490)
Q Consensus 458 ~~~~g~~~ 465 (490)
+...|+.+
T Consensus 88 L~~~~D~~ 95 (160)
T PF09613_consen 88 LYALGDPS 95 (160)
T ss_pred HHHcCChH
Confidence 77777644
No 290
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.96 E-value=0.21 Score=44.05 Aligned_cols=96 Identities=9% Similarity=-0.057 Sum_probs=60.8
Q ss_pred HhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHH
Q 011249 355 ACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAEL 432 (490)
Q Consensus 355 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 432 (490)
-|.++|.+++|+..|..... -.+.++.++..-..+|.+..++..|..-..... ...-...|..-+.+-...|+..+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 36677777777777776654 233366666666677777777776666555444 12223344444455556677888
Q ss_pred HHHHHHHHHhcCCCCCchHH
Q 011249 433 GEIAARHLLELGPEKTGNSA 452 (490)
Q Consensus 433 a~~~~~~~~~~~p~~~~~~~ 452 (490)
|.+-++.++++.|++...-.
T Consensus 184 AKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 184 AKKDCETVLALEPKNIELKK 203 (536)
T ss_pred HHHhHHHHHhhCcccHHHHH
Confidence 88888888888888655333
No 291
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.90 E-value=0.21 Score=29.71 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011249 212 CWAAMTVCYVQNGYAKAAIEMYKVMRQE 239 (490)
Q Consensus 212 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (490)
++..+...|...|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555566666666666666665554
No 292
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.89 E-value=3.5 Score=34.79 Aligned_cols=17 Identities=0% Similarity=-0.292 Sum_probs=8.8
Q ss_pred hhCChHHHHHHHHHHHh
Q 011249 426 VHVNAELGEIAARHLLE 442 (490)
Q Consensus 426 ~~g~~~~a~~~~~~~~~ 442 (490)
..+++.+|+.+|+++..
T Consensus 166 ~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555544
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.87 E-value=1.5 Score=35.96 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH--HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHH--HH
Q 011249 313 SYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQV--TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLT--CM 388 (490)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 388 (490)
.+..+...|.+.|+.+.|.+.|.++.+....|... .+..+++.....+++..+...+.++........+...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 55667777777888888888888877754444433 556667777777788777777777765311111111111 11
Q ss_pred --HHHHhhcCChHHHHHHHHhcc
Q 011249 389 --VDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 389 --~~~~~~~g~~~~A~~~~~~~~ 409 (490)
.-.+...+++.+|-+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 122345677888777775554
No 294
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.75 E-value=5.9 Score=36.99 Aligned_cols=128 Identities=9% Similarity=0.102 Sum_probs=81.9
Q ss_pred HHhcCCHHHHHHHHhhcCCC---C------HhHHHHHHHHHHhCCChHHHHHHHHHhccC-CchhHHHHHHH--HHhcCC
Q 011249 127 YTKIGLMDDAQRLFDSMAER---N------VISWSAMVAGYANCGNMKAAKEFYDRMTEK-NSVTWVAMIAG--YGKCGE 194 (490)
Q Consensus 127 ~~~~g~~~~A~~~~~~~~~~---~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~--~~~~~~ 194 (490)
+-+.+++.+|..+|.++.+. + ...-+.++++|.. ++.+.....+....+. ....|..+..+ +-+.++
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 56789999999999988752 2 2234556677764 4555555555555432 23344444443 346788
Q ss_pred hhHHHHHHhhcCC------------------CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCc----ccChhhHHHHH
Q 011249 195 VREAKKVFDEISE------------------PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENV----RISEVAMVGAI 252 (490)
Q Consensus 195 ~~~A~~~~~~~~~------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~ 252 (490)
+++|.+.+..-.. +|-..=+..+.++...|++.++..+++++...=. .-+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 8888887754321 2223345677889999999999999999876433 35677777754
Q ss_pred HHH
Q 011249 253 SAC 255 (490)
Q Consensus 253 ~~~ 255 (490)
-.+
T Consensus 175 lml 177 (549)
T PF07079_consen 175 LML 177 (549)
T ss_pred HHH
Confidence 443
No 295
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.75 E-value=0.91 Score=42.24 Aligned_cols=121 Identities=18% Similarity=0.188 Sum_probs=75.5
Q ss_pred HhcCChHHHHHHHHH-HHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHH
Q 011249 322 ADHGKSQEALDMFLK-MRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEK 400 (490)
Q Consensus 322 ~~~~~~~~a~~~~~~-~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 400 (490)
...|+...|-+-+.. +....-.|+.......| +...|+++.+.+.+..... -+.....+...+++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 345666666544443 33333345544443333 4567888888888777765 344555666777888888888888
Q ss_pred HHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 401 AHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 401 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
|...-..|. .-.++.+...........|-++++...|+++..++|+
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 888777666 1123334433344455667788888888888887754
No 296
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.72 E-value=5 Score=36.02 Aligned_cols=125 Identities=11% Similarity=0.180 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHh--cC----ChHHHHHHHhcccC-------CChhHHHHHHHHHHhcCC----h
Q 011249 265 AILAKHVDEGCCDRTNYVSNALIHMHSK--CG----YLDLAWREFSRIKN-------KDVISYSSMITAFADHGK----S 327 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~----~ 327 (490)
..+++.+.+.|+..+..+|-+....... .. ....|..+|+.|.+ ++..++..++.. ..++ .
T Consensus 82 ~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~ 159 (297)
T PF13170_consen 82 LDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELA 159 (297)
T ss_pred HHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHH
Confidence 4455555555555555444332222221 11 23455666666665 233444444332 2222 3
Q ss_pred HHHHHHHHHHHHcCCCCcHH--HHHHHHHHhcCCCC--hHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Q 011249 328 QEALDMFLKMRNEGIEPNQV--TFIGVLTACSHGGL--VEDGCKQFELMTRVFGIKPLTEHLTCMVDLL 392 (490)
Q Consensus 328 ~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 392 (490)
+.++.+|+.+.+.|+..+.. ....++..+..... ...+.++++.+.+. ++++....|..++-..
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 56777888888878776543 44444444333222 34778888888885 8888877776654433
No 297
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.68 E-value=0.31 Score=42.59 Aligned_cols=59 Identities=20% Similarity=0.138 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHh
Q 011249 384 HLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLE 442 (490)
Q Consensus 384 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (490)
++..++..+...|+.+.+.+.++++. .+-+...|..++.+|...|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 44555566666666666666665554 333555666666666666666666666665554
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.51 E-value=3.1 Score=32.97 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=10.0
Q ss_pred HHhhcCChHHHHHHHHhcc
Q 011249 391 LLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 391 ~~~~~g~~~~A~~~~~~~~ 409 (490)
.+.+.|++.+|..+|+.+.
T Consensus 53 l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 53 LHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHhCCHHHHHHHHHHHh
Confidence 3445555555555555544
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.44 E-value=0.088 Score=29.10 Aligned_cols=31 Identities=13% Similarity=0.122 Sum_probs=26.3
Q ss_pred chHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 449 GNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
.++..++.++...|++++|++.+++..+..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4688999999999999999999999887543
No 300
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.31 E-value=10 Score=38.30 Aligned_cols=213 Identities=15% Similarity=0.053 Sum_probs=89.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC--C--CH
Q 011249 73 SLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE--R--NV 148 (490)
Q Consensus 73 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~~ 148 (490)
.+|--|.|.|++++|.++....... .......+...+..+...++.. .....-++...-|+...+ + |+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~-------l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRR-------LPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS----------TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCC-------CCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 5677889999999999999665543 4556677788888876643322 122233444455555443 2 44
Q ss_pred h---HHHHHHHHHHhCCChHHH---HHHHHHhc-----cC--------CchhHHHHHHHHHhcCChhHHHHHHhhcCCCC
Q 011249 149 I---SWSAMVAGYANCGNMKAA---KEFYDRMT-----EK--------NSVTWVAMIAGYGKCGEVREAKKVFDEISEPD 209 (490)
Q Consensus 149 ~---~~~~l~~~~~~~~~~~~a---~~~~~~~~-----~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 209 (490)
. .|..+..+=......... .+-|-++. +. +..++..+-....+-|. +.|.. ..+
T Consensus 188 yK~AvY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge-----~~F~~--~~~ 260 (613)
T PF04097_consen 188 YKRAVYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGE-----SHFNA--GSN 260 (613)
T ss_dssp HHHHHHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-G-----GGCTT-----
T ss_pred HHHHHHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhch-----hhccc--chh
Confidence 3 344442211111111111 11111111 00 01122222211111111 11111 112
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCC-CCchhHHHHHHH
Q 011249 210 ASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCC-DRTNYVSNALIH 288 (490)
Q Consensus 210 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 288 (490)
+. .....+.-.|+++.|++++-+ ..+...+.+++...+..+.-.+-.+... ..+..... .+.+.-+..||.
T Consensus 261 p~---~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~ 332 (613)
T PF04097_consen 261 PL---LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIG 332 (613)
T ss_dssp ------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHH
T ss_pred HH---HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHH
Confidence 22 334566778999999998877 2334556666666665554332222211 22211110 111134556777
Q ss_pred HHHh---cCChHHHHHHHhcccC
Q 011249 289 MHSK---CGYLDLAWREFSRIKN 308 (490)
Q Consensus 289 ~~~~---~~~~~~A~~~~~~~~~ 308 (490)
.|.+ ..+..+|.+.|--+..
T Consensus 333 ~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 333 QYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHHHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 7765 3567778887766654
No 301
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.23 E-value=5.9 Score=35.35 Aligned_cols=120 Identities=8% Similarity=-0.004 Sum_probs=52.8
Q ss_pred HhcCChHHHHHHHHHHHHcC--cccChh-----hHHHHHHHHhccC-ChHHHHHHHHHHHhc----C----CCCc-----
Q 011249 221 VQNGYAKAAIEMYKVMRQEN--VRISEV-----AMVGAISACTQLG-DVEMAAILAKHVDEG----C----CDRT----- 279 (490)
Q Consensus 221 ~~~g~~~~A~~~~~~~~~~~--~~p~~~-----~~~~l~~~~~~~g-~~~~a~~~~~~~~~~----~----~~~~----- 279 (490)
.+.|+.+.|...+.+..... ..|+.. .+..+.......+ +++.|..++++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35666666766666665422 122211 1111222223344 666666666554332 1 1111
Q ss_pred hhHHHHHHHHHHhcCChHH---HHHHHhcccC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011249 280 NYVSNALIHMHSKCGYLDL---AWREFSRIKN--KD-VISYSSMITAFADHGKSQEALDMFLKMRNE 340 (490)
Q Consensus 280 ~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (490)
..+...++.+|...+..+. |..+++.+.. ++ +.++..-+..+.+.++.+.+.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 1234445555555544332 3333333322 22 333334444444455555555555555553
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.16 E-value=0.1 Score=28.87 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=26.5
Q ss_pred chHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 449 GNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
.+|..++.+|...|++++|++.+++..+..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4688999999999999999999999887654
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.08 E-value=8.5 Score=40.58 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcC--ChhHHHHHHhhcC
Q 011249 182 WVAMIAGYGKCG--EVREAKKVFDEIS 206 (490)
Q Consensus 182 ~~~l~~~~~~~~--~~~~A~~~~~~~~ 206 (490)
...++..|.+.+ .+++|+....+..
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 345666666665 5555555554444
No 304
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.06 E-value=0.2 Score=27.32 Aligned_cols=27 Identities=11% Similarity=-0.028 Sum_probs=15.1
Q ss_pred HHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 420 LLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
+..++...|++++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344455555666666666665555554
No 305
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.98 E-value=5.4 Score=34.29 Aligned_cols=64 Identities=16% Similarity=0.116 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCc--ccChhhHHHHHHHHhccCChHHHHHHHHHHHhcC
Q 011249 212 CWAAMTVCYVQNGYAKAAIEMYKVMRQENV--RISEVAMVGAISACTQLGDVEMAAILAKHVDEGC 275 (490)
Q Consensus 212 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 275 (490)
.+-.-+..-.+.|++++|.+.|+.+....+ +-...+...++-++.+.++++.|....++..+.-
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 333444455667777777777777765321 1123455556666667777777777777766554
No 306
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.92 E-value=8.7 Score=36.53 Aligned_cols=89 Identities=6% Similarity=0.068 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHhcC
Q 011249 282 VSNALIHMHSKCGYLDLAWREFSRIKN--KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQV-TFIGVLTACSH 358 (490)
Q Consensus 282 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~ 358 (490)
...+++..+.....+.-.+.+..++.. .+-..|..++++|... ..++-..+|+++.+. ..|.. .-..|...|.+
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEk 144 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHHHH
Confidence 333444444444444444444444443 2334455555555544 334455555555542 22222 22222332322
Q ss_pred CCChHHHHHHHHHHHH
Q 011249 359 GGLVEDGCKQFELMTR 374 (490)
Q Consensus 359 ~g~~~~a~~~~~~~~~ 374 (490)
++.+.+..+|.++..
T Consensus 145 -ik~sk~a~~f~Ka~y 159 (711)
T COG1747 145 -IKKSKAAEFFGKALY 159 (711)
T ss_pred -hchhhHHHHHHHHHH
Confidence 445555555555544
No 307
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.75 E-value=11 Score=37.41 Aligned_cols=273 Identities=16% Similarity=0.098 Sum_probs=156.3
Q ss_pred hhHHHHHHhhcCC-CCHHhHHHHHHH-----HHhcCChHHHHHHHHHHHH-------cCcccChhhHHHHHHHHhccC--
Q 011249 195 VREAKKVFDEISE-PDASCWAAMTVC-----YVQNGYAKAAIEMYKVMRQ-------ENVRISEVAMVGAISACTQLG-- 259 (490)
Q Consensus 195 ~~~A~~~~~~~~~-~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~g-- 259 (490)
...|.++++...+ .+...-..+..+ +....+.+.|+.+|+.+.+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4567777777655 333333333333 3345678889988888866 44 3334555666665533
Q ss_pred ---ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh-cCChHHHHHHHhcccC-CChhHHHHHHHHHH----hcCChHHH
Q 011249 260 ---DVEMAAILAKHVDEGCCDRTNYVSNALIHMHSK-CGYLDLAWREFSRIKN-KDVISYSSMITAFA----DHGKSQEA 330 (490)
Q Consensus 260 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~----~~~~~~~a 330 (490)
+.+.|..++....+.| .|+.......+..... ..+...|.++|....+ -.+..+-.+..+|. -..+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 5677888888888887 5555544333333222 2457788888888775 33444433433332 23478888
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHH---hh----cCChHHHHH
Q 011249 331 LDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLL---GR----SGQLEKAHS 403 (490)
Q Consensus 331 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~ 403 (490)
..++.+..+.| .|...--...+..+.. ++++.+.-.+..+... +.+.....-..++... .. ..+.+.+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 88999888877 4432222233333434 6666666666655552 4332221111111111 11 224555666
Q ss_pred HHHhccCCCChhhHHHHHHHHhh----hCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-C--CcchHHHHHHHhhh
Q 011249 404 LIMDYKDFCDAGTWGALLGACKV----HVNAELGEIAARHLLELGPEKTGNSALLANIYASM-G--KWKDSEIVKMMISE 476 (490)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~ 476 (490)
.+.+...+-+......+...|.. ..+++.|...+..+.... +.....++.++..- | ++..|.+++++..+
T Consensus 461 ~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 461 LYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 66665545555555555554433 236888888888888766 66677777766542 1 25677777777665
Q ss_pred c
Q 011249 477 T 477 (490)
Q Consensus 477 ~ 477 (490)
.
T Consensus 538 ~ 538 (552)
T KOG1550|consen 538 E 538 (552)
T ss_pred c
Confidence 4
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.58 E-value=1.1 Score=36.68 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCChhHHHHHHhhcCC------CCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011249 183 VAMIAGYGKCGEVREAKKVFDEISE------PDASCWAAMTVCYVQNGYAKAAIEMYKVMR 237 (490)
Q Consensus 183 ~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 237 (490)
..++..|.+.|+.+.|.+.|.++.+ .-...+-.+|+.....+++..+...+.+..
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444444444444444444444433 112233444555555555555555544443
No 309
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.57 E-value=0.012 Score=46.38 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=42.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHH
Q 011249 251 AISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEA 330 (490)
Q Consensus 251 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 330 (490)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3444555566666666666666555445566666666666666555666655552222 2223344444444555555
Q ss_pred HHHHHH
Q 011249 331 LDMFLK 336 (490)
Q Consensus 331 ~~~~~~ 336 (490)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444443
No 310
>PRK09687 putative lyase; Provisional
Probab=92.49 E-value=7.5 Score=34.66 Aligned_cols=236 Identities=11% Similarity=0.016 Sum_probs=103.7
Q ss_pred cCCchhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCCh----HHHHHHHHHHHHcCcccChhhHHHH
Q 011249 176 EKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYA----KAAIEMYKVMRQENVRISEVAMVGA 251 (490)
Q Consensus 176 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~p~~~~~~~l 251 (490)
.+|.......+..+...|..+-...+..-+..+|+..-...+.++.+.|+. +++...+..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 445555555555555555433222222222334555555555555555542 3455555544322 2344444444
Q ss_pred HHHHhccCChHH--HHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcC-ChH
Q 011249 252 ISACTQLGDVEM--AAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHG-KSQ 328 (490)
Q Consensus 252 ~~~~~~~g~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 328 (490)
+.++...+.... .......+...-..++..+-...+.++.+.++.+....+..-+..++..+-...+.++.+.+ +..
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 444443322110 01112222111112344444455555555555333333333333344444444444444432 133
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhc
Q 011249 329 EALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDY 408 (490)
Q Consensus 329 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 408 (490)
.+...+..+.. .++...-...+.++.+.|+. .+...+-...+. ++ .....+.++...|.. +|...+..+
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 45555555543 34444445555555555553 344444444331 11 223455666666664 566666555
Q ss_pred c-CCCChhhHHHHHHHH
Q 011249 409 K-DFCDAGTWGALLGAC 424 (490)
Q Consensus 409 ~-~~~~~~~~~~l~~~~ 424 (490)
. ..+|..+-...+.+|
T Consensus 261 ~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 261 LYKFDDNEIITKAIDKL 277 (280)
T ss_pred HhhCCChhHHHHHHHHH
Confidence 5 245555555544444
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.46 E-value=0.27 Score=28.61 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=14.9
Q ss_pred hHHHHHHHHhhhCChHHHHHHHHHHHh
Q 011249 416 TWGALLGACKVHVNAELGEIAARHLLE 442 (490)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (490)
+++.+...|...|++++|..+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555556666666666655554
No 312
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.38 E-value=0.28 Score=43.40 Aligned_cols=90 Identities=10% Similarity=-0.086 Sum_probs=75.7
Q ss_pred HHHHhhcCChHHHHHHHHhcc-CCC-ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcch
Q 011249 389 VDLLGRSGQLEKAHSLIMDYK-DFC-DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKD 466 (490)
Q Consensus 389 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 466 (490)
..-|.++|.+++|+..|.... ..| ++.++..-..+|.+...+..|+.-...++.++.....+|+.-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 456889999999999997655 445 888888888999999999999999999999887778888888888888888888
Q ss_pred HHHHHHHhhhcc
Q 011249 467 SEIVKMMISETE 478 (490)
Q Consensus 467 A~~~~~~~~~~~ 478 (490)
|.+-++...+..
