BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011254
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 26/189 (13%)
Query: 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMAN 275
+T+D + + + I + +E VK E + ++G A +G +LYGPPGTGK+ L A+A+
Sbjct: 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204
Query: 276 YLN---FDVYDLELTNL---RGNMELRNLLI-ATENK-SILVVEDIDCSIELQDRFAKAK 327
+ + V EL G+ +R L + A E+ SI+ +++ID SI + +
Sbjct: 205 HTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID-SIG----STRVE 259
Query: 328 ATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLR 387
+ D V Q T+ +LN +DG +S + II TN D LDPA LR
Sbjct: 260 GSGGGDSEV-----------QRTMLELLNQLDGFETSKNIK--IIMATNRLDILDPALLR 306
Query: 388 PGRMDVHIH 396
PGR+D I
Sbjct: 307 PGRIDRKIE 315
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 95/195 (48%), Gaps = 26/195 (13%)
Query: 210 VNLDHP-ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSS 268
+N + P F +A + + K+ +++ ++ F+K E Y N+G +G LL GPPGTGK+
Sbjct: 1 INAEKPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTL 59
Query: 269 LIAAMANYLNFDVYDLELTNL------RGNMELRNLLIATENK--SILVVEDIDCSIELQ 320
L A+A + + + ++ G +R+L + + SI+ +++ID
Sbjct: 60 LAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDA----- 114
Query: 321 DRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDR 380
K++A V++ N + TL+ +L +DG S I++ TN +
Sbjct: 115 --IGKSRAAGG--------VVSGNDEREQTLNQLLAEMDGFGSENAP-VIVLAATNRPEI 163
Query: 381 LDPAFLRPGRMDVHI 395
LDPA +RPGR D +
Sbjct: 164 LDPALMRPGRFDRQV 178
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 84/177 (47%), Gaps = 26/177 (14%)
Query: 228 KQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELT 287
KQ I + +E + + + Y +G RG LLYGPPGTGK+ L+ A+AN + +
Sbjct: 181 KQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240
Query: 288 NL------RGNMELRNLL-IATENK-SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQP 339
G +R++ +A EN SI+ ++++D SI + RF A D V
Sbjct: 241 EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVD-SIATK-RF---DAQTGSDREV--- 292
Query: 340 VMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIH 396
Q L +L +DG S + +I TN D LDPA LRPGR+D I
Sbjct: 293 --------QRILIELLTQMDGFDQSTNVK--VIMATNRADTLDPALLRPGRLDRKIE 339
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 86/184 (46%), Gaps = 26/184 (14%)
Query: 229 QMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLE 285
Q I + +E +K E + VG +G LLYGPPGTGK+ L A+A N V E
Sbjct: 27 QEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSE 86
Query: 286 LTNL---RGNMELRNLLIATENK--SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPV 340
L G ++++ + K SI+ +++ID AK T+A+
Sbjct: 87 LVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDA--------IAAKRTDAL-------- 130
Query: 341 MNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYC 400
++ Q TL +L +DG + + GD + II TN D LDPA LRPGR D I +
Sbjct: 131 TGGDREVQRTLMQLLAEMDG-FDARGDVK-IIGATNRPDILDPAILRPGRFDRIIEVPAP 188
Query: 401 TSCG 404
G
Sbjct: 189 DEKG 192
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 32/199 (16%)
Query: 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
TFD + ++ + + + +E +K E ++ VG +G LLYGPPGTGK+ L A+A
Sbjct: 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238
Query: 277 L--NF---------DVYDLELTNLRGNMELRNLLIATENKSILVVEDIDCSIELQDRFAK 325
+ NF D Y E + M A E++ ++ D +I + RF++
Sbjct: 239 IGANFIFSPASGIVDKYIGESARIIREM----FAYAKEHEPCIIFMDEVDAIGGR-RFSE 293
Query: 326 AKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAF 385
+ D + Q TL +L +DG + + G +II+ TN D LDPA
Sbjct: 294 G---TSADREI-----------QRTLMELLTQMDG-FDNLGQTKIIM-ATNRPDTLDPAL 337
Query: 386 LRPGRMDVHIHMSYCTSCG 404
LRPGR+D + + G
Sbjct: 338 LRPGRLDRKVEIPLPNEAG 356
