Query 011254
Match_columns 490
No_of_seqs 395 out of 3016
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 23:18:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 3E-105 6E-110 808.9 37.4 436 13-468 2-440 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 4.6E-43 9.9E-48 345.3 18.4 235 212-464 144-394 (406)
3 KOG0730 AAA+-type ATPase [Post 100.0 4.3E-39 9.2E-44 337.7 18.8 211 213-444 428-647 (693)
4 KOG0734 AAA+-type ATPase conta 100.0 1.7E-38 3.8E-43 324.2 16.8 207 215-443 300-515 (752)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 3.2E-37 6.9E-42 319.3 18.9 209 214-443 506-727 (802)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 5.8E-36 1.2E-40 310.1 20.0 226 210-457 180-417 (802)
7 KOG0731 AAA+-type ATPase conta 100.0 6.1E-36 1.3E-40 322.6 19.2 213 213-443 305-527 (774)
8 KOG0727 26S proteasome regulat 100.0 6.9E-36 1.5E-40 281.5 15.7 214 213-444 149-371 (408)
9 KOG0736 Peroxisome assembly fa 100.0 6.1E-35 1.3E-39 309.0 16.4 210 214-442 667-888 (953)
10 PTZ00454 26S protease regulato 100.0 1.9E-33 4.2E-38 291.8 21.0 232 213-462 139-386 (398)
11 KOG0726 26S proteasome regulat 100.0 7.1E-35 1.5E-39 279.4 9.3 216 211-444 177-401 (440)
12 KOG0728 26S proteasome regulat 100.0 7.7E-34 1.7E-38 267.4 12.1 213 214-444 142-363 (404)
13 KOG0738 AAA+-type ATPase [Post 100.0 5.1E-33 1.1E-37 275.8 15.8 210 213-443 206-426 (491)
14 COG0465 HflB ATP-dependent Zn 100.0 3.7E-33 8E-38 296.5 15.4 233 213-464 144-399 (596)
15 KOG0652 26S proteasome regulat 100.0 6.9E-33 1.5E-37 262.3 13.9 215 211-443 163-386 (424)
16 PRK03992 proteasome-activating 100.0 1.5E-31 3.2E-36 278.5 20.5 235 212-464 124-374 (389)
17 KOG0735 AAA+-type ATPase [Post 100.0 9.5E-32 2.1E-36 282.5 18.7 233 205-463 651-894 (952)
18 TIGR03689 pup_AAA proteasome A 100.0 9.4E-32 2E-36 284.7 18.0 206 213-442 176-403 (512)
19 TIGR01241 FtsH_fam ATP-depende 100.0 1.9E-31 4.1E-36 286.4 19.9 231 213-462 49-295 (495)
20 PTZ00361 26 proteosome regulat 100.0 2E-31 4.3E-36 278.7 18.1 214 212-443 176-398 (438)
21 KOG0729 26S proteasome regulat 100.0 6.4E-32 1.4E-36 256.4 12.9 217 209-445 167-394 (435)
22 TIGR01243 CDC48 AAA family ATP 100.0 5.3E-31 1.1E-35 295.1 22.0 209 214-442 448-665 (733)
23 COG1223 Predicted ATPase (AAA+ 100.0 7.7E-31 1.7E-35 248.4 17.8 206 213-444 115-329 (368)
24 CHL00195 ycf46 Ycf46; Provisio 100.0 1.3E-30 2.8E-35 276.2 19.0 205 214-443 223-438 (489)
25 KOG0739 AAA+-type ATPase [Post 100.0 1.7E-31 3.6E-36 257.0 9.8 204 214-440 128-341 (439)
26 CHL00176 ftsH cell division pr 100.0 3.8E-30 8.1E-35 280.6 19.9 213 212-443 176-397 (638)
27 COG0464 SpoVK ATPases of the A 100.0 1.4E-29 3.1E-34 272.0 19.8 210 213-443 236-456 (494)
28 KOG0651 26S proteasome regulat 100.0 5.9E-30 1.3E-34 247.8 12.1 209 216-444 129-348 (388)
29 KOG0737 AAA+-type ATPase [Post 100.0 1.1E-29 2.4E-34 252.0 13.7 222 215-462 88-319 (386)
30 TIGR01242 26Sp45 26S proteasom 100.0 1.5E-28 3.2E-33 254.3 18.9 214 212-443 115-337 (364)
31 PLN00020 ribulose bisphosphate 100.0 1.7E-28 3.7E-33 246.1 17.5 198 213-432 109-329 (413)
32 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.6E-28 3.6E-33 281.2 17.9 177 241-442 1618-1850(2281)
33 PRK10733 hflB ATP-dependent me 100.0 7.5E-28 1.6E-32 264.9 19.5 211 214-443 147-366 (644)
34 PF14363 AAA_assoc: Domain ass 100.0 3.6E-28 7.7E-33 204.1 12.0 97 35-132 1-98 (98)
35 KOG0732 AAA+-type ATPase conta 99.9 2.4E-26 5.2E-31 254.3 16.4 212 210-442 256-482 (1080)
36 TIGR01243 CDC48 AAA family ATP 99.9 5E-26 1.1E-30 255.0 18.6 208 214-442 173-389 (733)
37 KOG0730 AAA+-type ATPase [Post 99.9 1.2E-25 2.6E-30 236.7 16.2 207 214-444 180-396 (693)
38 KOG0740 AAA+-type ATPase [Post 99.9 7.3E-26 1.6E-30 232.2 13.6 209 214-444 148-366 (428)
39 KOG0741 AAA+-type ATPase [Post 99.9 2.2E-25 4.8E-30 228.4 12.3 212 212-442 212-448 (744)
40 KOG0742 AAA+-type ATPase [Post 99.9 9.6E-23 2.1E-27 203.7 14.7 227 158-415 295-530 (630)
41 PF00004 AAA: ATPase family as 99.8 9.4E-21 2E-25 166.3 9.9 123 256-399 1-132 (132)
42 PF05496 RuvB_N: Holliday junc 99.8 8.4E-20 1.8E-24 172.9 14.9 190 213-442 18-222 (233)
43 KOG0744 AAA+-type ATPase [Post 99.8 6.7E-19 1.4E-23 172.1 10.6 178 218-414 141-341 (423)
44 TIGR02881 spore_V_K stage V sp 99.8 3.3E-17 7.1E-22 162.1 20.3 177 218-424 5-202 (261)
45 PRK00080 ruvB Holliday junctio 99.8 2.1E-17 4.5E-22 168.8 18.4 189 214-442 20-223 (328)
46 CHL00181 cbbX CbbX; Provisiona 99.8 1.1E-17 2.3E-22 167.5 14.7 175 219-422 23-218 (287)
47 TIGR02880 cbbX_cfxQ probable R 99.7 2.5E-17 5.4E-22 164.8 14.6 173 220-421 23-216 (284)
48 TIGR00635 ruvB Holliday juncti 99.7 9.4E-17 2E-21 162.1 17.0 183 217-439 2-199 (305)
49 COG2255 RuvB Holliday junction 99.7 2.7E-17 5.9E-22 158.8 11.9 199 214-438 21-220 (332)
50 TIGR00763 lon ATP-dependent pr 99.7 2.6E-16 5.6E-21 177.5 19.7 158 220-413 321-505 (775)
51 PF05673 DUF815: Protein of un 99.7 7.2E-16 1.6E-20 148.0 19.7 179 205-421 13-215 (249)
52 PRK14962 DNA polymerase III su 99.7 6.4E-16 1.4E-20 164.2 21.0 155 213-416 8-192 (472)
53 PRK04195 replication factor C 99.7 4.6E-16 9.9E-21 166.9 16.4 166 212-420 7-180 (482)
54 PRK07003 DNA polymerase III su 99.7 1.3E-15 2.8E-20 165.7 18.5 158 213-419 10-197 (830)
55 PRK12323 DNA polymerase III su 99.7 5E-16 1.1E-20 167.0 15.1 159 213-420 10-203 (700)
56 PRK14956 DNA polymerase III su 99.7 1.2E-15 2.5E-20 160.4 17.2 157 213-418 12-198 (484)
57 COG0466 Lon ATP-dependent Lon 99.7 2.3E-15 4.9E-20 160.9 16.9 158 221-414 325-509 (782)
58 PRK14960 DNA polymerase III su 99.7 2.4E-15 5.3E-20 162.1 17.1 159 213-420 9-197 (702)
59 PRK14961 DNA polymerase III su 99.6 6.3E-15 1.4E-19 152.6 18.3 159 213-420 10-198 (363)
60 PHA02544 44 clamp loader, smal 99.6 1.1E-14 2.3E-19 147.9 19.4 157 206-413 10-173 (316)
61 COG2256 MGS1 ATPase related to 99.6 6.2E-15 1.3E-19 148.8 16.5 151 214-414 19-177 (436)
62 PRK06645 DNA polymerase III su 99.6 7.9E-15 1.7E-19 156.6 18.2 157 213-418 15-205 (507)
63 PRK14964 DNA polymerase III su 99.6 7.2E-15 1.6E-19 155.9 17.1 159 213-420 7-195 (491)
64 PRK14958 DNA polymerase III su 99.6 6.8E-15 1.5E-19 157.9 16.4 157 213-418 10-196 (509)
65 TIGR02639 ClpA ATP-dependent C 99.6 6.4E-15 1.4E-19 165.4 16.3 158 214-414 177-359 (731)
66 KOG2004 Mitochondrial ATP-depe 99.6 1.5E-14 3.3E-19 153.9 17.3 162 220-414 412-597 (906)
67 PRK07994 DNA polymerase III su 99.6 1.8E-14 3.8E-19 157.2 18.0 156 213-417 10-195 (647)
68 PRK08691 DNA polymerase III su 99.6 1E-14 2.2E-19 158.5 16.1 159 213-420 10-198 (709)
69 PRK14949 DNA polymerase III su 99.6 1.9E-14 4.2E-19 159.4 18.2 156 213-417 10-195 (944)
70 TIGR02397 dnaX_nterm DNA polym 99.6 3.2E-14 6.8E-19 146.6 18.8 160 213-421 8-197 (355)
71 PRK05563 DNA polymerase III su 99.6 2.4E-14 5.1E-19 155.6 18.5 159 213-420 10-198 (559)
72 PLN03025 replication factor C 99.6 2E-14 4.3E-19 146.3 16.8 158 212-419 6-177 (319)
73 PRK14963 DNA polymerase III su 99.6 3.8E-14 8.3E-19 151.8 19.0 157 213-418 8-193 (504)
74 PRK13342 recombination factor 99.6 3.2E-14 6.9E-19 149.8 17.4 150 213-415 6-166 (413)
75 PRK14951 DNA polymerase III su 99.6 2.8E-14 6.1E-19 155.2 17.4 159 213-420 10-203 (618)
76 PRK07764 DNA polymerase III su 99.6 3.6E-14 7.9E-19 159.2 18.3 158 212-418 8-197 (824)
77 PRK07133 DNA polymerase III su 99.6 4E-14 8.6E-19 155.3 17.8 156 212-416 11-193 (725)
78 PRK07940 DNA polymerase III su 99.6 7.2E-14 1.6E-18 145.4 19.0 155 217-411 3-187 (394)
79 PRK05896 DNA polymerase III su 99.6 3.4E-14 7.4E-19 153.0 16.7 155 213-416 10-194 (605)
80 PRK14969 DNA polymerase III su 99.6 2.8E-14 6.1E-19 154.0 15.9 156 213-417 10-195 (527)
81 PRK14957 DNA polymerase III su 99.6 6.3E-14 1.4E-18 150.7 18.2 156 213-417 10-195 (546)
82 PRK14952 DNA polymerase III su 99.6 5.5E-14 1.2E-18 152.4 17.8 160 213-421 7-198 (584)
83 PRK06305 DNA polymerase III su 99.6 1.3E-13 2.8E-18 146.3 20.2 155 213-416 11-196 (451)
84 PRK14970 DNA polymerase III su 99.6 9.9E-14 2.1E-18 143.9 18.9 157 213-418 11-185 (367)
85 PRK06893 DNA replication initi 99.6 3.3E-14 7.1E-19 138.0 13.6 169 210-421 7-182 (229)
86 PRK14959 DNA polymerase III su 99.6 7.3E-14 1.6E-18 151.2 17.0 156 213-417 10-195 (624)
87 PRK14965 DNA polymerase III su 99.6 5.8E-14 1.3E-18 153.2 16.3 156 213-417 10-195 (576)
88 KOG0735 AAA+-type ATPase [Post 99.5 3.7E-14 8E-19 150.7 13.1 192 219-438 408-613 (952)
89 PRK14953 DNA polymerase III su 99.5 1.5E-13 3.3E-18 146.7 17.5 158 213-419 10-197 (486)
90 PRK10787 DNA-binding ATP-depen 99.5 1.9E-13 4E-18 153.5 18.3 158 220-414 323-507 (784)
91 TIGR02928 orc1/cdc6 family rep 99.5 1.2E-12 2.6E-17 135.4 22.8 199 216-463 12-255 (365)
92 TIGR03345 VI_ClpV1 type VI sec 99.5 2.6E-13 5.6E-18 153.9 19.2 157 214-414 182-364 (852)
93 PRK08451 DNA polymerase III su 99.5 2.9E-13 6.2E-18 145.0 18.5 159 213-420 8-196 (535)
94 PRK09111 DNA polymerase III su 99.5 2.4E-13 5.2E-18 148.1 18.1 159 213-420 18-211 (598)
95 PRK06647 DNA polymerase III su 99.5 2.2E-13 4.9E-18 147.7 17.6 156 213-417 10-195 (563)
96 TIGR02902 spore_lonB ATP-depen 99.5 1.4E-13 3.1E-18 148.9 16.0 182 213-440 59-303 (531)
97 PRK05342 clpX ATP-dependent pr 99.5 2.1E-13 4.5E-18 142.7 16.4 209 218-448 69-360 (412)
98 PRK14955 DNA polymerase III su 99.5 1.5E-13 3.3E-18 143.9 15.1 155 213-416 10-202 (397)
99 KOG0989 Replication factor C, 99.5 5.8E-14 1.3E-18 137.2 10.4 160 212-421 29-209 (346)
100 TIGR02640 gas_vesic_GvpN gas v 99.5 8.6E-13 1.9E-17 130.7 18.8 130 253-415 21-200 (262)
101 PRK14954 DNA polymerase III su 99.5 4.3E-13 9.4E-18 146.4 18.1 155 213-416 10-202 (620)
102 TIGR03420 DnaA_homol_Hda DnaA 99.5 3.1E-13 6.7E-18 130.2 15.1 167 211-423 7-182 (226)
103 PRK14948 DNA polymerase III su 99.5 5.8E-13 1.2E-17 146.0 18.5 154 213-415 10-195 (620)
104 PRK11034 clpA ATP-dependent Cl 99.5 2.4E-13 5.3E-18 151.5 15.8 155 217-414 184-363 (758)
105 PRK10865 protein disaggregatio 99.5 8.6E-13 1.9E-17 150.0 20.5 156 214-414 173-355 (857)
106 PRK12402 replication factor C 99.5 7.3E-13 1.6E-17 135.3 18.1 159 212-420 8-204 (337)
107 PRK11034 clpA ATP-dependent Cl 99.5 5.1E-13 1.1E-17 149.0 17.6 159 220-414 459-667 (758)
108 PRK14950 DNA polymerase III su 99.5 6.3E-13 1.4E-17 145.6 17.9 157 213-418 10-197 (585)
109 PTZ00112 origin recognition co 99.5 2.5E-12 5.4E-17 141.0 21.5 193 219-461 755-988 (1164)
110 COG2607 Predicted ATPase (AAA+ 99.5 2.9E-12 6.4E-17 121.4 19.2 208 206-460 47-278 (287)
111 TIGR00382 clpX endopeptidase C 99.5 6.1E-13 1.3E-17 138.6 15.9 220 220-461 78-379 (413)
112 KOG0736 Peroxisome assembly fa 99.5 4.8E-13 1E-17 143.6 15.3 170 252-444 430-608 (953)
113 PRK14971 DNA polymerase III su 99.5 1.1E-12 2.3E-17 143.9 18.2 158 213-419 11-199 (614)
114 TIGR03346 chaperone_ClpB ATP-d 99.5 1.2E-12 2.5E-17 149.3 18.2 157 214-414 168-350 (852)
115 PRK13341 recombination factor 99.5 4.5E-13 9.8E-18 148.8 14.4 152 213-414 22-182 (725)
116 TIGR00362 DnaA chromosomal rep 99.5 7.6E-13 1.6E-17 139.1 15.2 190 212-442 103-311 (405)
117 PRK08903 DnaA regulatory inact 99.5 1.6E-12 3.4E-17 125.9 16.2 164 210-423 9-180 (227)
118 PRK00149 dnaA chromosomal repl 99.5 5.8E-13 1.3E-17 141.8 14.3 192 211-442 114-323 (450)
119 PRK00411 cdc6 cell division co 99.4 6.8E-12 1.5E-16 131.2 20.5 159 216-414 27-221 (394)
120 PRK08727 hypothetical protein; 99.4 1.4E-12 3.1E-17 126.9 14.1 158 210-414 10-176 (233)
121 COG2812 DnaX DNA polymerase II 99.4 2.6E-12 5.6E-17 136.2 16.6 160 214-422 11-200 (515)
122 CHL00095 clpC Clp protease ATP 99.4 3.8E-12 8.2E-17 144.7 18.8 152 216-412 176-353 (821)
123 PRK00440 rfc replication facto 99.4 5.6E-12 1.2E-16 127.7 17.9 163 206-420 6-181 (319)
124 PRK08084 DNA replication initi 99.4 2.7E-12 5.9E-17 125.0 14.7 159 211-413 14-180 (235)
125 PRK07471 DNA polymerase III su 99.4 2.5E-11 5.5E-16 125.4 21.6 152 213-413 13-213 (365)
126 TIGR02639 ClpA ATP-dependent C 99.4 5.4E-12 1.2E-16 141.8 18.1 194 220-462 455-707 (731)
127 TIGR01650 PD_CobS cobaltochela 99.4 3.2E-12 7E-17 128.7 13.5 129 253-413 64-233 (327)
128 PRK05564 DNA polymerase III su 99.4 4.7E-11 1E-15 121.3 21.4 148 217-413 2-165 (313)
129 PRK09112 DNA polymerase III su 99.4 2.6E-11 5.7E-16 124.6 19.6 151 213-412 17-212 (351)
130 PRK14088 dnaA chromosomal repl 99.4 3.8E-12 8.2E-17 134.9 13.2 191 211-442 97-306 (440)
131 COG0464 SpoVK ATPases of the A 99.4 6.2E-12 1.3E-16 135.6 14.3 181 239-442 4-193 (494)