T Consensus 184 AKkD~E~vL~LE 195 (536)
T KOG4648|consen 184 AKKDCETVLALE 195 (536)
T ss_pred HHHhHHHHHhhC
Confidence 888777766543
No 313
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.30 E-value=4.4 Score=31.59 Aligned_cols=42 Identities=7% Similarity=0.021 Sum_probs=21.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhc
Q 011249 215 AMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQ 257 (490)
Q Consensus 215 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 257 (490)
.++..+...+.+.....+++.+...+. .+...++.++..+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444445555555555555554442 344455555555544
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.27 E-value=14 Score=37.42 Aligned_cols=54 Identities=15% Similarity=0.026 Sum_probs=37.7
Q ss_pred HHHHHhhcCChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHh
Q 011249 388 MVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLE 442 (490)
Q Consensus 388 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (490)
++..+....+++.+..+.+... +.++..|..++..+.+.+..+.-.+...+.++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g-~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG-KEDPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC-ccChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 5556666777777777777776 44777888888888887766666665555544
No 315
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.21 E-value=1.5 Score=35.28 Aligned_cols=59 Identities=12% Similarity=0.008 Sum_probs=33.9
Q ss_pred ChhhHHHHHHHHhhhC-----------ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcc
Q 011249 413 DAGTWGALLGACKVHV-----------NAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 413 ~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 478 (490)
...++..+..++...+ .+++|.+.|+++...+|++......|- +. .+|-++..++.+.+
T Consensus 68 ~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe-~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 68 KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE-MA------AKAPELHMEIHKQG 137 (186)
T ss_dssp -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH-HH------HTHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH-HH------HhhHHHHHHHHHHH
Confidence 3456666666665433 266777788888888898665444443 32 34566666655554
No 316
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.16 E-value=1.1 Score=39.25 Aligned_cols=75 Identities=15% Similarity=0.229 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCcccChhhHHHH
Q 011249 180 VTWVAMIAGYGKCGEVREAKKVFDEISE---PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQ-----ENVRISEVAMVGA 251 (490)
Q Consensus 180 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 251 (490)
.++..++..+...|+++.+...++++.. -+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3456677777778888888888877765 4667788888888888888888888887765 4666666554444
Q ss_pred HHH
Q 011249 252 ISA 254 (490)
Q Consensus 252 ~~~ 254 (490)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 433
No 317
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.15 E-value=7.1 Score=34.19 Aligned_cols=60 Identities=15% Similarity=0.028 Sum_probs=52.5
Q ss_pred HHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 417 WGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
++.....|...|.+.+|.++.++++..+|-+...+..|...+...|+--.|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344557789999999999999999999999999999999999999998888888777654
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.14 E-value=0.074 Score=41.94 Aligned_cols=129 Identities=10% Similarity=0.101 Sum_probs=65.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHH
Q 011249 73 SLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWS 152 (490)
Q Consensus 73 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 152 (490)
.+++.+.+.+.+......++.+...+...+....+.++. .|++.++.++..++++... ..-..
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~--------------ly~~~~~~~~l~~~L~~~~---~yd~~ 74 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLE--------------LYIKYDPYEKLLEFLKTSN---NYDLD 74 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHH--------------HHHCTTTCCHHHHTTTSSS---SS-CT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHH--------------HHHhcCCchHHHHHccccc---ccCHH
Confidence 356666667777777777777776554444444544444 3666666666666665222 23334
Q ss_pred HHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCC
Q 011249 153 AMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGY 225 (490)
Q Consensus 153 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 225 (490)
.++..|.+.|-++++.-++.++...+.. +..+...++++.|.+++.+. +++..|..++..+...+.
T Consensus 75 ~~~~~c~~~~l~~~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 75 KALRLCEKHGLYEEAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHTTTSHHHHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHhcchHHHHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 4566666666666666655443221000 00012223333333222222 445667777766665544
No 319
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.08 E-value=15 Score=37.19 Aligned_cols=183 Identities=10% Similarity=0.059 Sum_probs=91.8
Q ss_pred CCHhHHHHHHHHHHhCCChHHHHHHHHHhcc-C------CchhHHHHHHHHH-hcCChhHHHHHHhhcCC----CCH---
Q 011249 146 RNVISWSAMVAGYANCGNMKAAKEFYDRMTE-K------NSVTWVAMIAGYG-KCGEVREAKKVFDEISE----PDA--- 210 (490)
Q Consensus 146 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~------~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~----~~~--- 210 (490)
.+...|..||.. |++.++-+.+ . +..++..++..+. ...+++.|+..+++... ++.
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 355677777765 3455555542 1 4556667777666 56778888888876532 111
Q ss_pred --HhHHHHHHHHHhcCChHHHHHHHHHHHHcC----cccChhhHHHH-HHHHhccCChHHHHHHHHHHHhcC---CCCch
Q 011249 211 --SCWAAMTVCYVQNGYAKAAIEMYKVMRQEN----VRISEVAMVGA-ISACTQLGDVEMAAILAKHVDEGC---CDRTN 280 (490)
Q Consensus 211 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~ 280 (490)
..-..++..+.+.+... |...+++.++.- ..+-...|..+ +..+...++...|.+.++.+.... ..+..
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 12234556666666555 877777766431 11122233333 222223367777777777664432 13333
Q ss_pred hHHHHHHHHHH--hcCChHHHHHHHhcccC-------------CChhHHHHHHHH--HHhcCChHHHHHHHHHHH
Q 011249 281 YVSNALIHMHS--KCGYLDLAWREFSRIKN-------------KDVISYSSMITA--FADHGKSQEALDMFLKMR 338 (490)
Q Consensus 281 ~~~~~l~~~~~--~~~~~~~A~~~~~~~~~-------------~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~ 338 (490)
.++..++.+.. ..+..+++.+..+.+.. |...+|..+++. +...|+++.+...++++.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333322 33444445444443311 123344444443 334555555555544443
No 320
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.05 E-value=0.49 Score=38.00 Aligned_cols=49 Identities=16% Similarity=0.122 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC-----------cchHHHHHHHhhhc
Q 011249 429 NAELGEIAARHLLELGPEKTGNSALLANIYASMGK-----------WKDSEIVKMMISET 477 (490)
Q Consensus 429 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~ 477 (490)
.+++|+.-|++++.++|+...++.+++.+|...+. +++|.+.|++..+.
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc
Confidence 45678888888899999999999999999887654 44555555555443
No 321
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.52 E-value=31 Score=39.72 Aligned_cols=306 Identities=8% Similarity=0.022 Sum_probs=158.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhc----CCCC--HhHHHHHHHHHHhCCChHHHHHHHHH-hccCCchhHHHHHHHHHhcCC
Q 011249 122 AVICGYTKIGLMDDAQRLFDSM----AERN--VISWSAMVAGYANCGNMKAAKEFYDR-MTEKNSVTWVAMIAGYGKCGE 194 (490)
Q Consensus 122 ~l~~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 194 (490)
.+..+-.+++.+.+|...++.- .+.+ ..-|-.+...|...+++|.+.-+... ...++ ...-+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 3444567889999999999983 2222 23455566699999999998888874 32332 2334455677899
Q ss_pred hhHHHHHHhhcCC--CC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHH-HHHHHHhccCChHHHHHHHHH
Q 011249 195 VREAKKVFDEISE--PD-ASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMV-GAISACTQLGDVEMAAILAKH 270 (490)
Q Consensus 195 ~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~ 270 (490)
+..|...|+.+.+ |+ ..+++-++......|.++..+-..+-..... .+....++ .=+.+-=+.++++..+....
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 9999999999987 33 5678888888888888887776555544321 22222222 22233345667776666544
Q ss_pred HHhcCCCCchhHHHH--HHHHHHhcCChHH--HHHHHhcccC----C-------C--hhHHHHHHHHHHhcCChHHHHHH
Q 011249 271 VDEGCCDRTNYVSNA--LIHMHSKCGYLDL--AWREFSRIKN----K-------D--VISYSSMITAFADHGKSQEALDM 333 (490)
Q Consensus 271 ~~~~~~~~~~~~~~~--l~~~~~~~~~~~~--A~~~~~~~~~----~-------~--~~~~~~l~~~~~~~~~~~~a~~~ 333 (490)
..+ ..+|.. ++....+..+-+. -.+..+.+.+ + . ...|..++....-..- ...
T Consensus 1543 --~~n----~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el----~~~ 1612 (2382)
T KOG0890|consen 1543 --DRN----IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL----ENS 1612 (2382)
T ss_pred --ccc----ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH----HHH
Confidence 111 111111 2222221111110 0011111110 0 0 1233333332221110 000
Q ss_pred HHHHHHcCCCCcHH------HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCC-----CchHHHHHHHHHhhcCChHHHH
Q 011249 334 FLKMRNEGIEPNQV------TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKP-----LTEHLTCMVDLLGRSGQLEKAH 402 (490)
Q Consensus 334 ~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~ 402 (490)
.+.. .+..++.. -|..-+..-....+..+-+--+++..-.....| ...+|...++.....|+++.|.
T Consensus 1613 ~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1613 IEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 1100 11222221 111122111111112222222222211111122 2556777777777899999998
Q ss_pred HHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcC
Q 011249 403 SLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELG 444 (490)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (490)
..+-......-+..+...+.-....|+...|+.++++.++..
T Consensus 1691 nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1691 NALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 876554423345566666777788999999999999988643
No 322
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=1.1 Score=37.82 Aligned_cols=56 Identities=9% Similarity=-0.139 Sum_probs=31.0
Q ss_pred HHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 422 GACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
..+...|++-++++....++...|.+..+|..-+.+....=+.++|..-|.+..+.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 33445555555666555666666666665555555555555555555555555443
No 323
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.37 E-value=8.1 Score=32.71 Aligned_cols=57 Identities=19% Similarity=0.114 Sum_probs=29.2
Q ss_pred hhcCChHHHHHHHHhcc---CCC-----ChhhHHHHHHHH-hhhCChHHHHHHHHHHHhcCCCCCc
Q 011249 393 GRSGQLEKAHSLIMDYK---DFC-----DAGTWGALLGAC-KVHVNAELGEIAARHLLELGPEKTG 449 (490)
Q Consensus 393 ~~~g~~~~A~~~~~~~~---~~~-----~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~ 449 (490)
...|++.+|+++|+++. ... ...-|---...| ....|.-.+...+++..+.+|....
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 45667777777776654 011 111111111122 2235666677777777777776443
No 324
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.35 E-value=14 Score=35.31 Aligned_cols=159 Identities=10% Similarity=0.058 Sum_probs=74.7
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHH
Q 011249 244 SEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITA 320 (490)
Q Consensus 244 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 320 (490)
|.....+++..+.+...+.-.+.+..++...| .+-..+..++..|... ..++-..+++++.+ .|++.-..|+.-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33444455555555555555555555555543 2334444555555554 33444444544443 222222333333
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcH------HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhh
Q 011249 321 FADHGKSQEALDMFLKMRNEGIEPNQ------VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGR 394 (490)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (490)
|-+ ++.+.+..+|.++... +.|.. ..|..+... -..+.+....+..++....|...-...+..+-.-|..
T Consensus 142 yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 332 5555555555555443 22210 123333221 1344555555555555554444444445555556666
Q ss_pred cCChHHHHHHHHhcc
Q 011249 395 SGQLEKAHSLIMDYK 409 (490)
Q Consensus 395 ~g~~~~A~~~~~~~~ 409 (490)
..++.+|++++..+.
T Consensus 218 ~eN~~eai~Ilk~il 232 (711)
T COG1747 218 NENWTEAIRILKHIL 232 (711)
T ss_pred ccCHHHHHHHHHHHh
Confidence 666666666666554
No 325
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.34 E-value=2.2 Score=33.15 Aligned_cols=99 Identities=12% Similarity=0.023 Sum_probs=58.9
Q ss_pred CcHHHHHHHHHH---hcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCC-ChhhHHH
Q 011249 344 PNQVTFIGVLTA---CSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFC-DAGTWGA 419 (490)
Q Consensus 344 p~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 419 (490)
-+....+.|+.. -...++.+++..+++.+.--..-.+...++ -...+...|++++|.++|+.+.... ....-..
T Consensus 5 Cs~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kA 82 (153)
T TIGR02561 5 CSNRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMF--DGWLLIARGNYDEAARILRELLSSAGAPPYGKA 82 (153)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhccCCCchHHHH
Confidence 344455555554 346889999999999997532222334444 3455788999999999999998443 4344445
Q ss_pred HHHHHhhhCChHHHHHHHHHHHhcC
Q 011249 420 LLGACKVHVNAELGEIAARHLLELG 444 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (490)
|+..|.....-..=...-.++++.+
T Consensus 83 L~A~CL~al~Dp~Wr~~A~~~le~~ 107 (153)
T TIGR02561 83 LLALCLNAKGDAEWHVHADEVLARD 107 (153)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhC
Confidence 5555544332222333334444443
No 326
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.27 E-value=9.1 Score=33.10 Aligned_cols=218 Identities=13% Similarity=0.127 Sum_probs=102.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH---cCc--ccChhhHHHHHHHHhccCChHHHHHHHHHHHhc-CCCCch----hHHH
Q 011249 215 AMTVCYVQNGYAKAAIEMYKVMRQ---ENV--RISEVAMVGAISACTQLGDVEMAAILAKHVDEG-CCDRTN----YVSN 284 (490)
Q Consensus 215 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~----~~~~ 284 (490)
.++....+.|++++.++.|.++.. ..+ .-+....+.++.......+.+-...+|+.-.+. .-..+. .+-.
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 445555666666666666555542 111 112334445555444444444333333322110 000010 1123
Q ss_pred HHHHHHHhcCChHHHHHHHhcccC------------C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCcHHH
Q 011249 285 ALIHMHSKCGYLDLAWREFSRIKN------------K---DVISYSSMITAFADHGKSQEALDMFLKMRNE-GIEPNQVT 348 (490)
Q Consensus 285 ~l~~~~~~~~~~~~A~~~~~~~~~------------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~ 348 (490)
-|...|...+++.+..++++++.. + -...|..-|+.|...++-.+-..+|++...- ...|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 355666666666666666665542 0 1245666777787777777777777776642 23454444
Q ss_pred HHHHHHH-----hcCCCChHHHHHHHHHHHHHc---CCCCCch--HHHHHHHHHhhcC----ChHHHHHHHHhccCCCCh
Q 011249 349 FIGVLTA-----CSHGGLVEDGCKQFELMTRVF---GIKPLTE--HLTCMVDLLGRSG----QLEKAHSLIMDYKDFCDA 414 (490)
Q Consensus 349 ~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~---~~~~~~~--~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~ 414 (490)
... ++- ..+.|++++|..-|-++.+.+ |.+.... -|..|..++.+.| +.++|.- ....|..
T Consensus 230 mGv-IRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNdPEI 304 (440)
T KOG1464|consen 230 MGV-IRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKNDPEI 304 (440)
T ss_pred HhH-HHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCCHHH
Confidence 433 333 345677777765544444422 2221122 1334445555544 1112110 1123444
Q ss_pred hhHHHHHHHHhhhCChHHHHHHHH
Q 011249 415 GTWGALLGACKVHVNAELGEIAAR 438 (490)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~a~~~~~ 438 (490)
.....++.+|.. ++..+-++++.
T Consensus 305 lAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 305 LAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred HHHHHHHHHHhc-ccHHHHHHHHH
Confidence 556666666643 34444444443
No 327
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.25 E-value=4.8 Score=33.25 Aligned_cols=76 Identities=20% Similarity=0.142 Sum_probs=55.3
Q ss_pred HHhhcCChHHHHHHHHhccCCC---ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcC-C---CCCchHHHHHHHHHhcCC
Q 011249 391 LLGRSGQLEKAHSLIMDYKDFC---DAGTWGALLGACKVHVNAELGEIAARHLLELG-P---EKTGNSALLANIYASMGK 463 (490)
Q Consensus 391 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p---~~~~~~~~l~~~~~~~g~ 463 (490)
.+.+.|+ ++|.+.|-++...| ++.....|+ .|....|.++++.++-++++.. | -|+..+..|+.++.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3455566 67777777766333 334444444 4555779999999999999865 2 268899999999999999
Q ss_pred cchHH
Q 011249 464 WKDSE 468 (490)
Q Consensus 464 ~~~A~ 468 (490)
++.|-
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 98874
No 328
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.08 E-value=0.57 Score=29.18 Aligned_cols=35 Identities=20% Similarity=0.104 Sum_probs=27.3
Q ss_pred HHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHH
Q 011249 419 ALLGACKVHVNAELGEIAARHLLELGPEKTGNSAL 453 (490)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 453 (490)
.+..++.+.|++++|.+..+.+++.+|+|..+...
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45567899999999999999999999998765443
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.06 E-value=0.25 Score=25.36 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=16.7
Q ss_pred chHHHHHHHHHhcCCcchHHHHHH
Q 011249 449 GNSALLANIYASMGKWKDSEIVKM 472 (490)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~ 472 (490)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777777777777664
No 330
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.95 E-value=21 Score=36.67 Aligned_cols=217 Identities=10% Similarity=-0.055 Sum_probs=120.8
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCchh-------HHHHHH-HHHHhcCChHHHHHHHhcccC--------CChhHHHHH
Q 011249 254 ACTQLGDVEMAAILAKHVDEGCCDRTNY-------VSNALI-HMHSKCGYLDLAWREFSRIKN--------KDVISYSSM 317 (490)
Q Consensus 254 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l 317 (490)
......++++|..+..++...-..|+.. .++++- .+....|+++.|.++.+.... .....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456788999999888876543233221 223221 233456888888887766543 356677788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHH---HHHHHH--HhcCCCC--hHHHHHHHHHHHHHcCCCCC-----chHH
Q 011249 318 ITAFADHGKSQEALDMFLKMRNEGIEPNQVT---FIGVLT--ACSHGGL--VEDGCKQFELMTRVFGIKPL-----TEHL 385 (490)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~--~~~~~g~--~~~a~~~~~~~~~~~~~~~~-----~~~~ 385 (490)
..+..-.|++++|..+.+...+..-.-+... +..+.. .+..+|. .++....+......+..... ..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 8888889999999988887765322233332 233322 3566773 33344444444443222222 2333
Q ss_pred HHHHHHHhhcCChHHHHHHHHhc----c-CCCCh--h--hHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC--CchHHH-
Q 011249 386 TCMVDLLGRSGQLEKAHSLIMDY----K-DFCDA--G--TWGALLGACKVHVNAELGEIAARHLLELGPEK--TGNSAL- 453 (490)
Q Consensus 386 ~~l~~~~~~~g~~~~A~~~~~~~----~-~~~~~--~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~- 453 (490)
..+..++.+ ++.+..-.... . ..|.+ . .+..++......|+.++|...++++.....++ ...|..
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444455544 33333322221 1 22222 1 22366777888999999999999888744222 222221
Q ss_pred --H--HHHHHhcCCcchHHHHHHH
Q 011249 454 --L--ANIYASMGKWKDSEIVKMM 473 (490)
Q Consensus 454 --l--~~~~~~~g~~~~A~~~~~~ 473 (490)
. .......|+...+.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 1 2223456888877776665
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.92 E-value=0.25 Score=26.90 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 450 NSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
++..++.++.+.|++++|.+.++++.+.-+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 467889999999999999999999987643
No 332
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=9.8 Score=36.97 Aligned_cols=152 Identities=16% Similarity=0.156 Sum_probs=97.0
Q ss_pred HHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHH
Q 011249 189 YGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILA 268 (490)
Q Consensus 189 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 268 (490)
....|+++.|..++..+.+ ...+.++..+-+.|-.++|+++ .+|+.... ....+.|+++.|.++.
T Consensus 596 ~vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la 660 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLA 660 (794)
T ss_pred HhhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHH
Confidence 3456777777776666653 3345566667777777777664 23332221 2234678888877765
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH
Q 011249 269 KHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVT 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 348 (490)
.+. .+..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+.+....+-....+.|. .|.
