Query 011253
Match_columns 490
No_of_seqs 280 out of 674
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 04:19:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkd_A Zinc finger protein ZPR 100.0 5E-138 2E-142 1076.8 43.0 395 29-471 10-404 (404)
2 2qkd_A Zinc finger protein ZPR 100.0 9.9E-65 3.4E-69 527.1 17.7 194 283-479 10-203 (404)
3 1qyp_A RNA polymerase II; tran 91.0 0.32 1.1E-05 36.7 5.0 42 30-72 14-55 (57)
4 1qyp_A RNA polymerase II; tran 88.8 0.47 1.6E-05 35.8 4.3 41 285-326 15-55 (57)
5 4ayb_P DNA-directed RNA polyme 84.7 0.26 9E-06 36.5 0.8 29 33-70 5-33 (48)
6 1k81_A EIF-2-beta, probable tr 82.4 0.57 1.9E-05 32.6 1.8 31 286-324 1-31 (36)
7 3h0g_I DNA-directed RNA polyme 80.4 1.4 4.7E-05 37.9 3.9 43 29-72 70-112 (113)
8 3ga8_A HTH-type transcriptiona 79.1 1.7 5.7E-05 34.7 3.7 38 286-324 3-46 (78)
9 3j20_Y 30S ribosomal protein S 78.9 1.2 4.2E-05 33.1 2.7 33 280-323 14-46 (50)
10 3a43_A HYPD, hydrogenase nicke 78.3 0.14 4.9E-06 45.7 -3.1 50 30-79 69-126 (139)
11 1vq8_Z 50S ribosomal protein L 77.8 1.2 4.1E-05 36.6 2.6 38 282-334 24-61 (83)
12 1vq8_Z 50S ribosomal protein L 75.7 1.2 4E-05 36.7 1.9 37 30-81 26-62 (83)
13 3o9x_A Uncharacterized HTH-typ 74.4 2.3 7.9E-05 36.3 3.6 39 286-324 3-46 (133)
14 2k4x_A 30S ribosomal protein S 74.2 1.8 6E-05 32.9 2.4 33 280-323 13-45 (55)
15 1nlt_A Protein YDJ1, mitochond 74.0 4 0.00014 39.5 5.5 35 286-323 55-89 (248)
16 3j20_Y 30S ribosomal protein S 73.5 2.3 7.9E-05 31.6 2.9 33 27-70 15-47 (50)
17 3ga8_A HTH-type transcriptiona 73.2 3.2 0.00011 33.0 3.9 39 32-72 3-48 (78)
18 3a43_A HYPD, hydrogenase nicke 72.8 0.21 7.2E-06 44.6 -3.5 48 285-332 70-125 (139)
19 1nlt_A Protein YDJ1, mitochond 71.2 11 0.00036 36.4 7.9 36 32-70 55-90 (248)
20 2k4x_A 30S ribosomal protein S 67.9 2.9 9.8E-05 31.7 2.4 32 27-69 14-45 (55)
21 1tfi_A Transcriptional elongat 65.6 7.3 0.00025 28.8 4.2 40 284-324 8-47 (50)
22 3o9x_A Uncharacterized HTH-typ 64.8 5.3 0.00018 34.0 3.8 39 32-70 3-46 (133)
23 1tfi_A Transcriptional elongat 63.4 7.4 0.00025 28.8 3.8 39 30-70 8-47 (50)
24 1twf_I B12.6, DNA-directed RNA 61.7 5.9 0.0002 34.4 3.5 44 30-74 71-114 (122)
25 1twf_L ABC10-alpha, DNA-direct 60.5 1.9 6.6E-05 34.3 0.2 30 283-324 26-55 (70)
26 3v2d_5 50S ribosomal protein L 59.8 1.3 4.5E-05 34.3 -0.9 23 31-69 30-52 (60)
27 2g2k_A EIF-5, eukaryotic trans 59.6 6.5 0.00022 36.4 3.5 34 286-325 97-130 (170)
28 2e9h_A EIF-5, eukaryotic trans 59.3 4.6 0.00016 36.9 2.5 33 286-324 104-136 (157)
29 2zjr_Z 50S ribosomal protein L 58.3 1.7 6E-05 33.5 -0.4 22 32-69 31-52 (60)
30 3h0g_I DNA-directed RNA polyme 57.6 5.9 0.0002 33.9 2.8 43 284-327 71-113 (113)
31 3h0g_L DNA-directed RNA polyme 56.1 1.5 5.2E-05 34.3 -1.1 31 28-70 18-48 (63)
32 3qt1_I DNA-directed RNA polyme 48.6 3.9 0.00013 36.3 0.1 42 29-72 90-132 (133)
33 2kdx_A HYPA, hydrogenase/ureas 48.0 3.5 0.00012 35.4 -0.3 37 30-79 72-109 (119)
34 2kdx_A HYPA, hydrogenase/ureas 46.8 4.2 0.00014 34.9 0.1 36 284-332 72-108 (119)
35 3cc2_Z 50S ribosomal protein L 45.9 8.2 0.00028 33.6 1.8 37 30-81 59-95 (116)
36 3j21_g 50S ribosomal protein L 45.9 1.2 4.2E-05 33.4 -3.0 27 284-325 13-39 (51)
37 2ctt_A DNAJ homolog subfamily 45.5 19 0.00064 29.8 3.9 32 286-324 46-77 (104)
38 3cw2_K Translation initiation 43.8 2.5 8.4E-05 38.0 -1.9 31 286-324 104-134 (139)
39 1nee_A EIF-2-beta, probable tr 43.0 6.9 0.00024 35.0 0.9 31 286-324 103-133 (138)
40 1u9d_A Hypothetical protein VC 41.5 61 0.0021 28.2 6.7 55 158-218 31-86 (122)
41 1u9d_A Hypothetical protein VC 41.0 53 0.0018 28.6 6.2 54 412-472 31-85 (122)
42 2d74_B Translation initiation 40.9 6.9 0.00024 35.4 0.5 32 286-325 105-136 (148)
43 2jrp_A Putative cytoplasmic pr 40.4 26 0.00089 28.6 3.8 10 333-342 61-70 (81)
44 1nui_A DNA primase/helicase; z 40.3 15 0.00052 34.9 2.9 33 281-323 10-42 (255)
45 1twf_I B12.6, DNA-directed RNA 39.7 21 0.0007 30.9 3.4 43 284-327 71-113 (122)
46 3j21_i 50S ribosomal protein L 39.2 19 0.00065 29.6 2.9 36 31-81 35-70 (83)
47 1ffk_W Ribosomal protein L37AE 38.8 17 0.00057 29.2 2.4 39 281-334 23-61 (73)
48 3izc_m 60S ribosomal protein R 38.7 20 0.00068 30.0 3.0 37 30-81 35-71 (92)
49 1ffk_W Ribosomal protein L37AE 38.4 23 0.00078 28.4 3.2 37 30-81 26-62 (73)
50 3iz5_m 60S ribosomal protein L 38.3 20 0.00068 30.0 2.9 36 31-81 36-71 (92)
51 1pqv_S STP-alpha, transcriptio 36.5 24 0.00083 35.2 3.8 40 30-71 267-307 (309)
52 2ctt_A DNAJ homolog subfamily 36.2 37 0.0013 28.0 4.4 33 32-71 46-78 (104)
53 1nui_A DNA primase/helicase; z 34.2 23 0.00078 33.7 3.1 32 28-69 11-42 (255)
54 2g2k_A EIF-5, eukaryotic trans 33.8 19 0.00065 33.3 2.3 34 32-71 97-130 (170)
55 2e2z_A TIM15; protein import, 33.6 15 0.00051 31.2 1.4 24 56-79 9-32 (100)
56 2k5c_A Uncharacterized protein 33.1 15 0.00051 30.3 1.3 39 31-69 8-60 (95)
57 3cng_A Nudix hydrolase; struct 33.1 10 0.00035 34.0 0.4 32 32-70 4-35 (189)
58 2e9h_A EIF-5, eukaryotic trans 33.1 23 0.00078 32.3 2.7 33 32-70 104-136 (157)
59 2jrp_A Putative cytoplasmic pr 31.1 34 0.0012 27.9 3.1 8 33-40 33-40 (81)
60 4a17_Y RPL37A, 60S ribosomal p 30.8 20 0.00068 30.6 1.7 36 31-81 36-71 (103)
61 1x3z_A Peptide: N-glycanase; h 30.3 47 0.0016 33.8 4.7 37 32-68 120-163 (335)
62 2m0e_A Zinc finger and BTB dom 29.6 17 0.00059 20.8 0.9 11 61-71 3-13 (29)
63 4e2x_A TCAB9; kijanose, tetron 29.4 32 0.0011 34.5 3.3 38 32-70 13-63 (416)
64 1exk_A DNAJ protein; extended 29.4 53 0.0018 25.4 4.0 33 285-324 28-60 (79)
65 2kvh_A Zinc finger and BTB dom 29.0 18 0.00061 20.9 0.9 12 60-71 3-14 (27)
66 1zso_A Hypothetical protein; s 28.5 24 0.00082 32.3 2.0 48 279-326 31-82 (164)
67 3qt1_I DNA-directed RNA polyme 28.2 12 0.00042 33.1 0.0 41 285-326 92-132 (133)
68 3agx_A DNAJ homolog subfamily 28.1 2.7E+02 0.0093 25.1 9.2 89 29-133 25-140 (181)
69 4e2x_A TCAB9; kijanose, tetron 28.0 32 0.0011 34.5 3.0 40 286-326 13-65 (416)
70 1pft_A TFIIB, PFTFIIBN; N-term 27.7 13 0.00045 26.8 0.1 27 287-324 7-34 (50)
71 1rik_A E6APC1 peptide; E6-bind 27.6 19 0.00067 20.8 0.9 11 61-71 3-13 (29)
72 3cc2_Z 50S ribosomal protein L 27.5 14 0.00047 32.2 0.2 38 282-334 57-94 (116)
73 2d74_B Translation initiation 27.5 9.9 0.00034 34.4 -0.7 32 32-71 105-136 (148)
74 1pqv_S STP-alpha, transcriptio 27.4 40 0.0014 33.6 3.6 38 285-324 268-306 (309)
75 2jne_A Hypothetical protein YF 27.2 40 0.0014 28.6 2.9 48 30-77 31-78 (101)
76 2lvu_A Zinc finger and BTB dom 33.0 13 0.00046 21.3 0.0 13 60-72 2-14 (26)
77 2e2z_A TIM15; protein import, 26.6 13 0.00046 31.5 -0.1 30 308-338 7-36 (100)
78 3po3_S Transcription elongatio 26.5 15 0.00052 33.9 0.3 40 30-71 136-176 (178)
79 1ard_A Yeast transcription fac 26.2 23 0.00077 20.4 1.0 12 61-72 3-14 (29)
80 1paa_A Yeast transcription fac 25.9 22 0.00074 20.8 0.9 11 61-71 3-13 (30)
81 2jne_A Hypothetical protein YF 25.6 53 0.0018 27.8 3.4 48 284-331 31-78 (101)
82 2kvf_A Zinc finger and BTB dom 25.4 23 0.00079 20.4 0.9 11 61-71 4-14 (28)
83 1znf_A 31ST zinc finger from X 25.4 23 0.00079 20.1 0.9 11 61-71 2-12 (27)
84 2m0d_A Zinc finger and BTB dom 24.9 25 0.00085 20.3 1.0 12 60-71 3-14 (30)
85 1p7a_A BF3, BKLF, kruppel-like 24.5 25 0.00086 21.9 1.0 11 61-71 12-22 (37)
86 1klr_A Zinc finger Y-chromosom 23.9 24 0.00082 20.3 0.8 12 61-72 3-14 (30)
87 1zso_A Hypothetical protein; s 23.9 53 0.0018 30.0 3.4 45 27-72 33-82 (164)
88 2elx_A Zinc finger protein 406 23.5 26 0.00089 21.4 0.9 12 60-71 7-18 (35)
89 2m0f_A Zinc finger and BTB dom 23.2 27 0.00094 20.0 0.9 11 61-71 3-13 (29)
90 3i3t_A Ubiquitin carboxyl-term 23.1 32 0.0011 33.2 1.9 83 281-365 169-275 (355)
91 1x3z_A Peptide: N-glycanase; h 22.8 82 0.0028 32.0 4.8 39 286-324 120-165 (335)
92 4esj_A Type-2 restriction enzy 22.1 30 0.001 33.8 1.4 37 31-75 34-70 (257)
93 2kvg_A Zinc finger and BTB dom 21.9 21 0.00073 20.8 0.2 11 61-71 4-14 (27)
94 3pwf_A Rubrerythrin; non heme 21.2 36 0.0012 31.0 1.7 28 286-327 139-166 (170)
95 1rim_A E6APC2 peptide; E6-bind 21.2 30 0.001 21.4 0.8 12 61-72 3-14 (33)
96 2akl_A PHNA-like protein PA012 21.1 32 0.0011 30.6 1.3 28 32-71 28-55 (138)
97 1nj3_A NPL4; NZF domain, rubre 21.0 26 0.00088 22.9 0.5 14 60-73 6-19 (31)
98 2elt_A Zinc finger protein 406 20.7 31 0.0011 21.2 0.9 12 60-71 9-20 (36)
99 2xzf_A Formamidopyrimidine-DNA 20.6 44 0.0015 32.5 2.3 28 32-68 243-270 (271)
100 2fiy_A Protein FDHE homolog; F 20.5 46 0.0016 33.3 2.5 12 29-40 180-191 (309)
101 1wii_A Hypothetical UPF0222 pr 20.3 89 0.003 25.6 3.7 34 286-324 24-57 (85)
102 2elp_A Zinc finger protein 406 20.3 32 0.0011 21.4 0.9 12 60-71 9-20 (37)
103 2elm_A Zinc finger protein 406 20.1 34 0.0012 21.6 1.0 13 60-72 9-21 (37)
104 2lvr_A Zinc finger and BTB dom 25.2 22 0.00076 20.7 0.0 13 60-72 3-15 (30)
No 1
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=100.00 E-value=4.9e-138 Score=1076.80 Aligned_cols=395 Identities=43% Similarity=0.765 Sum_probs=374.4
Q ss_pred EEeccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCccceeeccccCCcceEEEEEeeCCCcccccceEEecCcc
Q 011253 29 QVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESA 108 (490)
Q Consensus 29 eies~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnnEvq~~g~i~~kG~r~tl~V~~~~~~DLnR~VvkS~~a 108 (490)
.++|+||+||++|.||+++|+||||||||||||.|+||||||||||++|+++|||+||+|+|+ +++|||||||||++|
T Consensus 10 ~~~s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ev~~~g~~~pkG~r~tL~V~--~~~DLnr~VvKS~ta 87 (404)
