Query 011249
Match_columns 490
No_of_seqs 575 out of 2773
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 04:14:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1E-40 3.4E-45 332.7 39.1 424 31-479 82-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.6E-39 2.3E-43 319.6 34.6 429 8-460 95-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-30 4.7E-35 245.1 38.9 369 74-463 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-29 5.6E-34 237.7 37.1 349 124-478 6-369 (388)
5 4g26_A Pentatricopeptide repea 100.0 4.7E-28 1.6E-32 231.6 23.1 183 211-394 27-222 (501)
6 2gw1_A Mitochondrial precursor 100.0 8.7E-26 3E-30 220.5 33.9 265 210-479 186-480 (514)
7 4g26_A Pentatricopeptide repea 100.0 5.7E-27 2E-31 224.1 21.2 200 227-427 7-223 (501)
8 3fp2_A TPR repeat-containing p 99.9 3.4E-25 1.1E-29 217.6 31.9 420 37-479 27-493 (537)
9 2y4t_A DNAJ homolog subfamily 99.9 8E-25 2.7E-29 210.0 32.3 327 147-480 25-413 (450)
10 2gw1_A Mitochondrial precursor 99.9 6.1E-25 2.1E-29 214.5 30.0 397 37-455 8-490 (514)
11 2y4t_A DNAJ homolog subfamily 99.9 5.7E-24 1.9E-28 204.1 30.7 339 123-467 32-444 (450)
12 3fp2_A TPR repeat-containing p 99.9 2.1E-23 7.3E-28 204.8 30.8 421 4-453 32-501 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 7.2E-22 2.4E-26 183.2 31.8 310 147-461 2-353 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1.2E-21 4.2E-26 181.6 30.6 297 178-479 2-337 (359)
15 3hym_B Cell division cycle pro 99.9 1.4E-20 4.9E-25 172.3 30.1 285 178-465 21-322 (330)
16 1fch_A Peroxisomal targeting s 99.9 2.7E-21 9.3E-26 180.1 23.6 259 212-475 66-357 (368)
17 2xm6_A Protein corresponding t 99.9 1.1E-19 3.8E-24 175.9 35.6 375 56-460 27-452 (490)
18 3hym_B Cell division cycle pro 99.9 3.2E-20 1.1E-24 170.0 29.0 267 208-479 20-301 (330)
19 2xm6_A Protein corresponding t 99.9 2E-18 6.9E-23 167.0 38.0 335 130-479 56-434 (490)
20 2ooe_A Cleavage stimulation fa 99.9 5.5E-18 1.9E-22 165.6 38.9 409 29-479 9-494 (530)
21 4eqf_A PEX5-related protein; a 99.9 2.8E-20 9.6E-25 173.1 21.0 261 209-473 64-352 (365)
22 1b89_A Protein (clathrin heavy 99.9 2.1E-19 7.1E-24 164.0 25.9 379 4-438 10-412 (449)
23 4g1t_A Interferon-induced prot 99.9 4.2E-19 1.4E-23 171.3 29.8 335 148-488 51-470 (472)
24 2ooe_A Cleavage stimulation fa 99.9 4.1E-18 1.4E-22 166.6 36.2 396 9-446 24-495 (530)
25 1xi4_A Clathrin heavy chain; a 99.8 3.8E-17 1.3E-21 165.9 40.7 369 69-471 986-1378(1630)
26 3mkr_A Coatomer subunit epsilo 99.8 3.4E-18 1.2E-22 152.8 29.6 269 187-469 7-286 (291)
27 1b89_A Protein (clathrin heavy 99.8 1.1E-20 3.6E-25 172.5 13.1 304 127-459 13-339 (449)
28 1fch_A Peroxisomal targeting s 99.8 1.8E-19 6.2E-24 167.8 21.6 277 160-442 37-358 (368)
29 3cv0_A Peroxisome targeting si 99.8 2.1E-19 7.2E-24 164.3 20.9 261 212-477 23-315 (327)
30 1xi4_A Clathrin heavy chain; a 99.8 3.9E-16 1.3E-20 158.7 42.8 430 6-472 845-1340(1630)
31 4g1t_A Interferon-induced prot 99.8 1.8E-17 6.1E-22 159.8 31.9 362 66-455 49-471 (472)
32 3mkr_A Coatomer subunit epsilo 99.8 1.5E-18 5.3E-23 155.0 22.2 250 217-479 6-266 (291)
33 4eqf_A PEX5-related protein; a 99.8 1.2E-18 4.2E-23 162.0 22.1 234 244-480 64-313 (365)
34 3cv0_A Peroxisome targeting si 99.8 2.4E-18 8.1E-23 157.3 18.4 270 149-444 22-316 (327)
35 3e4b_A ALGK; tetratricopeptide 99.8 6.6E-17 2.3E-21 154.0 23.0 376 73-477 8-421 (452)
36 3uq3_A Heat shock protein STI1 99.8 6.7E-17 2.3E-21 142.1 20.5 228 211-478 6-237 (258)
37 3uq3_A Heat shock protein STI1 99.8 7.4E-17 2.5E-21 141.9 20.3 234 179-456 5-255 (258)
38 2pl2_A Hypothetical conserved 99.8 5.4E-17 1.9E-21 138.6 18.5 194 277-475 2-212 (217)
39 3u4t_A TPR repeat-containing p 99.7 3.5E-16 1.2E-20 138.9 21.1 246 212-462 5-269 (272)
40 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.9E-16 1E-20 139.5 20.4 241 222-471 17-269 (275)
41 3e4b_A ALGK; tetratricopeptide 99.7 3.2E-16 1.1E-20 149.3 19.3 342 123-479 9-389 (452)
42 1ouv_A Conserved hypothetical 99.7 1E-14 3.4E-19 129.5 26.1 224 209-445 5-253 (273)
43 2h6f_A Protein farnesyltransfe 99.7 3.4E-15 1.2E-19 137.8 22.7 247 209-461 96-366 (382)
44 2q7f_A YRRB protein; TPR, prot 99.7 7.9E-16 2.7E-20 134.0 17.0 209 246-458 24-237 (243)
45 1ouv_A Conserved hypothetical 99.7 2.8E-14 9.5E-19 126.6 26.0 224 244-479 5-253 (273)
46 3u4t_A TPR repeat-containing p 99.7 4.3E-15 1.5E-19 131.8 20.5 232 245-480 3-253 (272)
47 2ho1_A Type 4 fimbrial biogene 99.7 1E-14 3.4E-19 127.8 22.4 195 253-450 45-245 (252)
48 2pl2_A Hypothetical conserved 99.7 3.9E-15 1.3E-19 127.0 18.8 204 210-440 5-211 (217)
49 2q7f_A YRRB protein; TPR, prot 99.7 2.3E-15 8E-20 131.0 17.6 199 278-479 21-224 (243)
50 2vq2_A PILW, putative fimbrial 99.7 1.9E-14 6.7E-19 123.4 22.7 201 249-452 12-220 (225)
51 2h6f_A Protein farnesyltransfe 99.7 5E-15 1.7E-19 136.7 20.1 229 245-479 97-350 (382)
52 4a1s_A PINS, partner of inscut 99.7 1.5E-15 5.3E-20 143.4 16.6 260 216-476 54-371 (411)
53 2vq2_A PILW, putative fimbrial 99.7 1.6E-14 5.3E-19 124.0 20.8 201 277-479 5-213 (225)
54 2ho1_A Type 4 fimbrial biogene 99.7 1.2E-14 4E-19 127.3 20.4 198 280-479 37-240 (252)
55 3sf4_A G-protein-signaling mod 99.6 3.5E-15 1.2E-19 140.6 17.5 295 178-472 8-371 (406)
56 3ro2_A PINS homolog, G-protein 99.6 5.9E-15 2E-19 135.0 17.5 265 213-478 8-333 (338)
57 3spa_A Mtrpol, DNA-directed RN 99.6 1.9E-16 6.5E-21 156.2 7.7 124 179-302 127-258 (1134)
58 3sf4_A G-protein-signaling mod 99.6 2.9E-15 1E-19 141.1 15.5 286 146-431 7-364 (406)
59 3vtx_A MAMA; tetratricopeptide 99.6 1.9E-14 6.4E-19 119.4 18.5 166 310-479 4-172 (184)
60 4abn_A Tetratricopeptide repea 99.6 5.4E-15 1.9E-19 141.7 17.3 210 261-475 84-319 (474)
61 3spa_A Mtrpol, DNA-directed RN 99.6 2.6E-16 9E-21 155.2 7.8 118 278-396 125-250 (1134)
62 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.5E-15 2.9E-19 130.0 16.1 236 193-437 19-269 (275)
63 3ulq_A Response regulator aspa 99.6 1.7E-14 5.9E-19 134.8 16.9 164 313-477 186-368 (383)
64 4a1s_A PINS, partner of inscut 99.6 2.1E-14 7.2E-19 135.6 17.6 270 149-446 49-375 (411)
65 4e6h_A MRNA 3'-END-processing 99.6 9.4E-12 3.2E-16 122.6 35.5 411 14-449 50-576 (679)
66 3ro2_A PINS homolog, G-protein 99.6 4.6E-14 1.6E-18 129.0 16.4 265 151-446 8-335 (338)
67 2ond_A Cleavage stimulation fa 99.6 2.9E-12 1E-16 115.6 26.4 220 227-450 33-277 (308)
68 3vtx_A MAMA; tetratricopeptide 99.6 1.8E-13 6.1E-18 113.5 16.9 167 279-448 4-175 (184)
69 3ulq_A Response regulator aspa 99.6 3.9E-13 1.3E-17 125.6 21.1 229 216-444 109-369 (383)
70 2ond_A Cleavage stimulation fa 99.5 1.3E-12 4.3E-17 118.0 22.7 214 262-480 33-273 (308)
71 3nf1_A KLC 1, kinesin light ch 99.5 3.3E-14 1.1E-18 128.6 10.8 237 210-477 27-307 (311)
72 4gyw_A UDP-N-acetylglucosamine 99.5 2.4E-13 8.1E-18 135.5 17.8 164 310-477 8-174 (723)
73 3as5_A MAMA; tetratricopeptide 99.5 3.8E-13 1.3E-17 111.4 15.7 166 314-482 11-178 (186)
74 4e6h_A MRNA 3'-END-processing 99.5 1.3E-10 4.5E-15 114.4 35.9 400 64-480 62-573 (679)
75 3nf1_A KLC 1, kinesin light ch 99.5 9.9E-14 3.4E-18 125.4 12.4 238 178-446 26-310 (311)
76 1hz4_A MALT regulatory protein 99.5 2.4E-11 8.3E-16 112.9 26.5 262 184-446 19-325 (373)
77 4i17_A Hypothetical protein; T 99.5 1.5E-12 5E-17 112.1 16.8 190 279-479 6-211 (228)
78 3q15_A PSP28, response regulat 99.5 7.6E-12 2.6E-16 116.5 22.8 228 215-442 106-364 (378)
79 3q15_A PSP28, response regulat 99.5 1.1E-12 3.8E-17 122.2 16.3 228 249-477 105-365 (378)
80 4abn_A Tetratricopeptide repea 99.5 2E-12 6.7E-17 124.0 18.1 190 209-405 101-315 (474)
81 4i17_A Hypothetical protein; T 99.5 5.9E-12 2E-16 108.2 18.8 206 243-459 5-225 (228)
82 3as5_A MAMA; tetratricopeptide 99.4 7.5E-12 2.6E-16 103.4 17.8 169 280-451 8-181 (186)
83 1qqe_A Vesicular transport pro 99.4 1.5E-11 5.3E-16 109.9 17.0 164 312-475 78-267 (292)
84 1hz4_A MALT regulatory protein 99.4 5.5E-11 1.9E-15 110.5 20.7 291 151-446 17-352 (373)
85 3edt_B KLC 2, kinesin light ch 99.3 8.5E-12 2.9E-16 110.8 13.1 164 313-476 87-280 (283)
86 1qqe_A Vesicular transport pro 99.3 1E-10 3.5E-15 104.5 18.8 172 282-455 79-281 (292)
87 4gyw_A UDP-N-acetylglucosamine 99.3 1.3E-11 4.5E-16 123.0 14.1 162 279-444 8-175 (723)
88 3mv2_B Coatomer subunit epsilo 99.3 4.4E-10 1.5E-14 98.4 21.8 243 187-451 21-290 (310)
89 3mv2_B Coatomer subunit epsilo 99.3 2.5E-10 8.5E-15 100.0 19.9 237 219-477 22-282 (310)
90 3qky_A Outer membrane assembly 99.3 1.2E-10 4.2E-15 102.2 17.0 82 386-467 152-251 (261)
91 2yhc_A BAMD, UPF0169 lipoprote 99.3 3E-10 1E-14 97.2 18.6 182 282-482 6-218 (225)
92 4ga2_A E3 SUMO-protein ligase 99.3 9.2E-12 3.1E-16 99.0 8.2 142 318-463 4-149 (150)
93 3qky_A Outer membrane assembly 99.3 1.5E-10 5.3E-15 101.6 16.9 185 278-479 13-226 (261)
94 3edt_B KLC 2, kinesin light ch 99.3 1.7E-10 5.9E-15 102.3 17.0 162 282-443 87-281 (283)
95 2fo7_A Synthetic consensus TPR 99.2 1.2E-10 4.2E-15 90.3 13.4 126 351-478 6-133 (136)
96 2pzi_A Probable serine/threoni 99.2 6E-11 2.1E-15 118.8 13.6 168 291-463 402-583 (681)
97 4ga2_A E3 SUMO-protein ligase 99.2 2.8E-11 9.7E-16 96.2 8.2 126 352-479 3-131 (150)
98 3qou_A Protein YBBN; thioredox 99.2 4.9E-10 1.7E-14 99.7 16.0 175 297-476 103-283 (287)
99 3rjv_A Putative SEL1 repeat pr 99.2 1.7E-09 6E-14 91.4 18.5 172 299-479 5-199 (212)
100 2fo7_A Synthetic consensus TPR 99.2 1.1E-09 3.9E-14 84.7 15.4 131 313-446 3-135 (136)
101 2ifu_A Gamma-SNAP; membrane fu 99.1 1.2E-09 4.1E-14 98.3 15.9 219 223-469 4-253 (307)
102 4gco_A Protein STI-1; structur 99.1 5.5E-10 1.9E-14 85.5 11.6 114 342-457 8-124 (126)
103 2vsy_A XCC0866; transferase, g 99.1 5.9E-10 2E-14 109.7 14.6 159 293-455 2-169 (568)
104 3gyz_A Chaperone protein IPGC; 99.1 2.2E-10 7.5E-15 90.5 9.3 98 382-479 36-135 (151)
105 2r5s_A Uncharacterized protein 99.1 5.5E-10 1.9E-14 91.5 11.8 155 317-476 12-172 (176)
106 2pzi_A Probable serine/threoni 99.1 3.3E-09 1.1E-13 106.2 19.5 168 256-429 402-583 (681)
107 3urz_A Uncharacterized protein 99.1 1.1E-09 3.8E-14 92.3 13.0 160 282-446 6-189 (208)
108 3urz_A Uncharacterized protein 99.1 1.7E-09 5.9E-14 91.1 13.7 123 352-477 60-186 (208)
109 2vsy_A XCC0866; transferase, g 99.1 2.6E-09 8.9E-14 105.1 16.4 148 258-409 2-155 (568)
110 2ifu_A Gamma-SNAP; membrane fu 99.1 1.7E-09 5.8E-14 97.3 13.5 197 257-475 3-222 (307)
111 3dra_A Protein farnesyltransfe 99.1 2.4E-07 8.2E-12 82.0 26.5 231 221-456 43-301 (306)
112 2yhc_A BAMD, UPF0169 lipoprote 99.0 8.4E-09 2.9E-13 88.1 16.7 186 244-450 3-220 (225)
113 4gco_A Protein STI-1; structur 99.0 1.6E-09 5.3E-14 83.0 10.8 102 378-479 8-112 (126)
114 2vgx_A Chaperone SYCD; alterna 99.0 4.8E-10 1.6E-14 88.7 7.5 101 348-450 23-125 (148)
115 1hh8_A P67PHOX, NCF-2, neutrop 99.0 4.8E-09 1.6E-13 88.7 14.2 132 311-448 6-155 (213)
116 3dra_A Protein farnesyltransfe 99.0 7.5E-08 2.6E-12 85.2 21.9 215 258-476 46-286 (306)
117 2qfc_A PLCR protein; TPR, HTH, 99.0 2.3E-08 7.9E-13 89.2 18.9 165 312-476 76-265 (293)
118 3u3w_A Transcriptional activat 99.0 2.3E-08 7.8E-13 89.3 18.8 162 316-477 80-266 (293)
119 2r5s_A Uncharacterized protein 99.0 8.9E-09 3.1E-13 84.1 14.8 151 185-338 12-171 (176)
120 3qou_A Protein YBBN; thioredox 99.0 2.4E-08 8.4E-13 88.7 18.3 161 244-407 116-280 (287)
121 2uy1_A Cleavage stimulation fa 99.0 9.9E-08 3.4E-12 91.3 23.1 77 361-441 335-411 (493)
122 1a17_A Serine/threonine protei 99.0 7.8E-09 2.7E-13 83.4 12.9 127 348-476 15-145 (166)
123 2c2l_A CHIP, carboxy terminus 99.0 1.7E-09 5.9E-14 95.8 9.6 189 282-477 6-199 (281)
124 3rjv_A Putative SEL1 repeat pr 99.0 1.7E-08 6E-13 85.2 15.4 158 208-374 16-196 (212)
125 2e2e_A Formate-dependent nitri 99.0 2.3E-09 8E-14 87.8 9.6 128 321-451 20-152 (177)
126 2vyi_A SGTA protein; chaperone 99.0 1.1E-08 3.6E-13 78.7 12.9 118 346-465 12-131 (131)
127 2lni_A Stress-induced-phosphop 99.0 1.1E-08 3.6E-13 79.1 12.8 117 345-463 15-133 (133)
128 1na0_A Designed protein CTPR3; 98.9 1.4E-08 4.8E-13 77.3 12.7 115 346-462 9-125 (125)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.9 3.9E-08 1.3E-12 83.0 16.2 147 282-442 8-171 (213)
130 2xcb_A PCRH, regulatory protei 98.9 2.7E-09 9.3E-14 83.8 8.0 99 350-450 22-122 (142)
131 2kck_A TPR repeat; tetratricop 98.9 1.2E-08 4.2E-13 75.9 11.3 100 381-480 5-109 (112)
132 2vgx_A Chaperone SYCD; alterna 98.9 5.1E-09 1.7E-13 82.7 9.4 99 381-479 20-120 (148)
133 2fbn_A 70 kDa peptidylprolyl i 98.9 1.5E-09 5.2E-14 90.7 6.4 96 383-478 89-187 (198)
134 1p5q_A FKBP52, FK506-binding p 98.9 1E-08 3.5E-13 93.3 11.9 94 382-475 196-292 (336)
135 2uy1_A Cleavage stimulation fa 98.9 3.1E-06 1.1E-10 80.9 28.9 123 347-476 287-412 (493)
136 3upv_A Heat shock protein STI1 98.9 1E-08 3.4E-13 78.6 9.5 93 385-477 7-101 (126)
137 1hxi_A PEX5, peroxisome target 98.9 7.9E-09 2.7E-13 78.4 8.8 97 383-479 18-116 (121)
138 3gyz_A Chaperone protein IPGC; 98.9 1.7E-08 5.7E-13 79.7 10.7 104 343-448 32-138 (151)
139 3u3w_A Transcriptional activat 98.9 3E-07 1E-11 82.0 19.8 203 232-443 33-266 (293)
140 4f3v_A ESX-1 secretion system 98.8 1.1E-07 3.9E-12 82.1 15.3 136 315-455 106-248 (282)
141 3sz7_A HSC70 cochaperone (SGT) 98.8 2E-08 6.8E-13 81.0 10.0 110 345-456 10-121 (164)
142 3q49_B STIP1 homology and U bo 98.8 3.1E-08 1.1E-12 77.0 10.7 96 382-477 9-106 (137)
143 2qfc_A PLCR protein; TPR, HTH, 98.8 2.1E-07 7.3E-12 82.9 17.1 161 283-443 78-266 (293)
144 1elw_A TPR1-domain of HOP; HOP 98.8 8.7E-08 3E-12 71.9 12.4 109 347-457 5-115 (118)
145 4gcn_A Protein STI-1; structur 98.8 2.4E-08 8.1E-13 76.5 9.1 91 386-476 12-111 (127)
146 3upv_A Heat shock protein STI1 98.8 5.9E-08 2E-12 74.2 11.0 111 347-459 5-123 (126)
147 2e2e_A Formate-dependent nitri 98.8 6.8E-08 2.3E-12 78.9 11.8 123 356-480 20-147 (177)
148 2xcb_A PCRH, regulatory protei 98.8 5E-08 1.7E-12 76.4 10.4 98 382-479 18-117 (142)
149 1elw_A TPR1-domain of HOP; HOP 98.8 6.8E-08 2.3E-12 72.5 10.5 98 382-479 4-103 (118)
150 4f3v_A ESX-1 secretion system 98.8 3.6E-08 1.2E-12 85.2 9.9 129 349-480 105-240 (282)
151 2lni_A Stress-induced-phosphop 98.7 5.8E-08 2E-12 74.8 10.2 100 380-479 14-115 (133)
152 3sz7_A HSC70 cochaperone (SGT) 98.7 1E-07 3.6E-12 76.7 12.1 95 311-409 11-106 (164)
153 3q7a_A Farnesyltransferase alp 98.7 1.1E-05 3.6E-10 72.3 25.2 176 218-398 62-258 (349)
154 1na0_A Designed protein CTPR3; 98.7 1.2E-07 4.1E-12 72.0 10.8 98 382-479 9-108 (125)
155 2c2l_A CHIP, carboxy terminus 98.7 1.7E-07 5.9E-12 82.8 12.8 188 246-443 5-199 (281)
156 3gw4_A Uncharacterized protein 98.7 2.1E-07 7.2E-12 77.7 12.7 115 191-305 4-132 (203)
157 1a17_A Serine/threonine protei 98.7 5.4E-07 1.8E-11 72.4 14.7 128 312-442 14-145 (166)
158 3gw4_A Uncharacterized protein 98.7 2.2E-07 7.7E-12 77.5 12.6 133 311-443 26-176 (203)
159 2dba_A Smooth muscle cell asso 98.7 3.9E-07 1.3E-11 71.6 13.1 111 346-459 28-144 (148)
160 2vyi_A SGTA protein; chaperone 98.7 1E-07 3.5E-12 73.0 9.3 99 381-479 11-111 (131)
161 3q49_B STIP1 homology and U bo 98.7 1.5E-07 5.2E-12 73.0 10.0 112 345-458 8-126 (137)
162 2dba_A Smooth muscle cell asso 98.7 2.3E-07 7.7E-12 73.0 11.1 100 380-479 26-130 (148)
163 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 2.8E-07 9.4E-12 87.6 13.4 94 382-475 317-413 (457)
164 2xev_A YBGF; tetratricopeptide 98.6 2.1E-07 7.2E-12 71.3 10.3 101 352-454 8-116 (129)
165 1wao_1 Serine/threonine protei 98.6 1.3E-07 4.5E-12 90.3 10.8 119 352-472 12-134 (477)
166 3q7a_A Farnesyltransferase alp 98.6 3.3E-06 1.1E-10 75.5 18.7 216 256-476 65-330 (349)
167 2if4_A ATFKBP42; FKBP-like, al 98.6 1.6E-07 5.6E-12 85.4 10.5 152 311-482 179-333 (338)
168 3dss_A Geranylgeranyl transfer 98.6 8.5E-06 2.9E-10 72.5 20.4 116 222-339 41-173 (331)
169 3k9i_A BH0479 protein; putativ 98.6 4.7E-08 1.6E-12 73.6 4.9 92 359-451 3-98 (117)
170 2hr2_A Hypothetical protein; a 98.6 2.9E-07 1E-11 71.7 9.1 63 416-478 59-132 (159)
171 1hxi_A PEX5, peroxisome target 98.6 3.5E-07 1.2E-11 69.2 9.5 98 349-448 20-119 (121)
172 1elr_A TPR2A-domain of HOP; HO 98.6 3.4E-07 1.2E-11 70.1 9.5 111 348-461 6-125 (131)
173 4b4t_Q 26S proteasome regulato 98.6 7.3E-07 2.5E-11 84.3 13.6 163 314-476 58-244 (434)
174 2kck_A TPR repeat; tetratricop 98.5 5.1E-07 1.7E-11 66.9 9.9 99 348-448 8-111 (112)
175 2xev_A YBGF; tetratricopeptide 98.5 1.4E-06 4.9E-11 66.5 12.6 93 386-478 6-106 (129)
176 4gcn_A Protein STI-1; structur 98.5 5.3E-07 1.8E-11 68.8 10.0 101 348-451 10-119 (127)
177 3rkv_A Putative peptidylprolyl 98.5 2.4E-07 8.1E-12 74.4 8.4 80 382-461 63-145 (162)
178 1elr_A TPR2A-domain of HOP; HO 98.5 2.5E-07 8.5E-12 70.9 8.2 98 382-479 4-110 (131)
179 1p5q_A FKBP52, FK506-binding p 98.5 1.6E-06 5.3E-11 78.8 14.2 144 295-442 128-293 (336)
180 2l6j_A TPR repeat-containing p 98.5 9.5E-08 3.3E-12 71.0 4.8 95 381-475 3-105 (111)
181 3rkv_A Putative peptidylprolyl 98.5 4.1E-07 1.4E-11 73.0 8.9 67 413-479 62-128 (162)
182 3k9i_A BH0479 protein; putativ 98.5 1.7E-07 5.7E-12 70.6 5.9 85 394-478 2-91 (117)
183 2fbn_A 70 kDa peptidylprolyl i 98.5 3E-07 1E-11 76.6 7.9 151 289-441 13-184 (198)
184 3dss_A Geranylgeranyl transfer 98.5 4.3E-05 1.5E-09 68.1 21.8 131 191-323 41-191 (331)
185 4b4t_Q 26S proteasome regulato 98.4 1.6E-05 5.3E-10 75.1 19.8 194 216-409 10-243 (434)
186 3ro3_A PINS homolog, G-protein 98.4 6.6E-07 2.3E-11 71.4 8.4 94 384-477 51-158 (164)
187 1ihg_A Cyclophilin 40; ppiase 98.4 7.8E-07 2.7E-11 81.8 9.9 138 312-470 224-363 (370)
188 1dce_A Protein (RAB geranylger 98.4 2.1E-05 7.3E-10 76.4 19.2 167 296-466 45-244 (567)
189 3ro3_A PINS homolog, G-protein 98.4 2.7E-06 9.3E-11 67.7 10.5 132 313-444 11-159 (164)
190 3n71_A Histone lysine methyltr 98.4 3.5E-06 1.2E-10 80.0 12.6 124 355-478 318-465 (490)
191 2if4_A ATFKBP42; FKBP-like, al 98.4 1.5E-06 5E-11 79.1 9.7 153 280-449 179-334 (338)
192 1wao_1 Serine/threonine protei 98.3 3.9E-06 1.3E-10 80.1 12.0 113 322-438 17-134 (477)
193 1na3_A Designed protein CTPR2; 98.3 2.7E-06 9.2E-11 60.2 8.3 81 382-462 9-91 (91)
194 1zu2_A Mitochondrial import re 98.3 6.3E-07 2.1E-11 69.7 4.9 83 396-478 16-121 (158)
195 3ma5_A Tetratricopeptide repea 98.3 2.6E-06 8.9E-11 61.8 7.8 66 412-477 5-70 (100)
196 2hr2_A Hypothetical protein; a 98.3 2.2E-06 7.5E-11 66.8 7.5 74 384-457 59-145 (159)
197 2kat_A Uncharacterized protein 98.2 2.7E-06 9.1E-11 63.6 7.2 81 364-446 3-85 (115)
198 3bee_A Putative YFRE protein; 98.2 6.5E-06 2.2E-10 58.3 7.9 70 411-480 3-75 (93)
199 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 6.5E-06 2.2E-10 78.2 10.1 66 414-479 317-382 (457)
200 1dce_A Protein (RAB geranylger 98.1 3.3E-05 1.1E-09 75.1 13.1 152 325-480 43-224 (567)
201 2kat_A Uncharacterized protein 98.0 1.4E-05 4.8E-10 59.5 7.5 78 400-477 3-82 (115)
202 2l6j_A TPR repeat-containing p 98.0 1.3E-05 4.6E-10 59.0 7.2 68 413-480 3-70 (111)
203 3lvg_A Clathrin heavy chain 1; 98.0 1.9E-08 6.7E-13 91.0 -9.9 392 31-471 52-477 (624)
204 1klx_A Cysteine rich protein B 98.0 5.5E-05 1.9E-09 58.4 10.9 109 326-443 10-126 (138)
205 1zu2_A Mitochondrial import re 98.0 8.5E-06 2.9E-10 63.3 5.8 91 361-453 17-130 (158)
206 1ihg_A Cyclophilin 40; ppiase 98.0 5.6E-05 1.9E-09 69.4 12.2 92 281-374 224-335 (370)
207 2kc7_A BFR218_protein; tetratr 98.0 1.5E-05 5E-10 57.5 6.7 82 388-477 6-90 (99)
208 1klx_A Cysteine rich protein B 97.9 0.00031 1.1E-08 54.1 12.9 112 360-479 9-128 (138)
209 1na3_A Designed protein CTPR2; 97.9 3.7E-05 1.3E-09 54.1 7.0 67 413-479 8-74 (91)
210 3n71_A Histone lysine methyltr 97.8 0.00011 3.8E-09 69.7 10.5 123 320-442 318-463 (490)
211 3ma5_A Tetratricopeptide repea 97.7 0.0001 3.4E-09 53.2 7.4 67 380-446 5-73 (100)
212 3qww_A SET and MYND domain-con 97.7 6.4E-05 2.2E-09 70.1 7.5 84 394-477 310-411 (433)
213 2kc7_A BFR218_protein; tetratr 97.7 4.4E-05 1.5E-09 54.9 4.9 61 420-480 6-67 (99)
214 3qwp_A SET and MYND domain-con 97.6 0.00015 5E-09 67.8 8.3 87 390-476 295-399 (429)
215 3qww_A SET and MYND domain-con 97.5 0.00054 1.8E-08 63.9 11.0 95 358-452 310-425 (433)
216 3ly7_A Transcriptional activat 97.4 0.0039 1.3E-07 55.8 14.1 137 310-448 193-344 (372)
217 2v5f_A Prolyl 4-hydroxylase su 97.4 0.00099 3.4E-08 48.2 8.7 75 381-455 4-87 (104)
218 3qwp_A SET and MYND domain-con 97.4 0.00079 2.7E-08 62.8 10.1 101 353-453 294-415 (429)
219 3mkq_A Coatomer beta'-subunit; 97.4 0.011 3.6E-07 60.7 19.3 152 127-305 609-761 (814)
220 3ly7_A Transcriptional activat 97.2 0.0009 3.1E-08 59.8 8.4 135 343-481 191-343 (372)
221 3u64_A Protein TP_0956; tetrat 97.2 0.0012 4.3E-08 56.4 8.7 87 399-485 180-277 (301)
222 3bee_A Putative YFRE protein; 97.1 0.0044 1.5E-07 43.6 9.5 71 379-449 3-78 (93)
223 1pc2_A Mitochondria fission pr 97.1 0.0026 8.9E-08 48.8 8.7 91 362-454 14-111 (152)
224 1wy6_A Hypothetical protein ST 97.0 0.03 1E-06 41.3 12.9 140 322-480 18-157 (172)
225 1pc2_A Mitochondria fission pr 97.0 0.0013 4.4E-08 50.5 6.0 81 399-479 15-102 (152)
226 1qsa_A Protein (soluble lytic 96.9 0.36 1.2E-05 47.0 30.3 314 127-455 16-356 (618)
227 3mkq_A Coatomer beta'-subunit; 96.9 0.023 7.8E-07 58.2 16.0 155 219-409 608-763 (814)
228 3lvg_A Clathrin heavy chain 1; 96.7 0.00014 4.7E-09 66.5 -2.0 258 148-433 54-323 (624)
229 2v5f_A Prolyl 4-hydroxylase su 96.4 0.0087 3E-07 43.1 6.8 67 413-479 4-77 (104)
230 4ady_A RPN2, 26S proteasome re 96.3 1.1 3.8E-05 45.5 31.9 249 189-442 384-657 (963)
231 1wy6_A Hypothetical protein ST 96.3 0.18 6.1E-06 37.3 12.5 137 128-276 18-156 (172)
232 3mkq_B Coatomer subunit alpha; 96.2 0.22 7.7E-06 39.2 13.9 128 289-440 14-141 (177)
233 4h7y_A Dual specificity protei 96.2 0.021 7E-07 43.2 7.5 109 345-455 12-135 (161)
234 3mkq_B Coatomer subunit alpha; 96.2 0.35 1.2E-05 38.1 14.8 102 188-306 14-115 (177)
235 1nzn_A CGI-135 protein, fissio 96.0 0.077 2.6E-06 39.1 9.8 90 363-454 18-114 (126)
236 4h7y_A Dual specificity protei 95.7 0.1 3.6E-06 39.4 9.3 98 309-409 11-121 (161)
237 1nzn_A CGI-135 protein, fissio 95.5 0.036 1.2E-06 40.8 6.2 83 397-479 16-105 (126)
238 4gns_B Protein CSD3, chitin bi 95.4 0.1 3.4E-06 51.8 11.2 55 421-475 344-398 (754)
239 4ady_A RPN2, 26S proteasome re 95.1 3.4 0.00012 42.1 28.5 22 154-175 236-257 (963)
240 3u64_A Protein TP_0956; tetrat 94.9 0.31 1.1E-05 41.9 11.2 64 212-275 201-270 (301)
241 3ffl_A Anaphase-promoting comp 94.0 0.16 5.6E-06 39.3 6.7 29 448-476 122-150 (167)
242 3ffl_A Anaphase-promoting comp 93.6 0.48 1.6E-05 36.7 8.7 124 286-423 26-164 (167)
243 1qsa_A Protein (soluble lytic 93.4 6.1 0.00021 38.5 30.2 170 294-476 228-409 (618)
244 1y8m_A FIS1; mitochondria, unk 93.1 0.79 2.7E-05 34.4 8.9 77 377-453 34-116 (144)
245 3o48_A Mitochondria fission 1 92.7 0.23 7.7E-06 36.8 5.5 75 379-453 37-117 (134)
246 2ff4_A Probable regulatory pro 92.5 0.25 8.5E-06 45.3 6.9 56 386-441 175-232 (388)
247 3lpz_A GET4 (YOR164C homolog); 92.3 5.5 0.00019 35.1 21.4 181 157-374 21-215 (336)
248 4b4t_P 26S proteasome regulato 92.1 4.2 0.00014 37.9 14.7 186 223-409 29-245 (445)
249 1y8m_A FIS1; mitochondria, unk 92.0 2.5 8.4E-05 31.8 10.4 45 432-476 60-105 (144)
250 3o48_A Mitochondria fission 1 91.9 1.2 4.1E-05 32.9 8.5 45 364-409 61-105 (134)
251 3ltj_A Alpharep-4; protein eng 91.6 4.5 0.00015 32.6 18.5 85 141-225 21-105 (201)
252 4fhn_B Nucleoporin NUP120; pro 91.5 6.3 0.00021 41.9 17.0 157 183-357 816-982 (1139)
253 3ltm_A Alpha-REP4; protein eng 91.2 5.2 0.00018 32.5 19.4 90 136-225 21-110 (211)
254 2wpv_A GET4, UPF0363 protein Y 91.2 7.1 0.00024 34.1 21.0 181 158-375 23-217 (312)
255 3txn_A 26S proteasome regulato 91.1 8.7 0.0003 34.9 24.4 284 182-479 22-345 (394)
256 3lpz_A GET4 (YOR164C homolog); 90.9 7.9 0.00027 34.1 19.9 167 283-476 38-215 (336)
257 3txn_A 26S proteasome regulato 90.4 10 0.00035 34.4 21.4 216 215-442 104-342 (394)
258 4fhn_B Nucleoporin NUP120; pro 90.3 1.4 4.9E-05 46.8 10.9 94 386-479 846-969 (1139)
259 4gns_B Protein CSD3, chitin bi 90.2 1.5 5E-05 43.7 10.0 51 320-372 346-397 (754)
260 4b4t_P 26S proteasome regulato 89.4 14 0.00046 34.4 22.2 199 192-408 29-264 (445)
261 1v54_E Cytochrome C oxidase po 89.1 2.8 9.4E-05 29.2 7.7 63 225-288 25-87 (109)
262 1v54_E Cytochrome C oxidase po 88.5 2.3 7.8E-05 29.6 6.9 63 326-390 25-87 (109)
263 1zbp_A Hypothetical protein VP 88.3 0.52 1.8E-05 39.8 4.5 56 391-446 6-63 (273)
264 2ff4_A Probable regulatory pro 88.1 4.1 0.00014 37.1 11.0 72 314-386 174-249 (388)
265 2wpv_A GET4, UPF0363 protein Y 88.1 13 0.00044 32.5 19.7 167 283-475 36-215 (312)
266 3ltm_A Alpha-REP4; protein eng 86.8 11 0.00038 30.4 20.2 166 164-338 18-183 (211)
267 1zbp_A Hypothetical protein VP 85.3 13 0.00046 31.4 11.4 118 320-449 6-135 (273)
268 2uwj_G Type III export protein 85.0 7.6 0.00026 26.9 9.7 59 187-248 47-105 (115)
269 2uwj_G Type III export protein 84.2 8.3 0.00028 26.7 10.1 88 259-351 20-107 (115)
270 2p58_C Putative type III secre 83.6 9 0.00031 26.6 10.4 88 259-351 21-108 (116)
271 2y69_E Cytochrome C oxidase su 83.6 6.8 0.00023 29.0 7.7 61 227-288 70-130 (152)
272 2y69_E Cytochrome C oxidase su 83.3 5.1 0.00017 29.6 6.9 63 326-390 68-130 (152)
273 4b4t_R RPN7, 26S proteasome re 82.2 7.5 0.00026 36.0 9.8 62 348-409 133-195 (429)
274 3esl_A Checkpoint serine/threo 82.0 10 0.00035 30.5 8.9 47 398-444 95-145 (202)
275 4b4t_R RPN7, 26S proteasome re 81.6 9 0.00031 35.5 10.1 93 181-273 133-236 (429)
276 4a1g_A Mitotic checkpoint seri 75.6 19 0.00065 27.4 8.4 46 433-478 84-131 (152)
277 2p58_C Putative type III secre 75.2 18 0.00061 25.1 10.4 81 82-180 21-101 (116)
278 3ltj_A Alpharep-4; protein eng 74.9 30 0.001 27.5 21.7 142 126-272 37-178 (201)
279 4b4t_S RPN3, 26S proteasome re 70.5 20 0.00069 33.7 8.9 64 31-97 229-299 (523)
280 2wvi_A Mitotic checkpoint seri 70.1 24 0.00082 27.3 7.9 33 412-444 94-126 (164)
281 2qx5_A Nucleoporin NIC96; mRNA 69.9 59 0.002 31.9 12.4 39 121-159 156-197 (661)
282 3bqo_A Telomeric repeat-bindin 67.4 12 0.00042 29.6 5.8 49 421-469 124-172 (211)
283 3esl_A Checkpoint serine/threo 65.7 51 0.0017 26.4 10.4 53 226-278 95-148 (202)
284 1oyz_A Hypothetical protein YI 62.6 70 0.0024 27.0 24.2 19 145-163 34-52 (280)
285 1oyz_A Hypothetical protein YI 62.1 71 0.0024 26.9 21.7 9 389-397 242-250 (280)
286 4gq2_M Nucleoporin NUP120; bet 58.8 32 0.0011 35.7 8.9 85 352-442 816-925 (950)
287 1wdy_A 2-5A-dependent ribonucl 53.9 87 0.003 26.1 9.9 23 40-63 7-29 (285)
288 3eiq_C Programmed cell death p 53.1 1.2E+02 0.0043 26.9 12.9 73 150-222 219-296 (358)
289 2d2s_A Exocyst complex compone 51.6 80 0.0027 26.1 8.5 23 216-238 24-46 (235)
290 4b4t_S RPN3, 26S proteasome re 51.6 51 0.0017 31.1 8.0 59 347-409 232-297 (523)
291 2r9g_A AAA ATPase, central reg 48.8 1E+02 0.0035 24.6 9.3 63 213-276 14-84 (204)
292 2ion_A PDCD4, programmed cell 48.6 80 0.0027 24.0 7.5 65 283-347 12-81 (152)
293 3bu8_A Telomeric repeat-bindin 47.2 20 0.00068 28.9 3.9 48 362-409 88-141 (235)
294 3bge_A Predicted ATPase; struc 46.6 1.1E+02 0.0037 24.4 8.0 47 213-259 7-56 (201)
295 4a1g_A Mitotic checkpoint seri 46.2 95 0.0032 23.6 9.1 50 229-278 84-134 (152)
296 2nsz_A Programmed cell death p 45.7 86 0.003 22.9 7.7 65 124-188 14-83 (129)
297 2nsz_A Programmed cell death p 43.9 92 0.0032 22.8 8.8 64 284-347 11-79 (129)
298 4aez_C MAD3, mitotic spindle c 43.4 1.2E+02 0.004 24.8 8.0 52 328-380 131-183 (223)
299 2ion_A PDCD4, programmed cell 41.8 74 0.0025 24.1 6.4 66 123-188 15-85 (152)
300 3bu8_A Telomeric repeat-bindin 41.3 1.1E+02 0.0037 24.8 7.2 60 327-389 88-154 (235)
301 2d2s_A Exocyst complex compone 40.9 1.1E+02 0.0038 25.3 7.8 90 316-409 23-118 (235)
302 4gq2_M Nucleoporin NUP120; bet 40.8 2.7E+02 0.0093 28.8 12.4 128 184-325 815-950 (950)
303 3ygs_P Procaspase 9; apoptosis 40.8 53 0.0018 22.6 5.0 36 194-229 52-87 (97)
304 3ctd_A Putative ATPase, AAA fa 40.7 1.4E+02 0.0049 24.0 8.5 67 209-275 31-105 (213)
305 2wvi_A Mitotic checkpoint seri 39.0 1.3E+02 0.0045 23.1 9.9 51 229-279 79-130 (164)
306 1wgl_A TOLL-interacting protei 38.4 28 0.00095 21.4 2.8 23 461-483 36-58 (59)
307 3ygs_P Procaspase 9; apoptosis 36.9 33 0.0011 23.7 3.4 39 49-89 51-89 (97)
308 4aez_C MAD3, mitotic spindle c 36.1 1.3E+02 0.0045 24.5 7.2 46 399-444 131-180 (223)
309 2p1h_A APAF-1, apoptotic prote 33.9 1.1E+02 0.0037 20.7 5.9 33 193-225 50-82 (94)
310 1ya0_A SMG-7 transcript varian 33.2 1.1E+02 0.0037 28.8 7.3 73 388-460 158-232 (497)
311 2fe3_A Peroxide operon regulat 31.8 1.1E+02 0.0037 22.9 5.9 62 234-296 11-72 (145)
312 2fe3_A Peroxide operon regulat 30.7 1.1E+02 0.0036 22.9 5.7 37 360-397 35-71 (145)
313 3jxi_A Vanilloid receptor-rela 30.1 55 0.0019 27.2 4.5 31 74-104 8-38 (260)
314 3kae_A CDC27, possible protein 30.1 2E+02 0.0067 22.5 15.5 80 292-373 45-141 (242)
315 1ug3_A EIF4GI, eukaryotic prot 29.6 1.9E+02 0.0065 25.4 8.0 144 152-305 15-166 (339)
316 2xig_A Ferric uptake regulatio 29.3 1.6E+02 0.0054 22.1 6.5 62 234-296 16-77 (150)
317 3hra_A Ankyrin repeat family p 29.0 1.7E+02 0.0059 22.6 7.2 9 52-60 18-26 (201)
318 2xig_A Ferric uptake regulatio 28.8 1.5E+02 0.0053 22.2 6.4 37 360-397 40-76 (150)
319 3bqo_A Telomeric repeat-bindin 27.7 1.1E+02 0.0038 24.4 5.2 45 195-239 94-146 (211)
320 4ets_A Ferric uptake regulatio 26.7 1.2E+02 0.0043 23.1 5.5 40 358-397 44-84 (162)
321 2ijq_A Hypothetical protein; s 26.3 2.2E+02 0.0075 21.8 7.0 57 77-142 41-100 (161)
322 2cfu_A SDSA1; SDS-hydrolase, l 26.1 1.3E+02 0.0044 29.6 6.8 64 399-465 437-500 (658)
323 1ya0_A SMG-7 transcript varian 26.0 2.9E+02 0.0098 26.0 8.8 77 348-426 154-232 (497)
324 4ets_A Ferric uptake regulatio 25.6 1.3E+02 0.0045 23.0 5.5 69 227-296 14-85 (162)
325 3us6_A Histidine-containing ph 25.4 2.2E+02 0.0075 21.5 7.0 21 186-206 100-120 (153)
326 2b7e_A PRE-mRNA processing pro 24.3 1.3E+02 0.0044 18.5 4.0 30 84-113 2-31 (59)
327 3ubw_A 14-3-3E, 14-3-3 protein 24.2 3.2E+02 0.011 22.9 11.3 62 211-272 32-94 (261)
328 1wdy_A 2-5A-dependent ribonucl 24.0 3E+02 0.01 22.6 9.2 47 258-304 192-240 (285)
329 2w57_A Ferric uptake regulatio 23.5 2.2E+02 0.0077 21.3 6.4 62 234-296 6-68 (150)
330 2fu4_A Ferric uptake regulatio 23.1 1.6E+02 0.0054 19.0 6.7 60 235-295 7-67 (83)
331 3eiq_C Programmed cell death p 21.7 4.3E+02 0.015 23.5 17.6 65 283-347 220-289 (358)
332 2o03_A Probable zinc uptake re 21.6 1.3E+02 0.0044 21.9 4.6 35 260-294 25-59 (131)
333 2crb_A Nuclear receptor bindin 21.6 85 0.0029 21.3 3.0 24 417-440 18-41 (97)
334 2o03_A Probable zinc uptake re 21.3 1.5E+02 0.005 21.6 4.8 46 316-361 15-60 (131)
335 1bpo_A Protein (clathrin); cla 21.1 5E+02 0.017 24.1 11.1 31 275-305 356-386 (494)
336 3eyy_A Putative iron uptake re 20.6 1.8E+02 0.006 21.7 5.2 60 235-296 9-68 (145)
337 1mzb_A Ferric uptake regulatio 20.5 2.6E+02 0.0087 20.4 6.7 60 235-295 8-68 (136)
338 2r9g_A AAA ATPase, central reg 20.5 3.3E+02 0.011 21.8 9.6 62 317-380 17-86 (204)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-40 Score=332.72 Aligned_cols=424 Identities=10% Similarity=-0.014 Sum_probs=376.5
Q ss_pred CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHH
Q 011249 31 HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSS 108 (490)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 108 (490)
+++. .|+.++..|.+.|+ +++|..+|+++. .|+. .++..++.+|.+.|++++|..+|+.+... +++..+++.
T Consensus 82 ~~~~--~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 155 (597)
T 2xpi_A 82 SRED--YLRLWRHDALMQQQ-YKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYL 155 (597)
T ss_dssp CHHH--HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHH
T ss_pred HHHH--HHHHHHHHHHHccC-chHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHH
Confidence 6777 89999999999999 999999999985 5666 78899999999999999999999998654 567777766
Q ss_pred HHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCC-------------------CHhHHHHHHHHHHhCCChHHHHH
Q 011249 109 VLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAER-------------------NVISWSAMVAGYANCGNMKAAKE 169 (490)
Q Consensus 109 ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~a~~ 169 (490)
++. +|.+.|++++|+++|+++... +..+|+.++.+|.+.|++++|++
T Consensus 156 l~~--------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 221 (597)
T 2xpi_A 156 AAF--------------CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE 221 (597)
T ss_dssp HHH--------------HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHH--------------HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHH
Confidence 665 489999999999999965443 47899999999999999999999
Q ss_pred HHHHhccCC---chhHHHH--------------------------------------HHHHHhcCChhHHHHHHhhcCC-
Q 011249 170 FYDRMTEKN---SVTWVAM--------------------------------------IAGYGKCGEVREAKKVFDEISE- 207 (490)
Q Consensus 170 ~~~~~~~~~---~~~~~~l--------------------------------------~~~~~~~~~~~~A~~~~~~~~~- 207 (490)
+|+++.+.+ ...+..+ +..|.+.|++++|.++|+++.+
T Consensus 222 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 301 (597)
T 2xpi_A 222 CYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG
T ss_pred HHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC
Confidence 999998532 2333222 4456678999999999999988
Q ss_pred -CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 011249 208 -PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNAL 286 (490)
Q Consensus 208 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 286 (490)
++..+|+.++.+|.+.|++++|+++|+++.+.+. .+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.+
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 379 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAV 379 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 8999999999999999999999999999998763 377889999999999999999999999998765 6788899999
Q ss_pred HHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChH
Q 011249 287 IHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVE 363 (490)
Q Consensus 287 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 363 (490)
+.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|+++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998864 467899999999999999999999999999853 346789999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-------CCCC--hhhHHHHHHHHhhhCChHHHH
Q 011249 364 DGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-------DFCD--AGTWGALLGACKVHVNAELGE 434 (490)
Q Consensus 364 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~--~~~~~~l~~~~~~~g~~~~a~ 434 (490)
+|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++. ..|+ ..+|..++.+|...|++++|.
T Consensus 459 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 459 LANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999983 45578899999999999999999999998885 2565 679999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 435 IAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 435 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
+.++++.+.+|+++.+|..++.+|.+.|++++|.+.++++.+..+
T Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999988654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.6e-39 Score=319.57 Aligned_cols=429 Identities=9% Similarity=0.016 Sum_probs=371.3
Q ss_pred hhhhchhhHHHHHHHHhhhcCCCCchhHhHHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCChh
Q 011249 8 PRSKTFNQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAHFR 85 (490)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 85 (490)
...|+++.|..+++.+.+ ..|+.. .+..++..|.+.|+ +++|..+|+++. .++. .+++.++.+|.+.|+++
T Consensus 95 ~~~g~~~~A~~~~~~~~~---~~p~~~--~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 167 (597)
T 2xpi_A 95 LMQQQYKCAAFVGEKVLD---ITGNPN--DAFWLAQVYCCTGD-YARAKCLLTKEDLYNRSS-ACRYLAAFCLVKLYDWQ 167 (597)
T ss_dssp HHTTCHHHHHHHHHHHHH---HHCCHH--HHHHHHHHHHHTTC-HHHHHHHHHHTCGGGTCH-HHHHHHHHHHHHTTCHH
T ss_pred HHccCchHHHHHHHHHHh---hCCCch--HHHHHHHHHHHcCc-HHHHHHHHHHHhccccch-hHHHHHHHHHHHHhhHH
Confidence 345788889999988876 557778 89999999999999 999999999984 4455 89999999999999999
Q ss_pred HHHHHHHHHHhc---------------CCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C
Q 011249 86 QSILLYAKMHRL---------------GVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE--R-N 147 (490)
Q Consensus 86 ~A~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~ 147 (490)
+|.++|+++... |..++..++..+.. +|.+.|++++|+++|+++.+ | +
T Consensus 168 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------~~~~~g~~~~A~~~~~~~~~~~p~~ 233 (597)
T 2xpi_A 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQ--------------VYTNLSNFDRAKECYKEALMVDAKC 233 (597)
T ss_dssp HHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHH--------------HHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhccCCccccccccccccccccccchhHHHHHHHHH--------------HHHHcCCHHHHHHHHHHHHHhCchh
Confidence 999999853221 22334556655554 58999999999999999975 3 2
Q ss_pred HhHHHHH--------------------------------------HHHHHhCCChHHHHHHHHHhcc--CCchhHHHHHH
Q 011249 148 VISWSAM--------------------------------------VAGYANCGNMKAAKEFYDRMTE--KNSVTWVAMIA 187 (490)
Q Consensus 148 ~~~~~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~ 187 (490)
...+..+ +..|.+.|++++|.++|+++.+ ++..++..++.
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 313 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 3333333 4556678999999999999987 69999999999
Q ss_pred HHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHH
Q 011249 188 GYGKCGEVREAKKVFDEISE---PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMA 264 (490)
Q Consensus 188 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 264 (490)
+|.+.|++++|.++|+++.+ .+..++..++.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999864 577889999999999999999999999999654 44788999999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011249 265 AILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEG 341 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 341 (490)
..+|+++.+.. +.+..+++.++.+|.+.|++++|+++|+++.+ .+..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999998875 56788999999999999999999999998765 478899999999999999999999999999853
Q ss_pred CCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc---CCCCC--chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCCh
Q 011249 342 IEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVF---GIKPL--TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDA 414 (490)
Q Consensus 342 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~ 414 (490)
+.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++. .+.+.