T Consensus 661 ~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N~-- 726 (794)
T KOG0276|consen 661 VEA------NSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQGK-NNL-- 726 (794)
T ss_pred Hhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhhcc-cch--
Confidence 543 3456678888888888888888888876543 56667777777777766666666666542 122
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHH
Q 011249 349 FIGVLTACSHGGLVEDGCKQFELM 372 (490)
Q Consensus 349 ~~~l~~~~~~~g~~~~a~~~~~~~ 372 (490)
...+|...|+++++.+++.+-
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHHhc
Confidence 223345578888888777655
No 333
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.70 E-value=0.34 Score=26.90 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=13.8
Q ss_pred CCchhHHHHHHHHHHhcCChHHHH
Q 011249 277 DRTNYVSNALIHMHSKCGYLDLAW 300 (490)
Q Consensus 277 ~~~~~~~~~l~~~~~~~~~~~~A~ 300 (490)
|.+...|+.+..+|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445555666666666666665553
No 334
>PRK10941 hypothetical protein; Provisional
Probab=90.40 E-value=1.4 Score=38.72 Aligned_cols=63 Identities=21% Similarity=0.065 Sum_probs=51.4
Q ss_pred HHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 417 WGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
.+.+-.+|.+.+++++|.++.+.++...|+++.-+.--+-+|.+.|.+..|..-++...+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 355666778888899999999998888898888888888888888888888888877766543
No 335
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.30 E-value=0.66 Score=24.49 Aligned_cols=30 Identities=20% Similarity=-0.015 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 417 WGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
+..+...+...|+++.|...++++++..|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 344445555555666666666555555543
No 336
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.21 E-value=8.5 Score=30.97 Aligned_cols=41 Identities=5% Similarity=0.153 Sum_probs=21.9
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcC
Q 011249 90 LYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMA 144 (490)
Q Consensus 90 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 144 (490)
.+..+.+.|+.|+...+..++.. +.+.|++..-.+++..-.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~l--------------Li~~~~~~~L~qllq~~V 56 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDL--------------LIRNGQFSQLHQLLQYHV 56 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH--------------HHHcCCHHHHHHHHhhcc
Confidence 33444455666666666555554 455555555555554333
No 337
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.84 E-value=0.22 Score=44.07 Aligned_cols=59 Identities=7% Similarity=0.116 Sum_probs=28.9
Q ss_pred HHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcc
Q 011249 420 LLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 478 (490)
-.+++.+.+....|++-+..+.+++|+...-|-.-+.+....|+|++|.+.+....+.+
T Consensus 154 r~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 154 RASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred ccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 33444444455555555555555555554444444444444555555555554444443
No 338
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.63 E-value=3.5 Score=39.80 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=47.5
Q ss_pred HhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhcCC
Q 011249 128 TKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISE 207 (490)
Q Consensus 128 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 207 (490)
.+.|+.+.|.++..+. .+..-|..|.++....+++..|.+.|.+.. -|..|+-.+...|+.+....+-....+
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 3446666666654433 344556666666666666666666665543 233344444444444332222222211
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 011249 208 PDASCWAAMTVCYVQNGYAKAAIEMYKV 235 (490)
Q Consensus 208 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 235 (490)
. ...|.-.-+|...|+++++.+++.+
T Consensus 721 ~--g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 721 Q--GKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred h--cccchHHHHHHHcCCHHHHHHHHHh
Confidence 0 0112222345556666666555433
No 339
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.18 E-value=6.9 Score=38.98 Aligned_cols=188 Identities=18% Similarity=0.193 Sum_probs=97.1
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccCh----------hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCc
Q 011249 210 ASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISE----------VAMVGAISACTQLGDVEMAAILAKHVDEGCCDRT 279 (490)
Q Consensus 210 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 279 (490)
+.+...++-.|....+++..+++.+.+++. ||. ..|...++--.+-|+-++|....-.+.+..-+..
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 445556667777778888888888777653 222 1233333333455777777766665554432333
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH---HHHHHHHh
Q 011249 280 NYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVT---FIGVLTAC 356 (490)
Q Consensus 280 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~ 356 (490)
+..| +-+|++ |++|- +.+.|...+..+.|.+.|++..+ +.|+... +..|+.+-
T Consensus 278 pDm~-------Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 278 PDMY-------CLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred Ccee-------eeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 3222 222221 22111 11123444556777778887776 5665542 33333221
Q ss_pred cCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHH
Q 011249 357 SHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIA 436 (490)
Q Consensus 357 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 436 (490)
...++...++- .+ | -.|-..+++.|..++-.++++-.. .+.+-.-.+|+.+|++.
T Consensus 334 --G~~Fens~Elq-~I----g--------mkLn~LlgrKG~leklq~YWdV~~----------y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 --GEHFENSLELQ-QI----G--------MKLNSLLGRKGALEKLQEYWDVAT----------YFEASVLANDYQKAIQA 388 (1226)
T ss_pred --hhhccchHHHH-HH----H--------HHHHHHhhccchHHHHHHHHhHHH----------hhhhhhhccCHHHHHHH
Confidence 11222222111 11 1 113344567777777766665433 23344456778888888
Q ss_pred HHHHHhcCCCCCc
Q 011249 437 ARHLLELGPEKTG 449 (490)
Q Consensus 437 ~~~~~~~~p~~~~ 449 (490)
.+.+.++.|..-.
T Consensus 389 ae~mfKLk~P~WY 401 (1226)
T KOG4279|consen 389 AEMMFKLKPPVWY 401 (1226)
T ss_pred HHHHhccCCceeh
Confidence 8888887766433
No 340
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.97 E-value=0.5 Score=25.99 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=26.9
Q ss_pred chHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 449 GNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
.+|..++.+|...|++++|.+.|++..+...
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4688899999999999999999999877543
No 341
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.87 E-value=0.55 Score=27.24 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=24.8
Q ss_pred chHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 449 GNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
.++..|+.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46789999999999999999999988664
No 342
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.54 E-value=1.5 Score=36.40 Aligned_cols=73 Identities=22% Similarity=0.073 Sum_probs=52.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHH-hccCCC-ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCC---chHHHHHHH
Q 011249 385 LTCMVDLLGRSGQLEKAHSLIM-DYKDFC-DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKT---GNSALLANI 457 (490)
Q Consensus 385 ~~~l~~~~~~~g~~~~A~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~ 457 (490)
.+.-+..+.+.+.+++++...+ +++.+| +...-..++..++-.|++++|..-++-+-++.|++. ..|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445667778888899988874 444445 445666777888889999999998888888888753 345555433
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.99 E-value=4.3 Score=38.05 Aligned_cols=153 Identities=14% Similarity=0.066 Sum_probs=92.4
Q ss_pred HHHHHhcCChHHHHH-HHhcccC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChH
Q 011249 287 IHMHSKCGYLDLAWR-EFSRIKN--KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVE 363 (490)
Q Consensus 287 ~~~~~~~~~~~~A~~-~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 363 (490)
|.-....|++-.|-+ ++..+.. .++.........+...|+++.+...+...... +.....+..++++.....|+++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 333445577666644 4443333 23333333344567789999999988876553 4456678888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHH
Q 011249 364 DGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLL 441 (490)
Q Consensus 364 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (490)
+|...-..|... .+ .+++........--..|-++++...++++. .+|....|...+..-.-.++...-.+.|..-.
T Consensus 375 ~a~s~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~ 452 (831)
T PRK15180 375 EALSTAEMMLSN-EI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGNAFSEAFHAGI 452 (831)
T ss_pred HHHHHHHHHhcc-cc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcchHHHHHHhhh
Confidence 999988888763 22 233333333333445678899998888776 45555566555544322233333334444444
Q ss_pred h
Q 011249 442 E 442 (490)
Q Consensus 442 ~ 442 (490)
+
T Consensus 453 ~ 453 (831)
T PRK15180 453 Q 453 (831)
T ss_pred h
Confidence 3
No 344
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.72 E-value=26 Score=33.42 Aligned_cols=271 Identities=11% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccC--CchhHHHHHHHHHhcCChhHHHHHHhhcCC----
Q 011249 134 DDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEK--NSVTWVAMIAGYGKCGEVREAKKVFDEISE---- 207 (490)
Q Consensus 134 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---- 207 (490)
+.|.+.++-..+.+...+...-.........+....+|++..++ +...|+..|..|...-....-..+...+.-
T Consensus 268 ~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~ 347 (568)
T KOG2396|consen 268 DLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKA 347 (568)
T ss_pred HHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q ss_pred -----CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhcc--CChHHHHHHHHHHHhcCCCCch
Q 011249 208 -----PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQL--GDVEMAAILAKHVDEGCCDRTN 280 (490)
Q Consensus 208 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~ 280 (490)
.....+......+.......++...-..+...++.-+...+..-+...... .---.-..++..+...-..+..
T Consensus 348 ~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~ 427 (568)
T KOG2396|consen 348 HELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELL 427 (568)
T ss_pred HHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhH
Q ss_pred hHHHHHH-HHHHhcCChHHHHHHHhcccCCChhHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH---
Q 011249 281 YVSNALI-HMHSKCGYLDLAWREFSRIKNKDVISY-SSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTA--- 355 (490)
Q Consensus 281 ~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--- 355 (490)
..++... ..+......+.....+..+..++..++ +..+.-+.+.|-..+|...+..+... .+|+...|..+++.
T Consensus 428 ~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~ 506 (568)
T KOG2396|consen 428 ISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKE 506 (568)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhh
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhc
Q 011249 356 CSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDY 408 (490)
Q Consensus 356 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 408 (490)
....| ..-+..+++.+...+| .++..|...+..-...|+.+.+-.++.+.
T Consensus 507 ~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 507 QESCN-LANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HhhcC-chHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHH
No 345
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.63 E-value=19 Score=31.60 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=26.2
Q ss_pred HHHHHhCCChHHHHHHHHHhccC-----------CchhHHHHHHHHHhcCChhHHHHHH
Q 011249 155 VAGYANCGNMKAAKEFYDRMTEK-----------NSVTWVAMIAGYGKCGEVREAKKVF 202 (490)
Q Consensus 155 ~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~ 202 (490)
.+-..+.+++++|+..|.++... ...+...+...|...|+...--++.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34445556666666666666532 1234455666666666665544444
No 346
>PRK12798 chemotaxis protein; Reviewed
Probab=87.59 E-value=24 Score=32.90 Aligned_cols=184 Identities=14% Similarity=0.119 Sum_probs=112.5
Q ss_pred cCChHHHHHHHhcccC----CChhHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHhcCCCChH
Q 011249 293 CGYLDLAWREFSRIKN----KDVISYSSMITA-FADHGKSQEALDMFLKMRNEGIEPNQ----VTFIGVLTACSHGGLVE 363 (490)
Q Consensus 293 ~~~~~~A~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~ 363 (490)
.|+.+++.+.+..+.. +....|-.|+.+ .....++.+|+++|+...- ..|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4777777777777664 234455566554 3445678888888888765 34533 23444455567888888
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHH-HHHHHhhc---CChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHH
Q 011249 364 DGCKQFELMTRVFGIKPLTEHLTC-MVDLLGRS---GQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARH 439 (490)
Q Consensus 364 ~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (490)
++..+-......|...|-...|.. +...+.+. -..+.-..++..|...-....|..+...-...|+.+.|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 888877777776565555444432 22333333 23444555556665333456888888888889999999999999
Q ss_pred HHhcCCCCCchHHHHHHHH-----HhcCCcchHHHHHHHhhhccc
Q 011249 440 LLELGPEKTGNSALLANIY-----ASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 440 ~~~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~ 479 (490)
+..+... ...-...+..| .-..+.+++.+.+..+....+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 8886633 22222222222 234557777777776654433
No 347
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.59 E-value=6.5 Score=34.79 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=60.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcccC-C--------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH
Q 011249 277 DRTNYVSNALIHMHSKCGYLDLAWREFSRIKN-K--------DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQV 347 (490)
Q Consensus 277 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 347 (490)
+.+..+...++..-....++++++..+-++.. | ...+|-.+ + -.-++++++.++..=+.-|+-||..
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---l-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---L-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---H-HccChHHHHHHHhCcchhccccchh
Confidence 44444455555555556667777766665543 1 12222222 2 2335677777777777788888888
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011249 348 TFIGVLTACSHGGLVEDGCKQFELMTRV 375 (490)
Q Consensus 348 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 375 (490)
++..+++.+.+.+++.+|..+...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888887777666653
No 348
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=87.54 E-value=1.4 Score=31.30 Aligned_cols=55 Identities=16% Similarity=0.029 Sum_probs=36.1
Q ss_pred CCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhcCCcc
Q 011249 411 FCDAGTWGALLGACKVHVNAELGEIAARHLLELGPE--KTGNSALLANIYASMGKWK 465 (490)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 465 (490)
+.|...-..+...+...|+++.|++.+-.+++.+|+ +...-..++.++...|.-+
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 345566677777788888888888888888877654 3556677777777777654
No 349
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.32 E-value=11 Score=35.12 Aligned_cols=57 Identities=12% Similarity=-0.005 Sum_probs=45.5
Q ss_pred HHHHHhhhCChHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCCcchHHHHHHHhhh
Q 011249 420 LLGACKVHVNAELGEIAARHLLELGPE-KTGNSALLANIYA-SMGKWKDSEIVKMMISE 476 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 476 (490)
.+..+.+.|-+..|.++.+-+..++|. ||-.....+..|. +.++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 345678899999999999999999998 8877777776665 66788888888876554
No 350
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.31 E-value=19 Score=37.48 Aligned_cols=29 Identities=14% Similarity=0.340 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011249 211 SCWAAMTVCYVQNGYAKAAIEMYKVMRQE 239 (490)
Q Consensus 211 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (490)
.-|..|+..|...|+.++|+++|.+....
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 35888999999999999999999998763
No 351
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.28 E-value=3 Score=35.29 Aligned_cols=66 Identities=11% Similarity=-0.004 Sum_probs=43.7
Q ss_pred hHHHHHHHHhhhCChHH-------HHHHHHHHHhcC--CC----CCchHHHHHHHHHhcCCcchHHHHHHHhhhccccc
Q 011249 416 TWGALLGACKVHVNAEL-------GEIAARHLLELG--PE----KTGNSALLANIYASMGKWKDSEIVKMMISETEKKK 481 (490)
Q Consensus 416 ~~~~l~~~~~~~g~~~~-------a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 481 (490)
.+..+.+.|...|+.+. |.+.|+++.+.. |. ...+...+|.+..+.|++++|.+.|.++...+-.+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 45556667777777444 444445544433 22 23567778888999999999999999887765433
No 352
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.19 E-value=2.3 Score=35.89 Aligned_cols=84 Identities=8% Similarity=-0.175 Sum_probs=45.2
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCCc-hHHHHHHHHHhhcCChHHHHHHHHhcc-CCCChh-hHHHHHHHHhhhCChHH
Q 011249 356 CSHGGLVEDGCKQFELMTRVFGIKPLT-EHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCDAG-TWGALLGACKVHVNAEL 432 (490)
Q Consensus 356 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~ 432 (490)
|....+++.|...+.+... +.|+. ..|..=+.++.+..+++.+..--.+.. ..|+.. ....+.........+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 5555666666666555543 34554 334455556666666666655443333 333332 33334444555666677
Q ss_pred HHHHHHHHHh
Q 011249 433 GEIAARHLLE 442 (490)
Q Consensus 433 a~~~~~~~~~ 442 (490)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 7777666644
No 353
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.03 E-value=37 Score=34.39 Aligned_cols=99 Identities=8% Similarity=0.066 Sum_probs=75.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--C---CHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHH
Q 011249 124 ICGYTKIGLMDDAQRLFDSMAE--R---NVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREA 198 (490)
Q Consensus 124 ~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 198 (490)
++.+.+.+.+++|+...+.... + -...+...+..+...|++++|-...-.|...+..-|...+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 4557788999999999887765 2 2346788899999999999999999999988888888888888887776655
Q ss_pred HHHHhhcCC-CCHHhHHHHHHHHHh
Q 011249 199 KKVFDEISE-PDASCWAAMTVCYVQ 222 (490)
Q Consensus 199 ~~~~~~~~~-~~~~~~~~l~~~~~~ 222 (490)
..++-.-.. .++..|..++..+..
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH
Confidence 544433332 456778888877776
No 354
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.78 E-value=5.8 Score=28.22 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 011249 226 AKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDE 273 (490)
Q Consensus 226 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 273 (490)
.-++.+-++.+....+.|++....+.+++|.+.+|+..|.++++-++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345556666666667777777777778888888888888887777663
No 355
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.70 E-value=4.8 Score=28.61 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHH
Q 011249 327 SQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMV 389 (490)
Q Consensus 327 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 389 (490)
.-++.+-+..+....+.|++......+++|.+.+++..|.++++-++.+.+. +...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 3455556666666667788888888888888888888888888877754332 334555444
No 356
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=86.56 E-value=2.8 Score=40.34 Aligned_cols=98 Identities=19% Similarity=0.077 Sum_probs=64.1
Q ss_pred cCCCChHHHHHHHHHHHHHcCCCCC--chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHH
Q 011249 357 SHGGLVEDGCKQFELMTRVFGIKPL--TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAEL 432 (490)
Q Consensus 357 ~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 432 (490)
...|+...|.+.+..+.. ..|. -...-.|...+.+.|....|..++.+.. ....+.++..+.+++....++++
T Consensus 618 r~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 345777777777776643 2332 1223345566666677777777765443 33455567777778888888888
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHH
Q 011249 433 GEIAARHLLELGPEKTGNSALLANI 457 (490)
Q Consensus 433 a~~~~~~~~~~~p~~~~~~~~l~~~ 457 (490)
|++.|+++++.+|+++..-..|..+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHH
Confidence 8888888888888887766665443
No 357
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.47 E-value=4 Score=29.34 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 011249 329 EALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVD 390 (490)
Q Consensus 329 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 390 (490)
+..+-+..+....+.|++......+++|.+.+++..|.++++-++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555666666666788888888888888888888888888888887544 33336666553
No 358
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.08 E-value=6.1 Score=28.43 Aligned_cols=60 Identities=10% Similarity=0.208 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 011249 228 AAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIH 288 (490)
Q Consensus 228 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 288 (490)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-++... .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455556666666677777777777777777777777777777775543 222225554443
No 359
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.90 E-value=17 Score=29.33 Aligned_cols=101 Identities=12% Similarity=0.042 Sum_probs=46.7
Q ss_pred HHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCC
Q 011249 231 EMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKD 310 (490)
Q Consensus 231 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 310 (490)
++++.+.+.++.|+...+..++..+.+.|++..... +...++-+|.......+-.+. +....+.++=-+|.++=
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 444555556666666666666666666666543332 233333333322222211111 12223333333333222
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011249 311 VISYSSMITAFADHGKSQEALDMFLKM 337 (490)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 337 (490)
...+..+++.+...|++-+|+++.+..
