BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011254
(490 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 137/256 (53%), Gaps = 40/256 (15%)
Query: 212 LDHPAT---FDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSS 268
HP + ++ ++S++K+MI DD+ F++ ++Y G ++RGYLLYGPPG+GK+S
Sbjct: 198 FGHPRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTS 257
Query: 269 LIAAMANYLNFDVYDLELTNLRG--NMELRNLLIATENKSILVVEDIDCSIELQDRFAKA 326
+ A+A L++D+ L L +G + L +LL K+++++ED+D + + ++R +
Sbjct: 258 FLYALAGELDYDICVLNLAE-KGLTDDRLNHLLSNVPPKAVVLLEDVDSAFQGRERSGE- 315
Query: 327 KATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFL 386
+ VT SG+LN +DG+ SS DERII TTNH ++LDPA +
Sbjct: 316 ----------------VGFHANVTFSGLLNALDGVTSS--DERIIFMTTNHPEKLDPALV 357
Query: 387 RPGRMDVHIHMSYCTSCGFKMLASSYLG-------------ITEHPLFLEVEGLIEKAKV 433
RPGR+DV ++ T + + + + G ++ ++GL K
Sbjct: 358 RPGRVDVKAYLGNATPEQVREMFTRFYGHSPEMADDLSDIVCPKNTSMASLQGLFVMNKS 417
Query: 434 TPADVAEQLMRNEVPE 449
+PAD + M E+P+
Sbjct: 418 SPADAVD--MAKELPD 431
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 154/302 (50%), Gaps = 29/302 (9%)
Query: 174 HVLKQSKETSTQKKTLKLFTLRYDRMHGMRGDVWQSVNLDHPA---TFDTLAMDSDMKQM 230
++++++KE + +K+ K TL Y M G W+ HP ++ +D ++
Sbjct: 167 NLIEEAKEMALEKEEGK--TLIYTSM----GTDWR--RFGHPRRKRPISSVILDKGKSEL 218
Query: 231 IMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR 290
I+ D+++F+ ++Y + G ++RGYLLYGPPGTGKSS I A+A L + L L
Sbjct: 219 IIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQLSICILNLAGKS 278
Query: 291 -GNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQV--- 346
+ L LL +SI+++EDID +I+ + AK+ +A ++ +
Sbjct: 279 VSDTSLNQLLATAPQRSIILLEDIDSAIQTGNHDLSAKSNSANAPSISSGGLQYQGYYGN 338
Query: 347 PQV-------TLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSY 399
P V T SG+LN +DG+ +S G RI+ TTNH ++LD +RPGR+D+ I +
Sbjct: 339 PSVSSGGSALTFSGLLNALDGVAASEG--RILFMTTNHLEKLDKVLIRPGRVDLQIEIGL 396
Query: 400 CTSCGFKMLASSYLGITEHPLFLEVEGLIEKAKVTPADVAEQLM---RNEVPEI-ALREL 455
C+S + + + T+ L + +E K +PA + M N + I L EL
Sbjct: 397 CSSYQMEQMFLKFY-PTDFDLAKQFVEKLENYKFSPAQLQAYFMTYSNNSIEAINNLNEL 455
Query: 456 IQ 457
I+
Sbjct: 456 IK 457
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 128/231 (55%), Gaps = 23/231 (9%)
Query: 174 HVLKQSKETSTQKKTLKLFTLRYDRMHGMRGDVWQSVNLDHPA-TFDTLAMDSDMKQMIM 232
++L++++E + +++ K T+ Y+ + G W+ ++ ++ + + I+
Sbjct: 149 NILQEARELALKQQVGK--TVMYNAV----GAEWRQFGFPRRRRPLSSVVLEQGISEKIV 202
Query: 233 DDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV-YDLELTNLRG 291
D++ F++ ++Y + G ++RGYLLYGPPG GKSS I A+A L + + +
Sbjct: 203 QDVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEYSICLMSLSDSSLS 262
Query: 292 NMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTL 351
+ L +LL +SI+++ED+D A + DLN P + ++T
Sbjct: 263 DDRLNHLLSVAPQQSIILLEDVDA------------AFVSRDLNKQNPTA-YQGMGRLTF 309
Query: 352 SGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTS 402
SG+LN +DG+ S+ + RI+ TTNH DRLDPA +RPGR+DV ++ +CT+
Sbjct: 310 SGLLNALDGVAST--EARIVFMTTNHIDRLDPALIRPGRVDVKQYVGHCTN 358
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 112/200 (56%), Gaps = 21/200 (10%)
Query: 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF 279
++ +DS +K+ I+DD+ F+K ++Y + G ++RGYLLYGPPG+GK+S I A+A L++
Sbjct: 227 SVILDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDY 286
Query: 280 DVYDLELT-NLRGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQ 338
++ L L+ N + L +L+ +SIL++EDID + F K T +
Sbjct: 287 NICILNLSENNLTDDRLNHLMNNMPERSILLLEDIDAA------FNKRSQTGEQGFH--- 337
Query: 339 PVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMS 398
VT SG+LN +DG+ SS +E I TTNH ++LD A +RPGR+D + +
Sbjct: 338 --------SSVTFSGLLNALDGVTSS--EETITFMTTNHPEKLDAAIMRPGRIDYKVFVG 387
Query: 399 YCTSCGF-KMLASSYLGITE 417
T KM Y G T+
Sbjct: 388 NATPYQVEKMFMKFYPGETD 407
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 115 bits (288), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 109/183 (59%), Gaps = 15/183 (8%)
Query: 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF 279
++ ++S + + I+DD++ F+ ++Y + G ++RGYLLYGPPG GKSS I A+A L +
Sbjct: 190 SVVLESGVAERIVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELGY 249
Query: 280 DVYDLELTNLR-GNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQ 338
+ + L++ + L +LL +SI+++ED+D A + +L +
Sbjct: 250 SICLMSLSDRSLSDDRLNHLLSVAPQQSIILLEDVDA------------AFVSRELLPTE 297
Query: 339 PVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMS 398
+ + ++T SG+LN +DG+ SS + RI+ TTN +RLDPA +RPGR+D+ ++
Sbjct: 298 NPLAYQGMGRLTFSGLLNALDGVASS--EARIVFMTTNFIERLDPALVRPGRVDLKQYVG 355
Query: 399 YCT 401
+C+
Sbjct: 356 HCS 358
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 115 bits (288), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 124/232 (53%), Gaps = 27/232 (11%)
Query: 174 HVLKQSKETSTQKKTLKLFTLRYDRMHGMRGDVWQSVNLDHPA---TFDTLAMDSDMKQM 230
++L++++E + Q++ K M+ G W+ +P +++ + +
Sbjct: 149 NILEEARELALQQEEGKTV------MYTAVGSEWRP--FGYPRRRRPLNSVVLQQGLADR 200
Query: 231 IMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV-YDLELTNL 289
I+ D++ F+ ++Y + G ++RGYLLYGPPG GKSS I A+A L + +
Sbjct: 201 IVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSS 260
Query: 290 RGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQV 349
+ L +LL +S++++ED+D A + DL V PV + ++
Sbjct: 261 LSDDRLNHLLSVAPQQSLVLLEDVDA------------AFLSRDLAVENPV-KYQGLGRL 307
Query: 350 TLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCT 401
T SG+LN +DG+ S+ + RI+ TTNH DRLDPA +RPGR+D+ ++ YC+
Sbjct: 308 TFSGLLNALDGVAST--EARIVFMTTNHVDRLDPALIRPGRVDLKEYVGYCS 357
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 103/185 (55%), Gaps = 16/185 (8%)
Query: 218 FDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 277