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 3467899999999999999999999999998742 55676 6799999999999999999999999876 45578
Q ss_pred hhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 011249 415 GTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYAS 460 (490)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 460 (490)
.+|..++.+|...|++++|.+.++++++.+|+++.++..++.+|..
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999887653
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.4e-30 Score=245.07 Aligned_cols=369 Identities=12% Similarity=0.071 Sum_probs=317.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhH
Q 011249 74 LIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE---RNVIS 150 (490)
Q Consensus 74 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 150 (490)
+...+.+.|++++|.+.++.+.+. .|+......++.. .+...|++++|...++...+ .+..+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~-------------~~~~~~~~~~a~~~~~~a~~~~p~~~~~ 69 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSS-------------IHFQCRRLDRSAHFSTLAIKQNPLLAEA 69 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH-------------HHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH-------------HHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence 456678899999999999988876 5666555444443 47888999999999988765 36778
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhcc--C-CchhHHHHHHHHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHHHhcC
Q 011249 151 WSAMVAGYANCGNMKAAKEFYDRMTE--K-NSVTWVAMIAGYGKCGEVREAKKVFDEISE---PDASCWAAMTVCYVQNG 224 (490)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g 224 (490)
|..+..++.+.|++++|+..|+++.+ | +..+|..++.++...|++++|.+.|+++.+ .+...+..+...+...|
T Consensus 70 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 149 (388)
T 1w3b_A 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG 149 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc
Confidence 99999999999999999999999874 4 556789999999999999999999998765 34567788889999999
Q ss_pred ChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 011249 225 YAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFS 304 (490)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 304 (490)
++++|++.|+++.+.. +-+..++..+..++...|++++|...++++.+.. |.+...+..+...+...|++++|...|+
T Consensus 150 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998764 2256788999999999999999999999998876 5677888899999999999999999998
Q ss_pred cccC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCC
Q 011249 305 RIKN--K-DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKP 380 (490)
Q Consensus 305 ~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 380 (490)
+... | +..++..++.++...|++++|...|+++.+. .| +..++..+...+...|++++|...++++.+ ..+.
T Consensus 228 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~ 303 (388)
T 1w3b_A 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPT 303 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTT
T ss_pred HHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcc
Confidence 8765 3 5788999999999999999999999999985 44 466888999999999999999999999998 3566
Q ss_pred CchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 011249 381 LTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIY 458 (490)
Q Consensus 381 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 458 (490)
+..++..++..+.+.|++++|.+.++++. .+.+..++..++.++...|++++|.+.++++++..|+++.++..++.++
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHH
Confidence 78889999999999999999999998887 3445778999999999999999999999999999999999999999988
Q ss_pred HhcCC
Q 011249 459 ASMGK 463 (490)
Q Consensus 459 ~~~g~ 463 (490)
.+.|+
T Consensus 384 ~~~~~ 388 (388)
T 1w3b_A 384 KEMQD 388 (388)
T ss_dssp HHTCC
T ss_pred HHccC
Confidence 87764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.6e-29 Score=237.74 Aligned_cols=349 Identities=14% Similarity=0.089 Sum_probs=310.3
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHhcc--C-CchhHHHHHHHHHhcCChhH
Q 011249 124 ICGYTKIGLMDDAQRLFDSMAE--R-NVISWSAMVAGYANCGNMKAAKEFYDRMTE--K-NSVTWVAMIAGYGKCGEVRE 197 (490)
Q Consensus 124 ~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 197 (490)
...+.+.|++++|++.++.+.+ | +...+..+...+...|++++|...++...+ | +..+|..++.++.+.|++++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 3457889999999999998865 4 566788888999999999999999998875 3 67789999999999999999
Q ss_pred HHHHHhhcCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhc
Q 011249 198 AKKVFDEISE---PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEG 274 (490)
Q Consensus 198 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 274 (490)
|+..|+++.+ .+..+|..++.++.+.|++++|++.|+++.+..+ .+...+..+...+...|++++|...++++.+.
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999998864 4566899999999999999999999999998642 24556778888899999999999999999887
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHH
Q 011249 275 CCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFI 350 (490)
Q Consensus 275 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~ 350 (490)
. |.+..++..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+. .| +..++.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHH
Confidence 5 56788899999999999999999999999875 35678999999999999999999999999884 45 467888
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhC
Q 011249 351 GVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHV 428 (490)
Q Consensus 351 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 428 (490)
.+...+...|++++|...++++.+ ..+.++..+..++.++.+.|++++|.+.|+++. .+.+..++..+...+...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Confidence 999999999999999999999987 345567789999999999999999999999887 5667889999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcc
Q 011249 429 NAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 429 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 478 (490)
++++|++.++++++..|+++.++..++.++.+.|++++|.+.++++.+..
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999998754
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4.7e-28 Score=231.56 Aligned_cols=183 Identities=10% Similarity=0.124 Sum_probs=154.2
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCC---------hHHHHHHHHHHHhcCCCCchh
Q 011249 211 SCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGD---------VEMAAILAKHVDEGCCDRTNY 281 (490)
Q Consensus 211 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~ 281 (490)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35777888888888888888888888888888888888888888876554 577888888888888888888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhc
Q 011249 282 VSNALIHMHSKCGYLDLAWREFSRIKN----KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACS 357 (490)
Q Consensus 282 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 357 (490)
+|+++|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 888888888888888888888888864 7888888888888888888888888888888888888888888888888
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhh
Q 011249 358 HGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGR 394 (490)
Q Consensus 358 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (490)
+.|++++|.+++++|.+. +..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 888888888888888885 888888888888887765
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.7e-26 Score=220.53 Aligned_cols=265 Identities=10% Similarity=-0.081 Sum_probs=221.6
Q ss_pred HHhHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCc--------ccChhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 011249 210 ASCWAAMTVCYVQ---NGYAKAAIEMYKVMRQ-----ENV--------RISEVAMVGAISACTQLGDVEMAAILAKHVDE 273 (490)
Q Consensus 210 ~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 273 (490)
...+......+.. .|++++|+..|+++.+ ... +.+...+..+..++...|++++|...++.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4455555555555 8999999999999887 311 22356778888889999999999999999988
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH
Q 011249 274 GCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFI 350 (490)
Q Consensus 274 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 350 (490)
.... ...+..++.++...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus 266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 342 (514)
T 2gw1_A 266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYI 342 (514)
T ss_dssp HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHH
T ss_pred hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHH
Confidence 7633 88888899999999999999999998765 366788999999999999999999999998853 22456888
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc----CCCC----hhhHHHHHH
Q 011249 351 GVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK----DFCD----AGTWGALLG 422 (490)
Q Consensus 351 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~ 422 (490)
.+...+...|++++|...++++.+. .+.+...+..++..+...|++++|...++++. ..+. ...+..+..
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 8889999999999999999999873 45567888899999999999999999998776 1122 338888999
Q ss_pred HHhh---hCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 423 ACKV---HVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 423 ~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
.+.. .|++++|.+.++++.+..|+++.++..++.++.+.|++++|.+.++++.+.++
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 9999 99999999999999999999999999999999999999999999999887654
No 7
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=5.7e-27 Score=224.09 Aligned_cols=200 Identities=14% Similarity=0.188 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHcCcccCh-hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC---------h
Q 011249 227 KAAIEMYKVMRQENVRISE-VAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGY---------L 296 (490)
Q Consensus 227 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 296 (490)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|.+.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777765544 46888999999999999999999999999999999999999999987665 6
Q ss_pred HHHHHHHhcccC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 011249 297 DLAWREFSRIKN----KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELM 372 (490)
Q Consensus 297 ~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 372 (490)
+.|.++|++|.. ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 889999999975 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc---CCCChhhHHHHHHHHhhh
Q 011249 373 TRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK---DFCDAGTWGALLGACKVH 427 (490)
Q Consensus 373 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~ 427 (490)
.+. |+.||..+|+.|+.+|++.|+.++|.+++++|. ..|+..||+.++..|...
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 995 999999999999999999999999999999998 789999999999888653
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=3.4e-25 Score=217.64 Aligned_cols=420 Identities=12% Similarity=0.005 Sum_probs=299.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-hhHHHHHHHh
Q 011249 37 YAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSG-FTFSSVLNAC 113 (490)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~ 113 (490)
.+..+...+.+.|+ +++|.+.|+++. .|+....|..+..++.+.|++++|++.|+++.+. .|+. ..+..+
T Consensus 27 ~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l---- 99 (537)
T 3fp2_A 27 QLKNRGNHFFTAKN-FNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRR---- 99 (537)
T ss_dssp HHHHHHHHHHHTTC-CC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHH----
T ss_pred HHHHHHHHHHHhcc-HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHH----
Confidence 78889999999999 999999999885 5666588999999999999999999999999886 3443 333322
Q ss_pred cCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccC------CchhHHHHHH
Q 011249 114 ARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEK------NSVTWVAMIA 187 (490)
Q Consensus 114 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~ 187 (490)
...+...|++++|+..|+.+ ..++......+..+...+....|...++++... ........+.
T Consensus 100 ----------a~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 168 (537)
T 3fp2_A 100 ----------ASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168 (537)
T ss_dssp ----------HHHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH
T ss_pred ----------HHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH
Confidence 33588899999999999744 333333333445566666678899999988753 2222344555
Q ss_pred HHHhcCChhHHHHHHhhcCCCCHH---hHHHHHHHHHh--------cCChHHHHHHHHHHHHcCcccC------hhhHHH
Q 011249 188 GYGKCGEVREAKKVFDEISEPDAS---CWAAMTVCYVQ--------NGYAKAAIEMYKVMRQENVRIS------EVAMVG 250 (490)
Q Consensus 188 ~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~------~~~~~~ 250 (490)
.+....+.+.+...+......+.. ....+...+.. .|++++|+.+++++.+...... ..++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCY 248 (537)
T ss_dssp HHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHH
Confidence 566677777777777666653322 33333333322 2477888888888876532210 224666
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCCh
Q 011249 251 AISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKS 327 (490)
Q Consensus 251 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 327 (490)
+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...|+++.+ .+..+|..+...+...|++
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Confidence 6677778888888888888888765 3367777788888888888888888887764 3567788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHh
Q 011249 328 QEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMD 407 (490)
Q Consensus 328 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 407 (490)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|.+.|++
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88888888888742 223467777888888888888888888888873 455567788888888888888888888877
Q ss_pred cc--C--CC----ChhhHHHHHHHHhhh----------CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHH
Q 011249 408 YK--D--FC----DAGTWGALLGACKVH----------VNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEI 469 (490)
Q Consensus 408 ~~--~--~~----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 469 (490)
+. . .+ ....+......+... |++++|...++++.+..|+++.++..++.+|.+.|++++|.+
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 65 1 11 112234445566666 888888888888888888888888888888888888888888
Q ss_pred HHHHhhhccc
Q 011249 470 VKMMISETEK 479 (490)
Q Consensus 470 ~~~~~~~~~~ 479 (490)
.++++.+...
T Consensus 484 ~~~~al~~~~ 493 (537)
T 3fp2_A 484 LFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhCC
Confidence 8888776543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=8e-25 Score=209.99 Aligned_cols=327 Identities=10% Similarity=0.061 Sum_probs=267.6
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHhcc--C-CchhHHHHHHHHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHH
Q 011249 147 NVISWSAMVAGYANCGNMKAAKEFYDRMTE--K-NSVTWVAMIAGYGKCGEVREAKKVFDEISE---PDASCWAAMTVCY 220 (490)
Q Consensus 147 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 220 (490)
+...+..++..+.+.|++++|+.+|+++.+ | +..++..++.++...|++++|+..|+++.+ .+...+..++.+|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 556788888889999999999999998875 3 677888888999999999999999988764 4577888899999
Q ss_pred HhcCChHHHHHHHHHHHHcCcccCh---hhHHHH------------HHHHhccCChHHHHHHHHHHHhcCCCCchhHHHH
Q 011249 221 VQNGYAKAAIEMYKVMRQENVRISE---VAMVGA------------ISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNA 285 (490)
Q Consensus 221 ~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 285 (490)
.+.|++++|.+.|+++.+.... +. ..+..+ ...+...|++++|...++.+.+.. +.+..++..
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 182 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELREL 182 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 9999999999999998875321 22 444444 445888999999999999998876 667888999
Q ss_pred HHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHH---------
Q 011249 286 LIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQ-VTFIGV--------- 352 (490)
Q Consensus 286 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l--------- 352 (490)
++.+|.+.|++++|...|+++.+ .++.+|..++.+|...|++++|...|+++.+. .|+. ..+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999998865 46789999999999999999999999999874 4443 344333
Q ss_pred ---HHHhcCCCChHHHHHHHHHHHHHcCCCCC-----chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHH
Q 011249 353 ---LTACSHGGLVEDGCKQFELMTRVFGIKPL-----TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLG 422 (490)
Q Consensus 353 ---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 422 (490)
...+...|++++|...++++.+. .|+ ...+..++.++.+.|++++|...++++. .+.+...|..++.
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 77889999999999999999874 333 3477888999999999999999999876 4557889999999
Q ss_pred HHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHH------------HHhcC-----CcchHHHHHHH-hhhcccc
Q 011249 423 ACKVHVNAELGEIAARHLLELGPEKTGNSALLANI------------YASMG-----KWKDSEIVKMM-ISETEKK 480 (490)
Q Consensus 423 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~~~ 480 (490)
+|...|++++|.+.++++++..|+++.++..++.+ |...| +.+++.+.+++ ..+..+.
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999844 55555 45666777775 4443333
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.1e-25 Score=214.52 Aligned_cols=397 Identities=11% Similarity=-0.020 Sum_probs=289.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-hhHHHHHHHh
Q 011249 37 YAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSG-FTFSSVLNAC 113 (490)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~ 113 (490)
.+..+...+.+.|+ +++|...|+++. .|+. ..|..+..++...|++++|+..|+++.+. .|+. ..+..+.
T Consensus 8 ~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~--- 80 (514)
T 2gw1_A 8 ALKDKGNQFFRNKK-YDDAIKYYNWALELKEDP-VFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRA--- 80 (514)
T ss_dssp HHHHHHHHHHHTSC-HHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHH---
T ss_pred HHHHHHHHHHHhcc-HHHHHHHHHHHHhcCccH-HHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHH---
Confidence 45556666666666 666666666654 3444 56666666666666666666666666654 2322 2222222
Q ss_pred cCCCChHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHhHHHHHHHHHHhCCChHHHHHH--------------------
Q 011249 114 ARVPSLLEAVICGYTKIGLMDDAQRLFDSMAE--R-NVISWSAMVAGYANCGNMKAAKEF-------------------- 170 (490)
Q Consensus 114 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~-------------------- 170 (490)
.+|...|++++|...|+++.+ | +......++..+........+.+.
T Consensus 81 -----------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 149 (514)
T 2gw1_A 81 -----------SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK 149 (514)
T ss_dssp -----------HHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------
T ss_pred -----------HHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh
Confidence 235666666666666666543 1 222222222222211111111111
Q ss_pred ------------------HHHhcc---------C-CchhHHHHHHHHHh---cCChhHHHHHHhhcCC------------
Q 011249 171 ------------------YDRMTE---------K-NSVTWVAMIAGYGK---CGEVREAKKVFDEISE------------ 207 (490)
Q Consensus 171 ------------------~~~~~~---------~-~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~------------ 207 (490)
+..... | +...+......+.. .|++++|...|+++.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 229 (514)
T 2gw1_A 150 ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNED 229 (514)
T ss_dssp -------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred HHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccc
Confidence 111100 1 14445555555554 8999999999987644
Q ss_pred -----CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhH
Q 011249 208 -----PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYV 282 (490)
Q Consensus 208 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 282 (490)
.+...+..+..++...|++++|+..++++.+.... ...+..+..++...|++++|...++.+.+.. +.+..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 306 (514)
T 2gw1_A 230 EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSV 306 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHH
T ss_pred cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHH
Confidence 13457888999999999999999999999987533 7888899999999999999999999998876 567788
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCC
Q 011249 283 SNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHG 359 (490)
Q Consensus 283 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 359 (490)
+..+..+|...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 385 (514)
T 2gw1_A 307 YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDK 385 (514)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHC
Confidence 89999999999999999999998764 467789999999999999999999999998852 33556888899999999
Q ss_pred CChHHHHHHHHHHHHHcCCCCC----chHHHHHHHHHhh---cCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCCh
Q 011249 360 GLVEDGCKQFELMTRVFGIKPL----TEHLTCMVDLLGR---SGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNA 430 (490)
Q Consensus 360 g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 430 (490)
|++++|...++++.+.....++ ...+..++.++.. .|++++|.+.++++. .+.+..++..+...+...|++
T Consensus 386 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 465 (514)
T 2gw1_A 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDI 465 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCH
Confidence 9999999999999874222232 3388899999999 999999999998876 455677889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHH
Q 011249 431 ELGEIAARHLLELGPEKTGNSALLA 455 (490)
Q Consensus 431 ~~a~~~~~~~~~~~p~~~~~~~~l~ 455 (490)
++|.+.++++.+..|+++..+..+.
T Consensus 466 ~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 466 DEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHH
Confidence 9999999999999999888777664
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=5.7e-24 Score=204.07 Aligned_cols=339 Identities=12% Similarity=0.043 Sum_probs=276.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHhcc--C-CchhHHHHHHHHHhcCChh
Q 011249 123 VICGYTKIGLMDDAQRLFDSMAE---RNVISWSAMVAGYANCGNMKAAKEFYDRMTE--K-NSVTWVAMIAGYGKCGEVR 196 (490)
Q Consensus 123 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 196 (490)
++..+.+.|++++|+.+|+++.+ .+..+|..++.++...|++++|+..|+++.+ | +..++..++.+|...|+++
T Consensus 32 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 32 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLD 111 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 34458999999999999999875 4788999999999999999999999999985 3 6778999999999999999
Q ss_pred HHHHHHhhcCC--CC-H---HhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhcc
Q 011249 197 EAKKVFDEISE--PD-A---SCWAAM------------TVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQL 258 (490)
Q Consensus 197 ~A~~~~~~~~~--~~-~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 258 (490)
+|.+.|+++.+ |+ . ..+..+ ...+...|++++|+..|+++.+.. +.+...+..+..++...
T Consensus 112 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 112 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKE 190 (450)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHC
Confidence 99999999876 33 3 555555 445899999999999999999764 33678899999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--C-ChhHHHHH------------HHHHHh
Q 011249 259 GDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--K-DVISYSSM------------ITAFAD 323 (490)
Q Consensus 259 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l------------~~~~~~ 323 (490)
|++++|...++.+.+.. +.+..++..++.+|...|++++|...|+++.+ | +...+..+ +..+..
T Consensus 191 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 269 (450)
T ss_dssp TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998875 66788999999999999999999999998865 3 34445444 788999
Q ss_pred cCChHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCCh
Q 011249 324 HGKSQEALDMFLKMRNEGIEPN-----QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQL 398 (490)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 398 (490)
.|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++++.+. .+.+...+..++.+|...|++
T Consensus 270 ~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~ 345 (450)
T 2y4t_A 270 DGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMY 345 (450)
T ss_dssp HTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCH
Confidence 99999999999999984 454 347888889999999999999999999873 455688999999999999999
Q ss_pred HHHHHHHHhcc-CCC-ChhhHHHHHHH------------HhhhC-----ChHHHHHHHHH-HHhcCCCCCc---------
Q 011249 399 EKAHSLIMDYK-DFC-DAGTWGALLGA------------CKVHV-----NAELGEIAARH-LLELGPEKTG--------- 449 (490)
Q Consensus 399 ~~A~~~~~~~~-~~~-~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~-~~~~~p~~~~--------- 449 (490)
++|...++++. ..| +...+..+..+ |...| +.+++.+.+++ +++..|++..
T Consensus 346 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~ 425 (450)
T 2y4t_A 346 DEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAE 425 (450)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHH
Confidence 99999999886 334 45566666633 33344 66788888887 6777776432
Q ss_pred -hHHHHHHHHHhcCCcchH
Q 011249 450 -NSALLANIYASMGKWKDS 467 (490)
Q Consensus 450 -~~~~l~~~~~~~g~~~~A 467 (490)
.+..+..+|...|+.+++
T Consensus 426 ~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 426 KKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHHHhCCHHHH
Confidence 445566666666655543
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=2.1e-23 Score=204.81 Aligned_cols=421 Identities=9% Similarity=-0.003 Sum_probs=323.0
Q ss_pred cchhhhhhchhhHHHHHHHHhhhcCCC-CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHh
Q 011249 4 KYLVPRSKTFNQLKQVHSYLLKTLTKP-HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVL 80 (490)
Q Consensus 4 ~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 80 (490)
+..+-..|+++.|...++...+ .. .++. .+..+...|.+.|+ +++|.+.|+++. .|+....|..+...+..
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~---~~p~~~~--~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIE---LDPNEPV--FYSNISACYISTGD-LEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHH---HCTTCHH--HHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHh---hCCCCcH--HHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 3445567888889988888887 55 7888 99999999999999 999999999985 56665789999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCCC------HhHHHHH
Q 011249 81 HAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERN------VISWSAM 154 (490)
Q Consensus 81 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l 154 (490)
.|++++|...|+.+ .. .|+.... .+. .+...+...+|...++.+...+ .......
T Consensus 106 ~g~~~~A~~~~~~~-~~--~~~~~~~--~~~--------------~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 166 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-SL--NGDFDGA--SIE--------------PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS 166 (537)
T ss_dssp HTCHHHHHHHHHHH-C-----------------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH
T ss_pred cCCHHHHHHHHHHH-hc--CCCCChH--HHH--------------HHHHHHHHHHHHHHHHHHHHhCccccccccchHhH
Confidence 99999999999643 32 3332221 111 1344566778999998887521 1122334
Q ss_pred HHHHHhCCChHHHHHHHHHhccCCch---hHHHHHHHHHh--------cCChhHHHHHHhhcCC--CC--------HHhH
Q 011249 155 VAGYANCGNMKAAKEFYDRMTEKNSV---TWVAMIAGYGK--------CGEVREAKKVFDEISE--PD--------ASCW 213 (490)
Q Consensus 155 ~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~A~~~~~~~~~--~~--------~~~~ 213 (490)
+..+....+.+.+...+.+....+.. ....+...+.. .|++++|..+|+++.+ |+ ..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 246 (537)
T 3fp2_A 167 LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALAL 246 (537)
T ss_dssp HHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
T ss_pred HHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHH
Confidence 55566677777777776666554433 33333333322 2578999999998866 33 2357
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc
Q 011249 214 AAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKC 293 (490)
Q Consensus 214 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 293 (490)
..+...+...|++++|+..++++.+. .|+...+..+..++...|++++|...++.+.+.. +.+..++..+...+...
T Consensus 247 ~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 247 CYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhc
Confidence 77788899999999999999999986 4557888899999999999999999999998876 66788899999999999
Q ss_pred CChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHH
Q 011249 294 GYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFE 370 (490)
Q Consensus 294 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 370 (490)
|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++
T Consensus 324 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999998865 356789999999999999999999999999852 3345688888999999999999999999
Q ss_pred HHHHHcCCCCC----chHHHHHHHHHhhc----------CChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHH
Q 011249 371 LMTRVFGIKPL----TEHLTCMVDLLGRS----------GQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGE 434 (490)
Q Consensus 371 ~~~~~~~~~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 434 (490)
++.+.....++ ...+..+..++... |++++|...|+++. .+.+...+..+...+...|++++|.
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 98874211121 22244456777777 99999999999877 4556788999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHH
Q 011249 435 IAARHLLELGPEKTGNSAL 453 (490)
Q Consensus 435 ~~~~~~~~~~p~~~~~~~~ 453 (490)
+.|+++++..|+++.....
T Consensus 483 ~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 483 ELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHH
Confidence 9999999999998776543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=7.2e-22 Score=183.20 Aligned_cols=310 Identities=9% Similarity=0.043 Sum_probs=229.5
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHhcc--C-CchhHHHHHHHHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHH
Q 011249 147 NVISWSAMVAGYANCGNMKAAKEFYDRMTE--K-NSVTWVAMIAGYGKCGEVREAKKVFDEISE---PDASCWAAMTVCY 220 (490)
Q Consensus 147 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 220 (490)
|+..+..+...+...|++++|+..|+++.+ | +..++..++..+...|++++|...|+++.+ .+...+..+..++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 345666677777777888888888877764 2 556777777777778888888887777654 3556777788888
Q ss_pred HhcCChHHHHHHHHHHHHcCcc--cChhhHHHH------------HHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 011249 221 VQNGYAKAAIEMYKVMRQENVR--ISEVAMVGA------------ISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNAL 286 (490)
Q Consensus 221 ~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 286 (490)
...|++++|+..|+++.+.... .+...+..+ ...+...|++++|...++.+.+.. +.+...+..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 8888888888888887765320 123333333 467778888888888888887775 5667778888
Q ss_pred HHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHH------------
Q 011249 287 IHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPN-QVTFI------------ 350 (490)
Q Consensus 287 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~------------ 350 (490)
...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+. .|+ ...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHH
Confidence 8888888888888888887765 36678888888888888999998888888874 333 22222
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCCCCCc----hHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHH
Q 011249 351 GVLTACSHGGLVEDGCKQFELMTRVFGIKPLT----EHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGAC 424 (490)
Q Consensus 351 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 424 (490)
.+...+...|++++|...++++.+. . +.+. ..+..+..++...|++++|.+.+++.. .+.+..++..+...+
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKT-E-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-C-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 2255677889999999999888874 2 2222 234457788888999999999888776 444677888888888
Q ss_pred hhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 011249 425 KVHVNAELGEIAARHLLELGPEKTGNSALLANIYASM 461 (490)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 461 (490)
...|++++|.+.++++++.+|+++.++..+..+....
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 8899999999999999999998888888887766544
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=1.2e-21 Score=181.58 Aligned_cols=297 Identities=12% Similarity=0.020 Sum_probs=251.3
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHH
Q 011249 178 NSVTWVAMIAGYGKCGEVREAKKVFDEISE---PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISA 254 (490)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 254 (490)
|+..+..++..+...|++++|+..|+++.+ .+...+..+..++...|++++|+..++++.+.. +.+...+..+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 345677889999999999999999998865 567889999999999999999999999999864 2256788999999
Q ss_pred HhccCChHHHHHHHHHHHhcCCC---CchhHHHHH------------HHHHHhcCChHHHHHHHhcccC---CChhHHHH
Q 011249 255 CTQLGDVEMAAILAKHVDEGCCD---RTNYVSNAL------------IHMHSKCGYLDLAWREFSRIKN---KDVISYSS 316 (490)
Q Consensus 255 ~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ 316 (490)
+...|++++|...++.+.+.. + .+...+..+ ...+...|++++|...++++.+ .+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 999999999999999998875 3 345555544 5788999999999999998865 46788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHH----------
Q 011249 317 MITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLT---------- 386 (490)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------- 386 (490)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999852 346678889999999999999999999999874 233333332
Q ss_pred --HHHHHHhhcCChHHHHHHHHhcc-CCCC-h----hhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 011249 387 --CMVDLLGRSGQLEKAHSLIMDYK-DFCD-A----GTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIY 458 (490)
Q Consensus 387 --~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 458 (490)
.++..+.+.|++++|.+.++++. ..|+ . ..+..+...+...|++++|++.++++.+..|+++.++..++.++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 23667899999999999998876 2333 3 23455778899999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHHhhhccc
Q 011249 459 ASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 459 ~~~g~~~~A~~~~~~~~~~~~ 479 (490)
...|++++|.+.++++.+..+
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999987644
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.4e-20 Score=172.33 Aligned_cols=285 Identities=13% Similarity=-0.023 Sum_probs=203.6
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHH
Q 011249 178 NSVTWVAMIAGYGKCGEVREAKKVFDEISE---PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISA 254 (490)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 254 (490)
+...+..++..+...|++++|+++|+++.+ .+...+..++.++...|++++|..+++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 444555555555555666666665555543 233455556666666677777777777766543 2245566666666
Q ss_pred HhccC-ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHH
Q 011249 255 CTQLG-DVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEA 330 (490)
Q Consensus 255 ~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 330 (490)
+...| ++++|...++.+.+.. +.+...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence 66777 6777777777776654 44556666777777777777777777776654 2355666677788888888888
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcC-------CCCCchHHHHHHHHHhhcCChHHHHH
Q 011249 331 LDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFG-------IKPLTEHLTCMVDLLGRSGQLEKAHS 403 (490)
Q Consensus 331 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~ 403 (490)
...++++.+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+..++...|++++|.+
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888887742 33456777788888888888888888888877421 14446788889999999999999999
Q ss_pred HHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhcCCcc
Q 011249 404 LIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIY-ASMGKWK 465 (490)
Q Consensus 404 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 465 (490)
.+++.. .+.+...+..+...+...|++++|.+.++++++..|+++..+..++.++ ...|+.+
T Consensus 258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 998876 4456778889999999999999999999999999999999999999888 4555543
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=2.7e-21 Score=180.13 Aligned_cols=259 Identities=10% Similarity=-0.093 Sum_probs=180.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 011249 212 CWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHS 291 (490)
Q Consensus 212 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 291 (490)
.+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..++.+|.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444444555555555555555544432 1233444444444555555555555555544443 334444444555555
Q ss_pred hcCChHHHHHHHhcccC--C-ChhH----------------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHH
Q 011249 292 KCGYLDLAWREFSRIKN--K-DVIS----------------YSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIG 351 (490)
Q Consensus 292 ~~~~~~~A~~~~~~~~~--~-~~~~----------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ 351 (490)
..|++++|...|+++.. | +... +..+...+ ..|++++|...++++.+..... +..++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 55555555555544432 1 1111 11233333 8899999999999999853221 4778889
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCC
Q 011249 352 VLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVN 429 (490)
Q Consensus 352 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 429 (490)
+...+...|++++|...++++.+. .+.+...+..++.++...|++++|...|+++. .+.+...+..+..++...|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 999999999999999999999883 45567888999999999999999999998876 45567899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhcCCcchHHHHHHHhh
Q 011249 430 AELGEIAARHLLELGPEK-----------TGNSALLANIYASMGKWKDSEIVKMMIS 475 (490)
Q Consensus 430 ~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (490)
+++|...++++++..|++ +.++..++.+|...|++++|..++++..
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 999999999999988887 7899999999999999999999987544
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=1.1e-19 Score=175.88 Aligned_cols=375 Identities=8% Similarity=-0.030 Sum_probs=291.6
Q ss_pred HHHhccCCCCCCceehHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHh--
Q 011249 56 RQVFDQIPKCKTQFLWTSLIRNHVL----HAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTK-- 129 (490)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~-- 129 (490)
...+++...++....+..|...|.. .+++++|+..|++..+.|. ...+.. +...|..
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~--------------Lg~~y~~g~ 89 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGY---TPAEYV--------------LGLRYMNGE 89 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHH--------------HHHHHHHTS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHH--------------HHHHHHcCC
Confidence 3444443333333677777777777 7888888888888877642 222222 2223566
Q ss_pred --cCCHHHHHHHHhhcCC-CCHhHHHHHHHHHHh----CCChHHHHHHHHHhccC-CchhHHHHHHHHHh----cCChhH
Q 011249 130 --IGLMDDAQRLFDSMAE-RNVISWSAMVAGYAN----CGNMKAAKEFYDRMTEK-NSVTWVAMIAGYGK----CGEVRE 197 (490)
Q Consensus 130 --~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~ 197 (490)
.++.++|...|++..+ .++..+..|...|.. .+++++|++.|++..+. ++..+..+...|.. .+++++
T Consensus 90 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 90 GVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 7888889888888766 366777778888887 78899999999888765 67788888888887 788999
Q ss_pred HHHHHhhcCC-CCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhc----cCChHHHHHHH
Q 011249 198 AKKVFDEISE-PDASCWAAMTVCYVQ----NGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQ----LGDVEMAAILA 268 (490)
Q Consensus 198 A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~ 268 (490)
|++.|++..+ .++..+..+...|.. .+++++|+++|++..+.| +...+..+...+.. .+++++|..++
T Consensus 170 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 170 AREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999987654 677888888888888 889999999999988765 45667777777765 78999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcccC-CChhHHHHHHHHHHhc-----CChHHHHHHHHHHH
Q 011249 269 KHVDEGCCDRTNYVSNALIHMHSK----CGYLDLAWREFSRIKN-KDVISYSSMITAFADH-----GKSQEALDMFLKMR 338 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~ 338 (490)
+...+.+ ++..+..+..+|.. .+++++|..+|++..+ .++..+..+...|... +++++|...|++..
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 9988765 34556667777777 8899999999998876 4677788888888877 89999999999999
Q ss_pred HcCCCCcHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhh----cCChHHHHHHHHhccCC
Q 011249 339 NEGIEPNQVTFIGVLTACSHGG---LVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGR----SGQLEKAHSLIMDYKDF 411 (490)
Q Consensus 339 ~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 411 (490)
+.| +...+..+...|...| +.++|.+.|++..+. .++..+..+..+|.. .+++++|.+.|++....
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 864 3456666777776656 788999999999873 456778888888888 89999999999988755
Q ss_pred CChhhHHHHHHHHhh----hCChHHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 011249 412 CDAGTWGALLGACKV----HVNAELGEIAARHLLELGPE---KTGNSALLANIYAS 460 (490)
Q Consensus 412 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 460 (490)
.++..+..+...|.. .+++++|...|+++.+.+|+ ++.+...++.++..
T Consensus 397 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 397 GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 678888889888887 89999999999999999854 77777777766554
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=3.2e-20 Score=169.96 Aligned_cols=267 Identities=10% Similarity=-0.002 Sum_probs=234.0
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 011249 208 PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALI 287 (490)
Q Consensus 208 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 287 (490)
.+...+..++..+...|++++|+++++++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 566678889999999999999999999999764 2355677778888999999999999999998876 66788889999
Q ss_pred HHHHhcC-ChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChH
Q 011249 288 HMHSKCG-YLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVE 363 (490)
Q Consensus 288 ~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 363 (490)
..+...| ++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998876 356789999999999999999999999999853 223456777888999999999
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccC-----------CCChhhHHHHHHHHhhhCChHH
Q 011249 364 DGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKD-----------FCDAGTWGALLGACKVHVNAEL 432 (490)
Q Consensus 364 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~ 432 (490)
+|...++++.+ ..+.+...+..++..+...|++++|...+++... +....++..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999987 4556678889999999999999999999987761 3345689999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 433 GEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 433 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
|...++++.+..|+++.++..++.++.+.|++++|.+.++++.+..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999876543
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=2e-18 Score=167.04 Aligned_cols=335 Identities=14% Similarity=0.032 Sum_probs=288.0
Q ss_pred cCCHHHHHHHHhhcCC-CCHhHHHHHHHHHHh----CCChHHHHHHHHHhccC-CchhHHHHHHHHHh----cCChhHHH
Q 011249 130 IGLMDDAQRLFDSMAE-RNVISWSAMVAGYAN----CGNMKAAKEFYDRMTEK-NSVTWVAMIAGYGK----CGEVREAK 199 (490)
Q Consensus 130 ~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~ 199 (490)
.+++++|+..|++..+ .+...+..|...|.. .+++++|++.|++..+. ++..+..+...|.. .+++++|+
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 135 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESV 135 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 7999999999998876 477888999999998 99999999999999876 77888889999988 88999999
Q ss_pred HHHhhcCC-CCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhc----cCChHHHHHHHHH
Q 011249 200 KVFDEISE-PDASCWAAMTVCYVQ----NGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQ----LGDVEMAAILAKH 270 (490)
Q Consensus 200 ~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 270 (490)
+.|++..+ .++..+..|...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|..+|++
T Consensus 136 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 212 (490)
T 2xm6_A 136 KWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRK 212 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 99998765 577888889999988 889999999999998865 66778888888877 8999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcccC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 011249 271 VDEGCCDRTNYVSNALIHMHSK----CGYLDLAWREFSRIKN-KDVISYSSMITAFAD----HGKSQEALDMFLKMRNEG 341 (490)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 341 (490)
..+.+ ++..+..+...|.. .+++++|..+|++..+ .++..+..+...|.. .+++++|...|++..+.|
T Consensus 213 a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~ 289 (490)
T 2xm6_A 213 SATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG 289 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC
Confidence 98875 45667778888886 7899999999999876 567788888888888 899999999999998754
Q ss_pred CCCcHHHHHHHHHHhcCC-----CChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcC---ChHHHHHHHHhccCCCC
Q 011249 342 IEPNQVTFIGVLTACSHG-----GLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSG---QLEKAHSLIMDYKDFCD 413 (490)
Q Consensus 342 ~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 413 (490)
+...+..+...|... ++.++|...+++..+. + +...+..+...|...| ++++|.++|++.....+
T Consensus 290 ---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~ 362 (490)
T 2xm6_A 290 ---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGE 362 (490)
T ss_dssp ---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTC
T ss_pred ---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCC
Confidence 445666677777766 8999999999999883 3 4567777888888766 88999999998875678
Q ss_pred hhhHHHHHHHHhh----hCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCcchHHHHHHHhhhccc
Q 011249 414 AGTWGALLGACKV----HVNAELGEIAARHLLELGPEKTGNSALLANIYAS----MGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 414 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 479 (490)
+..+..+...+.. .+++++|.+.|+++.+.+ ++.++..|+.+|.. .+++++|...+++..+.+.
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8899999999988 899999999999999864 68899999999998 8999999999999988874
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=5.5e-18 Score=165.65 Aligned_cols=409 Identities=11% Similarity=0.015 Sum_probs=269.0
Q ss_pred CCCchhHhHHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhH
Q 011249 29 KPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTF 106 (490)
Q Consensus 29 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 106 (490)
.|.+.. .|..++.. .+.|+ +++|+.+|+++. .|+....|..++..+.+.|++++|..+|+++.+. .|+...|
T Consensus 9 ~P~~~~--~w~~l~~~-~~~~~-~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw 82 (530)
T 2ooe_A 9 NPYDLD--AWSILIRE-AQNQP-IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLW 82 (530)
T ss_dssp CTTCHH--HHHHHHHH-HHSSC-HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHH
T ss_pred CCCCHH--HHHHHHHH-HHhCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHH
Confidence 557788 89999984 77888 999999999885 5666567899999999999999999999998886 4666555
Q ss_pred HHHHHHhcCCCChHHHHHHHHHhcCCHHHHHH----HHhhcCC------CCHhHHHHHHHHHHh---------CCChHHH
Q 011249 107 SSVLNACARVPSLLEAVICGYTKIGLMDDAQR----LFDSMAE------RNVISWSAMVAGYAN---------CGNMKAA 167 (490)
Q Consensus 107 ~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~~------~~~~~~~~l~~~~~~---------~~~~~~a 167 (490)
...+.. .....|+.+.|.+ +|+.... ++...|...+....+ .|+++.|
T Consensus 83 ~~~~~~-------------~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a 149 (530)
T 2ooe_A 83 KCYLSY-------------VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAV 149 (530)
T ss_dssp HHHHHH-------------HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHH
T ss_pred HHHHHH-------------HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHH
Confidence 544432 1234577776665 6665532 355677777766554 5778888
Q ss_pred HHHHHHhcc-CCc---hhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH------
Q 011249 168 KEFYDRMTE-KNS---VTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMR------ 237 (490)
Q Consensus 168 ~~~~~~~~~-~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------ 237 (490)
..+|++..+ |+. ..|..........|. ..+..++. ...+++..|..++++..
T Consensus 150 ~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l 211 (530)
T 2ooe_A 150 RRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGL 211 (530)
T ss_dssp HHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHh
Confidence 888888775 221 122221111100110 00111110 12344555665555422
Q ss_pred HcC---cccC--------hhhHHHHHHHHhc----cCCh----HHHHHHHHHHHhcCCCCchhHHHHHHHHHHh------
Q 011249 238 QEN---VRIS--------EVAMVGAISACTQ----LGDV----EMAAILAKHVDEGCCDRTNYVSNALIHMHSK------ 292 (490)
Q Consensus 238 ~~~---~~p~--------~~~~~~l~~~~~~----~g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 292 (490)
+.. +.|+ ...|...+..... .++. ..+..+|+++.... |.++..|..++..+.+
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 212 DRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhh
Confidence 111 1222 1233333322211 1232 36667788877764 5667777777777765
Q ss_pred -cCChH-------HHHHHHhcccC---C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-H-HHHHHHHHHhcC
Q 011249 293 -CGYLD-------LAWREFSRIKN---K-DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPN-Q-VTFIGVLTACSH 358 (490)
Q Consensus 293 -~~~~~-------~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~ 358 (490)
.|+++ +|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~ 368 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARR 368 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHH
Confidence 68876 78888887764 3 4677888888888888888888888888873 554 2 467777777777
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCchHHHHHHHH-HhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHH
Q 011249 359 GGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDL-LGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEI 435 (490)
Q Consensus 359 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (490)
.|+.++|..+|++..+. .+.+...+...+.. +...|+.++|..+|++.. .+.++..|..++..+...|+.++|..
T Consensus 369 ~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~ 446 (530)
T 2ooe_A 369 AEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV 446 (530)
T ss_dssp HHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHH
Confidence 88888888888888762 22233334332222 335788888888888765 33457788888888888889999999
Q ss_pred HHHHHHhcCCCCCc----hHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 436 AARHLLELGPEKTG----NSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 436 ~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
+|++++...|.++. ++...+......|+.+.+..+.+++.+.-+
T Consensus 447 ~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 447 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99988888776665 777777777788888888888888766543
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=2.8e-20 Score=173.10 Aligned_cols=261 Identities=10% Similarity=-0.091 Sum_probs=203.4
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 011249 209 DASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIH 288 (490)
Q Consensus 209 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 288 (490)
+...+..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34457777777788888888888888877654 2356677777777888888888888888877765 556677777888
Q ss_pred HHHhcCChHHHHHHHhcccCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CcHHHHHHHHH
Q 011249 289 MHSKCGYLDLAWREFSRIKNKD-------------VISYSSMITAFADHGKSQEALDMFLKMRNEGIE-PNQVTFIGVLT 354 (490)
Q Consensus 289 ~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~ 354 (490)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|...++++.+.... ++...+..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 8888888888888887776411 223344577889999999999999999985322 15778899999
Q ss_pred HhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHH
Q 011249 355 ACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAEL 432 (490)
Q Consensus 355 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 432 (490)
.+...|++++|...++++.+. .+.+..++..++.+|...|++++|.+.|+++. .+.+..++..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999883 45568889999999999999999999998876 44567899999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCcchHHHHHHH
Q 011249 433 GEIAARHLLELGPE------------KTGNSALLANIYASMGKWKDSEIVKMM 473 (490)
Q Consensus 433 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (490)
|...++++++..|+ +..++..++.++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998876 367899999999999999999888765
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.86 E-value=2.1e-19 Score=164.01 Aligned_cols=379 Identities=9% Similarity=0.033 Sum_probs=183.5
Q ss_pred cchhhhhhchhhHHHHHHHHhhhcCCCCchhHhHHHHHHHHHhcCCCCHHHHHHHhccCCCCCCceehHHHHHHHHhcCC
Q 011249 4 KYLVPRSKTFNQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAH 83 (490)
Q Consensus 4 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 83 (490)
..|+..+|+++.|.+..+++. ++. +|..|+.++.+.|+ +++|++.|.+. ++. ..|..++..+...|+
T Consensus 10 ~~ll~~~~~ld~A~~fae~~~-------~~~--vWs~La~A~l~~g~-~~eAIdsfika--~D~-~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 10 QVLIEHIGNLDRAYEFAERCN-------EPA--VWSQLAKAQLQKGM-VKEAIDSYIKA--DDP-SSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHccCHHHHHHHHHhCC-------ChH--HHHHHHHHHHHcCC-HHHHHHHHHcC--CCH-HHHHHHHHHHHhCCC
Confidence 456777888888887777773 356 99999999999999 99999999775 455 689999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhCCC
Q 011249 84 FRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGN 163 (490)
Q Consensus 84 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 163 (490)
+++|+..++..++. .+++.+.+.++.+ |.+.|+++++.++++ .|+..+|+.++..|...|.
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~--------------Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~ 137 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFA--------------LAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKM 137 (449)
T ss_dssp ------------------------------------------------CHHHHTTTTT---CC----------------C
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHH--------------HHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCC
Confidence 99999988777664 4455666666554 788899999887775 4777899999999999999
Q ss_pred hHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCccc
Q 011249 164 MKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRI 243 (490)
Q Consensus 164 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 243 (490)
+++|...|..+ ..|..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+ ..
T Consensus 138 yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~ 205 (449)
T 1b89_A 138 YDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI-----VV 205 (449)
T ss_dssp TTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TT
T ss_pred HHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH-----Hh
Confidence 99999999988 589999999999999999999999994 8899999999999999999996655442 22
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc--CChHHHHHHHhcccC--------CChhH
Q 011249 244 SEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKC--GYLDLAWREFSRIKN--------KDVIS 313 (490)
Q Consensus 244 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~--------~~~~~ 313 (490)
.+.....++..|.+.|.+++|..+++...... +.....|+-|.-+|++- +++.+.++.|..-.. .+...
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 33445578899999999999999999998776 55667777777777754 466667777765444 25678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Q 011249 314 YSSMITAFADHGKSQEALDMFLKMRNE-GIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLL 392 (490)
Q Consensus 314 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 392 (490)
|..+...|...++++.|... |.+. ...-+...|.-++. +..+.+--.+...-.... .+...+.|+.++
T Consensus 285 w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~---kv~n~elyYkai~fyl~~-----~p~~l~~ll~~l 353 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIIT---KVANVELYYRAIQFYLEF-----KPLLLNDLLMVL 353 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHH---HCSSTHHHHHHHHHHHHH-----CGGGHHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHh---chhHHHHHHHHHHHHHhc-----CHHHHHHHHHHH
Confidence 99999999999999988774 4443 12223344444433 334433322222222221 233345555555
Q ss_pred hhcCChHHHHHHHHhc-------------cCCCChhhHHHHHHHHhhhCChHHHHHHHH
Q 011249 393 GRSGQLEKAHSLIMDY-------------KDFCDAGTWGALLGACKVHVNAELGEIAAR 438 (490)
Q Consensus 393 ~~~g~~~~A~~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (490)
...=+...+.++|++. ....+..+-.++-..+....|++.-....+
T Consensus 354 ~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 354 SPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp GGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5555555555555443 334445555566667777777776555444
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=4.2e-19 Score=171.26 Aligned_cols=335 Identities=10% Similarity=-0.017 Sum_probs=201.4
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHhcc-----------C-CchhHHHHHHHHHhcCChhHHHHHHhhcCC--------
Q 011249 148 VISWSAMVAGYANCGNMKAAKEFYDRMTE-----------K-NSVTWVAMIAGYGKCGEVREAKKVFDEISE-------- 207 (490)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------- 207 (490)
...||.|...+...|++++|++.|++..+ + ...+|+.+..+|...|++++|...+++..+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 45678888888888888888888877652 1 345677788888888888888777766532
Q ss_pred ---CCHHhHHHHHHHHHh--cCChHHHHHHHHHHHHcCcccChhhHHHHHHH---HhccCChHHHHHHHHHHHhcCCCCc
Q 011249 208 ---PDASCWAAMTVCYVQ--NGYAKAAIEMYKVMRQENVRISEVAMVGAISA---CTQLGDVEMAAILAKHVDEGCCDRT 279 (490)
Q Consensus 208 ---~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~ 279 (490)
....++..+..++.. .+++++|++.|++..+..+. ++..+..+..+ +...++.++|...+++..+.. |.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 224455555555544 34578888888887765321 33334333333 345567777777787777765 445
Q ss_pred hhHHHHHHHHHHh----cCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHH
Q 011249 280 NYVSNALIHMHSK----CGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPN-QVTFIG 351 (490)
Q Consensus 280 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ 351 (490)
..++..+...+.. .+++++|.+.+++... .+..++..+...|...|++++|...++++.+. .|+ ...+..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHH
Confidence 5555555544443 3566778877776654 35667777888888888888888888888774 443 345555
Q ss_pred HHHHhcCC-------------------CChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CC
Q 011249 352 VLTACSHG-------------------GLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DF 411 (490)
Q Consensus 352 l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 411 (490)
+..+|... +..+.|...+++..+. .+.+...+..+...|...|++++|++.|++.. ..
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 54443211 2345667777776662 34456667778888888888888888887665 23
Q ss_pred CChh----hHHHHHH-HHhhhCChHHHHHHHHHHHh------------------------cCCCCCchHHHHHHHHHhcC
Q 011249 412 CDAG----TWGALLG-ACKVHVNAELGEIAARHLLE------------------------LGPEKTGNSALLANIYASMG 462 (490)
Q Consensus 412 ~~~~----~~~~l~~-~~~~~g~~~~a~~~~~~~~~------------------------~~p~~~~~~~~l~~~~~~~g 462 (490)
|+.. .+..+.. .....|++++|+..|+++++ .+|+++.++..|+.+|...|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g 444 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE 444 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3322 2233332 23456778888777777654 46778899999999999999
Q ss_pred CcchHHHHHHHhhhcccccCCCcccc
Q 011249 463 KWKDSEIVKMMISETEKKKSPGCSWI 488 (490)
Q Consensus 463 ~~~~A~~~~~~~~~~~~~~~~~~~~~ 488 (490)
++++|++.|++..+.+.......+|+
T Consensus 445 ~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 445 KMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HCC-----------------------
T ss_pred CHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 99999999999999988887888885
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=4.1e-18 Score=166.59 Aligned_cols=396 Identities=11% Similarity=0.065 Sum_probs=271.8
Q ss_pred hhhchhhHHHHHHHHhhhcCCC-CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHH-HhcCCh
Q 011249 9 RSKTFNQLKQVHSYLLKTLTKP-HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNH-VLHAHF 84 (490)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~-~~~g~~ 84 (490)
..|+.+.+..++++..+ .. .+.. +|..++..+.+.|+ +++|+++|++.. .|+. ..|...+... ...|+.
T Consensus 24 ~~~~~~~a~~~~e~al~---~~P~~~~--~w~~~~~~~~~~~~-~~~a~~~~~ral~~~p~~-~lw~~~~~~~~~~~~~~ 96 (530)
T 2ooe_A 24 QNQPIDKARKTYERLVA---QFPSSGR--FWKLYIEAEIKAKN-YDKVEKLFQRCLMKVLHI-DLWKCYLSYVRETKGKL 96 (530)
T ss_dssp HSSCHHHHHHHHHHHHT---TCTTCHH--HHHHHHHHHHHTTC-HHHHHHHHHHHTTTCCCH-HHHHHHHHHHHHHTTTS
T ss_pred HhCCHHHHHHHHHHHHH---HCCCCHH--HHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHccch
Confidence 35788889999999887 55 7778 99999999999999 999999999986 4655 5677776533 456888
Q ss_pred hHHHH----HHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHh---------cCCHHHHHHHHhhcCC-CCH--
Q 011249 85 RQSIL----LYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTK---------IGLMDDAQRLFDSMAE-RNV-- 148 (490)
Q Consensus 85 ~~A~~----~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~-~~~-- 148 (490)
+.|.+ +|+..... +..+........ ..+....+ .|+++.|+.+|++..+ |+.
T Consensus 97 ~~a~~~~~~~~~~al~~-~g~~~~~~~~w~-----------~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 97 PSYKEKMAQAYDFALDK-IGMEIMSYQIWV-----------DYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp TTHHHHHHHHHHHHHHH-TTTSTTCHHHHH-----------HHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred hhHHHHHHHHHHHHHHH-CCCCcccHHHHH-----------HHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 87766 55555443 223333322222 22333332 6899999999999886 432
Q ss_pred -hHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhh----------cC---CCC-----
Q 011249 149 -ISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDE----------IS---EPD----- 209 (490)
Q Consensus 149 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----------~~---~~~----- 209 (490)
..|..........|. ..+..++.. +.++++.|..++.. .. .|+
T Consensus 165 ~~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 233332221111110 111111110 12233344433322 11 122
Q ss_pred ---HHhHHHHHHHHHhc----CCh----HHHHHHHHHHHHcCcccChhhHHHHHHHHhc-------cCChH-------HH
Q 011249 210 ---ASCWAAMTVCYVQN----GYA----KAAIEMYKVMRQENVRISEVAMVGAISACTQ-------LGDVE-------MA 264 (490)
Q Consensus 210 ---~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~g~~~-------~a 264 (490)
...|...+...... ++. +++..+|++..... +-+...|...+..+.+ .|+++ +|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 24555555443332 232 47788899988753 3356777777777764 79987 89
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--C-Ch-hHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011249 265 AILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--K-DV-ISYSSMITAFADHGKSQEALDMFLKMRNE 340 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (490)
..++++..+.-.|.+...+..++..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|++++|..+|++..+.
