BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011252
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 286 bits (733), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 180/467 (38%), Positives = 247/467 (52%), Gaps = 38/467 (8%)
Query: 20 VGHDYGDALSKSILFFEGQRSGYLPQDQRLAWRGNSGLSDGWTYNTDLVGGYYDAGDNVK 79
+ +DY L S+LF+E QRSG LP DQ++ WR +S L+D DL GGY+DAGD VK
Sbjct: 1 MAYDYKQVLRDSLLFYEAQRSGRLPADQKVTWRKDSALNDQGDQGQDLTGGYFDAGDFVK 60
Query: 80 FNFPMSFTTTLLSWSIIEF-GDSMPPHELRNALVAVRWATDYLLKTVSQPNRIFVQVGDP 138
F FPM++T T+L+W +I+F L + AV+WATDY +K + N + QVG
Sbjct: 61 FGFPMAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHTSQNEFYGQVGQG 120
Query: 139 NFDHNCWERPEDMDTERTVYAVDAPNAASDVXXXXXXXXXXXXXXFRSSDSGYAETLLRN 198
+ DH W RPEDM R Y +D SD+ FR+ D Y+ LL +
Sbjct: 121 DADHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTH 180
Query: 199 AVKAFQFADSYRGAYSDNPNIRDGACPFYCDFDGYQDELLWGAAWLRRASQDDTYLNYIE 258
A + F FA++YRG YSD +I D A FY D Y+DEL+W AAWL RA+ D+TYLN E
Sbjct: 181 ARQLFDFANNYRGKYSD--SITD-ARNFYASAD-YRDELVWAAAWLYRATNDNTYLNTAE 236
Query: 259 MNGKTLGADENINEFGWDNKHAGINVLVSKEVLEANKYTLQSYKASADSFMCTLVPESSS 318
G WD+K +G+ VL++K NK Q+YK + S++ L+
Sbjct: 237 SLYDEFGLQNWGGGLNWDSKVSGVQVLLAKLT---NK---QAYKDTVQSYVNYLINNQQK 290
Query: 319 SHIDYSPGGLIYKPGGSNLQHATTISFLLLVYANYLAKTSQSVNCGNLYVTPASLRLQAK 378
+P GL+Y L+HA +F++L L ++ +S R A+
Sbjct: 291 -----TPKGLLYIDMWGTLRHAANAAFIML-------------EAAELGLSASSYRQFAQ 332
Query: 379 KQVDYILGSNPLGLSYMVGYSNNFPQRIHHRGSSLPSIKDHPQFIACKEGSIYFNSTNPN 438
Q+DY LG G S++ G+ +N P R HHR SS P P C + FNS +PN
Sbjct: 333 TQIDYALGDG--GRSFVCGFGSNPPTRPHHRSSSCP-----PAPATCDWNT--FNSPDPN 383
Query: 439 PNVLVGAVVGGPGKDDAYNDDRVDFRKSEPTTYINAPFVGVLAYFAA 485
+VL GA+VGGP ++D Y DDR D+ +E T NA F LA A
Sbjct: 384 YHVLSGALVGGPDQNDNYVDDRSDYVHNEVATDYNAGFQSALAALVA 430
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 275 bits (702), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 177/474 (37%), Positives = 244/474 (51%), Gaps = 55/474 (11%)
Query: 23 DYGDALSKSILFFEGQRSGYLPQDQRLAWRGNSGLSDGWTYNTDLVGGYYDAGDNVKFNF 82
+Y +AL KS+ F+E QRSG LP++ R++WRG+SGL+DG DL GG+YDAGD+VKF F
Sbjct: 5 NYAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHVKFGF 64
Query: 83 PMSFTTTLLSWSIIEFGDSMPPHELRNALVA-----VRWATDYLLKTVSQPNRIFVQVGD 137
PM+FT T+L+W IE P +R+ + +RW DY +K PN ++VQVGD
Sbjct: 65 PMAFTATMLAWGAIE----SPEGYIRSGQMPYLKDNLRWVNDYFIKAHPSPNVLYVQVGD 120
Query: 138 PNFDHNCWERPEDMDTERTVYAVDAPNAASDVXXXXXXXXXXXXXXFRSSDSGYAETLLR 197
+ DH W E M ER + VD SDV F D YA TL++
Sbjct: 121 GDADHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQ 180
Query: 198 NAVKAFQFADSYRGAYSDNPNIRDGACPFYCDFDGYQDELLWGAAWLRRASQDDTYLNYI 257