D++ + + I+ D+ F+ ++Y + G ++RGYLLYGPPG GKSS I A+A L
Sbjct: 188 LDSVVLQQGLADRIVKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 278 NFDV-YDLELTNLRGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNV 336
+ + + L +LL +S++++ED+D A + DL V
Sbjct: 248 EHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDA------------AFLSRDLAV 295
Query: 337 IQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIH 396
P+ + ++T SG+LN +DG+ S+ + RI+ TTN+ DRLDPA +RPGR+D+ +
Sbjct: 296 ENPI-KYQGLGRLTFSGLLNALDGVAST--EARIVFMTTNYIDRLDPALIRPGRVDLKEY 352
Query: 397 MSYCT 401
+ YC+
Sbjct: 353 VGYCS 357
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 124/232 (53%), Gaps = 27/232 (11%)
Query: 174 HVLKQSKETSTQKKTLKLFTLRYDRMHGMRGDVWQSVNLDHPA---TFDTLAMDSDMKQM 230
++L++++E + Q++ K M+ G W+ +P +++ ++ + +
Sbjct: 149 NILEEARELALQQEEGKTV------MYTAVGSEWRP--FGYPRRRRPLNSVVLEQGVTER 200
Query: 231 IMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV-YDLELTNL 289
I+ D+ F+ ++Y + G ++RGYLLYGPPG GKSS I A+A L + +
Sbjct: 201 IVRDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELQHSICLLSLTDSS 260
Query: 290 RGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQV 349
+ L +LL +S++++ED+D A + DL P+ + ++
Sbjct: 261 LSDDRLNHLLSVAPQQSLVLLEDVDA------------AFLSRDLAAENPI-KYQGLGRL 307
Query: 350 TLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCT 401
T SG+LN +DG+ S+ + RI+ TTNH DRLDPA +RPGR+D+ ++ +C+
Sbjct: 308 TFSGLLNALDGVAST--EARIVFMTTNHIDRLDPALIRPGRVDMKEYVGHCS 357
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 138/260 (53%), Gaps = 31/260 (11%)
Query: 152 DRCFELSFHKKYKQVVMDSY------IPHVLKQSKETSTQKKTLKLFTLRYDRMHGMRGD 205
D+ F++ ++ + + +Y I +L+++ S + K T+ Y ++G G+
Sbjct: 118 DQQFDMGAGAPFESISISTYKSNAQLINQLLQEAMTLSLNRDIGK--TVIY--INGGNGN 173
Query: 206 VWQSVNLDHPATFDTLA---MDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPP 262
W+ +P + +L+ + D+K +++D++ F+ + +YRN G ++RGYLLYG P
Sbjct: 174 -WER--FGNPRSIRSLSSVILADDLKSKLIEDIKSFITNESWYRNRGIPYRRGYLLYGEP 230
Query: 263 GTGKSSLIAAMANYLNFDVYDLELTNLR-GNMELRNLLIATENKSILVVEDIDCSIELQD 321
G GKSSLI A+A LN D+ + L++ + ++ +LL KSIL++EDID + +
Sbjct: 231 GNGKSSLINAIAGELNLDICIVSLSSKDIDDKQINHLLNNAPPKSILLIEDIDAAFKSHR 290
Query: 322 RFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRL 381
NV N N +T SG+LN +DG+ S G RI+ TTN + L
Sbjct: 291 D------------NVDSNNNNSNNNNSLTYSGLLNALDGVASQEG--RILFMTTNKIELL 336
Query: 382 DPAFLRPGRMDVHIHMSYCT 401
D A +R GR+D+ I +S T
Sbjct: 337 DSALIREGRIDLKIKVSNAT 356
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L572 PE=3 SV=1
Length = 196
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 107/208 (51%), Gaps = 31/208 (14%)
Query: 269 LIAAMANYLNFDVYDLELTNLRGNMELRNLLIATENK-SILVVEDIDCSIELQDRFAKAK 327
+I A++ + ++ L L N++ + EL NLL A K +ILV+EDIDC+ E AK +
Sbjct: 1 MIKAISTHTKRHIHYLILNNIQDDNELINLLNAVNCKETILVLEDIDCASEAVKSRAKEE 60
Query: 328 ATNAMDLNVIQPVMN----------------LNQVPQVTLSGMLNFIDGLWSSCGDERII 371
T V++ V + + +V ++TLSG+LN +DG+++S G RI+
Sbjct: 61 ET------VVEKVTDDKSTLENKILADQLKKVEKVSKLTLSGILNSLDGIFNSEG--RIV 112
Query: 372 IFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA 431
I TTNH + LDPA +R GR+D+ I S C + ++ G L I
Sbjct: 113 IMTTNHSEVLDPALIRRGRIDMQIEFSNCDRYQIAKMYENFYGKNADSDIL---SKIPSD 169
Query: 432 KVTPADVAEQLM--RNEVPEIALRELIQ 457
+PA V+ L+ RN PE +L EL Q
Sbjct: 170 IYSPAHVSGLLLSYRNN-PENSLIELTQ 196
>sp|A6LD25|FTSH_PARD8 ATP-dependent zinc metalloprotease FtsH OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=ftsH PE=3 SV=1
Length = 684
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 26/193 (13%)
Query: 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAA 272
D TF +A ++ KQ + +++ F+K E Y +G +G LL GPPGTGK+ L A
Sbjct: 190 DRKVTFKDVAGLAEAKQEV-EEIVSFLKNPEKYTELGGKIPKGALLVGPPGTGKTLLAKA 248
Query: 273 MANYLNFDVYDLELTNL------RGNMELRNLLIATENKS--ILVVEDIDCSIELQDRFA 324
+A N + L ++ G +R+L + KS I+ +++ID
Sbjct: 249 VAGEANVPFFSLSGSDFVEMFVGVGASRVRDLFRQAKEKSPCIVFIDEIDA-------VG 301
Query: 325 KAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPA 384
+A+ NA MN N + TL+ +L +DG S+ G II+ TN D LD A
Sbjct: 302 RARGKNAN--------MNSNDERENTLNQLLTEMDGFGSNSG--VIILAATNRADILDKA 351
Query: 385 FLRPGRMDVHIHM 397
LR GR D IH+
Sbjct: 352 LLRAGRFDRQIHV 364
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 90/194 (46%), Gaps = 27/194 (13%)
Query: 219 DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN 278
D +D +++ I + +E+ +K E + VG +G LLYGPPGTGK+ L A+AN+ +
Sbjct: 180 DIGGLDEQIRE-IREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLAKAVANHAD 238
Query: 279 FDVYDLELTNL------RGNMELRNLLIATENK--SILVVEDIDCSIELQDRFAKAKATN 330
L L G +R L K SI+ +++ID
Sbjct: 239 ATFIRLAAPELVQKFIGEGARLVRELFELAREKAPSIIFIDEID---------------- 282
Query: 331 AMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGR 390
A+ ++ + ++ Q TL+ +L +DG D+ +I TN KD LDPA LRPGR
Sbjct: 283 AIGARRMRDATSGDREVQRTLTQLLAEMDGFDPL--DDIKVIAATNRKDILDPALLRPGR 340
Query: 391 MDVHIHMSYCTSCG 404
D HI + G
Sbjct: 341 FDRHIKIPLPDEEG 354
>sp|Q7URM7|FTSH2_RHOBA ATP-dependent zinc metalloprotease FtsH 2 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH2 PE=3 SV=1
Length = 728
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 123/267 (46%), Gaps = 41/267 (15%)
Query: 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAA 272
D P TF+ +A + + + ++ F+K E Y+++G +G LL GPPGTGK+ L A
Sbjct: 245 DLPTTFEDVAGIEEAVDEVREVVD-FLKNSEKYQSLGGRIPKGVLLVGPPGTGKTLLAKA 303
Query: 273 MANYLNFDVYDLELTNL------RGNMELRNLLIATENKS--ILVVEDIDCSIELQDRFA 324
+A + L ++ G +R++ N++ I+ ++++D
Sbjct: 304 IAGEAGVPFFSLSGSDFVEMFVGVGAARVRDMFTQAVNRAPCIIFIDELDA-------LG 356
Query: 325 KAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPA 384
K+++ + V+ + + TL+ +L +DG S+ G I++ TN + LDPA