T 2qkd_A 10 SIESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLTVR--SQEDMNREVVKTDSA 87 (404)
T ss_dssp -CEEECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEEEEEEESSCSSEEEEEEEEC--SHHHHTCEEEECTTC
T ss_pred CccccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchheeeECcccCCCcEEEEEEEC--ChhcccceEEEcCCc
Confidence 589999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EEEEeeeeeEeCCCCCCCceeeHHHHHHHHHHHHHHhhHHHhcCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCCCe
Q 011253 109 TIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNS 188 (490)
Q Consensus 109 ti~IPEL~~eI~p~~~~G~iTTVEGlL~~~~~~L~~~~~~r~~~~~e~~~ki~~~i~kL~~~~~g~~pFTliidDPsGNS 188 (490)
+|+||||+|||||++++|+||||||+|.+++++|+..|+.|+..+|+.++||++|+++|+++++|+.|||||||||+|||
T Consensus 88 ti~IPEL~~eI~pg~~~G~iTTVEGlL~~~~~~L~~~~~~r~~~~~e~~~ki~~~i~kL~~~~~g~~pfTliidDP~GnS 167 (404)
T 2qkd_A 88 TTRIPELDFEIPAFSQKGALTTVEGLISRAISGLEQDQPTRRAVEGAIAERIDEFIGKLKDLKQMASPFTLVIDDPSGNS 167 (404)
T ss_dssp EEEEGGGTEEECTTSSCCEEEEHHHHHHHHHHHHHTTHHHHHHHCHHHHHHHHHHHHHHHHGGGCSSCEEEEEEETTSCC
T ss_pred EEEeeeeeEEecCccCCceEEeHHHHHHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCCe
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCCeeEEEecCCHHHHHHcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccCCcHHH
Q 011253 189 FIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRGSVGAVAGHRAIAQSNSAEI 268 (490)
Q Consensus 189 ~I~~~~ap~~D~~~~~~~y~Rt~eq~~~LGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (490)
||+++++|..||+|++++|.||+|||++|||..+++.... ...+
T Consensus 168 ~I~~~~~p~~d~~~~~~~y~Rt~eqn~~LGl~~~~~~~~~---------------------------------~~~d--- 211 (404)
T 2qkd_A 168 FVENPHAPQKDNALVITYYDRTPQQAEMLGLQAEAPEEKA---------------------------------EEED--- 211 (404)
T ss_dssp EECCTTTTSCCTTEEEEEECCCHHHHHHTTC-------------------------------------------CCC---
T ss_pred eeecCCCCCCCCceEEEEcCCCHHHHHhcCCCcccccccc---------------------------------cccc---
Confidence 9999999999999999999999999999999864321000 0000
Q ss_pred HHhhhccCCCCcceEeeccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCccccccCCCCCCCCeEEEEEEcCcc
Q 011253 269 ADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNIN 348 (490)
Q Consensus 269 ~~~~~~~~~~~ev~~~~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~nEVk~gg~i~~kG~ritL~V~~~e 348 (490)
..++|++|++.||+|+++|.|+|++++||||||||||||.|+|||||+||||+||+++++|+||||+|++++
T Consensus 212 --------~~~ev~~~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~neVk~~g~i~~~G~ritL~V~~~~ 283 (404)
T 2qkd_A 212 --------LRNEVLQFNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEVKSGGAVEPLGTRITLHITDPS 283 (404)
T ss_dssp --------CCCCEEEEEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEEEEEECSSSCCCEEEEEEEECSGG
T ss_pred --------cccceeeecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcccceeeccccCCCcEEEEEEECChH
Confidence 036899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeeCceeEEecceeeeecCCCccceeEeHHHHHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHhhcCC
Q 011253 349 DLSRDLIKSDTAGVKIPELDLELAGGTLGGIVTTVEGLITKISESLERVHGFSFGDSLDENKRTKWQDFKAKLNKLLSVE 428 (490)
Q Consensus 349 DL~R~VlKS~ta~v~IPEL~lei~pGtl~G~~TTVEGlL~~i~d~L~~~~~~~~gds~~~e~~~k~~~fl~~L~~~~~g~ 428 (490)
||+|+||||+||+|+||||+|+|+||+++|+||||||||.+++++|+..+ |..|||++++.++||++|+++|+++++|+
T Consensus 284 DL~R~VvKS~ta~i~IPEL~lei~pg~~~G~~TTVEGlL~~i~d~L~~~~-~~~~ds~~~~~~~k~~~f~~kL~~~~~g~ 362 (404)
T 2qkd_A 284 DMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLLKDIRELVTKNP-FTLGDSSNPDQSEKLQEFSQKLGQIIEGK 362 (404)
T ss_dssp GGGCEEEECTTCEEEEGGGTEEECTTTTCSEEEEHHHHHHHHHHHHHSSC-CCSSSCCCGGGCHHHHHHHHHHHHHHTTS
T ss_pred HccceeEecCceEEEeeeeeEEecCCCCCceEEeHHHHHHHHHHHHhhcc-cccccCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999977 77899999999999999999999999999
Q ss_pred CceEEEEEcCCCCccccCCCCCCCCCCCeEEEEecCCHHHHHh
Q 011253 429 ESWTLILDDALANSFIAPVTDDIKDDHQLTFEEYERSWEQNEE 471 (490)
Q Consensus 429 ~~fTlIidDP~GnS~I~~~~~~p~~Dp~l~~~~Y~RT~eqne~ 471 (490)
.||||||+||+||||| +|+++|++||+|++++|+||+|||++
T Consensus 363 ~pfTliidDP~GnS~I-~~~~~p~~d~~l~~e~Y~RT~eqne~ 404 (404)
T 2qkd_A 363 MKAHFIMNDPAGNSYL-QNVYAPEDDPEMKVERYKRTFDQNEE 404 (404)
T ss_dssp SCEEEEEEETTCCCEE-CCTTTTSCCTTEEEEEECCCCCTTTC
T ss_pred CCeEEEEECCCCCccc-cCCCCCCCCCCceEEEccCChHHccC
Confidence 9999999999999999 99999999999999999999999984
No 2
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=100.00 E-value=9.9e-65 Score=527.09 Aligned_cols=194 Identities=34% Similarity=0.628 Sum_probs=182.4
Q ss_pred EeeccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCccccccCCCCCCCCeEEEEEEcCcccccceeeeeCceeE
Q 011253 283 TFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKSDTAGV 362 (490)
Q Consensus 283 ~~~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~nEVk~gg~i~~kG~ritL~V~~~eDL~R~VlKS~ta~v 362 (490)
.+++.||+|+++|.|+|++++||||||||||||.|+|||||+||||++|++++||+||||+|++++||+|+||||++|+|
T Consensus 10 ~~~s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ev~~~g~~~pkG~r~tL~V~~~~DLnr~VvKS~tati 89 (404)
T 2qkd_A 10 SIESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLTVRSQEDMNREVVKTDSATT 89 (404)
T ss_dssp -CEEECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEEEEEEESSCSSEEEEEEEECSHHHHTCEEEECTTCEE
T ss_pred CccccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchheeeECcccCCCcEEEEEEECChhcccceEEEcCCcEE
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecceeeeecCCCccceeEeHHHHHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCc
Q 011253 363 KIPELDLELAGGTLGGIVTTVEGLITKISESLERVHGFSFGDSLDENKRTKWQDFKAKLNKLLSVEESWTLILDDALANS 442 (490)
Q Consensus 363 ~IPEL~lei~pGtl~G~~TTVEGlL~~i~d~L~~~~~~~~gds~~~e~~~k~~~fl~~L~~~~~g~~~fTlIidDP~GnS 442 (490)
+||||+|+|+||+++|+||||||||+++++.|+..++++ .+.+++.++||++|+++|+++++|+.|||||||||+|||
T Consensus 90 ~IPEL~~eI~pg~~~G~iTTVEGlL~~~~~~L~~~~~~r--~~~~~e~~~ki~~~i~kL~~~~~g~~pfTliidDP~GnS 167 (404)
T 2qkd_A 90 RIPELDFEIPAFSQKGALTTVEGLISRAISGLEQDQPTR--RAVEGAIAERIDEFIGKLKDLKQMASPFTLVIDDPSGNS 167 (404)
T ss_dssp EEGGGTEEECTTSSCCEEEEHHHHHHHHHHHHHTTHHHH--HHHCHHHHHHHHHHHHHHHHGGGCSSCEEEEEEETTSCC
T ss_pred EeeeeeEEecCccCCceEEeHHHHHHHHHHHHHhhhhhh--cccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCCe
Confidence 999999999999999999999999999999999987754 245788899999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCeEEEEecCCHHHHHhcCCCCCCC
Q 011253 443 FIAPVTDDIKDDHQLTFEEYERSWEQNEELGLNDIDT 479 (490)
Q Consensus 443 ~I~~~~~~p~~Dp~l~~~~Y~RT~eqne~LGl~dm~~ 479 (490)
|| +|+++|++||+|++++|+||+|||++|||+++..
T Consensus 168 ~I-~~~~~p~~d~~~~~~~y~Rt~eqn~~LGl~~~~~ 203 (404)
T 2qkd_A 168 FV-ENPHAPQKDNALVITYYDRTPQQAEMLGLQAEAP 203 (404)
T ss_dssp EE-CCTTTTSCCTTEEEEEECCCHHHHHHTTC-----
T ss_pred ee-ecCCCCCCCCceEEEEcCCCHHHHHhcCCCcccc
Confidence 99 8999999999999999999999999999998753
No 3
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=91.03 E-value=0.32 Score=36.75 Aligned_cols=42 Identities=14% Similarity=0.363 Sum_probs=25.8
Q ss_pred EeccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCccc
Q 011253 30 VESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNE 72 (490)
Q Consensus 30 ies~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnnE 72 (490)
....||.||.. ...+....+---.|-.-.-+.|.+||++.++
T Consensus 14 ~~~~Cp~Cg~~-~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 14 TKITCPKCGND-TAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp EECCCTTTCCS-EEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred eEeECCCCCCC-EEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 47889999973 3333222221122344456899999998765
No 4
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=88.85 E-value=0.47 Score=35.85 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=25.9
Q ss_pred eccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCccc
Q 011253 285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSE 326 (490)
Q Consensus 285 ~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~nE 326 (490)
...||.||+. ........+--=.|-.-.-+.|.+||++-++
T Consensus 15 ~~~Cp~Cg~~-~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGND-TAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCS-EEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCC-EEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 6789999983 3333333332222444566899999998654
No 5
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=84.69 E-value=0.26 Score=36.49 Aligned_cols=29 Identities=24% Similarity=0.564 Sum_probs=18.4
Q ss_pred cCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCc
Q 011253 33 LCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERN 70 (490)
Q Consensus 33 ~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrn 70 (490)
.|+.||+.-. .--|-.. ....||.||||-
T Consensus 5 ~C~rCg~~fs-~~el~~l--------P~IrCpyCGyri 33 (48)
T 4ayb_P 5 RCGKCWKTFT-DEQLKVL--------PGVRCPYCGYKI 33 (48)
T ss_dssp CCCCTTTTCC-CCCSCCC--------SSSCCTTTCCSC
T ss_pred EeeccCCCcc-HHHHhhC--------CCcccCccCcEE
Confidence 6999997622 2212222 355799999984
No 6
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=82.43 E-value=0.57 Score=32.63 Aligned_cols=31 Identities=26% Similarity=0.579 Sum_probs=21.3
Q ss_pred ccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCc
Q 011253 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (490)
Q Consensus 286 s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~ 324 (490)
..||.|+.+ .|.+..- +.. +...|..||++.