132 PRK05642 DNA replication initi 99.4 1.4E-11 3E-16 120.0 15.3 161 210-413 10-179 (234)
133 TIGR02903 spore_lon_C ATP-depe 99.4 1.9E-11 4E-16 134.5 18.0 194 213-429 148-382 (615)
134 PRK12422 chromosomal replicati 99.4 1.3E-11 2.8E-16 130.8 16.0 178 212-426 104-297 (445)
135 PRK14086 dnaA chromosomal repl 99.3 1.1E-11 2.5E-16 133.8 15.3 191 211-442 280-489 (617)
136 cd00009 AAA The AAA+ (ATPases 99.3 1.3E-11 2.9E-16 108.6 13.3 116 252-399 18-151 (151)
137 KOG2028 ATPase related to the 99.3 1.4E-11 3.1E-16 122.7 13.9 190 214-460 133-342 (554)
138 PRK13407 bchI magnesium chelat 99.3 1.1E-11 2.3E-16 126.3 12.4 156 214-414 3-217 (334)
139 PF07728 AAA_5: AAA domain (dy 99.3 2.3E-12 5E-17 114.9 6.6 105 255-391 1-139 (139)
140 COG1474 CDC6 Cdc6-related prot 99.3 1.4E-10 3.1E-15 119.7 20.5 214 219-483 17-266 (366)
141 PF00308 Bac_DnaA: Bacterial d 99.3 3.6E-11 7.7E-16 116.0 14.5 174 214-427 3-193 (219)
142 PRK05201 hslU ATP-dependent pr 99.3 1.5E-11 3.2E-16 127.0 11.8 70 220-289 16-86 (443)
143 TIGR00390 hslU ATP-dependent p 99.3 2.1E-11 4.7E-16 125.8 12.8 70 220-289 13-83 (441)
144 PRK06620 hypothetical protein; 99.3 2.6E-11 5.6E-16 116.5 12.3 149 212-415 9-162 (214)
145 CHL00081 chlI Mg-protoporyphyr 99.3 1.9E-11 4.1E-16 124.9 11.7 155 215-414 13-233 (350)
146 PHA02244 ATPase-like protein 99.3 3.5E-11 7.5E-16 122.6 13.2 118 253-404 119-265 (383)
147 COG0542 clpA ATP-binding subun 99.3 7.2E-11 1.6E-15 129.9 16.4 197 219-463 491-751 (786)
148 PRK10865 protein disaggregatio 99.3 8.1E-11 1.8E-15 134.0 17.5 157 218-414 567-780 (857)
149 KOG1969 DNA replication checkp 99.3 9.1E-11 2E-15 125.8 16.7 173 206-414 260-482 (877)
150 COG0714 MoxR-like ATPases [Gen 99.3 1.6E-10 3.5E-15 118.2 17.9 130 253-414 43-204 (329)
151 TIGR00678 holB DNA polymerase 99.3 1.1E-10 2.5E-15 109.5 14.7 125 251-412 12-167 (188)
152 CHL00095 clpC Clp protease ATP 99.2 1.5E-10 3.3E-15 131.7 17.3 195 219-461 509-776 (821)
153 TIGR03346 chaperone_ClpB ATP-d 99.2 2.4E-10 5.2E-15 130.5 18.4 156 219-414 565-777 (852)
154 PRK14087 dnaA chromosomal repl 99.2 1.5E-10 3.2E-15 123.0 14.5 187 215-442 111-320 (450)
155 PRK07399 DNA polymerase III su 99.2 1.1E-09 2.4E-14 111.0 19.9 174 217-442 2-222 (314)
156 TIGR03345 VI_ClpV1 type VI sec 99.2 3.1E-10 6.7E-15 129.0 17.3 156 219-414 566-781 (852)
157 TIGR02030 BchI-ChlI magnesium 99.2 1.8E-10 4E-15 117.5 14.0 153 217-414 2-220 (337)
158 PRK09087 hypothetical protein; 99.2 1.6E-10 3.5E-15 111.9 12.2 160 211-425 13-178 (226)
159 PRK08058 DNA polymerase III su 99.2 1.2E-09 2.6E-14 111.7 19.1 146 217-411 3-180 (329)
160 PRK07952 DNA replication prote 99.2 1.8E-10 3.9E-15 112.5 10.6 98 212-316 65-174 (244)
161 PRK05707 DNA polymerase III su 99.1 2.1E-09 4.6E-14 109.6 18.6 125 251-412 20-177 (328)
162 PRK11331 5-methylcytosine-spec 99.1 4.4E-10 9.6E-15 117.4 13.2 150 218-399 174-357 (459)
163 PRK08116 hypothetical protein; 99.1 4.2E-10 9.2E-15 111.7 12.0 149 216-402 82-251 (268)
164 TIGR00602 rad24 checkpoint pro 99.1 1.2E-09 2.6E-14 119.6 16.0 203 206-459 73-328 (637)
165 PF07724 AAA_2: AAA domain (Cd 99.1 1.7E-10 3.7E-15 106.9 7.4 108 253-379 3-131 (171)
166 PF01078 Mg_chelatase: Magnesi 99.1 3.5E-10 7.6E-15 106.8 9.2 45 218-277 2-46 (206)
167 smart00382 AAA ATPases associa 99.1 5.6E-10 1.2E-14 97.1 9.3 66 253-318 2-92 (148)
168 PRK06964 DNA polymerase III su 99.1 1.2E-08 2.6E-13 104.4 19.6 124 251-411 19-202 (342)
169 PF07726 AAA_3: ATPase family 99.0 1.5E-10 3.4E-15 100.8 4.5 104 256-391 2-129 (131)
170 smart00763 AAA_PrkA PrkA AAA d 99.0 5.8E-09 1.3E-13 106.4 16.5 64 216-286 47-118 (361)
171 COG0470 HolB ATPase involved i 99.0 2.5E-09 5.4E-14 108.4 14.0 118 253-407 24-175 (325)
172 PF13177 DNA_pol3_delta2: DNA 99.0 4.7E-09 1E-13 96.5 14.3 113 251-400 17-161 (162)
173 TIGR02442 Cob-chelat-sub cobal 99.0 8.6E-10 1.9E-14 122.1 10.7 152 217-413 2-214 (633)
174 PRK08939 primosomal protein Dn 99.0 7.7E-10 1.7E-14 111.8 9.5 97 215-316 123-229 (306)
175 PRK12377 putative replication 99.0 1.5E-09 3.3E-14 106.2 11.3 95 215-316 70-175 (248)
176 PRK13531 regulatory ATPase Rav 99.0 3.8E-09 8.3E-14 111.3 13.9 128 253-412 39-193 (498)
177 smart00350 MCM minichromosome 99.0 2.8E-09 6.1E-14 115.2 12.9 128 255-414 238-401 (509)
178 PRK08181 transposase; Validate 99.0 1.2E-09 2.6E-14 108.2 9.0 64 253-316 106-179 (269)
179 COG1219 ClpX ATP-dependent pro 99.0 1.3E-08 2.9E-13 100.3 14.2 66 253-318 97-176 (408)
180 COG1224 TIP49 DNA helicase TIP 98.9 3.4E-08 7.3E-13 98.9 16.5 64 218-289 38-103 (450)
181 PRK04132 replication factor C 98.9 1.9E-08 4.1E-13 113.0 15.4 124 256-416 567-705 (846)
182 PF03215 Rad17: Rad17 cell cyc 98.9 3.3E-08 7.2E-13 106.4 16.3 210 204-460 6-269 (519)
183 PF06068 TIP49: TIP49 C-termin 98.9 3.9E-08 8.4E-13 99.7 15.7 65 217-289 22-88 (398)
184 PRK06871 DNA polymerase III su 98.9 1.7E-07 3.7E-12 95.2 20.3 125 251-412 22-178 (325)
185 KOG0741 AAA+-type ATPase [Post 98.9 2.2E-08 4.7E-13 104.4 13.5 134 254-410 539-683 (744)
186 PRK06090 DNA polymerase III su 98.9 1.9E-07 4E-12 94.8 20.0 124 251-411 23-178 (319)
187 KOG0991 Replication factor C, 98.9 1.4E-08 3E-13 96.3 10.9 190 210-462 18-222 (333)
188 TIGR02031 BchD-ChlD magnesium 98.9 1.5E-08 3.3E-13 111.1 12.0 128 254-413 17-174 (589)
189 PRK07993 DNA polymerase III su 98.8 1.1E-07 2.4E-12 97.3 17.5 124 251-411 22-178 (334)
190 PRK08769 DNA polymerase III su 98.8 1.6E-07 3.6E-12 95.2 18.0 124 251-411 24-183 (319)
191 COG0593 DnaA ATPase involved i 98.8 6.1E-08 1.3E-12 100.5 14.6 176 211-427 79-271 (408)
192 PF12775 AAA_7: P-loop contain 98.8 1.6E-08 3.5E-13 100.6 9.9 134 253-414 33-194 (272)
193 PRK06526 transposase; Provisio 98.8 5.9E-09 1.3E-13 102.7 6.3 64 253-316 98-171 (254)
194 PRK11608 pspF phage shock prot 98.8 5.9E-08 1.3E-12 99.2 13.1 152 218-413 5-194 (326)
195 PF01695 IstB_IS21: IstB-like 98.8 5.3E-09 1.1E-13 97.6 4.6 63 253-315 47-119 (178)
196 PRK08699 DNA polymerase III su 98.8 5.2E-08 1.1E-12 99.4 12.2 123 251-410 19-182 (325)
197 COG0542 clpA ATP-binding subun 98.8 1.8E-07 4E-12 103.4 17.2 151 217-410 168-343 (786)
198 TIGR01817 nifA Nif-specific re 98.8 6.2E-08 1.3E-12 105.6 13.5 156 215-414 192-385 (534)
199 PF00158 Sigma54_activat: Sigm 98.8 3.4E-08 7.3E-13 91.3 9.4 86 221-317 1-106 (168)
200 PRK11388 DNA-binding transcrip 98.8 9.5E-08 2.1E-12 106.4 14.9 90 216-316 322-428 (638)
201 KOG0745 Putative ATP-dependent 98.8 2.6E-08 5.6E-13 101.7 9.3 65 253-317 226-304 (564)
202 TIGR02974 phageshock_pspF psp 98.8 7.6E-08 1.7E-12 98.4 12.9 168 222-433 2-215 (329)
203 PRK06835 DNA replication prote 98.8 4.7E-08 1E-12 99.7 11.3 63 254-316 184-258 (329)
204 COG1484 DnaC DNA replication p 98.7 6.1E-08 1.3E-12 95.6 11.0 92 217-316 77-179 (254)
205 KOG1942 DNA helicase, TBP-inte 98.7 4.2E-07 9.1E-12 88.9 16.0 71 369-442 326-420 (456)
206 PRK06921 hypothetical protein; 98.7 8.7E-08 1.9E-12 95.1 11.1 63 253-315 117-188 (266)
207 PRK10820 DNA-binding transcrip 98.7 3.6E-07 7.8E-12 99.2 16.1 92 214-317 199-311 (520)
208 TIGR00368 Mg chelatase-related 98.7 9.1E-08 2E-12 102.7 10.2 47 216-277 189-235 (499)
209 PRK09183 transposase/IS protei 98.6 7E-08 1.5E-12 95.4 7.5 64 253-316 102-176 (259)
210 PF00910 RNA_helicase: RNA hel 98.6 5.1E-08 1.1E-12 83.2 5.2 61 256-316 1-61 (107)
211 PRK09862 putative ATP-dependen 98.6 1.3E-07 2.9E-12 101.2 9.4 140 217-403 189-391 (506)
212 COG1239 ChlI Mg-chelatase subu 98.6 2.9E-07 6.2E-12 94.7 11.3 156 215-415 13-234 (423)
213 TIGR03015 pepcterm_ATPase puta 98.6 4E-07 8.6E-12 90.0 12.0 126 255-414 45-206 (269)
214 PF12774 AAA_6: Hydrolytic ATP 98.6 5.8E-07 1.3E-11 87.3 12.7 65 252-316 31-96 (231)
215 PF01637 Arch_ATPase: Archaeal 98.6 3.4E-07 7.3E-12 87.6 10.8 157 253-440 20-233 (234)
216 COG1220 HslU ATP-dependent pro 98.6 6.9E-07 1.5E-11 89.0 12.7 69 221-289 17-86 (444)
217 TIGR02329 propionate_PrpR prop 98.6 3.3E-07 7.1E-12 99.2 11.4 92 213-316 206-319 (526)
218 PRK15424 propionate catabolism 98.5 5.5E-07 1.2E-11 97.4 12.2 89 216-316 216-334 (538)
219 PF14532 Sigma54_activ_2: Sigm 98.5 1.6E-07 3.5E-12 83.7 6.5 76 225-317 4-82 (138)
220 PHA02624 large T antigen; Prov 98.5 3.8E-07 8.1E-12 98.1 10.2 125 249-399 427-561 (647)
221 PF13173 AAA_14: AAA domain 98.5 5.5E-07 1.2E-11 79.2 9.5 63 254-316 3-73 (128)
222 PRK05917 DNA polymerase III su 98.5 8.8E-06 1.9E-10 81.3 19.0 113 251-400 17-154 (290)
223 PRK05818 DNA polymerase III su 98.5 3.6E-06 7.8E-11 82.5 15.8 113 251-400 5-147 (261)
224 COG0606 Predicted ATPase with 98.5 1.4E-07 3E-12 98.3 5.9 48 215-277 175-222 (490)
225 PRK15429 formate hydrogenlyase 98.5 1.3E-06 2.8E-11 98.1 13.5 89 216-316 373-482 (686)
226 TIGR00764 lon_rel lon-related 98.4 2E-06 4.4E-11 94.7 13.8 50 216-280 15-64 (608)
227 KOG1051 Chaperone HSP104 and r 98.4 7E-06 1.5E-10 92.3 17.5 122 220-377 563-710 (898)
228 PTZ00111 DNA replication licen 98.4 1.1E-06 2.4E-11 98.7 10.6 127 255-413 494-657 (915)
229 PRK07276 DNA polymerase III su 98.4 2.1E-05 4.6E-10 78.7 18.6 120 251-410 22-172 (290)
230 PF13401 AAA_22: AAA domain; P 98.4 1.1E-06 2.4E-11 76.8 8.5 38 253-290 4-49 (131)
231 KOG1514 Origin recognition com 98.4 7.9E-06 1.7E-10 88.4 16.3 171 255-467 424-633 (767)
232 COG1221 PspF Transcriptional r 98.4 1.7E-06 3.6E-11 89.7 10.6 159 215-415 74-266 (403)
233 KOG1970 Checkpoint RAD17-RFC c 98.4 8.9E-06 1.9E-10 85.8 15.9 74 204-285 69-142 (634)
234 PRK07132 DNA polymerase III su 98.4 3.7E-05 8E-10 77.5 20.0 122 251-410 16-159 (299)
235 PRK05022 anaerobic nitric oxid 98.4 1.8E-06 4E-11 93.5 11.1 89 217-317 185-294 (509)
236 KOG0990 Replication factor C, 98.4 2.7E-06 5.9E-11 84.4 11.1 159 211-419 33-209 (360)
237 KOG2035 Replication factor C, 98.4 4.7E-06 1E-10 81.2 12.0 163 212-424 6-210 (351)
238 PF03969 AFG1_ATPase: AFG1-lik 98.3 1E-06 2.2E-11 91.0 7.5 96 250-378 59-168 (362)
239 PF05729 NACHT: NACHT domain 98.3 5.3E-06 1.1E-10 75.1 11.0 131 254-414 1-164 (166)
240 PRK10923 glnG nitrogen regulat 98.3 1.3E-05 2.8E-10 86.0 14.3 172 218-433 137-353 (469)
241 KOG1968 Replication factor C, 98.2 5.7E-06 1.2E-10 93.5 10.8 173 212-420 313-509 (871)
242 KOG0478 DNA replication licens 98.2 8.7E-06 1.9E-10 87.7 11.5 161 220-414 430-627 (804)
243 COG3829 RocR Transcriptional r 98.2 1.8E-05 4E-10 83.8 13.6 93 212-316 238-352 (560)
244 TIGR02915 PEP_resp_reg putativ 98.2 2.3E-05 5E-10 83.4 14.6 88 218-317 138-246 (445)
245 cd01120 RecA-like_NTPases RecA 98.2 2E-05 4.4E-10 70.8 12.0 30 256-285 2-34 (165)
246 PLN03210 Resistant to P. syrin 98.2 2.4E-05 5.3E-10 92.8 15.1 62 207-279 172-233 (1153)
247 TIGR01818 ntrC nitrogen regula 98.1 2.7E-05 5.8E-10 83.3 13.8 171 219-433 134-349 (463)
248 PHA02774 E1; Provisional 98.1 1.8E-05 3.9E-10 85.1 12.1 58 249-313 430-488 (613)
249 KOG2227 Pre-initiation complex 98.1 4.6E-05 9.9E-10 79.3 14.6 197 216-462 147-379 (529)
250 PRK13406 bchD magnesium chelat 98.1 1.1E-05 2.4E-10 88.2 10.3 119 254-404 26-173 (584)
251 PF00931 NB-ARC: NB-ARC domain 98.1 4.9E-05 1.1E-09 75.7 13.8 147 252-438 18-199 (287)
252 PHA00729 NTP-binding motif con 98.1 5.9E-06 1.3E-10 79.5 6.1 27 255-281 19-45 (226)
253 PRK11361 acetoacetate metaboli 98.1 2.2E-05 4.8E-10 83.7 11.0 64 253-317 166-250 (457)
254 COG5271 MDN1 AAA ATPase contai 98.0 3.3E-05 7.2E-10 89.4 12.0 127 253-415 1543-1705(4600)
255 PF05621 TniB: Bacterial TniB 98.0 7E-05 1.5E-09 74.8 13.0 155 223-414 38-228 (302)
256 TIGR01618 phage_P_loop phage n 98.0 2.3E-05 5.1E-10 75.4 8.1 63 254-318 13-95 (220)
257 PF13207 AAA_17: AAA domain; P 97.9 6E-06 1.3E-10 71.3 3.4 31 256-286 2-32 (121)
258 PRK15115 response regulator Gl 97.9 4.9E-05 1.1E-09 80.8 10.4 64 253-317 157-241 (444)
259 KOG2170 ATPase of the AAA+ sup 97.9 3E-05 6.4E-10 76.6 7.8 91 220-316 83-190 (344)
260 PRK15455 PrkA family serine pr 97.9 1.7E-05 3.6E-10 85.3 6.4 67 213-286 70-137 (644)
261 TIGR02237 recomb_radB DNA repa 97.9 7.8E-05 1.7E-09 71.0 10.2 40 249-288 8-50 (209)
262 PF05707 Zot: Zonular occluden 97.9 3.6E-05 7.9E-10 72.7 7.7 114 256-400 3-146 (193)
263 COG5245 DYN1 Dynein, heavy cha 97.9 6.7E-05 1.5E-09 86.4 10.5 139 251-414 1492-1659(3164)
264 PRK10365 transcriptional regul 97.8 0.00013 2.8E-09 77.4 11.9 64 253-317 162-246 (441)
265 PRK07261 topology modulation p 97.8 3.6E-05 7.8E-10 71.3 6.6 31 256-286 3-33 (171)