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999998743366788899999999999999999999998875 3 33 47888999899999999999999999975
Q ss_pred CCCCc-HHHHHHHHHH-hcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCC-C---
Q 011249 341 GIEPN-QVTFIGVLTA-CSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFC-D--- 413 (490)
Q Consensus 341 ~~~p~-~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~--- 413 (490)
.|+ ...+...+.. +...|+.++|..+|++..+. .+.++..+..++..+.+.|+.++|..+|++.. ..| +
T Consensus 386 --~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 386 --ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp --TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred --cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 332 2333322222 33589999999999999884 34567888999999999999999999998876 212 2
Q ss_pred -hhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 414 -AGTWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 414 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
...|...+......|+.+.+..+.+++.+..|+
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 337888888888899999999999999998884
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=3.8e-17 Score=165.93 Aligned_cols=369 Identities=13% Similarity=0.099 Sum_probs=272.7
Q ss_pred eehHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHhhHHHHHHHhcCC--CChH-----------HHHHHHHHhcCCH
Q 011249 69 FLWTSLIRNHVLHAHFRQSILLYAKMHRLGV--LTSGFTFSSVLNACARV--PSLL-----------EAVICGYTKIGLM 133 (490)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~--~~~~-----------~~l~~~~~~~g~~ 133 (490)
.--...+.+|+..|.+.+|+++|++..-.+- .-+...-+.++..-.+. ++.. ..+...+...|.+
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence 3345667777788888888888888773311 01112222233222111 1111 3356678889999
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhH
Q 011249 134 DDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCW 213 (490)
Q Consensus 134 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 213 (490)
++|..+|++... .....+.++. ..+++++|.++.++. .++.+|..++.++...|++++|++.|.+. .|...|
T Consensus 1066 EEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say 1137 (1630)
T 1xi4_A 1066 EEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSY 1137 (1630)
T ss_pred HHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHH
Confidence 999999999752 2222233322 678899999998876 45778889999999999999999999765 677888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc
Q 011249 214 AAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKC 293 (490)
Q Consensus 214 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 293 (490)
..++.++.+.|++++|++.|...++.. +++...+.++.+|++.+++++...+. + .++...+..+...|...
T Consensus 1138 ~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~e 1208 (1630)
T 1xi4_A 1138 MEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDE 1208 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhc
Confidence 889999999999999999999887754 33333445888899998888644442 2 34556666799999999
Q ss_pred CChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 011249 294 GYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMT 373 (490)
Q Consensus 294 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 373 (490)
|++++|..+|..+ ..|..++..|.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+
T Consensus 1209 g~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I- 1276 (1630)
T 1xi4_A 1209 KMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI- 1276 (1630)
T ss_pred CCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-
Confidence 9999999999985 48999999999999999999999876 35688888999999999999888766543
Q ss_pred HHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhh--hCChHHHHHHHHHHHhcCC----
Q 011249 374 RVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKV--HVNAELGEIAARHLLELGP---- 445 (490)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~p---- 445 (490)
..++..+..++..|.+.|.+++|+.+++... .+.....|.-+..++.+ .++..++.+.|..-..+.|
T Consensus 1277 -----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~ 1351 (1630)
T 1xi4_A 1277 -----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA 1351 (1630)
T ss_pred -----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHH
Confidence 3466677889999999999999999998776 33344466666666644 4566667777776666555
Q ss_pred -CCCchHHHHHHHHHhcCCcchHHHHH
Q 011249 446 -EKTGNSALLANIYASMGKWKDSEIVK 471 (490)
Q Consensus 446 -~~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (490)
+++..|..++..|.+.|+++.|...+
T Consensus 1352 ~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1352 AEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 67888999999999999999998543
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=3.4e-18 Score=152.78 Aligned_cols=269 Identities=9% Similarity=-0.026 Sum_probs=210.5
Q ss_pred HHHHhcCChhHHHHHHhhcCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChH
Q 011249 187 AGYGKCGEVREAKKVFDEISEPD----ASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVE 262 (490)
Q Consensus 187 ~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 262 (490)
+-....|+++.|+..++.....+ ......+.++|...|+++.|+..++. .-.|+..++..+...+...|+.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 44556788888888887766532 23445677888888998888876644 13556778888888888888999
Q ss_pred HHHHHHHHHHhcCC-CCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011249 263 MAAILAKHVDEGCC-DRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEG 341 (490)
Q Consensus 263 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 341 (490)
+|.+.++.+...+. |.++..+..+..++...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 99999998877653 44666777788899999999999999998 567788999999999999999999999999985
Q ss_pred CCCcHHHH---HHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhh
Q 011249 342 IEPNQVTF---IGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGT 416 (490)
Q Consensus 342 ~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 416 (490)
.|+.... ...+..+...|++++|..+|+++.+. .+.++..++.+..++.+.|++++|.+.|+++. .+.++.+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4554311 22334455679999999999999984 56778889999999999999999999998876 5557789
Q ss_pred HHHHHHHHhhhCChHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHH
Q 011249 417 WGALLGACKVHVNAEL-GEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEI 469 (490)
Q Consensus 417 ~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 469 (490)
+..++..+...|+.++ +.++++++++.+|+++.+.. ...+.+.++++..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHH
Confidence 9999999999999875 67899999999999886543 3344444444433
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=1.1e-20 Score=172.45 Aligned_cols=304 Identities=12% Similarity=0.073 Sum_probs=148.5
Q ss_pred HHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhcC
Q 011249 127 YTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEIS 206 (490)
Q Consensus 127 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 206 (490)
..+.|++++|.+.++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|++.++...
T Consensus 13 l~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34668899999999999555 59999999999999999999999764 677799999999999999999999888776
Q ss_pred C--CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHH
Q 011249 207 E--PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSN 284 (490)
Q Consensus 207 ~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 284 (490)
+ +++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+ ..|.
T Consensus 89 k~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 89 KKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred HhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 5 566788999999999999999988884 367789999999999999999999999976 3688
Q ss_pred HHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHH
Q 011249 285 ALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVED 364 (490)
Q Consensus 285 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 364 (490)
.++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+ ...+.....++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHH
Confidence 89999999999999999999993 8899999999999999999996655542 2333445568889999999999
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHhh--cCChHHHHHHHHhcc-CCC------ChhhHHHHHHHHhhhCChHHHHH
Q 011249 365 GCKQFELMTRVFGIKPLTEHLTCMVDLLGR--SGQLEKAHSLIMDYK-DFC------DAGTWGALLGACKVHVNAELGEI 435 (490)
Q Consensus 365 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~-~~~------~~~~~~~l~~~~~~~g~~~~a~~ 435 (490)
|..+++.... .-+-....|+.+..+|++ -|+..+.++.|..-. .+| +...|..+...|...++++.|..
T Consensus 226 ai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 226 LITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 9999999875 224446677777777765 456667777664333 222 57789999999999999999987
Q ss_pred HHHHHHhc------------CCCCCchHHHHHHHHH
Q 011249 436 AARHLLEL------------GPEKTGNSALLANIYA 459 (490)
Q Consensus 436 ~~~~~~~~------------~p~~~~~~~~l~~~~~ 459 (490)
..-+-... .+.+..+|...+..|.
T Consensus 304 tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 304 TMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 55443322 4566777766666665
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=1.8e-19 Score=167.76 Aligned_cols=277 Identities=10% Similarity=0.008 Sum_probs=185.9
Q ss_pred hCCChHHHHH-HHHHhccC-------CchhHHHHHHHHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHHHhcCChHH
Q 011249 160 NCGNMKAAKE-FYDRMTEK-------NSVTWVAMIAGYGKCGEVREAKKVFDEISE---PDASCWAAMTVCYVQNGYAKA 228 (490)
Q Consensus 160 ~~~~~~~a~~-~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 228 (490)
..|++++|+. .|++.... +...+..++..+...|++++|...|+++.+ .+...+..+..++...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3456666665 55554421 234455666666666666666666666543 345566666666666666666
Q ss_pred HHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHH----------------HHHHHHHh
Q 011249 229 AIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSN----------------ALIHMHSK 292 (490)
Q Consensus 229 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~ 292 (490)
|++.|+++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+...+. .+...+ .
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 193 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-S 193 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHH-H
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-h
Confidence 666666666553 2245566666666666666666666666666554 22222111 233333 7
Q ss_pred cCChHHHHHHHhcccC--C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHH
Q 011249 293 CGYLDLAWREFSRIKN--K---DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCK 367 (490)
Q Consensus 293 ~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 367 (490)
.|++++|...|+++.+ | +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7888888888887764 3 46778888888889999999999999888752 3346688888888888999999999
Q ss_pred HHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCC-----------hhhHHHHHHHHhhhCChHHHH
Q 011249 368 QFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCD-----------AGTWGALLGACKVHVNAELGE 434 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~-----------~~~~~~l~~~~~~~g~~~~a~ 434 (490)
.++++.+. .+.+...+..+..+|.+.|++++|...|+++. .+.+ ..+|..+..++...|++++|.
T Consensus 273 ~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 273 AYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99998873 34557788888899999999999999987765 1112 578888999999999999999
Q ss_pred HHHHHHHh
Q 011249 435 IAARHLLE 442 (490)
Q Consensus 435 ~~~~~~~~ 442 (490)
.++++.++
T Consensus 351 ~~~~~~l~ 358 (368)
T 1fch_A 351 AADARDLS 358 (368)
T ss_dssp HHHTTCHH
T ss_pred HhHHHHHH
Confidence 88876654
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=2.1e-19 Score=164.29 Aligned_cols=261 Identities=8% Similarity=-0.084 Sum_probs=193.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 011249 212 CWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHS 291 (490)
Q Consensus 212 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 291 (490)
.+..+...+...|++++|+.+|+++.+... .+...+..+..++...|++++|...++++.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 445555666666666666666666655432 244555556666666666666666666665554 445555666666666
Q ss_pred hcCChHHHHHHHhcccC--C-ChhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 011249 292 KCGYLDLAWREFSRIKN--K-DVISYSSM--------------IT-AFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVL 353 (490)
Q Consensus 292 ~~~~~~~A~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 353 (490)
..|++++|...++++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 66666666666665543 1 11222222 22 3677889999999999998853 33667888899
Q ss_pred HHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChH
Q 011249 354 TACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAE 431 (490)
Q Consensus 354 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 431 (490)
..+...|++++|...++++.+. .+.+...+..++.++...|++++|.+.++++. .+.+...+..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999883 45567788899999999999999999998876 4456788999999999999999
Q ss_pred HHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 432 LGEIAARHLLELGPE------------KTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 432 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
+|.+.++++.+..|+ ++.++..++.++.+.|++++|..++++..+.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 999999999999998 7889999999999999999999999876544
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=3.9e-16 Score=158.72 Aligned_cols=430 Identities=13% Similarity=0.083 Sum_probs=285.7
Q ss_pred hhhhhhchhhHHHHHHHHhhhcCCC-CchhHhHHHHHHHHHhcCCCCHHHHHHH---hccC------CCCCCc-------
Q 011249 6 LVPRSKTFNQLKQVHSYLLKTLTKP-HDQYHYYAQFLIRLLQLPGDNLSYARQV---FDQI------PKCKTQ------- 68 (490)
Q Consensus 6 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~---~~~~------~~~~~~------- 68 (490)
|+..+......+-+...++.....| .++. ++|+|...|-..+++++.-+.- ++.. .+.|+-
T Consensus 845 lv~~~ekrnrLkll~p~LE~~~~~g~~~~~--~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~ 922 (1630)
T 1xi4_A 845 LVAEVEKRNRLKLLLPWLEARIHEGCEEPA--THNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYE 922 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhc
Confidence 3333333333333433333333367 8999 9999999998877656652211 1111 122220
Q ss_pred --eehHHHHHHHHhcCChhHHHHHH-HHHH----hcCCCCCHhhHHHHHHH-----hcCCCChH--HHHHHHHHhcCCHH
Q 011249 69 --FLWTSLIRNHVLHAHFRQSILLY-AKMH----RLGVLTSGFTFSSVLNA-----CARVPSLL--EAVICGYTKIGLMD 134 (490)
Q Consensus 69 --~~~~~l~~~~~~~g~~~~A~~~~-~~m~----~~g~~p~~~~~~~ll~~-----~~~~~~~~--~~l~~~~~~~g~~~ 134 (490)
..-.-||..+.+++.++.-.+.+ ++.. ..=..++...-..++.. ++...+++ ...++.|...|.+.
T Consensus 923 ~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~ 1002 (1630)
T 1xi4_A 923 RGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPN 1002 (1630)
T ss_pred ccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHH
Confidence 11334666666666554433322 2110 00011122112222221 22222222 56788899999999
Q ss_pred HHHHHHhhcCC-CC-----HhHHHHH---------------------------HHHHHhCCChHHHHHHHHHhccCCchh
Q 011249 135 DAQRLFDSMAE-RN-----VISWSAM---------------------------VAGYANCGNMKAAKEFYDRMTEKNSVT 181 (490)
Q Consensus 135 ~A~~~~~~~~~-~~-----~~~~~~l---------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 181 (490)
+|+++++++.- |+ ...-+.+ ...+...|.+++|..+|++... ....
T Consensus 1003 EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~-~~~A 1081 (1630)
T 1xi4_A 1003 ELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDV-NTSA 1081 (1630)
T ss_pred HHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCC-HHHH
Confidence 99999999873 22 2233333 3445566777777777777631 1111
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCCh
Q 011249 182 WVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDV 261 (490)
Q Consensus 182 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 261 (490)
.+.+ +...+++++|.++.++. .++.+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++
T Consensus 1082 ~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGky 1150 (1630)
T 1xi4_A 1082 VQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNW 1150 (1630)
T ss_pred HHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCH
Confidence 1222 22667777777777766 34677888999999999999999988663 3677888899999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011249 262 EMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEG 341 (490)
Q Consensus 262 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 341 (490)
++|.+++....+.. +++...+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|..+
T Consensus 1151 EEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---- 1221 (1630)
T 1xi4_A 1151 EELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 1221 (1630)
T ss_pred HHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Confidence 99999998877765 33333345888888888888644443 3456677778888899999999999999874
Q ss_pred CCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHHHH
Q 011249 342 IEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALL 421 (490)
Q Consensus 342 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 421 (490)
..|..++.++.+.|++++|.+.+++.. +..+|..+..+|...|++..|......+. .++..+..++
T Consensus 1222 -----~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli 1287 (1630)
T 1xi4_A 1222 -----SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELI 1287 (1630)
T ss_pred -----hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHH
Confidence 368888888889999999998888772 45788888888889999999988776543 4566677888
Q ss_pred HHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc--CCcchHHHHHH
Q 011249 422 GACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASM--GKWKDSEIVKM 472 (490)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 472 (490)
..|...|.+++|+.+++.++.++|.+..++..|+.+|.+- ++..++.++|.
T Consensus 1288 ~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1288 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999998888777764 45666666665
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.8e-17 Score=159.82 Aligned_cols=362 Identities=11% Similarity=-0.003 Sum_probs=237.4
Q ss_pred CCceehHHHHHHHHhcCChhHHHHHHHHHHhc-----CC--CCC-HhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHH
Q 011249 66 KTQFLWTSLIRNHVLHAHFRQSILLYAKMHRL-----GV--LTS-GFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQ 137 (490)
Q Consensus 66 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~--~p~-~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~ 137 (490)
.....||.|...+...|++++|++.|++..+. +. .|+ ..+|+.+ ...|...|++++|.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nl--------------a~~y~~~g~~~~A~ 114 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNY--------------AWVYYHMGRLSDVQ 114 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHH--------------HHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHH--------------HHHHHHcCChHHHH
Confidence 33367999999999999999999999987542 11 222 2344433 33588899999999
Q ss_pred HHHhhcCC-----------CCHhHHHHHHHHHHh--CCChHHHHHHHHHhcc--C-CchhHHHHHHH---HHhcCChhHH
Q 011249 138 RLFDSMAE-----------RNVISWSAMVAGYAN--CGNMKAAKEFYDRMTE--K-NSVTWVAMIAG---YGKCGEVREA 198 (490)
Q Consensus 138 ~~~~~~~~-----------~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~A 198 (490)
..+++..+ ....++..+..++.. .+++++|+..|++..+ | ++..+..+..+ +...++.++|
T Consensus 115 ~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 115 IYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp HHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHH
Confidence 98887643 134567766666655 4579999999999885 4 45556555555 3456788889
Q ss_pred HHHHhhcCC---CCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHH
Q 011249 199 KKVFDEISE---PDASCWAAMTVCYVQ----NGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHV 271 (490)
Q Consensus 199 ~~~~~~~~~---~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 271 (490)
++.+++..+ .+...+..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...++++
T Consensus 195 l~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 195 IDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 988887654 455666666655544 467889999999988764 336678889999999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHHhc-------------------CChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHH
Q 011249 272 DEGCCDRTNYVSNALIHMHSKC-------------------GYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQE 329 (490)
Q Consensus 272 ~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 329 (490)
.+.. |.+..++..+..+|... +..+.|...|++..+ .+..++..+...+...|++++
T Consensus 274 l~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 274 LEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred HHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence 8876 55677777777666432 235667777776654 356688899999999999999
Q ss_pred HHHHHHHHHHcCCCCcHH--HHHHHHH-HhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHH
Q 011249 330 ALDMFLKMRNEGIEPNQV--TFIGVLT-ACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIM 406 (490)
Q Consensus 330 a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 406 (490)
|+..|++..+....|... .+..+.. .....|+.++|+..+++..+ +.|+....... ...+.++++
T Consensus 353 A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~ 420 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAK 420 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHH
Confidence 999999999854333322 2233332 24578999999999999876 34554332222 233444444
Q ss_pred hcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 011249 407 DYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLA 455 (490)
Q Consensus 407 ~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 455 (490)
... .+.++.+|..+..++...|++++|++.|+++++.+|.+|.+...+|
T Consensus 421 ~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 421 MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 433 4567889999999999999999999999999999999998877665
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=1.5e-18 Score=155.03 Aligned_cols=250 Identities=9% Similarity=-0.040 Sum_probs=204.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCh
Q 011249 217 TVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYL 296 (490)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 296 (490)
++-....|++..|+..+++.......+.......+.+++...|+++.|...++. . -+|+...+..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 345667899999999988765443222234556778999999999999876644 2 366778888999999999999
Q ss_pred HHHHHHHhcccC----C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHH
Q 011249 297 DLAWREFSRIKN----K-DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFEL 371 (490)
Q Consensus 297 ~~A~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 371 (490)
++|++.++++.. | ++..+..+..++...|++++|+..+++ ..+...+..++..+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998642 4 566778888999999999999999987 45677888899999999999999999999
Q ss_pred HHHHcCCCCCchHH---HHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 372 MTRVFGIKPLTEHL---TCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 372 ~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
+.+. .|+.... ..++..+...|++++|..+|+++. .+.++..++.+..++...|++++|+..++++++.+|+
T Consensus 156 ~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9884 3553221 223344455699999999999887 5667889999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCcch-HHHHHHHhhhccc
Q 011249 447 KTGNSALLANIYASMGKWKD-SEIVKMMISETEK 479 (490)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 479 (490)
++.++..++.++...|+.++ +.++++++.+..+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999986 5789998876543
No 33
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=1.2e-18 Score=162.00 Aligned_cols=234 Identities=11% Similarity=0.027 Sum_probs=199.9
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHH
Q 011249 244 SEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITA 320 (490)
Q Consensus 244 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 320 (490)
+...+..+...+.+.|++++|..+++.+.+.. |.+..++..+..+|...|++++|+..|+++.+ .+..+|..++.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568889999999999999999999999886 66788999999999999999999999998875 467899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHH-----------HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHH
Q 011249 321 FADHGKSQEALDMFLKMRNEGIEPNQV-----------TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMV 389 (490)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 389 (490)
|...|++++|...++++.+. .|+.. .+..+...+...|++++|...++++.+.....++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999884 44432 233457788999999999999999998522222678899999
Q ss_pred HHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchH
Q 011249 390 DLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDS 467 (490)
Q Consensus 390 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 467 (490)
..|...|++++|.+.|+++. .+.+..+|..+..++...|++++|+..++++++..|+++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998876 4557889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccc
Q 011249 468 EIVKMMISETEKK 480 (490)
Q Consensus 468 ~~~~~~~~~~~~~ 480 (490)
...++++.+....
T Consensus 301 ~~~~~~al~~~~~ 313 (365)
T 4eqf_A 301 VSNFLTALSLQRK 313 (365)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcc
Confidence 9999999876543
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=2.4e-18 Score=157.28 Aligned_cols=270 Identities=10% Similarity=-0.010 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHhcc--C-CchhHHHHHHHHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHHHh
Q 011249 149 ISWSAMVAGYANCGNMKAAKEFYDRMTE--K-NSVTWVAMIAGYGKCGEVREAKKVFDEISE---PDASCWAAMTVCYVQ 222 (490)
Q Consensus 149 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 222 (490)
..+..+...+...|++++|..+|+++.+ | +..++..++.++...|++++|.+.|+++.+ .+...+..+..++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 3455566667777777777777776653 2 445556666666666666666666665543 345556666666666
Q ss_pred cCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHH-HH-HHHhcCChHHHH
Q 011249 223 NGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNAL-IH-MHSKCGYLDLAW 300 (490)
Q Consensus 223 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~A~ 300 (490)
.|++++|++.++++.+.... +...+..+...+ ++......+ .. .+...|++++|.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHHH
Confidence 66666666666666654211 122222220000 000000001 11 244445555555
Q ss_pred HHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcC
Q 011249 301 REFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFG 377 (490)
Q Consensus 301 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 377 (490)
..++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-- 235 (327)
T 3cv0_A 159 TLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI-- 235 (327)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 55554433 234455555555666666666666666655531 223445555666666666666666666666552
Q ss_pred CCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCC-------------ChhhHHHHHHHHhhhCChHHHHHHHHHHHhc
Q 011249 378 IKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFC-------------DAGTWGALLGACKVHVNAELGEIAARHLLEL 443 (490)
Q Consensus 378 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (490)
.+.+...+..+..+|...|++++|.+.++++. ..| +...+..+..++...|++++|..+++++++.
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 23345555566666666666666666665544 111 3456666666666677777777666655554
Q ss_pred C
Q 011249 444 G 444 (490)
Q Consensus 444 ~ 444 (490)
.
T Consensus 316 ~ 316 (327)
T 3cv0_A 316 F 316 (327)
T ss_dssp H
T ss_pred c
Confidence 3
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.76 E-value=6.6e-17 Score=154.03 Aligned_cols=376 Identities=8% Similarity=-0.013 Sum_probs=245.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCH---HHHHHHHhhcCCCCHh
Q 011249 73 SLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLM---DDAQRLFDSMAERNVI 149 (490)
Q Consensus 73 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~ 149 (490)
.+...+.+.|++++|.++|++..+.|. |+.... +...|...|+. ++|+.+|++..+.++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~-~~A~~~----------------Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~ 70 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY-SEAQVG----------------LADIQVGTRDPAQIKQAEATYRAAADTSPR 70 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-CTGGGT----------------CC----------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC-HHHHHH----------------HHHHHHccCCCCCHHHHHHHHHHHHhCCHH
Confidence 356667788899999999988877653 222211 11124455666 8888888888877666
Q ss_pred HHHHHHHHHHhCC-----ChHHHHHHHHHhccC-CchhHHHHHHHHHhcCChhHH---HHHHhhcCC-CCHHhHHHHHHH
Q 011249 150 SWSAMVAGYANCG-----NMKAAKEFYDRMTEK-NSVTWVAMIAGYGKCGEVREA---KKVFDEISE-PDASCWAAMTVC 219 (490)
Q Consensus 150 ~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A---~~~~~~~~~-~~~~~~~~l~~~ 219 (490)
.+..+...+...+ ++++|+..|++..++ +...+..|...|...+..+++ .+.+....+ .++..+..|...
T Consensus 71 A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~ 150 (452)
T 3e4b_A 71 AQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLL 150 (452)
T ss_dssp CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777566655 778899999888876 666788888888876654443 333333322 456677788888
Q ss_pred HHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccC---ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc---
Q 011249 220 YVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLG---DVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKC--- 293 (490)
Q Consensus 220 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 293 (490)
|...+.++++......+.+.-...++..+..+...+...| +.++|...|+...+.| +++...+..+..+|...
T Consensus 151 y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 151 YRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp HHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGS
T ss_pred HHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCC
Confidence 8888866655554444333222234447778888888888 8889999999988887 56666556677777665
Q ss_pred -CChHHHHHHHhcccCCChhHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCC-----ChHH
Q 011249 294 -GYLDLAWREFSRIKNKDVISYSSMITA-F--ADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGG-----LVED 364 (490)
Q Consensus 294 -~~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~ 364 (490)
+++++|..+|++....++..+..+... + ...+++++|...|++..+.| +......+...|. .| ++++
T Consensus 230 ~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 230 TPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp SCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 788999999988874466777777776 4 46789999999999998866 5556666666665 34 8899
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHhh----cCChHHHHHHHHhccCCCChhhHHHHHHHHhh----hCChHHHHHH
Q 011249 365 GCKQFELMTRVFGIKPLTEHLTCMVDLLGR----SGQLEKAHSLIMDYKDFCDAGTWGALLGACKV----HVNAELGEIA 436 (490)
Q Consensus 365 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 436 (490)
|...|++.. +.++..+..|..+|.. ..++++|.++|++.....++.....+...|.. ..|.++|...
T Consensus 306 A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 306 AEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 999998875 3456677777777766 44899999999888766667777777777754 4589999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHH--HhcCCcchHHHHHHHhhhc
Q 011249 437 ARHLLELGPEKTGNSALLANIY--ASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 437 ~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~ 477 (490)
|+++.+.++.. ....+..+. ...++..+|.++.++..+.
T Consensus 381 ~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 381 SQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99998877543 333343333 2345667777777765554
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=6.7e-17 Score=142.13 Aligned_cols=228 Identities=11% Similarity=-0.026 Sum_probs=127.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCC--CchhHHHHHHH
Q 011249 211 SCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCD--RTNYVSNALIH 288 (490)
Q Consensus 211 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 288 (490)
..+..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...++.+.+.... ++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 456666677777777777777777776655 55666666666666777777777666666543211 0100
Q ss_pred HHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHH
Q 011249 289 MHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQ 368 (490)
Q Consensus 289 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 368 (490)
.....+..+...+...|++++|...++++.+. .|+.. .+...|++++|...
T Consensus 77 --------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 77 --------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKK 127 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHH
Confidence 00234444444555555555555555555542 23322 12233445555555
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 369 FELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
++++.. ..+.+...+..++..+...|++++|.+.+++.. .+.+...+..+...+...|++++|+..++++++..|+
T Consensus 128 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 128 AEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 555544 222334445555555556666666666655544 2334555556666666666666666666666666666
Q ss_pred CCchHHHHHHHHHhcCCcchHHHHHHHhhhcc
Q 011249 447 KTGNSALLANIYASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 478 (490)
++..+..++.++...|++++|.+.+++..+..
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 66666666666666666666666666655443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=7.4e-17 Score=141.88 Aligned_cols=234 Identities=10% Similarity=-0.048 Sum_probs=171.0
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHhhcCC--CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcc--cC----hhhHHH
Q 011249 179 SVTWVAMIAGYGKCGEVREAKKVFDEISE--PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVR--IS----EVAMVG 250 (490)
Q Consensus 179 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~~ 250 (490)
...+..++..+...|++++|+..|++..+ .+...+..+..++...|++++|++.+++..+.... |+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45788899999999999999999988644 67889999999999999999999999998875321 11 467777
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHH
Q 011249 251 AISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEA 330 (490)
Q Consensus 251 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 330 (490)
+..++...|++++|...++.+.+.. |+. ..+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~--------------------------------------~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA--------------------------------------DILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH--------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh--------------------------------------HHHHHHhHHHHH
Confidence 8888888888888888888877754 221 123344556666
Q ss_pred HHHHHHHHHcCCCCc-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 331 LDMFLKMRNEGIEPN-QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 331 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
...++++... .|+ ...+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|.+.+++..
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666666653 332 345666666677777777777777777663 34456667777777777777777777777665
Q ss_pred --CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcC------CCCCchHHHHHH
Q 011249 410 --DFCDAGTWGALLGACKVHVNAELGEIAARHLLELG------PEKTGNSALLAN 456 (490)
Q Consensus 410 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 456 (490)
.+.+...+..+...+...|++++|.+.++++.+.. |++..++..+..
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 34456677788888888888888888888888877 776666665554
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=5.4e-17 Score=138.58 Aligned_cols=194 Identities=14% Similarity=0.014 Sum_probs=144.6
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHH
Q 011249 277 DRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGV 352 (490)
Q Consensus 277 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l 352 (490)
|+++..+..+...+...|++++|...|++..+ .++..+..+..++.+.|++++|+..+++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45566666677777777777777777776654 35567777777777788888888888887774 34 34567777
Q ss_pred HHHhcCC-----------CChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHH
Q 011249 353 LTACSHG-----------GLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGA 419 (490)
Q Consensus 353 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 419 (490)
...+... |++++|...+++..+. .|.+...+..+..++...|++++|+..|++.. . .++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 7777777 9999999999999873 34457778889999999999999999998876 5 77788999
Q ss_pred HHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhh
Q 011249 420 LLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMIS 475 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (490)
+..++...|++++|+..|+++++.+|+++.++..++.++.+.|++++|+..+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998764
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=3.5e-16 Score=138.86 Aligned_cols=246 Identities=10% Similarity=-0.017 Sum_probs=150.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCc--hhHHHHHHHH
Q 011249 212 CWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRT--NYVSNALIHM 289 (490)
Q Consensus 212 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 289 (490)
.+......+...|++++|+..|++..+... .+...+..+..++...|++++|...++.+.+....++ ...+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344455566666666666666666665431 1334555566666666666666666666655221111 2235556666
Q ss_pred HHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHH
Q 011249 290 HSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDG 365 (490)
Q Consensus 290 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 365 (490)
+...|++++|+..|++..+ .+..+|..+...|...|++++|...+++..+. .| +...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666543 24456666666666777777777777666653 33 334555555222233477777
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHhhcCC---hHHHHHHHHhcc----CCCC------hhhHHHHHHHHhhhCChHH
Q 011249 366 CKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQ---LEKAHSLIMDYK----DFCD------AGTWGALLGACKVHVNAEL 432 (490)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~~~------~~~~~~l~~~~~~~g~~~~ 432 (490)
...++++.+. .+.+...+..+..++...|+ +++|...+++.. ..|+ ...|..+...+...|++++
T Consensus 162 ~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 7777777663 23335556666666666666 666776666554 1233 2467778888999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 011249 433 GEIAARHLLELGPEKTGNSALLANIYASMG 462 (490)
Q Consensus 433 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 462 (490)
|.+.++++++.+|+++.+...+..+....+
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999999999998888877665544
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.73 E-value=2.9e-16 Score=139.51 Aligned_cols=241 Identities=9% Similarity=-0.107 Sum_probs=188.9
Q ss_pred hcCChHHHHHHHHHHHHcCc---ccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHH
Q 011249 222 QNGYAKAAIEMYKVMRQENV---RISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDL 298 (490)
Q Consensus 222 ~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 298 (490)
..|++++|+..++++.+... +.+...+..+..++...|++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45778889998888887532 1245677888888888999999999999888875 5677888888999999999999
Q ss_pred HHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011249 299 AWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRV 375 (490)
Q Consensus 299 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 375 (490)
|...|+++.+ .+...+..+..++...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999988765 36778899999999999999999999999984 455444444444556679999999999888873
Q ss_pred cCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccC-CC-----ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCc
Q 011249 376 FGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKD-FC-----DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTG 449 (490)
Q Consensus 376 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 449 (490)
.+++...+ .++..+...++.++|.+.+++... .| +...+..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 44454444 477778888899999999987762 22 2568888999999999999999999999999998755
Q ss_pred hHHHHHHHHHhcCCcchHHHHH
Q 011249 450 NSALLANIYASMGKWKDSEIVK 471 (490)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~ 471 (490)
.+ +.++...|++++|++.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 66788889999998876
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=3.2e-16 Score=149.33 Aligned_cols=342 Identities=10% Similarity=0.021 Sum_probs=236.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-CCHhHHHHHHHHHHhCCCh---HHHHHHHHHhccCCchhHHHHHHHHHhcC-----
Q 011249 123 VICGYTKIGLMDDAQRLFDSMAE-RNVISWSAMVAGYANCGNM---KAAKEFYDRMTEKNSVTWVAMIAGYGKCG----- 193 (490)
Q Consensus 123 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~----- 193 (490)
+...+.+.|++++|+++|++..+ .++..+..+...|...|+. ++|++.|++..+.++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 34457888999999999999876 3556667777778888888 99999999998878888888888666655
Q ss_pred ChhHHHHHHhhcCC-CCHHhHHHHHHHHHhcCChHH---HHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHH
Q 011249 194 EVREAKKVFDEISE-PDASCWAAMTVCYVQNGYAKA---AIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAK 269 (490)
Q Consensus 194 ~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 269 (490)
++++|++.|++..+ .+...+..|...|...+..++ +.+.+......| +......+...+...+.++.+.....
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 78899999988765 445578888888888766544 455555555444 45566677777877776555544433
Q ss_pred HHHhcCCCCchhHHHHHHHHHHhcC---ChHHHHHHHhcccC---CChhHHHHHHHHHHhc----CChHHHHHHHHHHHH
Q 011249 270 HVDEGCCDRTNYVSNALIHMHSKCG---YLDLAWREFSRIKN---KDVISYSSMITAFADH----GKSQEALDMFLKMRN 339 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~ 339 (490)
.+.+.-...++..+..|..+|...| +.++|+..|++..+ ++...+..+...|... +++++|...|++..
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 3332222333447788999999999 99999999998765 3444446777777654 69999999999987
Q ss_pred cCCCCcHHHHHHHHHH-h--cCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcC-----ChHHHHHHHHhccCC
Q 011249 340 EGIEPNQVTFIGVLTA-C--SHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSG-----QLEKAHSLIMDYKDF 411 (490)
Q Consensus 340 ~~~~p~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~ 411 (490)
.| +...+..+... + ...+++++|...|++..+. | ++..+..|..+|. .| ++++|.++|++.. +
T Consensus 245 ~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~ 315 (452)
T 3e4b_A 245 PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G 315 (452)
T ss_dssp GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T
T ss_pred CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C
Confidence 43 33444455544 3 4589999999999999874 4 5667777888887 55 9999999999998 7
Q ss_pred CChhhHHHHHHHHhh----hCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCcchHHHHHHHhhhccc
Q 011249 412 CDAGTWGALLGACKV----HVNAELGEIAARHLLELGPEKTGNSALLANIYAS----MGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 412 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 479 (490)
.++.....+...|.. ..|+++|.+.|+++.+ +.++.....|+.+|.. ..+.++|...+++..+.|.
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 788888888877766 3499999999999987 4568889999998875 4588999999999887764
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=1e-14 Score=129.52 Aligned_cols=224 Identities=9% Similarity=-0.029 Sum_probs=113.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhc----cCChHHHHHHHHHHHhcCCCCchhHHH
Q 011249 209 DASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQ----LGDVEMAAILAKHVDEGCCDRTNYVSN 284 (490)
Q Consensus 209 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 284 (490)
++.++..+...+...|++++|++.|++..+.+ +...+..+...+.. .+++++|...+++..+.+ ++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45566666677777777777777777766622 34455556666666 666677776666666554 444455
Q ss_pred HHHHHHHh----cCChHHHHHHHhcccC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 011249 285 ALIHMHSK----CGYLDLAWREFSRIKN-KDVISYSSMITAFAD----HGKSQEALDMFLKMRNEGIEPNQVTFIGVLTA 355 (490)
Q Consensus 285 ~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 355 (490)
.+...|.. .+++++|+..|++..+ .++..+..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 55555555 5555555555554443 234445555555555 555555555555555432 23333334444
Q ss_pred hcC----CCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhh----cCChHHHHHHHHhccCCCChhhHHHHHHHHhh-
Q 011249 356 CSH----GGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGR----SGQLEKAHSLIMDYKDFCDAGTWGALLGACKV- 426 (490)
Q Consensus 356 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~- 426 (490)
|.. .+++++|...+++..+. + ++..+..+..+|.. .+++++|.+.|++.....+...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 433 44555555555544441 1 22333344444444 44444444444443322223333444444444
Q ss_pred ---hCChHHHHHHHHHHHhcCC
Q 011249 427 ---HVNAELGEIAARHLLELGP 445 (490)
Q Consensus 427 ---~g~~~~a~~~~~~~~~~~p 445 (490)
.+++++|.+.++++.+.+|
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 4444444444444444443
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=3.4e-15 Score=137.84 Aligned_cols=247 Identities=9% Similarity=-0.006 Sum_probs=198.4
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCC-hHHHHHHHHHHHhcCCCCchhHHHHHH
Q 011249 209 DASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGD-VEMAAILAKHVDEGCCDRTNYVSNALI 287 (490)
Q Consensus 209 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 287 (490)
+...|..+..++.+.|++++|++.+++..+... -+...|..+..++...|+ +++|...++++.+.. +.+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 345677888888888999999999998887642 256778888888888886 999999999988876 66778888888
Q ss_pred HHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcC-CCCh
Q 011249 288 HMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSH-GGLV 362 (490)
Q Consensus 288 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~ 362 (490)
.++...|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++. .| +...|..+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 889999999999999988875 46778888999999999999999999999985 44 55688888888887 6665
Q ss_pred HHH-----HHHHHHHHHHcCCCCCchHHHHHHHHHhhcC--ChHHHHHHHHhccC-CCChhhHHHHHHHHhhhC------
Q 011249 363 EDG-----CKQFELMTRVFGIKPLTEHLTCMVDLLGRSG--QLEKAHSLIMDYKD-FCDAGTWGALLGACKVHV------ 428 (490)
Q Consensus 363 ~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g------ 428 (490)
++| +..++++.+. .+-+...|..+..++...| ++++|.+.+.++.. +.+...+..++..+...|
T Consensus 252 ~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 777 4778888773 3445678888888888888 68999998887742 345667888888887764
Q ss_pred --C-hHHHHHHHHHH-HhcCCCCCchHHHHHHHHHhc
Q 011249 429 --N-AELGEIAARHL-LELGPEKTGNSALLANIYASM 461 (490)
Q Consensus 429 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 461 (490)
+ .++|+++++++ .+.+|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 899999999999888777654
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.69 E-value=7.9e-16 Score=133.99 Aligned_cols=209 Identities=15% Similarity=0.032 Sum_probs=115.3
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHH
Q 011249 246 VAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFA 322 (490)
Q Consensus 246 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 322 (490)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+ .+...+..+...+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 344445555555555555555555555543 33445555555555555555555555555443 24455566666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHH
Q 011249 323 DHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAH 402 (490)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 402 (490)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+...|++++|.
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHH
Confidence 6666677766666666542 224455666666666677777777777766652 3334556666666667777777777
Q ss_pred HHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 011249 403 SLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIY 458 (490)
Q Consensus 403 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 458 (490)
+.++++. .+.+..++..+...+...|++++|.+.++++.+..|+++.++..++.+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 7766554 3334556666666777777777777777777777777666666555443
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=2.8e-14 Score=126.63 Aligned_cols=224 Identities=11% Similarity=-0.052 Sum_probs=188.0
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcccC-CChhHHHHHH
Q 011249 244 SEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSK----CGYLDLAWREFSRIKN-KDVISYSSMI 318 (490)
Q Consensus 244 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~ 318 (490)
+...+..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+ .++..+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4567777888888899999999999998883 345677778888888 9999999999988765 4677888888
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 011249 319 TAFAD----HGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSH----GGLVEDGCKQFELMTRVFGIKPLTEHLTCMVD 390 (490)
Q Consensus 319 ~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 390 (490)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 89988 999999999999998864 66777888888887 89999999999999873 3 5567777888
Q ss_pred HHhh----cCChHHHHHHHHhccCCCChhhHHHHHHHHhh----hCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh--
Q 011249 391 LLGR----SGQLEKAHSLIMDYKDFCDAGTWGALLGACKV----HVNAELGEIAARHLLELGPEKTGNSALLANIYAS-- 460 (490)
Q Consensus 391 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 460 (490)
.|.. .+++++|.+.|++.....++..+..+...+.. .+++++|++.++++.+.+| +..+..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8887 89999999999887745567788888888888 8999999999999998866 6788889999998
Q ss_pred --cCCcchHHHHHHHhhhccc
Q 011249 461 --MGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 461 --~g~~~~A~~~~~~~~~~~~ 479 (490)
.+++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 8999999999998887764
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=4.3e-15 Score=131.77 Aligned_cols=232 Identities=9% Similarity=-0.027 Sum_probs=191.1
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--CCh----hHHHHHH
Q 011249 245 EVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--KDV----ISYSSMI 318 (490)
Q Consensus 245 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~ 318 (490)
...+......+...|++++|...++.+.+.. |.+...+..+..+|...|++++|+..++++.+ ++. ..|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3456677788999999999999999998876 55666888899999999999999999998876 222 3488999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCCh
Q 011249 319 TAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQL 398 (490)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 398 (490)
..+...|++++|+..++++.+.. +.+...+..+...+...|++++|...+++..+ ..+.+...+..+...+...+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999852 23456888999999999999999999999986 3444566777777344455699
Q ss_pred HHHHHHHHhcc--CCCChhhHHHHHHHHhhhCC---hHHHHHHHHHHHhcC---CCC-----CchHHHHHHHHHhcCCcc
Q 011249 399 EKAHSLIMDYK--DFCDAGTWGALLGACKVHVN---AELGEIAARHLLELG---PEK-----TGNSALLANIYASMGKWK 465 (490)
Q Consensus 399 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~ 465 (490)
++|.+.|+++. .+.+...+..+..++...|+ +++|...++++.+.. |+. ..+|..++.+|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999998877 44457788888888888888 889999999999865 442 258888999999999999
Q ss_pred hHHHHHHHhhhcccc
Q 011249 466 DSEIVKMMISETEKK 480 (490)
Q Consensus 466 ~A~~~~~~~~~~~~~ 480 (490)
+|.+.++++.+..+.
T Consensus 239 ~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 239 KADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCcc
Confidence 999999999876553
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=1e-14 Score=127.77 Aligned_cols=195 Identities=15% Similarity=0.055 Sum_probs=91.5
Q ss_pred HHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHH
Q 011249 253 SACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQE 329 (490)
Q Consensus 253 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 329 (490)
..+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+...+..+...+...|++++
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHH
Confidence 33333334444443333333332 22233333333444444444444444433322 133344444445555555555
Q ss_pred HHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhc
Q 011249 330 ALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDY 408 (490)
Q Consensus 330 a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 408 (490)
|...++++.+.+..| +...+..+...+...|++++|...++++.+. .+.+...+..++..+...|++++|...++++
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555554422233 2234445555555555555555555555542 2223444555555555555555555555554
Q ss_pred c--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCch
Q 011249 409 K--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGN 450 (490)
Q Consensus 409 ~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 450 (490)
. .+.+...+..+...+...|++++|.+.++++.+..|+++..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 202 AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 3 22334445555555555666666666666666666555443
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=3.9e-15 Score=127.02 Aligned_cols=204 Identities=15% Similarity=-0.001 Sum_probs=92.9
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 011249 210 ASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHM 289 (490)
Q Consensus 210 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (490)
...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++++.+.. |.+...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3445555555556666666666665555442 1234455555555555566666655555555554 3344445555555
Q ss_pred HHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHH
Q 011249 290 HSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQ 368 (490)
Q Consensus 290 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 368 (490)
+...+.. ... .....|++++|+..+++..+. .| +...+..+..++...|++++|+..
T Consensus 83 ~~~~~~~-----------~~~---------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 83 YVALYRQ-----------AED---------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp HHHHHHT-----------CSS---------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhhhh-----------hhh---------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHH
Confidence 5444000 000 000115555555555555542 23 233444455555555555555555
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHH
Q 011249 369 FELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHL 440 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (490)
|+++.+. . .++..+..+..+|...|++++|...|++.. .+.+...+..+..++...|++++|+..+++.
T Consensus 141 ~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 141 LKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555553 2 444455555555555555555555555443 2334445555555555555555555555543
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=2.3e-15 Score=130.98 Aligned_cols=199 Identities=11% Similarity=0.026 Sum_probs=159.2
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 011249 278 RTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLT 354 (490)
Q Consensus 278 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 354 (490)
.....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456677788889999999999999998865 367788999999999999999999999999852 335678888999
Q ss_pred HhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHH
Q 011249 355 ACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAEL 432 (490)
Q Consensus 355 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 432 (490)
.+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++. .+.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999884 45567788899999999999999999998876 45567889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 433 GEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 433 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
|...++++.+..|+++.++..++.++...|++++|.+.++++.+..+
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99999999999999999999999999999999999999999987654
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=1.9e-14 Score=123.40 Aligned_cols=201 Identities=10% Similarity=-0.038 Sum_probs=97.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhc-
Q 011249 249 VGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADH- 324 (490)
Q Consensus 249 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~- 324 (490)
..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...++++.+ .+..++..++..+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc
Confidence 333333444444444444444443332 22233333344444444444444444443322 1333444455555555
Q ss_pred CChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHH
Q 011249 325 GKSQEALDMFLKMRNEGIEPN-QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHS 403 (490)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 403 (490)
|++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..++.++...|++++|.+
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555554222232 334555555555566666666666655552 22334455555555556666666666
Q ss_pred HHHhcc--CC-CChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHH
Q 011249 404 LIMDYK--DF-CDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSA 452 (490)
Q Consensus 404 ~~~~~~--~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 452 (490)
.++++. .+ .+...+..+...+...|+.+.+..+++.+.+..|+++....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 169 YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 555544 22 34444444445555566666666666666656666554443
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=5e-15 Score=136.72 Aligned_cols=229 Identities=10% Similarity=-0.019 Sum_probs=197.2
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC-hHHHHHHHhcccC---CChhHHHHHHHH
Q 011249 245 EVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGY-LDLAWREFSRIKN---KDVISYSSMITA 320 (490)
Q Consensus 245 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~l~~~ 320 (490)
...|..+..++...|++++|...++++.+.. |.+..+|+.+..++...|+ +++|+..|+++.. .+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3567778888899999999999999999987 6778899999999999997 9999999999876 467899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhh-cCCh
Q 011249 321 FADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGR-SGQL 398 (490)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 398 (490)
+...|++++|+..|+++++. .| +...|..+..++...|++++|+..++++.+. .+.+...|+.+..++.. .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999985 45 5678999999999999999999999999983 45567889999999999 6665
Q ss_pred HHH-----HHHHHhcc--CCCChhhHHHHHHHHhhhC--ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-------
Q 011249 399 EKA-----HSLIMDYK--DFCDAGTWGALLGACKVHV--NAELGEIAARHLLELGPEKTGNSALLANIYASMG------- 462 (490)
Q Consensus 399 ~~A-----~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 462 (490)
++| ++.|++.. .+.+...|..+...+...| ++++|++.++++ +.+|+++.++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 888 47777665 4556779999999998888 689999999998 889999999999999999975
Q ss_pred --CcchHHHHHHHh-hhccc
Q 011249 463 --KWKDSEIVKMMI-SETEK 479 (490)
Q Consensus 463 --~~~~A~~~~~~~-~~~~~ 479 (490)
.+++|+++++++ .+.++
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 258999999998 55443
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.66 E-value=1.5e-15 Score=143.40 Aligned_cols=260 Identities=13% Similarity=-0.012 Sum_probs=131.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCcccCh----hhHHHHHHHHhccCChHHHHHHHHHHHhc----C-CCCchhHHHHH
Q 011249 216 MTVCYVQNGYAKAAIEMYKVMRQENVRISE----VAMVGAISACTQLGDVEMAAILAKHVDEG----C-CDRTNYVSNAL 286 (490)
Q Consensus 216 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l 286 (490)
+...+...|++++|+..|+++.+.... +. ..+..+..++...|++++|...++++.+. + .+.....+..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 334444444444444444444443211 11 23444444444444444444444443322 0 01122334444
Q ss_pred HHHHHhcCChHHHHHHHhcccC---------CChhHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHc
Q 011249 287 IHMHSKCGYLDLAWREFSRIKN---------KDVISYSSMITAFADHGK-----------------SQEALDMFLKMRNE 340 (490)
Q Consensus 287 ~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~ 340 (490)
...|...|++++|...|++..+ ....++..+...|...|+ +++|...+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4455555555555555444332 012344555555555555 55665555554431
Q ss_pred ----CCCCc-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC----chHHHHHHHHHhhcCChHHHHHHHHhcc--
Q 011249 341 ----GIEPN-QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL----TEHLTCMVDLLGRSGQLEKAHSLIMDYK-- 409 (490)
Q Consensus 341 ----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 409 (490)
+..+. ...+..+...+...|++++|...+++..+.....++ ...+..+..+|...|++++|.+.+++..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11111 125555556666666666666666666542111111 1245566666667777777776665544
Q ss_pred --CC----CChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 410 --DF----CDAGTWGALLGACKVHVNAELGEIAARHLLELGPEK------TGNSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 410 --~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
.. ....++..+...+...|++++|.+.++++++..+.. ..++..++.+|...|++++|.+.+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 00 113455666666777777777777777776654322 33666677777777777777777776544
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=1.6e-14 Score=124.02 Aligned_cols=201 Identities=7% Similarity=-0.092 Sum_probs=175.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 011249 277 DRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVL 353 (490)
Q Consensus 277 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 353 (490)
+.+...+..++..+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 44567788899999999999999999998765 457789999999999999999999999999852 33567888899
Q ss_pred HHhcCC-CChHHHHHHHHHHHHHcCCCCC-chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCC
Q 011249 354 TACSHG-GLVEDGCKQFELMTRVFGIKPL-TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVN 429 (490)
Q Consensus 354 ~~~~~~-g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 429 (490)
..+... |++++|...++++.+ .+..|+ ...+..++.++...|++++|...++++. .+.+...+..++..+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 999999 999999999999987 233343 6778889999999999999999998876 44567889999999999999
Q ss_pred hHHHHHHHHHHHhcCC-CCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 430 AELGEIAARHLLELGP-EKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 430 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
+++|.+.++++.+..| .++..+..++..+...|+.++|..+++.+.+..+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 9999999999999999 9999999999999999999999999999876543
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=1.2e-14 Score=127.35 Aligned_cols=198 Identities=6% Similarity=-0.093 Sum_probs=174.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 011249 280 NYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTAC 356 (490)
Q Consensus 280 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 356 (490)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56678888999999999999999998765 467789999999999999999999999999853 33667888899999
Q ss_pred cCCCChHHHHHHHHHHHHHcCCCC-CchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHH
Q 011249 357 SHGGLVEDGCKQFELMTRVFGIKP-LTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELG 433 (490)
Q Consensus 357 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 433 (490)
...|++++|..+++++.+ .+..| +...+..++.++...|++++|.+.++++. .+.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999976 23444 46677889999999999999999998876 445678899999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 434 EIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 434 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
...++++.+..|+++..+..++.++...|++++|.+.++++.+..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999987654
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.65 E-value=3.5e-15 Score=140.58 Aligned_cols=295 Identities=12% Similarity=0.014 Sum_probs=202.5
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhcCC--C-C----HHhHHHHHHHHHhcCChHHHHHHHHHHHHc----Cccc-Ch
Q 011249 178 NSVTWVAMIAGYGKCGEVREAKKVFDEISE--P-D----ASCWAAMTVCYVQNGYAKAAIEMYKVMRQE----NVRI-SE 245 (490)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~ 245 (490)
....+......+...|++++|...|+++.+ | + ...+..+...+...|++++|+..+++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344566777888888888888888887654 2 2 356777888888888888888888886542 2122 24
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhcCC----C-CchhHHHHHHHHHHhcCC--------------------hHHHH
Q 011249 246 VAMVGAISACTQLGDVEMAAILAKHVDEGCC----D-RTNYVSNALIHMHSKCGY--------------------LDLAW 300 (490)
Q Consensus 246 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~--------------------~~~A~ 300 (490)
..+..+...+...|++++|...++++.+... + ....++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 5677777888888888888888887755321 1 113466777788888888 88888
Q ss_pred HHHhcccC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCc----HHHHHHHHHHhcCCCChHHHH
Q 011249 301 REFSRIKN-----K----DVISYSSMITAFADHGKSQEALDMFLKMRNEG-IEPN----QVTFIGVLTACSHGGLVEDGC 366 (490)
Q Consensus 301 ~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~ 366 (490)
..+++..+ + ...++..+...+...|++++|...+++..+.. -.++ ...+..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 77776543 1 23467777788888888888888888877631 1122 126677777788888888888
Q ss_pred HHHHHHHHHcCCCCC----chHHHHHHHHHhhcCChHHHHHHHHhcc----CCCC----hhhHHHHHHHHhhhCChHHHH
Q 011249 367 KQFELMTRVFGIKPL----TEHLTCMVDLLGRSGQLEKAHSLIMDYK----DFCD----AGTWGALLGACKVHVNAELGE 434 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~ 434 (490)
..+++........++ ..++..+...|...|++++|.+.+++.. ..++ ..++..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888887653111111 4466677788888888888888887665 1111 446677777888888888888
Q ss_pred HHHHHHHhcCCCCC------chHHHHHHHHHhcCCcchHHHHHH
Q 011249 435 IAARHLLELGPEKT------GNSALLANIYASMGKWKDSEIVKM 472 (490)
Q Consensus 435 ~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 472 (490)
+.++++++..+... .++..++.++...|+......-+.