T Consensus 1 VlC~~C~~p-eT~l~~~-----~~~--~~l~C~aCG~~~ 31 (36)
T 1k81_A 1 VICRECGKP-DTKIIKE-----GRV--HLLKCMACGAIR 31 (36)
T ss_dssp CCCSSSCSC-EEEEEEE-----TTE--EEEEEETTTEEE
T ss_pred CCCcCCCCC-CcEEEEe-----CCc--EEEEhhcCCCcc
Confidence 369999999 4455442 233 457899999975
No 7
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=80.42 E-value=1.4 Score=37.92 Aligned_cols=43 Identities=23% Similarity=0.460 Sum_probs=26.3
Q ss_pred EEeccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCccc
Q 011253 29 QVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNE 72 (490)
Q Consensus 29 eies~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnnE 72 (490)
..+..||.||.+... +....+=--.|-.-.-|.|.+||++..|
T Consensus 70 ~~~~~Cp~C~~~~a~-~~q~q~rsade~mt~fy~C~~C~~~w~~ 112 (113)
T 3h0g_I 70 RSDKECPRCHQHEAV-FYQTHSRRGDTMMTLIYVCVHCGFAFEE 112 (113)
T ss_dssp BCCSCCSSSCCSCEE-EECCCCSSCCCCCCCEEEESSSCCCCCC
T ss_pred CcccCCCCCCCceEE-EEEEecccCCCCCeeEEEcCCCCCEEec
Confidence 345889999966332 2222221123444456899999999876
No 8
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=79.11 E-value=1.7 Score=34.71 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=21.0
Q ss_pred ccCcCCccccceeEEEeecC--CCCcEEE----EEeecCCCCCCc
Q 011253 286 STCGACAASCETRMFMTRIP--YFQEVIV----MASTCDACGYRN 324 (490)
Q Consensus 286 s~Cp~C~~~~~t~m~~~~IP--~FkeviI----msf~C~~CGyr~ 324 (490)
+.||.|+... .....+++| |=+..++ -+..|++||-..
T Consensus 3 m~Cp~Cg~~~-l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~ 46 (78)
T 3ga8_A 3 MKCPVCHQGE-MVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESI 46 (78)
T ss_dssp CBCTTTSSSB-EEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEE
T ss_pred eECCCCCCCe-eEeEEEEEEEEECCEEEEEcCceeEECCCCCCEE
Confidence 5799998641 122222222 2233332 378999999754
No 9
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=78.94 E-value=1.2 Score=33.14 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=22.8
Q ss_pred cceEeeccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCC
Q 011253 280 EVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYR 323 (490)
Q Consensus 280 ev~~~~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr 323 (490)
.|...---||.||.... | .||+. .+.|..|||-
T Consensus 14 kv~~~~k~CP~CG~~~f--m----~~~~~-----R~~C~kCG~t 46 (50)
T 3j20_Y 14 KVIRKNKFCPRCGPGVF--M----ADHGD-----RWACGKCGYT 46 (50)
T ss_dssp CEECSSEECSSSCSSCE--E----EECSS-----EEECSSSCCE
T ss_pred EEEEecccCCCCCCceE--E----ecCCC-----eEECCCCCCE
Confidence 45555566999998642 2 25653 5799999984
No 10
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=78.33 E-value=0.14 Score=45.72 Aligned_cols=50 Identities=20% Similarity=0.340 Sum_probs=33.4
Q ss_pred EeccCCccCCCceEEEE--------EeecCCccceEEEEeecCCCCCCccceeecccc
Q 011253 30 VESLCMRCGENGVTRFL--------LTLIPHFRKVLLSAFECPHCGERNNEVQFAGEI 79 (490)
Q Consensus 30 ies~Cp~Cg~~g~trll--------lt~IP~F~eviimSf~C~~CGyrnnEvq~~g~i 79 (490)
....|.+||......-. .-.+=|+.|++...+.||+||-.+-+|..+.++
T Consensus 69 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G~el 126 (139)
T 3a43_A 69 AVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKGRGV 126 (139)
T ss_dssp CEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEESSCE
T ss_pred CcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecCCeE
Confidence 36779999865332110 001334557777778899999999988877775
No 11
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=77.78 E-value=1.2 Score=36.62 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=25.1
Q ss_pred eEeeccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCccccccCCCCC
Q 011253 282 MTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIP 334 (490)
Q Consensus 282 ~~~~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~nEVk~gg~i~ 334 (490)
+...-.||.||++...+.- . + .+.|++||+ +..||++.
T Consensus 24 q~~~y~Cp~CG~~~v~r~a---t---G-----iW~C~~Cg~----~~aggay~ 61 (83)
T 1vq8_Z 24 MNEDHACPNCGEDRVDRQG---T---G-----IWQCSYCDY----KFTGGSYK 61 (83)
T ss_dssp HHSCEECSSSCCEEEEEEE---T---T-----EEEETTTCC----EEECCSSS
T ss_pred ccccCcCCCCCCcceeccC---C---C-----eEECCCCCC----EecCCEec
Confidence 3456689999986533322 1 1 579999999 45677654
No 12
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=75.66 E-value=1.2 Score=36.68 Aligned_cols=37 Identities=27% Similarity=0.620 Sum_probs=24.9
Q ss_pred EeccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCccceeeccccCC
Q 011253 30 VESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQP 81 (490)
Q Consensus 30 ies~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnnEvq~~g~i~~ 81 (490)
..-.||+||++...+.- . -.+.|++||+.. .+|...|
T Consensus 26 ~~y~Cp~CG~~~v~r~a---t--------GiW~C~~Cg~~~----aggay~~ 62 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQG---T--------GIWQCSYCDYKF----TGGSYKP 62 (83)
T ss_dssp SCEECSSSCCEEEEEEE---T--------TEEEETTTCCEE----ECCSSSS
T ss_pred ccCcCCCCCCcceeccC---C--------CeEECCCCCCEe----cCCEecc
Confidence 45689999976444432 1 168999999954 5666655
No 13
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=74.45 E-value=2.3 Score=36.31 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=22.0
Q ss_pred ccCcCCccc-cceeEEEeecCCCCcEEE----EEeecCCCCCCc
Q 011253 286 STCGACAAS-CETRMFMTRIPYFQEVIV----MASTCDACGYRN 324 (490)
Q Consensus 286 s~Cp~C~~~-~~t~m~~~~IP~FkeviI----msf~C~~CGyr~ 324 (490)
+.||.|++. .........+.|=++.++ -...|+.||-.-
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~ 46 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESI 46 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEE
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEe
Confidence 579999876 322222222333333333 267899999643
No 14
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=74.22 E-value=1.8 Score=32.90 Aligned_cols=33 Identities=18% Similarity=0.459 Sum_probs=23.1
Q ss_pred cceEeeccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCC
Q 011253 280 EVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYR 323 (490)
Q Consensus 280 ev~~~~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr 323 (490)
.|...--.||.||...... +||. .+.|..|||.
T Consensus 13 ki~~~~~fCPkCG~~~~ma------~~~d-----r~~C~kCgyt 45 (55)
T 2k4x_A 13 KLVRKHRFCPRCGPGVFLA------EHAD-----RYSCGRCGYT 45 (55)
T ss_dssp CCCCSSCCCTTTTTTCCCE------ECSS-----EEECTTTCCC
T ss_pred EEEEccccCcCCCCceeEe------ccCC-----EEECCCCCCE
Confidence 4444556799999854111 5554 8899999996
No 15
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=73.97 E-value=4 Score=39.49 Aligned_cols=35 Identities=17% Similarity=0.389 Sum_probs=21.7
Q ss_pred ccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCC
Q 011253 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYR 323 (490)
Q Consensus 286 s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr 323 (490)
..|+.|+..|......-.-| | +.-+...|+.|+=+
T Consensus 55 ~~C~~C~G~G~~~~~~~~g~-~--~~~~~~~C~~C~G~ 89 (248)
T 1nlt_A 55 KKCTSCNGQGIKFVTRQMGP-M--IQRFQTECDVCHGT 89 (248)
T ss_dssp CCCTTSSSSSCEEEEEESSS-E--EEEEECSCTTCSSS
T ss_pred ccCCCCCCCcEEEEEEecCc-e--EEEEEEcCCCCCCc
Confidence 56888888876543332222 2 44577889988643
No 16
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=73.49 E-value=2.3 Score=31.61 Aligned_cols=33 Identities=24% Similarity=0.613 Sum_probs=21.5
Q ss_pred ceEEeccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCc
Q 011253 27 LYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERN 70 (490)
Q Consensus 27 v~eies~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrn 70 (490)
|.-.--.||.||...... |++. .+.|+.|||..
T Consensus 15 v~~~~k~CP~CG~~~fm~------~~~~-----R~~C~kCG~t~ 47 (50)
T 3j20_Y 15 VIRKNKFCPRCGPGVFMA------DHGD-----RWACGKCGYTE 47 (50)
T ss_dssp EECSSEECSSSCSSCEEE------ECSS-----EEECSSSCCEE
T ss_pred EEEecccCCCCCCceEEe------cCCC-----eEECCCCCCEE
Confidence 444455699998643221 4543 68999999953
No 17
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=73.21 E-value=3.2 Score=33.00 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=21.7
Q ss_pred ccCCccCCC-ce--EEEEEeecCCccceE----EEEeecCCCCCCccc
Q 011253 32 SLCMRCGEN-GV--TRFLLTLIPHFRKVL----LSAFECPHCGERNNE 72 (490)
Q Consensus 32 s~Cp~Cg~~-g~--trlllt~IP~F~evi----imSf~C~~CGyrnnE 72 (490)
..||.||.. .. ++-..+.. =+..+ +-.+.|++||-..-+
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~--~G~~~~I~~Vp~~~C~~CGE~~~~ 48 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTF--RGRKTVLKGIHGLYCVHCEESIMN 48 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEE--TTEEEEEEEEEEEEETTTCCEECC
T ss_pred eECCCCCCCeeEeEEEEEEEEE--CCEEEEEcCceeEECCCCCCEEEC
Confidence 579999864 21 12222222 23322 247899999976543
No 18
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=72.85 E-value=0.21 Score=44.64 Aligned_cols=48 Identities=21% Similarity=0.443 Sum_probs=31.4
Q ss_pred eccCcCCccccceeEE-------Ee-ecCCCCcEEEEEeecCCCCCCccccccCCC
Q 011253 285 PSTCGACAASCETRMF-------MT-RIPYFQEVIVMASTCDACGYRNSELKPGGR 332 (490)
Q Consensus 285 ~s~Cp~C~~~~~t~m~-------~~-~IP~FkeviImsf~C~~CGyr~nEVk~gg~ 332 (490)
...|.+||........ .. .+=|+.|++...+.||+||-...+|..|-+
T Consensus 70 ~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G~e 125 (139)
T 3a43_A 70 VFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKGRG 125 (139)
T ss_dssp EEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEESSC
T ss_pred cEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecCCe
Confidence 5679999977543210 00 122335666667889999999999987654
No 19
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=71.20 E-value=11 Score=36.44 Aligned_cols=36 Identities=19% Similarity=0.438 Sum_probs=23.0
Q ss_pred ccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCc
Q 011253 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERN 70 (490)
Q Consensus 32 s~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrn 70 (490)
..|+.|+..|..+.....-| | +.-+...|+.|+=+-
T Consensus 55 ~~C~~C~G~G~~~~~~~~g~-~--~~~~~~~C~~C~G~G 90 (248)
T 1nlt_A 55 KKCTSCNGQGIKFVTRQMGP-M--IQRFQTECDVCHGTG 90 (248)
T ss_dssp CCCTTSSSSSCEEEEEESSS-E--EEEEECSCTTCSSSS
T ss_pred ccCCCCCCCcEEEEEEecCc-e--EEEEEEcCCCCCCcC
Confidence 67999998887654333223 3 445677888886543
No 20
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=67.88 E-value=2.9 Score=31.70 Aligned_cols=32 Identities=28% Similarity=0.676 Sum_probs=21.9
Q ss_pred ceEEeccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCC
Q 011253 27 LYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGER 69 (490)
Q Consensus 27 v~eies~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyr 69 (490)
|...--.||.||.....- ++|. .+.|..|||.