266 PRK00131 aroK shikimate kinase 97.8 1.6E-05 3.5E-10 72.9 4.1 34 252-285 3-36 (175)
267 PF00493 MCM: MCM2/3/5 family 97.8 1.1E-05 2.3E-10 82.8 3.2 129 255-415 59-223 (331)
268 TIGR02688 conserved hypothetic 97.8 0.00021 4.5E-09 74.6 12.2 60 253-316 209-272 (449)
269 PRK08118 topology modulation p 97.8 4.6E-05 1E-09 70.4 6.0 32 255-286 3-34 (167)
270 PRK14722 flhF flagellar biosyn 97.8 7.2E-05 1.6E-09 77.4 8.0 103 253-385 137-266 (374)
271 COG2204 AtoC Response regulato 97.7 0.00011 2.3E-09 77.8 8.9 89 217-316 139-247 (464)
272 COG1116 TauB ABC-type nitrate/ 97.7 0.00014 3E-09 70.5 8.9 22 256-277 32-53 (248)
273 COG1241 MCM2 Predicted ATPase 97.7 8.7E-05 1.9E-09 81.8 8.2 135 256-414 322-484 (682)
274 COG1618 Predicted nucleotide k 97.7 0.00015 3.3E-09 65.6 8.1 24 254-277 6-29 (179)
275 KOG2680 DNA helicase TIP49, TB 97.7 0.00058 1.2E-08 67.6 12.5 57 370-429 319-387 (454)
276 cd01394 radB RadB. The archaea 97.7 0.00025 5.5E-09 67.9 10.0 38 249-286 15-55 (218)
277 PF06309 Torsin: Torsin; Inte 97.7 5.6E-05 1.2E-09 66.0 4.7 53 219-277 25-77 (127)
278 cd01124 KaiC KaiC is a circadi 97.6 0.0004 8.6E-09 64.5 10.7 30 256-285 2-34 (187)
279 PRK12723 flagellar biosynthesi 97.6 0.00053 1.2E-08 71.6 12.6 26 252-277 173-198 (388)
280 PF10443 RNA12: RNA12 protein; 97.6 0.0012 2.6E-08 68.9 14.6 86 371-458 186-298 (431)
281 PRK06067 flagellar accessory p 97.6 0.00032 6.9E-09 68.1 10.0 38 249-286 21-61 (234)
282 PF13604 AAA_30: AAA domain; P 97.6 0.00056 1.2E-08 64.8 11.2 35 254-288 19-56 (196)
283 PRK05800 cobU adenosylcobinami 97.6 0.00037 8.1E-09 64.5 9.7 62 256-317 4-89 (170)
284 PRK03839 putative kinase; Prov 97.6 5E-05 1.1E-09 70.7 3.6 30 256-285 3-32 (180)
285 cd00464 SK Shikimate kinase (S 97.6 5.6E-05 1.2E-09 67.9 3.9 30 256-285 2-31 (154)
286 PF14516 AAA_35: AAA-like doma 97.6 0.003 6.6E-08 64.8 16.9 37 253-289 31-70 (331)
287 PRK09361 radB DNA repair and r 97.6 0.00028 6E-09 68.1 8.8 39 249-287 19-60 (225)
288 PRK13947 shikimate kinase; Pro 97.6 5.9E-05 1.3E-09 69.3 3.8 32 255-286 3-34 (171)
289 PF13671 AAA_33: AAA domain; P 97.6 3.8E-05 8.2E-10 68.2 2.4 28 256-283 2-29 (143)
290 COG1373 Predicted ATPase (AAA+ 97.6 0.00077 1.7E-08 70.9 12.5 130 249-416 34-183 (398)
291 PF08740 BCS1_N: BCS1 N termin 97.6 0.0049 1.1E-07 57.7 16.7 138 59-221 27-187 (187)
292 PRK00625 shikimate kinase; Pro 97.5 6.3E-05 1.4E-09 69.9 3.7 31 255-285 2-32 (173)
293 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00039 8.6E-09 66.7 9.1 64 253-316 29-120 (213)
294 PF05272 VirE: Virulence-assoc 97.5 0.00022 4.8E-09 67.7 7.2 61 249-317 48-108 (198)
295 PRK13949 shikimate kinase; Pro 97.5 6.8E-05 1.5E-09 69.3 3.6 31 255-285 3-33 (169)
296 cd03283 ABC_MutS-like MutS-lik 97.5 0.00028 6E-09 67.1 7.8 63 253-315 25-116 (199)
297 PRK08533 flagellar accessory p 97.5 0.00055 1.2E-08 66.5 10.0 37 249-285 20-59 (230)
298 COG0703 AroK Shikimate kinase 97.5 7.4E-05 1.6E-09 68.8 3.2 33 254-286 3-35 (172)
299 COG3604 FhlA Transcriptional r 97.5 0.00025 5.5E-09 74.5 7.4 91 215-316 219-329 (550)
300 cd00544 CobU Adenosylcobinamid 97.5 0.0008 1.7E-08 62.3 9.9 63 256-318 2-87 (169)
301 COG1485 Predicted ATPase [Gene 97.5 0.0002 4.2E-09 72.5 6.1 94 251-377 63-170 (367)
302 PRK00771 signal recognition pa 97.4 0.00096 2.1E-08 70.7 11.3 38 252-289 94-134 (437)
303 TIGR02012 tigrfam_recA protein 97.4 0.00041 9E-09 70.5 8.2 70 249-318 51-147 (321)
304 PRK00409 recombination and DNA 97.4 0.0011 2.3E-08 75.5 12.3 64 253-316 327-419 (782)
305 PRK05973 replicative DNA helic 97.4 0.00085 1.8E-08 65.4 10.0 38 249-286 60-100 (237)
306 TIGR01069 mutS2 MutS2 family p 97.4 0.00092 2E-08 75.8 11.8 63 254-316 323-414 (771)
307 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.0008 1.7E-08 65.1 9.9 28 249-276 15-42 (235)
308 PF03266 NTPase_1: NTPase; In 97.4 0.00031 6.7E-09 64.9 6.6 22 256-277 2-23 (168)
309 PRK13948 shikimate kinase; Pro 97.4 0.00014 3E-09 68.2 4.3 34 252-285 9-42 (182)
310 cd01393 recA_like RecA is a b 97.4 0.0006 1.3E-08 65.6 8.8 40 249-288 15-63 (226)
311 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00012 2.7E-09 67.9 3.7 29 256-284 2-30 (183)
312 PRK14532 adenylate kinase; Pro 97.4 0.00013 2.8E-09 68.3 3.7 29 256-284 3-31 (188)
313 PRK06217 hypothetical protein; 97.4 0.00014 3E-09 68.0 3.9 30 256-285 4-33 (183)
314 PRK13765 ATP-dependent proteas 97.4 0.00031 6.6E-09 77.7 7.1 51 214-279 26-76 (637)
315 PRK12608 transcription termina 97.4 0.002 4.4E-08 66.5 12.6 23 256-278 136-158 (380)
316 cd02021 GntK Gluconate kinase 97.4 0.00014 3E-09 65.4 3.6 29 256-284 2-30 (150)
317 COG4619 ABC-type uncharacteriz 97.4 0.00053 1.1E-08 62.7 7.2 23 255-277 31-53 (223)
318 TIGR01313 therm_gnt_kin carboh 97.4 0.00014 3E-09 66.4 3.6 28 256-283 1-28 (163)
319 cd02020 CMPK Cytidine monophos 97.4 0.00014 3.1E-09 64.6 3.6 30 256-285 2-31 (147)
320 PRK14531 adenylate kinase; Pro 97.4 0.00016 3.5E-09 67.6 4.0 31 254-284 3-33 (183)
321 TIGR03499 FlhF flagellar biosy 97.4 0.00074 1.6E-08 67.7 9.0 36 253-288 194-234 (282)
322 KOG2228 Origin recognition com 97.4 0.0015 3.3E-08 65.7 10.9 156 220-416 25-222 (408)
323 PTZ00202 tuzin; Provisional 97.4 0.011 2.5E-07 62.0 17.6 77 215-303 258-334 (550)
324 PF13191 AAA_16: AAA ATPase do 97.4 0.00011 2.5E-09 67.8 2.9 37 253-289 24-63 (185)
325 PRK09376 rho transcription ter 97.3 0.0016 3.4E-08 67.6 11.1 24 256-279 172-195 (416)
326 PRK13946 shikimate kinase; Pro 97.3 0.00017 3.6E-09 67.6 3.6 34 253-286 10-43 (184)
327 cd00267 ABC_ATPase ABC (ATP-bi 97.3 0.00084 1.8E-08 60.9 8.1 26 253-278 25-50 (157)
328 PRK14737 gmk guanylate kinase; 97.3 0.00053 1.2E-08 64.4 6.8 27 251-277 2-28 (186)
329 cd01428 ADK Adenylate kinase ( 97.3 0.00019 4.1E-09 67.1 3.7 29 256-284 2-30 (194)
330 PRK05057 aroK shikimate kinase 97.3 0.00022 4.7E-09 66.2 4.0 34 253-286 4-37 (172)
331 PRK11823 DNA repair protein Ra 97.3 0.00043 9.3E-09 73.8 6.6 69 249-317 76-169 (446)
332 PRK08154 anaerobic benzoate ca 97.3 0.00043 9.4E-09 70.3 6.4 58 223-285 108-165 (309)
333 PF00437 T2SE: Type II/IV secr 97.3 0.00067 1.4E-08 67.3 7.2 90 214-314 99-207 (270)
334 PRK03731 aroL shikimate kinase 97.2 0.00026 5.7E-09 65.1 3.9 32 255-286 4-35 (171)
335 PRK04841 transcriptional regul 97.2 0.012 2.5E-07 68.3 18.3 33 253-286 32-64 (903)
336 TIGR00150 HI0065_YjeE ATPase, 97.2 0.001 2.2E-08 59.0 7.3 28 253-280 22-49 (133)
337 PRK06762 hypothetical protein; 97.2 0.00026 5.7E-09 64.8 3.7 33 253-285 2-34 (166)
338 PRK06581 DNA polymerase III su 97.2 0.007 1.5E-07 58.7 13.4 125 253-414 15-162 (263)
339 cd03243 ABC_MutS_homologs The 97.2 0.0011 2.5E-08 62.8 7.9 64 254-317 30-121 (202)
340 cd00983 recA RecA is a bacter 97.2 0.00066 1.4E-08 69.1 6.5 70 249-318 51-147 (325)
341 TIGR00767 rho transcription te 97.2 0.0038 8.2E-08 65.0 12.2 24 255-278 170-193 (415)
342 cd01121 Sms Sms (bacterial rad 97.2 0.0021 4.5E-08 66.9 10.3 69 249-317 78-171 (372)
343 PRK14530 adenylate kinase; Pro 97.2 0.00032 6.9E-09 67.3 4.0 30 255-284 5-34 (215)
344 KOG0480 DNA replication licens 97.2 0.0023 4.9E-08 69.0 10.6 162 218-415 344-544 (764)
345 KOG3347 Predicted nucleotide k 97.2 0.0003 6.5E-09 62.8 3.4 42 253-296 7-48 (176)
346 PF13086 AAA_11: AAA domain; P 97.2 0.0003 6.5E-09 67.1 3.7 22 256-277 20-41 (236)
347 PF08298 AAA_PrkA: PrkA AAA do 97.2 0.0017 3.8E-08 66.2 9.3 65 218-289 59-125 (358)
348 PF13479 AAA_24: AAA domain 97.2 0.0011 2.4E-08 63.6 7.5 61 255-318 5-82 (213)
349 PTZ00088 adenylate kinase 1; P 97.2 0.00033 7.2E-09 68.0 3.8 30 256-285 9-38 (229)
350 COG1855 ATPase (PilT family) [ 97.2 0.00063 1.4E-08 70.6 5.9 104 151-278 170-288 (604)
351 COG1102 Cmk Cytidylate kinase 97.2 0.00033 7.1E-09 63.5 3.4 28 256-283 3-30 (179)
352 cd03280 ABC_MutS2 MutS2 homolo 97.2 0.00083 1.8E-08 63.7 6.4 21 254-274 29-49 (200)
353 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0018 3.8E-08 58.2 8.2 64 253-317 26-101 (144)
354 TIGR03878 thermo_KaiC_2 KaiC d 97.1 0.0013 2.9E-08 65.0 7.9 39 249-287 32-73 (259)
355 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00039 8.5E-09 64.6 3.8 30 255-284 5-34 (188)
356 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0015 3.3E-08 60.8 7.8 65 253-317 25-102 (177)
357 PRK06547 hypothetical protein; 97.1 0.00045 9.8E-09 64.1 4.2 34 252-285 14-47 (172)
358 PRK02496 adk adenylate kinase; 97.1 0.00035 7.5E-09 65.2 3.5 29 256-284 4-32 (184)
359 smart00072 GuKc Guanylate kina 97.1 0.0014 3.1E-08 61.2 7.5 25 253-277 2-26 (184)
360 PRK08233 hypothetical protein; 97.1 0.0027 5.8E-08 58.7 9.2 31 255-285 5-36 (182)
361 PRK11889 flhF flagellar biosyn 97.1 0.0064 1.4E-07 63.3 12.4 58 225-286 217-277 (436)
362 PF13245 AAA_19: Part of AAA d 97.1 0.00071 1.5E-08 54.0 4.3 31 256-286 13-50 (76)
363 PRK05703 flhF flagellar biosyn 97.1 0.0069 1.5E-07 64.2 13.0 36 253-288 221-261 (424)
364 cd00227 CPT Chloramphenicol (C 97.1 0.00039 8.4E-09 64.4 3.2 32 254-285 3-34 (175)
365 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0019 4.1E-08 64.2 8.2 85 215-314 56-159 (264)
366 PRK14528 adenylate kinase; Pro 97.1 0.00047 1E-08 64.7 3.7 30 255-284 3-32 (186)
367 PF06745 KaiC: KaiC; InterPro 97.1 0.0016 3.5E-08 62.8 7.5 50 249-300 15-68 (226)
368 TIGR01351 adk adenylate kinase 97.0 0.00049 1.1E-08 65.7 3.6 29 256-284 2-30 (210)
369 COG3283 TyrR Transcriptional r 97.0 0.0048 1E-07 62.6 10.6 100 206-316 191-305 (511)
370 cd03216 ABC_Carb_Monos_I This 97.0 0.0024 5.3E-08 58.5 7.9 25 253-277 26-50 (163)
371 PRK09354 recA recombinase A; P 97.0 0.0013 2.9E-08 67.5 6.5 70 249-318 56-152 (349)
372 PLN02200 adenylate kinase fami 97.0 0.00063 1.4E-08 66.3 4.1 30 253-282 43-72 (234)
373 COG4650 RtcR Sigma54-dependent 97.0 0.0017 3.6E-08 64.1 6.9 67 251-317 206-295 (531)
374 PRK13764 ATPase; Provisional 97.0 0.0017 3.7E-08 71.2 7.8 62 253-315 257-335 (602)
375 cd02019 NK Nucleoside/nucleoti 97.0 0.00097 2.1E-08 52.0 4.3 30 256-285 2-32 (69)
376 PRK00279 adk adenylate kinase; 97.0 0.00059 1.3E-08 65.4 3.8 29 256-284 3-31 (215)
377 TIGR02655 circ_KaiC circadian 97.0 0.0056 1.2E-07 66.1 11.7 50 249-300 17-70 (484)
378 COG1936 Predicted nucleotide k 97.0 0.00048 1E-08 63.2 2.8 29 256-285 3-31 (180)
379 PRK04182 cytidylate kinase; Pr 97.0 0.00064 1.4E-08 62.7 3.6 29 256-284 3-31 (180)
380 PRK06696 uridine kinase; Valid 97.0 0.0025 5.3E-08 61.6 7.7 40 253-292 22-64 (223)
381 smart00534 MUTSac ATPase domai 97.0 0.002 4.4E-08 60.3 6.9 62 256-317 2-91 (185)
382 cd03287 ABC_MSH3_euk MutS3 hom 96.9 0.0027 5.8E-08 61.4 7.8 63 253-315 31-121 (222)
383 COG0563 Adk Adenylate kinase a 96.9 0.00072 1.6E-08 63.1 3.7 27 256-282 3-29 (178)
384 cd03282 ABC_MSH4_euk MutS4 hom 96.9 0.0015 3.3E-08 62.2 6.0 62 254-315 30-119 (204)
385 PRK14527 adenylate kinase; Pro 96.9 0.00062 1.3E-08 64.0 3.2 32 253-284 6-37 (191)
386 KOG1051 Chaperone HSP104 and r 96.9 0.0042 9E-08 70.5 10.2 143 218-404 185-354 (898)
387 PF00448 SRP54: SRP54-type pro 96.9 0.0017 3.8E-08 61.5 6.2 34 253-286 1-37 (196)
388 cd03284 ABC_MutS1 MutS1 homolo 96.9 0.0031 6.7E-08 60.7 8.0 61 254-314 31-119 (216)
389 KOG0482 DNA replication licens 96.9 0.001 2.2E-08 69.9 4.8 163 220-416 343-542 (721)
390 cd00046 DEXDc DEAD-like helica 96.9 0.0017 3.7E-08 55.8 5.6 24 254-277 1-24 (144)
391 COG2874 FlaH Predicted ATPases 96.9 0.0042 9E-08 59.0 8.4 36 241-276 14-51 (235)
392 PF13238 AAA_18: AAA domain; P 96.9 0.00059 1.3E-08 58.9 2.6 22 256-277 1-22 (129)
393 TIGR02782 TrbB_P P-type conjug 96.9 0.0029 6.3E-08 64.0 7.9 62 253-314 132-214 (299)
394 COG4133 CcmA ABC-type transpor 96.9 0.0035 7.6E-08 58.4 7.6 23 255-277 30-52 (209)
395 PLN02199 shikimate kinase 96.9 0.0016 3.4E-08 65.2 5.8 34 253-286 102-135 (303)
396 cd01128 rho_factor Transcripti 96.9 0.003 6.4E-08 62.2 7.7 59 254-315 17-79 (249)
397 PF00406 ADK: Adenylate kinase 96.9 0.00063 1.4E-08 61.4 2.7 26 258-283 1-26 (151)
398 PRK01184 hypothetical protein; 96.9 0.00082 1.8E-08 62.6 3.6 29 255-284 3-31 (184)
399 TIGR02173 cyt_kin_arch cytidyl 96.9 0.00088 1.9E-08 61.2 3.7 29 256-284 3-31 (171)
400 PRK04040 adenylate kinase; Pro 96.9 0.00089 1.9E-08 63.0 3.7 29 254-282 3-33 (188)
401 PF13521 AAA_28: AAA domain; P 96.9 0.00077 1.7E-08 61.6 3.1 26 256-282 2-27 (163)
402 cd01131 PilT Pilus retraction 96.9 0.002 4.2E-08 61.1 6.0 23 256-278 4-26 (198)