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 371 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIM 371 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 88888888887763 366677777777777776555444
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.64 E-value=5.9e-15 Score=134.98 Aligned_cols=265 Identities=15% Similarity=0.033 Sum_probs=175.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCcccC----hhhHHHHHHHHhccCChHHHHHHHHHHHhc----CCC-CchhHH
Q 011249 213 WAAMTVCYVQNGYAKAAIEMYKVMRQENVRIS----EVAMVGAISACTQLGDVEMAAILAKHVDEG----CCD-RTNYVS 283 (490)
Q Consensus 213 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~ 283 (490)
+......+...|++++|+..|+++.+.... + ...+..+...+...|++++|...++++.+. +.+ ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 334455566666666666666666654321 1 245556666666666776666666654332 111 123455
Q ss_pred HHHHHHHHhcCChHHHHHHHhcccC-----CC----hhHHHHHHHHHHhcCC--------------------hHHHHHHH
Q 011249 284 NALIHMHSKCGYLDLAWREFSRIKN-----KD----VISYSSMITAFADHGK--------------------SQEALDMF 334 (490)
Q Consensus 284 ~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 334 (490)
..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 5666677777777777777666543 11 2366667777777777 77777777
Q ss_pred HHHHHc----CCCCc-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC----chHHHHHHHHHhhcCChHHHHHHH
Q 011249 335 LKMRNE----GIEPN-QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL----TEHLTCMVDLLGRSGQLEKAHSLI 405 (490)
Q Consensus 335 ~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 405 (490)
++..+. +..|. ...+..+...+...|++++|...+++..+.....++ ...+..+...+...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776541 11121 236667777788888888888888887653111111 236677888888999999999988
Q ss_pred Hhcc----CCCC----hhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCcchHHHHH
Q 011249 406 MDYK----DFCD----AGTWGALLGACKVHVNAELGEIAARHLLELGPEK------TGNSALLANIYASMGKWKDSEIVK 471 (490)
Q Consensus 406 ~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~ 471 (490)
++.. ..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|.+.|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 7765 1111 4567778888899999999999999998865432 347888999999999999999999
Q ss_pred HHhhhcc
Q 011249 472 MMISETE 478 (490)
Q Consensus 472 ~~~~~~~ 478 (490)
++..+..
T Consensus 327 ~~a~~~~ 333 (338)
T 3ro2_A 327 EKHLEIS 333 (338)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 9887653
No 57
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.9e-16 Score=156.16 Aligned_cols=124 Identities=6% Similarity=0.049 Sum_probs=104.1
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHhhcC-------CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHH
Q 011249 179 SVTWVAMIAGYGKCGEVREAKKVFDEIS-------EPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGA 251 (490)
Q Consensus 179 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 251 (490)
..+|+++|++|++.|++++|.++|++|. .||..+||+||.+|++.|++++|.++|++|...|+.||..||+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3578888888888888888888886653 389999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCh-HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 011249 252 ISACTQLGDV-EMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWRE 302 (490)
Q Consensus 252 ~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 302 (490)
|.++++.|+. ++|.+++++|.+.|+.||..+|++++..+.+.+-++.+.++
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999885 78889999999999999999999888766655433333333
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.64 E-value=2.9e-15 Score=141.10 Aligned_cols=286 Identities=10% Similarity=-0.056 Sum_probs=216.8
Q ss_pred CCHhHHHHHHHHHHhCCChHHHHHHHHHhcc--C-C----chhHHHHHHHHHhcCChhHHHHHHhhcCC---------CC
Q 011249 146 RNVISWSAMVAGYANCGNMKAAKEFYDRMTE--K-N----SVTWVAMIAGYGKCGEVREAKKVFDEISE---------PD 209 (490)
Q Consensus 146 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~ 209 (490)
+....+......+...|++++|+..|+++.+ | + ...+..+...+...|++++|...+++... ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3456677788899999999999999999885 3 3 25688899999999999999999887643 12
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcc-cC----hhhHHHHHHHHhccCC--------------------hHHH
Q 011249 210 ASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVR-IS----EVAMVGAISACTQLGD--------------------VEMA 264 (490)
Q Consensus 210 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~--------------------~~~a 264 (490)
..++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 457888899999999999999999998764211 12 3477888888999999 9999
Q ss_pred HHHHHHHHhc----CC-CCchhHHHHHHHHHHhcCChHHHHHHHhcccC-----CC----hhHHHHHHHHHHhcCChHHH
Q 011249 265 AILAKHVDEG----CC-DRTNYVSNALIHMHSKCGYLDLAWREFSRIKN-----KD----VISYSSMITAFADHGKSQEA 330 (490)
Q Consensus 265 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a 330 (490)
...++...+. +. +....++..+...|...|++++|...+++..+ ++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999887543 11 12245677888999999999999999988764 22 23788889999999999999
Q ss_pred HHHHHHHHHc----CCCCc-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC----chHHHHHHHHHhhcCChHHH
Q 011249 331 LDMFLKMRNE----GIEPN-QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL----TEHLTCMVDLLGRSGQLEKA 401 (490)
Q Consensus 331 ~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 401 (490)
...+++..+. +..+. ..++..+...+...|++++|...+++..+.....++ ..++..+..+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999998752 11111 347788888899999999999999998764221222 55677889999999999999
Q ss_pred HHHHHhcc-----C--C-CChhhHHHHHHHHhhhCChH
Q 011249 402 HSLIMDYK-----D--F-CDAGTWGALLGACKVHVNAE 431 (490)
Q Consensus 402 ~~~~~~~~-----~--~-~~~~~~~~l~~~~~~~g~~~ 431 (490)
.+.+++.. . . ....++..+...+...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99998765 1 1 12335555556666666554
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=1.9e-14 Score=119.42 Aligned_cols=166 Identities=12% Similarity=0.033 Sum_probs=140.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHH
Q 011249 310 DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCM 388 (490)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 388 (490)
++..|..+...|...|++++|+..|++.++. .| +...+..+..++...|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 5667888888888999999999999998884 44 4567888888888999999999999988873 44456677778
Q ss_pred HHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcch
Q 011249 389 VDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKD 466 (490)
Q Consensus 389 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 466 (490)
...+...++++.|.+.+.+.. .+.+...+..+...+...|++++|++.|+++++.+|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888889999999999888766 455677888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccc
Q 011249 467 SEIVKMMISETEK 479 (490)
Q Consensus 467 A~~~~~~~~~~~~ 479 (490)
|++.+++..+..+
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999998887654
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.63 E-value=5.4e-15 Score=141.72 Aligned_cols=210 Identities=10% Similarity=-0.075 Sum_probs=170.1
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCh-HHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 011249 261 VEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYL-DLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLK 336 (490)
Q Consensus 261 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 336 (490)
++++...++...... +.+...+..+...+...|++ ++|++.|++..+ .+...|..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344445555444432 44566666677777777777 777777776654 3466788888888889999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHhcCC---------CChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhc--------CChH
Q 011249 337 MRNEGIEPNQVTFIGVLTACSHG---------GLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRS--------GQLE 399 (490)
Q Consensus 337 ~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 399 (490)
..+. .|+...+..+...+... |++++|...++++.+. .+.+...+..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8884 67777888888889888 9999999999999883 455677888899999888 9999
Q ss_pred HHHHHHHhcc--CC---CChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHh
Q 011249 400 KAHSLIMDYK--DF---CDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMI 474 (490)
Q Consensus 400 ~A~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (490)
+|++.|++.. .+ .+...|..+..++...|++++|.+.|+++++.+|+++.++..++.++...|++++|.+.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999998876 33 477899999999999999999999999999999999999999999999999999999876554
Q ss_pred h
Q 011249 475 S 475 (490)
Q Consensus 475 ~ 475 (490)
.
T Consensus 319 ~ 319 (474)
T 4abn_A 319 K 319 (474)
T ss_dssp C
T ss_pred c
Confidence 3
No 61
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=2.6e-16 Score=155.18 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=96.5
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhccc-------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH
Q 011249 278 RTNYVSNALIHMHSKCGYLDLAWREFSRIK-------NKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFI 350 (490)
Q Consensus 278 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 350 (490)
....+|++||++|++.|++++|.++|+.|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345678888888888888888888886653 3788888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCCCh-HHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcC
Q 011249 351 GVLTACSHGGLV-EDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSG 396 (490)
Q Consensus 351 ~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 396 (490)
++|.++++.|+. ++|.++|++|.+. |+.||..+|++++....+.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHH
Confidence 888888888874 6788888888886 88888888888776655543
No 62
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=8.5e-15 Score=130.02 Aligned_cols=236 Identities=11% Similarity=-0.089 Sum_probs=140.8
Q ss_pred CChhHHHHHHhhcCC-------CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHH
Q 011249 193 GEVREAKKVFDEISE-------PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAA 265 (490)
Q Consensus 193 ~~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 265 (490)
|++++|++.|+++.+ .+...+..+..++...|++++|+..|+++.+.. +.+...+..+..++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 445555555554433 123455666666666666666666666666543 224556666666666666677776
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011249 266 ILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIE 343 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 343 (490)
..++.+.+.. +.+..++..+..+|...|++++|...|+++.+ |+.......+..+...|++++|...+++..... +
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~ 175 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-D 175 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 6666666654 44556666666677777777777777766654 333333333344455677888888887766642 2
Q ss_pred CcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC-----chHHHHHHHHHhhcCChHHHHHHHHhcc-CCCChhhH
Q 011249 344 PNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL-----TEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCDAGTW 417 (490)
Q Consensus 344 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 417 (490)
++...+ .++..+...++.++|...+++... ..|. ...+..++.+|.+.|++++|...|++.. ..|+ .+
T Consensus 176 ~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~ 249 (275)
T 1xnf_A 176 KEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH--NF 249 (275)
T ss_dssp CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT--TC
T ss_pred cchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch--hH
Confidence 333333 355556666777777777776654 1221 4666777888888888888888887766 2232 23
Q ss_pred HHHHHHHhhhCChHHHHHHH
Q 011249 418 GALLGACKVHVNAELGEIAA 437 (490)
Q Consensus 418 ~~l~~~~~~~g~~~~a~~~~ 437 (490)
.....++...|++++|++.+
T Consensus 250 ~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 33355666777777777665
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=1.7e-14 Score=134.80 Aligned_cols=164 Identities=14% Similarity=0.061 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCc-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHc---CC-CCCch
Q 011249 313 SYSSMITAFADHGKSQEALDMFLKMRNE----GIEPN-QVTFIGVLTACSHGGLVEDGCKQFELMTRVF---GI-KPLTE 383 (490)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~ 383 (490)
+++.+...|...|++++|...+++..+. +-.+. ..++..+...|...|++++|...+++..+.. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 4555555566666666666666555431 10010 1245555666666666666666666655411 11 22244
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcc------CCC-ChhhHHHHHHHHhhhCC---hHHHHHHHHHHHhcCCCCCchHHH
Q 011249 384 HLTCMVDLLGRSGQLEKAHSLIMDYK------DFC-DAGTWGALLGACKVHVN---AELGEIAARHLLELGPEKTGNSAL 453 (490)
Q Consensus 384 ~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~ 453 (490)
++..+..+|.+.|++++|.+.+++.. ..| ....+..+...+...|+ +++|+.++++. ...|....++..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 45566666666666666666665544 011 11223445555666666 55666665554 222334456666
Q ss_pred HHHHHHhcCCcchHHHHHHHhhhc
Q 011249 454 LANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 454 l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
++.+|...|++++|.+.+++..+.
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777777777777777777766554
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=2.1e-14 Score=135.58 Aligned_cols=270 Identities=10% Similarity=-0.011 Sum_probs=163.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHhcc--C-Cc----hhHHHHHHHHHhcCChhHHHHHHhhcCC---------CCHHh
Q 011249 149 ISWSAMVAGYANCGNMKAAKEFYDRMTE--K-NS----VTWVAMIAGYGKCGEVREAKKVFDEISE---------PDASC 212 (490)
Q Consensus 149 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~ 212 (490)
..+..+...+...|++++|+..|+++.+ | +. ..+..+...|...|++++|...|++..+ .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3455566777888888888888887764 2 22 3566666667777777777766665432 12344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-----cccChhhHHHHHHHHhccCC----------hHHHHHHHHHHHhcCCC
Q 011249 213 WAAMTVCYVQNGYAKAAIEMYKVMRQEN-----VRISEVAMVGAISACTQLGD----------VEMAAILAKHVDEGCCD 277 (490)
Q Consensus 213 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~ 277 (490)
+..+...|...|++++|+..+++..... .......+..+...+...|+ .+++...
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~---------- 198 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA---------- 198 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH----------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH----------
Confidence 5556666666666666666666654321 01112244444444444455 0000000
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcccC---------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc--
Q 011249 278 RTNYVSNALIHMHSKCGYLDLAWREFSRIKN---------KDVISYSSMITAFADHGKSQEALDMFLKMRNEGI-EPN-- 345 (490)
Q Consensus 278 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~-- 345 (490)
+++|...+++..+ .....+..+...+...|++++|...+++..+... .++
T Consensus 199 ------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 199 ------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 4444444433321 0223566666777777777777777777665210 011
Q ss_pred --HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCC----CchHHHHHHHHHhhcCChHHHHHHHHhcc----CCC---
Q 011249 346 --QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKP----LTEHLTCMVDLLGRSGQLEKAHSLIMDYK----DFC--- 412 (490)
Q Consensus 346 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~--- 412 (490)
...+..+...+...|++++|...+++......-.. ....+..+..+|...|++++|.+.+++.. ..+
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 12566777778888888888888877765311111 14566677888888888888888887665 111
Q ss_pred -ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 413 -DAGTWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 413 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
...++..+...+...|++++|.+.++++.++.+.
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 1346777888888999999999999998887654
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=9.4e-12 Score=122.58 Aligned_cols=411 Identities=9% Similarity=0.032 Sum_probs=282.2
Q ss_pred hhHHHHHHHHhhhcCCCCchhHhHHHHHHHHHhcCCCCHHHHHHHhccCC--CCCCceehHHHHHHHHhcCC---hhHHH
Q 011249 14 NQLKQVHSYLLKTLTKPHDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIP--KCKTQFLWTSLIRNHVLHAH---FRQSI 88 (490)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~---~~~A~ 88 (490)
+....+.+.+.+ .+.|.. .|..+++.+.+.+. ++.++.+|+++. .|.....|...+..-.+.|+ ++.+.
T Consensus 50 d~i~~lE~~l~~---np~d~~--~W~~yi~~~~~~~~-~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 50 DVIGKLNDMIEE---QPTDIF--LYVKLLKHHVSLKQ-WKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CHHHHHHHHHHH---CTTCHH--HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred HHHHHHHHHHHH---CcCCHH--HHHHHHHHHHhcCc-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 345677888888 779999 99999999999999 999999999986 56655778888888888888 99999
Q ss_pred HHHHHHHhcC-CCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCC--------HHHHHHHHhhcC------CC-CHhHHH
Q 011249 89 LLYAKMHRLG-VLTSGFTFSSVLNACARVPSLLEAVICGYTKIGL--------MDDAQRLFDSMA------ER-NVISWS 152 (490)
Q Consensus 89 ~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~------~~-~~~~~~ 152 (490)
++|++..... ..|+...|..-+.-. .+.++ .+...++|+... .+ +...|.
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~--------------~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~ 189 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYV--------------RKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWN 189 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHH--------------HHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHH--------------HHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHH
Confidence 9999998863 137777776655521 11222 233456777643 23 456777
Q ss_pred HHHHHHH---------hCCChHHHHHHHHHhcc-CC--c-hhHH---HHHHHH----------HhcCChhHHHHHHhhc-
Q 011249 153 AMVAGYA---------NCGNMKAAKEFYDRMTE-KN--S-VTWV---AMIAGY----------GKCGEVREAKKVFDEI- 205 (490)
Q Consensus 153 ~l~~~~~---------~~~~~~~a~~~~~~~~~-~~--~-~~~~---~l~~~~----------~~~~~~~~A~~~~~~~- 205 (490)
..+.... ..++++.+..+|++++. |. . .+|. .+.... -...+++.|...+.++
T Consensus 190 ~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~ 269 (679)
T 4e6h_A 190 EYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWL 269 (679)
T ss_dssp HHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7776543 23457788999999885 21 1 2221 111110 0011233344444331
Q ss_pred ------CC--C--------------C------HHhHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCcccChhhHHH
Q 011249 206 ------SE--P--------------D------ASCWAAMTVCYVQNG-------YAKAAIEMYKVMRQENVRISEVAMVG 250 (490)
Q Consensus 206 ------~~--~--------------~------~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~~~~~~ 250 (490)
.+ | + ...|...+..-...+ ..+.+..+|++....- +-+...|..
T Consensus 270 ~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ 348 (679)
T 4e6h_A 270 NITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFN 348 (679)
T ss_dssp HHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHH
T ss_pred HHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 11 0 0 134555554433332 1244567788887653 336677777
Q ss_pred HHHHHhccCChHHHH-HHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC-------------CC------
Q 011249 251 AISACTQLGDVEMAA-ILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN-------------KD------ 310 (490)
Q Consensus 251 l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~------ 310 (490)
.+..+...|+.++|. .+|+...... |.+...+..++....+.|+++.|.++|+++.+ |+
T Consensus 349 ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~ 427 (679)
T 4e6h_A 349 MANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAIN 427 (679)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhh
Confidence 787788889988896 9999998754 66777788888889999999999999988764 21
Q ss_pred ------hhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHcCCCCCc
Q 011249 311 ------VISYSSMITAFADHGKSQEALDMFLKMRNE-GIEPNQVTFIGVLTACSH-GGLVEDGCKQFELMTRVFGIKPLT 382 (490)
Q Consensus 311 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~ 382 (490)
...|...+....+.|+.+.|..+|.++.+. + .+....|...+..-.+ .++.+.|.++|+...+. .+.+.
T Consensus 428 ~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~ 504 (679)
T 4e6h_A 428 QLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDG 504 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCH
T ss_pred hhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCch
Confidence 235777777778889999999999999875 2 1122333333222223 35689999999999985 44556
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHhcc-CCC----ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCc
Q 011249 383 EHLTCMVDLLGRSGQLEKAHSLIMDYK-DFC----DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTG 449 (490)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 449 (490)
..+...++.....|+.+.|..+|++.. ..| ....|...+..-...|+.+.+..+.+++.+..|+++.
T Consensus 505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 505 EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 667788888888999999999998877 223 3457888888788899999999999999999998653
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.57 E-value=4.6e-14 Score=129.03 Aligned_cols=265 Identities=12% Similarity=0.019 Sum_probs=151.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhcc--C-C----chhHHHHHHHHHhcCChhHHHHHHhhcCC---------CCHHhHH
Q 011249 151 WSAMVAGYANCGNMKAAKEFYDRMTE--K-N----SVTWVAMIAGYGKCGEVREAKKVFDEISE---------PDASCWA 214 (490)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~ 214 (490)
+......+...|++++|+..|+++.+ | + ...+..+...+...|++++|.+.+++..+ .....+.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 34445566666777777776666653 2 1 23444555555555555555555544322 1123344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCcc-cChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc
Q 011249 215 AMTVCYVQNGYAKAAIEMYKVMRQENVR-ISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKC 293 (490)
Q Consensus 215 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 293 (490)
.+...+...|++++|+..+++..+.... ++.. ....++..+...|...
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHAK 136 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHHc
Confidence 4455555555555555555544332100 0100 0012344444445555
Q ss_pred CC--------------------hHHHHHHHhcccC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 011249 294 GY--------------------LDLAWREFSRIKN-----K----DVISYSSMITAFADHGKSQEALDMFLKMRNE---- 340 (490)
Q Consensus 294 ~~--------------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 340 (490)
|+ +++|...+++... + ....+..+...+...|++++|...+++..+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 55 5555555444322 1 1235666677777778888887777776642
Q ss_pred CCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC----chHHHHHHHHHhhcCChHHHHHHHHhcc----CC
Q 011249 341 GIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL----TEHLTCMVDLLGRSGQLEKAHSLIMDYK----DF 411 (490)
Q Consensus 341 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~ 411 (490)
+..+ ....+..+...+...|++++|...+++........++ ...+..+...+...|++++|...+++.. ..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 1111 1226666777777888888888888877653111111 4456677888888899998888887765 11
Q ss_pred C----ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 412 C----DAGTWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 412 ~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
. ...++..+...+...|++++|.+.++++.++.+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 1 1346777888899999999999999999887654
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.56 E-value=2.9e-12 Score=115.60 Aligned_cols=220 Identities=11% Similarity=0.029 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHcCcccChhhHHHHHHHHh-------ccCCh-------HHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 011249 227 KAAIEMYKVMRQENVRISEVAMVGAISACT-------QLGDV-------EMAAILAKHVDEGCCDRTNYVSNALIHMHSK 292 (490)
Q Consensus 227 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 292 (490)
++|+..|++..... +-+...|..++..+. ..|++ ++|..+|++..+.-.|.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888887653 235566666666654 35776 8899999988884225566788888888889
Q ss_pred cCChHHHHHHHhcccC--C-Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-hcCCCChHHHHH
Q 011249 293 CGYLDLAWREFSRIKN--K-DVI-SYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTA-CSHGGLVEDGCK 367 (490)
Q Consensus 293 ~~~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~ 367 (490)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|+++.+.. +++...|...... +...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988876 3 343 78888888889999999999999998753 2233444433333 223699999999
Q ss_pred HHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccC----CC--ChhhHHHHHHHHhhhCChHHHHHHHHHHH
Q 011249 368 QFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKD----FC--DAGTWGALLGACKVHVNAELGEIAARHLL 441 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (490)
+|++..+. .+.+...+..++..+.+.|++++|..+|++... +| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999874 345677888888999999999999999988763 33 34578888888888999999999999999
Q ss_pred hcCCCCCch
Q 011249 442 ELGPEKTGN 450 (490)
Q Consensus 442 ~~~p~~~~~ 450 (490)
+..|+++..
T Consensus 269 ~~~p~~~~~ 277 (308)
T 2ond_A 269 TAFREEYEG 277 (308)
T ss_dssp HHTTTTTSS
T ss_pred HHccccccc
Confidence 999986643
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=1.8e-13 Score=113.48 Aligned_cols=167 Identities=11% Similarity=-0.001 Sum_probs=131.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 011249 279 TNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTA 355 (490)
Q Consensus 279 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 355 (490)
++.+|..+...|...|++++|++.|++..+ .++.++..+..+|...|++++|...++...... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 455667777777777777777777777654 356677778888888888888888888887752 2245566677777
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHH
Q 011249 356 CSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELG 433 (490)
Q Consensus 356 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 433 (490)
+...++++.+...+.+... ..+.+...+..+..+|.+.|++++|++.|++.. .+.+..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8888899999999888887 345567778888889999999999999998776 455677889999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 011249 434 EIAARHLLELGPEKT 448 (490)
Q Consensus 434 ~~~~~~~~~~~p~~~ 448 (490)
++.|+++++.+|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998754
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=3.9e-13 Score=125.56 Aligned_cols=229 Identities=9% Similarity=-0.010 Sum_probs=159.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----Cccc-ChhhHHHHHHHHhccCChHHHHHHHHHHHhcCC------CCchhHHH
Q 011249 216 MTVCYVQNGYAKAAIEMYKVMRQE----NVRI-SEVAMVGAISACTQLGDVEMAAILAKHVDEGCC------DRTNYVSN 284 (490)
Q Consensus 216 l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~ 284 (490)
....+...|++++|+..+++..+. +-.+ ...++..+..++...|+++.|...+.+..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566667777777777766542 1111 234566666667777777777777766654311 11134566
Q ss_pred HHHHHHHhcCChHHHHHHHhcccC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-cHHHHH
Q 011249 285 ALIHMHSKCGYLDLAWREFSRIKN-----KD----VISYSSMITAFADHGKSQEALDMFLKMRNE----GIEP-NQVTFI 350 (490)
Q Consensus 285 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~ 350 (490)
.+..+|...|++++|...|++..+ ++ ..++..+..+|...|++++|...+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 677777788888888777776653 11 246778888899999999999999988762 2324 345788
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHc---CCCCCchHHHHHHHHHhhcCC---hHHHHHHHHhccCCCC-hhhHHHHHHH
Q 011249 351 GVLTACSHGGLVEDGCKQFELMTRVF---GIKPLTEHLTCMVDLLGRSGQ---LEKAHSLIMDYKDFCD-AGTWGALLGA 423 (490)
Q Consensus 351 ~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 423 (490)
.+...+...|++++|...+++..+.. +.+.....+..+...+...|+ +++|..++++....|. ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 88889999999999999999887631 112223335668888889998 8899999988864333 4477788899
Q ss_pred HhhhCChHHHHHHHHHHHhcC
Q 011249 424 CKVHVNAELGEIAARHLLELG 444 (490)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~ 444 (490)
+...|++++|.+.++++.+..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998754
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=1.3e-12 Score=118.04 Aligned_cols=214 Identities=10% Similarity=-0.029 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHh-------cCCh-------HHHHHHHhcccC---C-ChhHHHHHHHHHHh
Q 011249 262 EMAAILAKHVDEGCCDRTNYVSNALIHMHSK-------CGYL-------DLAWREFSRIKN---K-DVISYSSMITAFAD 323 (490)
Q Consensus 262 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 323 (490)
++|...|+++.+.. |.++..|..++..+.. .|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888999988875 6778888888887763 5886 899999998765 3 45689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCc-HH-HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHh-hcCChHH
Q 011249 324 HGKSQEALDMFLKMRNEGIEPN-QV-TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLG-RSGQLEK 400 (490)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 400 (490)
.|++++|..+|+++.+ +.|+ .. .|..++..+.+.|++++|..+|+++.+ ..+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 4564 33 788888889999999999999999987 33445556654444322 3799999
Q ss_pred HHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHhcCCcchHHHHHHHh
Q 011249 401 AHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLEL---GPE-KTGNSALLANIYASMGKWKDSEIVKMMI 474 (490)
Q Consensus 401 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (490)
|.++|++.. .+.+...|..++..+...|++++|..+|+++++. .|+ ...++..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998876 4456789999999999999999999999999996 453 6678999999999999999999999999
Q ss_pred hhcccc
Q 011249 475 SETEKK 480 (490)
Q Consensus 475 ~~~~~~ 480 (490)
.+..+.
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 877654
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=3.3e-14 Score=128.62 Aligned_cols=237 Identities=13% Similarity=0.043 Sum_probs=123.3
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHc-------CcccChhhHHHHHHHHhccCChHHHHHHHHHHHhc------CC
Q 011249 210 ASCWAAMTVCYVQNGYAKAAIEMYKVMRQE-------NVRISEVAMVGAISACTQLGDVEMAAILAKHVDEG------CC 276 (490)
Q Consensus 210 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~ 276 (490)
..++..+...+...|++++|+.+++++.+. ........+..+..++...|++++|...++++.+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777888888888888888888887763 22223456677777777788888888877776543 11
Q ss_pred -CCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCc-HHH
Q 011249 277 -DRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNE------GIEPN-QVT 348 (490)
Q Consensus 277 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p~-~~~ 348 (490)
+....++..+...|...|++++|...|++ +.+. +..|+ ...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------------------------a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKR-------------------------------ALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHH-------------------------------HHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHH-------------------------------HHHHHHHhcCCCChHHHHH
Confidence 12234444555555555555555555544 3331 11121 123
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHc-----C-CCCCchHHHHHHHHHhhcCChHHHHHHHHhccC----------CC
Q 011249 349 FIGVLTACSHGGLVEDGCKQFELMTRVF-----G-IKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKD----------FC 412 (490)
Q Consensus 349 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~ 412 (490)
+..+...+...|++++|..+++++.+.. + .+.....+..+..+|...|++++|.+.++++.. .+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4444444555555555555555444320 0 111123344455555555555555555544330 00
Q ss_pred -C------hhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 413 -D------AGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 413 -~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
. ...+......+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+++++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 0 1111222223344555666666677777667777777777888888888888888877776654
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.52 E-value=2.4e-13 Score=135.50 Aligned_cols=164 Identities=14% Similarity=0.142 Sum_probs=143.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHH
Q 011249 310 DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPN-QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCM 388 (490)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 388 (490)
+..+|+.+..+|.+.|++++|+..|++.++. .|+ ...+..+..+|.+.|++++|+..|+++.+. .+.+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3567888888899999999999999998884 554 568888889999999999999999998873 34457788899
Q ss_pred HHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcch
Q 011249 389 VDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKD 466 (490)
Q Consensus 389 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 466 (490)
..+|.+.|++++|++.|++.. .+.+...|..+..++...|++++|++.|+++++++|+++.++..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998876 445678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q 011249 467 SEIVKMMISET 477 (490)
Q Consensus 467 A~~~~~~~~~~ 477 (490)
|.+.++++.+.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=3.8e-13 Score=111.35 Aligned_cols=166 Identities=14% Similarity=0.046 Sum_probs=104.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHh
Q 011249 314 YSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLG 393 (490)
Q Consensus 314 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 393 (490)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3344444455555555555555544321 123344555555555556666666666655552 2334455556666666
Q ss_pred hcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHH
Q 011249 394 RSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVK 471 (490)
Q Consensus 394 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (490)
..|++++|.+.++++. .+.+...+..+...+...|++++|.+.++++.+..|+++.++..++.++...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666554 33455667777777777888888888888888888887888888888888888888888888
Q ss_pred HHhhhcccccC
Q 011249 472 MMISETEKKKS 482 (490)
Q Consensus 472 ~~~~~~~~~~~ 482 (490)
+++.+......
T Consensus 168 ~~~~~~~~~~~ 178 (186)
T 3as5_A 168 KKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHcCCCch
Confidence 87776654333
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.51 E-value=1.3e-10 Score=114.44 Aligned_cols=400 Identities=8% Similarity=0.004 Sum_probs=273.7
Q ss_pred CCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCC---HHHHHHHH
Q 011249 64 KCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGL---MDDAQRLF 140 (490)
Q Consensus 64 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~ 140 (490)
.|.....|..++..+.+.++++.+..+|+.+... .+.....|...+.. -.+.|. ++.+..+|
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~--------------E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSL--------------EFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH--------------HHTC--CCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHH--------------HHhhCCcchHHHHHHHH
Confidence 5555488999999999999999999999999886 23344444444442 455677 99999999
Q ss_pred hhcCC-----CCHhHHHHHHHHHHhCCCh--------HHHHHHHHHhcc------C-CchhHHHHHHHHH---------h
Q 011249 141 DSMAE-----RNVISWSAMVAGYANCGNM--------KAAKEFYDRMTE------K-NSVTWVAMIAGYG---------K 191 (490)
Q Consensus 141 ~~~~~-----~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~------~-~~~~~~~l~~~~~---------~ 191 (490)
++... |++..|...+.-..+.++. +.+.++|+.... + +...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 99875 6778888877766655543 334577777552 3 3456776666543 2
Q ss_pred cCChhHHHHHHhhcCC-CC---HHhHHHHHHHHHh-------------cCChHHHHHHHHHHHH--cCcc----------
Q 011249 192 CGEVREAKKVFDEISE-PD---ASCWAAMTVCYVQ-------------NGYAKAAIEMYKVMRQ--ENVR---------- 242 (490)
Q Consensus 192 ~~~~~~A~~~~~~~~~-~~---~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~--~~~~---------- 242 (490)
.++++.+.++|++... |. ..+|......-.. ..+++.|...+.++.. .++.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 3457788999998876 32 1233222111111 1223445555555432 1111
Q ss_pred -----c--C------hhhHHHHHHHHhccC-------ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHH-H
Q 011249 243 -----I--S------EVAMVGAISACTQLG-------DVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAW-R 301 (490)
Q Consensus 243 -----p--~------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~ 301 (490)
| + ...|...+.---..+ ..+.+..+|++..... +....+|...+..+...|+.++|. .
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 0 022333333222221 1234567788887764 668888988999999999999996 9
Q ss_pred HHhcccC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCc------------HHHHHHHHHHhc
Q 011249 302 EFSRIKN--K-DVISYSSMITAFADHGKSQEALDMFLKMRNEGI---------EPN------------QVTFIGVLTACS 357 (490)
Q Consensus 302 ~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~l~~~~~ 357 (490)
+|++... | +...|...+...-..|+++.|..+|+++.+... .|+ ...|...+....
T Consensus 366 il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 366 YLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 9988765 3 555677788888899999999999999986310 132 235777777777
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcC-ChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHH
Q 011249 358 HGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSG-QLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGE 434 (490)
Q Consensus 358 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 434 (490)
+.|..+.|..+|.++.+. ...+....|...+..-.+.| +.+.|.++|+... .+.+...|..++......|+.+.|.
T Consensus 446 R~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 889999999999999873 12233455554444444544 5899999998776 3446667778888888899999999
Q ss_pred HHHHHHHhcCCC---CCchHHHHHHHHHhcCCcchHHHHHHHhhhcccc
Q 011249 435 IAARHLLELGPE---KTGNSALLANIYASMGKWKDSEIVKMMISETEKK 480 (490)
Q Consensus 435 ~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 480 (490)
.+|++++...|+ ...++..++..-.+.|+.+.+..+.+++.+..++
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999998873 4567888888888999999999999999887654
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=9.9e-14 Score=125.43 Aligned_cols=238 Identities=11% Similarity=0.002 Sum_probs=146.4
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHhhcCC-----------CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc------C
Q 011249 178 NSVTWVAMIAGYGKCGEVREAKKVFDEISE-----------PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQE------N 240 (490)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 240 (490)
+..++..++..+...|++++|...|+++.+ .....+..+..++...|++++|+..+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 446788899999999999999999988754 12456888999999999999999999998864 2
Q ss_pred c-ccChhhHHHHHHHHhccCChHHHHHHHHHHHhc------CC-CCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChh
Q 011249 241 V-RISEVAMVGAISACTQLGDVEMAAILAKHVDEG------CC-DRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVI 312 (490)
Q Consensus 241 ~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 312 (490)
- ......+..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|...|+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~-------- 177 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ-------- 177 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH--------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH--------
Confidence 1 223567888999999999999999999988654 11 1123334445555555555555555544
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCc-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHc------CCC
Q 011249 313 SYSSMITAFADHGKSQEALDMFLKMRNE------GIEPN-QVTFIGVLTACSHGGLVEDGCKQFELMTRVF------GIK 379 (490)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~ 379 (490)
++.+. +..|. ...+..+...+...|++++|...++++.+.. ...
T Consensus 178 -----------------------~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 178 -----------------------RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp -----------------------HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -----------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 44331 11221 1244444555555555555555555554310 011
Q ss_pred CC-ch------HHHHHHHHHhhcCChHHHHHHHHhcc-C-CCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 380 PL-TE------HLTCMVDLLGRSGQLEKAHSLIMDYK-D-FCDAGTWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 380 ~~-~~------~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
+. .. .+..+...+...+.+.+|...++... . +....++..+..++...|++++|.+.+++++++.|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 11 12222333445556666666666655 2 234567888899999999999999999999988765
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.48 E-value=2.4e-11 Score=112.91 Aligned_cols=262 Identities=9% Similarity=-0.061 Sum_probs=123.2
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCC----CCH----HhHHHHHHHHHhcCChHHHHHHHHHHHHcCcc-cCh----hhHHH
Q 011249 184 AMIAGYGKCGEVREAKKVFDEISE----PDA----SCWAAMTVCYVQNGYAKAAIEMYKVMRQENVR-ISE----VAMVG 250 (490)
Q Consensus 184 ~l~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~----~~~~~ 250 (490)
.....+...|++++|...+++... .+. ..++.+...+...|++++|...+++....... ++. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 334445556666666666555321 111 13445555566666666666666665532111 111 22344
Q ss_pred HHHHHhccCChHHHHHHHHHHHhc----CCC--C-chhHHHHHHHHHHhcCChHHHHHHHhcccC--C------ChhHHH
Q 011249 251 AISACTQLGDVEMAAILAKHVDEG----CCD--R-TNYVSNALIHMHSKCGYLDLAWREFSRIKN--K------DVISYS 315 (490)
Q Consensus 251 l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~------~~~~~~ 315 (490)
+...+...|++++|...+++..+. +.+ | ....+..+...+...|++++|...+++... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 555556666666666666655432 111 1 123344455555666666666666555432 1 113444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCc--HHHHH----HHHHHhcCCCChHHHHHHHHHHHHHcCCCCC---chHHH
Q 011249 316 SMITAFADHGKSQEALDMFLKMRNEGIEPN--QVTFI----GVLTACSHGGLVEDGCKQFELMTRVFGIKPL---TEHLT 386 (490)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~ 386 (490)
.+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.... ...+. ...+.
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHH
Confidence 555555566666666666665544211111 11111 1122244556666666665555431 11000 11233
Q ss_pred HHHHHHhhcCChHHHHHHHHhcc----CC---CCh-hhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 387 CMVDLLGRSGQLEKAHSLIMDYK----DF---CDA-GTWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 387 ~l~~~~~~~g~~~~A~~~~~~~~----~~---~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
.+...+...|++++|...+++.. .. ++. ..+..+..++...|+.++|...++++....+.
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 44555555566666665555443 00 011 13334444555556666666666665555443
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.48 E-value=1.5e-12 Score=112.05 Aligned_cols=190 Identities=12% Similarity=-0.031 Sum_probs=109.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcccC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHH
Q 011249 279 TNYVSNALIHMHSKCGYLDLAWREFSRIKN----KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPN-QVTFIGVL 353 (490)
Q Consensus 279 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~ 353 (490)
++..+......+...|++++|+..|++..+ ++...+..+..++...|++++|+..+++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 445555666666666777777666665543 34455555666666666666666666666653 343 34566666
Q ss_pred HHhcCCCChHHHHHHHHHHHHHcCCCCCc-------hHHHHHHHHHhhcCChHHHHHHHHhcc-CCCC---hhhHHHHHH
Q 011249 354 TACSHGGLVEDGCKQFELMTRVFGIKPLT-------EHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCD---AGTWGALLG 422 (490)
Q Consensus 354 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~ 422 (490)
.++...|++++|...+++..+. .+.+. ..|..+...+...|++++|++.|++.. ..|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 6666666666666666666653 22223 335555566666666666666666554 2232 344555555
Q ss_pred HHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 423 ACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 423 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
++... +...++++....+.++..|... .....+.+++|+..+++..+..+
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC
Confidence 54333 3334455555554443333322 23344556999999998887654
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=7.6e-12 Score=116.51 Aligned_cols=228 Identities=11% Similarity=0.016 Sum_probs=123.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCc-cc----ChhhHHHHHHHHhccCChHHHHHHHHHHHhcCC--C----CchhHH
Q 011249 215 AMTVCYVQNGYAKAAIEMYKVMRQENV-RI----SEVAMVGAISACTQLGDVEMAAILAKHVDEGCC--D----RTNYVS 283 (490)
Q Consensus 215 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~----~~~~~~ 283 (490)
.....+...|++++|+..|++..+... .+ ...++..+..++...|+++.|...+++..+... . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677777777777777664211 11 134566666677777777777777766554311 0 113345
Q ss_pred HHHHHHHHhcCChHHHHHHHhcccC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCcHHHHH
Q 011249 284 NALIHMHSKCGYLDLAWREFSRIKN-----KD----VISYSSMITAFADHGKSQEALDMFLKMRNE----GIEPNQVTFI 350 (490)
Q Consensus 284 ~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~ 350 (490)
+.+..+|...|++++|...|++..+ ++ ..++..+..+|...|++++|...+++..+. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 5566666666666666666655443 11 234555666666667777776666666541 1111234555
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCCCCC---chHHHHHHHHHhhcCC---hHHHHHHHHhccCCCC-hhhHHHHHHH
Q 011249 351 GVLTACSHGGLVEDGCKQFELMTRVFGIKPL---TEHLTCMVDLLGRSGQ---LEKAHSLIMDYKDFCD-AGTWGALLGA 423 (490)
Q Consensus 351 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 423 (490)
.+...+...|++++|...+++..+.....++ ...+..+...+...|+ +++|+.++++....++ ...+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 6666666666666666666666653211111 2223344444555555 5555555555432221 2234445555
Q ss_pred HhhhCChHHHHHHHHHHHh
Q 011249 424 CKVHVNAELGEIAARHLLE 442 (490)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~ 442 (490)
|...|++++|.+.|+++.+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555544
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.46 E-value=1.1e-12 Score=122.17 Aligned_cols=228 Identities=10% Similarity=-0.022 Sum_probs=173.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhcCC--C---CchhHHHHHHHHHHhcCChHHHHHHHhcccC-----CC-----hhH
Q 011249 249 VGAISACTQLGDVEMAAILAKHVDEGCC--D---RTNYVSNALIHMHSKCGYLDLAWREFSRIKN-----KD-----VIS 313 (490)
Q Consensus 249 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~ 313 (490)
......+...|++++|...++++.+... + ....++..+..+|...|+++.|...+++..+ ++ ..+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445567789999999999999876421 1 1245778899999999999999998887654 12 347
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc---CCCCCchHH
Q 011249 314 YSSMITAFADHGKSQEALDMFLKMRNE----GIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVF---GIKPLTEHL 385 (490)
Q Consensus 314 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~ 385 (490)
++.+..+|...|++++|...+++..+. +-.+ ...++..+..+|...|++++|...+++..+.. +.+....++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 888999999999999999999998762 1111 12467888889999999999999999987621 223336677
Q ss_pred HHHHHHHhhcCChHHHHHHHHhcc----C--CC-ChhhHHHHHHHHhhhCC---hHHHHHHHHHHHhcCCCCCchHHHHH
Q 011249 386 TCMVDLLGRSGQLEKAHSLIMDYK----D--FC-DAGTWGALLGACKVHVN---AELGEIAARHLLELGPEKTGNSALLA 455 (490)
Q Consensus 386 ~~l~~~~~~~g~~~~A~~~~~~~~----~--~~-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~ 455 (490)
..+..+|.+.|++++|...+++.. . .+ ....+..+...+...++ +++|+..+++. ...|.....+..++
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la 343 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHH
Confidence 889999999999999999998765 1 12 22345555566777788 77888877762 22344556788999
Q ss_pred HHHHhcCCcchHHHHHHHhhhc
Q 011249 456 NIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
.+|...|++++|.+.+++..+.
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988654
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=2e-12 Score=123.95 Aligned_cols=190 Identities=13% Similarity=-0.033 Sum_probs=86.7
Q ss_pred CHHhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 011249 209 DASCWAAMTVCYVQNGYA-KAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALI 287 (490)
Q Consensus 209 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 287 (490)
+...+..+..++...|++ ++|++.|++..+... -+...+..+..++...|++++|...|+++.+.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 444555555555555555 555555555554421 134455555555555555555555555555443 2334444455
Q ss_pred HHHHhc---------CChHHHHHHHhcccC---CChhHHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCC---
Q 011249 288 HMHSKC---------GYLDLAWREFSRIKN---KDVISYSSMITAFADH--------GKSQEALDMFLKMRNEGIEP--- 344 (490)
Q Consensus 288 ~~~~~~---------~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~p--- 344 (490)
.+|... |++++|+..|++..+ .+...|..+..+|... |++++|+..|++..+. .|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcc
Confidence 555554 444444444444432 2334444444444444 4444444444444442 22
Q ss_pred -cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHH
Q 011249 345 -NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLI 405 (490)
Q Consensus 345 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 405 (490)
+...+..+..+|...|++++|...|+++.+. .+.+...+..+..++...|++++|.+.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444431 1222333334444444444444444433
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.45 E-value=5.9e-12 Score=108.21 Aligned_cols=206 Identities=10% Similarity=0.023 Sum_probs=162.8
Q ss_pred cChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--C-ChhHHHHHHH
Q 011249 243 ISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--K-DVISYSSMIT 319 (490)
Q Consensus 243 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~ 319 (490)
.|+..+......+...|++++|...|+.+.+...+++...+..+..++...|++++|+..|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 356788889999999999999999999999987447777777799999999999999999998875 3 5678899999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCc-H-------HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCC--CchHHHHHH
Q 011249 320 AFADHGKSQEALDMFLKMRNEGIEPN-Q-------VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKP--LTEHLTCMV 389 (490)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~ 389 (490)
++...|++++|+..+++..+. .|+ . ..+..+...+...|++++|...++++.+ ..+. +...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 999999999999999999985 443 3 4577788888999999999999999986 2233 356777888
Q ss_pred HHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 011249 390 DLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYA 459 (490)
Q Consensus 390 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 459 (490)
.+|...|+. +++++. ...+...+.... ....+.+++|+..++++++.+|+++.+...+..+..
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 888765543 333333 123344444333 345677999999999999999999988888776543
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.44 E-value=7.5e-12 Score=103.43 Aligned_cols=169 Identities=9% Similarity=-0.073 Sum_probs=141.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 011249 280 NYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTAC 356 (490)
Q Consensus 280 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 356 (490)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566677888888999999999988876 356788888889999999999999999998752 33567788888889
Q ss_pred cCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHH
Q 011249 357 SHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGE 434 (490)
Q Consensus 357 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 434 (490)
...|++++|...++++.+. .+.+...+..++.++...|++++|.+.++++. .+.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999873 45567788889999999999999999998876 4456778899999999999999999
Q ss_pred HHHHHHHhcCCCCCchH
Q 011249 435 IAARHLLELGPEKTGNS 451 (490)
Q Consensus 435 ~~~~~~~~~~p~~~~~~ 451 (490)
+.++++.+..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999988876543
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.38 E-value=1.5e-11 Score=109.86 Aligned_cols=164 Identities=10% Similarity=-0.046 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCc--HHHHHHHHHHhcCC-CChHHHHHHHHHHHHHcCCCCC----
Q 011249 312 ISYSSMITAFADHGKSQEALDMFLKMRNEG---IEPN--QVTFIGVLTACSHG-GLVEDGCKQFELMTRVFGIKPL---- 381 (490)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~---- 381 (490)
.+|+.+..+|...|++++|+..+++..+.. -.+. ..++..+...|... |++++|+..+++..+...-..+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 345555556666666666666666555410 0111 23555666666664 7777777777766653111111
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHhcc-CCCCh--------hhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCch--
Q 011249 382 TEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCDA--------GTWGALLGACKVHVNAELGEIAARHLLELGPEKTGN-- 450 (490)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-- 450 (490)
..++..+...+.+.|++++|+..|++.. ..|+. ..+..+..++...|++++|+..++++++++|..+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 2345666677777777777777776654 22211 134556666677777777777777777777765442
Q ss_pred ---HHHHHHHHH--hcCCcchHHHHHHHhh
Q 011249 451 ---SALLANIYA--SMGKWKDSEIVKMMIS 475 (490)
Q Consensus 451 ---~~~l~~~~~--~~g~~~~A~~~~~~~~ 475 (490)
+..++.++. ..+++++|+..++++.
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 333444443 3455666666666554
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=5.5e-11 Score=110.48 Aligned_cols=291 Identities=13% Similarity=0.048 Sum_probs=199.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhccC----Cch----hHHHHHHHHHhcCChhHHHHHHhhcCC-----CCH----HhH
Q 011249 151 WSAMVAGYANCGNMKAAKEFYDRMTEK----NSV----TWVAMIAGYGKCGEVREAKKVFDEISE-----PDA----SCW 213 (490)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~ 213 (490)
.......+...|++++|...+++.... +.. ++..+...+...|++++|.+.+++... .+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 444556677899999999999887642 221 456777888889999999999988754 222 335
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----Ccc--c-ChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCC----chhH
Q 011249 214 AAMTVCYVQNGYAKAAIEMYKVMRQE----NVR--I-SEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDR----TNYV 282 (490)
Q Consensus 214 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~ 282 (490)
..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++..+..... ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 67788889999999999999888753 211 2 23456667788889999999999999887653221 2346
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcccC----CC-hhHHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCC---cHHHH
Q 011249 283 SNALIHMHSKCGYLDLAWREFSRIKN----KD-VISYS-----SMITAFADHGKSQEALDMFLKMRNEGIEP---NQVTF 349 (490)
Q Consensus 283 ~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~ 349 (490)
+..+...+...|++++|...+++... ++ ...+. ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 67788889999999999999887643 21 12222 23344778999999999998877643221 12355
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHc---CCCCCc-hHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHHHHHHHh
Q 011249 350 IGVLTACSHGGLVEDGCKQFELMTRVF---GIKPLT-EHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACK 425 (490)
Q Consensus 350 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 425 (490)
..+...+...|++++|...++...... +.+++. ..+..+..++...|+.++|...+++....... ......+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~---~g~~~~~~ 333 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR---TGFISHFV 333 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---HCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc---ccHHHHHH
Confidence 677788888999999999998886531 211122 35566778888999999999998876511000 01122333
Q ss_pred hhCChHHHHHHHHHHHhcCCC
Q 011249 426 VHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~p~ 446 (490)
..| +....+++.+....|.
T Consensus 334 ~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 334 IEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp TTH--HHHHHHHHHHHHTTCS
T ss_pred Hcc--HHHHHHHHHHHhCCCC
Confidence 344 6667777777777764
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.34 E-value=8.5e-12 Score=110.82 Aligned_cols=164 Identities=11% Similarity=0.102 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCc-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHc-----C-CC
Q 011249 313 SYSSMITAFADHGKSQEALDMFLKMRNE------GIEPN-QVTFIGVLTACSHGGLVEDGCKQFELMTRVF-----G-IK 379 (490)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~-~~ 379 (490)
++..+...|...|++++|...++++.+. .-.|+ ...+..+...+...|++++|...++++.+.. + .+
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4455555555555555555555555442 11122 2355556666666666666666666665520 0 11
Q ss_pred CCchHHHHHHHHHhhcCChHHHHHHHHhcc----------CCC-ChhhHHHHHHHHhhhC------ChHHHHHHHHHHHh
Q 011249 380 PLTEHLTCMVDLLGRSGQLEKAHSLIMDYK----------DFC-DAGTWGALLGACKVHV------NAELGEIAARHLLE 442 (490)
Q Consensus 380 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~-~~~~~~~l~~~~~~~g------~~~~a~~~~~~~~~ 442 (490)
....++..+..+|...|++++|.+.+++.. ..+ ....+..+.......+ .+..+...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 123455566666666666666666665543 011 1223333332222222 22333333333333
Q ss_pred cCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 443 LGPEKTGNSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 443 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
..|..+..+..++.+|...|++++|..++++..+
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3355566777788888888888888888877654
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.32 E-value=1e-10 Score=104.54 Aligned_cols=172 Identities=8% Similarity=-0.080 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccC-----CC----hhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCc------
Q 011249 282 VSNALIHMHSKCGYLDLAWREFSRIKN-----KD----VISYSSMITAFADH-GKSQEALDMFLKMRNEGIEPN------ 345 (490)
Q Consensus 282 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~------ 345 (490)
+++.+..+|...|++++|+..|++..+ .+ ..+++.+..+|... |++++|+..|++..+. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 334444444444444444444444332 01 23567777788885 8888888888887762 221
Q ss_pred -HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCc-----hHHHHHHHHHhhcCChHHHHHHHHhcc-CCCCh----
Q 011249 346 -QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLT-----EHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCDA---- 414 (490)
Q Consensus 346 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~---- 414 (490)
..++..+...+...|++++|+..++++.+...-.+.. ..+..+..++...|++++|...|++.. ..|+.