T Consensus 14 i~~~~~fCPkCG~~~~ma------~~~d-----r~~C~kCgyt 45 (55)
T 2k4x_A 14 LVRKHRFCPRCGPGVFLA------EHAD-----RYSCGRCGYT 45 (55)
T ss_dssp CCCSSCCCTTTTTTCCCE------ECSS-----EEECTTTCCC
T ss_pred EEEccccCcCCCCceeEe------ccCC-----EEECCCCCCE
Confidence 444557799998643111 4453 8899999997
No 21
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=65.61 E-value=7.3 Score=28.84 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=24.0
Q ss_pred eeccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCc
Q 011253 284 FPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (490)
Q Consensus 284 ~~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~ 324 (490)
....||.|++.-.+ .....+=--.|=+-.-+.|-+||++-
T Consensus 8 ~~~~Cp~Cg~~~a~-f~q~Q~RsaDE~mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 8 DLFTCGKCKKKNCT-YTQVQTRSADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp CCSCCSSSCSSCEE-EEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred CccCCCCCCCCEEE-EEEecCcCCCCCceEEEEcCCCCCeE
Confidence 34579999975322 22222222234456678899999973
No 22
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=64.81 E-value=5.3 Score=34.01 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=21.3
Q ss_pred ccCCccCCCce-EEEEEeecCCccceEE----EEeecCCCCCCc
Q 011253 32 SLCMRCGENGV-TRFLLTLIPHFRKVLL----SAFECPHCGERN 70 (490)
Q Consensus 32 s~Cp~Cg~~g~-trlllt~IP~F~evii----mSf~C~~CGyrn 70 (490)
..||.||+.-. .......+.|=++.+. -.+.|+.||-.-
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~ 46 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESI 46 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEE
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEe
Confidence 47999986532 2221222222233322 368999999654
No 23
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=63.39 E-value=7.4 Score=28.81 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=24.0
Q ss_pred EeccCCccCCCceE-EEEEeecCCccceEEEEeecCCCCCCc
Q 011253 30 VESLCMRCGENGVT-RFLLTLIPHFRKVLLSAFECPHCGERN 70 (490)
Q Consensus 30 ies~Cp~Cg~~g~t-rlllt~IP~F~eviimSf~C~~CGyrn 70 (490)
....||.||.+... -.+.++- -.|=+-.-|.|..||++.
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~Rs--aDE~mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRS--ADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSS--SSSCCEEEEEESSSCCEE
T ss_pred CccCCCCCCCCEEEEEEecCcC--CCCCceEEEEcCCCCCeE
Confidence 44689999965333 2222222 234455578999999974
No 24
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=61.70 E-value=5.9 Score=34.38 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=26.4
Q ss_pred EeccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCcccee
Q 011253 30 VESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQ 74 (490)
Q Consensus 30 ies~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnnEvq 74 (490)
+...||.||.+..+-+ ...+=--.|=+-.-|.|..||++..+-.
T Consensus 71 t~~~Cp~C~~~~a~~~-q~q~rsade~~t~fy~C~~C~~~w~~nn 114 (122)
T 1twf_I 71 SDRECPKCHSRENVFF-QSQQRRKDTSMVLFFVCLSCSHIFTSDQ 114 (122)
T ss_dssp CCCCCTTTCCCCEEEE-ECSSCCTTCCCCEEEEETTTCCEEECCT
T ss_pred cCCCCCCCCCCEEEEE-EecCccCCCCceEEEEeCCCCCEeccCC
Confidence 4688999996533322 2222112233445689999999876643
No 25
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=60.52 E-value=1.9 Score=34.29 Aligned_cols=30 Identities=27% Similarity=0.607 Sum_probs=20.6
Q ss_pred EeeccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCc
Q 011253 283 TFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (490)
Q Consensus 283 ~~~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~ 324 (490)
.+.-.|+.||..-..+ -++ +..|++||+|-
T Consensus 26 ~v~Y~C~~CG~~~e~~--------~~d----~irCp~CG~RI 55 (70)
T 1twf_L 26 TLKYICAECSSKLSLS--------RTD----AVRCKDCGHRI 55 (70)
T ss_dssp CCCEECSSSCCEECCC--------TTS----TTCCSSSCCCC
T ss_pred eEEEECCCCCCcceeC--------CCC----CccCCCCCceE
Confidence 4556799999885443 122 34899999963
No 26
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=59.78 E-value=1.3 Score=34.27 Aligned_cols=23 Identities=35% Similarity=0.740 Sum_probs=16.8
Q ss_pred eccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCC
Q 011253 31 ESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGER 69 (490)
Q Consensus 31 es~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyr 69 (490)
-+.||+||+ ...||. .|++|||=
T Consensus 30 l~~c~~cGe--------~~~~H~--------vc~~CG~Y 52 (60)
T 3v2d_5 30 LVPCPECKA--------MKPPHT--------VCPECGYY 52 (60)
T ss_dssp CEECTTTCC--------EECTTS--------CCTTTCEE
T ss_pred eeECCCCCC--------eecceE--------EcCCCCcC
Confidence 367999975 344774 59999973
No 27
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=59.56 E-value=6.5 Score=36.42 Aligned_cols=34 Identities=29% Similarity=0.778 Sum_probs=22.4
Q ss_pred ccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCcc
Q 011253 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS 325 (490)
Q Consensus 286 s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~n 325 (490)
..|+.|+.| .|.+....- +.+ +...|..||++..
T Consensus 97 VlC~~C~sP-dT~L~k~~~---~r~--~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 97 VLCPECENP-ETDLHVNPK---KQT--IGNSCKACGYRGM 130 (170)
T ss_dssp HSCTTTSSS-CEEEEEETT---TTE--EEEEETTTCCCCC
T ss_pred EECCCCCCC-ccEEEEecC---CCE--EEEEccccCCccc
Confidence 679999999 455543210 222 3489999999653
No 28
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.30 E-value=4.6 Score=36.93 Aligned_cols=33 Identities=30% Similarity=0.788 Sum_probs=22.5
Q ss_pred ccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCc
Q 011253 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (490)
Q Consensus 286 s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~ 324 (490)
..|+.|+.+ .|.+... ++-=++...|..||++.
T Consensus 104 VlC~~C~sP-dT~L~~~-----~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 104 VLCPECENP-ETDLHVN-----PKKQTIGNSCKACGYRG 136 (157)
T ss_dssp TSCTTTCCS-CCEEEEE-----TTTTEEEEECSSSCCEE
T ss_pred EECCCCCCC-ccEEEEe-----cCCCEEEEEccCCCCCC
Confidence 569999999 4455432 12225677999999964
No 29
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=58.29 E-value=1.7 Score=33.55 Aligned_cols=22 Identities=32% Similarity=0.872 Sum_probs=16.3
Q ss_pred ccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCC
Q 011253 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGER 69 (490)
Q Consensus 32 s~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyr 69 (490)
+.||+||+. ..|| ..|++|||=
T Consensus 31 ~~c~~cG~~--------~~pH--------~vc~~CG~Y 52 (60)
T 2zjr_Z 31 TECPQCHGK--------KLSH--------HICPNCGYY 52 (60)
T ss_dssp EECTTTCCE--------ECTT--------BCCTTTCBS
T ss_pred eECCCCCCE--------eCCc--------eEcCCCCcC
Confidence 569999753 3466 589999974
No 30
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=57.62 E-value=5.9 Score=33.93 Aligned_cols=43 Identities=16% Similarity=0.363 Sum_probs=26.2
Q ss_pred eeccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCcccc
Q 011253 284 FPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSEL 327 (490)
Q Consensus 284 ~~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~nEV 327 (490)
....||.||+.-.+ .....+=--.|-.-.-+.|.+|||+-.|+
T Consensus 71 ~~~~Cp~C~~~~a~-~~q~q~rsade~mt~fy~C~~C~~~w~~~ 113 (113)
T 3h0g_I 71 SDKECPRCHQHEAV-FYQTHSRRGDTMMTLIYVCVHCGFAFEEQ 113 (113)
T ss_dssp CCSCCSSSCCSCEE-EECCCCSSCCCCCCCEEEESSSCCCCCCC
T ss_pred cccCCCCCCCceEE-EEEEecccCCCCCeeEEEcCCCCCEEecC
Confidence 44789999976322 22222211234455568899999998763
No 31
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=56.09 E-value=1.5 Score=34.34 Aligned_cols=31 Identities=26% Similarity=0.679 Sum_probs=21.6
Q ss_pred eEEeccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCc
Q 011253 28 YQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERN 70 (490)
Q Consensus 28 ~eies~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrn 70 (490)
..+.-.|..||..-..+ .+ ....|++||||-
T Consensus 18 ~~v~Y~C~~Cg~~~~l~--------~~----~~iRC~~CG~RI 48 (63)
T 3h0g_L 18 ATMIYLCADCGARNTIQ--------AK----EVIRCRECGHRV 48 (63)
T ss_dssp -CCCCBCSSSCCBCCCC--------SS----SCCCCSSSCCCC
T ss_pred CCeEEECCCCCCeeecC--------CC----CceECCCCCcEE
Confidence 35789999999664322 12 346899999985
No 32
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=48.61 E-value=3.9 Score=36.33 Aligned_cols=42 Identities=19% Similarity=0.400 Sum_probs=0.0
Q ss_pred EEeccCCccCCCceE-EEEEeecCCccceEEEEeecCCCCCCccc
Q 011253 29 QVESLCMRCGENGVT-RFLLTLIPHFRKVLLSAFECPHCGERNNE 72 (490)
Q Consensus 29 eies~Cp~Cg~~g~t-rlllt~IP~F~eviimSf~C~~CGyrnnE 72 (490)
.+...||.||.+..+ ..+.++- --|=+-.-|.|..||++..|
T Consensus 90 ~t~~~CpkCg~~~a~f~q~Q~Rs--aDE~mT~fy~C~~C~~~w~e 132 (133)
T 3qt1_I 90 RSDRECPKCHSRENVFFQLQIRS--ADEPMTTFYKCVNCGHRWKE 132 (133)
T ss_dssp ---------------------------------------------
T ss_pred cccCCCCCCCCceEEEEEEeeec--CCCCCcEEEEcCCCCCEeCc
Confidence 346789999965332 2222211 23444556889999999764
No 33
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=48.02 E-value=3.5 Score=35.40 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=26.7
Q ss_pred EeccCCccCCCceEEEEEeecCCccceEEEEe-ecCCCCCCccceeecccc
Q 011253 30 VESLCMRCGENGVTRFLLTLIPHFRKVLLSAF-ECPHCGERNNEVQFAGEI 79 (490)
Q Consensus 30 ies~Cp~Cg~~g~trlllt~IP~F~eviimSf-~C~~CGyrnnEvq~~g~i 79 (490)
....|.+||..... .-| .+ .||+||-.+..+..+.++
T Consensus 72 ~~~~C~~CG~~~e~-----~~~--------~~~~CP~Cgs~~~~i~~G~el 109 (119)
T 2kdx_A 72 VELECKDCSHVFKP-----NAL--------DYGVCEKCHSKNVIITQGNEM 109 (119)
T ss_dssp CEEECSSSSCEECS-----CCS--------TTCCCSSSSSCCCEEEESSCC
T ss_pred ceEEcCCCCCEEeC-----CCC--------CCCcCccccCCCcEEecCCeE
Confidence 46789999865332 111 46 799999999888777765
No 34
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=46.83 E-value=4.2 Score=34.91 Aligned_cols=36 Identities=17% Similarity=0.452 Sum_probs=26.3
Q ss_pred eeccCcCCccccceeEEEeecCCCCcEEEEEe-ecCCCCCCccccccCCC
Q 011253 284 FPSTCGACAASCETRMFMTRIPYFQEVIVMAS-TCDACGYRNSELKPGGR 332 (490)
Q Consensus 284 ~~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf-~C~~CGyr~nEVk~gg~ 332 (490)
....|.+||...... -| .+ .||+||-...++.+|.+
T Consensus 72 ~~~~C~~CG~~~e~~-----~~--------~~~~CP~Cgs~~~~i~~G~e 108 (119)
T 2kdx_A 72 VELECKDCSHVFKPN-----AL--------DYGVCEKCHSKNVIITQGNE 108 (119)
T ss_dssp CEEECSSSSCEECSC-----CS--------TTCCCSSSSSCCCEEEESSC
T ss_pred ceEEcCCCCCEEeCC-----CC--------CCCcCccccCCCcEEecCCe
Confidence 357799999875431 12 35 79999999999887654
No 35
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=45.91 E-value=8.2 Score=33.64 Aligned_cols=37 Identities=27% Similarity=0.614 Sum_probs=25.3
Q ss_pred EeccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCccceeeccccCC
Q 011253 30 VESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQP 81 (490)
Q Consensus 30 ies~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnnEvq~~g~i~~ 81 (490)
-...||.||+.-..|.-. =.+.|++||+.. .+|+..|
T Consensus 59 akytCPfCGk~~vKR~av-----------GIW~C~~Cgk~f----AGGAy~~ 95 (116)
T 3cc2_Z 59 EDHACPNCGEDRVDRQGT-----------GIWQCSYCDYKF----TGGSYKP 95 (116)
T ss_dssp SCEECSSSCCEEEEEEET-----------TEEEETTTCCEE----ECCSSSS
T ss_pred cCCcCCCCCCceeEecCc-----------eeEECCCCCCEE----ECCCccc
Confidence 456899999765555431 268999999965 4665554
No 36
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.89 E-value=1.2 Score=33.44 Aligned_cols=27 Identities=33% Similarity=0.698 Sum_probs=19.1
Q ss_pred eeccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCcc
Q 011253 284 FPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS 325 (490)
Q Consensus 284 ~~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~n 325 (490)
-...||.|+... | .-++.|..|||++=
T Consensus 13 ~k~iCpkC~a~~---------~------~gaw~CrKCG~~~l 39 (51)
T 3j21_g 13 KKYVCLRCGATN---------P------WGAKKCRKCGYKRL 39 (51)
T ss_dssp SEEECTTTCCEE---------C------TTCSSCSSSSSCCC
T ss_pred CCccCCCCCCcC---------C------CCceecCCCCCccc
Confidence 446699999861 1 22478999999843
No 37
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.54 E-value=19 Score=29.83 Aligned_cols=32 Identities=34% Similarity=0.540 Sum_probs=22.3
Q ss_pred ccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCc
Q 011253 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (490)
Q Consensus 286 s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~ 324 (490)
..||.|+..|...+.. .| +.+...|+.|+=+-
T Consensus 46 ~~C~~C~G~G~~~~~~----G~---~~~~~~C~~C~G~G 77 (104)
T 2ctt_A 46 QHCHYCGGSGMETINT----GP---FVMRSTCRRCGGRG 77 (104)
T ss_dssp EECSSSSSSCEEEEEE----TT---EEEEEECSSSSSSS
T ss_pred ccCCCCCCCEEEEEEe----CC---EEEEEECCcCCCcc
Confidence 4699999888655442 22 45788899997644
No 38
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=43.76 E-value=2.5 Score=37.96 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=16.7
Q ss_pred ccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCc
Q 011253 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (490)
Q Consensus 286 s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~ 324 (490)
..|+.|+.|- |.+..-+ =++...|..||.+.