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 238 FVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLNFDVYD-LELTNLRG 291
++K E + +G +G LL GPPG GK+ L A+A +L + +E+ G
Sbjct: 24 YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLG 83
Query: 292 NMELRNLLIATENKS--ILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQV 349
+R+L ++ I+ +++ID K ++T + + LNQ
Sbjct: 84 AARVRSLFKEARARAPCIVYIDEIDA-------VGKKRSTTMSGFSNTEEEQTLNQ---- 132
Query: 350 TLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHI 395
+L +DG+ ++ D I++ +TN D LD A +RPGR+D H+
Sbjct: 133 ----LLVEMDGMGTT--DHVIVLASTNRADILDGALMRPGRLDRHV 172
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 28/167 (16%)
Query: 239 VKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL------RGN 292
+KR + ++++G +G L+YGPPGTGK+ L A A N L L G
Sbjct: 201 MKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGA 260
Query: 293 MELRNLLIATENK--SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVT 350
+R+ + K +I+ ++++D I + RF K+ ++ Q T
Sbjct: 261 KLVRDAFALAKEKAPTIIFIDELDA-IGTK-RFDSEKSG--------------DREVQRT 304
Query: 351 LSGMLNFIDGLWSSCGDERI-IIFTTNHKDRLDPAFLRPGRMDVHIH 396
+ +LN +DG S D+R+ ++ TN D LDPA LR GR+D I
Sbjct: 305 MLELLNQLDGFSS---DDRVKVLAATNRVDVLDPALLRSGRLDRKIE 348
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 35/238 (14%)
Query: 229 QMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTN 288
Q I + +E + E Y +G +G +LYG PGTGK+ L A+AN + + +
Sbjct: 192 QEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251
Query: 289 L------RGNMELRNLL-IATENK-SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPV 340
L G R + +A EN SI+ +++ID A T D N
Sbjct: 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEID-----------AIGTKRYDSNS---- 296
Query: 341 MNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHI---HM 397
+ Q T+ +LN +DG + GD ++I+ TN + LDPA +RPGR+D I +
Sbjct: 297 -GGEREIQRTMLELLNQLDG-FDDRGDVKVIM-ATNKIETLDPALIRPGRIDRKILFENP 353
Query: 398 SYCTSCGFKMLASSYLGITEHPLFLEVEGLI-EKAKVTPADVAEQLMRNEVPEIALRE 454
T + +S + ++E + +E L+ K ++ AD+ Q M E +ALRE
Sbjct: 354 DLSTKKKILGIHTSKMNLSED---VNLETLVTTKDDLSGADI--QAMCTEAGLLALRE 406
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 95/227 (41%), Gaps = 31/227 (13%)
Query: 238 FVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL------ELTNLRG 291
F+K + +G +G LL GPPGTGK+ L A+A N + + EL G
Sbjct: 34 FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVG 93
Query: 292 NMELRNLLIATENKS--ILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQV 349
+R+L + + I+ +++ID R A D +
Sbjct: 94 AARVRDLFAQAKAHAPCIVFIDEIDAV----GRHRGAGLGGGHDER------------EQ 137
Query: 350 TLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLA 409
TL+ +L +DG S G I++ TN D LDPA LRPGR D I + G K +
Sbjct: 138 TLNQLLVEMDGFDSKEGI--IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKIL 195
Query: 410 SSYLGITEHPLFLEVEGLIEKAKVTPADVAEQL--MRNEVPEIALRE 454
+ PL +V I AK TP V L + NE +A RE
Sbjct: 196 EIH--TRNKPLAEDVNLEI-IAKRTPGFVGADLENLVNEAALLAARE 239
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 94/227 (41%), Gaps = 31/227 (13%)
Query: 238 FVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL------ELTNLRG 291
F+K + +G +G LL GPPGTG + L A+A N + + EL G
Sbjct: 34 FLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVG 93
Query: 292 NMELRNLLIATENKS--ILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQV 349
+R+L + + I+ +++ID R A D +
Sbjct: 94 AARVRDLFAQAKAHAPCIVFIDEIDAV----GRHRGAGLGGGHDER------------EQ 137
Query: 350 TLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLA 409
TL+ +L +DG S G I++ TN D LDPA LRPGR D I + G K +
Sbjct: 138 TLNQLLVEMDGFDSKEGI--IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKIL 195