+A + + FAD+YRG YSD + GA FY + GYQDEL+WGA WL +A+ DD+YL
Sbjct: 181 HAKQLYTFADTYRGVYSD--CVPAGA--FYNSWSGYQDELVWGAYWLYKATGDDSYLAKA 236
Query: 258 EMNGKTLGADENIN------EFGWDNKHAGINVLVSKEVLEANKYTLQSYKASADSFMCT 311
E L ++ + WD+K G VL++KE + Q Y A+ ++
Sbjct: 237 EYEYDFLSTEQQTDLRSYRWTIAWDDKSYGTYVLLAKETGK------QKYIDDANRWLDY 290
Query: 312 LVPESSSSHIDYSPGGLIYKPGGSNLQHATTISFLLLVYANYLAKTSQSVNCGNLYVTPA 371
+ + YSPGG+ L++A +F+ LVYA + + +
Sbjct: 291 WTVGVNGQRVPYSPGGMAVLDTWGALRYAANTAFVALVYAKVIDDPVRKQRYHDF----- 345
Query: 372 SLRLQAKKQVDYILGSNPLGLSYMVGYSNNFPQRIHHR---GSSLPSIKDHPQFIACKEG 428
A +Q++Y LG NP SY+VG+ NN P+ HHR GS SI
Sbjct: 346 -----AVRQINYALGDNPRNSSYVVGFGNNPPRNPHHRTAHGSWTDSIA----------- 389
Query: 429 SIYFNSTNPNPNVLVGAVVGGPGK-DDAYNDDRVDFRKSEPTTYINAPFVGVLA 481
S N +VL GA+VGGPG +DAY DDR D+ +E T NA F LA
Sbjct: 390 -----SPAENRHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYNAGFSSALA 438
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 165/469 (35%), Positives = 230/469 (49%), Gaps = 47/469 (10%)
Query: 22 HDYGDALSKSILFFEGQRSGYLPQDQRLAWRGNSGLSDGWTYNTDLVGGYYDAGDNVKFN 81
++YG+AL KSI+F+E QRSG LP D+R WR +SG+ DG DL GG+YDAGD+VKFN
Sbjct: 4 YNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFN 63
Query: 82 FPMSFTTTLLSWSIIEFGDSMPPH-ELRNALVAVRWATDYLLKTVSQPNRIFVQVGDPNF 140
PMS+T+ +L+WS+ E D+ + + + ++WA DY +K P + QVGD
Sbjct: 64 LPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDGGK 123
Query: 141 DHNCWERPEDMDTERTVYAVDAPNAASDVXXXXXXXXXXXXXXFRSSDSGYAETLLRNAV 200
DH+ W E M ER + VDA S V F+SSD YAE + +A
Sbjct: 124 DHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAK 183
Query: 201 KAFQFADSYRGAYSDNPNIRDGACPFYCDFDGYQDELLWGAAWLRRASQDDTYLN----Y 256
F AD A SD A Y + D+L W A WL A+ D TYL+ Y
Sbjct: 184 NLFDMADK---AKSDAGYT---AASGYYSSSSFYDDLSWAAVWLYLATNDSTYLDKAESY 237
Query: 257 IEMNGKTLGADENINEFG--WDNKHAGINVLVSKEVLEANKYTLQSYKASADSFMCTLVP 314
+ GK D ++G WD+ H G +L++K NK Q YK S + +
Sbjct: 238 VPNWGKEQQTDIIAYKWGQXWDDVHYGAELLLAKLT---NK---QLYKDSIEMNLDFWTT 291
Query: 315 ESSSSHIDYSPGGLIYKPGGSNLQHATTISFLLLVYANYLAKTSQSVNCGNLYVTPASLR 374
+ + + Y+P GL + +L+HATT +FL VYA + T V+ ++
Sbjct: 292 GVNGTRVSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEGCTPSKVSVYKDFL------ 345
Query: 375 LQAKKQVDYILGSNPLGLSYMVGYSNNFPQRIHHRGSSLPSIKDHPQFIACKEGSIYFNS 434
K Q+DY LGS G S++VGY N PQ HHR GS
Sbjct: 346 ---KSQIDYALGST--GRSFVVGYGVNPPQHPHHR---------------TAHGSWTDQM 385
Query: 435 TNP--NPNVLVGAVVGGPGKDDAYNDDRVDFRKSEPTTYINAPFVGVLA 481
T+P + + + GA+VGGP D Y D+ ++ +E NA F G LA
Sbjct: 386 TSPTYHRHTIYGALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALA 434