T Consensus 89 ~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 89 GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 223444555566666666666666553
No 360
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.89 E-value=12 Score=31.04 Aligned_cols=74 Identities=12% Similarity=0.001 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcC---CCCchhHHHHHHHHHHhcCChHHHH
Q 011249 226 AKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGC---CDRTNYVSNALIHMHSKCGYLDLAW 300 (490)
Q Consensus 226 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~ 300 (490)
-+.|.+.|-++...+.--++.....|...|. ..+.+++..++.+..+.. -.+|+..+.+|+..|.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3566777777776654444444444444443 567777777777665532 2456677777777777777776664
No 361
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=85.81 E-value=26 Score=31.51 Aligned_cols=158 Identities=11% Similarity=0.121 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHhc--CCC----ChHHHHHHHHHHHHHcCCC--CCchHHHHHHHHHhhcCCh
Q 011249 327 SQEALDMFLKMRNEGIEPNQVTFIGVLTACS--HGG----LVEDGCKQFELMTRVFGIK--PLTEHLTCMVDLLGRSGQL 398 (490)
Q Consensus 327 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g----~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 398 (490)
+++.+.+++.|.+.|+.-+..+|........ ... ...+|..+++.|++.+.+- ++-..+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 3455667777888877777666554332222 222 2456778888888865442 223333333221 33333
Q ss_pred ----HHHHHHHHhcc----CCCCh-hhHHHHHHHHhhhCC--hHHHHHHHHHHHhcC-CCCCchHHHHHHHHHhcCCcch
Q 011249 399 ----EKAHSLIMDYK----DFCDA-GTWGALLGACKVHVN--AELGEIAARHLLELG-PEKTGNSALLANIYASMGKWKD 466 (490)
Q Consensus 399 ----~~A~~~~~~~~----~~~~~-~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~ 466 (490)
+++..+|+.+. .+.+. .....++..+....+ ..++.++++.+.+.+ +-....|..+|-+-.-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 33344444444 22233 233333333222222 346677777777655 2234445555533323333324
Q ss_pred HHHHHHHhhhcccccCCCccc
Q 011249 467 SEIVKMMISETEKKKSPGCSW 487 (490)
Q Consensus 467 A~~~~~~~~~~~~~~~~~~~~ 487 (490)
..+.+..+.+. +...+|+.|
T Consensus 236 ~~~~i~ev~~~-L~~~k~~~~ 255 (297)
T PF13170_consen 236 IVEEIKEVIDE-LKEQKGFGW 255 (297)
T ss_pred HHHHHHHHHHH-HhhCcccCh
Confidence 44444444332 334444433
No 362
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.69 E-value=17 Score=34.44 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCCcH-----------HHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011249 314 YSSMITAFADHGKSQEALDMFLKMRN-------EGIEPNQ-----------VTFIGVLTACSHGGLVEDGCKQFELMTRV 375 (490)
Q Consensus 314 ~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~p~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 375 (490)
||.|...+.+.|.+.-+..+|.+..+ .|++|.. .+|+.-+ .|...|++-.|.+.|.+....
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH
Confidence 45555555555555555555555542 3444321 1233222 355667777777777777663
Q ss_pred cCCCCCchHHHHHHHHHh
Q 011249 376 FGIKPLTEHLTCMVDLLG 393 (490)
Q Consensus 376 ~~~~~~~~~~~~l~~~~~ 393 (490)
+..++..|..|..+|.
T Consensus 365 --fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 365 --FHRNPRLWLRLAECCI 380 (696)
T ss_pred --HhcCcHHHHHHHHHHH
Confidence 4455566666666664
No 363
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.42 E-value=51 Score=34.49 Aligned_cols=86 Identities=14% Similarity=0.058 Sum_probs=49.8
Q ss_pred HHhhcCChHHHHHHHHhcc---CCCChhhHHHHHHHHhhhC--------ChHHHHHH--HHHHH---h----cCCC----
Q 011249 391 LLGRSGQLEKAHSLIMDYK---DFCDAGTWGALLGACKVHV--------NAELGEIA--ARHLL---E----LGPE---- 446 (490)
Q Consensus 391 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g--------~~~~a~~~--~~~~~---~----~~p~---- 446 (490)
.|......+-++.+++.+. ..++....+.++..|...= +.+++.+. .+++. + ..|.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~ 679 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLE 679 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhh
Confidence 4455666777777887776 2345555566665554321 12233333 22221 1 1121
Q ss_pred ---CCchHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 447 ---KTGNSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 447 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
....|...+..+.+.|+.++|+.++-....
T Consensus 680 ~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 680 RLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 245777778888899999999998865543
No 364
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.07 E-value=1.9 Score=22.03 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=10.4
Q ss_pred HHHHHHhhcCChHHHHHHHH
Q 011249 387 CMVDLLGRSGQLEKAHSLIM 406 (490)
Q Consensus 387 ~l~~~~~~~g~~~~A~~~~~ 406 (490)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555543
No 365
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.88 E-value=2 Score=22.98 Aligned_cols=30 Identities=17% Similarity=-0.017 Sum_probs=24.3
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 011249 428 VNAELGEIAARHLLELGPEKTGNSALLANI 457 (490)
Q Consensus 428 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 457 (490)
|+.+.+..+|++++...|.++.++...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999999888888888777643
No 366
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.68 E-value=1.7 Score=25.83 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 453 LLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 453 ~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
.|+.+|.+.|+.+.|.++++.+...
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 5677777777777777777777643
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.97 E-value=1.7 Score=22.68 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=25.3
Q ss_pred chHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 449 GNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
..+..++.++...|++++|...++...+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999987754
No 368
>PRK11619 lytic murein transglycosylase; Provisional
Probab=82.72 E-value=59 Score=33.11 Aligned_cols=336 Identities=7% Similarity=-0.090 Sum_probs=153.8
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhcc---CCchhHHHHHHHHHhcCChhHHHHHH
Q 011249 126 GYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTE---KNSVTWVAMIAGYGKCGEVREAKKVF 202 (490)
Q Consensus 126 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 202 (490)
.+.+.+++......+.. ...+...-.....+....|+.++|....+.+-. ..+...+.++..+.+.|.+.... ++
T Consensus 108 ~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d-~w 185 (644)
T PRK11619 108 ELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA-YL 185 (644)
T ss_pred HHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH-HH
Confidence 35567777777773322 223555555667777778887777666655532 24555666666665554433221 11
Q ss_pred hhcC----CCCHHhHHHHHHHH-----------Hh-cCChHHHHHHHHHHHHcCcccChhhHHHHHHHH--hccCChHHH
Q 011249 203 DEIS----EPDASCWAAMTVCY-----------VQ-NGYAKAAIEMYKVMRQENVRISEVAMVGAISAC--TQLGDVEMA 264 (490)
Q Consensus 203 ~~~~----~~~~~~~~~l~~~~-----------~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~g~~~~a 264 (490)
.++. ..+...-..+.... .. ..++..+..++.. +.|+...-..++.++ ....+.+.|
T Consensus 186 ~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A 260 (644)
T PRK11619 186 ERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENA 260 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHH
Confidence 1111 11111111111111 00 0111111111111 112221111111111 123455667
Q ss_pred HHHHHHHHhcC-CCCc--hhHHHHHHHHHHhcCChHHHHHHHhcccC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011249 265 AILAKHVDEGC-CDRT--NYVSNALIHMHSKCGYLDLAWREFSRIKN--KDVISYSSMITAFADHGKSQEALDMFLKMRN 339 (490)
Q Consensus 265 ~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (490)
..++..+.... ..+. ..+...+.......+..++|...+..... .+......-+..-...++++.+...+..|-.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~ 340 (644)
T PRK11619 261 RLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPM 340 (644)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCH
Confidence 77776653332 2221 12233333333333225566666665443 2333444444444467777777777776644
Q ss_pred cCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHH-----------cCCCCC------chH--------HHHHHHHHhh
Q 011249 340 EGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRV-----------FGIKPL------TEH--------LTCMVDLLGR 394 (490)
Q Consensus 340 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~------~~~--------~~~l~~~~~~ 394 (490)
.. .-...-.--+.+++...|+.++|..+|+.+... .|.++. +.. -..-+..+..
T Consensus 341 ~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~ 419 (644)
T PRK11619 341 EA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMY 419 (644)
T ss_pred hh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHH
Confidence 21 112233334555555567777777777765331 011100 000 0112344556
Q ss_pred cCChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcC---CCCCchHHHHHHHHHhcCCcchHHH
Q 011249 395 SGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELG---PEKTGNSALLANIYASMGKWKDSEI 469 (490)
Q Consensus 395 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~ 469 (490)
.|+..+|...+..+....+......+.......|..+.++....+....+ -..|..|...+..+.+.-..+.++-
T Consensus 420 ~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv 497 (644)
T PRK11619 420 WNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYA 497 (644)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHH
Confidence 67777777776655534455555555555667777777776665443211 1123334444444444444554443
No 369
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.59 E-value=16 Score=26.33 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=35.9
Q ss_pred HHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhH
Q 011249 187 AGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAM 248 (490)
Q Consensus 187 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 248 (490)
..+...|++++|..+.+...-||...|..|. -.+.|-.+.+..-+..|...| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALC--EWRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3456677777777777777667777766554 335565666666666666555 3343333
No 370
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=82.20 E-value=76 Score=34.02 Aligned_cols=154 Identities=11% Similarity=0.005 Sum_probs=65.8
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHH-HHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 011249 278 RTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQE-ALDMFLKMRNEGIEPNQVTFIGVLTAC 356 (490)
Q Consensus 278 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~p~~~~~~~l~~~~ 356 (490)
+|..+-...+.++.+.+..+. +...+..++..+-...+.++...+..+. +...+..+.. .++...-...+.++
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aL 799 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAAL 799 (897)
T ss_pred CCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 344444444444444433221 2222333455555555555555444322 2333333332 33444444455555
Q ss_pred cCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHH
Q 011249 357 SHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIA 436 (490)
Q Consensus 357 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 436 (490)
...|..+.+...+..+.+ .++..+-...+.++.+.+. +++...+..+...++..+-...+.++...+....+...
T Consensus 800 g~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~ 874 (897)
T PRK13800 800 AELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDA 874 (897)
T ss_pred HhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHH
Confidence 555544333333333322 2344444445555555544 33444443333344554444445555443223344444
Q ss_pred HHHHHh
Q 011249 437 ARHLLE 442 (490)
Q Consensus 437 ~~~~~~ 442 (490)
+..+++
T Consensus 875 L~~al~ 880 (897)
T PRK13800 875 LTTALT 880 (897)
T ss_pred HHHHHh
Confidence 444443
No 371
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.08 E-value=36 Score=30.14 Aligned_cols=83 Identities=8% Similarity=0.051 Sum_probs=45.9
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-CcccChhhHHHHHHHHhccCChHHHHHHHHH-----HHhcCCCCchh
Q 011249 208 PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQE-NVRISEVAMVGAISACTQLGDVEMAAILAKH-----VDEGCCDRTNY 281 (490)
Q Consensus 208 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~ 281 (490)
++..+...++..++..+++..-.++++..... +..-|...|..++......|+..-..++... +.+.+++.+..
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~ 279 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDE 279 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHH
Confidence 44455555666666666666666666555543 3444555666666666666666655555543 34445555555
Q ss_pred HHHHHHHHH
Q 011249 282 VSNALIHMH 290 (490)
Q Consensus 282 ~~~~l~~~~ 290 (490)
.-..+-..+
T Consensus 280 L~~~L~~LF 288 (292)
T PF13929_consen 280 LRSQLSELF 288 (292)
T ss_pred HHHHHHHHH
Confidence 544444433
No 372
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.11 E-value=66 Score=32.62 Aligned_cols=38 Identities=16% Similarity=0.312 Sum_probs=19.4
Q ss_pred HHHHHHhCCChHHHHHHHHHhcc---CCchhHHHHHHHHHh
Q 011249 154 MVAGYANCGNMKAAKEFYDRMTE---KNSVTWVAMIAGYGK 191 (490)
Q Consensus 154 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 191 (490)
++-.|.+.|++++|.++..+... .....+...+..|..
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHh
Confidence 44555666666666666644332 233445555555544
No 373
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.93 E-value=53 Score=31.37 Aligned_cols=83 Identities=18% Similarity=0.050 Sum_probs=49.1
Q ss_pred HHHHHHHhccCCCC-CCc-eehHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHH
Q 011249 52 LSYARQVFDQIPKC-KTQ-FLWTSLIRNHVLHA-HFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYT 128 (490)
Q Consensus 52 ~~~A~~~~~~~~~~-~~~-~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~ 128 (490)
.+.|+.+.+.|+.- |+. ..++.|...|.... .+..+..++.+..+..-.-.......++ .++..+.
T Consensus 70 LekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllf-----------QLaql~~ 138 (629)
T KOG2300|consen 70 LEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLF-----------QLAQLHI 138 (629)
T ss_pred HHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHH-----------HHHHHHh
Confidence 34455555555532 221 35666777777665 7888888888877652221122222222 2566778
Q ss_pred hcCCHHHHHHHHhhcCC
Q 011249 129 KIGLMDDAQRLFDSMAE 145 (490)
Q Consensus 129 ~~g~~~~A~~~~~~~~~ 145 (490)
-..++..|.+++.--.+
T Consensus 139 idkD~~sA~elLavga~ 155 (629)
T KOG2300|consen 139 IDKDFPSALELLAVGAE 155 (629)
T ss_pred hhccchhHHHHHhcccc
Confidence 88899999888665443
No 374
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=80.25 E-value=49 Score=30.58 Aligned_cols=104 Identities=12% Similarity=0.108 Sum_probs=71.9
Q ss_pred HHHHHHHhhcCChHHHHHHHHhccCC--------CChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCC-------ch
Q 011249 386 TCMVDLLGRSGQLEKAHSLIMDYKDF--------CDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKT-------GN 450 (490)
Q Consensus 386 ~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~ 450 (490)
..|...+...|+.++|..++...+.. .-....---++.|...+|+-.|.-+-++.....-+.+ ..
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 45667788889999999988877611 0111112234678889999999998888876432222 46
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhhcccccCCCccccC
Q 011249 451 SALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSWIS 489 (490)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 489 (490)
|..++......+.|=++-+.++.+...|.-+...-.|..
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~ 253 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIE 253 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhh
Confidence 777888888888888999999988877765554444543
No 375
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.64 E-value=20 Score=25.77 Aligned_cols=87 Identities=13% Similarity=0.092 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011249 261 VEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNE 340 (490)
Q Consensus 261 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (490)
.++|..+-+.+...+- ....+-..-+..+.+.|++++|..+.+....||...|-++-. .+.|..++...-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4566666555554431 122222233456778899999999999888889888877754 4667777777777777776
Q ss_pred CCCCcHHHHHH
Q 011249 341 GIEPNQVTFIG 351 (490)
Q Consensus 341 ~~~p~~~~~~~ 351 (490)
| .|....|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 5 555555543
No 376
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.17 E-value=5.2 Score=23.78 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=22.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCC
Q 011249 73 SLIRNHVLHAHFRQSILLYAKMHRLGV 99 (490)
Q Consensus 73 ~l~~~~~~~g~~~~A~~~~~~m~~~g~ 99 (490)
.|..+|...|+.+.|.+++++..+.|-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 467888999999999999998886543
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.05 E-value=3.6 Score=27.98 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=32.0
Q ss_pred hhCChHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCCcchHHHHH
Q 011249 426 VHVNAELGEIAARHLLELGPEKTG---NSALLANIYASMGKWKDSEIVK 471 (490)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~ 471 (490)
...+.++|+..|+++++..++.+. ++-.|+.+|...|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888886655444 4445566677778877777653
No 378
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=78.89 E-value=3.3 Score=36.32 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=21.6
Q ss_pred hhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHH
Q 011249 426 VHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVK 471 (490)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (490)
+.|+.++|..+|+.++.+.|+++.++..++......++.-+|..++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhh
Confidence 3444455555555555555555544444444444444444444444
No 379
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.51 E-value=19 Score=27.59 Aligned_cols=73 Identities=14% Similarity=-0.047 Sum_probs=43.4
Q ss_pred CCCchHHHHHHHHHhhcCChH---HHHHHHHhcc--CCCC--hhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchH
Q 011249 379 KPLTEHLTCMVDLLGRSGQLE---KAHSLIMDYK--DFCD--AGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNS 451 (490)
Q Consensus 379 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 451 (490)
.++..+--.+..++.+..+.+ +-+.+++.+. ..|. .....-|.-++.+.++++++.++.+.+++.+|+|..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 444445455566666555433 3445555544 2222 22333455677888888888888888888888876543
No 380
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.25 E-value=29 Score=30.42 Aligned_cols=87 Identities=6% Similarity=-0.080 Sum_probs=40.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH-----
Q 011249 217 TVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHS----- 291 (490)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 291 (490)
|.+++..|+|.+++...-+--+.--+..+.....-|-.|.+.|.+..+.++-.......-.-+..-|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 556666666666665443333211111222333333345666666666666555544322222333444444443
Q ss_pred hcCChHHHHHHH
Q 011249 292 KCGYLDLAWREF 303 (490)
Q Consensus 292 ~~~~~~~A~~~~ 303 (490)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 235555555444
No 381
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.12 E-value=41 Score=32.79 Aligned_cols=50 Identities=16% Similarity=0.076 Sum_probs=25.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCc---------HH---HHHHHHHHhcCCCChHHHHHHHHHHH
Q 011249 323 DHGKSQEALDMFLKMRNEGIEPN---------QV---TFIGVLTACSHGGLVEDGCKQFELMT 373 (490)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~p~---------~~---~~~~l~~~~~~~g~~~~a~~~~~~~~ 373 (490)
....++++...|.-.+.. ..|+ ++ +...+...|..+|+.+.|..++++..
T Consensus 250 hs~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred cchHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 344566666666666553 2332 11 23333444566666666666665543
No 382
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=77.68 E-value=55 Score=29.68 Aligned_cols=86 Identities=15% Similarity=-0.047 Sum_probs=40.4
Q ss_pred CChHHHHHHHHHHHHHcCCCCC-chHHH---HHHHHHhhcCChHHHHHHHHhc---c-CCCChhhHHHHHHHHhh--hCC
Q 011249 360 GLVEDGCKQFELMTRVFGIKPL-TEHLT---CMVDLLGRSGQLEKAHSLIMDY---K-DFCDAGTWGALLGACKV--HVN 429 (490)
Q Consensus 360 g~~~~a~~~~~~~~~~~~~~~~-~~~~~---~l~~~~~~~g~~~~A~~~~~~~---~-~~~~~~~~~~l~~~~~~--~g~ 429 (490)
.++..|..+|-+..+.+..-.+ ..... .|+-+=.-.+..++.-.++..= . ..|+.....++..++.+ ..+
T Consensus 223 kDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkd 302 (411)
T KOG1463|consen 223 KDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKD 302 (411)
T ss_pred cccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHH
Confidence 5666666666666552211111 12222 2222223345555555554211 1 34566666666666643 345
Q ss_pred hHHHHHHHHHHHhcCC
Q 011249 430 AELGEIAARHLLELGP 445 (490)
Q Consensus 430 ~~~a~~~~~~~~~~~p 445 (490)
++.|..-|+.=+..+|
T Consensus 303 F~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 303 FEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHhHHHHhcCh
Confidence 6666665555444443
No 383
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.02 E-value=52 Score=29.02 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=30.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCcccChhhH-------HHHHHHHhccCChHHHHH
Q 011249 215 AMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAM-------VGAISACTQLGDVEMAAI 266 (490)
Q Consensus 215 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-------~~l~~~~~~~g~~~~a~~ 266 (490)
.+.+-..+.+++++|+..|.++...|+..+..+. ..+...|...|+...-.+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 3455566677777777777777777766665433 334444555555444333
No 384
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=76.79 E-value=40 Score=27.56 Aligned_cols=55 Identities=9% Similarity=0.187 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 011249 84 FRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE 145 (490)
Q Consensus 84 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 145 (490)
.+.|+.+|+.+.+.--.| .+....+.-+.+ ...+-.|.+.|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~~~--~~lhe~i~~lik-----~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLP--ETLHEEIRKLIK-----EQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCc--HHHHHHHHHHHH-----HHHHHHHHhcCchHHHHHHHHHHhc
Confidence 467788887776642222 122222221100 2334456666777777766666654
No 385
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=76.68 E-value=17 Score=35.35 Aligned_cols=87 Identities=8% Similarity=-0.166 Sum_probs=71.8
Q ss_pred hhcCChHHHHHHHHhcc-CCC--ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHH
Q 011249 393 GRSGQLEKAHSLIMDYK-DFC--DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEI 469 (490)
Q Consensus 393 ~~~g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 469 (490)
...|+...|.+.+.... ..| .......|.+...+.|....|-.++.+.+.+....|-++..+++++....+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 45789999999887655 444 234566677888888899999999999999887778899999999999999999999
Q ss_pred HHHHhhhccc
Q 011249 470 VKMMISETEK 479 (490)
Q Consensus 470 ~~~~~~~~~~ 479 (490)
.++...+...