Sbjct: 357 KSRSGS---------VVGGHDEREQTLNALLVEMDGFDSNSG--VIVVAATNRPETLDPA 405
Query: 385 FLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKAKVTPADVAEQL-- 442
LRPGR D H+ + G + + + ++ + +E++G+ A +T V L
Sbjct: 406 LLRPGRFDRHVLVDRPDVAGREEILAVHVKNVKLDETVELKGI---ASITSGFVGADLAN 462
Query: 443 ---------MRNEVPEIALRELIQFLE 460
RN P +A+ E + +E
Sbjct: 463 LVNEAALLAARNGKPAVAMEEFNEAVE 489
>sp|C5CBU4|ARC_MICLC AAA ATPase forming ring-shaped complexes OS=Micrococcus luteus
(strain ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 /
NCIMB 9278 / NCTC 2665 / VKM Ac-2230) GN=arc PE=3 SV=1
Length = 584
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 16/179 (8%)
Query: 243 EFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELT---NLRGNMELRNLL 299
E YR G +G +LYGPPGTGK+ L A+AN L+ D E + N++G EL N
Sbjct: 272 EVYREHGLRAPKGIMLYGPPGTGKTMLAKAVANALSARSADGERSFFLNVKGP-ELLNKY 330
Query: 300 IATENKSILVV-----EDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGM 354
+ + I V+ E D + F + ++ + + + VPQ +
Sbjct: 331 VGETERQIRVIFDRAREKADAGFPVVIFFDEMESLFRTRGSGVSSDVETTIVPQ-----L 385
Query: 355 LNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYL 413
L IDG+ + + I+I +N +D +DPA LRPGR+DV I + + G + + +L
Sbjct: 386 LTEIDGVEAL--ENVIVIGASNREDMIDPAVLRPGRLDVKIRVDRPDAAGAAEIMAKHL 442
>sp|Q9HGM3|YTA12_SCHPO Mitochondrial respiratory chain complexes assembly protein rca1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=yta12 PE=3 SV=1
Length = 773
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 87/188 (46%), Gaps = 30/188 (15%)
Query: 218 FDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 277
F +A + K+ IM+ +F+K +FY +G RG +L GPPGTGK+ L A A
Sbjct: 295 FADVAGVDEAKEEIME-FVKFLKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEA 353
Query: 278 NFDVYD------LELTNLRGNMELRNLLIATENKS---ILVVEDIDCSIELQDRFAKAKA 328
N LE+ G +R+L AT K+ I+ +++ID KA+
Sbjct: 354 NVPFLSVSGSEFLEMFVGVGPSRVRDLF-ATARKNAPCIIFIDEIDA-------IGKARG 405
Query: 329 TNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFT-TNHKDRLDPAFLR 387
N + TL+ +L +DG SS E I++F TN D LDPA LR
Sbjct: 406 RGGQ--------FGSNDERESTLNQLLVEMDGFTSS---EHIVVFAGTNRPDVLDPALLR 454
Query: 388 PGRMDVHI 395
PGR D I
Sbjct: 455 PGRFDRQI 462
>sp|Q2SF13|FTSH_HAHCH ATP-dependent zinc metalloprotease FtsH OS=Hahella chejuensis
(strain KCTC 2396) GN=ftsH PE=3 SV=1
Length = 619
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 88/196 (44%), Gaps = 27/196 (13%)
Query: 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
TFD +A ++ K+ + + +E F+R VG RG LL GPPGTGK+ L A+A
Sbjct: 174 TFDEVAGQTNAKREVQELVEYLRDPDRFHR-VGALAPRGVLLMGPPGTGKTLLARALAGE 232
Query: 277 LNFDVYDLELTNL------RGNMELRNLL-IATENK-SILVVEDIDCSIELQDRFAKAKA 328
+ Y + + G +R L IA EN SI+ ++++D R A
Sbjct: 233 AGVNFYPMSASEFIEVFVGVGASRVRQLFKIAKENSPSIIFIDELDSV----GRTRGAGY 288
Query: 329 TNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRP 388
D + TL+ +L +DG + D I++ TN D LDPA +RP
Sbjct: 289 GGGHDER------------EQTLNQILAEMDGF--AGHDAVIVLAATNRPDVLDPALMRP 334
Query: 389 GRMDVHIHMSYCTSCG 404
GR D H+ + G
Sbjct: 335 GRFDRHVTLDLPDQEG 350
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 136/293 (46%), Gaps = 36/293 (12%)
Query: 195 RYDRMHGMRGDVWQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKR 254
R D+ +R V Q V T++ + + Q + + +E + R E + VG
Sbjct: 127 RLDKETDVRARVMQ-VEHSPDVTYEDIGGLEEQMQEVRETVEMPLDRPEMFAEVGIDPPS 185
Query: 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL------RGNMELRNLL-IATENK-S 306
G LLYGPPGTGK+ L A+AN N + + L G +R+L +A EN+ +
Sbjct: 186 GVLLYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLFEVARENEPA 245
Query: 307 ILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCG 366
++ +++ID + + +K + ++ Q T+ +L +DG + G
Sbjct: 246 VIFIDEIDA---IASKRTDSKTSGDAEV-------------QRTMMQLLAEMDG-FDERG 288
Query: 367 DERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKM---LASSYLGITEHPLFLE 423
+ RII TN D LDPA LRPGR D I + G ++ + + + +++ F+E
Sbjct: 289 NIRIIA-ATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREIIFQIHTRKMNVSDDVDFVE 347
Query: 424 VEGLIEKA-----KVTPADVAEQLMRNEVPEIALRELIQFLE-IKRRESDESK 470
+ + + A K + +R++ EI +++ + E I++ SDE++
Sbjct: 348 LAEMADNASGADIKAVCTEAGMFAIRDDRTEIFMQDFVDAWEKIQQEASDETE 400
>sp|D0MGU8|FTSH_RHOM4 ATP-dependent zinc metalloprotease FtsH OS=Rhodothermus marinus
(strain ATCC 43812 / DSM 4252 / R-10) GN=ftsH PE=3 SV=1
Length = 697
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 26/191 (13%)
Query: 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAA 272
DH TF +A + K+ + + +E F+K + + +G +G LL GPPGTGK+ L A
Sbjct: 205 DHRVTFKDVAGLDEAKEEVAEIVE-FLKNPKKFTRLGGKLPKGVLLVGPPGTGKTLLAKA 263
Query: 273 MANYLNFDVYDLELTNL------RGNMELRNLLIATENKS--ILVVEDIDCSIELQDRFA 324
+A + + ++ G +R+L + K+ I+ +++ID
Sbjct: 264 VAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFRQAKEKAPCIIFIDEIDA-------IG 316
Query: 325 KAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPA 384
+++ M M N + TL+ +L +DG + G II+ TN D LDPA
Sbjct: 317 RSRGRGIM--------MGANDERENTLNQLLVEMDGFNTDKG--VIIMAATNRPDVLDPA 366
Query: 385 FLRPGRMDVHI 395
LRPGR D I
Sbjct: 367 LLRPGRFDRQI 377
>sp|Q9ZM66|FTSH_HELPJ ATP-dependent zinc metalloprotease FtsH OS=Helicobacter pylori
(strain J99) GN=ftsH PE=3 SV=1
Length = 632
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 33/223 (14%)
Query: 189 LKLFTLRYDRMH-GMRGDVW------QSVNLDHP-ATFDTLAMDSDMKQMIMDDLERFVK 240
L L+ +RM M G ++ + +N + P F+ +A + + K+ +++ ++ F+K
Sbjct: 132 LGLWMFMANRMQKNMGGGIFGMGSAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVD-FLK 190
Query: 241 RKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL------ELTNLRGNME 294
E Y N+G +G LL GPPGTGK+ L A+A + + + E+ G
Sbjct: 191 YPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASR 250