403 PF06431 Polyoma_lg_T_C: Polyo 96.9 0.0045 9.8E-08 63.1 8.7 125 249-399 151-285 (417)
404 PRK04296 thymidine kinase; Pro 96.9 0.0067 1.4E-07 57.1 9.5 30 255-284 4-36 (190)
405 cd03228 ABCC_MRP_Like The MRP 96.8 0.0024 5.1E-08 58.9 6.2 26 252-277 27-52 (171)
406 PF04665 Pox_A32: Poxvirus A32 96.8 0.032 6.9E-07 54.5 14.2 45 368-415 128-172 (241)
407 PF02367 UPF0079: Uncharacteri 96.8 0.0021 4.6E-08 56.2 5.3 64 253-316 15-100 (123)
408 PF08433 KTI12: Chromatin asso 96.8 0.0019 4.2E-08 64.3 5.6 63 256-318 4-84 (270)
409 cd03247 ABCC_cytochrome_bd The 96.8 0.0058 1.2E-07 56.7 8.5 25 253-277 28-52 (178)
410 PHA02530 pseT polynucleotide k 96.8 0.0011 2.3E-08 66.8 3.8 31 254-284 3-34 (300)
411 PRK14526 adenylate kinase; Pro 96.8 0.0011 2.4E-08 63.5 3.7 28 256-283 3-30 (211)
412 PRK12724 flagellar biosynthesi 96.8 0.018 3.9E-07 60.5 12.9 36 253-288 223-262 (432)
413 TIGR01613 primase_Cterm phage/ 96.8 0.0059 1.3E-07 61.8 9.2 87 219-315 48-139 (304)
414 cd02027 APSK Adenosine 5'-phos 96.8 0.0014 3E-08 59.3 4.1 30 256-285 2-34 (149)
415 cd03246 ABCC_Protease_Secretio 96.8 0.0034 7.4E-08 58.0 6.8 24 254-277 29-52 (173)
416 TIGR00017 cmk cytidylate kinas 96.8 0.042 9.1E-07 52.9 14.5 30 255-284 4-33 (217)
417 PRK10078 ribose 1,5-bisphospho 96.7 0.0011 2.4E-08 62.0 3.4 30 254-283 3-32 (186)
418 PF01745 IPT: Isopentenyl tran 96.7 0.0013 2.9E-08 62.4 3.7 35 255-289 3-37 (233)
419 KOG2383 Predicted ATPase [Gene 96.7 0.002 4.2E-08 66.3 5.1 26 251-276 112-137 (467)
420 PTZ00035 Rad51 protein; Provis 96.7 0.0083 1.8E-07 61.7 9.8 28 249-276 114-141 (337)
421 cd03238 ABC_UvrA The excision 96.7 0.0058 1.3E-07 56.9 7.7 23 253-275 21-43 (176)
422 PRK12727 flagellar biosynthesi 96.7 0.0066 1.4E-07 65.4 8.9 26 252-277 349-374 (559)
423 cd03286 ABC_MSH6_euk MutS6 hom 96.7 0.0054 1.2E-07 59.1 7.6 63 253-315 30-120 (218)
424 TIGR00152 dephospho-CoA kinase 96.7 0.0056 1.2E-07 57.3 7.5 31 256-286 2-32 (188)
425 TIGR03574 selen_PSTK L-seryl-t 96.7 0.0016 3.5E-08 63.8 4.1 31 256-286 2-35 (249)
426 COG0467 RAD55 RecA-superfamily 96.7 0.0037 8.1E-08 61.7 6.6 50 249-300 19-71 (260)
427 KOG0477 DNA replication licens 96.6 0.0039 8.5E-08 67.1 6.9 67 256-323 485-564 (854)
428 COG3378 Phage associated DNA p 96.6 0.0061 1.3E-07 65.6 8.4 90 218-315 201-293 (517)
429 cd03227 ABC_Class2 ABC-type Cl 96.6 0.0049 1.1E-07 56.4 6.7 65 254-318 22-113 (162)
430 PRK14021 bifunctional shikimat 96.6 0.0018 3.8E-08 70.9 4.3 37 250-286 2-39 (542)
431 smart00487 DEXDc DEAD-like hel 96.6 0.0067 1.4E-07 55.5 7.5 25 254-278 25-50 (201)
432 PRK10416 signal recognition pa 96.6 0.017 3.7E-07 58.9 11.1 34 253-286 114-150 (318)
433 TIGR01448 recD_rel helicase, p 96.6 0.013 2.9E-07 66.2 11.2 63 254-316 339-428 (720)
434 COG0529 CysC Adenylylsulfate k 96.6 0.0051 1.1E-07 56.7 6.3 37 253-289 23-62 (197)
435 PRK12339 2-phosphoglycerate ki 96.6 0.0021 4.6E-08 60.9 4.0 29 253-281 3-31 (197)
436 PRK14529 adenylate kinase; Pro 96.6 0.0016 3.5E-08 62.9 3.1 28 256-283 3-30 (223)
437 PF10236 DAP3: Mitochondrial r 96.6 0.054 1.2E-06 55.1 14.3 23 394-416 258-280 (309)
438 COG5271 MDN1 AAA ATPase contai 96.6 0.022 4.8E-07 67.4 12.3 130 255-414 890-1048(4600)
439 PF00488 MutS_V: MutS domain V 96.5 0.0081 1.8E-07 58.6 7.9 62 254-315 44-133 (235)
440 cd02022 DPCK Dephospho-coenzym 96.5 0.0022 4.7E-08 59.7 3.8 30 256-286 2-31 (179)
441 PRK10867 signal recognition pa 96.5 0.13 2.7E-06 54.7 17.4 39 252-290 99-141 (433)
442 KOG3354 Gluconate kinase [Carb 96.5 0.0018 4E-08 58.2 3.0 46 251-298 10-55 (191)
443 cd03230 ABC_DR_subfamily_A Thi 96.5 0.0081 1.8E-07 55.5 7.5 24 254-277 27-50 (173)
444 PLN02674 adenylate kinase 96.5 0.0023 5E-08 62.6 4.0 31 254-284 32-62 (244)
445 COG3854 SpoIIIAA ncharacterize 96.5 0.012 2.7E-07 56.4 8.6 24 255-278 139-162 (308)
446 TIGR02655 circ_KaiC circadian 96.5 0.01 2.2E-07 64.1 9.1 29 249-277 259-287 (484)
447 PRK13833 conjugal transfer pro 96.5 0.0068 1.5E-07 61.8 7.2 62 253-314 144-225 (323)
448 PRK09302 circadian clock prote 96.5 0.037 8E-07 60.2 13.3 39 249-287 27-69 (509)
449 TIGR02533 type_II_gspE general 96.5 0.0096 2.1E-07 64.2 8.6 87 214-315 217-322 (486)
450 KOG2543 Origin recognition com 96.5 0.02 4.3E-07 58.8 10.2 37 252-288 29-65 (438)
451 PRK00889 adenylylsulfate kinas 96.5 0.0032 7E-08 58.1 4.4 33 253-285 4-39 (175)
452 PRK04328 hypothetical protein; 96.5 0.0092 2E-07 58.7 7.8 50 249-300 19-71 (249)
453 cd03214 ABC_Iron-Siderophores_ 96.5 0.0061 1.3E-07 56.7 6.2 25 253-277 25-49 (180)
454 PRK05541 adenylylsulfate kinas 96.4 0.0035 7.6E-08 58.0 4.5 26 253-278 7-32 (176)
455 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.0038 8.2E-08 60.9 4.9 40 249-288 17-59 (237)
456 COG4088 Predicted nucleotide k 96.4 0.0048 1E-07 58.2 5.2 65 256-320 4-89 (261)
457 PRK12338 hypothetical protein; 96.4 0.0026 5.6E-08 64.5 3.7 29 253-281 4-32 (319)
458 TIGR02322 phosphon_PhnN phosph 96.4 0.0024 5.1E-08 59.2 3.1 25 255-279 3-27 (179)
459 COG2805 PilT Tfp pilus assembl 96.4 0.012 2.5E-07 58.7 8.0 60 206-285 97-161 (353)
460 PHA00350 putative assembly pro 96.4 0.0073 1.6E-07 63.1 7.0 64 256-320 4-97 (399)
461 PRK09825 idnK D-gluconate kina 96.4 0.0051 1.1E-07 57.2 5.3 26 255-280 5-30 (176)
462 PRK09519 recA DNA recombinatio 96.4 0.0077 1.7E-07 67.8 7.6 70 249-318 56-152 (790)
463 PRK10436 hypothetical protein; 96.4 0.011 2.3E-07 63.4 8.3 85 215-314 194-297 (462)
464 PRK10646 ADP-binding protein; 96.4 0.013 2.9E-07 53.1 7.8 62 254-315 29-112 (153)
465 PF01583 APS_kinase: Adenylyls 96.4 0.0031 6.7E-08 57.5 3.7 35 255-289 4-41 (156)
466 TIGR01420 pilT_fam pilus retra 96.4 0.0068 1.5E-07 62.5 6.7 61 254-314 123-205 (343)
467 PRK11174 cysteine/glutathione 96.4 0.0059 1.3E-07 67.5 6.6 28 250-277 373-400 (588)
468 TIGR00416 sms DNA repair prote 96.4 0.0069 1.5E-07 64.8 6.8 38 249-286 90-130 (454)
469 PLN02459 probable adenylate ki 96.4 0.0033 7.1E-08 62.0 4.0 29 256-284 32-60 (261)
470 PF00519 PPV_E1_C: Papillomavi 96.4 0.0065 1.4E-07 62.6 6.2 60 249-314 258-317 (432)
471 TIGR02858 spore_III_AA stage I 96.4 0.0063 1.4E-07 60.6 6.0 25 254-278 112-136 (270)
472 TIGR02236 recomb_radA DNA repa 96.3 0.0079 1.7E-07 61.0 6.8 40 249-288 91-139 (310)
473 cd03239 ABC_SMC_head The struc 96.3 0.014 3E-07 54.5 7.8 24 255-278 24-47 (178)
474 cd04177 RSR1 RSR1 subgroup. R 96.3 0.02 4.4E-07 52.0 8.8 22 256-277 4-25 (168)
475 PLN02165 adenylate isopentenyl 96.3 0.0033 7.2E-08 64.0 3.8 35 254-288 44-78 (334)
476 PF13555 AAA_29: P-loop contai 96.3 0.0039 8.4E-08 47.7 3.2 22 256-277 26-47 (62)
477 PRK11545 gntK gluconate kinase 96.3 0.0028 6.1E-08 58.2 3.0 27 259-285 1-27 (163)
478 PRK13894 conjugal transfer ATP 96.3 0.01 2.2E-07 60.6 7.3 25 253-277 148-172 (319)
479 COG2274 SunT ABC-type bacterio 96.3 0.012 2.6E-07 66.2 8.4 28 250-277 496-523 (709)
480 PRK14730 coaE dephospho-CoA ki 96.3 0.0035 7.6E-08 59.3 3.6 31 256-286 4-34 (195)
481 PF06414 Zeta_toxin: Zeta toxi 96.3 0.0036 7.7E-08 59.3 3.7 39 251-289 13-52 (199)
482 COG1119 ModF ABC-type molybden 96.3 0.024 5.2E-07 55.0 9.2 26 252-277 56-81 (257)
483 cd01863 Rab18 Rab18 subfamily. 96.3 0.019 4.2E-07 51.5 8.2 21 256-276 3-23 (161)
484 TIGR02238 recomb_DMC1 meiotic 96.3 0.011 2.4E-07 60.1 7.3 53 249-301 92-153 (313)
485 COG2804 PulE Type II secretory 96.2 0.012 2.6E-07 62.6 7.6 83 215-314 234-337 (500)
486 PRK13808 adenylate kinase; Pro 96.2 0.0035 7.7E-08 64.0 3.6 29 256-284 3-31 (333)
487 TIGR02524 dot_icm_DotB Dot/Icm 96.2 0.0067 1.5E-07 62.9 5.7 24 254-277 135-158 (358)
488 PRK13900 type IV secretion sys 96.2 0.013 2.8E-07 60.2 7.7 26 253-278 160-185 (332)
489 cd04138 H_N_K_Ras_like H-Ras/N 96.2 0.03 6.5E-07 49.9 9.3 21 256-276 4-24 (162)
490 cd02028 UMPK_like Uridine mono 96.2 0.0048 1E-07 57.5 4.1 34 256-289 2-38 (179)
491 TIGR00064 ftsY signal recognit 96.2 0.01 2.3E-07 59.1 6.7 37 252-288 71-110 (272)
492 cd04159 Arl10_like Arl10-like 96.2 0.0091 2E-07 52.7 5.8 21 256-276 2-22 (159)
493 COG1121 ZnuC ABC-type Mn/Zn tr 96.2 0.014 3E-07 57.3 7.3 23 255-277 32-54 (254)
494 PRK05480 uridine/cytidine kina 96.2 0.0055 1.2E-07 58.3 4.5 34 254-287 7-41 (209)
495 cd01130 VirB11-like_ATPase Typ 96.2 0.0045 9.8E-08 58.0 3.9 26 253-278 25-50 (186)
496 PRK13657 cyclic beta-1,2-gluca 96.2 0.012 2.6E-07 65.1 7.7 27 251-277 359-385 (588)
497 TIGR02538 type_IV_pilB type IV 96.2 0.015 3.2E-07 64.1 8.3 85 216-315 293-396 (564)
498 PRK12726 flagellar biosynthesi 96.2 0.011 2.4E-07 61.3 6.7 37 253-289 206-245 (407)
499 TIGR02768 TraA_Ti Ti-type conj 96.2 0.013 2.8E-07 66.5 7.9 63 254-316 369-451 (744)
500 COG3267 ExeA Type II secretory 96.2 0.13 2.9E-06 50.2 13.6 159 251-442 48-246 (269)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-105 Score=808.89 Aligned_cols=436 Identities=50% Similarity=0.843 Sum_probs=408.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcccCCceEEEEeecCCCCCccHHHHHHHHHhCCCCCcccc
Q 011254 13 TIVSAAASAAATAMVIRSITHDYLPFEVRAYFAVKLKSLLARFSSELTLVINEYDDGLNQNVLFKAAKLYLEPRIPPYVK 92 (490)
Q Consensus 13 ~~~~~~~S~~a~~~~~~~~~~~~~P~~l~~~~~~~~~~l~~~~~~~~ti~i~e~~~~~~~N~ly~a~~~YL~t~~~~~~~ 92 (490)
++|+++||++|++||+|+|+++++|.+++.||.+++++|++.+++|.++.|.|+ +|+.+|++|.|+|.||++++++.++
T Consensus 2 ~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~-~g~~~n~~~~aie~yl~~k~~~~~~ 80 (457)
T KOG0743|consen 2 SVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQ-DGVFRNQLYVAIEVYLSSKSSAIAK 80 (457)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehh-ccchHHHHHHHHHHhhhccchhhhh
Confidence 578999999999999999999999999999999999999999999999999999 7899999999999999999999999
Q ss_pred eeEeecCCCCCceEEeccCCCeEEEeecCeEEEEEEEEecCCCCccCCCCCCCCCCCCCceEEEEEecccchHHHHHHhH
Q 011254 93 RIKINLPNKETKISCSVEKDEEIVDVFNGVQLKWRFSSKQVPTEMVHHPDHYNPVVKSEDRCFELSFHKKYKQVVMDSYI 172 (490)
Q Consensus 93 rl~~~~~~~~~~~~~~~~~~~~v~D~f~G~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~~~~~v~~~yl 172 (490)
||+.+...+++++++.++++++|.|+|+||+++|.+++..++.+.+. ....+.|+|+|+|+++||+.|+.+||
T Consensus 81 rl~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~-------~~~~~~r~~~L~f~k~~~e~V~~syl 153 (457)
T KOG0743|consen 81 RLTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFV-------EREREKRYFELTFHKKPRELVTLSYL 153 (457)
T ss_pred hhhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCccccc-------ccCCcceEEEEEecCccHHHhHHhHH
Confidence 99999999999999999999999999999999999998876665433 13468999999999999999999999
Q ss_pred HHHHHhchhhhcccceEEEEeecccc-ccCCCCCcceecccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCC
Q 011254 173 PHVLKQSKETSTQKKTLKLFTLRYDR-MHGMRGDVWQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKA 251 (490)
Q Consensus 173 ~~v~~~~~~i~~~~~~~~l~~~~~~~-~~~~~~~~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~ 251 (490)
+++..++++|..+++.+++|+++.+. +++..+..|+++.|+||+||++|+|++++|++|++|+..|+++++||+++|+|
T Consensus 154 ~~v~~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGka 233 (457)
T KOG0743|consen 154 PYVVSKAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKA 233 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcc
Confidence 99999999999999999999997654 55556789999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhccc
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNA 331 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~ 331 (490)
|+||||||||||||||||++||||+|+++||+++++++..+++|++++..++++||||||||||.+.++++..+.....
T Consensus 234 wKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~- 312 (457)
T KOG0743|consen 234 WKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENF- 312 (457)
T ss_pred hhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887766543211
Q ss_pred ccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011254 332 MDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASS 411 (490)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~ 411 (490)
+...+.+|||||||++||+||+||+++||||||||+|+|||||+||||||+||+|++|++++++.|++|
T Consensus 313 -----------~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~n 381 (457)
T KOG0743|consen 313 -----------EGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASN 381 (457)
T ss_pred -----------cCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHH
Confidence 013467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCC-CCchHHHHHhhhccCCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhhcchh