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 2467778888888999999999999888731111111 146677788888999999999998876 23321
Q ss_pred --hhHHHHHHHHh--hhCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 011249 415 --GTWGALLGACK--VHVNAELGEIAARHLLELGPEKTGNSALLA 455 (490)
Q Consensus 415 --~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 455 (490)
..+..++.++. ..+++++|+..|+++.+++|....++..+-
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k 281 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK 281 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 12344555553 456788888888888888876554444443
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=1.3e-11 Score=123.01 Aligned_cols=162 Identities=12% Similarity=0.098 Sum_probs=104.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHH
Q 011249 279 TNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPN-QVTFIGVLT 354 (490)
Q Consensus 279 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~ 354 (490)
+...++.|..+|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|+..|++.++. .|+ ...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 344555566666666666666666665543 24556666666666777777777777776663 443 446666677
Q ss_pred HhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHH
Q 011249 355 ACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAEL 432 (490)
Q Consensus 355 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 432 (490)
++...|++++|++.|++..+. .+-+...+..+..+|...|++++|++.|++.. .+.+...+..++.++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 777777777777777777652 23345666677777777777777777776655 33455677777777777777777
Q ss_pred HHHHHHHHHhcC
Q 011249 433 GEIAARHLLELG 444 (490)
Q Consensus 433 a~~~~~~~~~~~ 444 (490)
|.+.+++++++.
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 777777776643
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.31 E-value=4.4e-10 Score=98.39 Aligned_cols=243 Identities=8% Similarity=-0.003 Sum_probs=161.5
Q ss_pred HHHHhcCChhHHHHHHhhcCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHH
Q 011249 187 AGYGKCGEVREAKKVFDEISEPD-ASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAA 265 (490)
Q Consensus 187 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 265 (490)
+-..-.|++..++.-...+...+ ...-..+.++++..|++... ..-.|....+..+...+ ..+ +.
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HH
Confidence 44456788888888666654422 23334456788888887642 11233333444444333 322 66
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011249 266 ILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNK-----DVISYSSMITAFADHGKSQEALDMFLKMRNE 340 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (490)
..+++..+.+ +++......+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~- 164 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN- 164 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 7777776655 455555567888888889999999998887542 445677788888999999999999999887
Q ss_pred CCCC-----cHHHHHHHHHHh----cCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccC-
Q 011249 341 GIEP-----NQVTFIGVLTAC----SHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKD- 410 (490)
Q Consensus 341 ~~~p-----~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 410 (490)
..| +..+...+..++ ...++..+|..+|+++... .|+......++.++.+.|++++|.+.++.+..
T Consensus 165 -~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 -AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp -HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred -cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 366 355556666552 2334888899999998653 34422323344478888999999998876542
Q ss_pred -----------CCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchH
Q 011249 411 -----------FCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNS 451 (490)
Q Consensus 411 -----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 451 (490)
+.++.++..++......|+ +|.++++++.+..|++|.+.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 3355666566666666676 78888999999899877644
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.31 E-value=2.5e-10 Score=99.99 Aligned_cols=237 Identities=11% Similarity=0.005 Sum_probs=136.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHH
Q 011249 219 CYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDL 298 (490)
Q Consensus 219 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 298 (490)
-..-.|++..++.-..++. .........-+.+++...|++... ....|....+..+... ...+
T Consensus 22 n~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT----
T ss_pred HHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc----
Confidence 3445677777666322221 111222333444666666665531 1122333333333332 2322
Q ss_pred HHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 011249 299 AWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTR 374 (490)
Q Consensus 299 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 374 (490)
|+..|++... ++..++..+..++...|++++|++++.+.+..|..+ +...+...+..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5566665543 344555566777777788888888777776644322 344666677777777888888888877765
Q ss_pred HcCCCC-----CchHHHHHHHH--HhhcC--ChHHHHHHHHhcc-CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhc-
Q 011249 375 VFGIKP-----LTEHLTCMVDL--LGRSG--QLEKAHSLIMDYK-DFCDAGTWGALLGACKVHVNAELGEIAARHLLEL- 443 (490)
Q Consensus 375 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 443 (490)
. .| +..+...++.+ ....| ++++|..+|+++. ..|+..+...++.++...|++++|.+.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 44 23444445544 22233 7777777777766 2343223334444677778888888877766664
Q ss_pred ---------CCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 444 ---------GPEKTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 444 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
+|+++.++..++.+....|+ +|.++++++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 47777777777666666675 777777777654
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=1.2e-10 Score=102.24 Aligned_cols=82 Identities=12% Similarity=0.016 Sum_probs=60.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHhcc-CCCC----hhhHHHHHHHHhhh----------CChHHHHHHHHHHHhcCCCCCc-
Q 011249 386 TCMVDLLGRSGQLEKAHSLIMDYK-DFCD----AGTWGALLGACKVH----------VNAELGEIAARHLLELGPEKTG- 449 (490)
Q Consensus 386 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~- 449 (490)
..+..+|.+.|++++|+..|+++. ..|+ ...+..+..++... |++++|+..++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 556788899999999999998876 2232 34667777777765 8899999999999999999864
Q ss_pred --hHHHHHHHHHhcCCcchH
Q 011249 450 --NSALLANIYASMGKWKDS 467 (490)
Q Consensus 450 --~~~~l~~~~~~~g~~~~A 467 (490)
+...+..++.+.|+++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 445556566555555443
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.28 E-value=3e-10 Score=97.19 Aligned_cols=182 Identities=12% Similarity=-0.010 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH----HHHHH
Q 011249 282 VSNALIHMHSKCGYLDLAWREFSRIKN--KD----VISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQ----VTFIG 351 (490)
Q Consensus 282 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~ 351 (490)
.+..+...+...|++++|+..|+++.+ |+ ...+..++.+|.+.|++++|+..|+++.+. .|+. ..+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence 344456667777777777777777654 32 235666667777777777777777777763 2321 13333
Q ss_pred HHHHhcC------------------CCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCC
Q 011249 352 VLTACSH------------------GGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCD 413 (490)
Q Consensus 352 l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 413 (490)
+..++.. .|++++|...|+++.+. .|-+............ .. ..+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~----~~------~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF----LK------DRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH----HH------HHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH----HH------HHH-----
Confidence 3333332 34555555555555541 2222222211110000 00 000
Q ss_pred hhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCcchHHHHHHHhhhcccccC
Q 011249 414 AGTWGALLGACKVHVNAELGEIAARHLLELGPEKT---GNSALLANIYASMGKWKDSEIVKMMISETEKKKS 482 (490)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 482 (490)
......+...+...|++++|+..|+++++..|+++ .++..++.++.+.|++++|.+.++.+...++...
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 00113456678899999999999999999999976 5789999999999999999999999887766443
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.27 E-value=9.2e-12 Score=99.00 Aligned_cols=142 Identities=6% Similarity=-0.128 Sum_probs=100.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcC
Q 011249 318 ITAFADHGKSQEALDMFLKMRNEGIEPNQ-VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSG 396 (490)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 396 (490)
...+...|++++|+..++.... ..|+. ..+..+...|...|++++|++.|+++.+. .+.+...|..+..+|...|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 3444556677777777776654 23332 24556677777788888888888887763 3445677777888888888
Q ss_pred ChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHH-HHHHHhcCCCCCchHHHHHHHHHhcCC
Q 011249 397 QLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIA-ARHLLELGPEKTGNSALLANIYASMGK 463 (490)
Q Consensus 397 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 463 (490)
++++|+..|++.. .+.++..+..+...+...|++++|.+. ++++++++|+++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888887765 344567788888888888888765554 588888888888888888888877775
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.27 E-value=1.5e-10 Score=101.58 Aligned_cols=185 Identities=7% Similarity=-0.047 Sum_probs=120.5
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcccC--C-C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc-HHHH
Q 011249 278 RTNYVSNALIHMHSKCGYLDLAWREFSRIKN--K-D---VISYSSMITAFADHGKSQEALDMFLKMRNEGI-EPN-QVTF 349 (490)
Q Consensus 278 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~-~~~~ 349 (490)
.+...+..+...+.+.|++++|+..|+++.+ | + ...+..+..+|...|++++|...|++..+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3445555566677777777777777777654 2 2 45566666777777777777777777776421 112 2345
Q ss_pred HHHHHHhcC--------CCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHHHH
Q 011249 350 IGVLTACSH--------GGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALL 421 (490)
Q Consensus 350 ~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 421 (490)
..+..++.. .|++++|...|+++.+. .|.+......+.......++ ....+..+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~---------------~~~~~~~la 155 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAK---------------LARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 555666665 67777777777777663 22222222221111100000 011245677
Q ss_pred HHHhhhCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhc----------CCcchHHHHHHHhhhccc
Q 011249 422 GACKVHVNAELGEIAARHLLELGPEKT---GNSALLANIYASM----------GKWKDSEIVKMMISETEK 479 (490)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 479 (490)
..+...|++++|+..|+++++..|+++ .++..++.+|... |++++|...++++.+..+
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 889999999999999999999999854 5888999999877 889999999999987543
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.27 E-value=1.7e-10 Score=102.31 Aligned_cols=162 Identities=13% Similarity=0.006 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC
Q 011249 282 VSNALIHMHSKCGYLDLAWREFSRIKN-------K----DVISYSSMITAFADHGKSQEALDMFLKMRNE------GIEP 344 (490)
Q Consensus 282 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p 344 (490)
++..+..+|...|++++|...|++..+ + ...++..+...+...|++++|...++++.+. +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 344444444445555554444444322 1 1345566666777777777777777776653 1133
Q ss_pred c-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHc------CCCC-CchHHHHHHHHHhhcCC------hHHHHHHHHhcc-
Q 011249 345 N-QVTFIGVLTACSHGGLVEDGCKQFELMTRVF------GIKP-LTEHLTCMVDLLGRSGQ------LEKAHSLIMDYK- 409 (490)
Q Consensus 345 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~- 409 (490)
+ ..++..+...+...|++++|...++++.+.. ...+ ....+..+...+...+. +.++...++...
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 2 3466777777778888888888887776531 1122 23333333333333332 344444444444
Q ss_pred CCC-ChhhHHHHHHHHhhhCChHHHHHHHHHHHhc
Q 011249 410 DFC-DAGTWGALLGACKVHVNAELGEIAARHLLEL 443 (490)
Q Consensus 410 ~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (490)
..| ...++..+...+...|++++|...++++++.
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 3457788889999999999999999998875
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.25 E-value=1.2e-10 Score=90.33 Aligned_cols=126 Identities=15% Similarity=0.093 Sum_probs=74.5
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhC
Q 011249 351 GVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHV 428 (490)
Q Consensus 351 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 428 (490)
.+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|..+++++. .+.+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 3344444445555555555555442 12233444445555555555555555555443 2334455566666667777
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcc
Q 011249 429 NAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 429 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 478 (490)
++++|.+.++++.+..|.++..+..++.++.+.|++++|.+.++++.+.+
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 77777777777777777777777777777777777777777777666543
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.23 E-value=6e-11 Score=118.83 Aligned_cols=168 Identities=10% Similarity=-0.093 Sum_probs=108.7
Q ss_pred HhcCChHHHHHHHhccc--------C---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcC
Q 011249 291 SKCGYLDLAWREFSRIK--------N---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSH 358 (490)
Q Consensus 291 ~~~~~~~~A~~~~~~~~--------~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 358 (490)
...|++++|++.+++.. + .+...+..+..++...|++++|+..|+++.+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 55667777777776655 2 34556666666777777777777777777663 33 44566666666777
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHH
Q 011249 359 GGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIA 436 (490)
Q Consensus 359 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 436 (490)
.|++++|...|+++.+. .+.+...+..+..+|.+.|++++ ++.|++.. .+.+...|..+..++...|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777662 33345666667777777777777 77776655 344556667777777777777777777
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCC
Q 011249 437 ARHLLELGPEKTGNSALLANIYASMGK 463 (490)
Q Consensus 437 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 463 (490)
|+++++.+|+++.++..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 777777777777777777777655444
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.21 E-value=2.8e-11 Score=96.15 Aligned_cols=126 Identities=12% Similarity=-0.020 Sum_probs=104.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCC
Q 011249 352 VLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVN 429 (490)
Q Consensus 352 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 429 (490)
|...+...|++++|+..++.... ..+.+...+..+...|.+.|++++|++.|++.. .+.++.+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 45567778899999999988865 222235566678999999999999999999877 55678899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHH-HHHhhhccc
Q 011249 430 AELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIV-KMMISETEK 479 (490)
Q Consensus 430 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~ 479 (490)
+++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999987765 588776544
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.19 E-value=4.9e-10 Score=99.66 Aligned_cols=175 Identities=9% Similarity=-0.109 Sum_probs=140.1
Q ss_pred HHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011249 297 DLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRV 375 (490)
Q Consensus 297 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 375 (490)
+.....+......+...+..+...+...|++++|...|+++.+. .| +...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 34444555555455667777888889999999999999999885 45 4567888888999999999999999988763
Q ss_pred cCCCCCchHHH-HHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC--Cch
Q 011249 376 FGIKPLTEHLT-CMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEK--TGN 450 (490)
Q Consensus 376 ~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 450 (490)
.|+..... .....+...++.++|...+++.. .+.+...+..+...+...|++++|+..++++++.+|++ ..+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 34433322 23334667788888998888776 55677899999999999999999999999999999988 889
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 451 SALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
+..++.++...|+.++|...+++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999987653
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.19 E-value=1.7e-09 Score=91.36 Aligned_cols=172 Identities=8% Similarity=-0.080 Sum_probs=125.7
Q ss_pred HHHHHhcccC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCC----ChHHHHHHHHHHH
Q 011249 299 AWREFSRIKN-KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGG----LVEDGCKQFELMT 373 (490)
Q Consensus 299 A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~ 373 (490)
|.+.|++..+ .++..+..+...|...+++++|...|++..+.| +...+..+...|.. + +.++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3444444433 466677777777777788888888888887754 45566666666766 5 7888888888886
Q ss_pred HHcCCCCCchHHHHHHHHHhh----cCChHHHHHHHHhccCCCC----hhhHHHHHHHHhh----hCChHHHHHHHHHHH
Q 011249 374 RVFGIKPLTEHLTCMVDLLGR----SGQLEKAHSLIMDYKDFCD----AGTWGALLGACKV----HVNAELGEIAARHLL 441 (490)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 441 (490)
+. .++..+..|..+|.. .+++++|.++|++.....+ +..+..|...|.. .+++++|++.|+++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 62 355666777777776 7788888888887763333 6777788888877 778889999999888
Q ss_pred hcCCCCCchHHHHHHHHHhc-C-----CcchHHHHHHHhhhccc
Q 011249 442 ELGPEKTGNSALLANIYASM-G-----KWKDSEIVKMMISETEK 479 (490)
Q Consensus 442 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 479 (490)
+. |.++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87 66677888888888754 3 78888888888877764
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=1.1e-09 Score=84.74 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Q 011249 313 SYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLL 392 (490)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 392 (490)
.|..++..+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++... .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46667777888888888888888887753 235567777777788888888888888888773 344566777888888
Q ss_pred hhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 393 GRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 393 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
...|++++|.+.++++. .+.+...+..++..+...|++++|...++++.+.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88899999988887766 3445677888888889999999999999999888876
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.13 E-value=1.2e-09 Score=98.30 Aligned_cols=219 Identities=12% Similarity=-0.003 Sum_probs=145.2
Q ss_pred cCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 011249 223 NGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWRE 302 (490)
Q Consensus 223 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 302 (490)
.|++++|.+++++..+... .. + +...++++.|...|..+ +..|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4677788888877765311 11 0 11146677777666654 3456667777777777
Q ss_pred HhcccC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCc--HHHHHHHHHHhcCCCChHHHHHH
Q 011249 303 FSRIKN-----KD----VISYSSMITAFADHGKSQEALDMFLKMRNEG---IEPN--QVTFIGVLTACSHGGLVEDGCKQ 368 (490)
Q Consensus 303 ~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 368 (490)
|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 766543 11 3467778888888888988888888876521 1222 2467777888888 999999999
Q ss_pred HHHHHHHcCCCCC----chHHHHHHHHHhhcCChHHHHHHHHhcc-C---CCC----hhhHHHHHHHHhhhCChHHHHHH
Q 011249 369 FELMTRVFGIKPL----TEHLTCMVDLLGRSGQLEKAHSLIMDYK-D---FCD----AGTWGALLGACKVHVNAELGEIA 436 (490)
Q Consensus 369 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~g~~~~a~~~ 436 (490)
+++..+...-..+ ..++..+..+|.+.|++++|+..|++.. . .+. ...+..++.++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9888763211111 4567788889999999999999988766 1 111 22556666677778999999999
Q ss_pred HHHHHhcCCCCCch-----HHHHHHHHHhcCCcchHHH
Q 011249 437 ARHLLELGPEKTGN-----SALLANIYASMGKWKDSEI 469 (490)
Q Consensus 437 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 469 (490)
|++++ ..|..... ...++.++ ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 88875543 33445444 4566555554
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.13 E-value=5.5e-10 Score=85.55 Aligned_cols=114 Identities=9% Similarity=-0.065 Sum_probs=84.0
Q ss_pred CCCcH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHH
Q 011249 342 IEPNQ-VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWG 418 (490)
Q Consensus 342 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 418 (490)
+.|+. ..+......|.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..+++.. .+.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 44543 35666777777788888888888877762 34456677777778888888888888877665 445667777
Q ss_pred HHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 011249 419 ALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANI 457 (490)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 457 (490)
.+..++...|++++|++.|+++++++|+++.++..|+.+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888888888888888888777777654
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.13 E-value=5.9e-10 Score=109.72 Aligned_cols=159 Identities=9% Similarity=-0.036 Sum_probs=125.0
Q ss_pred cCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHH
Q 011249 293 CGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQ 368 (490)
Q Consensus 293 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 368 (490)
.|++++|.+.|++..+ .+...|..+...+...|++++|...+++..+. .| +...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998876 35778999999999999999999999999984 44 466888899999999999999999
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhh---CChHHHHHHHHHHHhc
Q 011249 369 FELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVH---VNAELGEIAARHLLEL 443 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 443 (490)
+++..+. .+.+...+..+..+|.+.|++++|.+.+++.. .+.+...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999884 34557788899999999999999999998876 445677888999999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 011249 444 GPEKTGNSALLA 455 (490)
Q Consensus 444 ~p~~~~~~~~l~ 455 (490)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988887776
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.12 E-value=2.2e-10 Score=90.50 Aligned_cols=98 Identities=8% Similarity=0.010 Sum_probs=80.7
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 011249 382 TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYA 459 (490)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 459 (490)
...+..+...+.+.|++++|...|++.. .+.++..|..+..++...|++++|+..|+++++++|+++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 4566677778888888888888887776 45567788888888888888888888888888888888888888888888
Q ss_pred hcCCcchHHHHHHHhhhccc
Q 011249 460 SMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 460 ~~g~~~~A~~~~~~~~~~~~ 479 (490)
+.|++++|...|++..+...
T Consensus 116 ~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 88888888888888877543
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.12 E-value=5.5e-10 Score=91.46 Aligned_cols=155 Identities=8% Similarity=-0.041 Sum_probs=92.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHH-Hhh
Q 011249 317 MITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDL-LGR 394 (490)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 394 (490)
+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++++... .|++..+..+... +..
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence 333444455555555555544432 22 2234444444555555555555555554432 1122221111111 111
Q ss_pred cCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCcchHHHH
Q 011249 395 SGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEK--TGNSALLANIYASMGKWKDSEIV 470 (490)
Q Consensus 395 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~ 470 (490)
.+...+|...+++.. .+.+...+..+..++...|++++|+..|+++++.+|+. +.++..++.++...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 122234566665554 34467788888888999999999999999999999875 55889999999999999999999
Q ss_pred HHHhhh
Q 011249 471 KMMISE 476 (490)
Q Consensus 471 ~~~~~~ 476 (490)
+++...
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.11 E-value=3.3e-09 Score=106.25 Aligned_cols=168 Identities=8% Similarity=-0.063 Sum_probs=123.6
Q ss_pred hccCChHHHHHHHHHHH--------hcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhc
Q 011249 256 TQLGDVEMAAILAKHVD--------EGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADH 324 (490)
Q Consensus 256 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 324 (490)
...|++++|...++++. +.. +.+...+..+..++...|++++|+..|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788888888888877 433 55667777788888888888888888887765 3667788888888888
Q ss_pred CChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHH
Q 011249 325 GKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHS 403 (490)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 403 (490)
|++++|+..|+++.+. .| +...+..+..++...|++++ ...|+++.+. .+.+...+..+..++.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888874 44 34577777788888888888 8888888773 34456677788888888888888888
Q ss_pred HHHhcc-CCC-ChhhHHHHHHHHhhhCC
Q 011249 404 LIMDYK-DFC-DAGTWGALLGACKVHVN 429 (490)
Q Consensus 404 ~~~~~~-~~~-~~~~~~~l~~~~~~~g~ 429 (490)
.|++.. ..| +...+..+..++...++
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888876 334 34566667766655444
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.09 E-value=1.1e-09 Score=92.29 Aligned_cols=160 Identities=9% Similarity=-0.040 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccC--C-ChhHHHH----------------HHHHHHhcCChHHHHHHHHHHHHcCC
Q 011249 282 VSNALIHMHSKCGYLDLAWREFSRIKN--K-DVISYSS----------------MITAFADHGKSQEALDMFLKMRNEGI 342 (490)
Q Consensus 282 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~ 342 (490)
........+...|++++|+..|++..+ | ++..|.. +..+|...|++++|+..|++.++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 344456677889999999999998876 3 3456666 888899999999999999999885
Q ss_pred CC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCC--hHHHHHHHHhccCCCCh--hhH
Q 011249 343 EP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQ--LEKAHSLIMDYKDFCDA--GTW 417 (490)
Q Consensus 343 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~ 417 (490)
.| +...+..+..++...|++++|...|+++.+. .|.+...+..+..+|...|+ .+.+...++... .|++ ..+
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~ 160 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYAR 160 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHH
Confidence 45 5568888888899999999999999999873 44557778888888766554 445566666665 3333 234
Q ss_pred HHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 418 GALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 418 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
.....++...|++++|+..|++++++.|+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 44556677788999999999999999997
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.08 E-value=1.7e-09 Score=91.11 Aligned_cols=123 Identities=7% Similarity=-0.104 Sum_probs=51.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCC
Q 011249 352 VLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVN 429 (490)
Q Consensus 352 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 429 (490)
+..++...|++++|...+++..+. .|.+...+..+..++...|++++|+..|++.. .+.+...+..+..++...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 444445555555555555555442 22234444445555555555555555554443 22334444444444433322
Q ss_pred --hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 430 --AELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 430 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
.+.+...++++....|. ...+..++.++...|++++|+..+++..+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 22333333333221111 112333444444455555555555544443
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.07 E-value=2.6e-09 Score=105.12 Aligned_cols=148 Identities=7% Similarity=-0.053 Sum_probs=107.6
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 011249 258 LGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMF 334 (490)
Q Consensus 258 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 334 (490)
.|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...+..+..+|...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478889999999887765 55677888889999999999999999988776 35678888899999999999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhc---CChHHHHHHHHhcc
Q 011249 335 LKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRS---GQLEKAHSLIMDYK 409 (490)
Q Consensus 335 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 409 (490)
++..+.. +.+...+..+..++...|++++|.+.+++..+. .+.+...+..+..++... |++++|.+.+++..
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9988852 234568888888899999999999999998873 344567788888899988 99999999998776
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.06 E-value=1.7e-09 Score=97.34 Aligned_cols=197 Identities=11% Similarity=-0.000 Sum_probs=150.4
Q ss_pred ccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 011249 257 QLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLK 336 (490)
Q Consensus 257 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 336 (490)
..|++++|..++++..+... .. .+...++++.|...|.+ .+..|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 35778899999988876531 11 01114788888887765 35678889999999999998
Q ss_pred HHHcC--C-CC-c-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCC--C--CchHHHHHHHHHhhcCChHHHHHHHHh
Q 011249 337 MRNEG--I-EP-N-QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIK--P--LTEHLTCMVDLLGRSGQLEKAHSLIMD 407 (490)
Q Consensus 337 ~~~~~--~-~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 407 (490)
..+.. . .+ . ..+|..+...|...|++++|...+++..+.+.-. + ...++..+..+|.. |++++|++.|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 87631 1 11 1 3478888899999999999999999987642111 1 14567788899988 999999999987
Q ss_pred cc-CCC-------ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhcCCcchHHHHHHH
Q 011249 408 YK-DFC-------DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKT------GNSALLANIYASMGKWKDSEIVKMM 473 (490)
Q Consensus 408 ~~-~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (490)
.. ..+ ...++..+...+...|++++|++.|+++++..|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 76 111 145788889999999999999999999999876543 3677788888899999999999999
Q ss_pred hh
Q 011249 474 IS 475 (490)
Q Consensus 474 ~~ 475 (490)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.05 E-value=2.4e-07 Score=82.00 Aligned_cols=231 Identities=6% Similarity=-0.045 Sum_probs=153.1
Q ss_pred HhcCC-hHHHHHHHHHHHHcCcccChhhHHHHHHHHhccC--ChHHHHHHHHHHHhcCCCCchhHHHHHHHHH----Hhc
Q 011249 221 VQNGY-AKAAIEMYKVMRQENVRISEVAMVGAISACTQLG--DVEMAAILAKHVDEGCCDRTNYVSNALIHMH----SKC 293 (490)
Q Consensus 221 ~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 293 (490)
.+.|. .++|+++++.+...+.. +...++.-..++...| +++++..+++.+.... |.+..+|+.-..++ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 34444 46888888888876422 4455666666677777 8888888888888776 45555555443333 344
Q ss_pred ---CChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCC----
Q 011249 294 ---GYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQ--EALDMFLKMRNEGIEPNQVTFIGVLTACSHGGL---- 361 (490)
Q Consensus 294 ---~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---- 361 (490)
+++++++.+++++.+ ++..+|+.-.-++.+.|.++ ++++.++++++.. .-|...|+.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 677888888877765 45666766666667777777 8888888888753 2245556555555555555
Q ss_pred --hHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHH-HHHHHHhccC-----CCChhhHHHHHHHHhhhCChHHH
Q 011249 362 --VEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEK-AHSLIMDYKD-----FCDAGTWGALLGACKVHVNAELG 433 (490)
Q Consensus 362 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a 433 (490)
++++++.++++.. ..+-+...|+.+...+.+.|+..+ +..+..++.. ..++..+..++..+.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 7777777777776 345567777777777777776444 4455565541 33556777777777777888888
Q ss_pred HHHHHHHHh-cCCCCCchHHHHHH
Q 011249 434 EIAARHLLE-LGPEKTGNSALLAN 456 (490)
Q Consensus 434 ~~~~~~~~~-~~p~~~~~~~~l~~ 456 (490)
+++++.+.+ .+|.....+...+.
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHHh
Confidence 888888775 67776666665543
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.05 E-value=8.4e-09 Score=88.10 Aligned_cols=186 Identities=13% Similarity=0.008 Sum_probs=134.2
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHhcCChHHHHHHHhcccC--CCh----hHHH
Q 011249 244 SEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDR--TNYVSNALIHMHSKCGYLDLAWREFSRIKN--KDV----ISYS 315 (490)
Q Consensus 244 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~ 315 (490)
+...+..+...+...|++++|...|+.+.+..... ....+..++.+|.+.|++++|+..|+++.+ |+. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44566677788999999999999999998865221 235677789999999999999999999875 332 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHhcCCCChHHHHHHHHHHHHHc
Q 011249 316 SMITAFAD------------------HGKSQEALDMFLKMRNEGIEPNQV-TFIGVLTACSHGGLVEDGCKQFELMTRVF 376 (490)
Q Consensus 316 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 376 (490)
.+..++.. .|++++|...|+++++. .|+.. ....... ...+...+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~~-- 148 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLAK-- 148 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHHH--
Confidence 55656554 57899999999999984 45432 2211111 0011111111
Q ss_pred CCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCCC-h---hhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCch
Q 011249 377 GIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCD-A---GTWGALLGACKVHVNAELGEIAARHLLELGPEKTGN 450 (490)
Q Consensus 377 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 450 (490)
....+...|.+.|++++|+..|+++. ..|+ + ..+..+..++.+.|++++|++.++++....|++...
T Consensus 149 -------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 149 -------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 22356788899999999999998877 3343 2 467888899999999999999999999998887653
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.05 E-value=1.6e-09 Score=83.00 Aligned_cols=102 Identities=10% Similarity=0.004 Sum_probs=91.7
Q ss_pred CCCC-chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHH
Q 011249 378 IKPL-TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALL 454 (490)
Q Consensus 378 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 454 (490)
+.|+ ...+......|.+.|++++|++.|++.. .+.+...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444 4567778899999999999999998876 556788999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccc
Q 011249 455 ANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
+.++...|++++|++.+++..+..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999987654
No 114
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.03 E-value=4.8e-10 Score=88.67 Aligned_cols=101 Identities=11% Similarity=-0.092 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHh
Q 011249 348 TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACK 425 (490)
Q Consensus 348 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 425 (490)
.+..+...+...|++++|...|+++... .+.+...+..+..+|...|++++|+..|++.. .+.++..+..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4444455555555566665555555542 23344455555555555555555555555544 2334445555555555
Q ss_pred hhCChHHHHHHHHHHHhcCCCCCch
Q 011249 426 VHVNAELGEIAARHLLELGPEKTGN 450 (490)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~p~~~~~ 450 (490)
..|++++|++.|+++++..|+++..
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 5555555555555555555555443
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.03 E-value=4.8e-09 Score=88.74 Aligned_cols=132 Identities=13% Similarity=-0.040 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 011249 311 VISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVD 390 (490)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 390 (490)
...+..+...+...|++++|...|++.. .|+...+..+...+...|++++|...+++..+. .+.+...+..+..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 3455667778889999999999998773 567888888999999999999999999999873 3556778888999
Q ss_pred HHhhcCChHHHHHHHHhcc--CCCCh----------------hhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCC
Q 011249 391 LLGRSGQLEKAHSLIMDYK--DFCDA----------------GTWGALLGACKVHVNAELGEIAARHLLELGPEKT 448 (490)
Q Consensus 391 ~~~~~g~~~~A~~~~~~~~--~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 448 (490)
+|...|++++|.+.|++.. .+.+. ..+..+..++...|++++|.+.++++++..|++.
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 9999999999999998776 22222 6778888889999999999999999999998863
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.02 E-value=7.5e-08 Score=85.22 Aligned_cols=215 Identities=12% Similarity=-0.003 Sum_probs=171.3
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC--ChHHHHHHHhcccC---CChhHHHHHHHHH----Hhc---C
Q 011249 258 LGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCG--YLDLAWREFSRIKN---KDVISYSSMITAF----ADH---G 325 (490)
Q Consensus 258 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---~ 325 (490)
....++|..+++.++..+ |.+..+++.-..++...| +++++++.++.+.. .+..+|+.-...+ ... +
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 344568999999999887 666777888788888888 99999999999876 3556666655554 455 7
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCC------
Q 011249 326 KSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVE--DGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQ------ 397 (490)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 397 (490)
++++++.+++++.+.. +-+...|..-...+.+.|.++ ++++.++++.+. .+-+...|+.-...+.+.|+
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhh
Confidence 8999999999999852 335567776666667778887 999999999984 45567777777777777776
Q ss_pred hHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCCh-HHHHHHHHHHHhcC---CCCCchHHHHHHHHHhcCCcchHHHHH
Q 011249 398 LEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNA-ELGEIAARHLLELG---PEKTGNSALLANIYASMGKWKDSEIVK 471 (490)
Q Consensus 398 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (490)
++++++.++++. .+.|...|+.+...+...|.. +....+.+++.+.+ |.++.++..++.+|.+.|+.++|.+++
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 889999998776 566888999888888888874 44667888888776 888999999999999999999999999
Q ss_pred HHhhh
Q 011249 472 MMISE 476 (490)
Q Consensus 472 ~~~~~ 476 (490)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.02 E-value=2.3e-08 Score=89.23 Aligned_cols=165 Identities=8% Similarity=-0.106 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-H----HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC----c
Q 011249 312 ISYSSMITAFADHGKSQEALDMFLKMRNEGIEPN-Q----VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL----T 382 (490)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~ 382 (490)
..+...+..+...|++++|...+++..+...... . ..+..+...+...|++++|...+++..+......+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445566778889999999999988887432211 1 12344556677889999999999988753111112 3
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHhcc----CCCC-----hhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC------C
Q 011249 383 EHLTCMVDLLGRSGQLEKAHSLIMDYK----DFCD-----AGTWGALLGACKVHVNAELGEIAARHLLELGPE------K 447 (490)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~ 447 (490)
.+++.+...|...|++++|...|++.. ..|+ ..++..+...|...|++++|+..++++++..++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 477888999999999999999997765 1222 257888889999999999999999999875432 1
Q ss_pred CchHHHHHHHHHhcCCcchH-HHHHHHhhh
Q 011249 448 TGNSALLANIYASMGKWKDS-EIVKMMISE 476 (490)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 476 (490)
..+|..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 777776653
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.01 E-value=2.3e-08 Score=89.28 Aligned_cols=162 Identities=9% Similarity=-0.112 Sum_probs=123.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHH----HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC----chHHH
Q 011249 316 SMITAFADHGKSQEALDMFLKMRNEG-IEPNQV----TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL----TEHLT 386 (490)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 386 (490)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++++.......++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888999999999999988732 223322 3334666778888999999999999873122222 22688
Q ss_pred HHHHHHhhcCChHHHHHHHHhcc-----C-C--C-ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC------CchH
Q 011249 387 CMVDLLGRSGQLEKAHSLIMDYK-----D-F--C-DAGTWGALLGACKVHVNAELGEIAARHLLELGPEK------TGNS 451 (490)
Q Consensus 387 ~l~~~~~~~g~~~~A~~~~~~~~-----~-~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 451 (490)
.+..+|...|++++|...|+++. . . + ...++..+...|...|++++|++.++++++..+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999998766 1 1 1 12377888899999999999999999999865332 5689
Q ss_pred HHHHHHHHhcCC-cchHHHHHHHhhhc
Q 011249 452 ALLANIYASMGK-WKDSEIVKMMISET 477 (490)
Q Consensus 452 ~~l~~~~~~~g~-~~~A~~~~~~~~~~ 477 (490)
..++.+|.+.|+ +++|.+.+++....
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999995 59999999887643
No 119
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=8.9e-09 Score=84.14 Aligned_cols=151 Identities=11% Similarity=0.015 Sum_probs=63.8
Q ss_pred HHHHHHhcCChhHHHHHHhhcCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHH-HhccCC
Q 011249 185 MIAGYGKCGEVREAKKVFDEISE---PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISA-CTQLGD 260 (490)
Q Consensus 185 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~ 260 (490)
....+...|++++|+..|++..+ .+...+..+..++...|++++|+..+++..... |+......+... +...++
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcc
Confidence 33444444444444444444443 233444444444445555555555444443321 122111111101 011111
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--CC---hhHHHHHHHHHHhcCChHHHHHHHH
Q 011249 261 VEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--KD---VISYSSMITAFADHGKSQEALDMFL 335 (490)
Q Consensus 261 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~a~~~~~ 335 (490)
...+...+++..+.. |.+...+..+..++...|++++|...|+++.+ |+ ...+..+..++...|+.++|...|+
T Consensus 90 ~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 90 ESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp SCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred cchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 222344444444433 33344444455555555555555555554433 11 2244455555555555555555555
Q ss_pred HHH
Q 011249 336 KMR 338 (490)
Q Consensus 336 ~~~ 338 (490)
+..
T Consensus 169 ~al 171 (176)
T 2r5s_A 169 RQL 171 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 120
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.00 E-value=2.4e-08 Score=88.65 Aligned_cols=161 Identities=10% Similarity=-0.049 Sum_probs=102.0
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC--CChhHHHHH-HHH
Q 011249 244 SEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN--KDVISYSSM-ITA 320 (490)
Q Consensus 244 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l-~~~ 320 (490)
+...+..+...+...|++++|...++++.+.. |.+...+..+..++...|++++|...++++.. |+....... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34555666666777777777777777777665 55666677777777777777777777777765 433322222 223
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChH
Q 011249 321 FADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLE 399 (490)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 399 (490)
+...++.+.|...+++..+. .| +...+..+...+...|++++|...+.++.+...-..+...+..++..+...|+.+
T Consensus 195 l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 55566667777777777664 33 4456666677777777777777777777664111112455666666666667666
Q ss_pred HHHHHHHh
Q 011249 400 KAHSLIMD 407 (490)
Q Consensus 400 ~A~~~~~~ 407 (490)
+|...|++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 66666654
No 121
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.99 E-value=9.9e-08 Score=91.29 Aligned_cols=77 Identities=14% Similarity=0.018 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHH
Q 011249 361 LVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHL 440 (490)
Q Consensus 361 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (490)
+.+.|..+|+...+.+ +.++..+...++...+.|+.+.|..+|+.+. .....|...+..-...|+.+.+..+++++
T Consensus 335 d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3555555555555432 1122333334444445555555555555542 23344444444444445555555555554
Q ss_pred H
Q 011249 441 L 441 (490)
Q Consensus 441 ~ 441 (490)
.
T Consensus 411 ~ 411 (493)
T 2uy1_A 411 M 411 (493)
T ss_dssp H
T ss_pred H
Confidence 4
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.97 E-value=7.8e-09 Score=83.40 Aligned_cols=127 Identities=5% Similarity=-0.159 Sum_probs=97.0
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHh
Q 011249 348 TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACK 425 (490)
Q Consensus 348 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 425 (490)
.+..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|.+.+++.. .+.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666677777888888888777763 34456677777788888888888888887665 3446677888888888
Q ss_pred hhCChHHHHHHHHHHHhcCCCCCchHHHHHHH--HHhcCCcchHHHHHHHhhh
Q 011249 426 VHVNAELGEIAARHLLELGPEKTGNSALLANI--YASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 476 (490)
..|++++|...++++.+..|.++..+..+..+ +...|++++|++.+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999888877554444 7788999999998887654
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.97 E-value=1.7e-09 Score=95.75 Aligned_cols=189 Identities=9% Similarity=-0.072 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhc
Q 011249 282 VSNALIHMHSKCGYLDLAWREFSRIKN--K-DVISYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACS 357 (490)
Q Consensus 282 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 357 (490)
.+..+...+...|++++|+..|++..+ | +...|..+..+|...|++++|...+++..+. .| +...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 344444445555555555555554432 2 3445555555555566666666666655542 33 3345555555566
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHH
Q 011249 358 HGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAA 437 (490)
Q Consensus 358 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (490)
..|++++|...++++.+... .+...+...+....+..+...... ......+.+......+. .+ ..|+.++|++.+
T Consensus 84 ~~g~~~~A~~~~~~al~l~p--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~-~l-~~~~~~~A~~~~ 158 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAK--EQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLT-RL-IAAERERELEEC 158 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHH--HTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHH-HH-HHHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHH-HH-HHHHHHHHHHHH
Confidence 66666666666665554210 000011111111111111111111 11112233333333332 22 368888888888
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhc-CCcchHHHHHHHhhhc
Q 011249 438 RHLLELGPEKTGNSALLANIYASM-GKWKDSEIVKMMISET 477 (490)
Q Consensus 438 ~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 477 (490)
+++.+.+|++......+...+.+. +++++|.++|+++.+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888888777777777777666 6788888888877654
No 124
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=1.7e-08 Score=85.15 Aligned_cols=158 Identities=11% Similarity=-0.031 Sum_probs=78.9
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccC----ChHHHHHHHHHHHhcCCCCchhHH
Q 011249 208 PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLG----DVEMAAILAKHVDEGCCDRTNYVS 283 (490)
Q Consensus 208 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~ 283 (490)
.++..+..+...|...+++++|+++|++..+.| +...+..+...+.. + ++++|..+|++..+.+ ++..+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 344445555555555555555555555555433 33344444444444 3 5555555555554433 33344
Q ss_pred HHHHHHHHh----cCChHHHHHHHhcccCCC-----hhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHHHHH
Q 011249 284 NALIHMHSK----CGYLDLAWREFSRIKNKD-----VISYSSMITAFAD----HGKSQEALDMFLKMRNEGIEPNQVTFI 350 (490)
Q Consensus 284 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~ 350 (490)
..|..+|.. .+++++|+.+|++..+.+ +..+..|...|.. .+++++|...|++..+. ..+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 444555544 455555555555555421 3455555555555 55566666666666553 12223344
Q ss_pred HHHHHhcCC------CChHHHHHHHHHHHH
Q 011249 351 GVLTACSHG------GLVEDGCKQFELMTR 374 (490)
Q Consensus 351 ~l~~~~~~~------g~~~~a~~~~~~~~~ 374 (490)
.+...|... .+.++|...|++..+
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 444444321 256666666666655
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.97 E-value=2.3e-09 Score=87.75 Aligned_cols=128 Identities=9% Similarity=0.046 Sum_probs=82.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHH-HhhcCCh-
Q 011249 321 FADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDL-LGRSGQL- 398 (490)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 398 (490)
+...|++++|...+++..+.. +.+...+..+...|...|++++|...++++.+. .+.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 344567777777777776642 234556777777777777777777777777663 23345566666666 6677776
Q ss_pred -HHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchH
Q 011249 399 -EKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNS 451 (490)
Q Consensus 399 -~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 451 (490)
++|...+++.. .+.+...+..+...+...|++++|...++++++..|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 77777776665 334456666777777777777777777777777777765533
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.97 E-value=1.1e-08 Score=78.71 Aligned_cols=118 Identities=9% Similarity=-0.077 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHH
Q 011249 346 QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGA 423 (490)
Q Consensus 346 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 423 (490)
...+..+...+...|++++|...++++... .+.+...+..+..++...|++++|.+.+++.. .+.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 346666777777888888888888888773 34456677788888888888888888887766 34457788888889
Q ss_pred HhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcc
Q 011249 424 CKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWK 465 (490)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 465 (490)
+...|++++|...++++.+..|+++..+..++.++.+.|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999888764
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.96 E-value=1.1e-08 Score=79.06 Aligned_cols=117 Identities=6% Similarity=-0.087 Sum_probs=87.5
Q ss_pred cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHH
Q 011249 345 NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLG 422 (490)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 422 (490)
+...+..+...+...|++++|...+++..+ ..+.+...+..+..++...|++++|.+.+++.. .+.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 344666666677777777777777777765 233456666777777777777777777776665 3445677888888
Q ss_pred HHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 011249 423 ACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGK 463 (490)
Q Consensus 423 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 463 (490)
++...|++++|.+.++++.+..|.++..+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888999999999999999999888888888888877664
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.94 E-value=1.4e-08 Score=77.26 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHH
Q 011249 346 QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGA 423 (490)
Q Consensus 346 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 423 (490)
...+..+...+...|++++|...++++.+. .+.+...+..++..+...|++++|..+++++. .+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 346666777777788888888888887763 33456667777888888888888888887765 34566778888888
Q ss_pred HhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 011249 424 CKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMG 462 (490)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 462 (490)
+...|++++|...++++.+..|+++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999988888888876654
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.93 E-value=3.9e-08 Score=83.01 Aligned_cols=147 Identities=10% Similarity=-0.046 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCC
Q 011249 282 VSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGL 361 (490)
Q Consensus 282 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 361 (490)
.+..+...+...|++++|...|++...++...|..+...+...|++++|+..+++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 455678888999999999999999998899999999999999999999999999999853 3356788889999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCc----------------hHHHHHHHHHhhcCChHHHHHHHHhcc-CCCChhhHHHHHHHH
Q 011249 362 VEDGCKQFELMTRVFGIKPLT----------------EHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCDAGTWGALLGAC 424 (490)
Q Consensus 362 ~~~a~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~ 424 (490)
+++|...++++.+. .+.+. ..+..+..+|...|++++|.+.|++.. ..|+.
T Consensus 87 ~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------- 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP---------- 154 (213)
T ss_dssp HHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG----------
T ss_pred HHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc----------
Confidence 99999999999883 33333 678889999999999999999998876 34443
Q ss_pred hhhCChHHHHHHHHHHHh
Q 011249 425 KVHVNAELGEIAARHLLE 442 (490)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~ 442 (490)
..+..+.+...+.+...
T Consensus 155 -~~~~~~~a~~~~~~~~~ 171 (213)
T 1hh8_A 155 -RHSKIDKAMECVWKQKL 171 (213)
T ss_dssp -GGGHHHHHHHHHHTTCC
T ss_pred -ccchHHHHHHHHHhccc
Confidence 22445556655554433
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.92 E-value=2.7e-09 Score=83.76 Aligned_cols=99 Identities=10% Similarity=-0.092 Sum_probs=46.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhh
Q 011249 350 IGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVH 427 (490)
Q Consensus 350 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 427 (490)
..+...+...|++++|...|+++... .+.+...+..+..+|.+.|++++|+..|++.. .+.++..+..+..++...
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 33344444555555555555555441 22234444444445555555555555554443 223334444444444555
Q ss_pred CChHHHHHHHHHHHhcCCCCCch
Q 011249 428 VNAELGEIAARHLLELGPEKTGN 450 (490)
Q Consensus 428 g~~~~a~~~~~~~~~~~p~~~~~ 450 (490)
|++++|.+.|+++++..|+++..
T Consensus 100 g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 100 GDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp TCHHHHHHHHHHHHHHHHTCGGG
T ss_pred CCHHHHHHHHHHHHHhCCCCcch
Confidence 55555555555555544444443
No 131
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.92 E-value=1.2e-08 Score=75.93 Aligned_cols=100 Identities=14% Similarity=-0.016 Sum_probs=87.8
Q ss_pred CchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC--CCchHHHHHH
Q 011249 381 LTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPE--KTGNSALLAN 456 (490)
Q Consensus 381 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 456 (490)
+...+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|.+.++++++..|. ++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 45667778888999999999999998776 4456778888999999999999999999999999999 9999999999
Q ss_pred HHHhc-CCcchHHHHHHHhhhcccc
Q 011249 457 IYASM-GKWKDSEIVKMMISETEKK 480 (490)
Q Consensus 457 ~~~~~-g~~~~A~~~~~~~~~~~~~ 480 (490)
++... |++++|.+.++++.+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999999876653
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.91 E-value=5.1e-09 Score=82.73 Aligned_cols=99 Identities=15% Similarity=0.035 Sum_probs=85.4
Q ss_pred CchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 011249 381 LTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIY 458 (490)
Q Consensus 381 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 458 (490)
+...+..+...+...|++++|...|++.. .+.+...|..+..++...|++++|+..|+++++.+|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 45566778888899999999999998876 4557778888888999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHHhhhccc
Q 011249 459 ASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 459 ~~~g~~~~A~~~~~~~~~~~~ 479 (490)
...|++++|.+.+++..+...
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHHCc
Confidence 999999999999998877654
No 133
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.90 E-value=1.5e-09 Score=90.72 Aligned_cols=96 Identities=8% Similarity=-0.088 Sum_probs=75.1
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 011249 383 EHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYAS 460 (490)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 460 (490)
..+..+..+|...|++++|+..+++.. .+.+...+..+..++...|++++|++.|+++++..|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 567778888899999999999998776 455677888999999999999999999999999999999999999999999
Q ss_pred cCCcchHH-HHHHHhhhcc
Q 011249 461 MGKWKDSE-IVKMMISETE 478 (490)
Q Consensus 461 ~g~~~~A~-~~~~~~~~~~ 478 (490)
.|+.+++. ..++.|...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 99888887 5566665443
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.89 E-value=1e-08 Score=93.34 Aligned_cols=94 Identities=11% Similarity=-0.056 Sum_probs=81.7
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 011249 382 TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYA 459 (490)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 459 (490)
...+..+..+|.+.|++++|+..+++.. .+.+...+..+..++...|++++|+..|+++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3577888889999999999999998876 45577889999999999999999999999999999999999999999999
Q ss_pred hcCCcchH-HHHHHHhh
Q 011249 460 SMGKWKDS-EIVKMMIS 475 (490)
Q Consensus 460 ~~g~~~~A-~~~~~~~~ 475 (490)
+.|++++| ..++++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 44555553
No 135
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.88 E-value=3.1e-06 Score=80.90 Aligned_cols=123 Identities=7% Similarity=-0.202 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcC-ChHHHHHHHHhcc--CCCChhhHHHHHHH
Q 011249 347 VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSG-QLEKAHSLIMDYK--DFCDAGTWGALLGA 423 (490)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 423 (490)
..|...+....+.+..+.|..+|+++ .. .+.+...|...+..-...| +.+.|..+|+... .+.++..|...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN--EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT--SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC--CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 35556666665667788899999888 31 1234444543333333334 6889999997765 22334556667776
Q ss_pred HhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 424 CKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
....|+.+.|..+|+++ +.+...+...+..-...|+.+.+..+++++.+
T Consensus 364 e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77889999999999987 33566777777777778998888888877764
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.87 E-value=1e-08 Score=78.55 Aligned_cols=93 Identities=8% Similarity=-0.104 Sum_probs=51.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 011249 385 LTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMG 462 (490)
Q Consensus 385 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 462 (490)
+..+...+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..++++++.+|+++.++..++.++...|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 3444455555555555555555443 23344555555555555555555555555555555555555555555555555
Q ss_pred CcchHHHHHHHhhhc
Q 011249 463 KWKDSEIVKMMISET 477 (490)
Q Consensus 463 ~~~~A~~~~~~~~~~ 477 (490)
++++|...+++..+.
T Consensus 87 ~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 87 EYASALETLDAARTK 101 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555443
No 137
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.87 E-value=7.9e-09 Score=78.41 Aligned_cols=97 Identities=14% Similarity=-0.033 Sum_probs=84.9
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 011249 383 EHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYAS 460 (490)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 460 (490)
..+..+...+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..++++++.+|+++.++..++.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 345567788899999999999998877 455778899999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHhhhccc
Q 011249 461 MGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 461 ~g~~~~A~~~~~~~~~~~~ 479 (490)
.|++++|+..+++..+..+
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 9999999999999876544
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.87 E-value=1.7e-08 Score=79.66 Aligned_cols=104 Identities=7% Similarity=-0.096 Sum_probs=80.6
Q ss_pred CCcH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHH
Q 011249 343 EPNQ-VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGA 419 (490)
Q Consensus 343 ~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 419 (490)
.|+. ..+..+...+...|++++|...|+++... .|.++..|..+..+|...|++++|++.|++.. .+.++..|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4433 36666777778888888888888888773 44557777788888888888888888887776 4556778888
Q ss_pred HHHHHhhhCChHHHHHHHHHHHhcCCCCC
Q 011249 420 LLGACKVHVNAELGEIAARHLLELGPEKT 448 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 448 (490)
+..++...|++++|+..|+++++..|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888888999999999999988888754
No 139
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=3e-07 Score=81.98 Aligned_cols=203 Identities=9% Similarity=-0.086 Sum_probs=136.5
Q ss_pred HHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhH---HHHHHHHHHhcCChHHHHHHHhcccC
Q 011249 232 MYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYV---SNALIHMHSKCGYLDLAWREFSRIKN 308 (490)
Q Consensus 232 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~ 308 (490)
.+.++......|+..+...+...+.-.-+ .+.......+... +...+..+...|++++|...+++..+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 34444444446666666666655533211 1111111222222 22346677888999999999988765
Q ss_pred C-----C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 011249 309 K-----D----VISYSSMITAFADHGKSQEALDMFLKMRNEGIE-PN----QVTFIGVLTACSHGGLVEDGCKQFELMTR 374 (490)
Q Consensus 309 ~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 374 (490)
. + ...+..+...+...|++++|+..++++.+.... ++ ..+++.+...|...|++++|..+++++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1 113344666777788999999999999873222 22 23688888999999999999999999885
Q ss_pred HcC----CCC-CchHHHHHHHHHhhcCChHHHHHHHHhcc-------CCC-ChhhHHHHHHHHhhhCC-hHHHHHHHHHH
Q 011249 375 VFG----IKP-LTEHLTCMVDLLGRSGQLEKAHSLIMDYK-------DFC-DAGTWGALLGACKVHVN-AELGEIAARHL 440 (490)
Q Consensus 375 ~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~-~~~a~~~~~~~ 440 (490)
... ..+ ...++..+..+|.+.|++++|.+.+++.. ..+ -...|..+..++...|+ +++|.+.++++
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 321 111 13467788999999999999999997765 111 25688888899999994 69999999999
Q ss_pred Hhc
Q 011249 441 LEL 443 (490)
Q Consensus 441 ~~~ 443 (490)
+.+
T Consensus 264 l~i 266 (293)
T 3u3w_A 264 SFF 266 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.82 E-value=1.1e-07 Score=82.11 Aligned_cols=136 Identities=11% Similarity=-0.034 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC--chHHHHHHHHH
Q 011249 315 SSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL--TEHLTCMVDLL 392 (490)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 392 (490)
......+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... ..|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHH
Confidence 34455666677777777777766653 344434444444567777777777777755331 1111 23556677777
Q ss_pred hhcCChHHHHHHHHhccCCC-----ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 011249 393 GRSGQLEKAHSLIMDYKDFC-----DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLA 455 (490)
Q Consensus 393 ~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 455 (490)
.+.|++++|+..|++....| ..........++.+.|+.++|...|+++...+|+ +.+...|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 78888888888887765222 2235556666778888888888888888888887 66555554
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.82 E-value=2e-08 Score=80.96 Aligned_cols=110 Identities=13% Similarity=-0.070 Sum_probs=94.4
Q ss_pred cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHH
Q 011249 345 NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLG 422 (490)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 422 (490)
+...+..+...+...|++++|+..|++..+. .+.+...+..+..+|.+.|++++|+..|++.. .+.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4557888888899999999999999999883 34567888899999999999999999998876 4556788999999
Q ss_pred HHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 011249 423 ACKVHVNAELGEIAARHLLELGPEKTGNSALLAN 456 (490)
Q Consensus 423 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 456 (490)
++...|++++|++.|+++++++|+++..+...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999999999999986655543
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.81 E-value=3.1e-08 Score=76.96 Aligned_cols=96 Identities=11% Similarity=-0.056 Sum_probs=47.8
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 011249 382 TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYA 459 (490)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 459 (490)
...+..+...+...|++++|...|++.. .+.+...+..+..++...|++++|+..++++++.+|+++.++..++.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 3344444444555555555555554433 22234444445555555555555555555555555555555555555555
Q ss_pred hcCCcchHHHHHHHhhhc
Q 011249 460 SMGKWKDSEIVKMMISET 477 (490)
Q Consensus 460 ~~g~~~~A~~~~~~~~~~ 477 (490)
..|++++|...+++..+.