Query: 295 LRNLLIATENK--SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLS 352
+R+L + + SI+ +++ID K++A M ++ N + TL+
Sbjct: 251 VRDLFETAKKQAPSIIFIDEIDA-------IGKSRAAGGM--------ISGNDEREQTLN 295
Query: 353 GMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHI 395
+L +DG S I++ TN + LDPA +RPGR D +
Sbjct: 296 QLLAEMDGFGSENAP-VIVLAATNRPEILDPALMRPGRFDRQV 337
>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana
GN=RPT3 PE=1 SV=1
Length = 408
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 26/177 (14%)
Query: 228 KQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDL 284
KQ I + +E + E Y+ +G RG LLYGPPGTGK+ L A+AN+ V
Sbjct: 164 KQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 223
Query: 285 ELTNL---RGNMELRNLL-IATENK-SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQP 339
E G +R++ +A EN +I+ ++++D A+ A D V +
Sbjct: 224 EFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIAT-----ARFDAQTGADREVQRI 278
Query: 340 VMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIH 396
+M L LN +DG + + +I TN D LDPA LRPGR+D I
Sbjct: 279 LMEL-----------LNQMDGFDQTVNVK--VIMATNRADTLDPALLRPGRLDRKIE 322
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 26/177 (14%)
Query: 228 KQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELT 287
KQ I + +E + + + Y+ +G RG LLYGPPGTGK+ L+ A+AN + +
Sbjct: 175 KQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGS 234
Query: 288 NL------RGNMELRNLL-IATENK-SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQP 339
G +R++ +A EN +I+ +++ID A AT D
Sbjct: 235 EFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEID-----------AIATKRFDAQT--- 280
Query: 340 VMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIH 396
++ Q L +LN +DG S + +I TN D LDPA LRPGR+D I
Sbjct: 281 --GADREVQRILLELLNQMDGFEQSSNVK--VIMATNRADTLDPALLRPGRLDRKIE 333
>sp|Q01939|PRS8_YEAST 26S protease regulatory subunit 8 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT6 PE=1
SV=4
Length = 405
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 26/188 (13%)
Query: 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMAN 275
+T+D + + + I + +E VK E + ++G A +G +LYGPPGTGK+ L A+A+
Sbjct: 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204
Query: 276 YLN---FDVYDLELTNL---RGNMELRNLLI-ATENK-SILVVEDIDCSIELQDRFAKAK 327
+ + V EL G+ +R L + A E+ SI+ +++ID SI + +
Sbjct: 205 HTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID-SIG----STRVE 259
Query: 328 ATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLR 387
+ D V Q T+ +LN +DG +S + II TN D LDPA LR
Sbjct: 260 GSGGGDSEV-----------QRTMLELLNQLDGFETSKNIK--IIMATNRLDILDPALLR 306
Query: 388 PGRMDVHI 395
PGR+D I
Sbjct: 307 PGRIDRKI 314
>sp|Q655S1|FTSH2_ORYSJ ATP-dependent zinc metalloprotease FTSH 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=FTSH2 PE=3 SV=1
Length = 676
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 88/189 (46%), Gaps = 27/189 (14%)
Query: 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
TFD +A + KQ M+ +E F+K+ E + VG +G LL GPPGTGK+ L A+A
Sbjct: 212 TFDDVAGVDEAKQDFMEVVE-FLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGE 270
Query: 277 LN---FDVYDLELTNL---RGNMELRNLL-IATENKSILV-VEDIDCSIELQDRFAKAKA 328
F + E + G +R+L A EN +V V++ID + +
Sbjct: 271 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA-------VGRQRG 323
Query: 329 TNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRP 388
T + N + TL+ +L +DG + G I+I TN D LD A LRP
Sbjct: 324 TG---------IGGGNDEREQTLNQLLTEMDGFEGNTG--IIVIAATNRADILDSALLRP 372
Query: 389 GRMDVHIHM 397
GR D + +
Sbjct: 373 GRFDRQVSV 381
>sp|B2UE66|FTSH_RALPJ ATP-dependent zinc metalloprotease FtsH OS=Ralstonia pickettii
(strain 12J) GN=ftsH PE=3 SV=1
Length = 714
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 33/241 (13%)
Query: 232 MDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR- 290
+ ++ F+K + Y+ +G +G LL G PGTGK+ L A+A + + ++
Sbjct: 252 LSEIVSFLKDPQRYQRLGGKIPKGVLLVGAPGTGKTLLAKAVAGEAGVPFFSMSGSDFVE 311
Query: 291 -----GNMELRNLLIATENKS--ILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNL 343
G +R+L E K+ I+ ++++D K +A NA+
Sbjct: 312 MFVGVGAARVRDLFKQAETKAPCIIFIDELDA-------LGKTRALNAV---------GG 355
Query: 344 NQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSC 403
N+ + TL+ +L +DG S+ G II+ TN + LDPA LRPGR D H+ +
Sbjct: 356 NEEREQTLNQLLVEMDGFDSNKG--VIIMAATNRPEILDPALLRPGRFDRHVALDRPDLK 413
Query: 404 GFKMLASSYL-GITEHPLFLEVEGLIEKAKVTPADVAEQL--MRNEVPEIALRELIQFLE 460
G + + ++ G+ P EV+ L + A TP L + NE +A R+ Q +E
Sbjct: 414 GREQILKVHVKGVVLAP---EVD-LTKLAGRTPGFAGADLANLVNEAALLAARKSKQMVE 469
Query: 461 I 461
+
Sbjct: 470 M 470
>sp|P85200|PRS6B_HELAN 26S protease regulatory subunit 6B homolog OS=Helianthus annuus
PE=1 SV=1
Length = 414
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 26/177 (14%)
Query: 228 KQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDL 284
KQ I + +E + E Y+ +G RG LLYGPPGTGK+ L A+AN+ V
Sbjct: 170 KQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 229
Query: 285 ELTNL---RGNMELRNLL-IATENK-SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQP 339
E G +R++ +A EN +I+ ++++D A+ A D V +
Sbjct: 230 EFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIAT-----ARFDAQTGADREVQRI 284
Query: 340 VMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIH 396
+M L LN +DG + + +I TN D LDPA LRPGR+D I
Sbjct: 285 LMEL-----------LNQMDGFDQTVNVK--VIMATNRADTLDPALLRPGRLDRKIE 328
>sp|D2QZ34|FTSH_PIRSD ATP-dependent zinc metalloprotease FtsH OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=ftsH PE=3
SV=1
Length = 700
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 26/166 (15%)
Query: 238 FVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL------RG 291
F++ E Y+ +G +G LL GPPGTGK+ L A+A + L ++ G