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 165/469 (35%), Positives = 230/469 (49%), Gaps = 47/469 (10%)
Query: 22 HDYGDALSKSILFFEGQRSGYLPQDQRLAWRGNSGLSDGWTYNTDLVGGYYDAGDNVKFN 81
++YG+AL KSI+F+E QRSG LP D+R WR +SG+ DG DL GG+YDAGD+VKFN
Sbjct: 4 YNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFN 63
Query: 82 FPMSFTTTLLSWSIIEFGDSMPPH-ELRNALVAVRWATDYLLKTVSQPNRIFVQVGDPNF 140
PMS+T+ +L+WS+ E D+ + + + ++WA DY +K P + QVGD
Sbjct: 64 LPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDGGK 123
Query: 141 DHNCWERPEDMDTERTVYAVDAPNAASDVXXXXXXXXXXXXXXFRSSDSGYAETLLRNAV 200
DH+ W E M ER + VDA S V F+SSD YAE + +A
Sbjct: 124 DHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAK 183
Query: 201 KAFQFADSYRGAYSDNPNIRDGACPFYCDFDGYQDELLWGAAWLRRASQDDTYLN----Y 256
F AD A SD A Y + D+L W A WL A+ D TYL+ Y
Sbjct: 184 NLFDMADK---AKSDAGYT---AASGYYSSSSFYDDLSWAAVWLYLATNDSTYLDKAESY 237
Query: 257 IEMNGKTLGADENINEFG--WDNKHAGINVLVSKEVLEANKYTLQSYKASADSFMCTLVP 314
+ GK D ++G WD+ H G +L++K NK Q YK S + +
Sbjct: 238 VPNWGKEQQTDIIAYKWGQCWDDVHYGAELLLAKLT---NK---QLYKDSIEMNLDFWTT 291
Query: 315 ESSSSHIDYSPGGLIYKPGGSNLQHATTISFLLLVYANYLAKTSQSVNCGNLYVTPASLR 374
+ + + Y+P GL + +L+HATT +FL VYA + T V+ ++
Sbjct: 292 GVNGTRVSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEGCTPSKVSVYKDFL------ 345
Query: 375 LQAKKQVDYILGSNPLGLSYMVGYSNNFPQRIHHRGSSLPSIKDHPQFIACKEGSIYFNS 434
K Q+DY LGS G S++VGY N PQ HHR GS
Sbjct: 346 ---KSQIDYALGST--GRSFVVGYGVNPPQHPHHR---------------TAHGSWTDQM 385
Query: 435 TNP--NPNVLVGAVVGGPGKDDAYNDDRVDFRKSEPTTYINAPFVGVLA 481
T+P + + + GA+VGGP D Y D+ ++ +E NA F G LA
Sbjct: 386 TSPTYHRHTIYGALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALA 434
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 225 bits (573), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 159/476 (33%), Positives = 236/476 (49%), Gaps = 50/476 (10%)
Query: 18 AVVGHDYGDALSKSILFFEGQRSGYLPQDQ-RLAWRGNSGLSDGWTYNTDLVGGYYDAGD 76
A +YG+AL K+I F+E QRSG L RL WRG+SGL DG DL GG+YDAGD
Sbjct: 20 ATGAFNYGEALQKAIFFYECQRSGKLDSSTLRLNWRGDSGLDDGKDAGIDLTGGWYDAGD 79
Query: 77 NVKFNFPMSFTTTLLSWSIIEFGDSMPPHELRNALV-AVRWATDYLLKTVSQPNRIFVQV 135
+VKFN PMS++ +L W++ E+ D+ N ++ ++WA DY +K + + + QV
Sbjct: 80 HVKFNLPMSYSAAMLGWAVYEYEDAFKQSGQYNHILNNIKWACDYFIKCHPEKDVYYYQV 139
Query: 136 GDPNFDHNCWERPEDMDTERTVYAVDAPNAASDVXXXXXXXXXXXXXXFRSSDSGYAETL 195
GD + DH W E M ER Y VD + S V F+ D Y++
Sbjct: 140 GDGHADHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIFKKVDGEYSKEC 199
Query: 196 LRNAVKAFQFADSYRGAYSDNPNIRDGACPFYCDFDGYQDELLWGAAWLRRASQDDTYLN 255
L++A + F+FAD+ + SD+ A FY + G+ DEL W A WL A+ D +YL+