Q 011254 412 YLGITE-HPLFLEVEGLIEKAKVTPADVAEQLMRNE-VPEIALRELIQFLEIKRRESDE 468 (490)
Q Consensus 412 ~l~~~~-~~l~~~i~~l~~~~~~tpa~i~~~l~~~~-~~~~al~~l~~~l~~~~~~~~~ 468 (490)
||+.++ |+++++|++++.++.+|||||++.||.+. |++.||+.|+++++.++.+.++
T Consensus 382 YL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~~~ 440 (457)
T KOG0743|consen 382 YLGIEEDHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKKEKRNK 440 (457)
T ss_pred hcCCCCCcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhhcc
Confidence 999985 99999999999999999999999999887 8999999999999999876544
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-43 Score=345.35 Aligned_cols=235 Identities=25% Similarity=0.337 Sum_probs=192.9
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc--
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL-- 289 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~-- 289 (490)
-.+..|+++|+|.++++++|.+.++.++.+|+.|.++|+.+|+|+|||||||||||.||+|+|++.++.|+.+..+++
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 345589999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ----CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc
Q 011254 290 ----RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS 363 (490)
Q Consensus 290 ----~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s 363 (490)
.+..-++++|.-+. .||||||||||++...+ .....+ .....++|+-+||+.|||+.+
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR--~d~~t~--------------gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKR--FDSGTS--------------GDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhccc--ccCCCC--------------chHHHHHHHHHHHHhccCCCC
Confidence 45566788887765 79999999999998633 222221 145668999999999999977
Q ss_pred CCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhc-cCCCHHHHHHHH
Q 011254 364 SCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEK-AKVTPADVAEQL 442 (490)
Q Consensus 364 ~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l 442 (490)
. +++=||++||+++.|||||+||||||++|+||+|+.++|.+|++.+...-...-.-+++.++.. .++|+|||..+|
T Consensus 288 ~--~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 288 R--GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAIC 365 (406)
T ss_pred C--CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHH
Confidence 5 5699999999999999999999999999999999999999999988765543333345555543 349999999998
Q ss_pred Hc-------CCCHHHHHHHHHHHHHHHhh
Q 011254 443 MR-------NEVPEIALRELIQFLEIKRR 464 (490)
Q Consensus 443 ~~-------~~~~~~al~~l~~~l~~~~~ 464 (490)
.. .+-..+.-+.+.++.+....
T Consensus 366 tEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 366 TEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 53 23334445555555554433
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-39 Score=337.68 Aligned_cols=211 Identities=23% Similarity=0.341 Sum_probs=187.9
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc---
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL--- 289 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~--- 289 (490)
-+..+|++++|.+++|++|.+.+.+++.+++.|.++|+.+|+|+|||||||||||++|+|+|++.+.+|+.+.+.++
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk 507 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK 507 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred ---CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 290 ---RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 290 ---~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
.++..++++|.++. .||||||||||++...++ +.. .....+.+++||+.|||+...
T Consensus 508 ~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~--g~~-----------------~~v~~RVlsqLLtEmDG~e~~ 568 (693)
T KOG0730|consen 508 YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRG--GSS-----------------SGVTDRVLSQLLTEMDGLEAL 568 (693)
T ss_pred hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccC--CCc-----------------cchHHHHHHHHHHHccccccc
Confidence 56788999999986 699999999999986332 111 345688999999999999775
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHH
Q 011254 365 CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLM 443 (490)
Q Consensus 365 ~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 443 (490)
++++||++||+|+.||+||+||||||..|++|+|+.++|.+|++.++......-.-++++|++.+ +||+|||.++|.
T Consensus 569 --k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq 646 (693)
T KOG0730|consen 569 --KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQ 646 (693)
T ss_pred --CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999876554456778888765 599999999986
Q ss_pred c
Q 011254 444 R 444 (490)
Q Consensus 444 ~ 444 (490)
+
T Consensus 647 ~ 647 (693)
T KOG0730|consen 647 E 647 (693)
T ss_pred H
Confidence 4
No 4
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-38 Score=324.22 Aligned_cols=207 Identities=25% Similarity=0.350 Sum_probs=180.0
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc-----
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL----- 289 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~----- 289 (490)
..+|+++-|-++.|+++.+. ..|+++|+.|.++|...|+|+||.||||||||.||+|+|++.+.||+....+++
T Consensus 300 nv~F~dVkG~DEAK~ELeEi-VefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEI-VEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHH-HHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 46799999999999999664 569999999999999999999999999999999999999999999999999887
Q ss_pred -CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCC
Q 011254 290 -RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCG 366 (490)
Q Consensus 290 -~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~ 366 (490)
.+..++|.+|..+. .||||||||||++.+.+.... ....+.|+++||..|||+..+
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~-------------------~~y~kqTlNQLLvEmDGF~qN-- 437 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD-------------------QHYAKQTLNQLLVEMDGFKQN-- 437 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH-------------------HHHHHHHHHHHHHHhcCcCcC--
Confidence 46889999999875 799999999999976443221 125689999999999999876
Q ss_pred CcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhc-cCCCHHHHHHHHH
Q 011254 367 DERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEK-AKVTPADVAEQLM 443 (490)
Q Consensus 367 ~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 443 (490)
+++|||++||.|+.||+||+||||||+||.+|.|+...|.+|++.|+....+.-.-+..-++.. .+||+||+++++-
T Consensus 438 eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVN 515 (752)
T KOG0734|consen 438 EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVN 515 (752)
T ss_pred CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHH
Confidence 4599999999999999999999999999999999999999999999986544433344445554 4699999998764
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-37 Score=319.34 Aligned_cols=209 Identities=23% Similarity=0.357 Sum_probs=183.3
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc----
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL---- 289 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~---- 289 (490)
+..+|++|++.++++.++...+..++++|+.|+++|+..|.|+|||||||||||.||+|+||+.|.+|+.+...++
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY 585 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY 585 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred --CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 290 --RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 290 --~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
.++..+|.+|..+. .||||||||||++++.++... ...+.+.+++||..|||+....
T Consensus 586 VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-------------------s~~s~RvvNqLLtElDGl~~R~ 646 (802)
T KOG0733|consen 586 VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-------------------SSVSSRVVNQLLTELDGLEERR 646 (802)
T ss_pred hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-------------------chhHHHHHHHHHHHhccccccc
Confidence 46778999999875 799999999999987444322 4456789999999999998765
Q ss_pred CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchH--HHHHhhhc---cCCCHHHHHH
Q 011254 366 GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFL--EVEGLIEK---AKVTPADVAE 440 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~--~i~~l~~~---~~~tpa~i~~ 440 (490)
| +.||++||+||.+|||++||||||..+++++|+.++|..|++........++.+ ++++++.. .+||+||++.
T Consensus 647 g--V~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaa 724 (802)
T KOG0733|consen 647 G--VYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAA 724 (802)
T ss_pred c--eEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHH
Confidence 5 999999999999999999999999999999999999999999888754444433 34555543 3699999998
Q ss_pred HHH
Q 011254 441 QLM 443 (490)
Q Consensus 441 ~l~ 443 (490)
++.
T Consensus 725 Lvr 727 (802)
T KOG0733|consen 725 LVR 727 (802)
T ss_pred HHH
Confidence 864
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-36 Score=310.06 Aligned_cols=226 Identities=20% Similarity=0.311 Sum_probs=187.3
Q ss_pred cccCC-CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccc
Q 011254 210 VNLDH-PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTN 288 (490)
Q Consensus 210 ~~~~~-~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~ 288 (490)
..+++ ..+|.+|+|.+....++.+.+.. +.+|+.|..+|..+|||+|||||||||||+||+|+|++++.||+.++..+
T Consensus 180 ~~~~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApe 258 (802)
T KOG0733|consen 180 LEFPESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPE 258 (802)
T ss_pred cCCCCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchh
Confidence 44444 36899999999999999887765 99999999999999999999999999999999999999999999999888
Q ss_pred c------CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcc
Q 011254 289 L------RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG 360 (490)
Q Consensus 289 ~------~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg 360 (490)
+ .++..++++|..+. .|||+||||||++.+.+.-...++ .++.+++||+.||+
T Consensus 259 ivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreM-------------------ErRiVaQLlt~mD~ 319 (802)
T KOG0733|consen 259 IVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREM-------------------ERRIVAQLLTSMDE 319 (802)
T ss_pred hhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHH-------------------HHHHHHHHHHhhhc
Confidence 7 46789999999986 699999999999987554433322 47899999999999
Q ss_pred cccC--CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHH
Q 011254 361 LWSS--CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPAD 437 (490)
Q Consensus 361 l~s~--~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~ 437 (490)
+... .|+.++||+|||+||.|||||+|+||||..|.+..|+..+|.+|++..+....+...-++.+|+.-+ +|-+||
T Consensus 320 l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGAD 399 (802)
T KOG0733|consen 320 LSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGAD 399 (802)
T ss_pred ccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchh
Confidence 8654 3578999999999999999999999999999999999999999999888755444444455555432 488899
Q ss_pred HHHHHHcCCCHHHHHHHHHH
Q 011254 438 VAEQLMRNEVPEIALRELIQ 457 (490)
Q Consensus 438 i~~~l~~~~~~~~al~~l~~ 457 (490)
+..++... .-.|++.+.+
T Consensus 400 L~AL~~~A--a~vAikR~ld 417 (802)
T KOG0733|consen 400 LMALCREA--AFVAIKRILD 417 (802)
T ss_pred HHHHHHHH--HHHHHHHHhh
Confidence 88876542 3445555433
No 7
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-36 Score=322.55 Aligned_cols=213 Identities=27% Similarity=0.387 Sum_probs=182.1
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc---
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL--- 289 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~--- 289 (490)
+.+.+|++++|.++.|++|.+.+ .|+++|+.|.++|...|||+||+||||||||.||+|+|.+.|.||+.++.+++
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 44589999999999999998876 59999999999999999999999999999999999999999999999999987
Q ss_pred ---CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 290 ---RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 290 ---~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
.+.+.++.+|..+. .||||||||||++...+. +.. .+..+.....++++||..|||+.+.