Query: 410 SSYLGITEHPLFLEVEGLIEKAKVTPADVAEQL--MRNEVPEIALRE 454
+ PL +V L AK TP V L + NE +A RE
Sbjct: 196 EIH--TRNKPLAEDVN-LEIIAKRTPGFVGADLENLVNEAALLAARE 239
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
TF +A + K+ + + +E +++ ++ +G +G L+ GPPGTGK+ L A+A
Sbjct: 10 TFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 277 LNFDVYDLELTNLR------GNMELRNLLIATENKS--ILVVEDIDCSIELQDRFAKAKA 328
+ + ++ G +R++ + + I+ +++ID R A
Sbjct: 69 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV----GRQRGAGL 124
Query: 329 TNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRP 388
D + TL+ ML +DG + G I+I TN D LDPA LRP
Sbjct: 125 GGGHDER------------EQTLNQMLVEMDGFEGNEG--IIVIAATNRPDVLDPALLRP 170
Query: 389 GRMDVHI 395
GR D +
Sbjct: 171 GRFDRQV 177
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 26/164 (15%)
Query: 243 EFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELTNL---RGNMELR 296
E + +G +G LLYGPPGTGK+ A+AN + V EL G +R
Sbjct: 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVR 292
Query: 297 NL--LIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGM 354
L + T+ I+ ++ID RF + N+V Q T+ +
Sbjct: 293 ELFEMARTKKACIIFFDEIDAV--GGARFDDGAGGD-------------NEV-QRTMLEL 336
Query: 355 LNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMS 398
+ +DG + G+ + ++F TN + LDPA LRPGR+D + S
Sbjct: 337 ITQLDG-FDPRGNIK-VMFATNRPNTLDPALLRPGRIDRKVEFS 378
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 26/168 (15%)
Query: 238 FVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLNFDVYD-LELTNLRG 291
F+K + +G +G LL GPPG GK+ L A+A ++ D +E+ G
Sbjct: 49 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 108
Query: 292 NMELRNLLIATENKS--ILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQV 349
+R+L + + I+ +++ID + + + V N +
Sbjct: 109 AARVRDLFETAKRHAPCIVFIDEIDA-------VGRKRGSG---------VGGGNDEREQ 152
Query: 350 TLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHM 397
TL+ +L +DG +++ TN D LDPA LRPGR D I +
Sbjct: 153 TLNQLLVEMDGFEKDTAI--VVMAATNRPDILDPALLRPGRFDRQIAI 198
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 26/166 (15%)
Query: 238 FVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLNFDVYD-LELTNLRG 291
F+K + +G +G LL GPPG GK+ L A+A ++ D +E+ G
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 292 NMELRNLLIATENKS--ILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQV 349
+R+L + + I+ +++ID + + + V N +
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDA-------VGRKRGSG---------VGGGNDEREQ 161
Query: 350 TLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHI 395
TL+ +L +DG +++ TN D LDPA LRPGR D I
Sbjct: 162 TLNQLLVEMDGFEKDTAI--VVMAATNRPDILDPALLRPGRFDRQI 205
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 239 VKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMAN--YLNF-DVYDLELTNL---RGN 292
V+ + ++ +G G LL GPPG GK+ L A+AN LNF V EL N+
Sbjct: 30 VRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESE 89
Query: 293 MELRNLLIATENKSILVV--EDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVT 350
+R + +N + V+ +++D A D V +NQ
Sbjct: 90 RAVRQVFQRAKNSAPCVIFFDEVD-----------ALCPRRSDRETGASVRVVNQ----- 133
Query: 351 LSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMD 392
+L +DGL + + I+ TN D +DPA LRPGR+D
Sbjct: 134 ---LLTEMDGLEAR--QQVFIMAATNRPDIIDPAILRPGRLD 170
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 22/187 (11%)
Query: 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
T++ + D+K+ + + ++ V+ + + G +G L YGPPG GK+ L A+AN
Sbjct: 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72
Query: 277 LNFDVYDLE----LTNLRGNME--LRNLLIATENKSILVVEDIDCSIELQDRFAKAKATN 330
+ ++ LT G E +R + + V+ + D AKA+ N