T Consensus 104 VlC~~C~sPd-T~l~k~~-------r~~~l~C~ACGa~~ 134 (139)
T 3cw2_K 104 VECSTCKSLD-TILKKEK-------KSWYIVCLACGAQT 134 (139)
T ss_dssp SSCCSSSSSC-CCSCSSC-------STTTSSCCC-----
T ss_pred eECCCCCCcC-cEEEEeC-------CeEEEEecCCCCCC
Confidence 6799999994 4442211 22346899999975
No 39
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=43.03 E-value=6.9 Score=35.00 Aligned_cols=31 Identities=26% Similarity=0.624 Sum_probs=21.4
Q ss_pred ccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCc
Q 011253 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (490)
Q Consensus 286 s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~ 324 (490)
..|+.|+.|- |.+..-+ .+ +...|..||.+.
T Consensus 103 VlC~~C~sPd-T~l~k~~-----r~--~~l~C~ACGa~~ 133 (138)
T 1nee_A 103 VICHECNRPD-TRIIREG-----RI--SLLKCEACGAKA 133 (138)
T ss_dssp HHHTCCSSCS-SCCEEET-----TT--TEEECSTTSCCC
T ss_pred EECCCCCCcC-cEEEEcC-----Ce--EEEEccCCCCCc
Confidence 5799999995 4443321 22 457899999975
No 40
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=41.50 E-value=61 Score=28.19 Aligned_cols=55 Identities=16% Similarity=0.306 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhcCCC-cEEEEEECCCCCeeeecCCCCCCCCCeeEEEecCCHHHHHHcC
Q 011253 158 EAIDQFLLKLRACAKGDS-TFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLG 218 (490)
Q Consensus 158 ~ki~~~i~kL~~~~~g~~-pFTliidDPsGNS~I~~~~ap~~D~~~~~~~y~Rt~eq~~~LG 218 (490)
.--+.+++.|.++.+... -|||.... ..||-+- ..=|.+++..+.||.||..+|-
T Consensus 31 ~lS~~Lid~La~i~~~~~e~fTle~i~---s~~i~~G---~~MP~VeV~~fgRt~EqK~~la 86 (122)
T 1u9d_A 31 SLVPTLLNELSSLLSTARNAFTFELIN---TQYFAEG---GVYPMVEVLWFGREQQTQDQIA 86 (122)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCEEEECC---CCCCCTT---CCCCEEEEEESCCCHHHHHHHH
T ss_pred HHhHHHHHHHHHHHCCCcccEEEEEee---eEEEecC---CCCCEEEEEEcCCCHHHHHHHH
Confidence 344566899999988876 99998766 2233222 4568999999999999998754
No 41
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=40.97 E-value=53 Score=28.59 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhhcCCC-ceEEEEEcCCCCccccCCCCCCCCCCCeEEEEecCCHHHHHhc
Q 011253 412 TKWQDFKAKLNKLLSVEE-SWTLILDDALANSFIAPVTDDIKDDHQLTFEEYERSWEQNEEL 472 (490)
Q Consensus 412 ~k~~~fl~~L~~~~~g~~-~fTlIidDP~GnS~I~~~~~~p~~Dp~l~~~~Y~RT~eqne~L 472 (490)
.--+.+++.|.++.+..+ -|||.... ..|| .+. +.=|.+++..+.||.||-..|
T Consensus 31 ~lS~~Lid~La~i~~~~~e~fTle~i~---s~~i-~~G---~~MP~VeV~~fgRt~EqK~~l 85 (122)
T 1u9d_A 31 SLVPTLLNELSSLLSTARNAFTFELIN---TQYF-AEG---GVYPMVEVLWFGREQQTQDQI 85 (122)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCEEEECC---CCCC-CTT---CCCCEEEEEESCCCHHHHHHH
T ss_pred HHhHHHHHHHHHHHCCCcccEEEEEee---eEEE-ecC---CCCCEEEEEEcCCCHHHHHHH
Confidence 344667999999999887 99998876 3444 332 556899999999999997644
No 42
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=40.85 E-value=6.9 Score=35.43 Aligned_cols=32 Identities=19% Similarity=0.469 Sum_probs=21.6
Q ss_pred ccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCcc
Q 011253 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS 325 (490)
Q Consensus 286 s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~n 325 (490)
..||.|+.|-+.-.+ - +. ++...|..||.+..
T Consensus 105 VlC~~C~sPdT~L~k-~-----~r--~~~l~C~ACGa~~~ 136 (148)
T 2d74_B 105 VICPVCGSPDTKIIK-R-----DR--FHFLKCEACGAETP 136 (148)
T ss_dssp SSCSSSCCTTCCCCB-S-----SS--SBCCCCSSSCCCCC
T ss_pred EECCCCCCcCcEEEE-e-----CC--EEEEEecCCCCCcc
Confidence 679999998533322 1 12 45579999999753
No 43
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=40.44 E-value=26 Score=28.64 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=5.2
Q ss_pred CCCCCeEEEE
Q 011253 333 IPEKGKRITL 342 (490)
Q Consensus 333 i~~kG~ritL 342 (490)
|+++.+++.+
T Consensus 61 iSkkrv~f~~ 70 (81)
T 2jrp_A 61 ISKKRVNFVI 70 (81)
T ss_dssp CCTTSSEEEE
T ss_pred eecceEEEEe
Confidence 5555555544
No 44
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=40.34 E-value=15 Score=34.91 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=22.5
Q ss_pred ceEeeccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCC
Q 011253 281 VMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYR 323 (490)
Q Consensus 281 v~~~~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr 323 (490)
.+-....||.||..- ++.+++- + ++.|-+||+.
T Consensus 10 ~~~~~~~CP~Cg~~d--~~~~~~d---g-----~~~C~~Cg~~ 42 (255)
T 1nui_A 10 VFLYHIPCDNCGSSD--GNSLFSD---G-----HTFCYVCEKW 42 (255)
T ss_dssp CEEEEECCSSSCCSS--CEEEETT---S-----CEEETTTCCE
T ss_pred ceecCCcCCCCCCCC--CceEeCC---C-----CeecccCCCc
Confidence 345578999998753 3444431 2 4899999986
No 45
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=39.71 E-value=21 Score=30.89 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=26.0
Q ss_pred eeccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCcccc
Q 011253 284 FPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSEL 327 (490)
Q Consensus 284 ~~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~nEV 327 (490)
....||.||+.-. ......+=--.|=+-.-+.|-.|||+-.+-
T Consensus 71 t~~~Cp~C~~~~a-~~~q~q~rsade~~t~fy~C~~C~~~w~~n 113 (122)
T 1twf_I 71 SDRECPKCHSREN-VFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113 (122)
T ss_dssp CCCCCTTTCCCCE-EEEECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred cCCCCCCCCCCEE-EEEEecCccCCCCceEEEEeCCCCCEeccC
Confidence 3678999997632 222222212234455568899999986653
No 46
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.22 E-value=19 Score=29.57 Aligned_cols=36 Identities=28% Similarity=0.686 Sum_probs=24.5
Q ss_pred eccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCccceeeccccCC
Q 011253 31 ESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQP 81 (490)
Q Consensus 31 es~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnnEvq~~g~i~~ 81 (490)
.-.||-||+....|. -.=-+.|.+||+.. .+|+..|
T Consensus 35 ky~CpfCGk~~vkR~-----------a~GIW~C~kCg~~~----AGGAy~~ 70 (83)
T 3j21_i 35 KHTCPVCGRKAVKRI-----------STGIWQCQKCGATF----AGGAYLP 70 (83)
T ss_dssp CBCCSSSCSSCEEEE-----------ETTEEEETTTCCEE----ECCSSSS
T ss_pred ccCCCCCCCceeEec-----------CcCeEEcCCCCCEE----eCCcccc
Confidence 467999998855552 12238999999974 4666544
No 47
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=38.83 E-value=17 Score=29.18 Aligned_cols=39 Identities=23% Similarity=0.455 Sum_probs=25.4
Q ss_pred ceEeeccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCccccccCCCCC
Q 011253 281 VMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIP 334 (490)
Q Consensus 281 v~~~~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~nEVk~gg~i~ 334 (490)
.+.-...||.|++...-| +-.=...|.+||+. ..||+..
T Consensus 23 ~q~~ky~C~fCgk~~vkR-----------~a~GIW~C~~C~~~----~AGGAy~ 61 (73)
T 1ffk_W 23 KHKKKYKCPVCGFPKLKR-----------ASTSIWVCGHCGYK----IAGGAYT 61 (73)
T ss_pred hcccCccCCCCCCceeEE-----------EEeEEEECCCCCcE----EECCCcc
Confidence 345567899999864322 22334899999985 3466543
No 48
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=38.67 E-value=20 Score=30.00 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=25.0
Q ss_pred EeccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCccceeeccccCC
Q 011253 30 VESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQP 81 (490)
Q Consensus 30 ies~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnnEvq~~g~i~~ 81 (490)
-.-.||-||+....|. -+=-+.|.+||+.. .+|+..|
T Consensus 35 ~ky~CpfCgk~~vkR~-----------a~GIW~C~~C~~~~----AGGAy~~ 71 (92)
T 3izc_m 35 ARYDCSFCGKKTVKRG-----------AAGIWTCSCCKKTV----AGGAYTV 71 (92)
T ss_dssp SCCCCSSSCSSCCEEE-----------ETTEEECTTTCCEE----ECCSSSS
T ss_pred cCCcCCCCCCceeeec-----------ccceEEcCCCCCEE----eCCcccC
Confidence 3457999998865553 12238999999964 4666544
No 49
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=38.45 E-value=23 Score=28.39 Aligned_cols=37 Identities=30% Similarity=0.556 Sum_probs=25.4
Q ss_pred EeccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCccceeeccccCC
Q 011253 30 VESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQP 81 (490)
Q Consensus 30 ies~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnnEvq~~g~i~~ 81 (490)
-...||.||+.-..|.- .=.+.|.+||+.. .+|...|
T Consensus 26 ~ky~C~fCgk~~vkR~a-----------~GIW~C~~C~~~~----AGGAy~~ 62 (73)
T 1ffk_W 26 KKYKCPVCGFPKLKRAS-----------TSIWVCGHCGYKI----AGGAYTP 62 (73)
T ss_pred cCccCCCCCCceeEEEE-----------eEEEECCCCCcEE----ECCCccc
Confidence 45789999977555442 2349999999965 4555544
No 50
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=38.35 E-value=20 Score=30.02 Aligned_cols=36 Identities=25% Similarity=0.587 Sum_probs=24.6
Q ss_pred eccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCccceeeccccCC
Q 011253 31 ESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQP 81 (490)
Q Consensus 31 es~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnnEvq~~g~i~~ 81 (490)
.-.||-||+....|. -.=-+.|.+||+.. .+|+..|
T Consensus 36 ky~CpfCgk~~vkR~-----------a~GIW~C~~Cg~~~----AGGAy~~ 71 (92)
T 3iz5_m 36 KYFCEFCGKFAVKRK-----------AVGIWGCKDCGKVK----AGGAYTM 71 (92)
T ss_dssp CBCCTTTCSSCBEEE-----------ETTEEECSSSCCEE----ECCSSSS
T ss_pred cccCcccCCCeeEec-----------CcceEEcCCCCCEE----eCCcccC
Confidence 457999998865553 12238999999964 4666544
No 51
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=36.50 E-value=24 Score=35.17 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=23.0
Q ss_pred EeccCCccCCCceEE-EEEeecCCccceEEEEeecCCCCCCcc
Q 011253 30 VESLCMRCGENGVTR-FLLTLIPHFRKVLLSAFECPHCGERNN 71 (490)
Q Consensus 30 ies~Cp~Cg~~g~tr-lllt~IP~F~eviimSf~C~~CGyrnn 71 (490)
....||.||..-.+- .+.++= --|=.-.-|.|-.||++..