Sbjct: 200 LKHAKELFEFADTTK---SDDGYT--AANGFYNSWSGFYDELSWAAVWLYLATNDSSYLD 254
Query: 256 YIEMNGKTLGAD--ENINEFG----WDNKHAGINVLVSKEVLEANKYTLQSYKASADSFM 309
E G + NI ++ WD+ G +L+++ + K YK + + +
Sbjct: 255 KAESYSDKWGYEPQTNIPKYKWAQCWDDVTYGTYLLLARIKNDNGK-----YKEAIERHL 309
Query: 310 CTLVPESSSSHIDYSPGGLIYKPGGSNLQHATTISFLLLVYANYLAKTSQSVNCGNLYVT 369
+ I Y+P GL + +L++ATT +FL VY+++ +
Sbjct: 310 DWWTTGYNGERITYTPKGLAWLDQWGSLRYATTTAFLACVYSDWENGDKEK--------- 360
Query: 370 PASLRLQ-AKKQVDYILGSNPLGLSYMVGYSNNFPQRIHHR---GSSLPSIKDHPQFIAC 425
A L+ A+ Q DY LGS G S++VG+ N P+R HHR GS S + P+
Sbjct: 361 -AKTYLEFARSQADYALGST--GRSFVVGFGENPPKRPHHRTAHGSWADSQMEPPE---- 413
Query: 426 KEGSIYFNSTNPNPNVLVGAVVGGPGKDDAYNDDRVDFRKSEPTTYINAPFVGVLA 481
+ +VL GA+VGGP D Y DD ++ +E NA FVG+LA
Sbjct: 414 ------------HRHVLYGALVGGPDSTDNYTDDISNYTCNEVACDYNAGFVGLLA 457
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 156/478 (32%), Positives = 233/478 (48%), Gaps = 46/478 (9%)
Query: 23 DYGDALSKSILFFEGQRSGYLPQDQRLAWRGNSGLSDGWTYNTDLVGGYYDAGDNVKFNF 82
+YG+AL K+I+F+E Q SG LP R WRG+S L DG DL GG++DAGD+VKFN
Sbjct: 27 NYGEALQKAIMFYEFQMSGKLPNWVRNNWRGDSALKDGQDNGLDLTGGWFDAGDHVKFNL 86
Query: 83 PMSFTTTLLSWSIIEFGDS-MPPHELRNALVAVRWATDYLLKTVSQPNRIFVQVGDPNFD 141
PMS+T T+LSW++ E+ D+ + +L + L + W DY +K + QVGD + D
Sbjct: 87 PMSYTGTMLSWAVYEYKDAFVKSGQLEHILNQIEWVNDYFVKCHPSKYVYYYQVGDGSKD 146
Query: 142 HNCWERPEDMDTERTVYAVDAPNAASDVXXXXXXXXXXXXXXFRSSDSGYAETLLRNAVK 201
H W E M ER + V + S V + + A T L++A +
Sbjct: 147 HAWWGPAEVMQMERPSFKVTQSSPGSTVVAETAASLAAASIVLKDRNPTKAATYLQHAKE 206
Query: 202 AFQFADSYRGAYSDNPNIRDGACPFYCDFDGYQDELLWGAAWLRRASQDDTYL----NYI 257
++FA+ + SD A +Y + G+ DEL W A WL A+ D TYL +Y+
Sbjct: 207 LYEFAEVTK---SDAGYT--AANGYYNSWSGFYDELSWAAVWLYLATNDSTYLTKAESYV 261
Query: 258 EMNGKTLGADENINEFG--WDNKHAGINVLVSKEVLEANKYTLQSYKASADSFMCTLVPE 315
+ K G++ ++ WD+ H G +L++K + YK +S +
Sbjct: 262 QNWPKISGSNTIDYKWAHCWDDVHNGAALLLAKITGK------DIYKQIIESHLDYWTTG 315
Query: 316 SSSSHIDYSPGGLIYKPGGSNLQHATTISFLLLVYANYLAKTSQSVNCGNLYVTPASLRL 375
+ I Y+P GL + +L++ATT +FL VY++++ S R
Sbjct: 316 YNGERIKYTPKGLAWLDQWGSLRYATTTAFLAFVYSDWVGCPSTKKEI---------YRK 366
Query: 376 QAKKQVDYILGSNPLGLSYMVGYSNNFPQRIHHRGSSLPSIKDHPQFIACKEGSIYFNST 435
+ Q+DY LGS G S++VG+ N P+R HHR + H + + Y T
Sbjct: 367 FGESQIDYALGS--AGRSFVVGFGTNPPKRPHHRTA-------HSSWADSQSIPSYHRHT 417
Query: 436 NPNPNVLVGAVVGGPGKDDAYNDDRVDFRKSEPTTYINAPFVGVLA----YFAANPNP 489
L GA+VGGPG DD+Y DD ++ +E NA FVG LA + NP P
Sbjct: 418 ------LYGALVGGPGSDDSYTDDISNYVNNEVACDYNAGFVGALAKMYQLYGGNPIP 469
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 185 bits (469), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 142/478 (29%), Positives = 215/478 (44%), Gaps = 75/478 (15%)