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~--G~~-------------~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRG--GKG-------------TGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEeccccccccccc--ccc-------------cCCCChHHHHHHHHHHHHhcCCcCC
Confidence 45789999999886 699999999999975332 100 0112556789999999999999876
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCC-chHHHHHhhhc-cCCCHHHHHHHH
Q 011254 365 CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHP-LFLEVEGLIEK-AKVTPADVAEQL 442 (490)
Q Consensus 365 ~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~-l~~~i~~l~~~-~~~tpa~i~~~l 442 (490)
..+||+++||+++.||+||+||||||++|.++.|+..+|..|++.++...... ...++..++.. .++|+|||++++
T Consensus 449 --~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ 526 (774)
T KOG0731|consen 449 --KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLC 526 (774)
T ss_pred --CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhh
Confidence 55999999999999999999999999999999999999999999999765432 23345555443 469999999987
Q ss_pred H
Q 011254 443 M 443 (490)
Q Consensus 443 ~ 443 (490)
.
T Consensus 527 n 527 (774)
T KOG0731|consen 527 N 527 (774)
T ss_pred h
Confidence 4
No 8
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-36 Score=281.47 Aligned_cols=214 Identities=27% Similarity=0.410 Sum_probs=182.2
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc---
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL--- 289 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~--- 289 (490)
.+..++.+++|.+-+|++|.+.++.++.+.+.|+++|+.+|||+|||||||||||+|++|+|++....|+.+..+++
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqk 228 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 228 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ---CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 290 ---RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 290 ---~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
.+...++.+|.-+. .|+||||||||++.. .|...+.. .....+..|-+|||.|||+...
T Consensus 229 ylgegprmvrdvfrlakenapsiifideidaiat--krfdaqtg--------------adrevqril~ellnqmdgfdq~ 292 (408)
T KOG0727|consen 229 YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIAT--KRFDAQTG--------------ADREVQRILIELLNQMDGFDQT 292 (408)
T ss_pred HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhh--hhcccccc--------------ccHHHHHHHHHHHHhccCcCcc
Confidence 45667888887664 799999999999975 44433321 1445678899999999999765
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhc-cCCCHHHHHHHHH
Q 011254 365 CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEK-AKVTPADVAEQLM 443 (490)
Q Consensus 365 ~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 443 (490)
-++-||++||+.+.|||||+||||+|++|+||+|+..+++-+|....+.....-..+++.++.+ ..+|+|+|..+|.
T Consensus 293 --~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicq 370 (408)
T KOG0727|consen 293 --TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQ 370 (408)
T ss_pred --cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHH
Confidence 4599999999999999999999999999999999999999888877665544444566776643 4599999998875
Q ss_pred c
Q 011254 444 R 444 (490)
Q Consensus 444 ~ 444 (490)
.
T Consensus 371 e 371 (408)
T KOG0727|consen 371 E 371 (408)
T ss_pred H
Confidence 4
No 9
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-35 Score=309.01 Aligned_cols=210 Identities=24% Similarity=0.379 Sum_probs=173.2
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc----
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL---- 289 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~---- 289 (490)
+..+|+||+|.+++|.+|.+-+..++.+|+.|.. |...+.|+|||||||||||.+|+|+|.++...|+.+...++
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMY 745 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMY 745 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHH
Confidence 4578999999999999999999999999999865 66677899999999999999999999999999999998887
Q ss_pred --CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 290 --RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 290 --~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
+++.++|++|.++. .|||||+||+|.+.+.+++.++. .....+.+|+||..|||+....
T Consensus 746 VGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDS-----------------GGVMDRVVSQLLAELDgls~~~ 808 (953)
T KOG0736|consen 746 VGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDS-----------------GGVMDRVVSQLLAELDGLSDSS 808 (953)
T ss_pred hcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCc-----------------cccHHHHHHHHHHHhhcccCCC
Confidence 68899999999986 79999999999999866554322 3456789999999999998656
Q ss_pred CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHH-HHHHHHHh---hCCCCCCchHHHHHhhhccCCCHHHHHHH
Q 011254 366 GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCG-FKMLASSY---LGITEHPLFLEVEGLIEKAKVTPADVAEQ 441 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~-r~~L~~~~---l~~~~~~l~~~i~~l~~~~~~tpa~i~~~ 441 (490)
...++||++||+||.|||||+||||||+-++++.|...+ +..+++.. +..++.....+|...+. ..+|+||+-.+
T Consensus 809 s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp-~~~TGADlYsL 887 (953)
T KOG0736|consen 809 SQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCP-PNMTGADLYSL 887 (953)
T ss_pred CCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCC-cCCchhHHHHH
Confidence 678999999999999999999999999999999886544 44455432 22333332333333332 35999999887
Q ss_pred H
Q 011254 442 L 442 (490)
Q Consensus 442 l 442 (490)
|
T Consensus 888 C 888 (953)
T KOG0736|consen 888 C 888 (953)
T ss_pred H
Confidence 5
No 10
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.9e-33 Score=291.84 Aligned_cols=232 Identities=24% Similarity=0.340 Sum_probs=184.8
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc---
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL--- 289 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~--- 289 (490)
.+..+|++|+|.+.+|++|.+.+..++.+++.|.++|.++|+|+|||||||||||++|+++|++++.+++.+..+.+
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK 218 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred ---CChHHHHHHHHhc--cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 290 ---RGNMELRNLLIAT--ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 290 ---~~~~~l~~l~~~~--~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
.+...++.+|..+ ..|+||||||||.++..+. ..... ........+.+||+.+||+...
T Consensus 219 ~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~--~~~~~--------------~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 219 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRF--DAQTG--------------ADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccc--cccCC--------------ccHHHHHHHHHHHHHhhccCCC
Confidence 2345677787765 4799999999999875221 11000 0223456789999999998765
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHH
Q 011254 365 CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLM 443 (490)
Q Consensus 365 ~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 443 (490)
. +++||+|||+++.||||++||||||.+|+|++|+.++|..|++.++.........++..++..+ ++|||||..++.
T Consensus 283 ~--~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~ 360 (398)
T PTZ00454 283 T--NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQ 360 (398)
T ss_pred C--CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 3 4899999999999999999999999999999999999999999888654433333556666543 699999998874
Q ss_pred c-------CCCHHHHHHHHHHHHHHH
Q 011254 444 R-------NEVPEIALRELIQFLEIK 462 (490)
Q Consensus 444 ~-------~~~~~~al~~l~~~l~~~ 462 (490)
. .+......+.+.++++..
T Consensus 361 eA~~~A~r~~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 361 EAGMQAVRKNRYVILPKDFEKGYKTV 386 (398)
T ss_pred HHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 3 222334455555555543
No 11
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-35 Score=279.40 Aligned_cols=216 Identities=26% Similarity=0.351 Sum_probs=178.0
Q ss_pred ccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc-
Q 011254 211 NLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL- 289 (490)
Q Consensus 211 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~- 289 (490)
.-.+..||.+++|.+.+.++|.+.++.++.+|++|...|+.+|+|++|||+||||||.||+|+||.....|+.+-.+++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 3345579999999999999999999999999999999999999999999999999999999999999999999888876
Q ss_pred -----CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccc
Q 011254 290 -----RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLW 362 (490)
Q Consensus 290 -----~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~ 362 (490)
.+..-++++|.-+. .|||+||||||++.. .|.+..+. .....++++-+|||.+||+.
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGt--KRyds~Sg--------------gerEiQrtmLELLNQldGFd 320 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT--KRYDSNSG--------------GEREIQRTMLELLNQLDGFD 320 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhcc--ccccCCCc--------------cHHHHHHHHHHHHHhccCcc
Confidence 24455677776654 799999999999975 23222211 13456788889999999998
Q ss_pred cCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhh-ccCCCHHHHHHH
Q 011254 363 SSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIE-KAKVTPADVAEQ 441 (490)
Q Consensus 363 s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~-~~~~tpa~i~~~ 441 (490)
+. +.+-||++||+.+.|||||+||||+|++|+|+.|+...++.||..+-+.-...-.-.++.++. +..+|+|||..+
T Consensus 321 sr--gDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAi 398 (440)
T KOG0726|consen 321 SR--GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAI 398 (440)
T ss_pred cc--CCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHH
Confidence 85 459999999999999999999999999999999999999999875544332222234566654 567999999988
Q ss_pred HHc
Q 011254 442 LMR 444 (490)
Q Consensus 442 l~~ 444 (490)
|..
T Consensus 399 ctE 401 (440)
T KOG0726|consen 399 CTE 401 (440)
T ss_pred HHH
Confidence 754
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-34 Score=267.38 Aligned_cols=213 Identities=26% Similarity=0.336 Sum_probs=176.8
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc----
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL---- 289 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~---- 289 (490)
+.++++-++|.+.+.++|.+-++.+.++|+.|..+|++-|+|+|||||||||||.||+|+|.+..+.|+.++.+++
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 4467899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred --CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 290 --RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 290 --~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
.+..-++++|.-+. .|||||+||||.+...+... .. +.....+++.-+|||.+||+...
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~--~~--------------ggdsevqrtmlellnqldgfeat- 284 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVES--GS--------------GGDSEVQRTMLELLNQLDGFEAT- 284 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccC--CC--------------CccHHHHHHHHHHHHhccccccc-
Confidence 35566888887765 79999999999987532211 11 11455688999999999999876
Q ss_pred CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHHc
Q 011254 366 GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLMR 444 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~ 444 (490)
+++-||++||+.+-|||||+||||+|++|+||.|+.++|..|++..-..-+.----++..++++. +.|+|++...|..
T Consensus 285 -knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcte 363 (404)
T KOG0728|consen 285 -KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTE 363 (404)
T ss_pred -cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhh
Confidence 45999999999999999999999999999999999999999998655433222222344555543 4788999888753
No 13
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-33 Score=275.84 Aligned_cols=210 Identities=21% Similarity=0.325 Sum_probs=171.5
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC--
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR-- 290 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~-- 290 (490)
.+...|++|+|..+.|+-|.+.+..++-.|++|+.+-.|| +|+|++||||||||+||+|+|.+++..|+.++.+.+.
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 3447899999999999999999999999999999998888 6999999999999999999999999999999988872
Q ss_pred ---ChHHHHHHHHhcc---CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 291 ---GNMELRNLLIATE---NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 291 ---~~~~l~~l~~~~~---~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
....|.++|..+. .|++|||||||.++..++.... ...+++.-++||..|||+...
T Consensus 285 wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~E------------------HEaSRRvKsELLvQmDG~~~t 346 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSE------------------HEASRRVKSELLVQMDGVQGT 346 (491)
T ss_pred hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccc------------------hhHHHHHHHHHHHHhhccccc
Confidence 2334555555443 7999999999999874433211 456788899999999998654
Q ss_pred CC--CcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHH
Q 011254 365 CG--DERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQ 441 (490)
Q Consensus 365 ~~--~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~ 441 (490)
.. +-++|+++||.|++||.||+| ||.+.|++|+|+.++|+.|++..|+.....-.-.++.++++. +||++||.++
T Consensus 347 ~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nv 424 (491)
T KOG0738|consen 347 LENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNV 424 (491)
T ss_pred cccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHH
Confidence 22 126777899999999999999 999999999999999999999888754332223344555443 4999999888
Q ss_pred HH
Q 011254 442 LM 443 (490)
Q Consensus 442 l~ 443 (490)
|-
T Consensus 425 Cr 426 (491)
T KOG0738|consen 425 CR 426 (491)
T ss_pred HH
Confidence 63
No 14
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-33 Score=296.51 Aligned_cols=233 Identities=26% Similarity=0.333 Sum_probs=192.6
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc---
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL--- 289 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~--- 289 (490)
....+|.+++|.++.|+++.+.+ .|+++|..|.++|...|+|+||+||||||||+||+|+|++.+.|++.++.+++
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 45589999999999999998765 59999999999999999999999999999999999999999999999999987
Q ss_pred ---CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 290 ---RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 290 ---~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
.+.+.+|.+|..+. .||||||||||+....+... . +..+.....|+++||..|||+.++
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g--~--------------GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG--L--------------GGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCC--C--------------CCCchHHHHHHHHHHhhhccCCCC
Confidence 47899999999987 59999999999986422211 0 112455678999999999999865
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHH
Q 011254 365 CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLM 443 (490)
Q Consensus 365 ~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 443 (490)
+.++||++||+|+-|||||+||||||++|.++.|+...|.+|++-++......-.-++..++..+ ++++|++++++.
T Consensus 287 --~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~N 364 (596)
T COG0465 287 --EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLN 364 (596)
T ss_pred --CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHH
Confidence 45999999999999999999999999999999999999999999666544333223344444433 599999999883
Q ss_pred --------------cCCCHHHHHHHHHHHHHHHhh
Q 011254 444 --------------RNEVPEIALRELIQFLEIKRR 464 (490)
Q Consensus 444 --------------~~~~~~~al~~l~~~l~~~~~ 464 (490)
...+.+.|.+.++-..+++-.
T Consensus 365 EAal~aar~n~~~i~~~~i~ea~drv~~G~erks~ 399 (596)
T COG0465 365 EAALLAARRNKKEITMRDIEEAIDRVIAGPERKSR 399 (596)
T ss_pred HHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCc
Confidence 124777788887777766655
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-33 Score=262.29 Aligned_cols=215 Identities=25% Similarity=0.324 Sum_probs=173.2
Q ss_pred ccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc-
Q 011254 211 NLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL- 289 (490)
Q Consensus 211 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~- 289 (490)
.-.+..++++++|.+.+.+++++.+..++.+++.|..+|+.+|+|+|+|||||||||.+|+|.|...+..|..+-..++
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 3345578999999999999999999999999999999999999999999999999999999999999999888776665
Q ss_pred -----CChHHHHHHHHhc--cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccc
Q 011254 290 -----RGNMELRNLLIAT--ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLW 362 (490)
Q Consensus 290 -----~~~~~l~~l~~~~--~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~ 362 (490)
.+..-++..|.-+ ..|+||||||+|++.. .|+.++..+ ....+++.-+|||.+||+.
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGt--KRfDSek~G--------------DREVQRTMLELLNQLDGFs 306 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGT--KRFDSEKAG--------------DREVQRTMLELLNQLDGFS 306 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcc--ccccccccc--------------cHHHHHHHHHHHHhhcCCC
Confidence 2334456666554 4799999999999976 444333321 4456889999999999997
Q ss_pred cCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHH
Q 011254 363 SSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQ 441 (490)
Q Consensus 363 s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~ 441 (490)
+. +.+-||++||+.+-|||||+|.||+|++|+||.|+.++|..|++.+-......-.-.+++|+..+ .|.+|+...+
T Consensus 307 s~--~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAV 384 (424)
T KOG0652|consen 307 SD--DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAV 384 (424)
T ss_pred Cc--cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheee
Confidence 75 66999999999999999999999999999999999999999988665443322223344444432 3778877666
Q ss_pred HH
Q 011254 442 LM 443 (490)
Q Consensus 442 l~ 443 (490)
|.
T Consensus 385 cV 386 (424)
T KOG0652|consen 385 CV 386 (424)
T ss_pred eh
Confidence 54
No 16
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.98 E-value=1.5e-31 Score=278.46 Aligned_cols=235 Identities=25% Similarity=0.325 Sum_probs=186.6
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC-
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR- 290 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~- 290 (490)
..+..+|++|+|.++++++|.+.+..++.+++.|..+|..+|+|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 3445789999999999999999999999999999999999999999999999999999999999999999999988762
Q ss_pred -----ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc
Q 011254 291 -----GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS 363 (490)
Q Consensus 291 -----~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s 363 (490)
+...++.+|..+. .|+||||||||.++..+. .... ........++..||+.+||+.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~--~~~~--------------~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRT--DSGT--------------SGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccc--cCCC--------------CccHHHHHHHHHHHHhccccCC
Confidence 3456777777654 689999999999975221 1100 0012335678889999999865
Q ss_pred CCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHH
Q 011254 364 SCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQL 442 (490)
Q Consensus 364 ~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l 442 (490)
. .++.||+|||+++.+|+|++||||||..|+|+.|+.++|.+|++.++.........++..++..+ +++++|+..++
T Consensus 268 ~--~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~ 345 (389)
T PRK03992 268 R--GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAIC 345 (389)
T ss_pred C--CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHH
Confidence 4 45999999999999999999999999999999999999999999988654332223455555543 59999999887
Q ss_pred Hc-------CCCHHHHHHHHHHHHHHHhh
Q 011254 443 MR-------NEVPEIALRELIQFLEIKRR 464 (490)
Q Consensus 443 ~~-------~~~~~~al~~l~~~l~~~~~ 464 (490)
.. ........+.+.++++..+.