T Consensus 267 ~~~~C~~C~~~~~~~~q~Q~rs--aDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 267 DRFTCGKCKEKKVSYYQLQTRS--ADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred ccccCCCCCCCeeEEEEeeccc--CCCCCcEEEEeCCCCCcee
Confidence 355899999653322 222221 1233344578999999863
No 52
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.20 E-value=37 Score=27.96 Aligned_cols=33 Identities=24% Similarity=0.583 Sum_probs=22.7
Q ss_pred ccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCcc
Q 011253 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNN 71 (490)
Q Consensus 32 s~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnn 71 (490)
..|+.|+..|..+... .| +.+...|+.|+=+-.
T Consensus 46 ~~C~~C~G~G~~~~~~----G~---~~~~~~C~~C~G~G~ 78 (104)
T 2ctt_A 46 QHCHYCGGSGMETINT----GP---FVMRSTCRRCGGRGS 78 (104)
T ss_dssp EECSSSSSSCEEEEEE----TT---EEEEEECSSSSSSSE
T ss_pred ccCCCCCCCEEEEEEe----CC---EEEEEECCcCCCcce
Confidence 5799999888665432 22 346788999986543
No 53
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=34.23 E-value=23 Score=33.65 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=21.8
Q ss_pred eEEeccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCC
Q 011253 28 YQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGER 69 (490)
Q Consensus 28 ~eies~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyr 69 (490)
.-....||.||... ++.+++- + ++.|-+||+.
T Consensus 11 ~~~~~~CP~Cg~~d--~~~~~~d---g-----~~~C~~Cg~~ 42 (255)
T 1nui_A 11 FLYHIPCDNCGSSD--GNSLFSD---G-----HTFCYVCEKW 42 (255)
T ss_dssp EEEEECCSSSCCSS--CEEEETT---S-----CEEETTTCCE
T ss_pred eecCCcCCCCCCCC--CceEeCC---C-----CeecccCCCc
Confidence 44588999999743 3444431 2 5899999984
No 54
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=33.81 E-value=19 Score=33.27 Aligned_cols=34 Identities=24% Similarity=0.490 Sum_probs=23.3
Q ss_pred ccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCcc
Q 011253 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNN 71 (490)
Q Consensus 32 s~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnn 71 (490)
.+|+.|+.+ .|.|....- +.+ +...|..||.+..
T Consensus 97 VlC~~C~sP-dT~L~k~~~---~r~--~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 97 VLCPECENP-ETDLHVNPK---KQT--IGNSCKACGYRGM 130 (170)
T ss_dssp HSCTTTSSS-CEEEEEETT---TTE--EEEEETTTCCCCC
T ss_pred EECCCCCCC-ccEEEEecC---CCE--EEEEccccCCccc
Confidence 799999877 666654210 222 3589999999764
No 55
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=33.58 E-value=15 Score=31.22 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=11.9
Q ss_pred eEEEEeecCCCCCCccceeecccc
Q 011253 56 VLLSAFECPHCGERNNEVQFAGEI 79 (490)
Q Consensus 56 viimSf~C~~CGyrnnEvq~~g~i 79 (490)
-+.+.|.|.-|+.|+.-..+--++
T Consensus 9 ~~~l~FTC~~C~tRs~k~iSk~aY 32 (100)
T 2e2z_A 9 KMMIAFTCKKCNTRSSHTMSKQAY 32 (100)
T ss_dssp EEEEEEEETTTTEEEEEEEEHHHH
T ss_pred cEEEEEEccCCCCcchhhcCHHHh
Confidence 344555555555555544444444
No 56
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=33.13 E-value=15 Score=30.30 Aligned_cols=39 Identities=31% Similarity=0.653 Sum_probs=25.2
Q ss_pred eccCCccCCCceEEEEE---eecCCccceE-----------EEEeecCCCCCC
Q 011253 31 ESLCMRCGENGVTRFLL---TLIPHFRKVL-----------LSAFECPHCGER 69 (490)
Q Consensus 31 es~Cp~Cg~~g~trlll---t~IP~F~evi-----------imSf~C~~CGyr 69 (490)
-..||.||+....+-|. ..+--|.||+ -..|.||+||-.
T Consensus 8 ~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEE 60 (95)
T 2k5c_A 8 MAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEE 60 (95)
T ss_dssp CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCE
T ss_pred cccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHH
Confidence 36799999876554322 2333445443 357999999964
No 57
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=33.13 E-value=10 Score=34.05 Aligned_cols=32 Identities=28% Similarity=0.750 Sum_probs=19.9
Q ss_pred ccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCc
Q 011253 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERN 70 (490)
Q Consensus 32 s~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrn 70 (490)
..||.||.....++ |-=. ....+.|++||+..
T Consensus 4 ~~C~~CG~~~~~~~-----~~G~--~~~~~~~~~~~~~~ 35 (189)
T 3cng_A 4 KFCSQCGGEVILRI-----PEGD--TLPRYICPKCHTIH 35 (189)
T ss_dssp CBCTTTCCBCEEEC-----CTTC--SSCEEEETTTTEEE
T ss_pred ccCchhCCcccccc-----ccCC--CCcceECCCCCCcc
Confidence 36999998765443 4211 12246799999544
No 58
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.09 E-value=23 Score=32.32 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=23.2
Q ss_pred ccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCc
Q 011253 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERN 70 (490)
Q Consensus 32 s~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrn 70 (490)
.+|+.|+.+ .|.|... ++-=++...|..||.+.
T Consensus 104 VlC~~C~sP-dT~L~~~-----~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 104 VLCPECENP-ETDLHVN-----PKKQTIGNSCKACGYRG 136 (157)
T ss_dssp TSCTTTCCS-CCEEEEE-----TTTTEEEEECSSSCCEE
T ss_pred EECCCCCCC-ccEEEEe-----cCCCEEEEEccCCCCCC
Confidence 799999877 6666442 12224577999999975
No 59
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=31.09 E-value=34 Score=27.93 Aligned_cols=8 Identities=38% Similarity=1.003 Sum_probs=3.9
Q ss_pred cCCccCCC
Q 011253 33 LCMRCGEN 40 (490)
Q Consensus 33 ~Cp~Cg~~ 40 (490)
.||.||++
T Consensus 33 fCPeCgq~ 40 (81)
T 2jrp_A 33 LCPDCRQP 40 (81)
T ss_dssp ECSSSCSC
T ss_pred cCcchhhH
Confidence 45555444
No 60
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=30.78 E-value=20 Score=30.59 Aligned_cols=36 Identities=22% Similarity=0.444 Sum_probs=23.9
Q ss_pred eccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCccceeeccccCC
Q 011253 31 ESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQP 81 (490)
Q Consensus 31 es~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnnEvq~~g~i~~ 81 (490)
.-.||-||+..+.|. -+=-+.|.+||+.. .+|...|
T Consensus 36 ky~CpfCgk~~vKR~-----------a~GIW~C~kCg~~~----AGGAy~~ 71 (103)
T 4a17_Y 36 KYGCPFCGKVAVKRA-----------AVGIWKCKPCKKII----AGGAWEL 71 (103)
T ss_dssp CEECTTTCCEEEEEE-----------ETTEEEETTTTEEE----ECCSSCS
T ss_pred CCCCCCCCCceeeec-----------CcceEEcCCCCCEE----eCCcccC
Confidence 457999987654442 12248999999865 4666544
No 61
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=30.31 E-value=47 Score=33.80 Aligned_cols=37 Identities=27% Similarity=0.593 Sum_probs=17.9
Q ss_pred ccCCccCCCce-EEE-EEeecCC-----ccceEEEEeecCCCCC
Q 011253 32 SLCMRCGENGV-TRF-LLTLIPH-----FRKVLLSAFECPHCGE 68 (490)
Q Consensus 32 s~Cp~Cg~~g~-trl-llt~IP~-----F~eviimSf~C~~CGy 68 (490)
-.|+.||.++. |+. .-+.-|- ++-..+-.+.|.+||.
T Consensus 120 p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~ 163 (335)
T 1x3z_A 120 PDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGN 163 (335)
T ss_dssp CCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCC
T ss_pred CCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCc
Confidence 35777776542 222 1222222 2445556666666654
No 62
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.65 E-value=17 Score=20.82 Aligned_cols=11 Identities=45% Similarity=1.283 Sum_probs=8.6
Q ss_pred eecCCCCCCcc
Q 011253 61 FECPHCGERNN 71 (490)
Q Consensus 61 f~C~~CGyrnn 71 (490)
|.|+.||...+
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 67999998764
No 63
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=29.36 E-value=32 Score=34.49 Aligned_cols=38 Identities=29% Similarity=0.468 Sum_probs=22.5
Q ss_pred ccCCccCCCceEEEE-EeecCC------------ccceEEEEeecCCCCCCc
Q 011253 32 SLCMRCGENGVTRFL-LTLIPH------------FRKVLLSAFECPHCGERN 70 (490)
Q Consensus 32 s~Cp~Cg~~g~trll-lt~IP~------------F~eviimSf~C~~CGyrn 70 (490)
..||.||.. ...++ +...|- ..-.=+..+.|++||+..
T Consensus 13 ~~C~~Cg~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~ 63 (416)
T 4e2x_A 13 TACRVCGGG-VQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQ 63 (416)
T ss_dssp EECTTTSCE-EEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEE
T ss_pred CcCCCCCCe-eeeeeECCCCCccccCCChhhcCccceecceEEECCCCCcee
Confidence 469999987 43332 333331 122345678899998754
No 64
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=29.35 E-value=53 Score=25.36 Aligned_cols=33 Identities=33% Similarity=0.660 Sum_probs=21.7
Q ss_pred eccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCc
Q 011253 285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (490)
Q Consensus 285 ~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~ 324 (490)
...||.|+..|...... .| +.+...|+.|+=+-
T Consensus 28 ~~~C~~C~G~G~~~~~~----g~---~~~~~~C~~C~G~G 60 (79)
T 1exk_A 28 PQTCPTCHGSGQVQMRQ----GF---FAVQQTCPHCQGRG 60 (79)
T ss_dssp CEECTTTTTSSEEEEEE----TT---EEEEEECTTTTTSS
T ss_pred CCCCCCCcCeEEEEEEc----CC---CEEeeECcCCCCcc
Confidence 45799999888654322 22 24677899997543
No 65
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.03 E-value=18 Score=20.91 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=9.2
Q ss_pred EeecCCCCCCcc
Q 011253 60 AFECPHCGERNN 71 (490)
Q Consensus 60 Sf~C~~CGyrnn 71 (490)
.|.|+.||....
T Consensus 3 ~~~C~~C~k~f~ 14 (27)
T 2kvh_A 3 PFSCSLCPQRSR 14 (27)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCcChhhC
Confidence 378999998764
No 66
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=28.53 E-value=24 Score=32.34 Aligned_cols=48 Identities=8% Similarity=-0.038 Sum_probs=38.0
Q ss_pred CcceEeeccCcCCccc----cceeEEEeecCCCCcEEEEEeecCCCCCCccc
Q 011253 279 EEVMTFPSTCGACAAS----CETRMFMTRIPYFQEVIVMASTCDACGYRNSE 326 (490)
Q Consensus 279 ~ev~~~~s~Cp~C~~~----~~t~m~~~~IP~FkeviImsf~C~~CGyr~nE 326 (490)
+-.+.|...|.+|+.. ..+++-.+.||.-|-..-+.+.|..|+..++=
T Consensus 31 ~~~~~fkvkC~~C~E~~~kv~v~~~e~~ei~gsRG~aNfv~KCk~C~re~Si 82 (164)
T 1zso_A 31 EYLWIFNIRDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTEYPKYSTI 82 (164)
T ss_dssp TCCEEEEEEETTSSCEEEEEEECTTCBEECTTSSCEESEEECCSSSSCCEEE
T ss_pred CcEEEEEEEECCCCcccCCEEEcchheeecCCCCcceeEEEeccccCCcceE
Confidence 4578899999999864 34455667889988888999999999977654
No 67
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=28.23 E-value=12 Score=33.06 Aligned_cols=41 Identities=24% Similarity=0.425 Sum_probs=0.0
Q ss_pred eccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCccc
Q 011253 285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSE 326 (490)
Q Consensus 285 ~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~nE 326 (490)
...||.|+..-. .+....+=--.|=+-.-+.|..||++-.|
T Consensus 92 ~~~CpkCg~~~a-~f~q~Q~RsaDE~mT~fy~C~~C~~~w~e 132 (133)
T 3qt1_I 92 DRECPKCHSREN-VFFQLQIRSADEPMTTFYKCVNCGHRWKE 132 (133)
T ss_dssp ------------------------------------------
T ss_pred cCCCCCCCCceE-EEEEEeeecCCCCCcEEEEcCCCCCEeCc
Confidence 467999987532 12222221123445556789999998654
No 68
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=28.12 E-value=2.7e+02 Score=25.06 Aligned_cols=89 Identities=13% Similarity=0.169 Sum_probs=50.9
Q ss_pred EEeccCCccCCCceE---EEEEeecCCccceEEEEeecCCCCCCccc-eeeccccC-----Ccc-eEEEEEeeCCCcc--
Q 011253 29 QVESLCMRCGENGVT---RFLLTLIPHFRKVLLSAFECPHCGERNNE-VQFAGEIQ-----PRG-CNYSLKVPSSDQK-- 96 (490)
Q Consensus 29 eies~Cp~Cg~~g~t---rlllt~IP~F~eviimSf~C~~CGyrnnE-vq~~g~i~-----~kG-~r~tl~V~~~~~~-- 96 (490)
.+...|+.|+..|.. +.+..+||- |.++.. |.+.|+-. +.| ..++++|. .-.