Sbjct: 240 FLRSPEKYQKLGGRIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSDFVEMFVGVG 299
Query: 292 NMELRNLLIATENKS--ILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQV 349
+R++ E K+ I+ ++++D K++ +M + +
Sbjct: 300 AARVRDMFQQAEAKAPCIIFIDELDA-------LGKSRGAG---------IMGGHDEREQ 343
Query: 350 TLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHI 395
TL+ +L +DG S+ G I++ TN + LDPA LRPGR D H+
Sbjct: 344 TLNALLVEMDGFGSNSG--VIVMAATNRPETLDPALLRPGRFDRHV 387
>sp|P71408|FTSH_HELPY ATP-dependent zinc metalloprotease FtsH OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=ftsH PE=1 SV=2
Length = 632
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 33/223 (14%)
Query: 189 LKLFTLRYDRMH-GMRGDVW------QSVNLDHP-ATFDTLAMDSDMKQMIMDDLERFVK 240
L L+ +RM M G ++ + +N + P F+ +A + + K+ +++ ++ F+K
Sbjct: 132 LGLWMFMANRMQKNMGGGIFGMGSAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVD-FLK 190
Query: 241 RKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL------ELTNLRGNME 294
E Y N+G +G LL GPPGTGK+ L A+A + + + E+ G
Sbjct: 191 YPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASR 250
Query: 295 LRNLLIATENK--SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLS 352
+R+L + + SI+ +++ID K++A V++ N + TL+
Sbjct: 251 VRDLFETAKKQAPSIIFIDEIDA-------IGKSRAAGG--------VVSGNDEREQTLN 295
Query: 353 GMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHI 395
+L +DG S I++ TN + LDPA +RPGR D +
Sbjct: 296 QLLAEMDGFGSENAP-VIVLAATNRPEILDPALMRPGRFDRQV 337
>sp|Q8W585|FTSH8_ARATH ATP-dependent zinc metalloprotease FTSH 8, chloroplastic
OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1
Length = 685
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 88/189 (46%), Gaps = 27/189 (14%)
Query: 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
TFD +A + KQ M+ +E F+K+ E + VG +G LL GPPGTGK+ L A+A
Sbjct: 218 TFDDVAGVDEAKQDFMEVVE-FLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGE 276
Query: 277 LN---FDVYDLELTNL---RGNMELRNLL-IATENKSILV-VEDIDCSIELQDRFAKAKA 328
F + E + G +R+L A EN +V V++ID + +
Sbjct: 277 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA-------VGRQRG 329
Query: 329 TNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRP 388
T + N + TL+ +L +DG + G I++ TN D LD A LRP
Sbjct: 330 TG---------IGGGNDEREQTLNQLLTEMDGFEGNTG--VIVVAATNRADILDSALLRP 378
Query: 389 GRMDVHIHM 397
GR D + +
Sbjct: 379 GRFDRQVSV 387
>sp|O80860|FTSH2_ARATH ATP-dependent zinc metalloprotease FTSH 2, chloroplastic
OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1
Length = 695
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 88/189 (46%), Gaps = 27/189 (14%)
Query: 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
TFD +A + KQ M+ +E F+K+ E + VG +G LL GPPGTGK+ L A+A
Sbjct: 225 TFDDVAGVDEAKQDFMEVVE-FLKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGE 283
Query: 277 LN---FDVYDLELTNL---RGNMELRNLL-IATENKSILV-VEDIDCSIELQDRFAKAKA 328
F + E + G +R+L A EN +V V++ID + +
Sbjct: 284 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA-------VGRQRG 336
Query: 329 TNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRP 388
T + N + TL+ +L +DG + G I++ TN D LD A LRP
Sbjct: 337 TG---------IGGGNDEREQTLNQLLTEMDGFEGNTG--VIVVAATNRADILDSALLRP 385
Query: 389 GRMDVHIHM 397
GR D + +
Sbjct: 386 GRFDRQVSV 394
>sp|P73437|FTSH4_SYNY3 ATP-dependent zinc metalloprotease FtsH 4 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=ftsH4 PE=2 SV=1
Length = 628
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 21/185 (11%)
Query: 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
TFD +A + K + + ++ F+K + Y +G +G LL GPPGTGK+ L A A
Sbjct: 172 TFDDVAGVEEAKTELSEVVD-FLKFPQRYTALGAKIPKGVLLVGPPGTGKTLLAKAAAGE 230
Query: 277 LN---FDVYDLELTNL---RGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATN 330
F + E L G +R+L + ++ +V I+ D K++A+
Sbjct: 231 AGVPFFIISGSEFVELFVGAGAARVRDLFEQAKKQAPCIV-----FIDELDAIGKSRASG 285
Query: 331 AMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGR 390
A M N + TL+ +L +DG +S+ G I++ TN + LDPA LRPGR
Sbjct: 286 AF--------MGGNDEREQTLNQLLTEMDG-FSAAGATVIVLAATNRPETLDPALLRPGR 336
Query: 391 MDVHI 395
D +
Sbjct: 337 FDRQV 341
>sp|A6TSZ1|FTSH1_ALKMQ ATP-dependent zinc metalloprotease FtsH 1 OS=Alkaliphilus
metalliredigens (strain QYMF) GN=ftsH1 PE=3 SV=1
Length = 590
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 105/241 (43%), Gaps = 37/241 (15%)
Query: 166 VVMDSYIPHVLKQSKETSTQKKTLKLFTLRYDRMHGMRGDVWQSVNLDHPATFDTLAMDS 225
V++ +I + SK+ +TQ + YD+M DV S D F +A +
Sbjct: 112 VLIGGFIGVAIFLSKKNATQT------SKEYDKMS----DVEFSTQKDSSIRFADIAGNQ 161
Query: 226 DMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285
+ K+ M+ L F+K E Y G +G +LYG PGTGK+ L A+A+ + +
Sbjct: 162 EAKENAME-LVDFLKNPEKYSRYGAKMPKGVILYGSPGTGKTLLARALASEAGVEFLAVS 220
Query: 286 LTNL------RGNMELRNLLIATENKS--ILVVEDIDCSIELQDRFAKAKATNAMDLNVI 337
++ G +RNL ++K ++ +++ID + +DR + +
Sbjct: 221 GSDFVQVYAGLGAGRIRNLFKKAKDKGKCVIFIDEIDAIGKKRDRGGLGGSDES------ 274
Query: 338 QPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHM 397
TL+ +L + G S G I++ TN D LD A LRPGR D I +
Sbjct: 275 ----------DRTLNALLTEMSGFKGSEG--IIVMAATNRLDILDDALLRPGRFDRQIEI 322
Query: 398 S 398
Sbjct: 323 G 323
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1
Length = 387
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 26/177 (14%)
Query: 228 KQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELT 287
KQ I + +E + + + YR +G +G LLYGPPGTGK+ L+ A+AN+ + +
Sbjct: 143 KQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNGS 202
Query: 288 NL------RGNMELRNLLIATENK--SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQP 339
G +R++ K SI+ ++++D SI + RF A+ + D V
Sbjct: 203 EFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVD-SIATK-RF---DASTSADREV--- 254