T Consensus 346 ~eA~~~a~~~~~~~i~~~d~~~A~~~~~~ 374 (389)
T PRK03992 346 TEAGMFAIRDDRTEVTMEDFLKAIEKVMG 374 (389)
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHhc
Confidence 52 22334556667777666544
No 17
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=9.5e-32 Score=282.50 Aligned_cols=233 Identities=22% Similarity=0.300 Sum_probs=196.3
Q ss_pred CcceecccCCC--CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEE
Q 011254 205 DVWQSVNLDHP--ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVY 282 (490)
Q Consensus 205 ~~w~~~~~~~~--~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 282 (490)
...+.+.+..+ ..|++++|..++|+.+.+-+.++.++|..|...+.+.+.|+|||||||||||.||-|+|..+++.|+
T Consensus 651 ~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fi 730 (952)
T KOG0735|consen 651 LALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFI 730 (952)
T ss_pred HHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEE
Confidence 34566666555 4799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccc------CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHH
Q 011254 283 DLELTNL------RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGM 354 (490)
Q Consensus 283 ~l~~s~~------~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 354 (490)
.+...++ .++..+|.+|.++. +|||||+||+|.+.+.++.. ..+...+.+++|
T Consensus 731 svKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD-------------------sTGVTDRVVNQl 791 (952)
T KOG0735|consen 731 SVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD-------------------STGVTDRVVNQL 791 (952)
T ss_pred EecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC-------------------CCCchHHHHHHH
Confidence 9998876 57889999999886 79999999999998743321 134567889999
Q ss_pred HHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CC
Q 011254 355 LNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KV 433 (490)
Q Consensus 355 L~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~ 433 (490)
|..|||...- ++++|+++|.+||.|||||+||||+|++++.+.|++.+|.+|++..-+....+.+.+++.++..+ +|
T Consensus 792 LTelDG~Egl--~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~ 869 (952)
T KOG0735|consen 792 LTELDGAEGL--DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGF 869 (952)
T ss_pred HHhhcccccc--ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCC
Confidence 9999998765 45999999999999999999999999999999999999999998666544444556667776654 59
Q ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 011254 434 TPADVAEQLMRNEVPEIALRELIQFLEIKR 463 (490)
Q Consensus 434 tpa~i~~~l~~~~~~~~al~~l~~~l~~~~ 463 (490)
|+||++.+|... -+..+.+++.+..
T Consensus 870 tgADlq~ll~~A-----~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 870 TGADLQSLLYNA-----QLAAVHEILKRED 894 (952)
T ss_pred chhhHHHHHHHH-----HHHHHHHHHHhcC
Confidence 999999987642 3555556665544
No 18
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.98 E-value=9.4e-32 Score=284.71 Aligned_cols=206 Identities=26% Similarity=0.366 Sum_probs=162.2
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCc----------EE
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD----------VY 282 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~----------~~ 282 (490)
.++.+|++|+|.++.+++|.+.+..++.+++.|.+.|.++|+|+|||||||||||++++++|++++.+ ++
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999765 33
Q ss_pred EEecccc------CChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhH
Q 011254 283 DLELTNL------RGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVT 350 (490)
Q Consensus 283 ~l~~s~~------~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (490)
.+..+++ .+...++.+|..+. .|+||||||+|+++..+... .. +...+..
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~--~s----------------~d~e~~i 317 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG--VS----------------SDVETTV 317 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC--cc----------------chHHHHH
Confidence 3333332 23456777776553 58999999999997532210 00 1223567
Q ss_pred HHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhc
Q 011254 351 LSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEK 430 (490)
Q Consensus 351 ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~ 430 (490)
+++||+.|||+.+. .+++||+|||+++.|||||+||||||.+|+|++|+.+++++|+++|+... .++..++. ..
T Consensus 318 l~~LL~~LDgl~~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~~~l~---~~ 391 (512)
T TIGR03689 318 VPQLLSELDGVESL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LPLDADLA---EF 391 (512)
T ss_pred HHHHHHHhcccccC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CCchHHHH---Hh
Confidence 89999999999775 35999999999999999999999999999999999999999999998643 23333332 23
Q ss_pred cCCCHHHHHHHH
Q 011254 431 AKVTPADVAEQL 442 (490)
Q Consensus 431 ~~~tpa~i~~~l 442 (490)
.+.+.+++..++
T Consensus 392 ~g~~~a~~~al~ 403 (512)
T TIGR03689 392 DGDREATAAALI 403 (512)
T ss_pred cCCCHHHHHHHH
Confidence 345555554443
No 19
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=1.9e-31 Score=286.35 Aligned_cols=231 Identities=24% Similarity=0.361 Sum_probs=185.5
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc---
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL--- 289 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~--- 289 (490)
.+..+|++++|.+++|+++.+.+ .++.+++.|.+.|..+++|+|||||||||||++++++|++++.+++.++++++
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~-~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIV-DFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHH-HHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 45689999999999999998755 57899999999999999999999999999999999999999999999998765
Q ss_pred ---CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 290 ---RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 290 ---~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
.+...++.+|..+. .|+||||||||.++..+... .. ........++++||+.||++.+.
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~--~~--------------~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG--LG--------------GGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccC--cC--------------CccHHHHHHHHHHHhhhccccCC
Confidence 24567889998764 68999999999997532211 00 00223457889999999999765
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHH
Q 011254 365 CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLM 443 (490)
Q Consensus 365 ~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 443 (490)
.+++||+|||+++.||||++||||||.+|+++.|+.++|.+|++.++.........++..++..+ ++|++||..++.
T Consensus 192 --~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~ 269 (495)
T TIGR01241 192 --TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLN 269 (495)
T ss_pred --CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHH
Confidence 34999999999999999999999999999999999999999999998765443344566666654 599999988764
Q ss_pred c-------CCCHHHHHHHHHHHHHHH
Q 011254 444 R-------NEVPEIALRELIQFLEIK 462 (490)
Q Consensus 444 ~-------~~~~~~al~~l~~~l~~~ 462 (490)
+ ........+.+.++++..
T Consensus 270 eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 270 EAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 2 223334556666666654
No 20
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=2e-31 Score=278.69 Aligned_cols=214 Identities=25% Similarity=0.324 Sum_probs=175.1
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC-
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR- 290 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~- 290 (490)
..++.+|++|+|.++++++|.+.+..++.++++|..+|+.+++|+|||||||||||++|+++|++++.+++.+..+++.
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 4556899999999999999999999999999999999999999999999999999999999999999999999877762
Q ss_pred -----ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc
Q 011254 291 -----GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS 363 (490)
Q Consensus 291 -----~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s 363 (490)
+...++.+|..+. .|+||||||||.++..+. ..... .......++..||+.+||+..
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~--~~~sg--------------g~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRY--DATSG--------------GEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCC--CCCCc--------------ccHHHHHHHHHHHHHHhhhcc
Confidence 3345777776653 689999999999875221 11000 022335677899999999865
Q ss_pred CCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhc-cCCCHHHHHHHH
Q 011254 364 SCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEK-AKVTPADVAEQL 442 (490)
Q Consensus 364 ~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l 442 (490)
. .++.||+|||+++.||||++||||||.+|+|+.|+.++|.+|++.++.........++..++.. .++|+|||..+|
T Consensus 320 ~--~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~ 397 (438)
T PTZ00361 320 R--GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAIC 397 (438)
T ss_pred c--CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHH
Confidence 4 3589999999999999999999999999999999999999999998865433323345666543 369999999876
Q ss_pred H
Q 011254 443 M 443 (490)
Q Consensus 443 ~ 443 (490)
.
T Consensus 398 ~ 398 (438)
T PTZ00361 398 T 398 (438)
T ss_pred H
Confidence 4
No 21
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.4e-32 Score=256.41 Aligned_cols=217 Identities=24% Similarity=0.309 Sum_probs=180.8
Q ss_pred ecccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccc
Q 011254 209 SVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTN 288 (490)
Q Consensus 209 ~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~ 288 (490)
.|.-.+..|+.+++|-.++.+.|.+-++.++.+|+.|.++|+.+|+|+|||||||||||.+|+|+||..+.-|+.+-.++
T Consensus 167 ~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigse 246 (435)
T KOG0729|consen 167 QVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSE 246 (435)
T ss_pred EeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHH
Confidence 34455668999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred c------CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcc
Q 011254 289 L------RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG 360 (490)
Q Consensus 289 ~------~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg 360 (490)
+ .+...++++|.-+. .-||||+||||++.+ .|.... .+.....+.+.-+|++.+||
T Consensus 247 lvqkyvgegarmvrelf~martkkaciiffdeidaigg--arfddg--------------~ggdnevqrtmleli~qldg 310 (435)
T KOG0729|consen 247 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGG--ARFDDG--------------AGGDNEVQRTMLELINQLDG 310 (435)
T ss_pred HHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccC--ccccCC--------------CCCcHHHHHHHHHHHHhccC
Confidence 7 35567888888765 569999999999976 332221 11245568899999999999
Q ss_pred cccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCC---CCCchHHHHHhhhccCCCHHH
Q 011254 361 LWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGIT---EHPLFLEVEGLIEKAKVTPAD 437 (490)
Q Consensus 361 l~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~---~~~l~~~i~~l~~~~~~tpa~ 437 (490)
+... .++-|+++||+|+.|||||+||||+|++++|.+|+.+.|..|++.+.... ..--++-+.+|+.. -|+|+
T Consensus 311 fdpr--gnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpn--stgae 386 (435)
T KOG0729|consen 311 FDPR--GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPN--STGAE 386 (435)
T ss_pred CCCC--CCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCC--CcchH
Confidence 9765 45899999999999999999999999999999999999999887554322 22334556666655 78999
Q ss_pred HHHHHHcC
Q 011254 438 VAEQLMRN 445 (490)
Q Consensus 438 i~~~l~~~ 445 (490)
|..+|...
T Consensus 387 irsvctea 394 (435)
T KOG0729|consen 387 IRSVCTEA 394 (435)
T ss_pred HHHHHHHh
Confidence 99988643
No 22
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=5.3e-31 Score=295.07 Aligned_cols=209 Identities=23% Similarity=0.333 Sum_probs=177.7
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc----
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL---- 289 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~---- 289 (490)
+..+|++++|.+++|+.|.+.+..++.+++.|.++|..+++|+|||||||||||++|+++|++++.+++.++.+++
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred --CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 290 --RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 290 --~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
.++..++.+|..+. .||||||||||.++..+.. ... .......+++||..|||+...
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~--~~~----------------~~~~~~~~~~lL~~ldg~~~~- 588 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGA--RFD----------------TSVTDRIVNQLLTEMDGIQEL- 588 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCC--CCC----------------ccHHHHHHHHHHHHhhcccCC-
Confidence 34667999998774 6899999999999762211 100 223467889999999998664
Q ss_pred CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHH
Q 011254 366 GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQL 442 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l 442 (490)
.+++||+|||+++.||||++||||||.+|++++|+.++|.+||+.++.........++..++..+ ++|+|||..++
T Consensus 589 -~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~ 665 (733)
T TIGR01243 589 -SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVC 665 (733)
T ss_pred -CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHH
Confidence 45999999999999999999999999999999999999999999887655433334566666644 59999998875
No 23
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=7.7e-31 Score=248.38 Aligned_cols=206 Identities=20% Similarity=0.304 Sum_probs=175.0
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc---
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL--- 289 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~--- 289 (490)
....+||+++|+++.|+.- ..+..|+.+|+.|..+ -|+.+|||||||||||++|+|+|++.+.+++.+..+++
T Consensus 115 ~~~it~ddViGqEeAK~kc-rli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKC-RLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hccccHhhhhchHHHHHHH-HHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 3467899999999998865 4456789999988665 47899999999999999999999999999999998887
Q ss_pred ---CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 290 ---RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 290 ---~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
.+..++++++..+. .|||+||||+|++.- +|.-++- .......++.||..|||+.++
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaL--dRryQel----------------RGDVsEiVNALLTelDgi~en 252 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIAL--DRRYQEL----------------RGDVSEIVNALLTELDGIKEN 252 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhh--hhhHHHh----------------cccHHHHHHHHHHhccCcccC
Confidence 24567999998876 799999999999864 4433322 344567899999999999875
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHH
Q 011254 365 CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLM 443 (490)
Q Consensus 365 ~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 443 (490)
++++.|++||+|+.||||+.. ||...|+|.+|+.++|..|++.|...-..++...++.+...+ ++|+.||.+-++
T Consensus 253 --eGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvl 328 (368)
T COG1223 253 --EGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVL 328 (368)
T ss_pred --CceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHH
Confidence 559999999999999999999 999999999999999999999999877777777777777654 599999998776
Q ss_pred c
Q 011254 444 R 444 (490)
Q Consensus 444 ~ 444 (490)
+
T Consensus 329 K 329 (368)
T COG1223 329 K 329 (368)
T ss_pred H
Confidence 5
No 24
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=1.3e-30 Score=276.25 Aligned_cols=205 Identities=19% Similarity=0.254 Sum_probs=165.2
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc----
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL---- 289 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~---- 289 (490)
+..+|++|+|.+.+|+.+.+....|. ..+.+.|.++|+|+|||||||||||++|+|+|++++.+++.++++.+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 35689999999999999987665543 33567899999999999999999999999999999999999998765
Q ss_pred --CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 290 --RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 290 --~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
.++..++++|..+. .||||||||||.++....... ........++.||..|+..
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~------------------d~~~~~rvl~~lL~~l~~~---- 357 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG------------------DSGTTNRVLATFITWLSEK---- 357 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC------------------CchHHHHHHHHHHHHHhcC----
Confidence 24668889987654 799999999998865211100 0234567788899988853
Q ss_pred CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCC--chHHHHHhhhcc-CCCHHHHHHHH
Q 011254 366 GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHP--LFLEVEGLIEKA-KVTPADVAEQL 442 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~--l~~~i~~l~~~~-~~tpa~i~~~l 442 (490)
...++||+|||+++.||||++||||||..|+++.|+.++|.+|++.++...... -..++..++..+ +||+|||.+.+
T Consensus 358 ~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv 437 (489)
T CHL00195 358 KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSI 437 (489)
T ss_pred CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHH
Confidence 245999999999999999999999999999999999999999999999764322 134566666654 69999998876
Q ss_pred H
Q 011254 443 M 443 (490)
Q Consensus 443 ~ 443 (490)
.
T Consensus 438 ~ 438 (489)
T CHL00195 438 I 438 (489)
T ss_pred H
Confidence 4
No 25
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-31 Score=256.97 Aligned_cols=204 Identities=24% Similarity=0.328 Sum_probs=175.1
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc----
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL---- 289 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~---- 289 (490)
+...|++|+|.+..|+.|.+.+..+++.|++|..--+|| ||+|||||||||||.||+|+|.+.+-.|+.++.+++
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKW 206 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 206 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHH
Confidence 346789999999999999999999999999998766677 799999999999999999999999999999998887
Q ss_pred --CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 290 --RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 290 --~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
.++.-++.+|.-+. .||||||||||.+++.+.. . .+..++++-.+||..|.|+...
T Consensus 207 mGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e--n-----------------EseasRRIKTEfLVQMqGVG~d- 266 (439)
T KOG0739|consen 207 MGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE--N-----------------ESEASRRIKTEFLVQMQGVGND- 266 (439)
T ss_pred hccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC--C-----------------chHHHHHHHHHHHHhhhccccC-
Confidence 34445677776654 7999999999988763221 1 1445678888999999998653
Q ss_pred CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc-hHHHHHhhhcc-CCCHHHHHH
Q 011254 366 GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPL-FLEVEGLIEKA-KVTPADVAE 440 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa~i~~ 440 (490)
.++++|+++||-|+.||.|++| ||++.|++|+|...+|..||+..++...|.| ..++..|...+ +||++||.-
T Consensus 267 ~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisi 341 (439)
T KOG0739|consen 267 NDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISI 341 (439)
T ss_pred CCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEE
Confidence 4679999999999999999999 9999999999999999999999999998888 45788888765 599999853
No 26
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=3.8e-30 Score=280.62 Aligned_cols=213 Identities=27% Similarity=0.360 Sum_probs=175.5
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC-
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR- 290 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~- 290 (490)
.....+|++++|.++.|+++.+ +..++..++.|..+|..+++|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~e-iv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEE-VVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHH-HHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 3456799999999999998865 45688999999999999999999999999999999999999999999999988762
Q ss_pred -----ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc
Q 011254 291 -----GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS 363 (490)
Q Consensus 291 -----~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s 363 (490)
+...++.+|..+. .||||||||||++...++.. .. ..+.....+++.||..|||+..