Query: 22 HDYGDALSKSILFFEGQRSGYLPQ---DQRLAWRGNSGLSDGWTYNTDLVGGYYDAGDNV 78
HDY AL SI+FF+ + G PQ + WRG +DG DL GGY+DAGD+V
Sbjct: 4 HDYSTALKDSIIFFDANKCG--PQAGENNVFDWRGACHTTDGSDVGVDLTGGYHDAGDHV 61
Query: 79 KFNFPMSFTTTLLSWSIIEFGDSM-PPHELRNALVAVRWATDYLLKTVSQPNRIFVQVGD 137
KF P ++ +L WS+ EF +S L +++ TDY LK+ + QVG+
Sbjct: 62 KFGLPQGYSAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLKSHPNSTTFYYQVGE 121
Query: 138 PNFDHNCWERPEDMDTER-TVYAVDAPNAASDVXXXXXXXXXXXXXXFRSSDSGYAETLL 196
N DH W PE+ +R ++Y D + ASD+ +++ DS YA L
Sbjct: 122 GNADHTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKCL 181
Query: 197 RNAVKAFQFADSYRGAYSDNPNIRDGACPFYCDFDGYQDELLWGAAWLRRASQDDTYLNY 256
A + + + +G G + + D+L W A WL A+ D TY+
Sbjct: 182 NAAKELYAMGKANQGV---------GNGQSFYQATSFGDDLAWAATWLYTATNDSTYITD 232
Query: 257 IEMNGKTLGADENINEFG------WDNKHA----GINVLVSKEVL-EANKYTLQSYKASA 305
E TLG N N+ WD+ + + + K++ +A ++ +K
Sbjct: 233 AEQF-ITLGNTMNENKMQDKWTMCWDDMYVPAALRLAQITGKQIYKDAIEFNFNYWK--- 288
Query: 306 DSFMCTLVPESSSSHIDYSPGGLIYKPGGSNLQHATTISFLLLVYANYLAKTSQSVNCGN 365
+ + +PGGL + L++A S ++LVY Q+ +
Sbjct: 289 -------------TQVTTTPGGLKWLSNWGVLRYAAAESMVMLVYC------KQNPD--- 326
Query: 366 LYVTPASLRLQAKKQVDYILGSNPLGLSYMVGYSNNFPQRIHHRGSSLPSIKDHPQFIAC 425
SL AKKQVDYILG NP +SY++GY +N+ HHR ++
Sbjct: 327 -----QSLLDLAKKQVDYILGDNPANMSYIIGYGSNWCIHPHHRAAN------------- 368
Query: 426 KEGSIYFNSTNPNP--NVLVGAVVGGPGKDDAYNDDRVDFRKSEPTTYINAPFVGVLA 481
G Y N N P ++L GA+VGGP ++D + DD ++ +E NA VGVLA
Sbjct: 369 --GYTYANGDNAKPAKHLLTGALVGGPDQNDKFLDDANQYQYTEVALDYNAGLVGVLA 424
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 218/521 (41%), Gaps = 87/521 (16%)
Query: 11 LSTLLIAAVVGHDYGDALSKSILFFEGQRSGY-LPQDQRLAWRG--------------NS 55
+T+ +A ++Y AL S+ F++ G + ++ L+WRG N+
Sbjct: 27 FNTVSTSAAGEYNYAKALQYSMFFYDANMCGTGVDENSLLSWRGDCHVYDARLPLDSQNT 86
Query: 56 GLSDGWTYN------------TDLVGGYYDAGDNVKFNFPMSFTTTLLSWSIIEFGDSM- 102
+SDG+ + D+ GG++DAGD+VKF P ++ + + W EF D
Sbjct: 87 NMSDGFISSNRSVLDPDGDGKVDVSGGFHDAGDHVKFGLPEAYAASTVGWGYYEFKDQFR 146
Query: 103 PPHELRNALVAVRWATDYLLKTVSQPNRIFV-----QVGDPNFDHNCWERPEDMDTERTV 157
+ +A V +R+ DY ++ + V QVGD + DH W PE+ R
Sbjct: 147 ATGQAVHAEVILRYFNDYFMRCTFRDASGNVVAFCHQVGDGDIDHAFWGAPENDTMFRRG 206
Query: 158 YAVDAPNAASDVXXXXXXXXXXXXXXFRSSDSGYAETLLRNAVKAFQFADSYRGAYSDNP 217
+ + +D+ F+ +D YA L A F FA+ NP
Sbjct: 207 WFITKEKPGTDIISATAASLAINYMNFKDTDPQYAAKSLDYAKALFDFAEK-------NP 259
Query: 218 ----NIRDGACPFYCDFDGYQDELLWGAAWLRRASQDDTYLNYIEMNGKTLGADENINEF 273
DG +Y +QD+ W AAWL A+Q++ YL+ I+
Sbjct: 260 KGVVQGEDGPKGYYGS-SKWQDDYCWAAAWLYLATQNEHYLDEAFKYYDYYAPPGWIH-- 316