T Consensus 698 ~~~~a~~~~~ 707 (886)
T KOG4507|consen 698 AFRQALKLTT 707 (886)
T ss_pred HHHHHHhcCC
Confidence 9998876543
No 386
>PF13934 ELYS: Nuclear pore complex assembly
Probab=76.66 E-value=46 Score=28.57 Aligned_cols=116 Identities=9% Similarity=0.053 Sum_probs=0.0
Q ss_pred HhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccC--Cch
Q 011249 103 GFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEK--NSV 180 (490)
Q Consensus 103 ~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~ 180 (490)
+..|...++++ .+...+++++|.+.+-.-.-+ ......++.++...|+.+.|+.+++....+ +..
T Consensus 76 p~~~~~~~~g~------------W~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~ 142 (226)
T PF13934_consen 76 PPKYIKFIQGF------------WLLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPE 142 (226)
T ss_pred CHHHHHHHHHH------------HHhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHH
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhhcCCCC-HHhHHHHHHHHH----hcCChHHHHHH
Q 011249 181 TWVAMIAGYGKCGEVREAKKVFDEISEPD-ASCWAAMTVCYV----QNGYAKAAIEM 232 (490)
Q Consensus 181 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~----~~g~~~~A~~~ 232 (490)
....++.. ..++.+.+|..+-+...+.. ...+..++..+. +.+..++-+.+
T Consensus 143 ~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 143 ALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 387
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=76.58 E-value=19 Score=27.47 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=32.7
Q ss_pred HHHHHHHHHHh--cCCCCCchHHHHHHHHHhcCCcchHHHHHHH
Q 011249 432 LGEIAARHLLE--LGPEKTGNSALLANIYASMGKWKDSEIVKMM 473 (490)
Q Consensus 432 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (490)
.+.++|+.+.. ++-..+.+|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888888776 4466777888888888888888888888864
No 388
>PRK10941 hypothetical protein; Provisional
Probab=76.51 E-value=14 Score=32.59 Aligned_cols=65 Identities=14% Similarity=-0.098 Sum_probs=45.5
Q ss_pred HHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchH
Q 011249 387 CMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNS 451 (490)
Q Consensus 387 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 451 (490)
.+-.+|.+.++++.|.++.+.+. .+.++.-+.--.-.|.+.|.+..|..-++..++.-|++|.+-
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 35556777788888887777766 334455565566667788888888888888888777776543
No 389
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.93 E-value=90 Score=31.23 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcCCC-CHhHHHHHHHH-----HHhCCChHHHHHHHHHhccC--------CchhHHHHHHHHHhcC-----
Q 011249 133 MDDAQRLFDSMAER-NVISWSAMVAG-----YANCGNMKAAKEFYDRMTEK--------NSVTWVAMIAGYGKCG----- 193 (490)
Q Consensus 133 ~~~A~~~~~~~~~~-~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~----- 193 (490)
...|.++++...+. +...-..+..+ +....|.+.|+.+|+.+.+. ++.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~ 307 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI 307 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence 45677777766553 33333333222 33456777888877776541 3334445555554432
Q ss_pred ChhHHHHHHhhc
Q 011249 194 EVREAKKVFDEI 205 (490)
Q Consensus 194 ~~~~A~~~~~~~ 205 (490)
+.+.|..++...
T Consensus 308 d~~~A~~~~~~a 319 (552)
T KOG1550|consen 308 DYEKALKLYTKA 319 (552)
T ss_pred cHHHHHHHHHHH
Confidence 334455555444
No 390
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=75.88 E-value=1.2e+02 Score=32.62 Aligned_cols=258 Identities=15% Similarity=0.041 Sum_probs=145.1
Q ss_pred HHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCCh-hHHHHHHhhcCCCCHHhHHHH
Q 011249 138 RLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEV-REAKKVFDEISEPDASCWAAM 216 (490)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~l 216 (490)
.+.+.+..+|..+-...+..+.+.+..+....+...+..+|...-...+.++.+.+.. .....+...+..+|...-...
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A 704 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAA 704 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHH
Confidence 4445555677777777777777777654334444444445665555555555554322 112222233334666655556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCh
Q 011249 217 TVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYL 296 (490)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 296 (490)
+..+...+..+ ...+.. +.+ .+|...-...+.++...+..+. + ..+. ..++..+-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~---l-~~~l---~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES---V-AGAA---TDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH---H-HHHh---cCCCHHHHHHHHHHHHHhccc
Confidence 66655443211 112222 222 3455555566666666655432 1 1221 245666667777777777654
Q ss_pred HH-HHHHHhc-ccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 011249 297 DL-AWREFSR-IKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTR 374 (490)
Q Consensus 297 ~~-A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 374 (490)
+. +...+.. +..++...-...+.++...|....+...+..+.+ .++...=...+.++...+. +++...+..+.+
T Consensus 773 ~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~ 848 (897)
T PRK13800 773 GAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEALT 848 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHhc
Confidence 43 3333444 4457888888899999998887666555555554 3455555556666766665 345566655554
Q ss_pred HcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChh
Q 011249 375 VFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAG 415 (490)
Q Consensus 375 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 415 (490)
.|+..+-...+.++.+.+....+...+......++..
T Consensus 849 ----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~ 885 (897)
T PRK13800 849 ----DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDAD 885 (897)
T ss_pred ----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHH
Confidence 4677777777778877543445666665555444444
No 391
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.52 E-value=58 Score=28.87 Aligned_cols=59 Identities=12% Similarity=-0.057 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHh
Q 011249 384 HLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLE 442 (490)
Q Consensus 384 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (490)
+++.....|..+|.+.+|.++.+... .+.+...+..++..+...||--.+...++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34556678899999999999998877 555777888999999999997777777776644
No 392
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.16 E-value=19 Score=32.36 Aligned_cols=90 Identities=9% Similarity=-0.126 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcc----CCC--ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 011249 384 HLTCMVDLLGRSGQLEKAHSLIMDYK----DFC--DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANI 457 (490)
Q Consensus 384 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 457 (490)
.|.-=..-|.+..++..|...|.+.. ..| +...|+.=..+-...|++..++.-..+++..+|.+..+|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 34444556777888889998886655 122 344566666666778999999999999999999999999999999
Q ss_pred HHhcCCcchHHHHHHH
Q 011249 458 YASMGKWKDSEIVKMM 473 (490)
Q Consensus 458 ~~~~g~~~~A~~~~~~ 473 (490)
+.+..+.++|....+.
T Consensus 163 ~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9998886666655543
No 393
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=75.13 E-value=23 Score=26.11 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=26.1
Q ss_pred eehHHHHHHHHhcCChhHHHHHHHHHHh
Q 011249 69 FLWTSLIRNHVLHAHFRQSILLYAKMHR 96 (490)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 96 (490)
.-|..|+..|..+|.+++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 5699999999999999999999999877
No 394
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=74.33 E-value=65 Score=28.86 Aligned_cols=84 Identities=13% Similarity=-0.101 Sum_probs=39.7
Q ss_pred ccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcccCC-ChhHHHHHHHHHHh----cCCh
Q 011249 257 QLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSK----CGYLDLAWREFSRIKNK-DVISYSSMITAFAD----HGKS 327 (490)
Q Consensus 257 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~ 327 (490)
..+++..+...+......+.. .....+...|.. ..+...|..+|....+. .+.....|...|.. ..+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCH
Confidence 445666666666666554321 222223333332 23455566666544442 23333344444433 2255
Q ss_pred HHHHHHHHHHHHcCCC
Q 011249 328 QEALDMFLKMRNEGIE 343 (490)
Q Consensus 328 ~~a~~~~~~~~~~~~~ 343 (490)
.+|...|+++.+.|..
T Consensus 130 ~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 130 VKALKYYEKAAKLGNV 145 (292)
T ss_pred HHHHHHHHHHHHcCCh
Confidence 5555555555555433
No 395
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=74.29 E-value=92 Score=31.70 Aligned_cols=191 Identities=12% Similarity=0.096 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhcCChHHHHHHHhcccC-CChh----------HHHHHHHHHHhcCChH
Q 011249 263 MAAILAKHVDEGCCDRT---NYVSNALIHMHSKCGYLDLAWREFSRIKN-KDVI----------SYSSMITAFADHGKSQ 328 (490)
Q Consensus 263 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~----------~~~~l~~~~~~~~~~~ 328 (490)
+-..++.+|...-..|+ ..+...++-.|....+++..+++.+.+.. ||.. .|.-.+.---+-|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 33445556655433333 34455566667777777777777777665 3221 1111122222457788
Q ss_pred HHHHHHHHHHHc-C-CCCcHH-----HHHHHH--HHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCC-h
Q 011249 329 EALDMFLKMRNE-G-IEPNQV-----TFIGVL--TACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQ-L 398 (490)
Q Consensus 329 ~a~~~~~~~~~~-~-~~p~~~-----~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 398 (490)
+|+...-.+++. | +.||.. .|.-+. ..|...+..+.|.+.|++.. ...|+...-..+...+...|+ +
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhc
Confidence 888877777763 2 566654 232221 23556677788888888874 456665544444444444453 2
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 399 EKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 399 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
+...++ +.+. ..|-....+.|..++-.++|+-+.-.+ +-.-++++.+|.+.-+.|-+.
T Consensus 338 ens~El-q~Ig--------mkLn~LlgrKG~leklq~YWdV~~y~~------------asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 338 ENSLEL-QQIG--------MKLNSLLGRKGALEKLQEYWDVATYFE------------ASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred cchHHH-HHHH--------HHHHHHhhccchHHHHHHHHhHHHhhh------------hhhhccCHHHHHHHHHHHhcc
Confidence 222222 2211 112234567888888888877543322 222345666666666666554
No 396
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=74.26 E-value=71 Score=29.25 Aligned_cols=115 Identities=12% Similarity=0.002 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhh---cCChHHHHH
Q 011249 327 SQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGR---SGQLEKAHS 403 (490)
Q Consensus 327 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~ 403 (490)
.+.-+.+++++++.+ +-+......++..+.+..+.+...+-|+++... .+-+...|...+..... .-.++....
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 566778899988862 234456777788888888888888899999873 44467777776665443 234566666
Q ss_pred HHHhcc-------CC------C----Chh---hHHHHHHHHhhhCChHHHHHHHHHHHhcC
Q 011249 404 LIMDYK-------DF------C----DAG---TWGALLGACKVHVNAELGEIAARHLLELG 444 (490)
Q Consensus 404 ~~~~~~-------~~------~----~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (490)
+|.+.. .. + ... ++..+...+...|-.+.|..+++-+++.+
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 664433 11 0 111 12222233456888899999999888865
No 397
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.99 E-value=40 Score=28.87 Aligned_cols=118 Identities=9% Similarity=-0.027 Sum_probs=70.9
Q ss_pred HHhcCChHHHHHHHhcccC--CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHhcCCCChHHH
Q 011249 290 HSKCGYLDLAWREFSRIKN--KDV-ISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQV-TFIGVLTACSHGGLVEDG 365 (490)
Q Consensus 290 ~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a 365 (490)
|.....++.|+..|.+... |++ .-|..-+..+.+.++++.+..--.+.++ +.||.. ....+..+......++.|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 4445667778777766543 555 4456666777778888888777776666 577765 334455556677778888
Q ss_pred HHHHHHHHHH---cCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 366 CKQFELMTRV---FGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 366 ~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
+..+.+.... ..+++.......|..+--..=...+..++.+...
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 8888777432 2334444455555444333333444444444444
No 398
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=73.60 E-value=3.2 Score=38.94 Aligned_cols=102 Identities=5% Similarity=-0.088 Sum_probs=73.0
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHH-HHHHHHHhhcCChHHHHHHHHhcc-CCC-ChhhHHHHHHHHhhhC
Q 011249 352 VLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHL-TCMVDLLGRSGQLEKAHSLIMDYK-DFC-DAGTWGALLGACKVHV 428 (490)
Q Consensus 352 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g 428 (490)
-+..+...+.++.|...+.++.+ +.|+...| ..-..++.+.+++..|+.=+.... ..| ....|..=..+|...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34556677889999999999876 46654444 333477888999998887765555 333 3345555556778888
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 011249 429 NAELGEIAARHLLELGPEKTGNSALLAN 456 (490)
Q Consensus 429 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 456 (490)
.+.+|...|+......|+++.+-..+-.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 9999999999999999998876655543
No 399
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.56 E-value=20 Score=30.09 Aligned_cols=128 Identities=15% Similarity=0.094 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHH-cCCCCCchHHHHHHH
Q 011249 313 SYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRV-FGIKPLTEHLTCMVD 390 (490)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~ 390 (490)
+.+..++.+.+.+..++++...++-++. +| |..+-..+++.++-.|++++|..-++-..+- -...+...+|..+++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3455677888899999999999988875 45 4445666788899999999999888877541 012223455555554
Q ss_pred HHhhcCChHHHH-HHHHhcc----CCCChhhHHHHH-HHH--hhhCChHHHHHHHHHHHhcCCCCCc
Q 011249 391 LLGRSGQLEKAH-SLIMDYK----DFCDAGTWGALL-GAC--KVHVNAELGEIAARHLLELGPEKTG 449 (490)
Q Consensus 391 ~~~~~g~~~~A~-~~~~~~~----~~~~~~~~~~l~-~~~--~~~g~~~~a~~~~~~~~~~~p~~~~ 449 (490)
+ +.+. ++|..-. .-.....|...+ .+. ..-|.-+....+-+.+.+..|..+.
T Consensus 81 ~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 81 C-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred H-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 3 2222 2343222 111233444443 332 2233445556666677776666443
No 400
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=72.97 E-value=37 Score=25.45 Aligned_cols=20 Identities=10% Similarity=0.141 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhcCChHHHHH
Q 011249 384 HLTCMVDLLGRSGQLEKAHS 403 (490)
Q Consensus 384 ~~~~l~~~~~~~g~~~~A~~ 403 (490)
++..|..++...|++++++.
T Consensus 57 chA~Ls~A~~~Lgry~e~L~ 76 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQ 76 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHH
Confidence 34455666666666666544
No 401
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.64 E-value=11 Score=25.73 Aligned_cols=17 Identities=6% Similarity=0.100 Sum_probs=7.6
Q ss_pred HHHHHHhhcCChHHHHH
Q 011249 387 CMVDLLGRSGQLEKAHS 403 (490)
Q Consensus 387 ~l~~~~~~~g~~~~A~~ 403 (490)
.++.+|...|++.++++
T Consensus 48 ~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 48 YLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 402
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=72.32 E-value=21 Score=24.94 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=15.0
Q ss_pred CChHHHHHHHHHhccCCchhHHHHHHHHHhcCC
Q 011249 162 GNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGE 194 (490)
Q Consensus 162 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (490)
|+.+.|.+++..+. ..+..|...+.++...|.
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 44444444444444 444444444444444443
No 403
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=72.06 E-value=76 Score=28.64 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCCCCc
Q 011249 432 LGEIAARHLLELGPEKTG 449 (490)
Q Consensus 432 ~a~~~~~~~~~~~p~~~~ 449 (490)
.|++.+.++.+.+|.-|.
T Consensus 380 ~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHHHHHHHhhcCCCCcH
Confidence 467777788888877554
No 404
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=71.86 E-value=24 Score=26.07 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011249 212 CWAAMTVCYVQNGYAKAAIEMYKVMRQ 238 (490)
Q Consensus 212 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 238 (490)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577788888888888888888887766
No 405
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.16 E-value=54 Score=28.88 Aligned_cols=83 Identities=6% Similarity=-0.075 Sum_probs=43.7
Q ss_pred HHHHHhcCChHHHHHHH----hcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-----hc
Q 011249 287 IHMHSKCGYLDLAWREF----SRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTA-----CS 357 (490)
Q Consensus 287 ~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-----~~ 357 (490)
|.+++..+++.++..+. +.-.+-.+.....-|-.|.+.+.+..+.++-..-....-.-+...|..++.. +.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 55666667766665433 2222223444555555666777776666666655542111122235444443 33
Q ss_pred CCCChHHHHHHH
Q 011249 358 HGGLVEDGCKQF 369 (490)
Q Consensus 358 ~~g~~~~a~~~~ 369 (490)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 456677766665
No 406
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.99 E-value=21 Score=29.73 Aligned_cols=35 Identities=14% Similarity=-0.043 Sum_probs=18.7
Q ss_pred CCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCC
Q 011249 411 FCDAGTWGALLGACKVHVNAELGEIAARHLLELGP 445 (490)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 445 (490)
.|++.++..++.++...|+.++|.+..+++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44555555555555555555555555555555555
No 407
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.88 E-value=73 Score=28.63 Aligned_cols=95 Identities=12% Similarity=0.111 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHH
Q 011249 312 ISYSSMITAFADHGKSQEALDMFLKMRNEG---IEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCM 388 (490)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 388 (490)
.+...++..-....+++.++..+-++.... ..|+. +-...++.|.+ -++++++.++..=.. +|+-||..+++.+
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIq-YGiF~dqf~~c~l 141 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQ-YGIFPDQFTFCLL 141 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcch-hccccchhhHHHH
Confidence 344555555555678888888888877531 11222 22233343333 466788888777777 7999999999999
Q ss_pred HHHHhhcCChHHHHHHHHhcc
Q 011249 389 VDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 389 ~~~~~~~g~~~~A~~~~~~~~ 409 (490)
++.+.+.+++.+|..+...|.
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHH
Confidence 999999999999988876655
No 408
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=69.96 E-value=17 Score=27.87 Aligned_cols=69 Identities=19% Similarity=0.028 Sum_probs=51.2
Q ss_pred CCChhhHHHHHHHHhhh---CChHHHHHHHHHHHh-cCCC-CCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 411 FCDAGTWGALLGACKVH---VNAELGEIAARHLLE-LGPE-KTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 411 ~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
.++..+--.+.+++.+. .|..+.+.+++...+ -.|+ .......|+-.+.+.|+|+.++++.+.+.+..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 45555666677777654 467788999999997 3354 345666778889999999999999998877643
No 409
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=69.87 E-value=13 Score=26.55 Aligned_cols=53 Identities=8% Similarity=-0.049 Sum_probs=33.1
Q ss_pred hhhCChHHHHHHHHHHHhcCC----CC-----CchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 425 KVHVNAELGEIAARHLLELGP----EK-----TGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~p----~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
.+.||+..|.+.+.+...... .. ..+...++.+....|++++|...+++..+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456777777666666554221 11 233455677777888888888888776554
No 410
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.74 E-value=26 Score=26.47 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHH
Q 011249 329 EALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMV 389 (490)
Q Consensus 329 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 389 (490)
+..+-+..+..-.+.|++.....-+++|.+.+++..|..+|+-++.+ ..+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 34455556666667888888888888888888888888888888774 333333454444
No 411
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=69.17 E-value=6.6 Score=33.08 Aligned_cols=64 Identities=28% Similarity=0.243 Sum_probs=43.7
Q ss_pred HHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHH
Q 011249 391 LLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALL 454 (490)
Q Consensus 391 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 454 (490)
+..+.|+.+.|.+++.+.. .+.....|-.+...-.+.|+++.|.+.|++.++++|++...-..-
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~k 69 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALK 69 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhh
Confidence 4456677777777777665 233455777777777777888888888888888887765544333
No 412
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=69.13 E-value=74 Score=27.30 Aligned_cols=49 Identities=18% Similarity=0.061 Sum_probs=30.6
Q ss_pred CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 011249 410 DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYA 459 (490)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 459 (490)
..|.+.....++..|.. +++++|.+++.++.+.+-....+..++.++..