Sbjct: 73 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVL-----FFDELDSIAKARGGN 127
Query: 331 AMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGR 390
D + +NQ+ L +DG+ S II TN D +DPA LRPGR
Sbjct: 128 IGDGGGAADRV-INQI--------LTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGR 176
Query: 391 MDVHIHM 397
+D I++
Sbjct: 177 LDQLIYI 183
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 26/168 (15%)
Query: 238 FVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLNFDVYD-LELTNLRG 291
F+K + +G +G LL GPPG GK+ L A+A ++ D +E+ G
Sbjct: 34 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 93
Query: 292 NMELRNLLIATENKS--ILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQV 349
+R+L + + I+ +++ID + + + V N +
Sbjct: 94 AARVRDLFETAKRHAPCIVFIDEIDA-------VGRKRGSG---------VGGGNDEREQ 137
Query: 350 TLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHM 397
TL+ +L +DG +++ TN D LDPA LRPGR D I +
Sbjct: 138 TLNQLLVEMDGFEKDTAI--VVMAATNRPDILDPALLRPGRFDRQIAI 183
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 238 FVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLNFDVYD-LELTNLRG 291
F+K + +G +G LL GPPG GK+ L A+A ++ D +E+ G
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 292 NMELRNLLIATENKS--ILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQV 349
+R+L + + I+ +++ID + + + V N +
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDA-------VGRKRGSG---------VGGGNDEREQ 161
Query: 350 TLSGMLNFIDGLWSSCGDERIIIF-TTNHKDRLDPAFLRPGRMDVHIHM 397
TL+ +L +DG D I++ TN D LDPA LRPGR D I +
Sbjct: 162 TLNQLLVEMDGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQIAI 207
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 29/169 (17%)
Query: 244 FYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLE-LTNLRGNME--LRN 297
++ +G RG LLYGPPGTGK+ + A+AN F + E ++ L G E LR
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288
Query: 298 LLIATENK--SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGML 355
E +I+ ++++D +++ +V + +S +L
Sbjct: 289 AFEEAEKNAPAIIFIDELDAIAPKREK-------------------THGEVERRIVSQLL 329
Query: 356 NFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCG 404
+DGL I++ TN + +DPA R GR D + + + G
Sbjct: 330 TLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 26/189 (13%)
Query: 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
T++ + D+K+ + + ++ V+ + + G +G L YGPPG GK+ L A+AN
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534
Query: 277 LNFDVYDLE----LTNLRGNME--LRNLLIATENKS--ILVVEDIDCSIELQDRFAKAKA 328
+ ++ LT G E +R + + +L +++D AKA+
Sbjct: 535 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS-------IAKARG 587
Query: 329 TNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRP 388
N D + +NQ+ L +DG+ S II TN D +DPA LRP
Sbjct: 588 GNIGDGGGAADRV-INQI--------LTEMDGM--STKKNVFIIGATNRPDIIDPAILRP 636
Query: 389 GRMDVHIHM 397
GR+D I++
Sbjct: 637 GRLDQLIYI 645
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 33/188 (17%)
Query: 225 SDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDV 281
+ +K+M+ E ++ ++ +G RG LLYGPPGTGK+ + A+AN F +
Sbjct: 214 AQIKEMV----ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Query: 282 YDLE-LTNLRGNME--LRNLLIATENK--SILVVEDIDCSIELQDRFAKAKATNAMDLNV 336
E ++ L G E LR E +I+ ++++D +++
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-------------- 315
Query: 337 IQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIH 396
+V + +S +L +DGL I++ TN + +DPA R GR D +
Sbjct: 316 -----THGEVERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVD 368
Query: 397 MSYCTSCG 404
+ + G
Sbjct: 369 IGIPDATG 376
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 26/189 (13%)
Query: 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