Query: 274 GWDNKHAG-------INVLVSKEVLE-ANKYTLQSYKASADSF-----MCTLVPESSSSH 320
W++ +G IN L K+ ++Y S K + + L+ + S
Sbjct: 317 CWNDVWSGTACILAEINDLYDKDSQNFEDRYKRASNKNQWEQIDFWKPIQDLLDKWSGGG 376
Query: 321 IDYSPGGLIYKPGGSNLQHATTISFLLLVYANYLAKTSQSVNCGNLYVTPASLRLQAKKQ 380
I +PGG ++ + ++ T + LVY + TP+ A+ Q
Sbjct: 377 ITVTPGGYVFLNQWGSARYNTAAQLIALVYDKHHGD------------TPSKYANWARSQ 424
Query: 381 VDYILGSNPLGLSYMVGYSNNFPQRIHHRGSSLPSIKDHPQFIACKEGSIYFNSTNPNPN 440
+DY+LG NPL Y+VGYS+N + HHR +S +KD N ++P+
Sbjct: 425 MDYLLGKNPLNRCYVVGYSSNSVKYPHHRAAS--GLKDA-------------NDSSPHKY 469
Query: 441 VLVGAVVGGPGKDDAYNDDRVDFRKSEPTTYINAPFVGVLA 481
VL GA+VGGP D + D D+ +E NA FVG A
Sbjct: 470 VLYGALVGGPDASDQHVDRTNDYIYNEVAIDYNAAFVGACA 510
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 123/498 (24%), Positives = 186/498 (37%), Gaps = 76/498 (15%)
Query: 15 LIAAVVGHD--YGDALSKSILFFEGQRSGY-LPQDQRLAW-RGNSGLSDGWTYNTDLV-- 68
L A VV H Y D L + FF+ Q G LP+D+ W G SD + T+
Sbjct: 77 LEARVVIHRRAYRDVLEAMLRFFDYQLCGVVLPEDEAGPWAHGACHTSDAKVFGTERALA 136
Query: 69 --GGYYDAGDNVKFNFPMSFTTTLLSWSIIEFGDSMP-----------PHELRNALVAVR 115
GG++DAGD K+ P + L + F ++ PH L AL R
Sbjct: 137 CPGGWHDAGDYGKYTVPAAKAVADLLLAHEYFPAALAHVRPMRSVHRAPH-LPPALEVAR 195
Query: 116 WATDYLLKTVSQPNR--IFVQVGDPNFDHNCWERPEDMDTERTVYAVDAPNAASDVXXXX 173
+LL T+ P ++ +V P+F RPED D + + A+
Sbjct: 196 EEIAWLL-TMQDPATGGVYHKVTTPSFP-PLDTRPEDDDAPLVLSPISYAATAT-----F 248
Query: 174 XXXXXXXXXXFRSSDSGYAETLLRNAVKAFQFADSYRGAYSDNPN-IRDGACPFYCDFDG 232
+R D + A +A+ + ++ NP+ I G Y D +
Sbjct: 249 CAAMAHAALVYRPFDPALSSCCADAARRAYAWLGAHEMQPFHNPDGILTGE---YGDAE- 304
Query: 233 YQDELLWGAAWLRRASQDDTYLNYIEMNGKTLGADENINEFGW-DNKHAGI-------NV 284
+DELLW + L R + D + E L D E GW D G+
Sbjct: 305 LRDELLWASCALLRMTGDSAWARVCE---PLLDLDLPW-ELGWADVALYGVMDYLRTPRA 360
Query: 285 LVSKEVLEANKYTLQSYKASADSFMCTLVPESSSSHIDYSPGGLIYKPGGSNLQHAT-TI 343
VS +V K L D+ + ES I I+ GSN+ +
Sbjct: 361 AVSDDVRNKVKSRLLR---ELDALAA--MAESHPFGIPMRDDDFIW---GSNMVLLNRAM 412
Query: 344 SFLLLVYANYLAKTSQSVNCGNLYVTPASLRLQAKKQVDYILGSNPLGLSYMVGYSNNFP 403
+FLL L + +V A++ DY+ G+NPLG Y+ G+
Sbjct: 413 AFLLAEGVGVLHPAAHTV---------------AQRAADYLFGANPLGQCYVTGFGQRPV 457
Query: 404 QRIHHRGSSLPSIKDHPQFIACKEGSIYFNSTNPNPNVLVGAVVGGPGKDDAYNDDRVDF 463
+ HHR S + DHP G + + + A + G +AY D + +
Sbjct: 458 RHPHHRPSVADDV-DHP-----VPGMVVGGPNRHLQDEIARAQLAGRPAMEAYIDHQDSY 511
Query: 464 RKSEPTTYINAPFVGVLA 481
+E Y N+P V V+A
Sbjct: 512 STNEVAVYWNSPAVFVIA 529
>pdb|1CLC|A Chain A, Three-Dimensional Structure Of Endoglucanase D At 1.9
Angstroms Resolution
Length = 639
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 103/444 (23%), Positives = 165/444 (37%), Gaps = 77/444 (17%)