T Consensus 235 d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K 283 (333)
T KOG0991|consen 235 DEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDIITTLFRVVK 283 (333)
T ss_pred CCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45677666667766544 57788888888877766444444444444443
No 413
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.02 E-value=32 Score=25.99 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhc
Q 011249 229 AIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEG 274 (490)
Q Consensus 229 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 274 (490)
..+-++.+..-.+.|++.....-+++|.+.+|+..|..+++-++..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555555666777777777777777777777777777766544
No 414
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=68.95 E-value=18 Score=20.32 Aligned_cols=17 Identities=6% Similarity=-0.326 Sum_probs=7.8
Q ss_pred HHHHHhhhCChHHHHHH
Q 011249 420 LLGACKVHVNAELGEIA 436 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~ 436 (490)
+.-.+...|++++|+++
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33344445555555555
No 415
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.78 E-value=22 Score=29.63 Aligned_cols=57 Identities=16% Similarity=0.020 Sum_probs=43.1
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 353 LTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 353 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
+......++.+......+.+.+.....|++.+|..++..+...|+.++|.+..+++.
T Consensus 115 l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 115 LLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333345666666666666666655678899999999999999999999999888876
No 416
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=68.75 E-value=83 Score=27.75 Aligned_cols=159 Identities=14% Similarity=0.027 Sum_probs=71.9
Q ss_pred hcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHH----HHHHHcCCCCcHHHHHHHHHHhcCCCChH-HHH
Q 011249 292 KCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMF----LKMRNEGIEPNQVTFIGVLTACSHGGLVE-DGC 366 (490)
Q Consensus 292 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~a~ 366 (490)
+++++++|++++..- ...+.+.|+...|-++- +-..+.+..++......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345666666655432 12344555544444333 33333455666655555555443322111 122
Q ss_pred HHHHHHHHH--cCCC--CCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHh
Q 011249 367 KQFELMTRV--FGIK--PLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLE 442 (490)
Q Consensus 367 ~~~~~~~~~--~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (490)
++.+.+.+= .+-. -++.....+...|.+.|++.+|...|-.-. .++...+..++......|
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~-------------- 135 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKG-------------- 135 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhc--------------
Confidence 233333220 1222 346777788889999999988888775443 222222212222222222
Q ss_pred cCCCCCchHHH-HHHHHHhcCCcchHHHHHHHhhhc
Q 011249 443 LGPEKTGNSAL-LANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 443 ~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
.|.....|.. .+--|.-.|+...|...++...+.
T Consensus 136 -~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 136 -YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2333333332 333466667888888877766654
No 417
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=68.72 E-value=23 Score=27.67 Aligned_cols=64 Identities=16% Similarity=0.068 Sum_probs=43.1
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcc
Q 011249 399 EKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWK 465 (490)
Q Consensus 399 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 465 (490)
+.|.++.+-|. ...............|++..|.++.+.++..+|+|..+....+.+|.+.|...
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 44555555543 22333334455677899999999999999999999999999998888776543
No 418
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=68.59 E-value=70 Score=27.70 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhc-cCChHHHHHHHHHHHh
Q 011249 214 AAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQ-LGDVEMAAILAKHVDE 273 (490)
Q Consensus 214 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~ 273 (490)
-.++...-+.|+++++...++++...+...+..-.+.+..+|-. .|....+++++..+..
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 34667788889999999999999888777777666666666532 3445556666655543
No 419
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=68.57 E-value=1.4e+02 Score=30.34 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=32.6
Q ss_pred cCCCChHHHHHHHHHHHHHcCCCCC-------chHHHHHHHHHhhcCChHHHHHHHH
Q 011249 357 SHGGLVEDGCKQFELMTRVFGIKPL-------TEHLTCMVDLLGRSGQLEKAHSLIM 406 (490)
Q Consensus 357 ~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 406 (490)
+-.+++..|...++.+.....-.|+ +..+...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3568898999999988874332222 2222223334456799999999997
No 420
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.36 E-value=3e+02 Score=34.07 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=11.8
Q ss_pred HHHHhCCChHHHHHHHHHhc
Q 011249 156 AGYANCGNMKAAKEFYDRMT 175 (490)
Q Consensus 156 ~~~~~~~~~~~a~~~~~~~~ 175 (490)
..|.+.|.+++|..+|++..
T Consensus 2490 ~s~eQ~G~~e~AQ~lyekaq 2509 (3550)
T KOG0889|consen 2490 LSYEQLGFWEEAQSLYEKAQ 2509 (3550)
T ss_pred HHHHHhhhHHHHhhHHHHHH
Confidence 34555666666666666554
No 421
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=67.59 E-value=7.9 Score=24.13 Aligned_cols=30 Identities=17% Similarity=0.039 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 450 NSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
.+..++-++.+.|++++|.+..+.+.+..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 355677899999999999999999987654
No 422
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.53 E-value=1.8 Score=38.56 Aligned_cols=64 Identities=13% Similarity=0.001 Sum_probs=57.9
Q ss_pred HhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccccCCCccc
Q 011249 424 CKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKKSPGCSW 487 (490)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 487 (490)
....|.++.|++.+..+++++|....+|..-+.++.+.+++..|++-+....+.+....-|+.|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf 187 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF 187 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch
Confidence 3467889999999999999999999999999999999999999999999998888877777665
No 423
>PF15469 Sec5: Exocyst complex component Sec5
Probab=66.37 E-value=19 Score=29.66 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=19.1
Q ss_pred CCcchHHHHHHHhhhcccccCCCccccC
Q 011249 462 GKWKDSEIVKMMISETEKKKSPGCSWIS 489 (490)
Q Consensus 462 g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 489 (490)
...++..+++..+.+.++..+|.+.|++
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 3455666667777777777777777764
No 424
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=66.14 E-value=88 Score=27.09 Aligned_cols=47 Identities=15% Similarity=0.028 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHh-----cCCCCCchH----HHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 431 ELGEIAARHLLE-----LGPEKTGNS----ALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 431 ~~a~~~~~~~~~-----~~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
+.|.+.|+++.+ +.|.+|.-+ +.-+..|.-.|+.++|.++.++..+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 566666666654 346655422 22223345578888888877766544
No 425
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=65.68 E-value=37 Score=31.92 Aligned_cols=88 Identities=14% Similarity=0.126 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhccCC----------------chhHHHHHHHHHhcCChhHHHHHHhhcCC------
Q 011249 150 SWSAMVAGYANCGNMKAAKEFYDRMTEKN----------------SVTWVAMIAGYGKCGEVREAKKVFDEISE------ 207 (490)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------ 207 (490)
.-..++..+....++.+.++..+....|+ -.+...|++.++-.||+..|+++++.+.-
T Consensus 77 ~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~ 156 (404)
T PF10255_consen 77 SVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLY 156 (404)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhh
Confidence 33345566666777777666666654331 12345677788888888888888877642
Q ss_pred -----CCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011249 208 -----PDASCWAAMTVCYVQNGYAKAAIEMYKVMR 237 (490)
Q Consensus 208 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 237 (490)
-...++..+.-+|.-.+++.+|++.|....
T Consensus 157 ~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 157 TKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred ccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233456667778888888888888887764
No 426
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=65.50 E-value=51 Score=24.15 Aligned_cols=86 Identities=12% Similarity=0.061 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011249 260 DVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRN 339 (490)
Q Consensus 260 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (490)
..++|..+.+.+...+. ....+-..-+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45666666666666542 223333333445667777777744444444467666655543 456666777776666655
Q ss_pred cCCCCcHHHH
Q 011249 340 EGIEPNQVTF 349 (490)
Q Consensus 340 ~~~~p~~~~~ 349 (490)
+| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 43 3443333
No 427
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.18 E-value=98 Score=27.29 Aligned_cols=159 Identities=16% Similarity=0.109 Sum_probs=72.2
Q ss_pred hcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHH----HHHHHHHcCcccChhhHHHHHHHHhccCChH-HHH
Q 011249 191 KCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIE----MYKVMRQENVRISEVAMVGAISACTQLGDVE-MAA 265 (490)
Q Consensus 191 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~a~ 265 (490)
+.+++++|++++.. =...+.+.|+..-|-+ +++-..+.+.+++......++..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666655532 2233444555443333 2333333455555555455555444332211 122
Q ss_pred HHHHHHH---hcC--CCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011249 266 ILAKHVD---EGC--CDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNE 340 (490)
Q Consensus 266 ~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (490)
++.+.+. +.+ ...++.....+...|.+.|++.+|+..|-.-..++...+..++......|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 2222222 111 2246777888889999999999888877554443333332233222222222222
Q ss_pred CCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011249 341 GIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRV 375 (490)
Q Consensus 341 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 375 (490)
+...-..++. |...++...|...++...+.
T Consensus 141 ----dlfi~RaVL~-yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ----DLFIARAVLQ-YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ----HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 2222233333 44567888888887777664
No 428
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.85 E-value=77 Score=25.97 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=30.7
Q ss_pred HHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHH
Q 011249 421 LGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEI 469 (490)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 469 (490)
+..|.+.|.+++|.+++++..+ +|++...-.-|..+-.+.+.+...++
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lq 165 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQ 165 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHH
Confidence 3467888888888888888877 77766665555544444444444443
No 429
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=64.11 E-value=49 Score=23.43 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=18.2
Q ss_pred CCCchHHHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 379 KPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 379 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
|.|...-..+...+...|++++|++.+-.+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555566667777777777776665544
No 430
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.82 E-value=32 Score=20.88 Aligned_cols=36 Identities=11% Similarity=0.071 Sum_probs=30.2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011249 77 NHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNA 112 (490)
Q Consensus 77 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 112 (490)
...++|-..++..++++|.+.|+..+...+..++..
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 345778888999999999999999888888877763
No 431
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.58 E-value=1.4e+02 Score=28.15 Aligned_cols=52 Identities=4% Similarity=0.015 Sum_probs=27.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHH--HHHHHHHHhc--CCCChHHHHHHHHHHHH
Q 011249 322 ADHGKSQEALDMFLKMRNEGIEPNQV--TFIGVLTACS--HGGLVEDGCKQFELMTR 374 (490)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 374 (490)
.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556666666666666654 333333 3333333332 34455566666665554
No 432
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.49 E-value=1.4e+02 Score=28.05 Aligned_cols=57 Identities=9% Similarity=0.149 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhhcCC------CCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011249 181 TWVAMIAGYGKCGEVREAKKVFDEISE------PDASCWAAMTVCYVQNGYAKAAIEMYKVMR 237 (490)
Q Consensus 181 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 237 (490)
.+.-+...|..+|+++.|++.|.+... .....|-.+|.+-.-.|+|.....+..+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 345555556666666666666655443 223344455555555555555555554444
No 433
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=62.43 E-value=28 Score=32.73 Aligned_cols=54 Identities=11% Similarity=0.004 Sum_probs=29.7
Q ss_pred HHHHHhhcCChHHHHHHHHhccC----------CCChhhHHHHHHHHhhhCChHHHHHHHHHHH
Q 011249 388 MVDLLGRSGQLEKAHSLIMDYKD----------FCDAGTWGALLGACKVHVNAELGEIAARHLL 441 (490)
Q Consensus 388 l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (490)
|++..+-.|++..|+++++.+.. .....++-.+..+|...+++..|++.|...+
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666665541 1123344455555555666666666665554
No 434
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=62.25 E-value=21 Score=30.23 Aligned_cols=52 Identities=8% Similarity=0.077 Sum_probs=39.7
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 356 CSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 356 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
..+.++.+.+.+++.+... -.+.....|..+...-.+.|+++.|.+-|++..
T Consensus 5 ~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L 56 (287)
T COG4976 5 LAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL 56 (287)
T ss_pred hcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHH
Confidence 4567788888888888875 445557777778887888888888888887766
No 435
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=61.94 E-value=22 Score=33.70 Aligned_cols=104 Identities=12% Similarity=0.042 Sum_probs=73.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHH-HHHhcCCCChHHHHHHHHHHHHHcCCCCC-chHHHHHHHHHhhc
Q 011249 318 ITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGV-LTACSHGGLVEDGCKQFELMTRVFGIKPL-TEHLTCMVDLLGRS 395 (490)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 395 (490)
+..+...+.++.|..++.++++ +.||...|-.. ..++.+.+++..|+.=..++.+. .|+ ...|..-..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 4455677899999999999999 58877655433 37788999999998888777762 233 33333334456666
Q ss_pred CChHHHHHHHHhcc-CCCChhhHHHHHHHHhh
Q 011249 396 GQLEKAHSLIMDYK-DFCDAGTWGALLGACKV 426 (490)
Q Consensus 396 g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~ 426 (490)
+.+.+|...|+... ..|+..-....+.-|-.
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 78888888887776 66777777767665533
No 436
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=61.56 E-value=13 Score=33.02 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=37.2
Q ss_pred CCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHH
Q 011249 65 CKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSV 109 (490)
Q Consensus 65 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 109 (490)
|+....|+.-|....+.||.++|++++++..+.|+.--..+|...
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 455466899999999999999999999999999987655555433
No 437
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.78 E-value=14 Score=23.99 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=11.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 011249 215 AMTVCYVQNGYAKAAIEMYKVMR 237 (490)
Q Consensus 215 ~l~~~~~~~g~~~~A~~~~~~~~ 237 (490)
.+|.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555555544
No 438
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=59.55 E-value=56 Score=24.90 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=32.5
Q ss_pred HHHHHHHHHHh--cCCCCCchHHHHHHHHHhcCCcchHHHHHH
Q 011249 432 LGEIAARHLLE--LGPEKTGNSALLANIYASMGKWKDSEIVKM 472 (490)
Q Consensus 432 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 472 (490)
...++|..+.. ++-..+.+|...+..+...|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35667777766 446677888888989999999999999886
No 439
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=59.39 E-value=37 Score=24.17 Aligned_cols=26 Identities=15% Similarity=0.010 Sum_probs=19.7
Q ss_pred HHHHHHhhhCChHHHHHHHHHHHhcC
Q 011249 419 ALLGACKVHVNAELGEIAARHLLELG 444 (490)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (490)
.+.......|++++|...+++++++-
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34556677889999999998888754
No 440
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.06 E-value=88 Score=32.47 Aligned_cols=158 Identities=14% Similarity=0.107 Sum_probs=101.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHH
Q 011249 250 GAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQE 329 (490)
Q Consensus 250 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 329 (490)
++|..+.+.|-.+-|..+.++ ..+ -......+|+++.|++.-.++. +..+|..|+..-..+|+.+-
T Consensus 625 aiIaYLqKkgypeiAL~FVkD---------~~t---RF~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~I 690 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKD---------ERT---RFELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQI 690 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecC---------cch---heeeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHH
Confidence 345555666666666655332 111 1234467799999988877665 45689999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 330 ALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 330 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
|+..|++... |..|--.|.-.|+.++-.+..+.+... .|.... ...-.-.|+.++=.++++...
T Consensus 691 aEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r----~D~~~~---~qnalYl~dv~ervkIl~n~g 754 (1202)
T KOG0292|consen 691 AEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR----NDATGQ---FQNALYLGDVKERVKILENGG 754 (1202)
T ss_pred HHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh----hhhHHH---HHHHHHhccHHHHHHHHHhcC
Confidence 9999998764 333444567789988877766666442 222211 111122478888888887765
Q ss_pred CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhc
Q 011249 410 DFCDAGTWGALLGACKVHVNAELGEIAARHLLEL 443 (490)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (490)
..|- .|. ....+|.-++|.++.++.-..
T Consensus 755 ~~~l--ayl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 755 QLPL--AYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred cccH--HHH----HHhhcCcHHHHHHHHHhhccc
Confidence 2221 121 124578889999999888763
No 441
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.23 E-value=62 Score=22.70 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=19.4
Q ss_pred hcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHH
Q 011249 292 KCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQE 329 (490)
Q Consensus 292 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 329 (490)
..|+.+.|.+++..+. ..+..|..+++++...|.-+-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHEL 84 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhh
Confidence 3355555555555555 455555555555555554433
No 442
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=57.45 E-value=53 Score=22.90 Aligned_cols=33 Identities=9% Similarity=0.235 Sum_probs=14.5
Q ss_pred CChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCC
Q 011249 193 GEVREAKKVFDEISEPDASCWAAMTVCYVQNGY 225 (490)
Q Consensus 193 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 225 (490)
.+.+.+.++++.++...+.+|.....++...|.
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 334444444444444444444444444444443
No 443
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=57.20 E-value=29 Score=30.93 Aligned_cols=80 Identities=5% Similarity=-0.124 Sum_probs=51.3
Q ss_pred CCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHH-HHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHH
Q 011249 377 GIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGA-LLGACKVHVNAELGEIAARHLLELGPEKTGNSAL 453 (490)
Q Consensus 377 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 453 (490)
....|+..|...+.-..+.|.+.+...++.+.. .+.++..|.. -..-+...++++.+..+|.+.+.++|++|.+|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 344555556555544455566666666765554 3335555543 2233566789999999999999999998887765
Q ss_pred HHH
Q 011249 454 LAN 456 (490)
Q Consensus 454 l~~ 456 (490)
..+
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 443
No 444
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.03 E-value=44 Score=33.09 Aligned_cols=85 Identities=12% Similarity=-0.029 Sum_probs=51.4
Q ss_pred hhcCChHHHHHHHHh-ccCCC-C------hhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 011249 393 GRSGQLEKAHSLIMD-YKDFC-D------AGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKW 464 (490)
Q Consensus 393 ~~~g~~~~A~~~~~~-~~~~~-~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 464 (490)
.+..++..+.+.|.. +..-| | ......+.-.|....+.++|.++++++.+.+|.++-.-.....+....|.-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 345556666666532 22111 1 223444555566677777777777777777777666666666666677777
Q ss_pred chHHHHHHHhhhc
Q 011249 465 KDSEIVKMMISET 477 (490)
Q Consensus 465 ~~A~~~~~~~~~~ 477 (490)
++|+.........
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777665543
No 445
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.81 E-value=39 Score=21.85 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 011249 226 AKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDE 273 (490)
Q Consensus 226 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 273 (490)
.+...++++.++.. +.|-.-...++.++...|++++|.++.+.+.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555555432 33445555667777777777777777766643
No 446
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=56.41 E-value=88 Score=23.87 Aligned_cols=43 Identities=12% Similarity=0.213 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCCCc-HHHHHHHHHHhcCCCChHHHHHHHHH
Q 011249 329 EALDMFLKMRNEGIEPN-QVTFIGVLTACSHGGLVEDGCKQFEL 371 (490)
Q Consensus 329 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 371 (490)
.+.++|..|...|+--. ...|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55555555555443332 23444444455555555555555543
No 447
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=55.72 E-value=48 Score=29.08 Aligned_cols=58 Identities=26% Similarity=0.190 Sum_probs=46.3
Q ss_pred HHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 420 LLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
+-.++.+.++++.|....++.+..+|+++.-..--+-+|.+.|.+.-|++-+....+.