T Consensus 89 ~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 555555555555554443
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.80 E-value=2.1e-07 Score=82.89 Aligned_cols=161 Identities=9% Similarity=-0.056 Sum_probs=109.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcccC--C-Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCc--HHH
Q 011249 283 SNALIHMHSKCGYLDLAWREFSRIKN--K-DV------ISYSSMITAFADHGKSQEALDMFLKMRNEGI---EPN--QVT 348 (490)
Q Consensus 283 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~~ 348 (490)
+...+..+...|++++|.+.+++..+ + .. ..+..+...+...|++++|+..+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34456666777777777777765433 1 11 2234455567777888888888888775311 111 347
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC-----chHHHHHHHHHhhcCChHHHHHHHHhcc-CCC-------Chh
Q 011249 349 FIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL-----TEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFC-------DAG 415 (490)
Q Consensus 349 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------~~~ 415 (490)
+..+...|...|++++|...++++.+.....|+ ..++..++.+|...|++++|.+.+++.. ..+ ...
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777888888888888888888888732111222 2477788888888899999888887665 111 155
Q ss_pred hHHHHHHHHhhhCChHHH-HHHHHHHHhc
Q 011249 416 TWGALLGACKVHVNAELG-EIAARHLLEL 443 (490)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 443 (490)
++..+...+...|++++| ...++++..+
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 777888888889999999 7778887763
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.80 E-value=8.7e-08 Score=71.93 Aligned_cols=109 Identities=9% Similarity=-0.073 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHH
Q 011249 347 VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGAC 424 (490)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 424 (490)
..+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|...+++.. .+.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34445555556666666666666666552 23345555566666666666666666665554 233455666666667
Q ss_pred hhhCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 011249 425 KVHVNAELGEIAARHLLELGPEKTGNSALLANI 457 (490)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 457 (490)
...|++++|.+.++++.+.+|+++..+..++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 777777777777777777777766666665544
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.79 E-value=2.4e-08 Score=76.51 Aligned_cols=91 Identities=10% Similarity=-0.054 Sum_probs=43.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCc-------hHHHHHH
Q 011249 386 TCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTG-------NSALLAN 456 (490)
Q Consensus 386 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~ 456 (490)
..+...+.+.|++++|++.|++.. .+.+...|..+..++...|++++|++.++++++++|+++. +|..++.
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 334444445555555555554433 2233444445555555555555555555555554444332 3444444
Q ss_pred HHHhcCCcchHHHHHHHhhh
Q 011249 457 IYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 457 ~~~~~g~~~~A~~~~~~~~~ 476 (490)
++...|++++|++.+++..+
T Consensus 92 ~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 45555555555555554443
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.78 E-value=5.9e-08 Score=74.17 Aligned_cols=111 Identities=6% Similarity=-0.199 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHH
Q 011249 347 VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGAC 424 (490)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 424 (490)
..+......+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|+..+++.. .+.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45566666777788888888888888763 34456777788888888888888888887766 445677888888888
Q ss_pred hhhCChHHHHHHHHHHHhcC------CCCCchHHHHHHHHH
Q 011249 425 KVHVNAELGEIAARHLLELG------PEKTGNSALLANIYA 459 (490)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 459 (490)
...|++++|+..++++++.+ |.++.+...+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999988 887777777765543
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.77 E-value=6.8e-08 Score=78.90 Aligned_cols=123 Identities=9% Similarity=-0.042 Sum_probs=93.7
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHH-HhhhCCh--
Q 011249 356 CSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGA-CKVHVNA-- 430 (490)
Q Consensus 356 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~-~~~~g~~-- 430 (490)
+...|++++|...+++..+. .+.+...+..+..+|...|++++|...|++.. .+.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45677888888888888773 34556778888888888888888888887766 34466677777777 6778887
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccc
Q 011249 431 ELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKK 480 (490)
Q Consensus 431 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 480 (490)
++|+..++++++.+|+++.++..++.++...|++++|...++++.+..+.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 88888888888888888888888888888888888888888888776543
No 148
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.77 E-value=5e-08 Score=76.43 Aligned_cols=98 Identities=12% Similarity=-0.046 Sum_probs=80.9
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 011249 382 TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYA 459 (490)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 459 (490)
...+..+...+.+.|++++|...|++.. .+.+...|..+..++...|++++|+..|+++++.+|+++.++..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4455667778888899999998888776 45567788888888888899999999999999888988888888888899
Q ss_pred hcCCcchHHHHHHHhhhccc
Q 011249 460 SMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 460 ~~g~~~~A~~~~~~~~~~~~ 479 (490)
..|++++|.+.+++..+..+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 99999999988888876654
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.75 E-value=6.8e-08 Score=72.52 Aligned_cols=98 Identities=9% Similarity=-0.010 Sum_probs=88.4
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 011249 382 TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYA 459 (490)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 459 (490)
...+..++..+...|++++|...+++.. .+.+...+..+...+...|++++|...++++.+..|+++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4567778889999999999999998876 44577888999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHhhhccc
Q 011249 460 SMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 460 ~~g~~~~A~~~~~~~~~~~~ 479 (490)
..|++++|.+.+++..+.++
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 99999999999999887544
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.75 E-value=3.6e-08 Score=85.19 Aligned_cols=129 Identities=11% Similarity=-0.053 Sum_probs=104.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCC----hhhHHHHHHHH
Q 011249 349 FIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCD----AGTWGALLGAC 424 (490)
Q Consensus 349 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~ 424 (490)
...+...+...|++++|.+.|+.+.. + .|+......+...+.+.|++++|+..|+.....|+ ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~--~-~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPV--A-GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCC--T-TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--c-CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence 34456667889999999999998875 2 34333666777789999999999999987764342 23677888999
Q ss_pred hhhCChHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhcCCcchHHHHHHHhhhcccc
Q 011249 425 KVHVNAELGEIAARHLLELG--PE-KTGNSALLANIYASMGKWKDSEIVKMMISETEKK 480 (490)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 480 (490)
...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++...++.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 99999999999999998533 44 4568889999999999999999999999887653
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.75 E-value=5.8e-08 Score=74.81 Aligned_cols=100 Identities=11% Similarity=0.019 Sum_probs=89.8
Q ss_pred CCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 011249 380 PLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANI 457 (490)
Q Consensus 380 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 457 (490)
.+...+..+...+...|++++|.+.|++.. .+.+...+..+...+...|++++|++.++++++..|+++.++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 346677888999999999999999998876 344678899999999999999999999999999999999999999999
Q ss_pred HHhcCCcchHHHHHHHhhhccc
Q 011249 458 YASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 458 ~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
+.+.|++++|.+.+++..+...
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHhhHHHHHHHHHHHHHhCC
Confidence 9999999999999999887654
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.75 E-value=1e-07 Score=76.66 Aligned_cols=95 Identities=16% Similarity=0.048 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHH
Q 011249 311 VISYSSMITAFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMV 389 (490)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 389 (490)
...+..+...+...|++++|+..|++.++. .| +...+..+..+|...|++++|+..++++.+. .+.+...+..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 445666666667777777777777776663 33 4456666666677777777777777776662 233455666666
Q ss_pred HHHhhcCChHHHHHHHHhcc
Q 011249 390 DLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 390 ~~~~~~g~~~~A~~~~~~~~ 409 (490)
.+|...|++++|.+.|++..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHH
Confidence 77777777777777776654
No 153
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.73 E-value=1.1e-05 Score=72.27 Aligned_cols=176 Identities=9% Similarity=-0.060 Sum_probs=117.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccC-ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc-C-
Q 011249 218 VCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLG-DVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKC-G- 294 (490)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~- 294 (490)
....+.+..++|+++++++...... +...++.--.++...| +++++..+++.+.... +.+..+|+.-..++... +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 3344455567888888888876422 4455666666666667 5888888888888776 56667777666666655 6
Q ss_pred ChHHHHHHHhcccCC---ChhHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCC--
Q 011249 295 YLDLAWREFSRIKNK---DVISYSSMITAFADHGKSQ--------EALDMFLKMRNEGIEPNQVTFIGVLTACSHGGL-- 361 (490)
Q Consensus 295 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-- 361 (490)
++++++++++++.+. +..+|+--.-++.+.|.++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 788888888888773 4556655555555555555 8888888888753 2255667666666666665
Q ss_pred -----hHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCCh
Q 011249 362 -----VEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQL 398 (490)
Q Consensus 362 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 398 (490)
++++++.++++.. ..+-|...|+.+-..+.+.|+.
T Consensus 219 ~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCC
Confidence 5777777777776 3455566676666666665553
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.71 E-value=1.2e-07 Score=71.95 Aligned_cols=98 Identities=17% Similarity=0.124 Sum_probs=88.7
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 011249 382 TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYA 459 (490)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 459 (490)
...+..+...+...|++++|.+.++++. .+.+..++..+...+...|++++|...++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4677788899999999999999998876 44567788999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHhhhccc
Q 011249 460 SMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 460 ~~g~~~~A~~~~~~~~~~~~ 479 (490)
..|++++|...++++.+..+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999887654
No 155
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=1.7e-07 Score=82.81 Aligned_cols=188 Identities=10% Similarity=-0.078 Sum_probs=101.3
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHH
Q 011249 246 VAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFA 322 (490)
Q Consensus 246 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 322 (490)
..+..+...+...|++++|...|+.+.+.. +.+...+..+..+|.+.|++++|...+++..+ .+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344445555555566666666665555543 33555566666666666666666666666554 24456666777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHH
Q 011249 323 DHGKSQEALDMFLKMRNEGIEPNQV-TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKA 401 (490)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 401 (490)
..|++++|...|++..+. .|+.. .+...+.... ....+ ..+...... ..+.+......+... ..|++++|
T Consensus 84 ~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~-~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSAL---RIAKK-KRWNSIEER-RIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHH---HHHHH-HHHHHHHHT-CCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHH---HHHHH-HHHHHHHHH-HHhhhHHHHHHHHHH--HHHHHHHH
Confidence 777777777777776652 22210 0000111110 01111 122223331 445555554444333 26888888
Q ss_pred HHHHHhcc-CCCCh-hhHHHHHHHHhhh-CChHHHHHHHHHHHhc
Q 011249 402 HSLIMDYK-DFCDA-GTWGALLGACKVH-VNAELGEIAARHLLEL 443 (490)
Q Consensus 402 ~~~~~~~~-~~~~~-~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 443 (490)
.+.++... ..|+. .....+...+... +.+++|.++|+++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88887665 33433 3333343334444 6678888888888763
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.69 E-value=2.1e-07 Score=77.71 Aligned_cols=115 Identities=11% Similarity=0.030 Sum_probs=53.6
Q ss_pred hcCChhHHHH---HHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc----Ccc-cChhhHHHHHHHHhccCChH
Q 011249 191 KCGEVREAKK---VFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQE----NVR-ISEVAMVGAISACTQLGDVE 262 (490)
Q Consensus 191 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~ 262 (490)
..|++++|.+ .+..-.......+..+...+...|++++|+..+++.... +.. .....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333322233445566666666666666666666665541 111 12234555555555666666
Q ss_pred HHHHHHHHHHhc----CCC--CchhHHHHHHHHHHhcCChHHHHHHHhc
Q 011249 263 MAAILAKHVDEG----CCD--RTNYVSNALIHMHSKCGYLDLAWREFSR 305 (490)
Q Consensus 263 ~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 305 (490)
+|...+++..+. +.. .....+..+...+...|++++|...+++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 666655554332 101 0122334444444445555555444444
No 157
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=5.4e-07 Score=72.36 Aligned_cols=128 Identities=7% Similarity=-0.098 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q 011249 312 ISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDL 391 (490)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 391 (490)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 456667777888888888888888888742 235667777888888888899998888888873 34556778888888
Q ss_pred HhhcCChHHHHHHHHhcc--CCCChhhHHHH--HHHHhhhCChHHHHHHHHHHHh
Q 011249 392 LGRSGQLEKAHSLIMDYK--DFCDAGTWGAL--LGACKVHVNAELGEIAARHLLE 442 (490)
Q Consensus 392 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~ 442 (490)
+...|++++|.+.+++.. .+.+...+..+ +..+...|++++|++.+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888999999998887766 33344455333 3346778899999998887765
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.68 E-value=2.2e-07 Score=77.54 Aligned_cols=133 Identities=12% Similarity=-0.007 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCC-C---
Q 011249 311 VISYSSMITAFADHGKSQEALDMFLKMRN----EGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKP-L--- 381 (490)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~--- 381 (490)
...+..+...+...|++++|...+++..+ .+..| ....+..+...+...|++++|...+++..+.....+ +
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34455555555666666666666655544 11111 123455555566666666666666666554211111 1
Q ss_pred -chHHHHHHHHHhhcCChHHHHHHHHhcc----CCCC----hhhHHHHHHHHhhhCChHHHHHHHHHHHhc
Q 011249 382 -TEHLTCMVDLLGRSGQLEKAHSLIMDYK----DFCD----AGTWGALLGACKVHVNAELGEIAARHLLEL 443 (490)
Q Consensus 382 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (490)
...+..+...+...|++++|...+++.. ..++ ..++..+...+...|++++|.+.++++.+.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2334555566666666666666665543 1111 123455556666667777777777666654
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=3.9e-07 Score=71.60 Aligned_cols=111 Identities=10% Similarity=-0.072 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC----chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHH
Q 011249 346 QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL----TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGA 419 (490)
Q Consensus 346 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 419 (490)
...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|...+++.. .+.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34555555556666666666666666654 2233 4555666666677777777777766554 3335566777
Q ss_pred HHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 011249 420 LLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYA 459 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 459 (490)
+..++...|++++|...++++++.+|+++.++..+..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 7777888888888888888888888887777776665543
No 160
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.67 E-value=1e-07 Score=73.04 Aligned_cols=99 Identities=11% Similarity=-0.033 Sum_probs=89.2
Q ss_pred CchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 011249 381 LTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIY 458 (490)
Q Consensus 381 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 458 (490)
+...+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|++.++++.+..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45667788899999999999999998876 4456788899999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHHhhhccc
Q 011249 459 ASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 459 ~~~g~~~~A~~~~~~~~~~~~ 479 (490)
...|++++|...+++..+..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999887654
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.65 E-value=1.5e-07 Score=72.97 Aligned_cols=112 Identities=9% Similarity=-0.174 Sum_probs=83.5
Q ss_pred cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHH
Q 011249 345 NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLG 422 (490)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 422 (490)
+...+..+...+...|++++|...|++.... .+.+...+..+..++...|++++|...+++.. .+.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4566777777777888888888888887763 34456677778888888888888888887765 4446678888888
Q ss_pred HHhhhCChHHHHHHHHHHHhcCCC-----CCchHHHHHHHH
Q 011249 423 ACKVHVNAELGEIAARHLLELGPE-----KTGNSALLANIY 458 (490)
Q Consensus 423 ~~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 458 (490)
++...|++++|+..++++++..|+ +..+...+..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 888889999999999999888877 444444444443
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=2.3e-07 Score=72.98 Aligned_cols=100 Identities=11% Similarity=-0.052 Sum_probs=89.4
Q ss_pred CCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCCC----hhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHH
Q 011249 380 PLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCD----AGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALL 454 (490)
Q Consensus 380 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 454 (490)
.+...+..+...+...|++++|.+.|++.. ..|+ ...+..+...+...|++++|+..++++++..|+++.++..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 346677888899999999999999998876 4455 67888888999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchHHHHHHHhhhccc
Q 011249 455 ANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
+.++...|++++|...+++..+...
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999887654
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.64 E-value=2.8e-07 Score=87.65 Aligned_cols=94 Identities=9% Similarity=-0.048 Sum_probs=76.9
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 011249 382 TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYA 459 (490)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 459 (490)
...|..+..+|.+.|++++|+..+++.. .+.+...|..+..++...|++++|+..|+++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4577788899999999999999998876 45577889999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHH-HHHHhh
Q 011249 460 SMGKWKDSEI-VKMMIS 475 (490)
Q Consensus 460 ~~g~~~~A~~-~~~~~~ 475 (490)
+.|+++++.+ .+++|.
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999988774 345443
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.64 E-value=2.1e-07 Score=71.29 Aligned_cols=101 Identities=11% Similarity=-0.021 Sum_probs=58.8
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHcCCCCCc---hHHHHHHHHHhhcCChHHHHHHHHhcc--CCCC---hhhHHHHHHH
Q 011249 352 VLTACSHGGLVEDGCKQFELMTRVFGIKPLT---EHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCD---AGTWGALLGA 423 (490)
Q Consensus 352 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~---~~~~~~l~~~ 423 (490)
+...+...|++++|...++.+.+. .+.+. ..+..+..++...|++++|...|+++. .+.+ +..+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 444555666677777766666653 12222 355556666666666666666666554 2222 3445556666
Q ss_pred HhhhCChHHHHHHHHHHHhcCCCCCchHHHH
Q 011249 424 CKVHVNAELGEIAARHLLELGPEKTGNSALL 454 (490)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 454 (490)
+...|++++|...++++++..|+++......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 6666666666666666666666655544433
No 165
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.63 E-value=1.3e-07 Score=90.26 Aligned_cols=119 Identities=5% Similarity=-0.157 Sum_probs=96.3
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCC
Q 011249 352 VLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVN 429 (490)
Q Consensus 352 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 429 (490)
+...+...|++++|.+.++++.+. .+.+...+..+..+|.+.|++++|++.+++.. .+.+...+..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344567788899999999988873 34457788888899999999999999998776 34467788889999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHH--HHhcCCcchHHHHHH
Q 011249 430 AELGEIAARHLLELGPEKTGNSALLANI--YASMGKWKDSEIVKM 472 (490)
Q Consensus 430 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 472 (490)
+++|++.++++++..|+++.++..++.+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999998888 888899999999988
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.62 E-value=3.3e-06 Score=75.50 Aligned_cols=216 Identities=13% Similarity=-0.011 Sum_probs=156.8
Q ss_pred hccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC-ChHHHHHHHhcccC---CChhHHHHHHHHHHhc-C-ChHH
Q 011249 256 TQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCG-YLDLAWREFSRIKN---KDVISYSSMITAFADH-G-KSQE 329 (490)
Q Consensus 256 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-~-~~~~ 329 (490)
.+.+..++|..+++.+...+ |.+..+++.-..++...| .+++++..++.+.. ++..+|+.-...+... + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 34455678999999999887 666777877777777788 59999999999876 4667787777777666 6 8999
Q ss_pred HHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChH--------HHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCC---
Q 011249 330 ALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVE--------DGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQ--- 397 (490)
Q Consensus 330 a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 397 (490)
++.+++++.+. .| |...|..-...+.+.|.++ ++++.++++.+. .+-+...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 144 EIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcccccc
Confidence 99999999975 34 4556655444444444444 899999999883 45677788888888888876
Q ss_pred ----hHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCCh--------------------HHHHHHHHHHHhcC------C
Q 011249 398 ----LEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNA--------------------ELGEIAARHLLELG------P 445 (490)
Q Consensus 398 ----~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p 445 (490)
++++++.++++. .+.|...|+.+-..+...|.. ....++...+.... +
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 688888887766 556777888777777666654 23333333333322 4
Q ss_pred CCCchHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 446 EKTGNSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
.++.++..|+.+|.+.|+.++|.++++.+.+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 6677889999999999999999999999864
No 167
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.62 E-value=1.6e-07 Score=85.38 Aligned_cols=152 Identities=8% Similarity=-0.082 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 011249 311 VISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVD 390 (490)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 390 (490)
...+..+...+.+.|++++|...|++.++. .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 345666777777888888888888887763 454432 22334444433222 1 237788999
Q ss_pred HHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhcCCcchH
Q 011249 391 LLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIY-ASMGKWKDS 467 (490)
Q Consensus 391 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 467 (490)
+|.+.|++++|+..+++.. .+.+...|..+..++...|++++|+..|+++++++|+++.++..+..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876 4557789999999999999999999999999999999999999998884 456778889
Q ss_pred HHHHHHhhhcccccC
Q 011249 468 EIVKMMISETEKKKS 482 (490)
Q Consensus 468 ~~~~~~~~~~~~~~~ 482 (490)
..++++|........
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 999999877655443
No 168
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.59 E-value=8.5e-06 Score=72.54 Aligned_cols=116 Identities=9% Similarity=-0.026 Sum_probs=52.5
Q ss_pred hcCCh-HHHHHHHHHHHHcCcccChhhHHHHHHHHhccCC----------hHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 011249 222 QNGYA-KAAIEMYKVMRQENVRISEVAMVGAISACTQLGD----------VEMAAILAKHVDEGCCDRTNYVSNALIHMH 290 (490)
Q Consensus 222 ~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 290 (490)
+.|.+ ++|+++++.+...++. +...++.--.++...+. ++++..+++.+.... |.+..+|+.-.-++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44554 3567777776654321 22233332222222222 344555555555443 34444444444444
Q ss_pred HhcC--ChHHHHHHHhcccC---CChhHHHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 011249 291 SKCG--YLDLAWREFSRIKN---KDVISYSSMITAFADHGK-SQEALDMFLKMRN 339 (490)
Q Consensus 291 ~~~~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 339 (490)
...+ .+++++.+++++.+ .|..+|+--.-++...|. ++++++.+.++++
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~ 173 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 4444 24555555555443 234444444444444444 3455555555554
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.58 E-value=4.7e-08 Score=73.63 Aligned_cols=92 Identities=13% Similarity=-0.015 Sum_probs=53.5
Q ss_pred CCChHHHHHHHHHHHHHcC--CCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHH
Q 011249 359 GGLVEDGCKQFELMTRVFG--IKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGE 434 (490)
Q Consensus 359 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 434 (490)
.|++++|+..|+++.+. + .+.+...+..+..+|...|++++|++.|++.. .+.+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46666666777666651 2 12234555666666666666666666666654 3334556666666666666666666
Q ss_pred HHHHHHHhcCCCCCchH
Q 011249 435 IAARHLLELGPEKTGNS 451 (490)
Q Consensus 435 ~~~~~~~~~~p~~~~~~ 451 (490)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 66666666666665543
No 170
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.56 E-value=2.9e-07 Score=71.73 Aligned_cols=63 Identities=11% Similarity=-0.076 Sum_probs=45.2
Q ss_pred hHHHHHHHHhhhCChHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHhcCCcchHHHHHHHhhhcc
Q 011249 416 TWGALLGACKVHVNAELGEIAARHLLEL-------GPEKTGNS----ALLANIYASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 478 (490)
.|..+..++...|++++|+..+++++++ +|+++..| ...+.++...|++++|+..|++..+..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 6666666677777777777777777777 77777777 777777777777777777777766543
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.56 E-value=3.5e-07 Score=69.17 Aligned_cols=98 Identities=13% Similarity=-0.032 Sum_probs=71.5
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhh
Q 011249 349 FIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKV 426 (490)
Q Consensus 349 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 426 (490)
+..+...+.+.|++++|...++++.+. .+.+...+..+..++...|++++|+..|++.. .+.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344555667788888888888888773 44467777778888888888888888887766 44466788888888888
Q ss_pred hCChHHHHHHHHHHHhcCCCCC
Q 011249 427 HVNAELGEIAARHLLELGPEKT 448 (490)
Q Consensus 427 ~g~~~~a~~~~~~~~~~~p~~~ 448 (490)
.|++++|+..++++++.+|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999998888754
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.56 E-value=3.4e-07 Score=70.11 Aligned_cols=111 Identities=7% Similarity=-0.102 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-C----CCC----hhhHH
Q 011249 348 TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-D----FCD----AGTWG 418 (490)
Q Consensus 348 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~~~----~~~~~ 418 (490)
.+..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|...+++.. . .++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4555556666667777777777766652 23445566666777777777777777776654 1 111 55677
Q ss_pred HHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 011249 419 ALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASM 461 (490)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 461 (490)
.+..++...|++++|.+.++++.+..| ++.....+..+....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 777888888888888888888888887 466666666555443
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=7.3e-07 Score=84.33 Aligned_cols=163 Identities=8% Similarity=-0.141 Sum_probs=109.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCcH----HHHHHHHHHhcCCCChHHHHHHHHHHHHHc---CCCC-CchH
Q 011249 314 YSSMITAFADHGKSQEALDMFLKMRNE-GIEPNQ----VTFIGVLTACSHGGLVEDGCKQFELMTRVF---GIKP-LTEH 384 (490)
Q Consensus 314 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~ 384 (490)
+..++..|...|++++|.+.+..+... +..++. ...+.+...+...|+.+.|..+++...... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 556777777788888888777776542 111222 123334444566788888888887765421 1122 2446
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhcc-------CCC-ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcC---CCC----Cc
Q 011249 385 LTCMVDLLGRSGQLEKAHSLIMDYK-------DFC-DAGTWGALLGACKVHVNAELGEIAARHLLELG---PEK----TG 449 (490)
Q Consensus 385 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 449 (490)
+..++..|...|++++|..+++++. ..+ ...++..++..|...|++++|..+++++.... |.. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6778888888889888888887654 112 23467777888888999999999998887753 222 24
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 450 NSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566777788888899988888776654
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.55 E-value=5.1e-07 Score=66.89 Aligned_cols=99 Identities=12% Similarity=-0.067 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCC--ChhhHHHHHHH
Q 011249 348 TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFC--DAGTWGALLGA 423 (490)
Q Consensus 348 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~--~~~~~~~l~~~ 423 (490)
.+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|.+.+++.. .+. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4455566666777777777777777663 33445566677777777777777777776665 233 46677777778
Q ss_pred Hhhh-CChHHHHHHHHHHHhcCCCCC
Q 011249 424 CKVH-VNAELGEIAARHLLELGPEKT 448 (490)
Q Consensus 424 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 448 (490)
+... |++++|.+.++++....|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888887654
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.54 E-value=1.4e-06 Score=66.52 Aligned_cols=93 Identities=15% Similarity=0.085 Sum_probs=66.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHhcc-CCC-Ch---hhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC---CchHHHHHHH
Q 011249 386 TCMVDLLGRSGQLEKAHSLIMDYK-DFC-DA---GTWGALLGACKVHVNAELGEIAARHLLELGPEK---TGNSALLANI 457 (490)
Q Consensus 386 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 457 (490)
..+...+...|++++|.+.|+++. ..| +. ..+..+..++...|++++|+..++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 345666777788888887777665 223 23 366667777777788888888888888777777 5667777778
Q ss_pred HHhcCCcchHHHHHHHhhhcc
Q 011249 458 YASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 458 ~~~~g~~~~A~~~~~~~~~~~ 478 (490)
+...|++++|...++++.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 888888888888877776653
No 176
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.54 E-value=5.3e-07 Score=68.84 Aligned_cols=101 Identities=7% Similarity=-0.127 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCC----C----hhhHH
Q 011249 348 TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFC----D----AGTWG 418 (490)
Q Consensus 348 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~----~~~~~ 418 (490)
.+..+...+.+.|++++|+..|++..+. .|.+...|..+..+|...|++++|++.+++.. ..| + ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3444555555555666666666555542 23334455555566666666666666555443 111 1 12556
Q ss_pred HHHHHHhhhCChHHHHHHHHHHHhcCCCCCchH
Q 011249 419 ALLGACKVHVNAELGEIAARHLLELGPEKTGNS 451 (490)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 451 (490)
.+..++...|++++|++.|+++++..|+ +...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence 6667777888888888888888887765 4433
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.54 E-value=2.4e-07 Score=74.38 Aligned_cols=80 Identities=11% Similarity=-0.036 Sum_probs=63.4
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCC-chHHHHHHHH
Q 011249 382 TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKT-GNSALLANIY 458 (490)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 458 (490)
...|..+..+|.+.|++++|+..+++.. .+.+...|..+..++...|++++|...|+++++++|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4567788888888999999998887776 455677888888899999999999999999999999887 5555555554
Q ss_pred Hhc
Q 011249 459 ASM 461 (490)
Q Consensus 459 ~~~ 461 (490)
.+.
T Consensus 143 ~~~ 145 (162)
T 3rkv_A 143 ERR 145 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.54 E-value=2.5e-07 Score=70.86 Aligned_cols=98 Identities=12% Similarity=-0.009 Sum_probs=86.8
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC-------CchHH
Q 011249 382 TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEK-------TGNSA 452 (490)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 452 (490)
...+..+...+...|++++|...|++.. .+.+...+..+...+...|++++|...++++.+..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3467778899999999999999998876 45577788899999999999999999999999988776 78899
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 453 LLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 453 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
.++.++...|++++|.+.++++.+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999999999999999999887643
No 179
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.52 E-value=1.6e-06 Score=78.84 Aligned_cols=144 Identities=8% Similarity=-0.063 Sum_probs=107.5
Q ss_pred ChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc----------------HHHHHHHHHH
Q 011249 295 YLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPN----------------QVTFIGVLTA 355 (490)
Q Consensus 295 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----------------~~~~~~l~~~ 355 (490)
++++|...|+...+ .+...+..+...+.+.|++++|+..|++.++. .|+ ...+..+..+
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444332 24456777788888888888888888888874 333 3678888888
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHH
Q 011249 356 CSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELG 433 (490)
Q Consensus 356 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 433 (490)
+.+.|++++|+..++++.+. .+.+...+..+..+|...|++++|...|++.. .+.+...+..+..++...|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998873 44567788888899999999999999998776 445667888888888888888888
Q ss_pred -HHHHHHHHh
Q 011249 434 -EIAARHLLE 442 (490)
Q Consensus 434 -~~~~~~~~~ 442 (490)
...++++..
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 446666654
No 180
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.50 E-value=9.5e-08 Score=70.98 Aligned_cols=95 Identities=8% Similarity=-0.127 Sum_probs=81.4
Q ss_pred CchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCC------CchHH
Q 011249 381 LTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEK------TGNSA 452 (490)
Q Consensus 381 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 452 (490)
+...+..+...+...|++++|++.|++.. .+.+...+..+..++...|++++|++.++++++.+|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34567778888899999999999998776 45567888899999999999999999999999999998 78889
Q ss_pred HHHHHHHhcCCcchHHHHHHHhh
Q 011249 453 LLANIYASMGKWKDSEIVKMMIS 475 (490)
Q Consensus 453 ~l~~~~~~~g~~~~A~~~~~~~~ 475 (490)
.++.++...|++++|.+.++++.
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHhHhhhHhHHHHhH
Confidence 99999999999999888776543
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.50 E-value=4.1e-07 Score=72.97 Aligned_cols=67 Identities=7% Similarity=-0.046 Sum_probs=62.1
Q ss_pred ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 413 DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
+...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 3467888899999999999999999999999999999999999999999999999999999887654
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.49 E-value=1.7e-07 Score=70.56 Aligned_cols=85 Identities=11% Similarity=0.010 Sum_probs=63.2
Q ss_pred hcCChHHHHHHHHhccCC----C-ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHH
Q 011249 394 RSGQLEKAHSLIMDYKDF----C-DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSE 468 (490)
Q Consensus 394 ~~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 468 (490)
..|++++|+..|++.... | +...+..+..++...|++++|+..++++++.+|+++.++..++.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357788888888776622 3 34577777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhhcc
Q 011249 469 IVKMMISETE 478 (490)
Q Consensus 469 ~~~~~~~~~~ 478 (490)
..+++..+..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 8888776654
No 183
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.49 E-value=3e-07 Score=76.59 Aligned_cols=151 Identities=8% Similarity=-0.034 Sum_probs=99.0
Q ss_pred HHHhcCChHHHHHHHhcccC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc--------------HHHHH
Q 011249 289 MHSKCGYLDLAWREFSRIKN---KDVISYSSMITAFADHGKSQEALDMFLKMRNEGI-EPN--------------QVTFI 350 (490)
Q Consensus 289 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~--------------~~~~~ 350 (490)
.....|+++++.+.++...+ .....+..+...+...|++++|...|++..+... .|+ ...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 33444566666665554332 2345677778888889999999999998887321 110 26777
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhC
Q 011249 351 GVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHV 428 (490)
Q Consensus 351 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 428 (490)
.+..++...|++++|...++++.+. .+.+...+..+..+|...|++++|.+.|++.. .+.+...+..+..++...+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 8888889999999999999999883 45567788889999999999999999998876 3445667777777777776
Q ss_pred ChHHHH-HHHHHHH
Q 011249 429 NAELGE-IAARHLL 441 (490)
Q Consensus 429 ~~~~a~-~~~~~~~ 441 (490)
+.+++. ..+..+.
T Consensus 171 ~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 171 EARKKDKLTFGGMF 184 (198)
T ss_dssp HHHC----------
T ss_pred HHHHHHHHHHHHHh
Confidence 666655 4444443
No 184
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.48 E-value=4.3e-05 Score=68.05 Aligned_cols=131 Identities=11% Similarity=0.011 Sum_probs=67.5
Q ss_pred hcCChh-HHHHHHhhcCCC---CHHhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCcccChhhHHHHHHHHh
Q 011249 191 KCGEVR-EAKKVFDEISEP---DASCWAAMTVCYVQNGY----------AKAAIEMYKVMRQENVRISEVAMVGAISACT 256 (490)
Q Consensus 191 ~~~~~~-~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 256 (490)
+.|.++ +|+++++.+... +..+|+.--.++...+. +++++.+++.+....++ +..+|..-..++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHh
Confidence 444444 566666665542 23334433333332222 45566666666654322 4455555555555
Q ss_pred ccC--ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC-hHHHHHHHhcccC---CChhHHHHHHHHHHh
Q 011249 257 QLG--DVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGY-LDLAWREFSRIKN---KDVISYSSMITAFAD 323 (490)
Q Consensus 257 ~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 323 (490)
..| +++++..+++.+.+.. +.+...|+.-.-++...|. ++++++.++++.+ .|..+|+-....+..
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 555 3566666666666654 4455555554555555555 3666666666554 344555555444443
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=1.6e-05 Score=75.12 Aligned_cols=194 Identities=9% Similarity=-0.010 Sum_probs=101.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCcccCh----------------hhHHHHHHHHhccCChHHHHHHHHHHHhcCCC-C
Q 011249 216 MTVCYVQNGYAKAAIEMYKVMRQENVRISE----------------VAMVGAISACTQLGDVEMAAILAKHVDEGCCD-R 278 (490)
Q Consensus 216 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~ 278 (490)
-...+.+.|++++|++.|.++.+....... ..+..+...|...|++++|..++..+.+.... +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 345677888888888888888865322111 12556666677777777777776665432111 1
Q ss_pred ch----hHHHHHHHHHHhcCChHHHHHHHhcccC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC-
Q 011249 279 TN----YVSNALIHMHSKCGYLDLAWREFSRIKN-----K----DVISYSSMITAFADHGKSQEALDMFLKMRNE--GI- 342 (490)
Q Consensus 279 ~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~- 342 (490)
+. .+.+.+...+...|+++.|..+++.... . -..++..+...|...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 1222333344445666666666554432 0 1234555566666666666666666655431 11
Q ss_pred -CCc-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC-----chHHHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 343 -EPN-QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL-----TEHLTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 343 -~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
.|. ...+..++..|...|++++|..++++......-.++ ...+..++..+...|++++|...|.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 111 124555555666666666666666555432111111 1233444455555566666665554443
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.43 E-value=6.6e-07 Score=71.37 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcc----CCC----ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCC------CCCc
Q 011249 384 HLTCMVDLLGRSGQLEKAHSLIMDYK----DFC----DAGTWGALLGACKVHVNAELGEIAARHLLELGP------EKTG 449 (490)
Q Consensus 384 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 449 (490)
.+..+...+...|++++|.+.+++.. ..+ ....+..+...+...|++++|.+.++++++..+ ..+.
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 34444555555555555555554433 001 133455566667777777777777777765421 1234
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 450 NSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
.+..++.++...|++++|.+.+++..+.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6677788888888888888888776553
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.43 E-value=7.8e-07 Score=81.79 Aligned_cols=138 Identities=9% Similarity=-0.031 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q 011249 312 ISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDL 391 (490)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 391 (490)
..+..+...+.+.|++++|+..|++.++. .++.. . .... +.... ..+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~------~----~~~~-------~~~~~--~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR------A----AAED-------ADGAK--LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH------H----HSCH-------HHHGG--GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc------c----ccCh-------HHHHH--HHHHHHHHHHHHHHH
Confidence 34666666777777777777777776652 11110 0 0000 11100 112235677888999
Q ss_pred HhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHH
Q 011249 392 LGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEI 469 (490)
Q Consensus 392 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 469 (490)
|.+.|++++|++.+++.. .+.+...+..+..++...|++++|++.|++++++.|+++.++..++.++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876 344677889999999999999999999999999999999999999999999888887765
Q ss_pred H
Q 011249 470 V 470 (490)
Q Consensus 470 ~ 470 (490)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 4
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.38 E-value=2.1e-05 Score=76.40 Aligned_cols=167 Identities=5% Similarity=-0.117 Sum_probs=128.2
Q ss_pred hHHHHHHHhcccC---CChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCC-
Q 011249 296 LDLAWREFSRIKN---KDVISYSSMITAFADHGK----------SQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGG- 360 (490)
Q Consensus 296 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g- 360 (490)
.++|++.++++.. .+..+|+.-..++...|+ +++++..++++.+. .| +...|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence 4556677766654 234556655555555555 88899999998885 34 4557777777777778
Q ss_pred -ChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcC-ChHHHHHHHHhcc--CCCChhhHHHHHHHHhhh---------
Q 011249 361 -LVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSG-QLEKAHSLIMDYK--DFCDAGTWGALLGACKVH--------- 427 (490)
Q Consensus 361 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--------- 427 (490)
+++++++.++++.+. .+-+...|+.-..++.+.| .++++++.++++. .+.+...|+....++...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999883 4556777877777778888 8899999998887 445677888777776553
Q ss_pred -----CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcch
Q 011249 428 -----VNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKD 466 (490)
Q Consensus 428 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 466 (490)
+.++++++.++++++.+|++..+|..+..++.+.+++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998666
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.36 E-value=2.7e-06 Score=67.69 Aligned_cols=132 Identities=11% Similarity=-0.004 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc----HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC----ch
Q 011249 313 SYSSMITAFADHGKSQEALDMFLKMRNEGI-EPN----QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL----TE 383 (490)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 383 (490)
++..+...+...|++++|...+++..+... .++ ...+..+...+...|++++|...+++..+.....++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 444555556666666666666666554210 011 124555566666677777777777666542111111 33
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcc----CCC----ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcC
Q 011249 384 HLTCMVDLLGRSGQLEKAHSLIMDYK----DFC----DAGTWGALLGACKVHVNAELGEIAARHLLELG 444 (490)
Q Consensus 384 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (490)
.+..+...+...|++++|.+.+++.. ... ....+..+...+...|++++|.+.++++.+..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 45566677777777777777776554 111 13456677778888899999999988887754
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.36 E-value=3.5e-06 Score=79.95 Aligned_cols=124 Identities=11% Similarity=0.011 Sum_probs=97.1
Q ss_pred HhcCCCChHHHHHHHHHHHHHcC--CCC----CchHHHHHHHHHhhcCChHHHHHHHHhcc---------CCCC-hhhHH
Q 011249 355 ACSHGGLVEDGCKQFELMTRVFG--IKP----LTEHLTCMVDLLGRSGQLEKAHSLIMDYK---------DFCD-AGTWG 418 (490)
Q Consensus 355 ~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~ 418 (490)
.+..+|++++|+.++++..+... +.| ...+++.|+.+|...|++++|..++++.. ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578999999988888776421 122 25567888999999999999999887755 2233 34788
Q ss_pred HHHHHHhhhCChHHHHHHHHHHHh-----cCCCCCc---hHHHHHHHHHhcCCcchHHHHHHHhhhcc
Q 011249 419 ALLGACKVHVNAELGEIAARHLLE-----LGPEKTG---NSALLANIYASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 478 (490)
.|...|...|++++|+.+++++++ .+|++|. ....+..++.+.|++++|+.++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999987 5687765 44577888889999999999999998754
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.36 E-value=1.5e-06 Score=79.07 Aligned_cols=153 Identities=9% Similarity=-0.067 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCC
Q 011249 280 NYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHG 359 (490)
Q Consensus 280 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 359 (490)
...+..+...+.+.|++++|...|++....++... .+...++++++...+. ...+..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34567788889999999999999998765222111 1223333444332221 13677888889999
Q ss_pred CChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCC-ChhhHHHHHHH-HhhhCChHHHHHH
Q 011249 360 GLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFC-DAGTWGALLGA-CKVHVNAELGEIA 436 (490)
Q Consensus 360 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-~~~~g~~~~a~~~ 436 (490)
|++++|+..++++.+. .+.+...+..+..+|...|++++|...|++.. ..| +...+..+... ....+..+++...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999873 34567788899999999999999999998886 334 44555555554 2445678889999
Q ss_pred HHHHHhcCCCCCc
Q 011249 437 ARHLLELGPEKTG 449 (490)
Q Consensus 437 ~~~~~~~~p~~~~ 449 (490)
|.+++...|+++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999998887653
No 192
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.31 E-value=3.9e-06 Score=80.07 Aligned_cols=113 Identities=8% Similarity=-0.119 Sum_probs=48.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHH
Q 011249 322 ADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEK 400 (490)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 400 (490)
.+.|++++|...+++..+. .| +...+..+..++.+.|++++|...++++.+ ..+.+...+..+..+|...|++++
T Consensus 17 ~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555554442 22 233444444455555555555555555544 222334444445555555555555
Q ss_pred HHHHHHhcc--CCCChhhHHHHHHH--HhhhCChHHHHHHHH
Q 011249 401 AHSLIMDYK--DFCDAGTWGALLGA--CKVHVNAELGEIAAR 438 (490)
Q Consensus 401 A~~~~~~~~--~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 438 (490)
|.+.|++.. .+.+...+..+..+ +...|++++|++.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555554433 12222333333333 444455555555555
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.31 E-value=2.7e-06 Score=60.24 Aligned_cols=81 Identities=19% Similarity=0.142 Sum_probs=66.4
Q ss_pred chHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 011249 382 TEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYA 459 (490)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 459 (490)
...+..+...+...|++++|...+++.. .+.+...+..+..++...|++++|...++++.+.+|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4566677788888888888888887765 34466778888888999999999999999999999999999999888887
Q ss_pred hcC
Q 011249 460 SMG 462 (490)
Q Consensus 460 ~~g 462 (490)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.29 E-value=6.3e-07 Score=69.71 Aligned_cols=83 Identities=12% Similarity=0.027 Sum_probs=44.1
Q ss_pred CChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCC----------hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-
Q 011249 396 GQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVN----------AELGEIAARHLLELGPEKTGNSALLANIYASMG- 462 (490)
Q Consensus 396 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 462 (490)
+.+++|.+.++... .+.+...|..+..++...++ +++|+..|+++++++|+++.+|..++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 33444444444333 22334444444444444433 346666666666666666666666666666553
Q ss_pred ----------CcchHHHHHHHhhhcc
Q 011249 463 ----------KWKDSEIVKMMISETE 478 (490)
Q Consensus 463 ----------~~~~A~~~~~~~~~~~ 478 (490)
++++|++.|++..+.+
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5666666666665543
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.28 E-value=2.6e-06 Score=61.77 Aligned_cols=66 Identities=23% Similarity=0.118 Sum_probs=48.7
Q ss_pred CChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 412 CDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
.++..+..+..++...|++++|+..|+++++.+|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345566777777777777777777777777777777777777777777777777777777766544
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.27 E-value=2.2e-06 Score=66.81 Aligned_cols=74 Identities=9% Similarity=-0.008 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcc-C-------CC-ChhhH----HHHHHHHhhhCChHHHHHHHHHHHhcCCCCCch
Q 011249 384 HLTCMVDLLGRSGQLEKAHSLIMDYK-D-------FC-DAGTW----GALLGACKVHVNAELGEIAARHLLELGPEKTGN 450 (490)
Q Consensus 384 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~~-~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 450 (490)
.|..+..++.+.|++++|+..+++.. . .| +...| .....++...|++++|+..|++++++.|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 67777777788888888877776655 3 55 44577 889999999999999999999999999999887
Q ss_pred HHHHHHH
Q 011249 451 SALLANI 457 (490)
Q Consensus 451 ~~~l~~~ 457 (490)
+..+..+
T Consensus 139 ~~~~~~~ 145 (159)
T 2hr2_A 139 TPGKERM 145 (159)
T ss_dssp CTTHHHH
T ss_pred HHHHHHH
Confidence 7666544
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.24 E-value=2.7e-06 Score=63.56 Aligned_cols=81 Identities=11% Similarity=-0.082 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHH
Q 011249 364 DGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLL 441 (490)
Q Consensus 364 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (490)
.|+..+++..+ ..+.+...+..+..+|...|++++|...|++.. .+.+...|..+..++...|++++|...|++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666654 233445666667777777777777777776655 33445566666777777777777777777777
Q ss_pred hcCCC
Q 011249 442 ELGPE 446 (490)
Q Consensus 442 ~~~p~ 446 (490)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 66654
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.19 E-value=6.5e-06 Score=58.33 Aligned_cols=70 Identities=11% Similarity=0.048 Sum_probs=60.6
Q ss_pred CCChhhHHHHHHHHhhhCC---hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccc
Q 011249 411 FCDAGTWGALLGACKVHVN---AELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKK 480 (490)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 480 (490)
++++..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+..|+++.+..+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4567778888887765554 799999999999999999999999999999999999999999999887665
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.17 E-value=6.5e-06 Score=78.17 Aligned_cols=66 Identities=8% Similarity=-0.089 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 414 AGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|+..|+++.+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 468888999999999999999999999999999999999999999999999999999999987654
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.08 E-value=3.3e-05 Score=75.13 Aligned_cols=152 Identities=9% Similarity=-0.044 Sum_probs=124.1
Q ss_pred CChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHhcCCCC----------hHHHHHHHHHHHHHcCCCCCchHHHHHHHHHh
Q 011249 325 GKSQEALDMFLKMRNEGIEPNQV-TFIGVLTACSHGGL----------VEDGCKQFELMTRVFGIKPLTEHLTCMVDLLG 393 (490)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 393 (490)
...++|++.++++.+. .|+.. .|+.-..++...|+ ++++++.++.+.+ ..+.+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3456889999999984 66544 55555555555555 8999999999998 45667778888888888
Q ss_pred hcC--ChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhC-ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-------
Q 011249 394 RSG--QLEKAHSLIMDYK--DFCDAGTWGALLGACKVHV-NAELGEIAARHLLELGPEKTGNSALLANIYASM------- 461 (490)
Q Consensus 394 ~~g--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 461 (490)
+.| +++++++.++++. .+.+...|+.-..++...| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 899 7799999999988 5667889998888888888 899999999999999999999999999998874
Q ss_pred -------CCcchHHHHHHHhhhcccc
Q 011249 462 -------GKWKDSEIVKMMISETEKK 480 (490)
Q Consensus 462 -------g~~~~A~~~~~~~~~~~~~ 480 (490)
++++++++.+++.....+.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC
Confidence 5678899999888776543
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.03 E-value=1.4e-05 Score=59.54 Aligned_cols=78 Identities=9% Similarity=-0.088 Sum_probs=49.5
Q ss_pred HHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhc
Q 011249 400 KAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 400 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
+|++.|++.. .+.+...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444554443 23345566666666666777777777777777777766666777777777777777777776666543
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.02 E-value=1.3e-05 Score=59.01 Aligned_cols=68 Identities=6% Similarity=-0.122 Sum_probs=62.4
Q ss_pred ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccc
Q 011249 413 DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKK 480 (490)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 480 (490)
+...+..+...+...|++++|++.|+++++..|+++.++..++.++.+.|++++|++.+++..+..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 45678888899999999999999999999999999999999999999999999999999999876543
No 203
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.02 E-value=1.9e-08 Score=90.96 Aligned_cols=392 Identities=9% Similarity=0.012 Sum_probs=228.1
Q ss_pred CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCCCCCCceehHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHhhHHHHH
Q 011249 31 HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSILLYAKMHRLGVLTSGFTFSSVL 110 (490)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 110 (490)
..+. +|+.|..+..+.+. +.+|++-|=+...| ..|..+|....+.|.+++-++.+.-.++..-.|.. =+.++
T Consensus 52 n~p~--VWs~LgkAqL~~~~-v~eAIdsyIkA~Dp---s~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I--DteLi 123 (624)
T 3lvg_A 52 NEPA--VWSQLAKAQLQKGM-VKEAIDSYIKADDP---SSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELI 123 (624)
T ss_dssp CCCC--CSSSHHHHTTTSSS-CTTTTTSSCCCSCC---CSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--THHHH
T ss_pred CCcc--HHHHHHHHHHccCc-hHHHHHHHHhCCCh---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--HHHHH
Confidence 6777 88999999999988 88888777665554 55888999999999999988888766654333322 23344
Q ss_pred HHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHH
Q 011249 111 NACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYG 190 (490)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 190 (490)
- +|++.++..+-.+.+ ..||..-...+..-|...|.++.|.-+|..+ ..|..|...++
T Consensus 124 ~--------------ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~i-----sN~akLAstLV 181 (624)
T 3lvg_A 124 F--------------ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLV 181 (624)
T ss_dssp H--------------HHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS-----CCCTTTSSSSS
T ss_pred H--------------HHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhC-----ccHHHHHHHHH
Confidence 3 467777765432221 2366666667778888888888877766544 33444555566
Q ss_pred hcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHH
Q 011249 191 KCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKH 270 (490)
Q Consensus 191 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 270 (490)
+.|++..|.+.-++. .++.+|..+-.+|...+.+..|.-.--.++- .+.....++..|...|.+++.+.+++.
T Consensus 182 ~L~~yq~AVdaArKA--ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 182 HLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp SCSGGGSSTTTTTTC--CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHHHHHHHHHhc--CChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 777777665443332 5677888888899999988877554333331 222233456678888999988888888
Q ss_pred HHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC----C-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011249 271 VDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN----K-------DVISYSSMITAFADHGKSQEALDMFLKMRN 339 (490)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (490)
..... ......|+-|.-.|++- ++++..+.++.... | ....|.-++-.|.+-.++|.|... |.+
T Consensus 255 glglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~ 329 (624)
T 3lvg_A 255 ALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMN 329 (624)
T ss_dssp HTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTS
T ss_pred HhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHh
Confidence 76543 45667788888888775 45555555554332 2 455688888888888888876532 221
Q ss_pred cCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHh------------
Q 011249 340 EGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMD------------ 407 (490)
Q Consensus 340 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------------ 407 (490)
+ +|+...-..+.....+..+.+---+.+.-. +.-.+...+.|+.++...=+...+.++|++
T Consensus 330 h--~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FY-----L~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~ 402 (624)
T 3lvg_A 330 H--PTDAWKEGQFKDIITKVANVELYYRAIQFY-----LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLR 402 (624)
T ss_dssp C--HHHHCCGGGGTTTGGGCSCSHHHHHHHHHH-----TTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGT
T ss_pred C--ChhhccHHHHHHHHHHcchHHHHHHHHHHH-----HHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHH
Confidence 1 111111111222233333333222222111 112222334444444444444444444433
Q ss_pred -ccCCCChhhHHHHHHHHhhhCChHHHHHHHHHH---------HhcC-CCCCchHHHHHHHHHhcCCcchHHHHH
Q 011249 408 -YKDFCDAGTWGALLGACKVHVNAELGEIAARHL---------LELG-PEKTGNSALLANIYASMGKWKDSEIVK 471 (490)
Q Consensus 408 -~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---------~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (490)
.....+..+-.++-..+....|++.-....+.. .++. .+-..+...-+..|.+.++|+++..+.