T Consensus 25 ~i~~~c~~c~G~g~~~~~~~l~V~Ip~--------------G~~~G~~ir~~G~G~~~~~g~~GDl~v~i~~~--~h~~F 88 (181)
T 3agx_A 25 KISHKRLNPDGKSIRNEDKILTIEVKK--------------GWKEGTKITFPKEGDQTSNNIPADIVFVLKDK--PHNIF 88 (181)
T ss_dssp EEEEEEECTTSSCEEEEEEEEEEEECT--------------TCCTTCEEEETTCSCCCSSSCCCCEEEEEEEC--CCSSC
T ss_pred EEecccCCCCCceEEEEeEEEEEEECC--------------CccCCcEEEEeeccccCCCCCcccEEEEEEEe--ccccc
Confidence 366679999887764 556677763 222221 22222111 112 55666665 322
Q ss_pred -----cccceEEecC-----ccEEEEee-----eeeEeCCCCCCCceeeHHH
Q 011253 97 -----MFHRQVVKSE-----SATIKIPE-----LDFEIPPEAQRGSLSTVEG 133 (490)
Q Consensus 97 -----DLnR~VvkS~-----~ati~IPE-----L~~eI~p~~~~G~iTTVEG 133 (490)
||...+--|- .+++.||- +.+.+|++++-|.+-.+.|
T Consensus 89 ~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g 140 (181)
T 3agx_A 89 KRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPG 140 (181)
T ss_dssp EEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECSCCCTTCEEEETT
T ss_pred eeeCCcEEEEEEcCHHHHhCCCEEEeECCCCCEEEEECCCccCCCcEEEECC
Confidence 4444443331 36788884 5577888888898888775
No 69
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=27.96 E-value=32 Score=34.49 Aligned_cols=40 Identities=18% Similarity=0.409 Sum_probs=23.7
Q ss_pred ccCcCCccccceeE-EEeecCC------------CCcEEEEEeecCCCCCCccc
Q 011253 286 STCGACAASCETRM-FMTRIPY------------FQEVIVMASTCDACGYRNSE 326 (490)
Q Consensus 286 s~Cp~C~~~~~t~m-~~~~IP~------------FkeviImsf~C~~CGyr~nE 326 (490)
..||.|+.+ .... -+-..|- ..-.=+-...|.+||+....
T Consensus 13 ~~C~~Cg~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~~~ 65 (416)
T 4e2x_A 13 TACRVCGGG-VQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQLT 65 (416)
T ss_dssp EECTTTSCE-EEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEES
T ss_pred CcCCCCCCe-eeeeeECCCCCccccCCChhhcCccceecceEEECCCCCceeec
Confidence 469999988 3222 2222221 12234677889999976543
No 70
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=27.70 E-value=13 Score=26.81 Aligned_cols=27 Identities=33% Similarity=0.720 Sum_probs=16.7
Q ss_pred cCcCCcc-ccceeEEEeecCCCCcEEEEEeecCCCCCCc
Q 011253 287 TCGACAA-SCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (490)
Q Consensus 287 ~Cp~C~~-~~~t~m~~~~IP~FkeviImsf~C~~CGyr~ 324 (490)
.||.|+. +. .++ |-=++ ..|..||.-.
T Consensus 7 ~CP~C~~~~l-----~~d-~~~ge-----lvC~~CG~v~ 34 (50)
T 1pft_A 7 VCPACESAEL-----IYD-PERGE-----IVCAKCGYVI 34 (50)
T ss_dssp SCTTTSCCCE-----EEE-TTTTE-----EEESSSCCBC
T ss_pred eCcCCCCcce-----EEc-CCCCe-----EECcccCCcc
Confidence 5999987 32 111 22233 4699999854
No 71
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=27.56 E-value=19 Score=20.83 Aligned_cols=11 Identities=45% Similarity=1.120 Sum_probs=8.7
Q ss_pred eecCCCCCCcc
Q 011253 61 FECPHCGERNN 71 (490)
Q Consensus 61 f~C~~CGyrnn 71 (490)
|.|+.||....
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 1rik_A 3 FACPECPKRFM 13 (29)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 78999998764
No 72
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=27.54 E-value=14 Score=32.24 Aligned_cols=38 Identities=21% Similarity=0.414 Sum_probs=25.1
Q ss_pred eEeeccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCccccccCCCCC
Q 011253 282 MTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIP 334 (490)
Q Consensus 282 ~~~~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~nEVk~gg~i~ 334 (490)
+.-...||.||+.. ++..-. =.+.|.+||+. ..||++.
T Consensus 57 q~akytCPfCGk~~---vKR~av--------GIW~C~~Cgk~----fAGGAy~ 94 (116)
T 3cc2_Z 57 MNEDHACPNCGEDR---VDRQGT--------GIWQCSYCDYK----FTGGSYK 94 (116)
T ss_dssp HHSCEECSSSCCEE---EEEEET--------TEEEETTTCCE----EECCSSS
T ss_pred hccCCcCCCCCCce---eEecCc--------eeEECCCCCCE----EECCCcc
Confidence 44567899999853 433332 25799999995 4566654
No 73
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=27.53 E-value=9.9 Score=34.38 Aligned_cols=32 Identities=22% Similarity=0.611 Sum_probs=22.0
Q ss_pred ccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCcc
Q 011253 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNN 71 (490)
Q Consensus 32 s~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnn 71 (490)
.+|+.|+.+ .|.|..- + =+....|..||.+..
T Consensus 105 VlC~~C~sP-dT~L~k~-----~--r~~~l~C~ACGa~~~ 136 (148)
T 2d74_B 105 VICPVCGSP-DTKIIKR-----D--RFHFLKCEACGAETP 136 (148)
T ss_dssp SSCSSSCCT-TCCCCBS-----S--SSBCCCCSSSCCCCC
T ss_pred EECCCCCCc-CcEEEEe-----C--CEEEEEecCCCCCcc
Confidence 799999876 4555321 1 234679999999764
No 74
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=27.44 E-value=40 Score=33.59 Aligned_cols=38 Identities=34% Similarity=0.586 Sum_probs=22.5
Q ss_pred eccCcCCccc-cceeEEEeecCCCCcEEEEEeecCCCCCCc
Q 011253 285 PSTCGACAAS-CETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (490)
Q Consensus 285 ~s~Cp~C~~~-~~t~m~~~~IP~FkeviImsf~C~~CGyr~ 324 (490)
...||.||+. +......+. -=.|=+-.-+.|-.||++.
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~r--saDe~~t~f~~C~~Cg~~w 306 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTR--SADEPLTTFCTCEACGNRW 306 (309)
T ss_pred cccCCCCCCCeeEEEEeecc--cCCCCCcEEEEeCCCCCce
Confidence 4579999965 332222222 1233344567899999974
No 75
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.25 E-value=40 Score=28.57 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=27.4
Q ss_pred EeccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCccceeecc
Q 011253 30 VESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAG 77 (490)
Q Consensus 30 ies~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnnEvq~~g 77 (490)
++..||.|+.....+--.+.=+.=..-+.+-..||.||-.=-..|.=|
T Consensus 31 M~~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~LevLkACG 78 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACG 78 (101)
T ss_dssp CCCBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEEEETT
T ss_pred ccccCccCCCcceecCCEEECccccchhhccccCcchhhHHHHHHHhc
Confidence 458899999775443111111222444566777888887655555444
No 76
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.96 E-value=13 Score=21.28 Aligned_cols=13 Identities=31% Similarity=0.910 Sum_probs=9.8
Q ss_pred EeecCCCCCCccc
Q 011253 60 AFECPHCGERNNE 72 (490)
Q Consensus 60 Sf~C~~CGyrnnE 72 (490)
.|.|+.||.....
T Consensus 2 p~~C~~C~k~f~~ 14 (26)
T 2lvu_A 2 PYVCERCGKRFVQ 14 (26)
Confidence 3789999987654
No 77
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=26.56 E-value=13 Score=31.52 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=18.0
Q ss_pred CcEEEEEeecCCCCCCccccccCCCCCCCCe
Q 011253 308 QEVIVMASTCDACGYRNSELKPGGRIPEKGK 338 (490)
Q Consensus 308 keviImsf~C~~CGyr~nEVk~gg~i~~kG~ 338 (490)
+.-+.|.|+|..||.|+.-..+--++ .+|+
T Consensus 7 ~~~~~l~FTC~~C~tRs~k~iSk~aY-~~Gv 36 (100)
T 2e2z_A 7 KPKMMIAFTCKKCNTRSSHTMSKQAY-EKGT 36 (100)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEHHHH-HTSE
T ss_pred CCcEEEEEEccCCCCcchhhcCHHHh-hCCE
Confidence 34566777777777777666554444 2453
No 78
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=26.51 E-value=15 Score=33.88 Aligned_cols=40 Identities=28% Similarity=0.386 Sum_probs=22.8
Q ss_pred EeccCCccCCCceE-EEEEeecCCccceEEEEeecCCCCCCcc
Q 011253 30 VESLCMRCGENGVT-RFLLTLIPHFRKVLLSAFECPHCGERNN 71 (490)
Q Consensus 30 ies~Cp~Cg~~g~t-rlllt~IP~F~eviimSf~C~~CGyrnn 71 (490)
....||.||..-.+ ..+.++= --|=+-.-|.|..||++..
T Consensus 136 ~~~~Cp~C~~~~a~~~q~Q~rs--aDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 136 DRFTCGKCKEKKVSYYQLQTRS--AAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSSCCSSSCCSCEECCCCCCSC--TTSCCCCCEEETTTCCEEC
T ss_pred CCcCCCCCCCCceEEEEeeccc--CCCCCcEEEEcCCCCCeec
Confidence 45689999965332 1122211 1223334578999999863
No 79
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=26.23 E-value=23 Score=20.44 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=9.1
Q ss_pred eecCCCCCCccc
Q 011253 61 FECPHCGERNNE 72 (490)
Q Consensus 61 f~C~~CGyrnnE 72 (490)
|.|+.||.....
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 689999887643
No 80
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.93 E-value=22 Score=20.80 Aligned_cols=11 Identities=18% Similarity=0.673 Sum_probs=8.8
Q ss_pred eecCCCCCCcc
Q 011253 61 FECPHCGERNN 71 (490)
Q Consensus 61 f~C~~CGyrnn 71 (490)
|.|+.||....
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1paa_A 3 YACGLCNRAFT 13 (30)
T ss_dssp SBCTTTCCBCS
T ss_pred cCCcccCcccC
Confidence 68999998764
No 81
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=25.59 E-value=53 Score=27.79 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=30.2
Q ss_pred eeccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCccccccCC
Q 011253 284 FPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGG 331 (490)
Q Consensus 284 ~~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~nEVk~gg 331 (490)
+...||.|+.+..-+--.+-=+.=..-+.+-..||.||-.--..|.=|
T Consensus 31 M~~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~LevLkACG 78 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACG 78 (101)
T ss_dssp CCCBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEEEETT
T ss_pred ccccCccCCCcceecCCEEECccccchhhccccCcchhhHHHHHHHhc
Confidence 558899999886432211112333556777788888887766666554
No 82
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.40 E-value=23 Score=20.43 Aligned_cols=11 Identities=36% Similarity=1.120 Sum_probs=8.6
Q ss_pred eecCCCCCCcc
Q 011253 61 FECPHCGERNN 71 (490)
Q Consensus 61 f~C~~CGyrnn 71 (490)
|.|+.||....
T Consensus 4 ~~C~~C~k~f~ 14 (28)
T 2kvf_A 4 YSCSVCGKRFS 14 (28)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCcccC
Confidence 78999988654
No 83
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=25.37 E-value=23 Score=20.15 Aligned_cols=11 Identities=18% Similarity=0.603 Sum_probs=8.5
Q ss_pred eecCCCCCCcc
Q 011253 61 FECPHCGERNN 71 (490)
Q Consensus 61 f~C~~CGyrnn 71 (490)
|.|+.||....
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 67899987764
No 84
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.87 E-value=25 Score=20.27 Aligned_cols=12 Identities=25% Similarity=0.883 Sum_probs=9.0
Q ss_pred EeecCCCCCCcc
Q 011253 60 AFECPHCGERNN 71 (490)
Q Consensus 60 Sf~C~~CGyrnn 71 (490)
.|.|+.||....
T Consensus 3 ~~~C~~C~~~f~ 14 (30)
T 2m0d_A 3 PYQCDYCGRSFS 14 (30)
T ss_dssp CEECTTTCCEES
T ss_pred CccCCCCCcccC
Confidence 378999998654
No 85
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=24.49 E-value=25 Score=21.87 Aligned_cols=11 Identities=36% Similarity=1.144 Sum_probs=8.6
Q ss_pred eecCCCCCCcc
Q 011253 61 FECPHCGERNN 71 (490)
Q Consensus 61 f~C~~CGyrnn 71 (490)
|.|+.||....