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 3356677888888888888888888888888888888888888888888887775544
No 448
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=55.58 E-value=3e+02 Score=29.77 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcC--ChHHHHHHHhcccCC
Q 011249 282 VSNALIHMHSKCG--YLDLAWREFSRIKNK 309 (490)
Q Consensus 282 ~~~~l~~~~~~~~--~~~~A~~~~~~~~~~ 309 (490)
....++.+|.+.+ ++++|+....++.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3445666666666 666666666666543
No 449
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.33 E-value=15 Score=28.02 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=27.3
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011249 77 NHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNA 112 (490)
Q Consensus 77 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 112 (490)
.+-..|.-.+|-.+|++|.+.|-+||. |+.|+..
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 344567888999999999999999986 6666664
No 450
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=55.04 E-value=82 Score=23.15 Aligned_cols=81 Identities=12% Similarity=0.112 Sum_probs=47.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhC
Q 011249 82 AHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANC 161 (490)
Q Consensus 82 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 161 (490)
...++|..+.+.+...+. ......+|+. ..+.+.|++++|+..=.....||...|-.|- -.+.
T Consensus 20 HcH~EA~tIa~wL~~~~~---~~E~v~lIr~------------~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~kl 82 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE---MEEVVALIRL------------SSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKL 82 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT---THHHHHHHHH------------HHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHC
T ss_pred HHHHHHHHHHHHHHhCCc---HHHHHHHHHH------------HHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhh
Confidence 367888888888877643 2333344443 2367888888885444444457777776554 3567
Q ss_pred CChHHHHHHHHHhccCCc
Q 011249 162 GNMKAAKEFYDRMTEKNS 179 (490)
Q Consensus 162 ~~~~~a~~~~~~~~~~~~ 179 (490)
|--+++...+.++.....
T Consensus 83 GL~~~~e~~l~rla~~g~ 100 (116)
T PF09477_consen 83 GLASALESRLTRLASSGS 100 (116)
T ss_dssp T-HHHHHHHHHHHCT-SS
T ss_pred ccHHHHHHHHHHHHhCCC
Confidence 777777777776665433
No 451
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.43 E-value=1.9e+02 Score=27.18 Aligned_cols=57 Identities=14% Similarity=0.185 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhccC------CchhHHHHHHHHHhcCChhHHHHHHhhcC
Q 011249 150 SWSAMVAGYANCGNMKAAKEFYDRMTEK------NSVTWVAMIAGYGKCGEVREAKKVFDEIS 206 (490)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 206 (490)
.+.-+...|...|+++.|++.|-+...- -...|..++..-+-.|+|........+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 5666777777788888888888775421 33345566666666777776666655544
No 452
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=53.48 E-value=2e+02 Score=27.13 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=27.8
Q ss_pred CHHhHHHHHHHHHhc---CChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccC
Q 011249 209 DASCWAAMTVCYVQN---GYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLG 259 (490)
Q Consensus 209 ~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 259 (490)
+-..+..+++++.++ .+++.|+-++-+|...|-.|....-..++-++...|
T Consensus 245 ~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 245 DGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 334444556665543 556677777777776665555444444444444433
No 453
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=53.32 E-value=3.1e+02 Score=29.19 Aligned_cols=72 Identities=8% Similarity=-0.037 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCCh
Q 011249 327 SQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQL 398 (490)
Q Consensus 327 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 398 (490)
.+.-.+.|.++.+.--.-|..++..-...+...|++..|.+++.++.+..+-.++...+..++..+...|--
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 344445555555421122334444444445556777777777777777666677777776666666666644
No 454
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=53.31 E-value=3.2e+02 Score=29.43 Aligned_cols=85 Identities=13% Similarity=0.175 Sum_probs=53.7
Q ss_pred HHHHHHhCCChHHHHHHHHHhccC---CchhHH-------HHHHHHHhcC---ChhHHHHHHhhcCC--CCHHhHHHHHH
Q 011249 154 MVAGYANCGNMKAAKEFYDRMTEK---NSVTWV-------AMIAGYGKCG---EVREAKKVFDEISE--PDASCWAAMTV 218 (490)
Q Consensus 154 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-------~l~~~~~~~~---~~~~A~~~~~~~~~--~~~~~~~~l~~ 218 (490)
+=+++.....++.|+..|+++... -...|. +++.-....| .+++|+.-|+.+.. .-+--|---.-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKAL 560 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHH
Confidence 346677777888888888888753 122221 2222222333 47788888888875 23344555566
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 011249 219 CYVQNGYAKAAIEMYKVMRQ 238 (490)
Q Consensus 219 ~~~~~g~~~~A~~~~~~~~~ 238 (490)
+|.+.|++++-++.+.-..+
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~ 580 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALK 580 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 78888888887777666554
No 455
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=53.05 E-value=1.1e+02 Score=24.03 Aligned_cols=53 Identities=8% Similarity=0.122 Sum_probs=36.8
Q ss_pred CCHHhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCC
Q 011249 208 PDASCWAAMTVCYVQNGY-AKAAIEMYKVMRQENVRISEVAMVGAISACTQLGD 260 (490)
Q Consensus 208 ~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 260 (490)
.+...|..+..+..+..- ---+..+|+.|++.+.+++...|..++.++.+...
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Confidence 345567777777755554 23456777888877778888888888887766533
No 456
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=52.15 E-value=24 Score=31.26 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=22.9
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhc
Q 011249 358 HGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDY 408 (490)
Q Consensus 358 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 408 (490)
+.|+.++|..+|+...+ --+.++.....+.......+++-+|-.+|-+.
T Consensus 128 ~~Gk~ekA~~lfeHAla--laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALA--LAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred hccchHHHHHHHHHHHh--cCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 45666666666666554 22223333333333333344444555544333
No 457
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.00 E-value=36 Score=30.34 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 011249 313 SYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVL 353 (490)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 353 (490)
-|+..|..-.+.||+++|+.+++++.+.|+.--..+|..-+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788888889999999999999999888765555654433
No 458
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=51.82 E-value=1.8e+02 Score=26.16 Aligned_cols=73 Identities=11% Similarity=0.201 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhh----------cCChHH
Q 011249 331 LDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGR----------SGQLEK 400 (490)
Q Consensus 331 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~ 400 (490)
.++|+.+.+.++.|.-..|.-+.-.+.+.=.+.+.+.+|+.+..+ +.-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 457777777778887777776666666666777788888877652 2224444444432 466666
Q ss_pred HHHHHHhcc
Q 011249 401 AHSLIMDYK 409 (490)
Q Consensus 401 A~~~~~~~~ 409 (490)
-+++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 666666544
No 459
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=51.31 E-value=2e+02 Score=26.37 Aligned_cols=104 Identities=9% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCC-chHHHHHHHHHhhcCChHHHHHHHHhcc------CCCChhhH--HHHHHHHhhhCChHHHHHH
Q 011249 366 CKQFELMTRVFGIKPL-TEHLTCMVDLLGRSGQLEKAHSLIMDYK------DFCDAGTW--GALLGACKVHVNAELGEIA 436 (490)
Q Consensus 366 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~--~~l~~~~~~~g~~~~a~~~ 436 (490)
.+++......+..+.+ ......++....+.++.++|+++++++. ..|+...| ...+..+...||.+++.+.
T Consensus 58 l~lY~NFvsefe~kINplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ 137 (380)
T KOG2908|consen 58 LQLYLNFVSEFETKINPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKL 137 (380)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHH
Q ss_pred HHHHHh-------cCC-CCCchHHHHHHHHHhcCCcchHHH
Q 011249 437 ARHLLE-------LGP-EKTGNSALLANIYASMGKWKDSEI 469 (490)
Q Consensus 437 ~~~~~~-------~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 469 (490)
++...+ ..| -...+|..=...|...|++..+.+
T Consensus 138 ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 138 LDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHH
No 460
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=51.14 E-value=93 Score=24.48 Aligned_cols=62 Identities=8% Similarity=0.073 Sum_probs=40.4
Q ss_pred HHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 011249 232 MYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCG 294 (490)
Q Consensus 232 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 294 (490)
+.+.+.+.|++++.. -..++..+...++.-.|..+++.+.+.+.+.+..+...-++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 445566677776554 34566666777777888888888888776665554444455555555
No 461
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.01 E-value=3.7e+02 Score=29.42 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC----chHHHHHHHHHhhcCChHHHHHHH
Q 011249 349 FIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL----TEHLTCMVDLLGRSGQLEKAHSLI 405 (490)
Q Consensus 349 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 405 (490)
|..+++.+...+..+.+.++-..+.+ ..+++ ..+++.+.......|.+-+|.+.+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe--~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIE--NLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 44444555555555555555555444 22222 222334444444455555554444
No 462
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=50.22 E-value=69 Score=24.09 Aligned_cols=62 Identities=16% Similarity=-0.005 Sum_probs=41.7
Q ss_pred hhHHHHHHHHhhhCChHHHHHHHHHHHh-------cCCCCCc----hHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 415 GTWGALLGACKVHVNAELGEIAARHLLE-------LGPEKTG----NSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
..+..|..++...|++++++...++++. ++.+.-. +..+-+.++...|+.++|...|+..-+
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3455667788899999988887777764 3333222 334456678889999999999986433
No 463
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.33 E-value=61 Score=28.31 Aligned_cols=17 Identities=18% Similarity=0.018 Sum_probs=7.6
Q ss_pred hcCCCChHHHHHHHHHH
Q 011249 356 CSHGGLVEDGCKQFELM 372 (490)
Q Consensus 356 ~~~~g~~~~a~~~~~~~ 372 (490)
|...|++++|.++|+.+
T Consensus 188 y~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 44444444444444444
No 464
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.12 E-value=63 Score=28.22 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=44.9
Q ss_pred HHHHHHhhcCCC--CHHhHHHHHHHHHhcCChHHHHHHHHHHHH----cC-cccChhhHHHHHHHHhccCChHHHHHHHH
Q 011249 197 EAKKVFDEISEP--DASCWAAMTVCYVQNGYAKAAIEMYKVMRQ----EN-VRISEVAMVGAISACTQLGDVEMAAILAK 269 (490)
Q Consensus 197 ~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 269 (490)
.|...|...... -......+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+....+--
T Consensus 163 ~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 163 KAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 444555444432 122334566777888888888888877742 22 23445566677777778888777666544
Q ss_pred HH
Q 011249 270 HV 271 (490)
Q Consensus 270 ~~ 271 (490)
++
T Consensus 243 eL 244 (247)
T PF11817_consen 243 EL 244 (247)
T ss_pred HH
Confidence 33
No 465
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.94 E-value=2.6e+02 Score=27.10 Aligned_cols=293 Identities=13% Similarity=0.061 Sum_probs=151.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHhccCCC--CCCceeh-----HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHH
Q 011249 37 YAQFLIRLLQLPGDNLSYARQVFDQIPK--CKTQFLW-----TSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSV 109 (490)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 109 (490)
.++.|.+.|....+++..|..++++..+ .+. ..| ..|+..+.-..|+..|.+++.---+. -.|-...|..+
T Consensus 90 a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~-p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~ 167 (629)
T KOG2300|consen 90 AASLLAHLHHQLAQSFPPAKALLRKAIELSQSV-PYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRM 167 (629)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHH
Confidence 4567778888877448888888877642 222 222 34566677788999999986433222 22333344443
Q ss_pred HHHhcCCCChHHHHHHHHHhcCCHH---HHHHHHhhcCC---CCHh--------HHHHHHHHHHhCCChHHHHHHHHHhc
Q 011249 110 LNACARVPSLLEAVICGYTKIGLMD---DAQRLFDSMAE---RNVI--------SWSAMVAGYANCGNMKAAKEFYDRMT 175 (490)
Q Consensus 110 l~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~---~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~ 175 (490)
+... +.........+.. .+.+....|.+ +|.. -.+.-+.-|.-.|+...+...++++.
T Consensus 168 ~ftl--------s~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ 239 (629)
T KOG2300|consen 168 LFTL--------SMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQ 239 (629)
T ss_pred HHHH--------HHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHH
Confidence 3321 1111222223333 34444444433 2221 12223445667888888888888776
Q ss_pred cC-------------------CchhH------------------HHHHHHHHh--cCChhHHHHHHhhcCCCC--HHh--
Q 011249 176 EK-------------------NSVTW------------------VAMIAGYGK--CGEVREAKKVFDEISEPD--ASC-- 212 (490)
Q Consensus 176 ~~-------------------~~~~~------------------~~l~~~~~~--~~~~~~A~~~~~~~~~~~--~~~-- 212 (490)
.. .+..+ ..+..+|.+ .+-.|+++...++.++.+ ...
T Consensus 240 ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srils 319 (629)
T KOG2300|consen 240 DSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILS 319 (629)
T ss_pred HHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 31 11111 111111211 112334444444444422 222
Q ss_pred ------HHHHHHHHHhcCChHHHHHHHHHHHHcCc-ccC--h------hhHHHHHHHHhccCChHHHHHHHHHHHhcCCC
Q 011249 213 ------WAAMTVCYVQNGYAKAAIEMYKVMRQENV-RIS--E------VAMVGAISACTQLGDVEMAAILAKHVDEGCCD 277 (490)
Q Consensus 213 ------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 277 (490)
...++.+-.-.|++.+|++-...|.+.-. .|. . .....+.-.|...|.++.|+..|....+.--.
T Consensus 320 m~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~ 399 (629)
T KOG2300|consen 320 MFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES 399 (629)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH
Confidence 22233333456888888888888875321 222 1 11122223345667888888877776554333
Q ss_pred CchhHH--HHHHHHHHhcCChHHHHHHHhcccCCChhHHHHH--------HH--HHHhcCChHHHHHHHHHHHH
Q 011249 278 RTNYVS--NALIHMHSKCGYLDLAWREFSRIKNKDVISYSSM--------IT--AFADHGKSQEALDMFLKMRN 339 (490)
Q Consensus 278 ~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l--------~~--~~~~~~~~~~a~~~~~~~~~ 339 (490)
.|...+ ..+.-.|.+.|+.+.-.++++.+..++..++..- +. .....+++.+|...+++-.+
T Consensus 400 ~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 400 IDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 343322 2355667777877777777777766543332211 11 12346777777777776665
No 466
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=48.19 E-value=2.5e+02 Score=26.78 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=12.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 385 LTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 385 ~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
-...+.++...|+..-+.-+.+.+.
T Consensus 255 r~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 255 RREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHHHHHHHHHcCCcchHHHHHHHhc
Confidence 3344555555555554444444443
No 467
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=48.05 E-value=3.9e+02 Score=28.85 Aligned_cols=98 Identities=7% Similarity=0.103 Sum_probs=62.2
Q ss_pred ehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-HhhHHHHHHHhcCCCChHHHHHHHHHhcC---CHHHHHHHHhhcCC
Q 011249 70 LWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTS-GFTFSSVLNACARVPSLLEAVICGYTKIG---LMDDAQRLFDSMAE 145 (490)
Q Consensus 70 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 145 (490)
+.-++=+++.....+++|+..|++.... -|. ...|...+++= -+++.--...| .+++|+.-|+.+..
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (932)
T PRK13184 477 SCLAVPDAFLAEKLYDQALIFYRRIRES--FPGRKEGYEAQFRLG-------ITLLEKASEQGDPRDFTQALSEFSYLHG 547 (932)
T ss_pred ecccCcHHHHhhHHHHHHHHHHHHHhhc--CCCcccchHHHHHhh-------HHHHHHHHhcCChHHHHHHHHHHHHhcC
Confidence 3445556788888999999999998775 332 33444444321 11222223333 57888999988876
Q ss_pred C-C-HhHHHHHHHHHHhCCChHHHHHHHHHhcc
Q 011249 146 R-N-VISWSAMVAGYANCGNMKAAKEFYDRMTE 176 (490)
Q Consensus 146 ~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 176 (490)
. . +--|-.-.-+|.+.|++++=++.+.-..+
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (932)
T PRK13184 548 GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALK 580 (932)
T ss_pred CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3 2 23455556668888999888888777664
No 468
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=47.05 E-value=2.5e+02 Score=26.43 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=13.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 385 LTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 385 ~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
.|.|++.|...+.++.|.++..+..
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~ 236 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSV 236 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhccc
Confidence 3445555555555555555555544
No 469
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=46.90 E-value=65 Score=22.49 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=27.3
Q ss_pred HHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCC
Q 011249 139 LFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGE 194 (490)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (490)
+++.+.+.++.+....-..-....+.+++.++++.+....+.+|....+++...|.
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 33333333333333333333344455555555555555555555555555555444
No 470
>PRK09857 putative transposase; Provisional
Probab=46.29 E-value=1e+02 Score=27.74 Aligned_cols=63 Identities=11% Similarity=-0.002 Sum_probs=45.7
Q ss_pred HHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccccc
Q 011249 419 ALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKK 481 (490)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 481 (490)
.++.-....++.++-.++++...+..|.......+++.-+.+.|..++++++.++|...|+..
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 344333456777777777777776666666677788888888888888888888888887753
No 471
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=46.24 E-value=2.2e+02 Score=25.45 Aligned_cols=16 Identities=13% Similarity=0.110 Sum_probs=8.6
Q ss_pred ChHHHHHHHHHHHHcC
Q 011249 225 YAKAAIEMYKVMRQEN 240 (490)
Q Consensus 225 ~~~~A~~~~~~~~~~~ 240 (490)
+..+|..+|++..+.|
T Consensus 128 d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 128 DLVKALKYYEKAAKLG 143 (292)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 4455555555555554
No 472
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=43.56 E-value=1e+02 Score=21.78 Aligned_cols=29 Identities=3% Similarity=0.155 Sum_probs=12.8
Q ss_pred ChhHHHHHHhhcCCCCHHhHHHHHHHHHh
Q 011249 194 EVREAKKVFDEISEPDASCWAAMTVCYVQ 222 (490)
Q Consensus 194 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 222 (490)
+.+.+.++++.++...+.+|..+..++..
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 34444444444444444444444444433
No 473
>PRK14700 recombination factor protein RarA; Provisional
Probab=43.49 E-value=2.5e+02 Score=25.33 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=37.9
Q ss_pred CHHhHHHHHHHHHh---cCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCC
Q 011249 209 DASCWAAMTVCYVQ---NGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGD 260 (490)
Q Consensus 209 ~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 260 (490)
+...+..+++++.+ -.+++.|+-++.+|.+.|-.|....-..++-+.-..|.
T Consensus 122 ~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 122 EGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred CcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 33344456777765 46789999999999999888877777777777766664
No 474
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=43.40 E-value=1.4e+02 Score=22.24 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHH
Q 011249 432 LGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIV 470 (490)
Q Consensus 432 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (490)
.+++.+.+...+.|..+..+..|+.-+....-|+++..-
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~k 100 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKK 100 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 356677777777787766555555544444444444433
No 475
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=43.36 E-value=43 Score=19.13 Aligned_cols=29 Identities=14% Similarity=-0.031 Sum_probs=21.2
Q ss_pred chHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 449 GNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
.+|..|+.+-...+++++|.+=|++..+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45777888888888888888777766543
No 476
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.78 E-value=76 Score=19.20 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=22.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 011249 322 ADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLT 354 (490)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 354 (490)
.+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777777766666554
No 477
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.58 E-value=4.3e+02 Score=27.83 Aligned_cols=55 Identities=15% Similarity=0.061 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCH--hHHHHHHHHHHhCCChHHHHHHHHHhccC
Q 011249 121 EAVICGYTKIGLMDDAQRLFDSMAERNV--ISWSAMVAGYANCGNMKAAKEFYDRMTEK 177 (490)
Q Consensus 121 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (490)
..+=..|...|++++|+++-..- |+. ..+..-...|.+.+++..|-++|.++.++
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~--p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~ 418 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTR--PDALETVLLKQADFLFQDKEYLRAAEIYAETLSS 418 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCC--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhh
Confidence 56777899999999999876544 332 23444556788888999999999888544
No 478
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=42.29 E-value=58 Score=29.13 Aligned_cols=70 Identities=10% Similarity=-0.073 Sum_probs=56.3
Q ss_pred CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHH-HHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 410 DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSAL-LANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
...|+..|...+.-..+.|.+.+...++.+++...|.|...|.. ...-+...++.+.+..+|.+-...+.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 34577788888776677889999999999999999999998876 44557778999999999987665544
No 479
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=41.83 E-value=3.2e+02 Score=26.12 Aligned_cols=231 Identities=13% Similarity=0.031 Sum_probs=118.9
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHH
Q 011249 124 ICGYTKIGLMDDAQRLFDSMAE--RNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKV 201 (490)
Q Consensus 124 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 201 (490)
++++...| +.+...+-.... ++...+.....++....+...+..+.+-+..++.......++++...++.+-...+
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L 122 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWL 122 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHH
Confidence 44455556 455555544442 34444444444443333333345555555556666777778888777776666555
Q ss_pred HhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchh
Q 011249 202 FDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNY 281 (490)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 281 (490)
...+..+++......+.++...+. .+...+....+ .++...-..-+.++...++.+... .+..+.. ..+..