T++ + D+K+ + + ++ V+ + + G +G L YGPPG GK+ L A+AN
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534
Query: 277 LNFDVYDLE----LTNLRGNME--LRNLLIATENKS--ILVVEDIDCSIELQDRFAKAKA 328
+ ++ LT G E +R + + +L +++D AKA+
Sbjct: 535 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS-------IAKARG 587
Query: 329 TNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRP 388
N D + +NQ+ L +DG+ S II TN D +DPA LRP
Sbjct: 588 GNIGDGGGAADRV-INQI--------LTEMDGM--STKKNVFIIGATNRPDIIDPAILRP 636
Query: 389 GRMDVHIHM 397
GR+D I++
Sbjct: 637 GRLDQLIYI 645
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 29/169 (17%)
Query: 244 FYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLE-LTNLRGNME--LRN 297
++ +G RG LLYGPPGTGK+ + A+AN F + E ++ L G E LR
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288
Query: 298 LLIATENK--SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGML 355
E +I+ ++++D +++ +V + +S +L
Sbjct: 289 AFEEAEKNAPAIIFIDELDAIAPKREK-------------------THGEVERRIVSQLL 329
Query: 356 NFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCG 404
+DGL I++ TN + +DPA R GR D + + + G
Sbjct: 330 TLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 33/188 (17%)
Query: 225 SDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDV 281
+ +K+M+ E ++ ++ +G RG LLYGPPGTGK+ + A+AN F +
Sbjct: 214 AQIKEMV----ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Query: 282 YDLE-LTNLRGNME--LRNLLIATENK--SILVVEDIDCSIELQDRFAKAKATNAMDLNV 336
E ++ L G E LR E +I+ ++++D +++
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-------------- 315
Query: 337 IQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIH 396
+V + +S +L +DGL I++ TN + +DPA R GR D +
Sbjct: 316 -----THGEVERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVD 368
Query: 397 MSYCTSCG 404
+ + G
Sbjct: 369 IGIPDATG 376
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 33/188 (17%)
Query: 225 SDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDV 281
+ +K+M+ E ++ ++ +G RG LLYGPPGTGK+ + A+AN F +
Sbjct: 214 AQIKEMV----ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Query: 282 YDLE-LTNLRGNME--LRNLLIATENK--SILVVEDIDCSIELQDRFAKAKATNAMDLNV 336
E ++ L G E LR E +I+ ++++D +++
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-------------- 315
Query: 337 IQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIH 396
+V + +S +L +DGL I++ TN + +DPA R GR D +
Sbjct: 316 -----THGEVERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVD 368
Query: 397 MSYCTSCG 404
+ + G
Sbjct: 369 IGIPDATG 376
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 33/188 (17%)
Query: 225 SDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDV 281
+ +K+M+ E ++ ++ +G RG LLYGPPGTGK+ + A+AN F +
Sbjct: 214 AQIKEMV----ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Query: 282 YDLE-LTNLRGNME--LRNLLIATENK--SILVVEDIDCSIELQDRFAKAKATNAMDLNV 336
E ++ L G E LR E +I+ ++++D +++
Sbjct: 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-------------- 315
Query: 337 IQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIH 396
+V + +S +L +DGL I++ TN + +DPA R GR D +
Sbjct: 316 -----THGEVERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVD 368
Query: 397 MSYCTSCG 404
+ + G
Sbjct: 369 IGIPDATG 376
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 218 FDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 277
FD +A KQ + + + R E + + +A RG LL+GPPG GK+ L A+A
Sbjct: 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGL-RAPARGLLLFGPPGNGKTMLAKAVAAES 172
Query: 278 NFDVYDLELTNL------RGNMELRNLL-IATE-NKSILVVEDIDCSIELQDRFAKAKAT 329
N +++ +L G +R L +A E SI+ ++ +D S+ + R + A+
Sbjct: 173 NATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVD-SLLCERREGEHDAS 231