Query: 340 VMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIH 396
Q L +LN +DG + + +I TN D +DPA LRPGR+D I
Sbjct: 255 --------QRVLIELLNQMDGFDPAANVK--VIMATNRADTIDPALLRPGRLDRKIE 301
>sp|Q25544|PRS8_NAEFO 26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2
SV=1
Length = 414
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 27/189 (14%)
Query: 216 ATFDTLA-MDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMA 274
AT++ + +D +K+ I + +E +K E + ++G A +G ++YGPPGTGK+ L A+A
Sbjct: 153 ATYEMVGGLDEQIKE-IKEVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTLLARAVA 211
Query: 275 NYLNFDVYDLELTNL------RGNMELRNLLI-ATENK-SILVVEDIDCSIELQDRFAKA 326
++ + + + L G+ +R L + A E+ SI+ +++ID + K
Sbjct: 212 HHTDCTFIRVSGSELVQKYIGEGSKMVRELFVMAREHAPSIIFMDEIDSIGSTRTEGGKG 271
Query: 327 KATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFL 386
+ + Q T+ +LN +DG S+ + II TN D LDPA L
Sbjct: 272 GGDSEV---------------QRTMLELLNQLDGFESTQNIK--IIMATNRIDILDPALL 314
Query: 387 RPGRMDVHI 395
RPGR+D I
Sbjct: 315 RPGRIDRKI 323
>sp|O74894|PRS6B_SCHPO 26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpt3 PE=3 SV=1
Length = 389
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 84/177 (47%), Gaps = 26/177 (14%)
Query: 228 KQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMAN--YLNF-DVYDL 284
KQ + + +E + + + YR +G RG LLYGPPGTGK+ L+ A+AN NF V
Sbjct: 143 KQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGS 202
Query: 285 ELTNL---RGNMELRNLL-IATENK-SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQP 339
E G +R++ +A EN +I+ +++ID A AT D
Sbjct: 203 EFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEID-----------AIATKRFDAQT--- 248
Query: 340 VMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIH 396
++ Q L +L +DG G +I TN D LDPA LRPGR+D I
Sbjct: 249 --GADREVQRILIELLTQMDGF--DQGANVKVIMATNRADTLDPALLRPGRLDRKIE 301
>sp|O32617|FTSH_HELFC ATP-dependent zinc metalloprotease FtsH OS=Helicobacter felis
(strain ATCC 49179 / NCTC 12436 / CS1) GN=ftsH PE=3 SV=1
Length = 638
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 27/206 (13%)
Query: 199 MHGMRGDVWQSVNLDHPAT-FDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYL 257
+ GM G + +N + P F+ +A + + K+ +++ ++ F+K + Y ++G +G L
Sbjct: 156 IFGM-GSSKKLINAEKPKVRFNDMAGNEEAKEEVVEIVD-FLKYPDRYASLGAKIPKGVL 213
Query: 258 LYGPPGTGKSSLIAAMANYLNFDVYDL------ELTNLRGNMELRNL--LIATENKSILV 309
L GPPGTGK+ L A+A + + + E+ G +R+L + E SI+
Sbjct: 214 LVGPPGTGKTLLAKAVAGEASVPFFSMGGSSFIEMFVGLGASRVRDLFDIAKKEAPSIIF 273
Query: 310 VEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDER 369
+++ID K++A M ++ N + TL+ +L +DG S
Sbjct: 274 IDEIDA-------IGKSRAAGGM--------ISGNDEREQTLNQLLAEMDGFGSENA-PV 317
Query: 370 IIIFTTNHKDRLDPAFLRPGRMDVHI 395
I++ TN + LDPA LRPGR D +
Sbjct: 318 IVLAATNRPEILDPALLRPGRFDRQV 343
>sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum
PE=2 SV=1
Length = 413
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 87/188 (46%), Gaps = 26/188 (13%)
Query: 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
T++ + KQ I + +E + E Y+ +G RG LLYGPPGTGK+ L A+A++
Sbjct: 158 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 217
Query: 277 LN---FDVYDLELTNL---RGNMELRNLL-IATEN-KSILVVEDIDCSIELQDRFAKAKA 328
V E G +R++ +A EN +I+ ++++D A+ A
Sbjct: 218 TTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIAT-----ARFDA 272
Query: 329 TNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRP 388
D V + +M L LN +DG + + +I TN D LDPA LRP
Sbjct: 273 QTGADREVQRILMEL-----------LNQMDGFDQTVNVK--VIMATNRADTLDPALLRP 319
Query: 389 GRMDVHIH 396
GR+D I
Sbjct: 320 GRLDRKIE 327
>sp|C8W731|FTSH_ATOPD ATP-dependent zinc metalloprotease FtsH OS=Atopobium parvulum
(strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546)
GN=ftsH PE=3 SV=1
Length = 644
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 28/191 (14%)
Query: 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAA 272
D TF +A + K+ M ++ F+K + Y+ +G RG LL GPPGTGK+ + A
Sbjct: 178 DTGITFKDVAGQEEAKES-MQEIVSFLKTPDKYKEIGARCPRGALLVGPPGTGKTLIAKA 236
Query: 273 MANYLN---FDVYDLELTNL---RGNMELRNLLIATENKS--ILVVEDIDCSIELQDRFA 324
+A F + E + RG ++R+L K+ I+ +++ID + +D
Sbjct: 237 VAGEAGVPFFQIAGSEFVEMFVGRGAAKVRDLFKQANEKAPCIIFIDEIDAVGKRRD--- 293
Query: 325 KAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPA 384
+N N + TL+ +L+ +DG + G +++ TN + LD A
Sbjct: 294 --------------ASLNSNDEREQTLNQLLSEMDGFDNHKG--IVVLAATNRPETLDKA 337
Query: 385 FLRPGRMDVHI 395
LRPGR D I
Sbjct: 338 LLRPGRFDRRI 348
>sp|Q3B6R3|FTSH_PELLD ATP-dependent zinc metalloprotease FtsH OS=Pelodictyon luteolum
(strain DSM 273) GN=ftsH PE=3 SV=1
Length = 706
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 28/195 (14%)
Query: 211 NLDHPA--TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSS 268
NLD TF +A + K +M+ ++ F+K + Y +G +G LL GPPGTGK+
Sbjct: 189 NLDEHTRITFKDVAGLDEAKAEVMEVVD-FLKDPKKYTRLGGKLPKGVLLVGPPGTGKTL 247
Query: 269 LIAAMANYLNFDVYDLELTNL------RGNMELRNLLIATENKS--ILVVEDIDCSIELQ 320
L A+A + + + ++ G +R+L + K+ I+ +++ID
Sbjct: 248 LAKAVAGEADVPFFSISGSDFVEMFVGVGAARVRDLFRQAKEKAPCIIFIDEIDA----- 302
Query: 321 DRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDR 380
+++ AM M N + TL+ +L +DG + G I++ TN D
Sbjct: 303 --VGRSRGKGAM--------MGGNDERENTLNQLLVEMDGFATDKG--VILMAATNRPDV 350
Query: 381 LDPAFLRPGRMDVHI 395
LDPA LRPGR D I
Sbjct: 351 LDPALLRPGRFDRQI 365
>sp|C7MC16|FTSH_BRAFD ATP-dependent zinc metalloprotease FtsH OS=Brachybacterium faecium
(strain ATCC 43885 / DSM 4810 / NCIB 9860) GN=ftsH PE=3
SV=1
Length = 704
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 81/174 (46%), Gaps = 26/174 (14%)
Query: 232 MDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL-- 289