T Consensus 123 ~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~-~L~~al~---d~~~~ 193 (410)
T TIGR02270 123 EPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLSES-TLRLYLR---DSDPE 193 (410)
T ss_pred HHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchH-HHHHHHc---CCCHH
Confidence 555555666555555555554432 13333333333 345555566666666666543333 2333322 35555
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhc-ccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCC
Q 011249 282 VSNALIHMHSKCGYLDLAWREFSR-IKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGG 360 (490)
Q Consensus 282 ~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 360 (490)
+-..-+.+....|. +.|...+.. ...++......+...+...| .+++...+..+.+. +. +-...+.++...|
T Consensus 194 VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~-~~~a~~~L~~ll~d---~~--vr~~a~~AlG~lg 266 (410)
T TIGR02270 194 VRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAG-GPDAQAWLRELLQA---AA--TRREALRAVGLVG 266 (410)
T ss_pred HHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCC-chhHHHHHHHHhcC---hh--hHHHHHHHHHHcC
Confidence 66666666677776 555555554 44445444444444443333 33566666555542 22 3334455555566
Q ss_pred ChHHHHHHHHHH
Q 011249 361 LVEDGCKQFELM 372 (490)
Q Consensus 361 ~~~~a~~~~~~~ 372 (490)
+...+.-+.+.+
T Consensus 267 ~p~av~~L~~~l 278 (410)
T TIGR02270 267 DVEAAPWCLEAM 278 (410)
T ss_pred CcchHHHHHHHh
Confidence 655444444433
No 480
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=41.65 E-value=3.2e+02 Score=26.11 Aligned_cols=32 Identities=25% Similarity=0.195 Sum_probs=25.7
Q ss_pred hHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC
Q 011249 416 TWGALLGACKVHVNAELGEIAARHLLELGPEK 447 (490)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 447 (490)
++..-+..+.+.+++..|-.+.+++++++|..
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 55666778889999999999999999998863
No 481
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.99 E-value=3.2e+02 Score=25.82 Aligned_cols=56 Identities=9% Similarity=-0.111 Sum_probs=33.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCcccChh--hHHHHHHHHh--ccCChHHHHHHHHHHHhc
Q 011249 218 VCYVQNGYAKAAIEMYKVMRQENVRISEV--AMVGAISACT--QLGDVEMAAILAKHVDEG 274 (490)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 274 (490)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445677788888888887765 444433 2333333333 345667777777766544
No 482
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=40.76 E-value=2.2e+02 Score=25.60 Aligned_cols=53 Identities=9% Similarity=0.110 Sum_probs=29.8
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011249 184 AMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQ 238 (490)
Q Consensus 184 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 238 (490)
.++..+.+.++..+..+.++.+. ....-...+..+...|++..|++++.+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444444444444444444442 223334456666777888888887777664
No 483
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.51 E-value=1.5e+02 Score=23.24 Aligned_cols=12 Identities=8% Similarity=0.105 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 011249 363 EDGCKQFELMTR 374 (490)
Q Consensus 363 ~~a~~~~~~~~~ 374 (490)
-.|.++++.+.+
T Consensus 37 ~sAeei~~~l~~ 48 (145)
T COG0735 37 LSAEELYEELRE 48 (145)
T ss_pred CCHHHHHHHHHH
Confidence 444444444444
No 484
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=39.77 E-value=2.7e+02 Score=26.28 Aligned_cols=91 Identities=11% Similarity=-0.085 Sum_probs=57.4
Q ss_pred HHHHhhcCChHHHHHHHHhcc----CC----CChhhHHHHHHHHhhhCChHHHHHHHHHHHhcC--C--CCCchHHHHHH
Q 011249 389 VDLLGRSGQLEKAHSLIMDYK----DF----CDAGTWGALLGACKVHVNAELGEIAARHLLELG--P--EKTGNSALLAN 456 (490)
Q Consensus 389 ~~~~~~~g~~~~A~~~~~~~~----~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p--~~~~~~~~l~~ 456 (490)
...|...|+...-...+.... .. ......|.++..|...+.++.|..+..+..--+ . +-+.....++.
T Consensus 176 ~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~Gr 255 (493)
T KOG2581|consen 176 YLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGR 255 (493)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhh
Confidence 344455565555544443322 12 223456777788888899999988887765311 1 12345566777
Q ss_pred HHHhcCCcchHHHHHHHhhhccc
Q 011249 457 IYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 457 ~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
...-+++|..|.+.+-....+.+
T Consensus 256 IkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 256 IKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHhhcchhHHHHHHHHHHHhCc
Confidence 88888999999999877765543
No 485
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=39.16 E-value=68 Score=17.56 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=16.8
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHH
Q 011249 429 NAELGEIAARHLLELGPEKTGNSALLA 455 (490)
Q Consensus 429 ~~~~a~~~~~~~~~~~p~~~~~~~~l~ 455 (490)
.++.|..+|++.+...|+ +..+...+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 467777888887777665 55454443
No 486
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=37.40 E-value=2.1e+02 Score=27.91 Aligned_cols=54 Identities=7% Similarity=0.080 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhc
Q 011249 348 TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDY 408 (490)
Q Consensus 348 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 408 (490)
.|-.++.-|...+++++|.++.+...+ ...|..+...-.+..+..-++..|..+
T Consensus 575 py~~iL~e~~sssKWeqavRLCrfv~e-------qTMWAtlAa~Av~~~~m~~~EiAYaA~ 628 (737)
T KOG1524|consen 575 PYPEILHEYLSSSKWEQAVRLCRFVQE-------QTMWATLAAVAVRKHQMQISEIAYAAA 628 (737)
T ss_pred ccHHHHHHHhccchHHHHHHHHHhccc-------hHHHHHHHHHHHhhccccHHHHHHHHh
Confidence 344445555555666666655554432 234455554444555544444444333
No 487
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=37.32 E-value=2.9e+02 Score=24.37 Aligned_cols=131 Identities=11% Similarity=-0.011 Sum_probs=75.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCCh
Q 011249 321 FADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSH--GGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQL 398 (490)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 398 (490)
+.+......|+++-++.+. +.|-..|.-..-..+.+ ..+..+-++.++++.. ..+.+-.+|..--......|++
T Consensus 53 ~~~~E~S~RAl~LT~d~i~--lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e--~npKNYQvWHHRr~ive~l~d~ 128 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIR--LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIE--DNPKNYQVWHHRRVIVELLGDP 128 (318)
T ss_pred HhccccCHHHHHHHHHHHH--hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHH--hCccchhHHHHHHHHHHHhcCc
Confidence 4556677788888888777 35544432222211111 2245566677777776 4455555554322233334455
Q ss_pred H-HHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 011249 399 E-KAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLA 455 (490)
Q Consensus 399 ~-~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 455 (490)
. .-+++.+.|. ...+-..|..=-.++...++++.-+.+..++++.+-.|-++|+.--
T Consensus 129 s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ry 188 (318)
T KOG0530|consen 129 SFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRY 188 (318)
T ss_pred ccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheee
Confidence 4 4455555555 3345556666666777777788888888888877755555565543
No 488
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=36.88 E-value=1.7e+02 Score=32.00 Aligned_cols=120 Identities=12% Similarity=-0.034 Sum_probs=74.6
Q ss_pred hcCCCChHHHHH------HHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc---------CCC-ChhhHHH
Q 011249 356 CSHGGLVEDGCK------QFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK---------DFC-DAGTWGA 419 (490)
Q Consensus 356 ~~~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~~~~ 419 (490)
....|.+.++.+ ++...... -.++....|..+...+.+.|+.++|+..-.+.. ..| +...|..
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~-~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGV-LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhh-cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 334455555555 45433321 234556777788888888888888888765443 222 3345555
Q ss_pred HHHHHhhhCChHHHHHHHHHHHhc-----C---CCCCchHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 420 LLGACKVHVNAELGEIAARHLLEL-----G---PEKTGNSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~-----~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
+.-.+...++...|...+.++... + |.-......+..++...++++.|.++.+.+.+
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 555556666777788777777652 2 33344555666666666888888888887765
No 489
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=36.84 E-value=5e+02 Score=28.16 Aligned_cols=113 Identities=13% Similarity=0.136 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHhccC--ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCC-ChhHHHHHHHHH
Q 011249 245 EVAMVGAISACTQLG--DVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNK-DVISYSSMITAF 321 (490)
Q Consensus 245 ~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~ 321 (490)
..-+..++.+|.+.+ ++++|+.....+.+.+ .......+.-.+- +-++.++|+....- |. =.+++-+-
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~----~~~ae~alkyl~f---LvDvn~Ly~~ALG~YDl--~Lal~VAq 882 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREED----PESAEEALKYLCF---LVDVNKLYDVALGTYDL--ELALMVAQ 882 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcC----hHHHHHHHhHhee---eccHHHHHHHHhhhcCH--HHHHHHHH
Confidence 345566777787777 7888888888777652 1100000100000 01111122211110 00 01122233
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 011249 322 ADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELM 372 (490)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 372 (490)
..+.|+.+=+-.++++.+ ++|+..-|. |+ ...+++++|+..+.++
T Consensus 883 ~SQkDPKEYLPfL~~L~~--l~~~~rry~--ID--~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 883 QSQKDPKEYLPFLQELQK--LPPLYRRYK--ID--DHLKRYEKALRHLSAC 927 (928)
T ss_pred HhccChHHHHHHHHHHHh--CChhheeee--Hh--hhhCCHHHHHHHHHhh
Confidence 445677777777777766 344332221 22 2367888888877654
No 490
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=36.82 E-value=2.8e+02 Score=24.01 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=76.4
Q ss_pred HHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHH
Q 011249 185 MIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMA 264 (490)
Q Consensus 185 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 264 (490)
.+..|...-++.-|-..++++.+|-..-+ + +--|.+..+..---++.+-....++.-+......++ +...||..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPIQSRC-A-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPIQSRC-A-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhHHhhh-H-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 34555555555555555555554322111 1 112333333222233333334445554444444443 3445665555
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011249 265 AILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP 344 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 344 (490)
...++.-... -..-.+..+|+-..+|.+.....++..+. .+++++|.+.+.++.+.|+.|
T Consensus 212 lNnLQst~~g-------------------~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 212 LNNLQSTVNG-------------------FGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HHHHHHHhcc-------------------ccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 5444332111 01112344555566688877777777655 578999999999999999888
Q ss_pred cHHHHHHHHHHh
Q 011249 345 NQVTFIGVLTAC 356 (490)
Q Consensus 345 ~~~~~~~l~~~~ 356 (490)
... .+.+.+.+
T Consensus 272 ~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 272 EDI-ITTLFRVV 282 (333)
T ss_pred HHH-HHHHHHHH
Confidence 554 23344443
No 491
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.70 E-value=1.9e+02 Score=27.19 Aligned_cols=111 Identities=12% Similarity=0.089 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHH-cCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHH
Q 011249 348 TFIGVLTACSHGGLVEDGCKQFELMTRV-FGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGAC 424 (490)
Q Consensus 348 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 424 (490)
+...|++...-.|+.....++++.+.+. +|..|...+-..+.-+|.-.|++.+|.+.|-.+. .......+......+
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~ 316 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQY 316 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhH
Confidence 4555667777777777777777766552 2334443333456777888888888888886654 111111111111011
Q ss_pred -hhhCChHHHHHHHHHHHhcCCC--CCchHHHHHHHH
Q 011249 425 -KVHVNAELGEIAARHLLELGPE--KTGNSALLANIY 458 (490)
Q Consensus 425 -~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~ 458 (490)
...+..|....++..++.+.|. |.++...+...|
T Consensus 317 d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~ 353 (525)
T KOG3677|consen 317 DMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKY 353 (525)
T ss_pred hhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHh
Confidence 1234556666666666666664 334555555544
No 492
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=36.69 E-value=1.2e+02 Score=19.67 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=38.4
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHH
Q 011249 77 NHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLF 140 (490)
Q Consensus 77 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (490)
.+...|++-+|-++++.+=.....|....+..+|..+ ..-...+.|+...|.+++
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A---------~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLA---------VALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHH---------HHHHHHHCTSHHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHH---------HHHHHHHhCCHHHHHHhC
Confidence 3557899999999999986543345666777777753 444567888888887764
No 493
>PF08195 TRI9: TRI9 protein; InterPro: IPR013265 This entry contains putative genes, of 129 bp, from the Trichothecene gene cluster of Fusarium sporotrichioides and Gibberella zeae (Fusarium graminearum) that encode a predicted protein of 43 amino acids whose function is unknown [, ].
Probab=36.66 E-value=13 Score=20.61 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=10.7
Q ss_pred ccccCCCccccCC
Q 011249 478 EKKKSPGCSWISS 490 (490)
Q Consensus 478 ~~~~~~~~~~~~~ 490 (490)
+.+.+|..||+++
T Consensus 10 ~~~~dp~vswle~ 22 (43)
T PF08195_consen 10 SYDMDPDVSWLEV 22 (43)
T ss_pred cccCCCCccHHHh
Confidence 6778899999875
No 494
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=36.25 E-value=3.7e+02 Score=25.60 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=55.4
Q ss_pred HHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHH--------HHhcCChHHHHHHHhcccC
Q 011249 237 RQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHM--------HSKCGYLDLAWREFSRIKN 308 (490)
Q Consensus 237 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~ 308 (490)
....+.||..+.+.+...++..-..+-...+++...+.+ .|-...+.+++-. -.+...-++++++++.|..
T Consensus 175 dtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~ 253 (669)
T KOG3636|consen 175 DTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPA 253 (669)
T ss_pred hccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCch
Confidence 345678888888888777777777777788888777776 3444334333321 1244556788888888875
Q ss_pred ----CChhHHHHHHHHHH
Q 011249 309 ----KDVISYSSMITAFA 322 (490)
Q Consensus 309 ----~~~~~~~~l~~~~~ 322 (490)
.|+.-+-.|...|+
T Consensus 254 ~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 254 QLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred hcccccchhHHHHHHHHh
Confidence 35566666666555
No 495
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=35.59 E-value=4.1e+02 Score=25.52 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=61.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhccC---CchhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhc
Q 011249 151 WSAMVAGYANCGNMKAAKEFYDRMTEK---NSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQN 223 (490)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 223 (490)
...|+.-|...|+..+|-+..+++--| ....+.+++.+.-+.|+-...+.+++..-.....|-+.+-++|-+.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV 587 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERV 587 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhh
Confidence 446788899999999999999999887 5668889999999999988888888887777777888888887664
No 496
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.77 E-value=1.6e+02 Score=23.86 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcC
Q 011249 362 VEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSG 396 (490)
Q Consensus 362 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 396 (490)
.-.|.++++.+.+. +...+..|...-+..+.+.|
T Consensus 41 hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 41 AISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCC
Confidence 33444455544443 33333333333334444444
No 497
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=34.76 E-value=2.1e+02 Score=21.88 Aligned_cols=56 Identities=18% Similarity=-0.038 Sum_probs=27.1
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHhccCCCChh-hHHHHHHHHhhhCChHHHHHHH
Q 011249 382 TEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAG-TWGALLGACKVHVNAELGEIAA 437 (490)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~ 437 (490)
..+..+++-++.-.|..++|.+++....-.++-. .-..++..|....+.++..++=
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q 122 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQ 122 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3344455555555666666666665555222221 2233445555555544444433
No 498
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.09 E-value=2.2e+02 Score=28.71 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=43.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHhccC------CchhHHHHHHHHHhcCChh------HHHHHHhhcCC-CCHHhHHHHHHH
Q 011249 153 AMVAGYANCGNMKAAKEFYDRMTEK------NSVTWVAMIAGYGKCGEVR------EAKKVFDEISE-PDASCWAAMTVC 219 (490)
Q Consensus 153 ~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~------~A~~~~~~~~~-~~~~~~~~l~~~ 219 (490)
.|+.+|..+|++..+.++++..... -...+|..++...+.|.++ .|.+.++...- -|..+|..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 6788888888888888888877643 2345666677777777653 23333333321 455666666655
Q ss_pred HHh
Q 011249 220 YVQ 222 (490)
Q Consensus 220 ~~~ 222 (490)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 444
No 499
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.88 E-value=4.9e+02 Score=25.96 Aligned_cols=137 Identities=6% Similarity=-0.000 Sum_probs=78.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC-------CC
Q 011249 75 IRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE-------RN 147 (490)
Q Consensus 75 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~ 147 (490)
++.+.+.|.+..|+++-+-+.+....-|+.....+|..+ ..+..++.--+++++.... ||
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~-------------ALrareYqwiI~~~~~~e~~n~l~~~PN 415 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY-------------ALRAREYQWIIELSNEPENMNKLSQLPN 415 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH-------------HHHHHhHHHHHHHHHHHHhhccHhhcCC
Confidence 345677899999999998888875555666766777765 4566777777777666532 44
Q ss_pred HhHHHHHHHHHHhCCC---hHHHHHHHHHhccCCchhHHHHHHHHHhcCC-hhHHHHHHhhc-CCCCHHhHHHHHHHHHh
Q 011249 148 VISWSAMVAGYANCGN---MKAAKEFYDRMTEKNSVTWVAMIAGYGKCGE-VREAKKVFDEI-SEPDASCWAAMTVCYVQ 222 (490)
Q Consensus 148 ~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~-~~~~~~~~~~l~~~~~~ 222 (490)
-.--.++...|..... -+.|...+.++.+.-+...+-|++.+.-..+ +-.-.+++..- ..+-..++..++..|+.
T Consensus 416 ~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~vl~eLld~~~l~~da~~~~~k~~~~~a~~~e~pal~~lv~lY~~ 495 (665)
T KOG2422|consen 416 FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPLVLSELLDELLLGDDALTKDLKFDGSSAENSELPALMLLVKLYAN 495 (665)
T ss_pred chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHHHHHHHHhccCCchhhhhhhcccccccccccchHHHHHHHHHHh
Confidence 3333345555555554 4556666666666555555555554432211 11111111111 11344566677777766
Q ss_pred cC
Q 011249 223 NG 224 (490)
Q Consensus 223 ~g 224 (490)
..
T Consensus 496 r~ 497 (665)
T KOG2422|consen 496 RN 497 (665)
T ss_pred hh
Confidence 54
No 500
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=33.74 E-value=5.4e+02 Score=27.11 Aligned_cols=46 Identities=11% Similarity=0.072 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 011249 327 SQEALDMFLKMR-NEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTR 374 (490)
Q Consensus 327 ~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 374 (490)
.++..+.+++.. ..|+..+......+.... .|++..|+.++++...
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia 226 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHH
Confidence 455666666654 357777777776666543 7899999999887665
Done!