T Consensus 403 ~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~ 477 (624)
T 3lvg_A 403 SVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELC 477 (624)
T ss_dssp SCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCS
T ss_pred HHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 333344555556666677777766443322110 0010 112344445566677777777776654
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.02 E-value=5.5e-05 Score=58.38 Aligned_cols=109 Identities=10% Similarity=-0.047 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhh----cCChHHH
Q 011249 326 KSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGR----SGQLEKA 401 (490)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 401 (490)
++++|...|++..+.| .|+.. +...|...+.+++|.+.|++..+. -++..+..|..+|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4566666666666654 22222 445555555566666666666552 234444555555554 4555555
Q ss_pred HHHHHhccCCCChhhHHHHHHHHhh----hCChHHHHHHHHHHHhc
Q 011249 402 HSLIMDYKDFCDAGTWGALLGACKV----HVNAELGEIAARHLLEL 443 (490)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 443 (490)
.++|++.....++..+..+...|.. .+|.++|.+.|+++.+.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555554433444455555555544 45555555555555554
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.00 E-value=8.5e-06 Score=63.34 Aligned_cols=91 Identities=15% Similarity=0.011 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCC----------hHHHHHHHHhcc--CCCChhhHHHHHHHHhhh-
Q 011249 361 LVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQ----------LEKAHSLIMDYK--DFCDAGTWGALLGACKVH- 427 (490)
Q Consensus 361 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~- 427 (490)
.+++|.+.++...+. -+.+...|..+..++...|+ +++|+..|++.. .+.+...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 455555555555552 23345555555555555544 347777776665 344566777777777765
Q ss_pred ----------CChHHHHHHHHHHHhcCCCCCchHHH
Q 011249 428 ----------VNAELGEIAARHLLELGPEKTGNSAL 453 (490)
Q Consensus 428 ----------g~~~~a~~~~~~~~~~~p~~~~~~~~ 453 (490)
|++++|++.|+++++++|++......
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 58999999999999999997644333
No 206
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.99 E-value=5.6e-05 Score=69.39 Aligned_cols=92 Identities=9% Similarity=0.033 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcccCC-------------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011249 281 YVSNALIHMHSKCGYLDLAWREFSRIKNK-------------------DVISYSSMITAFADHGKSQEALDMFLKMRNEG 341 (490)
Q Consensus 281 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 341 (490)
..+..+...+.+.|++++|+..|++..+- +...|..+..+|.+.|++++|+..++++++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 45677888999999999999999876640 1233444444444444444444444444432
Q ss_pred CCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 011249 342 IEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTR 374 (490)
Q Consensus 342 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 374 (490)
.| +...+..+..+|...|++++|...|+++.+
T Consensus 303 -~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 303 -DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22 223344444444444444444444444443
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.99 E-value=1.5e-05 Score=57.48 Aligned_cols=82 Identities=12% Similarity=0.016 Sum_probs=65.2
Q ss_pred HHHHHhhcCChHHHHHHHHhcc--CCCChh-hHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 011249 388 MVDLLGRSGQLEKAHSLIMDYK--DFCDAG-TWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKW 464 (490)
Q Consensus 388 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 464 (490)
.+..+.+.|++++|.+.+++.. .+.+.. .+..+..++...|++++|++.|+++++.+|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4567788899999999998876 444567 88888899999999999999999999999998887633 455
Q ss_pred chHHHHHHHhhhc
Q 011249 465 KDSEIVKMMISET 477 (490)
Q Consensus 465 ~~A~~~~~~~~~~ 477 (490)
.++...+++..+.
T Consensus 78 ~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 78 MDILNFYNKDMYN 90 (99)
T ss_dssp HHHHHHHCCTTHH
T ss_pred HHHHHHHHHHhcc
Confidence 6667777665543
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.88 E-value=0.00031 Score=54.06 Aligned_cols=112 Identities=4% Similarity=-0.087 Sum_probs=93.6
Q ss_pred CChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHHHHHHHhh----hCChHHHHH
Q 011249 360 GLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKV----HVNAELGEI 435 (490)
Q Consensus 360 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~ 435 (490)
+++++|...|++..+. + .|. .. +...|...+..++|.++|++.....++..+..+...|.. .+|+++|.+
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4678899999999884 4 222 33 788888888899999999888766788888888888887 789999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHh----cCCcchHHHHHHHhhhccc
Q 011249 436 AARHLLELGPEKTGNSALLANIYAS----MGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 436 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 479 (490)
.|+++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999886 578889999999998 8999999999999888764
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.87 E-value=3.7e-05 Score=54.15 Aligned_cols=67 Identities=19% Similarity=0.153 Sum_probs=61.2
Q ss_pred ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 413 DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
+...+..+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|...+++..+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3557788888999999999999999999999999999999999999999999999999999887643
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.78 E-value=0.00011 Score=69.69 Aligned_cols=123 Identities=10% Similarity=-0.075 Sum_probs=86.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcC---CC---Cc-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHc--CCCC----CchHHH
Q 011249 320 AFADHGKSQEALDMFLKMRNEG---IE---PN-QVTFIGVLTACSHGGLVEDGCKQFELMTRVF--GIKP----LTEHLT 386 (490)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~---~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~ 386 (490)
.+..+|++++|+.++++..+.. +- |+ ..+++.|...|...|++++|..++++..+.. -+.| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3556788888888888776521 12 22 2477888888888888888888888776531 1222 245677
Q ss_pred HHHHHHhhcCChHHHHHHHHhcc---------CCCCh-hhHHHHHHHHhhhCChHHHHHHHHHHHh
Q 011249 387 CMVDLLGRSGQLEKAHSLIMDYK---------DFCDA-GTWGALLGACKVHVNAELGEIAARHLLE 442 (490)
Q Consensus 387 ~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (490)
.|...|...|++++|..++++.. ..|+. .+...+..++...+.+++|+..|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999988887655 22322 2445556677788899999999998876
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.73 E-value=0.0001 Score=53.19 Aligned_cols=67 Identities=12% Similarity=-0.060 Sum_probs=48.4
Q ss_pred CCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 380 PLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 380 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
.+...+..+..+|...|++++|++.|++.. .+.+...|..+..++...|++++|++.+++++++.|.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 345566677777777788888888777665 3445667777777788888888888888888776543
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.71 E-value=6.4e-05 Score=70.07 Aligned_cols=84 Identities=7% Similarity=-0.069 Sum_probs=62.4
Q ss_pred hcCChHHHHHHHHhcc---------CCCC-hhhHHHHHHHHhhhCChHHHHHHHHHHHh-----cCCCCC---chHHHHH
Q 011249 394 RSGQLEKAHSLIMDYK---------DFCD-AGTWGALLGACKVHVNAELGEIAARHLLE-----LGPEKT---GNSALLA 455 (490)
Q Consensus 394 ~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~ 455 (490)
..|++++|..++++.. ..|+ ..+++.++.+|...|++++|+.+++++++ .+|++| ..++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467777777776543 1222 34778888888888999999988888876 346555 4677888
Q ss_pred HHHHhcCCcchHHHHHHHhhhc
Q 011249 456 NIYASMGKWKDSEIVKMMISET 477 (490)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~~~~ 477 (490)
.+|..+|++++|+.++++..+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 8899999999999998877653
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.68 E-value=4.4e-05 Score=54.90 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=55.9
Q ss_pred HHHHHhhhCChHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHhcCCcchHHHHHHHhhhcccc
Q 011249 420 LLGACKVHVNAELGEIAARHLLELGPEKTG-NSALLANIYASMGKWKDSEIVKMMISETEKK 480 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 480 (490)
....+...|++++|++.++++++.+|+++. ++..++.+|...|++++|.+.+++..+.++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 456778899999999999999999999999 9999999999999999999999999877553
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.60 E-value=0.00015 Score=67.77 Aligned_cols=87 Identities=8% Similarity=-0.033 Sum_probs=58.3
Q ss_pred HHHhhcCChHHHHHHHHhcc------CCC----ChhhHHHHHHHHhhhCChHHHHHHHHHHHh-----cCCCCC---chH
Q 011249 390 DLLGRSGQLEKAHSLIMDYK------DFC----DAGTWGALLGACKVHVNAELGEIAARHLLE-----LGPEKT---GNS 451 (490)
Q Consensus 390 ~~~~~~g~~~~A~~~~~~~~------~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~ 451 (490)
..+.+.|++++|..++++.. ..| ...+++.++.+|...|++++|+.+++++++ .+|++| ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34456677777777765543 111 134667777777778888888888887775 345554 356
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 452 ALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
+.|+.+|...|++++|+.++++..+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7778888888888888888777654
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.53 E-value=0.00054 Score=63.85 Aligned_cols=95 Identities=15% Similarity=-0.018 Sum_probs=72.1
Q ss_pred CCCChHHHHHHHHHHHHHc--CCCCC----chHHHHHHHHHhhcCChHHHHHHHHhcc---------CCCC-hhhHHHHH
Q 011249 358 HGGLVEDGCKQFELMTRVF--GIKPL----TEHLTCMVDLLGRSGQLEKAHSLIMDYK---------DFCD-AGTWGALL 421 (490)
Q Consensus 358 ~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~ 421 (490)
..|++++|+.++++..+.. -+.|+ ..+++.|+.+|...|++++|..++++.. ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4678888888888876632 12222 4567888899999999999999887765 2333 34788899
Q ss_pred HHHhhhCChHHHHHHHHHHHh-----cCCCCCchHH
Q 011249 422 GACKVHVNAELGEIAARHLLE-----LGPEKTGNSA 452 (490)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 452 (490)
..|...|++++|+.+++++++ .+|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999987 5688776443
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.39 E-value=0.0039 Score=55.77 Aligned_cols=137 Identities=9% Similarity=-0.063 Sum_probs=72.5
Q ss_pred ChhHHHHHHHHH--HhcC---ChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHhc----CCC----ChHHHHHHHHHHHHH
Q 011249 310 DVISYSSMITAF--ADHG---KSQEALDMFLKMRNEGIEPNQ-VTFIGVLTACS----HGG----LVEDGCKQFELMTRV 375 (490)
Q Consensus 310 ~~~~~~~l~~~~--~~~~---~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~----~~g----~~~~a~~~~~~~~~~ 375 (490)
+...|...+.+. ...+ +..+|..+|++.++. .|+. ..+..+..+|. ..+ ........++.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 555565555543 2222 357788888888873 6653 34443333332 000 011111111111110
Q ss_pred cCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc-CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCC
Q 011249 376 FGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK-DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKT 448 (490)
Q Consensus 376 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 448 (490)
...+.++..+..+...+...|++++|...+++.. ..|+...|..+...+...|++++|.+.++++..++|..+
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1224455566666555556677777777776665 335555555566666677777777777777777777643
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.39 E-value=0.00099 Score=48.23 Aligned_cols=75 Identities=13% Similarity=0.053 Sum_probs=58.0
Q ss_pred CchHHHHHHHHHhhcCChHHHHHHHHhcc---------CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchH
Q 011249 381 LTEHLTCMVDLLGRSGQLEKAHSLIMDYK---------DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNS 451 (490)
Q Consensus 381 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 451 (490)
+..-+..++..+...|+++.|...|+... ..+...++..+..++.+.|+++.|...++++++..|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 33445567777777777777777776544 123456888999999999999999999999999999998876
Q ss_pred HHHH
Q 011249 452 ALLA 455 (490)
Q Consensus 452 ~~l~ 455 (490)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6665
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.37 E-value=0.00079 Score=62.81 Aligned_cols=101 Identities=12% Similarity=-0.081 Sum_probs=76.4
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHc--CCCCC----chHHHHHHHHHhhcCChHHHHHHHHhcc---------CCCC-hhh
Q 011249 353 LTACSHGGLVEDGCKQFELMTRVF--GIKPL----TEHLTCMVDLLGRSGQLEKAHSLIMDYK---------DFCD-AGT 416 (490)
Q Consensus 353 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~ 416 (490)
+..+...|++++|+..+++..+.. -+.|+ ..+++.++.+|...|++++|+.++++.. ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556789999999998887531 12232 4567888899999999999999987765 2233 347
Q ss_pred HHHHHHHHhhhCChHHHHHHHHHHHh-----cCCCCCchHHH
Q 011249 417 WGALLGACKVHVNAELGEIAARHLLE-----LGPEKTGNSAL 453 (490)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~ 453 (490)
++.|...|...|++++|+.+++++++ .+|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88899999999999999999999987 57888765544
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.36 E-value=0.011 Score=60.66 Aligned_cols=152 Identities=14% Similarity=0.076 Sum_probs=104.0
Q ss_pred HHhcCCHHHHHH-HHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhc
Q 011249 127 YTKIGLMDDAQR-LFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEI 205 (490)
Q Consensus 127 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 205 (490)
....+++++|.+ ++..+. +......++..+.+.|..+.|+++.+. . ..-.......|++++|.++.+.+
T Consensus 609 ~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~ 678 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDE 678 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhh
Confidence 456789999988 664443 122337778888889999998876632 1 12244567789999999998776
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHH
Q 011249 206 SEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNA 285 (490)
Q Consensus 206 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 285 (490)
.+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++.+.....|. ++.
T Consensus 679 --~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~ 741 (814)
T 3mkq_A 679 --SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNL 741 (814)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHH
T ss_pred --CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHH
Confidence 4668999999999999999999999998753 23344445557777776666655555441 233
Q ss_pred HHHHHHhcCChHHHHHHHhc
Q 011249 286 LIHMHSKCGYLDLAWREFSR 305 (490)
Q Consensus 286 l~~~~~~~~~~~~A~~~~~~ 305 (490)
...+|.+.|++++|.+++.+
T Consensus 742 A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 742 AFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 34456667777777765543
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.25 E-value=0.0009 Score=59.84 Aligned_cols=135 Identities=10% Similarity=-0.054 Sum_probs=92.9
Q ss_pred CCcHHHHHHHHHHh--cCC---CChHHHHHHHHHHHHHcCCCCC-chHHHHHHHHHhh---cC-----Ch---HHHHHHH
Q 011249 343 EPNQVTFIGVLTAC--SHG---GLVEDGCKQFELMTRVFGIKPL-TEHLTCMVDLLGR---SG-----QL---EKAHSLI 405 (490)
Q Consensus 343 ~p~~~~~~~l~~~~--~~~---g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g-----~~---~~A~~~~ 405 (490)
+.+...|...+++. ... ....+|..+|+++.+. .|+ ...+..+..+|.- .+ .. ..+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 44556666666553 333 3457899999999874 554 3445444444421 11 11 1122211
Q ss_pred Hhcc-CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccccc
Q 011249 406 MDYK-DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKKK 481 (490)
Q Consensus 406 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 481 (490)
..+. .+.++.++..+...+...|++++|...+++++.++|+ ...|..++.++.-.|++++|.+.+++....++..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 2222 4567778888887788889999999999999999975 6777889999999999999999999988776633
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.23 E-value=0.0012 Score=56.42 Aligned_cols=87 Identities=10% Similarity=0.026 Sum_probs=60.8
Q ss_pred HHHHHHHHhcc-CCCC---hhhHHHHHHHHhh-----hCChHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-CCcchH
Q 011249 399 EKAHSLIMDYK-DFCD---AGTWGALLGACKV-----HVNAELGEIAARHLLELGPEK-TGNSALLANIYASM-GKWKDS 467 (490)
Q Consensus 399 ~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 467 (490)
.+|...+++.. ..|+ ...|..+...|.. -|+.++|.+.|+++++++|+. +.++..++..++.. |++++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 34444454444 3333 4566677766766 488888888888888888864 88888888888774 888888
Q ss_pred HHHHHHhhhcccccCCCc
Q 011249 468 EIVKMMISETEKKKSPGC 485 (490)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~ 485 (490)
.+.+++.....+...|+.
T Consensus 260 ~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 260 DEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHcCCCCCCCCh
Confidence 888888877766655653
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.14 E-value=0.0044 Score=43.56 Aligned_cols=71 Identities=7% Similarity=-0.042 Sum_probs=55.4
Q ss_pred CCCchHHHHHHHHHhhcCC---hHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCc
Q 011249 379 KPLTEHLTCMVDLLGRSGQ---LEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTG 449 (490)
Q Consensus 379 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 449 (490)
+.++..+..+..++...++ .++|..++++.. .+.++.....+...+...|++++|+..|+++++.+|.++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 4566777777777754444 688888888776 5566778888888899999999999999999999888443
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.12 E-value=0.0026 Score=48.82 Aligned_cols=91 Identities=15% Similarity=-0.063 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcC---ChHHHHHHHHhcc-CC-C--ChhhHHHHHHHHhhhCChHHHH
Q 011249 362 VEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSG---QLEKAHSLIMDYK-DF-C--DAGTWGALLGACKVHVNAELGE 434 (490)
Q Consensus 362 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~g~~~~a~ 434 (490)
...+.+.|.+..+ .-+++..+...+..++.+.+ +.++++.+++.+. .. | ....+-.+..++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555554 23366677777777777777 5567887777665 22 3 3456666777889999999999
Q ss_pred HHHHHHHhcCCCCCchHHHH
Q 011249 435 IAARHLLELGPEKTGNSALL 454 (490)
Q Consensus 435 ~~~~~~~~~~p~~~~~~~~l 454 (490)
+.++.+++.+|++..+....
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHH
Confidence 99999999999887655443
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.02 E-value=0.03 Score=41.30 Aligned_cols=140 Identities=10% Similarity=0.063 Sum_probs=91.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHH
Q 011249 322 ADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKA 401 (490)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 401 (490)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+-+.+ ..+|+....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 4467788888888887763 24445555554444444555555666665442222 123444444
Q ss_pred HHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcccc
Q 011249 402 HSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMISETEKK 480 (490)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 480 (490)
...+-.+. .+....+..+......|.-+.-.+++..++...|.+|.++..++.+|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44443332 344555666677788888888888888877777777889999999999999999999999988888763
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.00 E-value=0.0013 Score=50.49 Aligned_cols=81 Identities=15% Similarity=-0.016 Sum_probs=66.2
Q ss_pred HHHHHHHHhcc--CCCChhhHHHHHHHHhhhC---ChHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCCcchHHHHH
Q 011249 399 EKAHSLIMDYK--DFCDAGTWGALLGACKVHV---NAELGEIAARHLLELG-P-EKTGNSALLANIYASMGKWKDSEIVK 471 (490)
Q Consensus 399 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (490)
..+.+.|.+.. ..++..+...+.+++.+.+ +.++++.+++.+.+.+ | ++...+..|+-++.+.|++++|.+++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 44455554432 3567888888999998877 7779999999999988 7 56889999999999999999999999
Q ss_pred HHhhhccc
Q 011249 472 MMISETEK 479 (490)
Q Consensus 472 ~~~~~~~~ 479 (490)
+.+.+..+
T Consensus 95 ~~lL~ieP 102 (152)
T 1pc2_A 95 RGLLQTEP 102 (152)
T ss_dssp HHHHHHCT
T ss_pred HHHHhcCC
Confidence 99987644
No 226
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.89 E-value=0.36 Score=46.99 Aligned_cols=314 Identities=8% Similarity=-0.027 Sum_probs=175.9
Q ss_pred HHhcCCHHHHHHHHhhcCCCCHh---HHHHHHHHHHhCCChHHHHHHHHHhccC--CchhHHHHHHHHHhcCChhHHHHH
Q 011249 127 YTKIGLMDDAQRLFDSMAERNVI---SWSAMVAGYANCGNMKAAKEFYDRMTEK--NSVTWVAMIAGYGKCGEVREAKKV 201 (490)
Q Consensus 127 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~ 201 (490)
..+.|+++.+..+...+..-... .|..+...+ .....+++..++++-... ....-...+..+.+.+++...+.+
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~ 94 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAF 94 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHh
Confidence 35678998888887777542122 343333222 222456666666554321 122234556667778899999998
Q ss_pred HhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHH--HHHHHHHHHhcC----
Q 011249 202 FDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEM--AAILAKHVDEGC---- 275 (490)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~--a~~~~~~~~~~~---- 275 (490)
+.. ...+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|.+.. ...-++.+...+
T Consensus 95 ~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~ 172 (618)
T 1qsa_A 95 SPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGL 172 (618)
T ss_dssp CCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHH
T ss_pred ccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 877 44556666667778888899888877777766554 3345566677777776665433 222222333322
Q ss_pred -------CCCchh-HHHHHHHHHHhcCChHHHHHHHhcccCCChh---HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CC
Q 011249 276 -------CDRTNY-VSNALIHMHSKCGYLDLAWREFSRIKNKDVI---SYSSMITAFADHGKSQEALDMFLKMRNEG-IE 343 (490)
Q Consensus 276 -------~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~ 343 (490)
++++.. ....++..+.+ ...+....... .++.. .+...+.-+.+ .+.+.|...+....+.+ +.
T Consensus 173 a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~ 247 (618)
T 1qsa_A 173 VTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLN 247 (618)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCC
Confidence 111111 11222222221 22222222221 11211 11112222333 47899999999887543 33
Q ss_pred CcHH--HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCC--ChhhHHH
Q 011249 344 PNQV--TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFC--DAGTWGA 419 (490)
Q Consensus 344 p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~ 419 (490)
+... ....+.......+...++...+..... ..++.....-.+....+.|+++.|...|+.|...+ ...-.--
T Consensus 248 ~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW 324 (618)
T 1qsa_A 248 EDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYW 324 (618)
T ss_dssp HHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHH
Confidence 2222 333444455566645566677776544 22343344445555667899999999999998432 2333344
Q ss_pred HHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 011249 420 LLGACKVHVNAELGEIAARHLLELGPEKTGNSALLA 455 (490)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 455 (490)
+..+....|+.++|..+|+++.+ + .++|..++
T Consensus 325 ~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lA 356 (618)
T 1qsa_A 325 QADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVA 356 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHH
Confidence 55677888999999999999976 3 34555553
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.86 E-value=0.023 Score=58.19 Aligned_cols=155 Identities=13% Similarity=0.071 Sum_probs=85.1
Q ss_pred HHHhcCChHHHHH-HHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChH
Q 011249 219 CYVQNGYAKAAIE-MYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLD 297 (490)
Q Consensus 219 ~~~~~g~~~~A~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 297 (490)
.....+++++|.+ ++.. .|+......++..+.+.|.++.|.++.+. .. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHH
Confidence 3345666666655 3311 11012225555556666666666655421 11 1123345668888
Q ss_pred HHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcC
Q 011249 298 LAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFG 377 (490)
Q Consensus 298 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 377 (490)
.|.++.+.+. +...|..+...+.+.++++.|++.|.++.. |..+...+...|+.+...++-+..... |
T Consensus 670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~ 737 (814)
T 3mkq_A 670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G 737 (814)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C
Confidence 8888776653 456788888888888888888888887653 223333344456665544444444331 1
Q ss_pred CCCCchHHHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 378 IKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 378 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
.++....+|...|++++|++++.++.
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred ------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 12333344555666666666655543
No 228
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.67 E-value=0.00014 Score=66.47 Aligned_cols=258 Identities=12% Similarity=0.071 Sum_probs=146.2
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhcCC--CCHHhHHHHHHHHHhcCC
Q 011249 148 VISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISE--PDASCWAAMTVCYVQNGY 225 (490)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 225 (490)
+..|..|..+....+.+.+|++.|= +..|+..|..++....+.|.+++-.+.+....+ .++..=+.|+.+|++.++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 131 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCc
Confidence 3456777777777777777766552 234666677777777777777777777776665 455555677777777777
Q ss_pred hHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 011249 226 AKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSR 305 (490)
Q Consensus 226 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 305 (490)
..+-.+++ ..|+..-...+..-|...|.++.|.-+|..+... .-|...+.+.|++..|.+.-++
T Consensus 132 L~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~---------akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 132 LAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF---------GRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp SSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC---------TTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccH---------HHHHHHHHHHHHHHHHHHHHHh
Confidence 65543332 1356656666777777777777766666544221 1233334444554444332222
Q ss_pred ccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHH
Q 011249 306 IKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHL 385 (490)
Q Consensus 306 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 385 (490)
. .++.+|..+-.+|...+.+.-|.-.--.++- .|+ ....++..|...|.+++-+.+++.... .-.....+|
T Consensus 196 A--ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmF 266 (624)
T 3lvg_A 196 A--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALG--LERAHMGMF 266 (624)
T ss_dssp C--CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHH
T ss_pred c--CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHH
Confidence 2 3556777777777777776665544444431 222 122345556677777776666666542 122345556
Q ss_pred HHHHHHHhhcCChHHHHHHHHhcc----CC------CChhhHHHHHHHHhhhCChHHH
Q 011249 386 TCMVDLLGRSGQLEKAHSLIMDYK----DF------CDAGTWGALLGACKVHVNAELG 433 (490)
Q Consensus 386 ~~l~~~~~~~g~~~~A~~~~~~~~----~~------~~~~~~~~l~~~~~~~g~~~~a 433 (490)
+-|.-.|++- ++++.++.++..- .+ .....|.-+...|....+++.|
T Consensus 267 TELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 267 TELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp HHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 6666555543 4455555443322 11 1334555555555555555554
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.45 E-value=0.0087 Score=43.11 Aligned_cols=67 Identities=12% Similarity=-0.004 Sum_probs=55.8
Q ss_pred ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 413 DAGTWGALLGACKVHVNAELGEIAARHLLELG-------PEKTGNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
+..-...++..+...|+++.|..-++++++.. +..+.++..|+.++.+.|++++|..+++++.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34455678888999999999999999998853 34467899999999999999999999999876543
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.33 E-value=1.1 Score=45.53 Aligned_cols=249 Identities=11% Similarity=-0.047 Sum_probs=128.6
Q ss_pred HHhcCChhHHHHHHhhcCC----CCH--HhHHHHHHHHHhcCChHHHHHHHHHHHHcCc-------ccChhhHH--HHHH
Q 011249 189 YGKCGEVREAKKVFDEISE----PDA--SCWAAMTVCYVQNGYAKAAIEMYKVMRQENV-------RISEVAMV--GAIS 253 (490)
Q Consensus 189 ~~~~~~~~~A~~~~~~~~~----~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~p~~~~~~--~l~~ 253 (490)
.+..|+.++++.+++.... .+. ..-..+.-+.+..|..+++..++.......- .+....-. .|.-
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3445666677777766543 121 2233344555666666677777766554321 01111111 2222
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCch--hHHHHHHHHHHhcCChHHHHHHHhcccC-CChh--HHHHHHHHHHhcCChH
Q 011249 254 ACTQLGDVEMAAILAKHVDEGCCDRTN--YVSNALIHMHSKCGYLDLAWREFSRIKN-KDVI--SYSSMITAFADHGKSQ 328 (490)
Q Consensus 254 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~ 328 (490)
++.-.++ +++...+..+.... .... ..-.+|...+...|+-+....++..+.+ .+.. -...+.-++...|+.+
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 2333333 34445555444322 1111 1222344455666777666666665443 2222 2233334555778888
Q ss_pred HHHHHHHHHHHcCCCCcHH--HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHH
Q 011249 329 EALDMFLKMRNEGIEPNQV--TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIM 406 (490)
Q Consensus 329 ~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 406 (490)
.+..+.+.+... ..|... ....+.-+|+..|+.....+++..+.. ....+..-...+.-++...|+.+.+.++++
T Consensus 542 ~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 542 LADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 888888887763 122222 222345568888888777778888876 333333333344445556777777777777
Q ss_pred hccCCCChhhHHHHHH--HHhhhCCh-HHHHHHHHHHHh
Q 011249 407 DYKDFCDAGTWGALLG--ACKVHVNA-ELGEIAARHLLE 442 (490)
Q Consensus 407 ~~~~~~~~~~~~~l~~--~~~~~g~~-~~a~~~~~~~~~ 442 (490)
.+....++.+-..... +....|+. .+++..+..+..
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6653334433333322 23333433 567777777754
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.28 E-value=0.18 Score=37.33 Aligned_cols=137 Identities=11% Similarity=0.084 Sum_probs=79.1
Q ss_pred HhcCCHHHHHHHHhhcCCC-CHhHHHHHHHHHHhCCChHHHHHHHHHhccC-CchhHHHHHHHHHhcCChhHHHHHHhhc
Q 011249 128 TKIGLMDDAQRLFDSMAER-NVISWSAMVAGYANCGNMKAAKEFYDRMTEK-NSVTWVAMIAGYGKCGEVREAKKVFDEI 205 (490)
Q Consensus 128 ~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 205 (490)
.-.|.+++..++..+...+ +..-||-++--....-+-+-..++++.+-+- |. ..+|++......+-.+
T Consensus 18 ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C~NlKrVi~C~~~~ 87 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVECGVIN 87 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHHHHHT
T ss_pred HHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCc----------HhhhcHHHHHHHHHHh
Confidence 3456666666666655542 4445555555555555555555555555432 21 1223333333333332
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCC
Q 011249 206 SEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCC 276 (490)
Q Consensus 206 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 276 (490)
.. +....+.-+......|+-++-.+++..+... .+|++.....+..+|.+.|+..++..++.++-+.|+
T Consensus 88 n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 88 NT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp TC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 22 2234455566777777777777777775442 366777777788888888888888888887777764
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.22 Score=39.17 Aligned_cols=128 Identities=14% Similarity=0.104 Sum_probs=74.6
Q ss_pred HHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHH
Q 011249 289 MHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQ 368 (490)
Q Consensus 289 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 368 (490)
.....|+++.|.++.+.+ .+...|..+.......|+++-|.+.|++... +..+.-.|...|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345667777777776655 3566778888877788888888877776543 22333334445666555444
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHH
Q 011249 369 FELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHL 440 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (490)
-+..... | -++.....+.-.|+++++.++|.+...-|.. .......|..+.|.++.+.+
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 4433331 1 2333445556678888888887666521211 11123356677777776655
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.19 E-value=0.021 Score=43.22 Aligned_cols=109 Identities=8% Similarity=-0.038 Sum_probs=78.3
Q ss_pred cHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHHcCCCCCch-HHHHHHH------HHhhcCChHHHHHHHHhcc--
Q 011249 345 NQVTFIGVLTACSHGGLV------EDGCKQFELMTRVFGIKPLTE-HLTCMVD------LLGRSGQLEKAHSLIMDYK-- 409 (490)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~-- 409 (490)
|..+|-..+....+.|++ ++..++|+++.. .+||+.. .+...+. .+...++.++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 556777777777777888 888899998888 6777632 1122222 2245688999999998875
Q ss_pred CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 011249 410 DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLA 455 (490)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 455 (490)
.+.=..+|.....--.+.|+..+|.+++.+++.+.|.....+...+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 2222667777777778899999999999999999988666555554
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.35 Score=38.09 Aligned_cols=102 Identities=13% Similarity=0.054 Sum_probs=54.7
Q ss_pred HHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHH
Q 011249 188 GYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAIL 267 (490)
Q Consensus 188 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 267 (490)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+...++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345566666666665554 3455677777777777777777666665432 22233334445555555555
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcc
Q 011249 268 AKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRI 306 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 306 (490)
-+.....| . ++.....+...|+++++.++|.+.
T Consensus 83 a~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 44444443 1 222333444456666666655443
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.01 E-value=0.077 Score=39.09 Aligned_cols=90 Identities=14% Similarity=-0.070 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHH---HHHHHHhccCC--C--ChhhHHHHHHHHhhhCChHHHHH
Q 011249 363 EDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEK---AHSLIMDYKDF--C--DAGTWGALLGACKVHVNAELGEI 435 (490)
Q Consensus 363 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~a~~ 435 (490)
..+.+.+...... +. ++..+-..+..++.+..+... ++.+++.+... | .....-.+.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444555544442 33 666666667777777766555 67777666522 2 22344556678899999999999
Q ss_pred HHHHHHhcCCCCCchHHHH
Q 011249 436 AARHLLELGPEKTGNSALL 454 (490)
Q Consensus 436 ~~~~~~~~~p~~~~~~~~l 454 (490)
.++.+++.+|+|..+....
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHH
Confidence 9999999999987765543
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.65 E-value=0.1 Score=39.45 Aligned_cols=98 Identities=9% Similarity=0.141 Sum_probs=67.2
Q ss_pred CChhHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCcHH----HHHHH-HH--HhcCCCChHHHHHHHHHHHHH
Q 011249 309 KDVISYSSMITAFADHGKS------QEALDMFLKMRNEGIEPNQV----TFIGV-LT--ACSHGGLVEDGCKQFELMTRV 375 (490)
Q Consensus 309 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~p~~~----~~~~l-~~--~~~~~g~~~~a~~~~~~~~~~ 375 (490)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+ +. .+...++.++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5778888888888877888 8888888888875 666531 11111 10 123347888889999888774
Q ss_pred cCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 376 FGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 376 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
+-.- ...|......-.+.|++..|.+++.+..
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 3222 6666666667778899999999887665
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.45 E-value=0.036 Score=40.81 Aligned_cols=83 Identities=16% Similarity=-0.008 Sum_probs=63.7
Q ss_pred ChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCCcchHHH
Q 011249 397 QLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAEL---GEIAARHLLELG-P-EKTGNSALLANIYASMGKWKDSEI 469 (490)
Q Consensus 397 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~ 469 (490)
....+.+-|.... ..++..+--.+.+++.+..+... ++.+++.+.+.+ | ........|+-++.+.|+|++|.+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344445554332 35778888888889988776555 999999999877 5 456788889999999999999999
Q ss_pred HHHHhhhccc
Q 011249 470 VKMMISETEK 479 (490)
Q Consensus 470 ~~~~~~~~~~ 479 (490)
.++.+.+..+
T Consensus 96 ~~~~lL~~eP 105 (126)
T 1nzn_A 96 YVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhCC
Confidence 9999987544
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.1 Score=51.84 Aligned_cols=55 Identities=11% Similarity=-0.064 Sum_probs=51.2
Q ss_pred HHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhh
Q 011249 421 LGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMIS 475 (490)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (490)
..-|...|+++.|+++.+++...-|.+...|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3456778999999999999999999999999999999999999999999999885
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.10 E-value=3.4 Score=42.09 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=11.6
Q ss_pred HHHHHHhCCChHHHHHHHHHhc
Q 011249 154 MVAGYANCGNMKAAKEFYDRMT 175 (490)
Q Consensus 154 l~~~~~~~~~~~~a~~~~~~~~ 175 (490)
++.++.+.++.+.+.++|.++.
T Consensus 236 a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 236 LNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4444455555555555555543
No 240
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.91 E-value=0.31 Score=41.86 Aligned_cols=64 Identities=11% Similarity=0.014 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhc-----CChHHHHHHHHHHHHcCcccChhhHHHHHHHHhc-cCChHHHHHHHHHHHhcC
Q 011249 212 CWAAMTVCYVQN-----GYAKAAIEMYKVMRQENVRISEVAMVGAISACTQ-LGDVEMAAILAKHVDEGC 275 (490)
Q Consensus 212 ~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~ 275 (490)
.|..+...|.+. |+.++|.+.|++..+.+..-+..++......++. .|+.+++.+.+++.....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 444444444442 4555555555554443221123344444444444 244555555555544443
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.96 E-value=0.16 Score=39.25 Aligned_cols=29 Identities=21% Similarity=0.099 Sum_probs=24.5
Q ss_pred CchHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 448 TGNSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
.+.-..++.+|.+.|++++|+.+++.+..
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 35667799999999999999999987643
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.58 E-value=0.48 Score=36.67 Aligned_cols=124 Identities=6% Similarity=-0.106 Sum_probs=64.7
Q ss_pred HHHHHHhcCChHHHHHHHhcccC-----CCh-------hHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHH-HHHH
Q 011249 286 LIHMHSKCGYLDLAWREFSRIKN-----KDV-------ISYSSMITAFADHGKSQEALDMFLKMRNEG-IEPNQV-TFIG 351 (490)
Q Consensus 286 l~~~~~~~~~~~~A~~~~~~~~~-----~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~-~~~~ 351 (490)
=+..+...|.++.|+-+.+.+.. ++. .++..+.+++...+++..|...|++.++.. .-+... +...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 35566667777777766665432 221 245556667777777777777777765421 111111 1100
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccC-CCChhhHHHHHHH
Q 011249 352 VLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKD-FCDAGTWGALLGA 423 (490)
Q Consensus 352 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~ 423 (490)
+. ....... . .....+.+.-..+..+|.+.|++++|+.+++.++. ..++.+-..|.+.
T Consensus 106 ~~----~~ss~p~---------s-~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 106 TG----NSASTPQ---------S-QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANL 164 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHH
T ss_pred cc----ccCCCcc---------c-ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHH
Confidence 00 0000000 0 02233445556688889999999999999998872 3344444444433
No 243
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.43 E-value=6.1 Score=38.45 Aligned_cols=170 Identities=6% Similarity=-0.120 Sum_probs=97.6
Q ss_pred CChHHHHHHHhcccC---CChh----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHH
Q 011249 294 GYLDLAWREFSRIKN---KDVI----SYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGC 366 (490)
Q Consensus 294 ~~~~~A~~~~~~~~~---~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 366 (490)
.+.+.|...+....+ -+.. .+..++..+...+...++...+...... .++.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 478999999977643 1222 2333333344445356667777765553 344433444444445679999999
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 367 KQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
..|..+... ......-..-+.+++...|+.++|..+|+.+.. + .+|-.++. ..+.|..-.. ......+.
T Consensus 306 ~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~-~--~~fYg~lA-a~~Lg~~~~~-----~~~~~~~~ 374 (618)
T 1qsa_A 306 TWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-Q--RGFYPMVA-AQRIGEEYEL-----KIDKAPQN 374 (618)
T ss_dssp HHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-S--CSHHHHHH-HHHTTCCCCC-----CCCCCCSC
T ss_pred HHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc-C--CChHHHHH-HHHcCCCCCC-----CCCCCChh
Confidence 999988652 112233344577888899999999999999884 3 23443332 2233321000 00011111
Q ss_pred CCc-----hHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 447 KTG-----NSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 447 ~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
... .-...+..+...|...+|...+..+.+
T Consensus 375 ~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 111 122345678889999999888877654
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.10 E-value=0.79 Score=34.40 Aligned_cols=77 Identities=13% Similarity=-0.008 Sum_probs=54.8
Q ss_pred CCCCCchHHHHHHHHHhhcCChH---HHHHHHHhcc-CCC--ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCch
Q 011249 377 GIKPLTEHLTCMVDLLGRSGQLE---KAHSLIMDYK-DFC--DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGN 450 (490)
Q Consensus 377 ~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 450 (490)
+-.|+..+--.+..++.+..+.+ +++.+++.+. ..| .....-.+..++.+.|++++|.++.+.+++.+|+|..+
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 33567777777777888777544 5677777665 233 23345556678899999999999999999999998765
Q ss_pred HHH
Q 011249 451 SAL 453 (490)
Q Consensus 451 ~~~ 453 (490)
...
T Consensus 114 ~~L 116 (144)
T 1y8m_A 114 GAL 116 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.71 E-value=0.23 Score=36.78 Aligned_cols=75 Identities=12% Similarity=-0.028 Sum_probs=51.9
Q ss_pred CCCchHHHHHHHHHhhcCCh---HHHHHHHHhcc-CCC--ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHH
Q 011249 379 KPLTEHLTCMVDLLGRSGQL---EKAHSLIMDYK-DFC--DAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSA 452 (490)
Q Consensus 379 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 452 (490)
.|++.+--.+..++.+..+. .+++.+++.+. ..| ....+--+..++.+.|++++|.+..+.+++..|+|..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 45556666667777776654 45677776655 223 2345566677888999999999999999999998776544
Q ss_pred H
Q 011249 453 L 453 (490)
Q Consensus 453 ~ 453 (490)
.
T Consensus 117 L 117 (134)
T 3o48_A 117 L 117 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.50 E-value=0.25 Score=45.27 Aligned_cols=56 Identities=13% Similarity=0.024 Sum_probs=27.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHH
Q 011249 386 TCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLL 441 (490)
Q Consensus 386 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (490)
..++..+...|++++|...+..+. .+-+...+..++.++...|+..+|++.|+++.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444455555555555444433 23344455555555555555555555555443
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.33 E-value=5.5 Score=35.06 Aligned_cols=181 Identities=12% Similarity=0.060 Sum_probs=108.2
Q ss_pred HHHhCCCh---HHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHH--
Q 011249 157 GYANCGNM---KAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIE-- 231 (490)
Q Consensus 157 ~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-- 231 (490)
.....|++ =+|.+.+ .++..-|.+.+++++|++++-. -...+.+.|+...+-+
T Consensus 21 ~~I~~G~y~~~YEAHQ~~-----------RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~ 78 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQET-----------RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLA 78 (336)
T ss_dssp HHHHHCCHHHHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCccccHHHHHH-----------HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHH
Confidence 34455666 4555544 4566778888999998887642 3345666677655444
Q ss_pred --HHHHHHHcCcccChhhHHHHHHHHhccCChH-HHHHHHHHHH----hcC--CCCchhHHHHHHHHHHhcCChHHHHHH
Q 011249 232 --MYKVMRQENVRISEVAMVGAISACTQLGDVE-MAAILAKHVD----EGC--CDRTNYVSNALIHMHSKCGYLDLAWRE 302 (490)
Q Consensus 232 --~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 302 (490)
+++-+.+.++++|......++..+.....-+ .-..+.+.+. +.| ..-++.....+...|.+.+++.+|+..
T Consensus 79 ~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 79 VLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 3455566788888888888888777655422 1122333332 222 334677888899999999999999988
Q ss_pred HhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 011249 303 FSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTR 374 (490)
Q Consensus 303 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 374 (490)
|-.-.++.+..+..++--+...+... .++...-..++. |...++...|...++...+
T Consensus 159 ~ilg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 159 LVLGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTTSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 85322233355655544443333211 122223333333 4456788888887776665
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.05 E-value=4.2 Score=37.91 Aligned_cols=186 Identities=9% Similarity=0.059 Sum_probs=119.0
Q ss_pred cCChHHHHHHHHHHHHc-----CcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHH----HHhc
Q 011249 223 NGYAKAAIEMYKVMRQE-----NVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHM----HSKC 293 (490)
Q Consensus 223 ~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~ 293 (490)
.|+++.|++.+..+.+. ...-.......++..|...|+++.....+..+.+..-.. ......+++. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 37889999888777653 223345667788999999999999988887765432122 2222333332 2223
Q ss_pred CChH--HHHHHHhcccC---C-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCcH---HHHHHHHHHh
Q 011249 294 GYLD--LAWREFSRIKN---K-------DVISYSSMITAFADHGKSQEALDMFLKMRN--EGIEPNQ---VTFIGVLTAC 356 (490)
Q Consensus 294 ~~~~--~A~~~~~~~~~---~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~p~~---~~~~~l~~~~ 356 (490)
...+ .-..+.+.+.. . .......|...+...|++.+|..++..+.. .|..+.. ..+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3322 22333333322 1 112345678889999999999999999875 2332222 3566677789
Q ss_pred cCCCChHHHHHHHHHHHHH-cCCCCC----chHHHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 357 SHGGLVEDGCKQFELMTRV-FGIKPL----TEHLTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 357 ~~~g~~~~a~~~~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
...+++..|..++.++... +...++ ...+...+..+...+++.+|-+.|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999987532 122222 2345667778888899999988876654
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.03 E-value=2.5 Score=31.76 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCCcchHHHHHHHhhh
Q 011249 432 LGEIAARHLLELGPE-KTGNSALLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 432 ~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
+++.+++.+....|. ....+..|+-++.+.|+|++|+++.+.+.+
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444442 223344444445555555555554444443
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.87 E-value=1.2 Score=32.93 Aligned_cols=45 Identities=13% Similarity=-0.012 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 364 DGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 364 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
+++.+++.+.+. +..-.......+.-++.+.|++++|.++.+.+.
T Consensus 61 ~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 61 LGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444442 211123333344445555555555555554443
No 251
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=91.64 E-value=4.5 Score=32.57 Aligned_cols=85 Identities=13% Similarity=0.220 Sum_probs=35.9
Q ss_pred hhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHH
Q 011249 141 DSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCY 220 (490)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 220 (490)
+.+..+|...-...+..+.+.++.+....+.+.+..++...-...+.++...++.+....+.+.+..++...-...+.++
T Consensus 21 ~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 21 KNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVAL 100 (201)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33333444444444444444444333333333333344444444444444444433333333333334444444444444
Q ss_pred HhcCC
Q 011249 221 VQNGY 225 (490)
Q Consensus 221 ~~~g~ 225 (490)
.+.++
T Consensus 101 ~~~~~ 105 (201)
T 3ltj_A 101 GQIGD 105 (201)
T ss_dssp HHHCC
T ss_pred HHhCc
Confidence 44443
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.50 E-value=6.3 Score=41.92 Aligned_cols=157 Identities=8% Similarity=0.002 Sum_probs=79.4
Q ss_pred HHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChH
Q 011249 183 VAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVE 262 (490)
Q Consensus 183 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 262 (490)
..++..+...+..+-+.++...... ++..-..+..++...|++++|.+.|++... |+..+.... ....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLR 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhc
Confidence 3455666677777777766655544 334445677888888888888888876532 111111000 0000
Q ss_pred HHHHHHHHHHhcC--CCCchhHHHHHHHHHHhcCChHHHHHHHhcccC----CCh----hHHHHHHHHHHhcCChHHHHH
Q 011249 263 MAAILAKHVDEGC--CDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN----KDV----ISYSSMITAFADHGKSQEALD 332 (490)
Q Consensus 263 ~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~ 332 (490)
. +..+.... ...-...|..++..+.+.+.++.+.++-....+ .+. ..|..+...+...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 00111110 011233455556666666666665554443321 111 245666666677777777776
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHhc
Q 011249 333 MFLKMRNEGIEPNQVTFIGVLTACS 357 (490)
Q Consensus 333 ~~~~~~~~~~~p~~~~~~~l~~~~~ 357 (490)
.+-.+.....+ ...+..|+...+
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lc 982 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLT 982 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHH
Confidence 66665543222 234444444433
No 253
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=91.25 E-value=5.2 Score=32.52 Aligned_cols=90 Identities=12% Similarity=0.212 Sum_probs=45.5
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHH
Q 011249 136 AQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAA 215 (490)
Q Consensus 136 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 215 (490)
...+.+.+..+|...-...+..+.+.|+.+..-.+.+.+..+|...-...+.++...++.+....+.+.+..++...-..
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~ 100 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQS 100 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHH
Confidence 33344444445555555555666666654444444444444555555555555555555444433444444455555445
Q ss_pred HHHHHHhcCC
Q 011249 216 MTVCYVQNGY 225 (490)
Q Consensus 216 l~~~~~~~g~ 225 (490)
.+.++.+.++
T Consensus 101 a~~aL~~~~~ 110 (211)
T 3ltm_A 101 AAVALGQIGD 110 (211)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhCc
Confidence 5555555444
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.25 E-value=7.1 Score=34.09 Aligned_cols=181 Identities=9% Similarity=0.088 Sum_probs=104.8
Q ss_pred HHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHH----HH
Q 011249 158 YANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIE----MY 233 (490)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~----~~ 233 (490)
-...|++=+|.+.+ .++..-|.+.+++++|++++.. -...+.+.|+...|-+ ++
T Consensus 23 ~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 23 KIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp HHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHH
Confidence 34445555555444 4456777778888888777642 3344566677655444 45
Q ss_pred HHHHHcCcccChhhHHHHHHHHhccCChH-HHHHHHHHHH----hcC--CCCchhHHHHHHHHHHhcCChHHHHHHHhcc
Q 011249 234 KVMRQENVRISEVAMVGAISACTQLGDVE-MAAILAKHVD----EGC--CDRTNYVSNALIHMHSKCGYLDLAWREFSRI 306 (490)
Q Consensus 234 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 306 (490)
+-..+.+++++......++..+.....-+ .-.++.+.+. +.| ...++.....+...|.+.|++.+|+..|-.-
T Consensus 81 ev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~ 160 (312)
T 2wpv_A 81 EVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG 160 (312)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC
Confidence 55556677888877777777765533211 1223333332 222 2246778888999999999999998877633
Q ss_pred cCCChhHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 011249 307 KNKDVISYSSMITAFADH---GKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRV 375 (490)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 375 (490)
...++..+..++--+... |...++- ...-..++. |.-.|+...|..+++...+.
T Consensus 161 ~~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 161 THDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 322455554444433333 3222211 111222222 44578899999988877654
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.13 E-value=8.7 Score=34.90 Aligned_cols=284 Identities=10% Similarity=0.002 Sum_probs=144.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCC--------CCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCcccChhhH----
Q 011249 182 WVAMIAGYGKCGEVREAKKVFDEISE--------PDASCWAAMTVCYVQNG-YAKAAIEMYKVMRQENVRISEVAM---- 248 (490)
Q Consensus 182 ~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~---- 248 (490)
...|+..|.+.|+.++..+++..... ........++..+.... ..+.-.++..+..+..-. +..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34555666666666666666655543 12233445555555432 233334444444332111 11222
Q ss_pred --HHHHHHHhccCChHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHHHhcCChHHHHHHHhcccC------CChhHHH
Q 011249 249 --VGAISACTQLGDVEMAAILAKHVDEGCCDRT-----NYVSNALIHMHSKCGYLDLAWREFSRIKN------KDVISYS 315 (490)
Q Consensus 249 --~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~ 315 (490)
..++..|...|++.+|.+++..+.+.-...| ..++..-+.+|...+++.++...+..... +++....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 1466777888888888887777765322222 23455567778888998888888866543 2332222
Q ss_pred ----HHHHHHH-hcCChHHHHHHHHHHHHc-C--CCCc---HHHHHHHHHHhcCCCChHHHHHHHH-HHHHHcCCCCCch
Q 011249 316 ----SMITAFA-DHGKSQEALDMFLKMRNE-G--IEPN---QVTFIGVLTACSHGGLVEDGCKQFE-LMTRVFGIKPLTE 383 (490)
Q Consensus 316 ----~l~~~~~-~~~~~~~a~~~~~~~~~~-~--~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~ 383 (490)
.-...+. ..++|..|...|-+..+. . ..|. ...|..+.. ... ++..+...++. .....+ ..|...
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll~-~~r~el~~~l~~~~~~~~-~~pei~ 257 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IML-GQSDDVNQLVSGKLAITY-SGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHT-TCGGGHHHHHHSHHHHTT-CSHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HHc-CCHHHHHHHhcccccccc-CCccHH
Confidence 1223456 788999998888776531 1 1121 113322222 222 23333323332 222212 344444
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 011249 384 HLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASM 461 (490)
Q Consensus 384 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 461 (490)
.+..++.+| ..+++.+...+++... ...|+.....+ ..+.+ .-. ...+.++ ..|-..-.+..++..+.-
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~-~~L~~-~Ir---~~~L~~i--~~pYsrIsl~~iA~~l~l- 328 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHL-GTLYD-TML---EQNLCRI--IEPYSRVQVAHVAESIQL- 328 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHH-HHHHH-HHH---HHHHHHH--HTTCSEEEHHHHHHHHTC-
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHH-HHHHH-HHH---HHHHHHH--hHhhceeeHHHHHHHHCc-
Confidence 455555554 4567777777776654 22233211111 00000 000 1111111 346666677777766654
Q ss_pred CCcchHHHHHHHhhhccc
Q 011249 462 GKWKDSEIVKMMISETEK 479 (490)
Q Consensus 462 g~~~~A~~~~~~~~~~~~ 479 (490)
..++++..+-+|...|.
T Consensus 329 -s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 329 -PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp -CHHHHHHHHHHHHHTTS
T ss_pred -CHHHHHHHHHHHHHCCC
Confidence 67889999988887753
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.90 E-value=7.9 Score=34.06 Aligned_cols=167 Identities=11% Similarity=0.001 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHH----HHHHHcCCCCcHHHHHHHHHHhcC
Q 011249 283 SNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMF----LKMRNEGIEPNQVTFIGVLTACSH 358 (490)
Q Consensus 283 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~p~~~~~~~l~~~~~~ 358 (490)
|.++..=|.+.+++++|++++..- ...+.+.|+...|-++- +...+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 444556678889999998876542 23455667666554443 555567788888888888877665
Q ss_pred CCChH-HHHHHHHHHHH---HcC--CCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChHH
Q 011249 359 GGLVE-DGCKQFELMTR---VFG--IKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAEL 432 (490)
Q Consensus 359 ~g~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (490)
...-+ .=..+++++.+ ++| ..-++.....+...|.+.+++.+|...|-. ...+.+..+..++.-+...+.