Query: 66 DLVGGYYDAGDNVKF--NFPMSFTTTLLSWSIIEFGDSMPPHELR---------NALVAV 114
D G++DAGD K+ N ++ + L+W F D + P L + L +
Sbjct: 181 DSTKGWHDAGDYNKYVVNAGITVGSMFLAWE--HFKDQLEPVALEIPEKNNSIPDFLDEL 238
Query: 115 RWATDYLLKTVSQPN---RIFVQVGDPNFDHNCWERPEDMDTERTVYAVDAPNAASDVXX 171
++ D++L T+ P+ R+ +V NF + PE+ ER + V +AA+
Sbjct: 239 KYEIDWIL-TMQYPDGSGRVAHKVSTRNF--GGFIMPENEHDER--FFVPWSSAAT---A 290
Query: 172 XXXXXXXXXXXXFRSSDSGYAETLLRNAVKAFQF-ADSYRGAYSDNPNIRDGACPFYCDF 230
FR D YAE + A +++F ++ +++ G D
Sbjct: 291 DFVAMTAMAARIFRPYDPQYAEKCINAAKVSYEFLKNNPANVFANQSGFSTGEYATVSD- 349
Query: 231 DGYQDELLWGAAWLRRASQDDTYLNYIEMNG----KTLGADENINEFGWDN-KHAGINVL 285
D+ LW AA + D+ YL E K + AD F WDN + G+
Sbjct: 350 ---ADDRLWAAAEMWETLGDEEYLRDFENRAAQFSKKIEAD-----FDWDNVANLGMFTY 401
Query: 286 VSKEVLEANKYTLQSYKASADSFMCTLVPESSSSHIDYSPGGLIYKPGGSNLQHATTISF 345
+ E N +QS K S S ++V S + + G Y + T
Sbjct: 402 LLSERPGKNPALVQSIKDSLLSTADSIVRTSQNHGYGRTLGTTYYWGCNGTVVRQT---- 457
Query: 346 LLLVYANYLAKTSQSVNCGNLYVTPASLRLQAKKQVDYILGSNPLGLSYMVGYSNNFPQR 405
++L AN ++ + VN A + ++ G N SY+ G N P
Sbjct: 458 MILQVANKISPNNDYVNA-------------ALDAISHVFGRNYYNRSYVTGLGINPPMN 504
Query: 406 IHHRGSSLPSIKDHPQFIACKEGSIYFNSTNPNPNVLVGAVVGGPGKDDAYNDDRVDFRK 465
H R S I + P P LVG G PG D + D + ++
Sbjct: 505 PHDRRSGADGIWE------------------PWPGYLVGG--GWPGPKD-WVDIQDSYQT 543
Query: 466 SEPTTYINAPFVGVLAYFAANPNP 489
+E NA + LA F +P
Sbjct: 544 NEIAINWNAALIYALAGFVNYNSP 567
>pdb|1UT9|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 609
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 381 VDYILGSNPLGLSYMVGYSNNFPQRIHHRGSSLPSIKDHPQFIACKEGSIYFNSTNPNPN 440
+ Y+LG N + SY+ GY Q H R + + K +F A G I S PN
Sbjct: 504 ISYLLGRNAMDQSYVTGYGERPLQNPHDRFWTPQTSK---RFPAPPPGII---SGGPNSR 557
Query: 441 VLVGAVVGGPGKD----DAYNDDRVDFRKSEPTTYINAPFVGVLAYF 483
+ KD + D + +E T NAPF V AY
Sbjct: 558 FEDPTINAAVKKDTPPQKCFIDHTDSWSTNEITVNWNAPFAWVTAYL 604
>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|B Chain B, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|C Chain C, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|D Chain D, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|E Chain E, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|F Chain F, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|G Chain G, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|H Chain H, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
Length = 676
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 49/141 (34%), Gaps = 14/141 (9%)
Query: 315 ESSSSHIDYSPGGLIYKPGGSNLQHATTISFLLLVYANYLAKTSQSVNCGNLYVTPASLR 374
E+ H D P ++ +PG L H ++ Y + Q C T L