+D++++F+ Y+ VG +G LLYGPPGTGK+ L A+A N Y + ++
Sbjct: 189 LDEIKQFLVDPGRYQAVGAKIPKGVLLYGPPGTGKTLLAKAVAGEANVPFYSISGSDFVE 248
Query: 290 ----RGNMELRNLL-IATENK-SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNL 343
G +R+L A EN +I+ +++ID R A D
Sbjct: 249 MFVGVGASRVRDLFNTAKENAPAIIFIDEIDAV----GRHRGAGMGGGHDER-------- 296
Query: 344 NQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHM 397
+ TL+ ML +DG + I+I TN D LDPA LRPGR D I +
Sbjct: 297 ----EQTLNQMLVEMDGFEEN--QNVILIAATNRVDILDPALLRPGRFDRQIGV 344
>sp|O14325|YB7A_SCHPO Uncharacterized AAA domain-containing protein C16E9.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16E9.10c PE=1 SV=1
Length = 779
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 31/163 (19%)
Query: 239 VKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMAN--YLNFDVYDLELTNLRGNMELR 296
+KR E Y++VG + G LL+GPPG GK+ L A+AN NF ++RG EL
Sbjct: 512 IKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKAVANESKANF-------ISIRGP-ELL 563
Query: 297 NLLIATENKSILVVEDIDCSIELQDRFAKAKATNAM-----DLNVIQPVMN--LNQVPQV 349
N + +++ V F +A+A++ +L+ + P + L++
Sbjct: 564 NKYVGESERAVRQV------------FLRARASSPCVIFFDELDAMVPRRDDSLSEASSR 611
Query: 350 TLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMD 392
++ +L +DGL G +I TN D +DPA LRPGR+D
Sbjct: 612 VVNTLLTELDGLSDRSG--VYVIAATNRPDIIDPAMLRPGRLD 652
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 25/168 (14%)
Query: 239 VKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE----LTNLRGNME 294
+K E Y+ G RG LL+GPPG GK+ L A+AN L + ++ + G E
Sbjct: 194 IKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLANALANELGVPFISISAPSIVSGMSGESE 253
Query: 295 LRNLLIATENKS----ILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVT 350
+ + E KS ++ +++ID + A M+ ++ + T
Sbjct: 254 KKVREVFEEAKSLAPCLMFIDEIDAVTP-----KRESAQREMERRIVAQFL--------T 300
Query: 351 LSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMS 398
L+F + G ++I TN D LD A R GR D I ++
Sbjct: 301 CMDELSF----EKTDGKPVLVIGATNRPDSLDSALRRAGRFDREICLT 344
>sp|Q8FTE3|ARC_COREF AAA ATPase forming ring-shaped complexes OS=Corynebacterium
efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM
11189 / NBRC 100395) GN=arc PE=3 SV=1
Length = 526
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 19/215 (8%)
Query: 226 DMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285
D ++I D +E E YR+ +G LLYGPPG GK+ + A+AN L+ + D
Sbjct: 220 DQIELIQDAVELPFLHPEMYRSYKLHPPKGVLLYGPPGCGKTLIAKAVANSLSQRIGDAG 279
Query: 286 LT---NLRGNMELRNLLIATENKSILVVEDIDCSIELQDR-----FAKAKATNAMDLNVI 337
+ N++G EL N + + I V+ + + R F + ++ + I
Sbjct: 280 TSYFINVKGP-ELLNKYVGETERQIRVIFERARELAGDGRPVIIFFDEMESIFRTRGSGI 338
Query: 338 QPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHM 397
M VPQ +L +DG+ I+I TN ++ +DPA LRPGR+D+ I +
Sbjct: 339 SSDMETTVVPQ-----LLAELDGVEDLS--NVIVIGATNREELIDPAILRPGRLDIKIRV 391
Query: 398 SYCTSCGFKMLASSYLGITEH-PLFLEVEGLIEKA 431
G + + + Y IT+ PL V+ LI+ A
Sbjct: 392 QRPNRSGARDIFARY--ITDAIPLAAPVDELIDTA 424
>sp|P46507|PRS6B_MANSE 26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1
Length = 415
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 86/187 (45%), Gaps = 27/187 (14%)
Query: 219 DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN 278
D MD+ KQ I + +E + E YR +G RG L+YGPPG GK+ L A+A++
Sbjct: 163 DIGGMDT-QKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHHTT 221
Query: 279 ---FDVYDLELTNL---RGNMELRNLL-IATENK-SILVVEDIDCSIELQDRFAKAKATN 330
V E G +R++ +A EN +I+ +++ID A AT
Sbjct: 222 AAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEID-----------AIATK 270
Query: 331 AMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGR 390
D ++ Q L +LN +DG + + +I TN D LDPA LRPGR
Sbjct: 271 RFDAQT-----GADREVQRILLELLNQMDGFDQTTNVK--VIMATNRADTLDPALLRPGR 323
Query: 391 MDVHIHM 397
+D I
Sbjct: 324 LDRKIEF 330
>sp|P34124|PRS8_DICDI 26S protease regulatory subunit 8 OS=Dictyostelium discoideum
GN=psmC5 PE=1 SV=2
Length = 403
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 92/198 (46%), Gaps = 27/198 (13%)
Query: 216 ATFDTLA-MDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMA 274
+T+D + +D +K+ I + +E +K E + ++G A +G LLYGPPGTGK+ L A+A
Sbjct: 142 STYDMVGGLDKQIKE-IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 200
Query: 275 NYLNFDVYDLELTNL------RGNMELRNLLIATENK--SILVVEDIDCSIELQDRFAKA 326
++ + + + L G+ +R L I SI+ +++ID +
Sbjct: 201 HHTDCTFIRVSGSELVQKYIGEGSRMVRELFIMAREHAPSIIFMDEIDSIGSSRGESGSG 260
Query: 327 KATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFL 386
+ + Q T+ +LN +DG S+ + ++ TN D LDPA L
Sbjct: 261 GGDSEV---------------QRTMLELLNQLDGFESTKNIK--VLMCTNRIDILDPALL 303
Query: 387 RPGRMDVHIHMSYCTSCG 404
RPGR+D I G
Sbjct: 304 RPGRIDRKIEFPNPGDAG 321
>sp|B8J992|FTSH_ANAD2 ATP-dependent zinc metalloprotease FtsH OS=Anaeromyxobacter
dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=ftsH PE=3
SV=1
Length = 706
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 89/192 (46%), Gaps = 29/192 (15%)
Query: 213 DHPATF-DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIA 271
D TF D +D ++++ ++ F+K E YR +G +G LL GPPGTGK+ L
Sbjct: 200 DTGVTFQDAAGIDEAVEEL--QEIVEFLKTPEKYRRLGGRIPKGVLLVGPPGTGKTLLAR 257
Query: 272 AMANYLNFDVYDL------ELTNLRGNMELRNLLIATENKS--ILVVEDIDCSIELQDRF 323
A A + L E+ G +R+L K+ I+ ++++D
Sbjct: 258 ATAGEAGVPFFSLSGSEFVEMFVGVGAARVRDLFAQATQKAPCIVFIDELD--------- 308
Query: 324 AKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDP 383
A K+ NA +M + + TL+ +L +DG + G II+ TN + LDP
Sbjct: 309 ALGKSRNAG-------IMGGHDEREQTLNQLLAEMDGFDARAG--LIIMGATNRPEILDP 359
Query: 384 AFLRPGRMDVHI 395
A LRPGR D +
Sbjct: 360 ALLRPGRFDRQV 371
>sp|D1C2C6|FTSH2_SPHTD ATP-dependent zinc metalloprotease FtsH 2 OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=ftsH2 PE=3