Query: 330 NAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIF-TTNHKDRLDPAFLR 387
+ ++ F DG+ S GD+R+++ TN LD A LR
Sbjct: 232 RRLKTEF-----------------LIEF-DGVQ-SAGDDRVLVMGATNRPQELDEAVLR 271
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 9/71 (12%)
Query: 254 RGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLEL-TNLRGNME--LRNLL-IATENK 305
RG LL+GPPGTGKS L A+A N F + +L + G E ++NL +A ENK
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 306 -SILVVEDIDC 315
SI+ +++ID
Sbjct: 228 PSIIFIDEIDS 238
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 9/71 (12%)
Query: 254 RGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLEL-TNLRGNME--LRNLL-IATENK 305
RG LL+GPPGTGKS L A+A N F + +L + G E ++NL +A ENK
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105
Query: 306 -SILVVEDIDC 315
SI+ +++ID
Sbjct: 106 PSIIFIDEIDS 116
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL----RGNME--LRNLL-IATENK-S 306
G LLYGPPGTGKS L A+A N + + ++L G E ++ L +A ENK S
Sbjct: 62 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 121
Query: 307 ILVVEDIDC 315
I+ ++++D
Sbjct: 122 IIFIDEVDA 130
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 235 LERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----------YLNFDVYD 283
+E F +F A ++G LYG G GKS L+AAMA+ L+F +
Sbjct: 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193
Query: 284 LELTNLRGNMELRNLLIATENKSILVVEDIDC 315
+++ N N ++ + A +N +L+++DI
Sbjct: 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGA 225
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL----RGNME--LRNLL-IATENK-S 306
G LLYGPPGTGKS L A+A N + + ++L G E ++ L +A ENK S
Sbjct: 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 112
Query: 307 ILVVEDIDC 315
I+ ++ +D
Sbjct: 113 IIFIDQVDA 121
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL----RGNME--LRNLL-IATENK-S 306
G LLYGPPGTGKS L A+A N + + ++L G E ++ L +A ENK S
Sbjct: 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 145
Query: 307 ILVVEDIDC 315
I+ ++ +D
Sbjct: 146 IIFIDQVDA 154
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL----RGNME--LRNLL-IATENK-S 306
G LLYGPPGTGKS L A+A N + + ++L G E ++ L +A ENK S
Sbjct: 71 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 130
Query: 307 ILVVEDIDC 315
I+ ++ +D
Sbjct: 131 IIFIDQVDA 139
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 257 LLYGPPGTGKSSLIAAMA------NYLNFDVYDLELTNLRGNMELRN 297
L YGPPGTGK+S I A+A NY N V +L ++ RG +RN
Sbjct: 50 LFYGPPGTGKTSTIVALAREIYGKNYSNM-VLELNASDDRGIDVVRN 95
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 257 LLYGPPGTGKSSLIAAMANYLNFDV 281
+L+GPPGTGK++L +A Y N DV
Sbjct: 54 ILWGPPGTGKTTLAEVIARYANADV 78
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 33/203 (16%)
Query: 241 RKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAM-----ANYLNFDVYDLELTNLRGNMEL 295
R E + + +A +G LL+GPPG GK+ L A+ A +LN L + +L
Sbjct: 43 RPELFTGL-RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKL 101
Query: 296 RNLLIATE---NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLS 352
L A SI+ ++++D + + + ++ + +
Sbjct: 102 VRALFAVARHMQPSIIFIDEVDSLLSER-------------------SSSEHEASRRLKT 142
Query: 353 GMLNFIDGLWSSCGDERIIIF-TTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASS 411
L DGL + +RI++ TN LD A LR R +++S ++L +
Sbjct: 143 EFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNR 200
Query: 412 YLGITEHPLFLEVEGLIEKAKVT 434
L P L+ E L AK+T
Sbjct: 201 LLQKQGSP--LDTEALRRLAKIT 221
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 241 RKEFYRNVGKAWK---RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRG----NM 293
+K +++ GK R +LYGPPG GK++ +A L +D+ + +++R N