T Consensus 12 ~~C~~C~k~f~ 22 (37)
T 1p7a_A 12 FQCPDCDRSFS 22 (37)
T ss_dssp BCCTTTCCCBS
T ss_pred ccCCCCCcccC
Confidence 67888888765
No 86
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=23.94 E-value=24 Score=20.34 Aligned_cols=12 Identities=25% Similarity=0.852 Sum_probs=9.0
Q ss_pred eecCCCCCCccc
Q 011253 61 FECPHCGERNNE 72 (490)
Q Consensus 61 f~C~~CGyrnnE 72 (490)
|.|+.||.....
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 679999887643
No 87
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=23.90 E-value=53 Score=30.03 Aligned_cols=45 Identities=9% Similarity=-0.035 Sum_probs=34.3
Q ss_pred ceEEeccCCccCCCceEEEE-----EeecCCccceEEEEeecCCCCCCccc
Q 011253 27 LYQVESLCMRCGENGVTRFL-----LTLIPHFRKVLLSAFECPHCGERNNE 72 (490)
Q Consensus 27 v~eies~Cp~Cg~~g~trll-----lt~IP~F~eviimSf~C~~CGyrnnE 72 (490)
..-+...|.+||+.-.. .. ...||.-|-..=+.+.|..|+..++=
T Consensus 33 ~~~fkvkC~~C~E~~~k-v~v~~~e~~ei~gsRG~aNfv~KCk~C~re~Si 82 (164)
T 1zso_A 33 LWIFNIRDSTSSLTRDN-IQFRKTDILEIPNSRGTANFMIKWTEYPKYSTI 82 (164)
T ss_dssp CEEEEEEETTSSCEEEE-EEECTTCBEECTTSSCEESEEECCSSSSCCEEE
T ss_pred EEEEEEEECCCCcccCC-EEEcchheeecCCCCcceeEEEeccccCCcceE
Confidence 46688899999976444 43 34788888777889999999987764
No 88
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.51 E-value=26 Score=21.36 Aligned_cols=12 Identities=17% Similarity=0.537 Sum_probs=9.1
Q ss_pred EeecCCCCCCcc
Q 011253 60 AFECPHCGERNN 71 (490)
Q Consensus 60 Sf~C~~CGyrnn 71 (490)
.|.|+.||....
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 2elx_A 7 GYVCALCLKKFV 18 (35)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCcchhC
Confidence 378999998764
No 89
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.22 E-value=27 Score=19.96 Aligned_cols=11 Identities=27% Similarity=0.981 Sum_probs=8.3
Q ss_pred eecCCCCCCcc
Q 011253 61 FECPHCGERNN 71 (490)
Q Consensus 61 f~C~~CGyrnn 71 (490)
|.|+.||....
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 67999987654
No 90
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=23.05 E-value=32 Score=33.21 Aligned_cols=83 Identities=23% Similarity=0.351 Sum_probs=47.9
Q ss_pred ceEeeccCcCCccccceeE----EEeecCC-----------------CCcEEEEE---eecCCCCCCccccccCCCCCCC
Q 011253 281 VMTFPSTCGACAASCETRM----FMTRIPY-----------------FQEVIVMA---STCDACGYRNSELKPGGRIPEK 336 (490)
Q Consensus 281 v~~~~s~Cp~C~~~~~t~m----~~~~IP~-----------------FkeviIms---f~C~~CGyr~nEVk~gg~i~~k 336 (490)
...-...|+.|+....+.- +...||. +++-.+-. ..|+.||.+..-.|.. .|..-
T Consensus 169 ~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~~-~i~~l 247 (355)
T 3i3t_A 169 QLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKL-TVQRF 247 (355)
T ss_dssp EEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEEEE-EEEEC
T ss_pred EEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEEEE-EcccC
Confidence 3455678999987654332 4556653 23333332 8899999887666542 24455
Q ss_pred CeEEEEEEcCcccccceeeeeCceeEEec
Q 011253 337 GKRITLFVKNINDLSRDLIKSDTAGVKIP 365 (490)
Q Consensus 337 G~ritL~V~~~eDL~R~VlKS~ta~v~IP 365 (490)
|.-+.|++.-- +.++...+--...|.+|
T Consensus 248 P~vL~i~lkRF-~~~~~~~~K~~~~v~fp 275 (355)
T 3i3t_A 248 PRILVLHLNRF-SASRGSIKKSSVGVDFP 275 (355)
T ss_dssp CSEEEEEECCE-ECCSSCCEECCCCCBCC
T ss_pred ChheEEEhhhe-ecCCCCceECCcceeCC
Confidence 66777776532 22333333444556677
No 91
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=22.76 E-value=82 Score=32.02 Aligned_cols=39 Identities=21% Similarity=0.452 Sum_probs=26.7
Q ss_pred ccCcCCccccc-eeE-EEeecCC-----CCcEEEEEeecCCCCCCc
Q 011253 286 STCGACAASCE-TRM-FMTRIPY-----FQEVIVMASTCDACGYRN 324 (490)
Q Consensus 286 s~Cp~C~~~~~-t~m-~~~~IP~-----FkeviImsf~C~~CGyr~ 324 (490)
-.|+.||.++. ++. .-+.-|- ++-..+-.+.|.+||.-.
T Consensus 120 p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~ 165 (335)
T 1x3z_A 120 PDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNIT 165 (335)
T ss_dssp CCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEE
T ss_pred CCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCccc
Confidence 46999998863 333 1233333 467888999999999843
No 92
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=22.07 E-value=30 Score=33.79 Aligned_cols=37 Identities=35% Similarity=0.763 Sum_probs=21.1
Q ss_pred eccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCccceee
Q 011253 31 ESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQF 75 (490)
Q Consensus 31 es~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnnEvq~ 75 (490)
.+.||+||..-...+ .-+-| +--|.|++|+-.. |+++
T Consensus 34 n~yCPnCG~~~l~~f-~nN~P------VaDF~C~~C~Eey-ELKS 70 (257)
T 4esj_A 34 QSYCPNCGNNPLNHF-ENNRP------VADFYCNHCSEEF-ELKS 70 (257)
T ss_dssp HCCCTTTCCSSCEEC-----C------CCEEECTTTCCEE-EEEE
T ss_pred CCcCCCCCChhhhhc-cCCCc------ccccccCCcchhh-eecc
Confidence 478999986432222 11122 2359999998743 4554
No 93
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.85 E-value=21 Score=20.75 Aligned_cols=11 Identities=27% Similarity=0.893 Sum_probs=8.3
Q ss_pred eecCCCCCCcc
Q 011253 61 FECPHCGERNN 71 (490)
Q Consensus 61 f~C~~CGyrnn 71 (490)
|.|+.||...+
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 67889987654
No 94
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=21.21 E-value=36 Score=31.05 Aligned_cols=28 Identities=21% Similarity=0.586 Sum_probs=19.4
Q ss_pred ccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCcccc
Q 011253 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSEL 327 (490)
Q Consensus 286 s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~nEV 327 (490)
-.|++||.--. .+.|- .||-||......
T Consensus 139 ~~C~~CG~i~~-----~~~p~---------~CP~Cg~~~~~F 166 (170)
T 3pwf_A 139 YICPICGYTAV-----DEAPE---------YCPVCGAPKEKF 166 (170)
T ss_dssp EECTTTCCEEE-----SCCCS---------BCTTTCCBGGGC
T ss_pred eEeCCCCCeeC-----CCCCC---------CCCCCCCCHHHc
Confidence 45999997543 35664 899999765543
No 95
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=21.21 E-value=30 Score=21.39 Aligned_cols=12 Identities=42% Similarity=1.038 Sum_probs=9.1
Q ss_pred eecCCCCCCccc
Q 011253 61 FECPHCGERNNE 72 (490)
Q Consensus 61 f~C~~CGyrnnE 72 (490)
|.|+.||...+.
T Consensus 3 ~~C~~C~k~F~~ 14 (33)
T 1rim_A 3 FACPECPKRFMR 14 (33)
T ss_dssp CCCSSSCCCCSS
T ss_pred ccCCCCCchhCC
Confidence 678899887653
No 96
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=21.08 E-value=32 Score=30.58 Aligned_cols=28 Identities=18% Similarity=0.498 Sum_probs=19.7
Q ss_pred ccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCcc
Q 011253 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNN 71 (490)
Q Consensus 32 s~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnn 71 (490)
-.||.|+.+-++-. +.. |.||.||+..+
T Consensus 28 P~CP~C~seytYeD--------g~l----~vCPeC~hEW~ 55 (138)
T 2akl_A 28 PPCPQCNSEYTYED--------GAL----LVCPECAHEWS 55 (138)
T ss_dssp CCCTTTCCCCCEEC--------SSS----EEETTTTEEEC
T ss_pred CCCCCCCCcceEec--------CCe----EECCccccccC
Confidence 46999987644332 332 67999999886
No 97
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=20.96 E-value=26 Score=22.93 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=11.1
Q ss_pred EeecCCCCCCccce
Q 011253 60 AFECPHCGERNNEV 73 (490)
Q Consensus 60 Sf~C~~CGyrnnEv 73 (490)
++.|++|.|.|.-.
T Consensus 6 ~W~C~~CTf~N~~~ 19 (31)
T 1nj3_A 6 MWACQHCTFMNQPG 19 (31)
T ss_dssp CEECSSSCCEECSS
T ss_pred cccCCcccccCCCC
Confidence 57899999988644
No 98
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.73 E-value=31 Score=21.20 Aligned_cols=12 Identities=25% Similarity=1.002 Sum_probs=8.9
Q ss_pred EeecCCCCCCcc
Q 011253 60 AFECPHCGERNN 71 (490)
Q Consensus 60 Sf~C~~CGyrnn 71 (490)
.|.|+.||+..+
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elt_A 9 PYKCPQCSYASA 20 (36)
T ss_dssp SEECSSSSCEES
T ss_pred CCCCCCCCcccC
Confidence 378888887654
No 99
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=20.57 E-value=44 Score=32.54 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=17.8
Q ss_pred ccCCccCCCceEEEEEeecCCccceEEEEeecCCCCC
Q 011253 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGE 68 (490)
Q Consensus 32 s~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGy 68 (490)
-.|+.||......-+- + =++|-||+|--
T Consensus 243 ~pC~~CG~~I~~~~~~------g---R~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVA------G---RGTHFCPVCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEET------T---EEEEECTTTSC
T ss_pred CCCCCCCCEeeEEEEC------C---CceEECCCCCC
Confidence 5699998653221111 1 47999999964
No 100
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.55 E-value=46 Score=33.28 Aligned_cols=12 Identities=33% Similarity=0.902 Sum_probs=9.8
Q ss_pred EEeccCCccCCC
Q 011253 29 QVESLCMRCGEN 40 (490)
Q Consensus 29 eies~Cp~Cg~~ 40 (490)
.-...||+||..
T Consensus 180 ~~~~~CPvCGs~ 191 (309)
T 2fiy_A 180 ESRTLCPACGSP 191 (309)
T ss_dssp TTCSSCTTTCCC
T ss_pred ccCCCCCCCCCc
Confidence 567999999965
No 101
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=20.34 E-value=89 Score=25.56 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=22.1
Q ss_pred ccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCc
Q 011253 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (490)
Q Consensus 286 s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~ 324 (490)
-.||.|++.-.....+. +.--+-...|..||-+.
T Consensus 24 F~CPfCnh~~sV~vkid-----k~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMD-----RARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEE-----TTTTEEEEEESSSCCEE
T ss_pred EcCCCCCCCCeEEEEEE-----ccCCEEEEEcccCCCeE
Confidence 45999998743333222 23336788999999765
No 102
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.33 E-value=32 Score=21.43 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=9.2
Q ss_pred EeecCCCCCCcc
Q 011253 60 AFECPHCGERNN 71 (490)
Q Consensus 60 Sf~C~~CGyrnn 71 (490)
.|.|+.||+...
T Consensus 9 ~~~C~~C~k~f~ 20 (37)
T 2elp_A 9 AMKCPYCDFYFM 20 (37)
T ss_dssp CEECSSSSCEEC
T ss_pred CeECCCCChhhc
Confidence 478999988764
No 103
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.11 E-value=34 Score=21.58 Aligned_cols=13 Identities=15% Similarity=0.501 Sum_probs=9.9
Q ss_pred EeecCCCCCCccc
Q 011253 60 AFECPHCGERNNE 72 (490)
Q Consensus 60 Sf~C~~CGyrnnE 72 (490)
.|.|+.||+....
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elm_A 9 LYYCSQCHYSSIT 21 (37)
T ss_dssp EEECSSSSCEEEC
T ss_pred CeECCCCCcccCC
Confidence 4889999987643
No 104
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=25.19 E-value=22 Score=20.65 Aligned_cols=13 Identities=23% Similarity=0.772 Sum_probs=10.2
Q ss_pred EeecCCCCCCccc
Q 011253 60 AFECPHCGERNNE 72 (490)
Q Consensus 60 Sf~C~~CGyrnnE 72 (490)
.|.|+.||.....
T Consensus 3 ~~~C~~C~k~f~~ 15 (30)
T 2lvr_A 3 PYVCIHCQRQFAD 15 (30)
Confidence 5789999987654
Done!