SV=1
Length = 652
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 35/187 (18%)
Query: 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
TFD +A ++K+ + D ++ +++ E +R +G RG LL GPPGTGK+ L A+A
Sbjct: 158 TFDDVAGAEEVKEEVADIVD-YLRDPERFRRLGARIPRGVLLTGPPGTGKTLLTRALAGE 216
Query: 277 LN---FDVYDLELTNLR---GNMELRNLL-IATENK-SILVVEDIDCSIELQDRFAKAKA 328
F V E L G +R L A EN +I+ +++ID + R + +
Sbjct: 217 ARASFFSVSGSEFVELYVGVGASRVRELFRKAKENAPAIIFIDEIDA---IGRRRGRMEQ 273
Query: 329 TNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDER---IIIFTTNHKDRLDPAF 385
++ D LNQ+ L +DG +ER +++ TN D LDPA
Sbjct: 274 SSEYD-------QTLNQI--------LVEMDGF-----EERTTVVVVAATNRVDILDPAL 313
Query: 386 LRPGRMD 392
LRPGR D
Sbjct: 314 LRPGRFD 320
>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1
SV=2
Length = 428
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 84/177 (47%), Gaps = 26/177 (14%)
Query: 228 KQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELT 287
KQ I + +E + + + Y +G RG LLYGPPGTGK+ L+ A+AN + +
Sbjct: 181 KQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240
Query: 288 NL------RGNMELRNLL-IATENK-SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQP 339
G +R++ +A EN SI+ ++++D SI + RF A D V
Sbjct: 241 EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVD-SIATK-RF---DAQTGSDREV--- 292
Query: 340 VMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIH 396
Q L +L +DG S + +I TN D LDPA LRPGR+D I
Sbjct: 293 --------QRILIELLTQMDGFDQSTNVK--VIMATNRADTLDPALLRPGRLDRKIE 339
>sp|Q8SQK0|PRS8_ENCCU 26S protease regulatory subunit 8 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPT6 PE=1 SV=1
Length = 453
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 86/182 (47%), Gaps = 27/182 (14%)
Query: 222 AMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV 281
+D +K+ I + +E +K E + N+G A +G LLYGPPGTGK+ L A+A++
Sbjct: 200 GLDEQIKE-IREVIELPIKHPELFENLGIAQPKGVLLYGPPGTGKTLLARAVAHHTQCKF 258
Query: 282 YDLELTNL------RGNMELRNLLIATENK--SILVVEDIDCSIELQDRFAKAKATNAMD 333
+ + L G+ +R L I SI+ +++ID SI + + D
Sbjct: 259 IRVSGSELVQKYIGEGSRLVRELFIMAREHAPSIIFMDEID-SIG----STRGDSNKGSD 313
Query: 334 LNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDV 393
V Q T+ +LN +DG S + +I TN D LDPA LR GR+D
Sbjct: 314 SEV-----------QRTMLELLNQLDGFESH--NNIKVIMATNRIDILDPALLRTGRIDR 360
Query: 394 HI 395
I
Sbjct: 361 KI 362
>sp|Q3A579|FTSH_PELCD ATP-dependent zinc metalloprotease FtsH OS=Pelobacter carbinolicus
(strain DSM 2380 / Gra Bd 1) GN=ftsH PE=3 SV=1
Length = 646
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 27/187 (14%)
Query: 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276
TF +A + KQ +M+ +E K+F R KA RG LL GPPGTGK+ + A+A
Sbjct: 174 TFADVAGLDEAKQELMEIIEFLRNPKKFMRLGAKA-PRGVLLVGPPGTGKTLMARAVAGE 232
Query: 277 LNFDVYDLELTNL------RGNMELRNLLI-ATENK-SILVVEDIDCSIELQDRFAKAKA 328
+ + + G +R+L A +N SI+ ++++D +++
Sbjct: 233 AEVPFFTISASQFIEMFVGVGASRVRDLFNNAKKNAPSIIFIDELDA-------VGRSRG 285
Query: 329 TNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRP 388
T + N + TL+ +L+ +DG DE I++ TN D LDPA LRP
Sbjct: 286 TG---------LGGGNDEREQTLNQLLSEMDGF--EAHDEVIVMSATNRPDVLDPALLRP 334
Query: 389 GRMDVHI 395
GR D +
Sbjct: 335 GRFDRQV 341
>sp|Q67T82|FTSH2_SYMTH ATP-dependent zinc metalloprotease FtsH 2 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH2 PE=3 SV=1
Length = 587
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 28/201 (13%)
Query: 213 DHPATF-DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIA 271
+ P TF D MD ++ +++ ++K + YR +G +G LLYGPPGTGK+ L
Sbjct: 146 ESPVTFADVAGMDEVKGEL--EEIVDYLKNPDKYRAIGARIPKGVLLYGPPGTGKTLLAR 203
Query: 272 AMANYLNFDVYDL------ELTNLRGNMELRNLLIATENKS--ILVVEDIDCSIELQDRF 323
A+A + L EL G +R L + I+ +++ID
Sbjct: 204 AVAGEAGVPFFALSGSSFVELFVGMGASRVRELFAQARKNAPCIVFIDEIDA-------V 256
Query: 324 AKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDP 383
+ + + A V+ + + TL+ +L +DG + G I++ TN D LD
Sbjct: 257 GRQRGSAA--------VVGGHDEREQTLNQLLTEMDGFGAYEG--VIVMAATNRPDVLDK 306
Query: 384 AFLRPGRMDVHIHMSYCTSCG 404
A LRPGR D I + + G
Sbjct: 307 ALLRPGRFDRQIPVGPPDAAG 327
>sp|O43933|PEX1_HUMAN Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1
Length = 1283
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 109/234 (46%), Gaps = 37/234 (15%)
Query: 179 SKETSTQKKTLKLFTLRYDR-MHGMRGDVWQSVNLDHP--ATFDTLAMDSDMKQMIMDDL 235
S+++ + ++ L L TL + + + G +SVNL P +D + +++Q++MD +
Sbjct: 797 SRQSISTREKLVLTTLDFQKALRGFLPASLRSVNLHKPRDLGWDKIGGLHEVRQILMDTI 856
Query: 236 ERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMA--NYLNFDVYDLELTNLRGNM 293
+ K E + N+ + G LLYGPPGTGK+ L +A + +NF +++G
Sbjct: 857 QLPAKYPELFANLPIRQRTGILLYGPPGTGKTLLAGVIARESRMNF-------ISVKGPE 909
Query: 294 ELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAM-----DLNVIQPVMNLNQ--V 346
L + A+E V DI F +A+A + I P + V
Sbjct: 910 LLSKYIGASEQ----AVRDI---------FIRAQAAKPCILFFDEFESIAPRRGHDNTGV 956
Query: 347 PQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYC 400
++ +L +DG+ G ++ T+ D +DPA LRPGR+D + YC
Sbjct: 957 TDRVVNQLLTQLDGVEGLQG--VYVLAATSRPDLIDPALLRPGRLDKCV---YC 1005
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,178,771
Number of Sequences: 539616
Number of extensions: 7028451
Number of successful extensions: 32818
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 249
Number of HSP's that attempted gapping in prelim test: 31282
Number of HSP's gapped (non-prelim): 1325
length of query: 490
length of database: 191,569,459
effective HSP length: 122
effective length of query: 368
effective length of database: 125,736,307
effective search space: 46270960976
effective search space used: 46270960976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)