Sbjct: 62 KKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNA 121
Query: 294 ELRNLL 299
++N L
Sbjct: 122 GVKNAL 127
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 243 EFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELT 287
E ++ V + L+ GP G+GKS+ +AAM +YLN Y LT
Sbjct: 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT 157
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 250 KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV 281
K R LL GPPGTGK++L A+A L V
Sbjct: 74 KXAGRAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 250 KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV 281
K R LL GPPGTGK++L A+A L V
Sbjct: 60 KMAGRAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 283
A KR L GP G GKS++ +A LN + YD
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 258 LYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRN 297
L GPPG GK+SL ++A L + L +R E+R
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMA 274
P T D +KQ + LE RKE ++ LL+GPPG GK++L +A
Sbjct: 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHL--------LLFGPPGLGKTTLAHVIA 59
Query: 275 NYLNFDV 281
+ L ++
Sbjct: 60 HELGVNL 66
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV 281
GK R L+ G PGTGK+++ MA L D
Sbjct: 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDT 98
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMA 274
P T D +KQ + LE RKE ++ LL+GPPG GK++L +A
Sbjct: 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHL--------LLFGPPGLGKTTLAHVIA 59
Query: 275 NYLNFDV 281
+ L ++
Sbjct: 60 HELGVNL 66
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMA 274
P T D +KQ + LE RKE ++ LL+GPPG GK++L +A
Sbjct: 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHL--------LLFGPPGLGKTTLAHVIA 59
Query: 275 NYLNFDV 281
+ L ++
Sbjct: 60 HELGVNL 66
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 254 RGYLLYGPPGTGKS---SLIAAMANYLNFDVYDLELTNL---RGNMELRNLLIAT--ENK 305
+G LL+GPPGTGK+ IA+ + F + LT+ G +R L +
Sbjct: 118 KGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQP 177
Query: 306 SILVVEDID 314
+++ +++ID
Sbjct: 178 AVIFIDEID 186
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 257 LLYGPPGTGKSSLIAAMANYL 277
L YGPPGTGK+S I A+ L
Sbjct: 62 LFYGPPGTGKTSTILALTKEL 82
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 257 LLYGPPGTGKSSLIAAMANYLN 278
L+ GP G+GKS+ IA+M +Y+N
Sbjct: 140 LVTGPTGSGKSTTIASMIDYIN 161
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 253 KRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLELTNLRGNMELRNLLIA 301
KRG +L GPPG+GK+ + M N L N +YD+ N + ++L A
Sbjct: 1048 KRGIILCGPPGSGKTMI---MNNALRNSSLYDVVGINFSKDTTTEHILSA 1094
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 208 QSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKS 267
V P + D ++K+ + LE R E +V LL GPPG GK+
Sbjct: 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPPGLGKT 65
Query: 268 SLIAAMANYLNFDVYDLELTNLRGNMELRNLLIATENKSILVVEDI 313
+L +A+ L +++ L ++ +L + E +L +++I
Sbjct: 66 TLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 208 QSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKS 267
V P + D ++K+ + LE R E +V LL GPPG GK+
Sbjct: 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPPGLGKT 65
Query: 268 SLIAAMANYLNFDVYDLELTNLRGNMELRNLLIATENKSILVVEDI 313
+L +A+ L +++ L ++ +L + E +L +++I
Sbjct: 66 TLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 208 QSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKS 267
V P + D ++K+ + LE R E +V LL GPPG GK+
Sbjct: 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPPGLGKT 65
Query: 268 SLIAAMANYLNFDVYDLELTNLRGNMELRNLLIATENKSILVVEDI 313
+L +A+ L +++ L ++ +L + E +L +++I