Sbjct: 139 ENRIIHRDLKPENIVLQPGPQRLIHK-------IIDLGYAKELDQGELCTEFVGTLQYLA 191
Query: 375 LQAKKQVDYILGSN-----PLGLSYMVGYSNNFP--QRIHHRGSSLPSIKDHPQFIACKE 427
+ +Q Y + + L + G+ P Q + G +H
Sbjct: 192 PELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLT 251
Query: 428 GSIYFNSTNPNPNVLVGAVVG 448
G++ F+S P PN L G + G
Sbjct: 252 GAVKFSSVLPTPNHLSGILAG 272
>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta
(I4122)
Length = 677
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 49/141 (34%), Gaps = 14/141 (9%)
Query: 315 ESSSSHIDYSPGGLIYKPGGSNLQHATTISFLLLVYANYLAKTSQSVNCGNLYVTPASLR 374
E+ H D P ++ +PG L H ++ Y + Q C T L
Sbjct: 140 ENRIIHRDLKPENIVLQPGPQRLIHK-------IIDLGYAKELDQGELCTEFVGTLQYLA 192
Query: 375 LQAKKQVDYILGSN-----PLGLSYMVGYSNNFP--QRIHHRGSSLPSIKDHPQFIACKE 427
+ +Q Y + + L + G+ P Q + G +H
Sbjct: 193 PELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLT 252
Query: 428 GSIYFNSTNPNPNVLVGAVVG 448
G++ F+S P PN L G + G
Sbjct: 253 GAVKFSSVLPTPNHLSGILAG 273
>pdb|1RQ5|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 610
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 381 VDYILGSNPLGLSYMVGYSNNFPQRIHHRGSSLPSIKDHPQFIACKEGSIYFNSTNPNPN 440
+ Y+LG N + SY+ GY Q H R + + K +F A G I S PN
Sbjct: 504 ISYLLGRNAMDQSYVTGYGERPLQNPHDRFWTPQTSK---RFPAPPPGII---SGGPNSR 557
Query: 441 VLVGAVVGGPGKDDAYNDDRVDFRKSEPTTYI----NAPFVGVLAYF 483
+ KD +D S T I NAPF V AY
Sbjct: 558 FEDPTINAAVKKDTPPQKCFIDHTDSWGTNQITVNWNAPFAWVTAYL 604
>pdb|3EJ8|A Chain A, Structure Of Double Mutant Of Human Inos Oxygenase Domain
With Bound Immidazole
pdb|3EJ8|B Chain B, Structure Of Double Mutant Of Human Inos Oxygenase Domain
With Bound Immidazole
pdb|3EJ8|C Chain C, Structure Of Double Mutant Of Human Inos Oxygenase Domain
With Bound Immidazole
pdb|3EJ8|D Chain D, Structure Of Double Mutant Of Human Inos Oxygenase Domain
With Bound Immidazole
Length = 424
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 20/117 (17%)
Query: 214 SDNPNIRDGACPFYCDFDGYQDELLWGAAWLRRASQDDTYLNYIEMNGKTLGADENIN-- 271
++N NIR F DG D +W A +R Y Y +G G N+
Sbjct: 154 TNNGNIRSAITVFPQRSDGKHDFRVWNAQLIR-------YAGYQMPDGSIRGDPANVEIT 206
Query: 272 ----EFGWDNKHAGINVLVSKEVLEANKYTLQSYKASADSFMCTLVPESSSSHIDYS 324
+ GW K+ +VL VL+AN + ++ D LV E + H Y
Sbjct: 207 QLCIDLGWKPKYGRFDVL--PLVLQANGRDPELFEIPPD-----LVLEVAMEHPKYE 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,082,384
Number of Sequences: 62578
Number of extensions: 721299
Number of successful extensions: 1639
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1573
Number of HSP's gapped (non-prelim): 35
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)