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-g~~~s~~~~a~mL~ew~~~~~--- 182 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-GTKESPEVLARMEYEWYKQDE--- 182 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-SCTTHHHHHHHHHHHHHHTSC---
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-cCCchHHHHHHHHHHHHHhcC---
Confidence 44311 11223333322 123 234567778899999999999999988842 223334566555554444332
Q ss_pred HHHHHHHHHhcCCCCCchHH-HHHHHHHhcCCcchHHHHHHHhhh
Q 011249 433 GEIAARHLLELGPEKTGNSA-LLANIYASMGKWKDSEIVKMMISE 476 (490)
Q Consensus 433 a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 476 (490)
|.....|. ..+--|.-.++...|..+++...+
T Consensus 183 ------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 ------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22233222 233346667788888887666554
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.39 E-value=10 Score=34.45 Aligned_cols=216 Identities=9% Similarity=0.003 Sum_probs=94.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCcccC-----hhhHHHHHHHHhccCChHHHHHHHHHHHhc--CCCCchhHH----
Q 011249 215 AMTVCYVQNGYAKAAIEMYKVMRQENVRIS-----EVAMVGAISACTQLGDVEMAAILAKHVDEG--CCDRTNYVS---- 283 (490)
Q Consensus 215 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~---- 283 (490)
-++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++..+...+...... .+.+++.+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 355666666666666666666654211111 123444445556666666666666655332 121222211
Q ss_pred HHHHHHHH-hcCChHHHHHHHhcccC-------C---ChhHHHHHHHHHHhcCChHHHHHHHH-HHHHcCCCCcHHHHHH
Q 011249 284 NALIHMHS-KCGYLDLAWREFSRIKN-------K---DVISYSSMITAFADHGKSQEALDMFL-KMRNEGIEPNQVTFIG 351 (490)
Q Consensus 284 ~~l~~~~~-~~~~~~~A~~~~~~~~~-------~---~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~p~~~~~~~ 351 (490)
..-+..+. ..+++..|...|-+..+ + +...|..+... .. ++..+.-.++. +....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL-l~-~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI-ML-GQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-HT-TCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-Hc-CCHHHHHHHhccccccccCCccHHHHHH
Confidence 11122344 56666666555543321 1 12233222222 22 22222222221 2111112455555666
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHHHHHHHhhhCChH
Q 011249 352 VLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVHVNAE 431 (490)
Q Consensus 352 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (490)
++.++. .+++.+...+++.... .+..|+.....+-..+.+ =.. ..+.++..+-...++..+...+.- ..+
T Consensus 262 L~~a~~-~~dl~~f~~iL~~~~~--~l~~D~~l~~h~~~L~~~--Ir~---~~L~~i~~pYsrIsl~~iA~~l~l--s~~ 331 (394)
T 3txn_A 262 VAEASH-KRSLADFQAALKEYKK--ELAEDVIVQAHLGTLYDT--MLE---QNLCRIIEPYSRVQVAHVAESIQL--PMP 331 (394)
T ss_dssp HHHHHH-TTCHHHHHHHHHHSTT--TTTTSHHHHHHHHHHHHH--HHH---HHHHHHHTTCSEEEHHHHHHHHTC--CHH
T ss_pred HHHHHH-hCCHHHHHHHHHHHHH--HHhcChHHHHHHHHHHHH--HHH---HHHHHHhHhhceeeHHHHHHHHCc--CHH
Confidence 666653 4677666666665543 333443321111100000 000 111111122234455555555433 567
Q ss_pred HHHHHHHHHHh
Q 011249 432 LGEIAARHLLE 442 (490)
Q Consensus 432 ~a~~~~~~~~~ 442 (490)
+++..+-+++.
T Consensus 332 evE~~L~~lI~ 342 (394)
T 3txn_A 332 QVEKKLSQMIL 342 (394)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777765
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.34 E-value=1.4 Score=46.77 Aligned_cols=94 Identities=10% Similarity=-0.114 Sum_probs=64.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHhcc-------------------------CCCChhhHHHHHHHHhhhCChHHHHHHHHHH
Q 011249 386 TCMVDLLGRSGQLEKAHSLIMDYK-------------------------DFCDAGTWGALLGACKVHVNAELGEIAARHL 440 (490)
Q Consensus 386 ~~l~~~~~~~g~~~~A~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (490)
..++.+|...|++++|.+.|++.. ......-|..++..+.+.|.++.+.++.+.+
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566666777777777765543 0111234667777888889999999998888
Q ss_pred HhcCC-CCC----chHHHHHHHHHhcCCcchHHHHHHHhhhccc
Q 011249 441 LELGP-EKT----GNSALLANIYASMGKWKDSEIVKMMISETEK 479 (490)
Q Consensus 441 ~~~~p-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 479 (490)
++..+ ++. ..|..+...+...|++++|...+-.+.....
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 87553 332 2577788888899999999888877665443
No 259
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.21 E-value=1.5 Score=43.67 Aligned_cols=51 Identities=10% Similarity=0.008 Sum_probs=35.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHhcCCCChHHHHHHHHHH
Q 011249 320 AFADHGKSQEALDMFLKMRNEGIEPN-QVTFIGVLTACSHGGLVEDGCKQFELM 372 (490)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 372 (490)
-+...|+++-|+++-++.+.. .|+ -.+|..|..+|...|+++.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 455667777777777777763 554 347777777777777777777777665
No 260
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.40 E-value=14 Score=34.44 Aligned_cols=199 Identities=8% Similarity=-0.009 Sum_probs=118.2
Q ss_pred cCChhHHHHHHhhcCC---------CCHHhHHHHHHHHHhcCChHHHHHHHHHHHH-cCcccChhhHHHHHHHH----hc
Q 011249 192 CGEVREAKKVFDEISE---------PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQ-ENVRISEVAMVGAISAC----TQ 257 (490)
Q Consensus 192 ~~~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~----~~ 257 (490)
.|++++|++.+-.+.+ ........++..|...|+++...+.+.-+.+ .|..+. ....+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhc
Confidence 3678888877755432 2455677888999999999998888877664 333222 223444333 22
Q ss_pred cCChHHHH--HHHHHHHh--cC-CCC---chhHHHHHHHHHHhcCChHHHHHHHhcccC----C-----ChhHHHHHHHH
Q 011249 258 LGDVEMAA--ILAKHVDE--GC-CDR---TNYVSNALIHMHSKCGYLDLAWREFSRIKN----K-----DVISYSSMITA 320 (490)
Q Consensus 258 ~g~~~~a~--~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~-----~~~~~~~l~~~ 320 (490)
....+... .+.+.+.. .| +-. .......|...|...|++.+|..++..+.. . -...+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 33333221 12211111 11 111 223446688999999999999999988753 1 13467777888
Q ss_pred HHhcCChHHHHHHHHHHHH----cCCCCcH--HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhh
Q 011249 321 FADHGKSQEALDMFLKMRN----EGIEPNQ--VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGR 394 (490)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~----~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (490)
|...+++.+|..++.++.. ....|+. ..+...+..+...+++.+|.+. |..+...+..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~----------------y~e~~~~~~~ 250 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY----------------LQEIYQTDAI 250 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH----------------HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH----------------HHHHHhcccc
Confidence 9999999999999998753 2222222 2344455555566666655433 3445566666
Q ss_pred cCChHHHHHHHHhc
Q 011249 395 SGQLEKAHSLIMDY 408 (490)
Q Consensus 395 ~g~~~~A~~~~~~~ 408 (490)
.++.......+..+
T Consensus 251 ~~d~~~~~~~L~~~ 264 (445)
T 4b4t_P 251 KSDEAKWKPVLSHI 264 (445)
T ss_dssp HSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 67665555544433
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.13 E-value=2.8 Score=29.20 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 011249 225 YAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIH 288 (490)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 288 (490)
+.-+..+-++.+....+.|++......+.+|.+.+++..|.++++-++... .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344556666666667777777777777788888888888887777775543 222445555543
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.49 E-value=2.3 Score=29.59 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 011249 326 KSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVD 390 (490)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 390 (490)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++++-++.+.+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3445666666666667888888888888888888888888888888887533 33455666553
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.29 E-value=0.52 Score=39.80 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=36.7
Q ss_pred HHhhcCChHHHHHHHHh-ccCCC-ChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCC
Q 011249 391 LLGRSGQLEKAHSLIMD-YKDFC-DAGTWGALLGACKVHVNAELGEIAARHLLELGPE 446 (490)
Q Consensus 391 ~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 446 (490)
.+.+.|++++|++.... ++..| |...-..++..++-.|++++|.+-++.+.+++|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 45567777777766643 33333 4455556666777777777777777777777776
No 264
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.14 E-value=4.1 Score=37.14 Aligned_cols=72 Identities=13% Similarity=0.103 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHH----HcCCCCCchHHH
Q 011249 314 YSSMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTR----VFGIKPLTEHLT 386 (490)
Q Consensus 314 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~ 386 (490)
...++..+...|+++++...++.+... -+.+...+..+|.++...|+..+|++.|+.+.+ +.|+.|++.+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344566677788888888888887764 233667888888888888888888888877654 358888776543
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.08 E-value=13 Score=32.49 Aligned_cols=167 Identities=9% Similarity=-0.056 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCCcHHHHHHHHHHhcC
Q 011249 283 SNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDM----FLKMRNEGIEPNQVTFIGVLTACSH 358 (490)
Q Consensus 283 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~p~~~~~~~l~~~~~~ 358 (490)
|.++..=|.+.+++++|++++.. -...+.+.|+...|-++ .+...+.+.+++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44556667788888888887654 22345566776665554 5555567888888888888877655
Q ss_pred CCChH-HHHHHHHHHHH---HcCC--CCCchHHHHHHHHHhhcCChHHHHHHHHhccCCCChhhHHHHHHHHhhh---CC
Q 011249 359 GGLVE-DGCKQFELMTR---VFGI--KPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKDFCDAGTWGALLGACKVH---VN 429 (490)
Q Consensus 359 ~g~~~-~a~~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 429 (490)
...-+ .=.++++++.+ +.|- .-++.....+...|.+.|++.+|...|-.-. ..++..+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCCC
Confidence 33211 12234444432 1122 2357778889999999999999998775221 22455555555544443 33
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHHHHHHhh
Q 011249 430 AELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEIVKMMIS 475 (490)
Q Consensus 430 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (490)
..++--++- ..+--|.-.|+...|..+++...
T Consensus 184 ~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred cchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHH
Confidence 332222111 12224456677788877777654
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=86.79 E-value=11 Score=30.44 Aligned_cols=166 Identities=16% Similarity=0.109 Sum_probs=78.8
Q ss_pred hHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCccc
Q 011249 164 MKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRI 243 (490)
Q Consensus 164 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 243 (490)
.+....+.+.+..+|...-...+..+.+.++.+....+.+.+..++...-...+.++...+..+ +...+..+.. .+
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~ 93 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DE 93 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CS
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CC
Confidence 3333444444445566666666666666666544444555555566665555566666655432 2333333332 23
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHh
Q 011249 244 SEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFAD 323 (490)
Q Consensus 244 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 323 (490)
+...-...+.++...|+.+.. ..+..+.+ .++..+-...+.++.+.+..+....+.+.+..++..+-...+.++.+
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE 169 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444555555555555554322 22222221 34444444555555555544333333333333455444455555555
Q ss_pred cCChHHHHHHHHHHH
Q 011249 324 HGKSQEALDMFLKMR 338 (490)
Q Consensus 324 ~~~~~~a~~~~~~~~ 338 (490)
.+. ..+...+..+.
T Consensus 170 ~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 170 IGG-ERVRAAMEKLA 183 (211)
T ss_dssp HCS-HHHHHHHHHHH
T ss_pred hCc-hhHHHHHHHHH
Confidence 444 33333344443
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.29 E-value=13 Score=31.37 Aligned_cols=118 Identities=17% Similarity=0.129 Sum_probs=71.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCch----HHHHHHHHHhh
Q 011249 320 AFADHGKSQEALDMFLKMRNEGIEP-NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTE----HLTCMVDLLGR 394 (490)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 394 (490)
...+.|++++++.....-++. .| |...=..++..+|-.|++++|.+-++...+. .|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---
Confidence 455678888888888887775 44 5555566777788889999998888888763 44432 33333322
Q ss_pred cCChHHHH-HHHHh--cc-CCCChhhH-HHHHHHH--hhhCChHHHHHHHHHHHhcCCCCCc
Q 011249 395 SGQLEKAH-SLIMD--YK-DFCDAGTW-GALLGAC--KVHVNAELGEIAARHLLELGPEKTG 449 (490)
Q Consensus 395 ~g~~~~A~-~~~~~--~~-~~~~~~~~-~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~~~ 449 (490)
+... ++|.. .+ ..-.+..| ..++.+. ...|+.++|.++-.++.+.-|..+.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1121 12221 11 11122223 3344443 4569999999999999888776554
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.96 E-value=7.6 Score=26.86 Aligned_cols=59 Identities=14% Similarity=0.073 Sum_probs=40.4
Q ss_pred HHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhH
Q 011249 187 AGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAM 248 (490)
Q Consensus 187 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 248 (490)
..+...|++++|..+.+...-||...|..|. -.+.|-.+++...+..+...| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3456778888888888877778877776664 446777777777777776665 4444443
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.25 E-value=8.3 Score=26.69 Aligned_cols=88 Identities=10% Similarity=-0.029 Sum_probs=62.7
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011249 259 GDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMR 338 (490)
Q Consensus 259 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 338 (490)
...++|..+-+.+...+. ...+-..-+..+.+.|++++|..+.+...-||...|-++.. .+.|-.+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356777777777766552 33332233456778999999999999999999999987754 57788888888887877
Q ss_pred HcCCCCcHHHHHH
Q 011249 339 NEGIEPNQVTFIG 351 (490)
Q Consensus 339 ~~~~~p~~~~~~~ 351 (490)
..| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 765 555555544
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.59 E-value=9 Score=26.57 Aligned_cols=88 Identities=13% Similarity=0.082 Sum_probs=61.7
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011249 259 GDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMR 338 (490)
Q Consensus 259 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 338 (490)
...++|..+-+.+...+. ...+-..-+..+.+.|++++|..+.+...-||...|-++.. .+.|-.+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356777777777766552 33332233456778899999999999999999999987754 46788888888777777
Q ss_pred HcCCCCcHHHHHH
Q 011249 339 NEGIEPNQVTFIG 351 (490)
Q Consensus 339 ~~~~~p~~~~~~~ 351 (490)
..| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 665 555555543
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.56 E-value=6.8 Score=28.97 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 011249 227 KAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIH 288 (490)
Q Consensus 227 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 288 (490)
-+..+-++.+....+.|++......+.+|.+.+|+..|.++++-++... .+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3455556666666677777777777777777777777777777765543 233445554443
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.30 E-value=5.1 Score=29.61 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 011249 326 KSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVD 390 (490)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 390 (490)
+.-+..+-++.+....+.|++......+++|.+.+++..|..+|+-++.+. .+....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 344556666666667788999999999999999999999999999888853 344556766653
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.18 E-value=7.5 Score=35.99 Aligned_cols=62 Identities=6% Similarity=-0.088 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 348 TFIGVLTACSHGGLVEDGCKQFELMTRVF-GIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 348 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
+...+...|.+.|+++.|.+.+.++.... +...-...+...++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34445555555566666666665555431 111113344445555555555555555555443
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.98 E-value=10 Score=30.46 Aligned_cols=47 Identities=2% Similarity=-0.245 Sum_probs=25.7
Q ss_pred hHHHHHHHHhcc----CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcC
Q 011249 398 LEKAHSLIMDYK----DFCDAGTWGALLGACKVHVNAELGEIAARHLLELG 444 (490)
Q Consensus 398 ~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (490)
..++.++|.-|. ...-...|......+...|++++|.++|+..++..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 445555554443 22334455555555666666666666666666543
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.61 E-value=9 Score=35.45 Aligned_cols=93 Identities=11% Similarity=0.035 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhhcCC------CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc---CcccChhhHH--
Q 011249 181 TWVAMIAGYGKCGEVREAKKVFDEISE------PDASCWAAMTVCYVQNGYAKAAIEMYKVMRQE---NVRISEVAMV-- 249 (490)
Q Consensus 181 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~-- 249 (490)
+...++..|.+.|++++|.+.|.++.. .-...+-..++.+...+++..+...+++.... +..|+.....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556677777777888888777777653 23456677777888888888888877776532 2222221110
Q ss_pred HHHHHHhccCChHHHHHHHHHHHh
Q 011249 250 GAISACTQLGDVEMAAILAKHVDE 273 (490)
Q Consensus 250 ~l~~~~~~~g~~~~a~~~~~~~~~ 273 (490)
.-...+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111123455677777666655543
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=75.63 E-value=19 Score=27.41 Aligned_cols=46 Identities=11% Similarity=0.004 Sum_probs=26.2
Q ss_pred HHHHHHHHHh--cCCCCCchHHHHHHHHHhcCCcchHHHHHHHhhhcc
Q 011249 433 GEIAARHLLE--LGPEKTGNSALLANIYASMGKWKDSEIVKMMISETE 478 (490)
Q Consensus 433 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 478 (490)
+.++|..+.. ++-..+.+|...+..+...|++.+|.++++.-.+.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 5555555554 334455566666666666666666666666544443
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.21 E-value=18 Score=25.12 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=56.0
Q ss_pred CChhHHHHHHHHHHhcCCCCCHhhHHHHHHHhcCCCChHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhC
Q 011249 82 AHFRQSILLYAKMHRLGVLTSGFTFSSVLNACARVPSLLEAVICGYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANC 161 (490)
Q Consensus 82 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 161 (490)
...++|..+-+.+...| + .....+|+. ..+.+.|++++|..+.+...-||...|..|-. .+.
T Consensus 21 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~------------sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rl 82 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG---E-EEAVQLIRL------------SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRL 82 (116)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHH------------HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHH------------HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--Hhc
Confidence 36788888888777654 3 334445553 23678899999999999998899888877654 456
Q ss_pred CChHHHHHHHHHhccCCch
Q 011249 162 GNMKAAKEFYDRMTEKNSV 180 (490)
Q Consensus 162 ~~~~~a~~~~~~~~~~~~~ 180 (490)
|-.+++..-+.++...+..
T Consensus 83 Gl~s~le~rL~~la~sg~p 101 (116)
T 2p58_C 83 GLGSALESRLNRLARSQDP 101 (116)
T ss_dssp TCHHHHHHHHHHHTTCCCH
T ss_pred ccHHHHHHHHHHHHhCCCH
Confidence 7777777777666554333
No 278
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=74.93 E-value=30 Score=27.51 Aligned_cols=142 Identities=13% Similarity=0.156 Sum_probs=85.1
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHhccCCchhHHHHHHHHHhcCChhHHHHHHhhc
Q 011249 126 GYTKIGLMDDAQRLFDSMAERNVISWSAMVAGYANCGNMKAAKEFYDRMTEKNSVTWVAMIAGYGKCGEVREAKKVFDEI 205 (490)
Q Consensus 126 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 205 (490)
.+.+.|..+....+.+.+..++...-...+.++...++.+....+.+.+..++...-...+.++.+.++.+....+.+.+
T Consensus 37 ~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 116 (201)
T 3ltj_A 37 ALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKAL 116 (201)
T ss_dssp HHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred HHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34455554444455555555676666666777777777655555555555667777777778888877765555555555
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHH
Q 011249 206 SEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVD 272 (490)
Q Consensus 206 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 272 (490)
..++...-...+.++.+.+.. ++...+..+.. .++...-...+.++...|+. .+...+..+.
T Consensus 117 ~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l 178 (201)
T 3ltj_A 117 KDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGGE-RVRAAMEKLA 178 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 567777666677777776654 34444444443 24555555666666666553 3444444444
No 279
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.51 E-value=20 Score=33.72 Aligned_cols=64 Identities=9% Similarity=0.126 Sum_probs=50.8
Q ss_pred CchhHhHHHHHHHHHhcCCCCHHHHHHHhccCCCCCCcee-------hHHHHHHHHhcCChhHHHHHHHHHHhc
Q 011249 31 HDQYHYYAQFLIRLLQLPGDNLSYARQVFDQIPKCKTQFL-------WTSLIRNHVLHAHFRQSILLYAKMHRL 97 (490)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~m~~~ 97 (490)
.... +++.+++.|...+. ++.|..+.++...|....+ +..+...+.-++++.+|.+.|....+.
T Consensus 229 ~qa~--l~nllLRnYL~~~~-y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 229 TKAM--LINLILRDFLNNGE-VDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHH--HHHHHHHHHHHSSC-STTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hhHH--HHHHHHHHHHccCc-HHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4567 89999999999999 9999999999987743122 223456677889999999999987765
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=70.06 E-value=24 Score=27.26 Aligned_cols=33 Identities=6% Similarity=-0.086 Sum_probs=21.3
Q ss_pred CChhhHHHHHHHHhhhCChHHHHHHHHHHHhcC
Q 011249 412 CDAGTWGALLGACKVHVNAELGEIAARHLLELG 444 (490)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (490)
.-...|......+...|++.+|.++|+..++..
T Consensus 94 ~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 94 SLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344566666666666677777777777766654
No 281
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=69.86 E-value=59 Score=31.88 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHH
Q 011249 121 EAVICGYTKIGLMDDAQRLFDSMAE---RNVISWSAMVAGYA 159 (490)
Q Consensus 121 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 159 (490)
-+++--+.|+|++++|.++.++... .-...+...+..|+
T Consensus 156 Wa~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 156 WALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC-
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHH
Confidence 5677778999999999999887753 11234455555555
No 282
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=67.44 E-value=12 Score=29.60 Aligned_cols=49 Identities=10% Similarity=0.015 Sum_probs=29.2
Q ss_pred HHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcchHHH
Q 011249 421 LGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWKDSEI 469 (490)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 469 (490)
+..|.+.|.+++|.+++++.....|.+...-.-|..+-.+.+.+...++
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lq 172 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQ 172 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHH
Confidence 3568888888888888888777766666666666655555544444443
No 283
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.68 E-value=51 Score=26.44 Aligned_cols=53 Identities=11% Similarity=0.018 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHcCccc-ChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCC
Q 011249 226 AKAAIEMYKVMRQENVRI-SEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDR 278 (490)
Q Consensus 226 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 278 (490)
...+.++|..|...|+-- -+..|......+...|++.+|..+|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555555444322 22334444444444555555555555544444333
No 284
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=62.57 E-value=70 Score=26.98 Aligned_cols=19 Identities=11% Similarity=0.057 Sum_probs=8.1
Q ss_pred CCCHhHHHHHHHHHHhCCC
Q 011249 145 ERNVISWSAMVAGYANCGN 163 (490)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~~ 163 (490)
.+|...-...+.++.+.|.
T Consensus 34 ~~~~~vr~~A~~~L~~~~~ 52 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGG 52 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHccCC
Confidence 3444443344444444443
No 285
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=62.12 E-value=71 Score=26.92 Aligned_cols=9 Identities=22% Similarity=0.586 Sum_probs=3.9
Q ss_pred HHHHhhcCC
Q 011249 389 VDLLGRSGQ 397 (490)
Q Consensus 389 ~~~~~~~g~ 397 (490)
+.++.+.|.
T Consensus 242 ~~aL~~i~~ 250 (280)
T 1oyz_A 242 IEAAGELGD 250 (280)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHhcCc
Confidence 344444444
No 286
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.78 E-value=32 Score=35.67 Aligned_cols=85 Identities=5% Similarity=-0.294 Sum_probs=47.5
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhccC---CC----------------
Q 011249 352 VLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYKD---FC---------------- 412 (490)
Q Consensus 352 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~---------------- 412 (490)
++..|...|..+-+.++. . ..+.++..-..++.+|...|++++|...|++... .+
T Consensus 816 l~~~L~~~~~~~~a~eL~----~--~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G--WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G--GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHH----h--hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 444555556655443322 2 2233333334566677777777777777766540 00
Q ss_pred ------ChhhHHHHHHHHhhhCChHHHHHHHHHHHh
Q 011249 413 ------DAGTWGALLGACKVHVNAELGEIAARHLLE 442 (490)
Q Consensus 413 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (490)
....|..++..+...+-++-+.++.+.+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 112455566666667777777777777765
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=53.89 E-value=87 Score=26.11 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=13.1
Q ss_pred HHHHHHhcCCCCHHHHHHHhccCC
Q 011249 40 FLIRLLQLPGDNLSYARQVFDQIP 63 (490)
Q Consensus 40 ~l~~~~~~~~~~~~~A~~~~~~~~ 63 (490)
..+..-++.|+ .+....+++.-.
T Consensus 7 ~~L~~A~~~g~-~~~v~~Ll~~g~ 29 (285)
T 1wdy_A 7 HLLIKAVQNED-VDLVQQLLEGGA 29 (285)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHTTC
T ss_pred hHHHHHHHcCC-HHHHHHHHHcCC
Confidence 34445556666 666666666543
No 288
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=53.07 E-value=1.2e+02 Score=26.90 Aligned_cols=73 Identities=11% Similarity=0.220 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhccCC---chhHHHHHHHHHhcCC--hhHHHHHHhhcCCCCHHhHHHHHHHHHh
Q 011249 150 SWSAMVAGYANCGNMKAAKEFYDRMTEKN---SVTWVAMIAGYGKCGE--VREAKKVFDEISEPDASCWAAMTVCYVQ 222 (490)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 222 (490)
..+.++.-|...|+.++|.+.++++..|. ..+...+..+.-+.++ .+...+++..+......+-..+..++.+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45778889999999999999999998773 2334444455544333 4557777777766555555566665543
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=51.64 E-value=80 Score=26.14 Aligned_cols=23 Identities=9% Similarity=-0.099 Sum_probs=16.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 011249 216 MTVCYVQNGYAKAAIEMYKVMRQ 238 (490)
Q Consensus 216 l~~~~~~~g~~~~A~~~~~~~~~ 238 (490)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45667777778888777776653
No 290
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.59 E-value=51 Score=31.05 Aligned_cols=59 Identities=8% Similarity=0.044 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC-------chHHHHHHHHHhhcCChHHHHHHHHhcc
Q 011249 347 VTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPL-------TEHLTCMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
..++.+++.|...+.++.|..+..+.. ++.. ...+..+++.+.-.+++.+|.+.+....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 467777888888888888888888773 2221 1112234566677788888887776544
No 291
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=48.80 E-value=1e+02 Score=24.64 Aligned_cols=63 Identities=5% Similarity=0.004 Sum_probs=40.0
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCCh-----HHHHHHHHHHHhcCC
Q 011249 213 WAAMTVCYVQ---NGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDV-----EMAAILAKHVDEGCC 276 (490)
Q Consensus 213 ~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-----~~a~~~~~~~~~~~~ 276 (490)
+..+|+++.+ -.+++.|+-++-+|.+.| .|....-..++-+....|.- ..|...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3445666654 578999999999999988 77666666666666665542 233344444444553
No 292
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.58 E-value=80 Score=23.97 Aligned_cols=65 Identities=11% Similarity=0.158 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcccCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCcHH
Q 011249 283 SNALIHMHSKCGYLDLAWREFSRIKNKD---VISYSSMITAFADHGK--SQEALDMFLKMRNEGIEPNQV 347 (490)
Q Consensus 283 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~ 347 (490)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3456777777778888887777776552 2233344444444322 345666777777666544433
No 293
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=47.19 E-value=20 Score=28.90 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCc-hHHH-----HHHHHHhhcCChHHHHHHHHhcc
Q 011249 362 VEDGCKQFELMTRVFGIKPLT-EHLT-----CMVDLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 362 ~~~a~~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~ 409 (490)
++.|+.+|+.+.+...++... .... ..+-.|.+.|.+++|.+++++.-
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 678999999988863222221 1111 23346777888888888887766
No 294
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=46.63 E-value=1.1e+02 Score=24.39 Aligned_cols=47 Identities=15% Similarity=0.047 Sum_probs=33.3
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccC
Q 011249 213 WAAMTVCYVQ---NGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLG 259 (490)
Q Consensus 213 ~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 259 (490)
+..+|+++.+ -.+++.|+-++-+|.+.|-.|....-..++-+....|
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3345666654 5789999999999999887776666666666655554
No 295
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.23 E-value=95 Score=23.57 Aligned_cols=50 Identities=6% Similarity=0.114 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCccc-ChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCC
Q 011249 229 AIEMYKVMRQENVRI-SEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDR 278 (490)
Q Consensus 229 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 278 (490)
+.++|..|...|+-- -+..|......+...|++.+|..+|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555444322 22334444444455555555555555554444333
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=45.68 E-value=86 Score=22.93 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=31.4
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCH---hHHHHHHHHHHhCCC--hHHHHHHHHHhccCCchhHHHHHHH
Q 011249 124 ICGYTKIGLMDDAQRLFDSMAERNV---ISWSAMVAGYANCGN--MKAAKEFYDRMTEKNSVTWVAMIAG 188 (490)
Q Consensus 124 ~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~l~~~ 188 (490)
+.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+......+-..+..+
T Consensus 14 l~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~G 83 (129)
T 2nsz_A 14 LKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 83 (129)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 3346666777777777777765521 223333334433321 2344455555544444444333333
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.92 E-value=92 Score=22.77 Aligned_cols=64 Identities=11% Similarity=0.180 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhcccCCCh---hHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCcHH
Q 011249 284 NALIHMHSKCGYLDLAWREFSRIKNKDV---ISYSSMITAFADHGK--SQEALDMFLKMRNEGIEPNQV 347 (490)
Q Consensus 284 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~ 347 (490)
..++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 4566777777888888888877765522 233344444444332 345667777777666544433
No 298
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.42 E-value=1.2e+02 Score=24.84 Aligned_cols=52 Identities=15% Similarity=0.279 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCCCc-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCC
Q 011249 328 QEALDMFLKMRNEGIEPN-QVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKP 380 (490)
Q Consensus 328 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 380 (490)
+....+|..|...|+--. ...|......+...|++.+|.++|+.-.+. +-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 355566666666654433 235555555566666666666666666664 4444
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=41.81 E-value=74 Score=24.15 Aligned_cols=66 Identities=15% Similarity=0.272 Sum_probs=32.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCC---HhHHHHHHHHHHhCCC--hHHHHHHHHHhccCCchhHHHHHHH
Q 011249 123 VICGYTKIGLMDDAQRLFDSMAERN---VISWSAMVAGYANCGN--MKAAKEFYDRMTEKNSVTWVAMIAG 188 (490)
Q Consensus 123 l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~l~~~ 188 (490)
++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+......+-..+..+
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~G 85 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 85 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 3444666677777777777776552 1233333334443222 2344455555544444444444333
No 300
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=41.28 E-value=1.1e+02 Score=24.79 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHcCCCCcHH--HHH-----HHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHH
Q 011249 327 SQEALDMFLKMRNEGIEPNQV--TFI-----GVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMV 389 (490)
Q Consensus 327 ~~~a~~~~~~~~~~~~~p~~~--~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 389 (490)
.+.|+.+|+.+.+.-.-|+.. ... ..+..|.+.|.+++|.+++++... -.++..-....+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~---~~~s~~kLr~kL 154 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS---KDPTTQKLRNDL 154 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST---TCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc---CCCCchHHHHHH
Confidence 788999999998863222221 222 234458899999999999999964 344444333333
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.87 E-value=1.1e+02 Score=25.25 Aligned_cols=90 Identities=12% Similarity=0.121 Sum_probs=53.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH--cCCCC----cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHH
Q 011249 316 SMITAFADHGKSQEALDMFLKMRN--EGIEP----NQVTFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMV 389 (490)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 389 (490)
--++.+....++++|..++++..+ .+.++ +.......+..-.....-.-+..+.+.+ . ..+++......+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~---~~~~~~~~r~~v 98 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-L---SSNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-H---TCSSHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H---hcCCHHHHHHHH
Confidence 357788899999999999998775 22332 1112222232222222222333333333 2 244555566777
Q ss_pred HHHhhcCChHHHHHHHHhcc
Q 011249 390 DLLGRSGQLEKAHSLIMDYK 409 (490)
Q Consensus 390 ~~~~~~g~~~~A~~~~~~~~ 409 (490)
..+.+.|+.++|.++|-+..
T Consensus 99 ~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHH
Confidence 88899999999999986654
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.83 E-value=2.7e+02 Score=28.78 Aligned_cols=128 Identities=8% Similarity=-0.051 Sum_probs=71.6
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCChHH
Q 011249 184 AMIAGYGKCGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGDVEM 263 (490)
Q Consensus 184 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 263 (490)
.++..+...|..+-|.++...+.. ++..-..+..+|...|++++|...|++.- .|+..+...... ...
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~ 882 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LRE 882 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHH
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhh
Confidence 356667777888877776666665 44444568888999999999999998754 233211100000 000
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcccC----CCh----hHHHHHHHHHHhcC
Q 011249 264 AAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREFSRIKN----KDV----ISYSSMITAFADHG 325 (490)
Q Consensus 264 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~~ 325 (490)
...++... +. .......|..++..+.+.+.++.+.++-+...+ .|. ..|..+..+.+..|
T Consensus 883 ~~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 883 FQEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 11111110 00 011234677788888888888877766554432 222 35666666655443
No 303
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=40.79 E-value=53 Score=22.62 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=19.0
Q ss_pred ChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChHHH
Q 011249 194 EVREAKKVFDEISEPDASCWAAMTVCYVQNGYAKAA 229 (490)
Q Consensus 194 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 229 (490)
..+.|.++++.+....+.+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 455555555555555555555555555544544433
No 304
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=40.71 E-value=1.4e+02 Score=24.02 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=42.7
Q ss_pred CHHhHHHHHHHHHh---cCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhccCC-----hHHHHHHHHHHHhcC
Q 011249 209 DASCWAAMTVCYVQ---NGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQLGD-----VEMAAILAKHVDEGC 275 (490)
Q Consensus 209 ~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~ 275 (490)
+...+..+|+++.+ -.+++.|+-++-+|.+.|-.|....-..++-+....|. ...|...++.....|
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 105 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVG 105 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC
Confidence 33445556777655 57899999999999999877777666666666665553 223344444444445
No 305
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.98 E-value=1.3e+02 Score=23.14 Aligned_cols=51 Identities=6% Similarity=0.097 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCccc-ChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCc
Q 011249 229 AIEMYKVMRQENVRI-SEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRT 279 (490)
Q Consensus 229 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 279 (490)
+.++|..|...|+-- -+..|......+...|++.+|..+|..-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 445666666555432 234455555555566666666666666665554443
No 306
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=38.41 E-value=28 Score=21.42 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=13.1
Q ss_pred cCCcchHHHHHHHhhhcccccCC
Q 011249 461 MGKWKDSEIVKMMISETEKKKSP 483 (490)
Q Consensus 461 ~g~~~~A~~~~~~~~~~~~~~~~ 483 (490)
.|+.+.|...+-.|...+..++.
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCCC
Confidence 45666666666666555544443
No 307
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=36.93 E-value=33 Score=23.66 Aligned_cols=39 Identities=10% Similarity=-0.069 Sum_probs=31.7
Q ss_pred CCCHHHHHHHhccCCCCCCceehHHHHHHHHhcCChhHHHH
Q 011249 49 GDNLSYARQVFDQIPKCKTQFLWTSLIRNHVLHAHFRQSIL 89 (490)
Q Consensus 49 ~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 89 (490)
.. .+.|+++++.++..++ ..|..++.++...|+..-|..
T Consensus 51 t~-~~~ar~Lld~L~~rG~-~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SR-RDQARQLIIDLETRGS-QALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CH-HHHHHHHHHHHTTSCT-THHHHHHHHHHTTTCHHHHHH
T ss_pred Ch-HHHHHHHHHHHHHcCh-HHHHHHHHHHHHcCcHHHHHH
Confidence 45 8899999999999888 999999999977676555543
No 308
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=36.14 E-value=1.3e+02 Score=24.53 Aligned_cols=46 Identities=2% Similarity=-0.157 Sum_probs=32.3
Q ss_pred HHHHHHHHhcc----CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcC
Q 011249 399 EKAHSLIMDYK----DFCDAGTWGALLGACKVHVNAELGEIAARHLLELG 444 (490)
Q Consensus 399 ~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (490)
+++.++|.-|. ...-...|......+...|++++|.++|+..++..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34555555544 23455677777778888888888888888888765
No 309
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=33.90 E-value=1.1e+02 Score=20.69 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=16.8
Q ss_pred CChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCC
Q 011249 193 GEVREAKKVFDEISEPDASCWAAMTVCYVQNGY 225 (490)
Q Consensus 193 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 225 (490)
...++|.++++.+.......|..++.++...+.
T Consensus 50 t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKDNDSYVSFYNALLHEGY 82 (94)
T ss_dssp SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCH
Confidence 344455555555555555555555555555443
No 310
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=33.25 E-value=1.1e+02 Score=28.82 Aligned_cols=73 Identities=10% Similarity=-0.054 Sum_probs=47.4
Q ss_pred HHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 011249 388 MVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYAS 460 (490)
Q Consensus 388 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 460 (490)
|.+...-...++.|..+|.+.. .+.+...|+.|+......|+.-.|.-.|-+.+......+.+..+|...+.+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 3333334455677777776655 444566777777777777777777777777776655557777777666554
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.75 E-value=1.1e+02 Score=22.90 Aligned_cols=62 Identities=10% Similarity=0.085 Sum_probs=38.0
Q ss_pred HHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCh
Q 011249 234 KVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYL 296 (490)
Q Consensus 234 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 296 (490)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345566766655433 34444445556667888888887776555665555566777766654
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.73 E-value=1.1e+02 Score=22.93 Aligned_cols=37 Identities=5% Similarity=-0.089 Sum_probs=17.9
Q ss_pred CChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCC
Q 011249 360 GLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQ 397 (490)
Q Consensus 360 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 397 (490)
+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 35 ~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 35 MAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp SSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCC
Confidence 3344555666665553 333444444444455555443
No 313
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=30.08 E-value=55 Score=27.15 Aligned_cols=31 Identities=6% Similarity=-0.187 Sum_probs=23.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHh
Q 011249 74 LIRNHVLHAHFRQSILLYAKMHRLGVLTSGF 104 (490)
Q Consensus 74 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 104 (490)
.+...++.|+.+....+++.+.+.|..++..
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~ 38 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE 38 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchh
Confidence 3455668899999999998888777666533
No 314
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=30.05 E-value=2e+02 Score=22.47 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=41.7
Q ss_pred hcCChHHHHHHHhcccCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---------------C-cH-HHHHHHHH
Q 011249 292 KCGYLDLAWREFSRIKNKDVISYSSMITAFADHGKSQEALDMFLKMRNEGIE---------------P-NQ-VTFIGVLT 354 (490)
Q Consensus 292 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------p-~~-~~~~~l~~ 354 (490)
-.|.+..++-++.....-...-|..+ +|-+.+++..|...++.+.+..+. | |. ..++.+..
T Consensus 45 yngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 45 LNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp HTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred hcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Confidence 34556555555544433222223222 345566666666666666643322 1 12 24455555
Q ss_pred HhcCCCChHHHHHHHHHHH
Q 011249 355 ACSHGGLVEDGCKQFELMT 373 (490)
Q Consensus 355 ~~~~~g~~~~a~~~~~~~~ 373 (490)
.|...|+.++|+..+..--
T Consensus 123 lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 123 LCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHhhhHhhhhc
Confidence 6667777777777665543
No 315
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.58 E-value=1.9e+02 Score=25.45 Aligned_cols=144 Identities=8% Similarity=-0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhccC---CchhHHHHHHHHHh-cCChhHHHHHHhhcCCCCHHhHHHHHHHHHhcCChH
Q 011249 152 SAMVAGYANCGNMKAAKEFYDRMTEK---NSVTWVAMIAGYGK-CGEVREAKKVFDEISEPDASCWAAMTVCYVQNGYAK 227 (490)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 227 (490)
..++.-|...|+.++|.+.++++..| ...+...+..+.-+ ....+.+.+++..+.+....+-..+..+ +.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~G------f~ 88 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQG------LY 88 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHH------HH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH------HH
Q ss_pred HHHHHHHHHHHcCcccChhhHHHHHHHHhccCCh----HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 011249 228 AAIEMYKVMRQENVRISEVAMVGAISACTQLGDV----EMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYLDLAWREF 303 (490)
Q Consensus 228 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 303 (490)
+..+.+..+.-. .|....+..-+-+.+-.... +-...+.+.+.+.| ........++..+.+....+.+.++|
T Consensus 89 ~~~~~l~Dl~lD--iP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g--~~~~fl~~vl~~l~~~~g~~~l~~~~ 164 (339)
T 1ug3_A 89 EILELAEDMEID--IPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLG--KAASLLLEILGLLCKSMGPKKVGTLW 164 (339)
T ss_dssp HHHHHHHHHTTT--CTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHT--CHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHhhChHhhcC--ccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHcCHHHHHHHH
Q ss_pred hc
Q 011249 304 SR 305 (490)
Q Consensus 304 ~~ 305 (490)
.+
T Consensus 165 ~~ 166 (339)
T 1ug3_A 165 RE 166 (339)
T ss_dssp HH
T ss_pred HH
No 316
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.27 E-value=1.6e+02 Score=22.12 Aligned_cols=62 Identities=6% Similarity=0.086 Sum_probs=35.9
Q ss_pred HHHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCh
Q 011249 234 KVMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYL 296 (490)
Q Consensus 234 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 296 (490)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3455666665443 2344445555556677788888887766555655555566677766654
No 317
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=28.95 E-value=1.7e+02 Score=22.64 Aligned_cols=9 Identities=0% Similarity=0.268 Sum_probs=3.9
Q ss_pred HHHHHHHhc
Q 011249 52 LSYARQVFD 60 (490)
Q Consensus 52 ~~~A~~~~~ 60 (490)
.+....+++
T Consensus 18 ~~~v~~ll~ 26 (201)
T 3hra_A 18 TKKVKEILQ 26 (201)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 444444443
No 318
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.83 E-value=1.5e+02 Score=22.18 Aligned_cols=37 Identities=5% Similarity=0.004 Sum_probs=17.9
Q ss_pred CChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCC
Q 011249 360 GLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQ 397 (490)
Q Consensus 360 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 397 (490)
+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 40 ~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 40 GTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp SSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCc
Confidence 3344555566555553 333444444444455555443
No 319
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.73 E-value=1.1e+02 Score=24.35 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=26.3
Q ss_pred hhHHHHHHhhcCC-CCHH-------hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011249 195 VREAKKVFDEISE-PDAS-------CWAAMTVCYVQNGYAKAAIEMYKVMRQE 239 (490)
Q Consensus 195 ~~~A~~~~~~~~~-~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (490)
++.|+.+|+.+.+ .+.. .--..+..|.+.|.+++|.++|++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 3456666666654 1110 1122345688888888888888886543
No 320
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.67 E-value=1.2e+02 Score=23.14 Aligned_cols=40 Identities=8% Similarity=-0.001 Sum_probs=16.8
Q ss_pred CCCChHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHhhcCC
Q 011249 358 HGGLVEDGCKQFELMTRVF-GIKPLTEHLTCMVDLLGRSGQ 397 (490)
Q Consensus 358 ~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 397 (490)
..+..-.|.++++.+.+.. +...+..|...-+..+...|-
T Consensus 44 ~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 44 HSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp SCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred hCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3344445555555554420 122233333333444444443
No 321
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=26.33 E-value=2.2e+02 Score=21.82 Aligned_cols=57 Identities=12% Similarity=-0.035 Sum_probs=0.0
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCC--CHhhHHHHHH-HhcCCCChHHHHHHHHHhcCCHHHHHHHHhh
Q 011249 77 NHVLHAHFRQSILLYAKMHRLGVLT--SGFTFSSVLN-ACARVPSLLEAVICGYTKIGLMDDAQRLFDS 142 (490)
Q Consensus 77 ~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (490)
.+...|++-+|-++++..=.....| ....|..+|+ . ++.-...+.|+...|..++.+
T Consensus 41 ~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~l---------AvAl~H~~rgN~~GA~~ll~~ 100 (161)
T 2ijq_A 41 RLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVA---------AGAYKHFDFEDDDGMRSLFRT 100 (161)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHH---------HHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH---------HHHHHHHHhCCHHHHHHHHHH
No 322
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=26.14 E-value=1.3e+02 Score=29.56 Aligned_cols=64 Identities=13% Similarity=0.023 Sum_probs=46.9
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcc
Q 011249 399 EKAHSLIMDYKDFCDAGTWGALLGACKVHVNAELGEIAARHLLELGPEKTGNSALLANIYASMGKWK 465 (490)
Q Consensus 399 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 465 (490)
+.|.++.+.|. ...............|++.-|.++.+.++..+|+|..+...++.+|.+.|...
T Consensus 437 ~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 437 DSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 34455555544 22223334455668899999999999999999999999999999998887443
No 323
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=26.04 E-value=2.9e+02 Score=25.96 Aligned_cols=77 Identities=6% Similarity=-0.072 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChHHHHHHHHhcc--CCCChhhHHHHHHHHh
Q 011249 348 TFIGVLTACSHGGLVEDGCKQFELMTRVFGIKPLTEHLTCMVDLLGRSGQLEKAHSLIMDYK--DFCDAGTWGALLGACK 425 (490)
Q Consensus 348 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 425 (490)
++..|.+.......++.|...|.++.. -.|.+...|+.|+-.....|+.-+|.-.|-+.. ..|-+.+..++...+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~--~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHH--hCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 444455555556778999999999988 466678889999988888898888887765443 5677778888877665
Q ss_pred h
Q 011249 426 V 426 (490)
Q Consensus 426 ~ 426 (490)
+
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 4
No 324
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.60 E-value=1.3e+02 Score=22.99 Aligned_cols=69 Identities=7% Similarity=0.047 Sum_probs=45.5
Q ss_pred HHHHHHHHH-HHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhc--CCCCchhHHHHHHHHHHhcCCh
Q 011249 227 KAAIEMYKV-MRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEG--CCDRTNYVSNALIHMHSKCGYL 296 (490)
Q Consensus 227 ~~A~~~~~~-~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 296 (490)
+.+++-+.+ +.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|..--++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444544444 44677776554 445566677777788889999988877 6556665555566777777754
No 325
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=25.42 E-value=2.2e+02 Score=21.50 Aligned_cols=21 Identities=0% Similarity=0.295 Sum_probs=10.9
Q ss_pred HHHHHhcCChhHHHHHHhhcC
Q 011249 186 IAGYGKCGEVREAKKVFDEIS 206 (490)
Q Consensus 186 ~~~~~~~~~~~~A~~~~~~~~ 206 (490)
+..+++.|+.+.+...+..+.
T Consensus 100 lE~~~~~~~~~~~~~~l~~l~ 120 (153)
T 3us6_A 100 FRNFCEEQNIDACRRCLQQVK 120 (153)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555555555443
No 326
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.34 E-value=1.3e+02 Score=18.47 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHhcCCCCCHhhHHHHHHHh
Q 011249 84 FRQSILLYAKMHRLGVLTSGFTFSSVLNAC 113 (490)
Q Consensus 84 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 113 (490)
.++|...|-+|.+..-.++..||...+..+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 367888888887655455667888888875
No 327
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=24.19 E-value=3.2e+02 Score=22.93 Aligned_cols=62 Identities=10% Similarity=-0.024 Sum_probs=42.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCcccChhhHHHHHHHHhc-cCChHHHHHHHHHHH
Q 011249 211 SCWAAMTVCYVQNGYAKAAIEMYKVMRQENVRISEVAMVGAISACTQ-LGDVEMAAILAKHVD 272 (490)
Q Consensus 211 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~ 272 (490)
.....++...-+.+++++..+..+++.+.+...+..-.+.|-.+|-. .|....+++++..+.
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissie 94 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHH
Confidence 34445667777888999988888888877777777666666666533 344555666666554
No 328
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=23.96 E-value=3e+02 Score=22.58 Aligned_cols=47 Identities=11% Similarity=-0.002 Sum_probs=21.9
Q ss_pred cCChHHHHHHHHHHHhcCCCCchh--HHHHHHHHHHhcCChHHHHHHHh
Q 011249 258 LGDVEMAAILAKHVDEGCCDRTNY--VSNALIHMHSKCGYLDLAWREFS 304 (490)
Q Consensus 258 ~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~ 304 (490)
.++......+.+.+.+.|..++.. .-.+.+...+..|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 344333344555555555443321 11123344455667666666665
No 329
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.51 E-value=2.2e+02 Score=21.27 Aligned_cols=62 Identities=8% Similarity=0.060 Sum_probs=40.6
Q ss_pred HHHHHcCcccChhhHHHHHHHHhccC-ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCh
Q 011249 234 KVMRQENVRISEVAMVGAISACTQLG-DVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYL 296 (490)
Q Consensus 234 ~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 296 (490)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 346667777665433 4455555555 6777899999998877666666555566666666643
No 330
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.12 E-value=1.6e+02 Score=19.04 Aligned_cols=60 Identities=7% Similarity=0.041 Sum_probs=36.8
Q ss_pred HHHHcCcccChhhHHHHHHHHhccC-ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 011249 235 VMRQENVRISEVAMVGAISACTQLG-DVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGY 295 (490)
Q Consensus 235 ~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 295 (490)
.+.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..+..-.+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4556676666544 34555555554 556677788888776655566555556666666554
No 331
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=21.66 E-value=4.3e+02 Score=23.47 Aligned_cols=65 Identities=11% Similarity=0.158 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcccCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCcHH
Q 011249 283 SNALIHMHSKCGYLDLAWREFSRIKNKD---VISYSSMITAFADHGK--SQEALDMFLKMRNEGIEPNQV 347 (490)
Q Consensus 283 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~ 347 (490)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+...+++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 3556666777777777777777776553 2233333334433322 334556666666655444333
No 332
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.64 E-value=1.3e+02 Score=21.91 Aligned_cols=35 Identities=11% Similarity=0.022 Sum_probs=14.6
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 011249 260 DVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCG 294 (490)
Q Consensus 260 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 294 (490)
..-.|.++++.+.+.+...+..|..-.++.+...|
T Consensus 25 ~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 25 DFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444444444433333333333344444444
No 333
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=21.60 E-value=85 Score=21.33 Aligned_cols=24 Identities=8% Similarity=-0.208 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhCChHHHHHHHHHH
Q 011249 417 WGALLGACKVHVNAELGEIAARHL 440 (490)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~ 440 (490)
+......+.+.|.+++|++..+++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 344455566666666666666554
No 334
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.26 E-value=1.5e+02 Score=21.64 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=26.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCC
Q 011249 316 SMITAFADHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGL 361 (490)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 361 (490)
.++..+...+.+-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3444455555566677777777666555555555555555555543
No 335
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=21.10 E-value=5e+02 Score=24.10 Aligned_cols=31 Identities=6% Similarity=-0.150 Sum_probs=13.7
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 011249 275 CCDRTNYVSNALIHMHSKCGYLDLAWREFSR 305 (490)
Q Consensus 275 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 305 (490)
|++--...|..-.+.+...|++++|-++--.
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~ 386 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAAN 386 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3333333343334444455555555444433
No 336
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.57 E-value=1.8e+02 Score=21.70 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=34.5
Q ss_pred HHHHcCcccChhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCh
Q 011249 235 VMRQENVRISEVAMVGAISACTQLGDVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGYL 296 (490)
Q Consensus 235 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 296 (490)
.+.+.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 4455666655542 23334444444 556777777777766555655555556666666643
No 337
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.48 E-value=2.6e+02 Score=20.44 Aligned_cols=60 Identities=10% Similarity=0.038 Sum_probs=37.6
Q ss_pred HHHHcCcccChhhHHHHHHHHhccC-ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 011249 235 VMRQENVRISEVAMVGAISACTQLG-DVEMAAILAKHVDEGCCDRTNYVSNALIHMHSKCGY 295 (490)
Q Consensus 235 ~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 295 (490)
.+.+.|.+++..-. .++..+...+ ..-.|.++++.+.+.+...+..+..--++.+...|-
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 35567777665433 4455555555 677788888888887656666555555566666554
No 338
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.46 E-value=3.3e+02 Score=21.75 Aligned_cols=62 Identities=15% Similarity=0.218 Sum_probs=40.8
Q ss_pred HHHHHH---hcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHHcCCCC
Q 011249 317 MITAFA---DHGKSQEALDMFLKMRNEGIEPNQVTFIGVLTACSHGGLV-----EDGCKQFELMTRVFGIKP 380 (490)
Q Consensus 317 l~~~~~---~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-----~~a~~~~~~~~~~~~~~~ 380 (490)
+|+++. +-.+.+.|+-.+-+|++.| .|....=..++.+....|.- ..|...++..... |.+-
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i-G~PE 86 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKL-GLPE 86 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHH-CTTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-CCCH
Confidence 444443 4578999999999999999 77666666666666666642 3455555555553 6543
Done!