Sbjct: 66 TLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 208 QSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKS 267
V P + D ++K+ + LE R E +V LL GPPG GK+
Sbjct: 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPPGLGKT 65
Query: 268 SLIAAMANYLNFDVYDLELTNLRGNMELRNLLIATENKSILVVEDI 313
+L +A+ L +++ L ++ +L + E +L +++I
Sbjct: 66 TLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 253 KRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLELTNLRGNMELRNLLIA 301
KRG +L GPPG+GK+ + M N L N +YD+ N + ++L A
Sbjct: 1267 KRGIILCGPPGSGKTMI---MNNALRNSSLYDVVGINFSKDTTTEHILSA 1313
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 208 QSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKS 267
V P + D ++K+ + LE R E +V LL GPPG GK+
Sbjct: 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPPGLGKT 65
Query: 268 SLIAAMANYLNFDVYDLELTNLRGNMELRNLLIATENKSILVVEDI 313
+L +A+ L +++ L ++ +L + E +L +++I
Sbjct: 66 TLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 252 WKRGYLLYGPPGTGKSSLIAAMANYL 277
KR LL G PGTGKS L AMA L
Sbjct: 59 QKRHVLLIGEPGTGKSMLGQAMAELL 84
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 15/57 (26%)
Query: 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLI 270
HP TF +D+ K+ ++ L + K +++GPPGTGK++ +
Sbjct: 181 HPLTFFNTCLDTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTV 222
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 15/57 (26%)
Query: 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLI 270
HP TF +D+ K+ ++ L + K +++GPPGTGK++ +
Sbjct: 181 HPLTFFNTCLDTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTV 222
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 208 QSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKS 267
V P + D ++K+ + LE R E +V LL GPPG G++
Sbjct: 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPPGLGRT 65
Query: 268 SLIAAMANYLNFDVYDLELTNLRGNMELRNLLIATENKSILVVEDI 313
+L +A+ L +++ L ++ +L + E +L +++I
Sbjct: 66 TLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|2AQL|A Chain A, Crystal Structure Of The Mrg15 Mrg Domain
pdb|2AQL|B Chain B, Crystal Structure Of The Mrg15 Mrg Domain
Length = 173
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 92 KRIKINLPNKETKISCSVEKDEEIVDVFNGVQLKWRFSSKQVPTEMVHHPD 142
K+ + N NKE ++ V +E +V G QL ++F Q + HPD
Sbjct: 51 KKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPD 101
>pdb|2F5J|A Chain A, Crystal Structure Of Mrg Domain From Human Mrg15
pdb|2F5J|B Chain B, Crystal Structure Of Mrg Domain From Human Mrg15
Length = 181
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 92 KRIKINLPNKETKISCSVEKDEEIVDVFNGVQLKWRFSSKQVPTEMVHHPD 142
K+ + N NKE ++ V +E +V G QL ++F Q + HPD
Sbjct: 51 KKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPD 101
>pdb|2W58|A Chain A, Crystal Structure Of The Dnai
pdb|2W58|B Chain B, Crystal Structure Of The Dnai
Length = 202
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 236 ERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 277
ERFV E GK K G L+G G GK+ L+AA+AN L
Sbjct: 42 ERFVAEYE----PGKKMK-GLYLHGSFGVGKTYLLAAIANEL 78
>pdb|2LKM|B Chain B, Structural Basis For Molecular Interactions Involving Mrg
Domains: Implications In Chromatin Biology
Length = 172
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 92 KRIKINLPNKETKISCSVEKDEEIVDVFNGVQLKWRFSSKQVPTEMVHHPD 142
++ + N NKE ++ V +E +V G QL ++F Q + HPD
Sbjct: 50 RKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPD 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,683,775
Number of Sequences: 62578
Number of extensions: 503916
Number of successful extensions: 1636
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1548
Number of HSP's gapped (non-prelim): 83
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)