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~--~~--------------~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAG--IG--------------GGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCC--CC--------------CCcHHHHHHHHHHHhhhccccC
Confidence 3467888888765 68999999999997522110 00 0123446789999999999876
Q ss_pred CCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHH
Q 011254 364 SCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQL 442 (490)
Q Consensus 364 ~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l 442 (490)
. .+++||+|||+++.||+||+||||||.+|+++.|+.++|..|++.++.........++..++..+ +++++|+.+++
T Consensus 319 ~--~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lv 396 (638)
T CHL00176 319 N--KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLL 396 (638)
T ss_pred C--CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHH
Confidence 5 35999999999999999999999999999999999999999999999764333344566666654 49999998876
Q ss_pred H
Q 011254 443 M 443 (490)
Q Consensus 443 ~ 443 (490)
-
T Consensus 397 n 397 (638)
T CHL00176 397 N 397 (638)
T ss_pred H
Confidence 4
No 27
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-29 Score=272.02 Aligned_cols=210 Identities=28% Similarity=0.390 Sum_probs=180.2
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc---
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL--- 289 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~--- 289 (490)
.+..+|++++|....|+.+.+.+..++.+++.|.+.|...++|+|||||||||||+||+|+|++++.+|+.++.+++
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ---CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 290 ---RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 290 ---~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
.++..++++|..+. .||||||||+|.++..++... .......+++||..|||+...
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~-------------------~~~~~r~~~~lL~~~d~~e~~ 376 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE-------------------DGSGRRVVGQLLTELDGIEKA 376 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC-------------------chHHHHHHHHHHHHhcCCCcc
Confidence 45788999999886 799999999999986332111 112257899999999999775
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCch--HHHHHhhhc-cCCCHHHHHHH
Q 011254 365 CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLF--LEVEGLIEK-AKVTPADVAEQ 441 (490)
Q Consensus 365 ~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~--~~i~~l~~~-~~~tpa~i~~~ 441 (490)
++++||+|||+|+.+|||++||||||..|+++.|+.++|..+++.++......+. -++..+++. .++|++||..+
T Consensus 377 --~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i 454 (494)
T COG0464 377 --EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAAL 454 (494)
T ss_pred --CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHH
Confidence 4599999999999999999999999999999999999999999999986554432 234555542 34999999988
Q ss_pred HH
Q 011254 442 LM 443 (490)
Q Consensus 442 l~ 443 (490)
+.
T Consensus 455 ~~ 456 (494)
T COG0464 455 VR 456 (494)
T ss_pred HH
Confidence 75
No 28
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.9e-30 Score=247.83 Aligned_cols=209 Identities=23% Similarity=0.310 Sum_probs=172.9
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC-----
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR----- 290 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~----- 290 (490)
.+|+.+.|.-++..++.+-+..++.+|+.+.++|+.+|.|+|||||||||||.+++++|..+|.+++.+..+.+.
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG 208 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG 208 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc
Confidence 489999999999999999999999999999999999999999999999999999999999999999999988873
Q ss_pred -ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCC
Q 011254 291 -GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGD 367 (490)
Q Consensus 291 -~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~ 367 (490)
+..-+++.|..+. .|||||+||||+..+-+ ..+... .+...+.||..|||.|||+... .
T Consensus 209 EsaRlIRemf~yA~~~~pciifmdeiDAigGRr--~se~Ts--------------~dreiqrTLMeLlnqmdgfd~l--~ 270 (388)
T KOG0651|consen 209 ESARLIRDMFRYAREVIPCIIFMDEIDAIGGRR--FSEGTS--------------SDREIQRTLMELLNQMDGFDTL--H 270 (388)
T ss_pred cHHHHHHHHHHHHhhhCceEEeehhhhhhccEE--eccccc--------------hhHHHHHHHHHHHHhhccchhc--c
Confidence 3445788888776 69999999999997622 111111 1445688999999999999775 3
Q ss_pred cEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCC---CCCchHHHHHhhhccCCCHHHHHHHHHc
Q 011254 368 ERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGIT---EHPLFLEVEGLIEKAKVTPADVAEQLMR 444 (490)
Q Consensus 368 ~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~---~~~l~~~i~~l~~~~~~tpa~i~~~l~~ 444 (490)
.+-+|+|||+|+.|||||+||||+|+.+++|.|+...|..+++-.-..- +.-.++.+..+.+. +.+|++.+.+..
T Consensus 271 rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~--f~gad~rn~~tE 348 (388)
T KOG0651|consen 271 RVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDG--FNGADLRNVCTE 348 (388)
T ss_pred cccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhc--cChHHHhhhccc
Confidence 4889999999999999999999999999999999999988776332211 12225566677765 888887777654
No 29
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-29 Score=252.05 Aligned_cols=222 Identities=20% Similarity=0.309 Sum_probs=182.7
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhC-CCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCC--
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRG-- 291 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~-- 291 (490)
..+|++|+|.+.+++.+.+.+..++.+|++|...+ ..+++|+|||||||||||++|+|+|++.|.+++.+..+.+.+
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 36899999999999999999999999999997433 256799999999999999999999999999999999988732
Q ss_pred ----hHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 292 ----NMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 292 ----~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
+.-++.+|.-+. +||||||||+|.++..+ + ..+ .......-++|...+||+.+..
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~-s~d-----------------HEa~a~mK~eFM~~WDGl~s~~ 228 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-R-STD-----------------HEATAMMKNEFMALWDGLSSKD 228 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-c-cch-----------------HHHHHHHHHHHHHHhccccCCC
Confidence 334555555554 79999999999998744 2 111 2334566788999999999987
Q ss_pred CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHHc
Q 011254 366 GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLMR 444 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~ 444 (490)
+..++|+++||+|.+||.|++| ||...++++.|+.++|++|++-+|..+...-.-++.+++..+ +||+.|+.+.|..
T Consensus 229 ~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~ 306 (386)
T KOG0737|consen 229 SERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRL 306 (386)
T ss_pred CceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHH
Confidence 7779999999999999999999 999999999999999999999999877555444566666544 5999999998765
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 011254 445 NEVPEIALRELIQFLEIK 462 (490)
Q Consensus 445 ~~~~~~al~~l~~~l~~~ 462 (490)
+|+..+.++++..
T Consensus 307 -----Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 307 -----AALRPIRELLVSE 319 (386)
T ss_pred -----HhHhHHHHHHHhc
Confidence 3666777777664
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=1.5e-28 Score=254.35 Aligned_cols=214 Identities=25% Similarity=0.318 Sum_probs=170.3
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC-
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR- 290 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~- 290 (490)
-.+..+|++|+|.++++++|.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+++.+..+.+.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999988766541
Q ss_pred -----ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc
Q 011254 291 -----GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS 363 (490)
Q Consensus 291 -----~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s 363 (490)
+...++.+|..+. .|+||||||+|.++..+. .... ........++..+|+.+|++..
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~--~~~~--------------~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRT--DSGT--------------SGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccc--cCCC--------------CccHHHHHHHHHHHHHhhCCCC
Confidence 2234566666543 689999999999865221 1100 0022345678889999998754
Q ss_pred CCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHH
Q 011254 364 SCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQL 442 (490)
Q Consensus 364 ~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l 442 (490)
. .++.||+|||+++.+|++++||||||..|+++.|+.++|..|++.++.........++..++..+ +++++|+..++
T Consensus 259 ~--~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~ 336 (364)
T TIGR01242 259 R--GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAIC 336 (364)
T ss_pred C--CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHH
Confidence 3 35899999999999999999999999999999999999999999888654322222344554433 59999998775
Q ss_pred H
Q 011254 443 M 443 (490)
Q Consensus 443 ~ 443 (490)
.
T Consensus 337 ~ 337 (364)
T TIGR01242 337 T 337 (364)
T ss_pred H
Confidence 4
No 31
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=1.7e-28 Score=246.06 Aligned_cols=198 Identities=17% Similarity=0.146 Sum_probs=147.1
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc---
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL--- 289 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~--- 289 (490)
....+|+++.|.-.+-....+.+...+ .+.+....|+.+|+|++||||||||||++|+|+|+++|.+++.++.+++
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi-~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHI-AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHH-HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 445667777444333333333222111 2334455788999999999999999999999999999999999999887
Q ss_pred ---CChHHHHHHHHhcc-------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhc
Q 011254 290 ---RGNMELRNLLIATE-------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFID 359 (490)
Q Consensus 290 ---~~~~~l~~l~~~~~-------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~id 359 (490)
+++..++++|..+. +||||||||||++++.++ ..+. ....+....+||+.+|
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~--~~~~----------------tv~~qiV~~tLLnl~D 249 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFG--TTQY----------------TVNNQMVNGTLMNIAD 249 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCC--CCCc----------------chHHHHHHHHHHHHhc
Confidence 45678999998764 599999999999986332 1100 1123444578999988
Q ss_pred cc--------c--cCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhh
Q 011254 360 GL--------W--SSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIE 429 (490)
Q Consensus 360 gl--------~--s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~ 429 (490)
++ | ......++||+|||+|+.|||||+||||||..+ ..|+.++|..|++.++...+.+ ..++..|++
T Consensus 250 ~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~ 326 (413)
T PLN00020 250 NPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVD 326 (413)
T ss_pred CCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHH
Confidence 64 4 112346899999999999999999999999965 5899999999999998776443 577888887
Q ss_pred ccC
Q 011254 430 KAK 432 (490)
Q Consensus 430 ~~~ 432 (490)
.+.
T Consensus 327 ~f~ 329 (413)
T PLN00020 327 TFP 329 (413)
T ss_pred cCC
Confidence 653
No 32
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=1.6e-28 Score=281.17 Aligned_cols=177 Identities=16% Similarity=0.173 Sum_probs=139.4
Q ss_pred cHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCC-----------------------------
Q 011254 241 RKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRG----------------------------- 291 (490)
Q Consensus 241 ~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~----------------------------- 291 (490)
.+..+.++|..+|+|+||+||||||||.||+|+|++.++|++.++++++..
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 456678899999999999999999999999999999999999998876531
Q ss_pred --------------------hHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhh
Q 011254 292 --------------------NMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQV 349 (490)
Q Consensus 292 --------------------~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (490)
...++.+|..|. +||||+|||||++.. ......
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~-------------------------~ds~~l 1752 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNV-------------------------NESNYL 1752 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCC-------------------------Ccccee
Confidence 012666777664 799999999999853 111235
Q ss_pred HHHHHHHHhcccccC-CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCch---HHHH
Q 011254 350 TLSGMLNFIDGLWSS-CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLF---LEVE 425 (490)
Q Consensus 350 ~ls~LL~~idgl~s~-~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~---~~i~ 425 (490)
++++||+.|||.... ...+++||+|||+|+.|||||+||||||++|+++.|+..+|++++...+...+..+. .++.
T Consensus 1753 tL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~ 1832 (2281)
T CHL00206 1753 SLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTN 1832 (2281)
T ss_pred hHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHH
Confidence 689999999987432 235699999999999999999999999999999999999999887754322222221 2355
Q ss_pred Hhhhcc-CCCHHHHHHHH
Q 011254 426 GLIEKA-KVTPADVAEQL 442 (490)
Q Consensus 426 ~l~~~~-~~tpa~i~~~l 442 (490)
.++..+ ++|+||+++++
T Consensus 1833 ~LA~~T~GfSGADLanLv 1850 (2281)
T CHL00206 1833 GFGSITMGSNARDLVALT 1850 (2281)
T ss_pred HHHHhCCCCCHHHHHHHH
Confidence 565544 69999999886
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=7.5e-28 Score=264.90 Aligned_cols=211 Identities=22% Similarity=0.337 Sum_probs=172.6
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc----
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL---- 289 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~---- 289 (490)
...+|++++|.+..++++.+.+ .++..+..|..+|...++|+||+||||||||++++++|++++.+++.++++++
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~-~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHH-HHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 3467999999999999987655 46778888999999999999999999999999999999999999999998765
Q ss_pred --CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 290 --RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 290 --~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
.+...++.+|..+. .||||||||||.++..+... .. ........++++||..|||+.+..
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~--~~--------------g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG--LG--------------GGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCC--CC--------------CCchHHHHHHHHHHHhhhcccCCC
Confidence 24567888887764 68999999999997522110 00 012334678999999999997754
Q ss_pred CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhc-cCCCHHHHHHHHH
Q 011254 366 GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEK-AKVTPADVAEQLM 443 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 443 (490)
.++||+|||+++.||||++||||||++|++++|+.++|.+|++.++.........++..++.. .++|+|||.+++.
T Consensus 290 --~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~ 366 (644)
T PRK10733 290 --GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 366 (644)
T ss_pred --CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHH
Confidence 499999999999999999999999999999999999999999999976543333345556654 4699999999874
No 34
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.95 E-value=3.6e-28 Score=204.06 Aligned_cols=97 Identities=39% Similarity=0.728 Sum_probs=93.2
Q ss_pred hCCHHHHHHHHHHHHHHhc-ccCCceEEEEeecCCCCCccHHHHHHHHHhCCCCCcccceeEeecCCCCCceEEeccCCC
Q 011254 35 YLPFEVRAYFAVKLKSLLA-RFSSELTLVINEYDDGLNQNVLFKAAKLYLEPRIPPYVKRIKINLPNKETKISCSVEKDE 113 (490)
Q Consensus 35 ~~P~~l~~~~~~~~~~l~~-~~~~~~ti~i~e~~~~~~~N~ly~a~~~YL~t~~~~~~~rl~~~~~~~~~~~~~~~~~~~ 113 (490)
|||++||+++.+++++++. +++||+||+|+|+ +|+.+|++|+||++||+++++++++||++++++++++++|+|++||
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~-~g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~e 79 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEF-DGLSRNELYDAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDGE 79 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeC-CCccccHHHHHHHHHHhhccCcccceeeecccCCCCceEEecCCCC
Confidence 6899999999999988876 8999999999999 7999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCeEEEEEEEEec
Q 011254 114 EIVDVFNGVQLKWRFSSKQ 132 (490)
Q Consensus 114 ~v~D~f~G~~~~w~~~~~~ 132 (490)
+|+|+|+||++||.+++++
T Consensus 80 ~V~D~F~Gv~v~W~~~~~e 98 (98)
T PF14363_consen 80 EVVDVFEGVKVWWSSVCTE 98 (98)
T ss_pred EEEEEECCEEEEEEEEccC
Confidence 9999999999999998763
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.4e-26 Score=254.29 Aligned_cols=212 Identities=24% Similarity=0.312 Sum_probs=174.2
Q ss_pred cccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-----cCcEEEE
Q 011254 210 VNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDL 284 (490)
Q Consensus 210 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l 284 (490)
...+.-.+|++|+|.+..+..+.+-+-.++.+|+.|..+++.+|||+|||||||||||++|+|+|..+ +..++.-
T Consensus 256 ~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmr 335 (1080)
T KOG0732|consen 256 LSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMR 335 (1080)
T ss_pred hhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhh
Confidence 34455678999999999999999999999999999999999999999999999999999999999988 2344433
Q ss_pred ecccc------CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHH
Q 011254 285 ELTNL------RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLN 356 (490)
Q Consensus 285 ~~s~~------~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 356 (490)
...+. ..+.+++-+|..+. +|+|||+||||.+.+.+.... .......++.||.
T Consensus 336 kgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq-------------------Eqih~SIvSTLLa 396 (1080)
T KOG0732|consen 336 KGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ-------------------EQIHASIVSTLLA 396 (1080)
T ss_pred cCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH-------------------HHhhhhHHHHHHH
Confidence 33332 35678999999886 799999999999987554322 2334678899999
Q ss_pred HhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHH-HHhhhc-cCCC
Q 011254 357 FIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEV-EGLIEK-AKVT 434 (490)
Q Consensus 357 ~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i-~~l~~~-~~~t 434 (490)
.|||+.+. ..++||+|||+++.+||||+||||||..++||+|+.++|.+|+...-..-..++.... ..+++. .++-
T Consensus 397 LmdGldsR--gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~ 474 (1080)
T KOG0732|consen 397 LMDGLDSR--GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYG 474 (1080)
T ss_pred hccCCCCC--CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccc
Confidence 99999886 4599999999999999999999999999999999999999999866665556665444 334332 3588
Q ss_pred HHHHHHHH
Q 011254 435 PADVAEQL 442 (490)
Q Consensus 435 pa~i~~~l 442 (490)
+||+..+|
T Consensus 475 gaDlkaLC 482 (1080)
T KOG0732|consen 475 GADLKALC 482 (1080)
T ss_pred hHHHHHHH
Confidence 88887776
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=5e-26 Score=255.01 Aligned_cols=208 Identities=26% Similarity=0.373 Sum_probs=171.1
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC---
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR--- 290 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~--- 290 (490)
+..+|++|+|.+++++.|.+.+..++.+++.|..+|..+++|+|||||||||||+++++||++++.+++.++++++.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999987652
Q ss_pred ---ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 291 ---GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 291 ---~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
+...++.+|..+. .|+||||||||.++..++... .......++.|++.||++...
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-------------------~~~~~~~~~~Ll~~ld~l~~~- 312 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-------------------GEVEKRVVAQLLTLMDGLKGR- 312 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-------------------chHHHHHHHHHHHHhhccccC-
Confidence 3456888887764 689999999999875221100 122356788999999998664
Q ss_pred CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhc-cCCCHHHHHHHH
Q 011254 366 GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEK-AKVTPADVAEQL 442 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l 442 (490)
..++||+|||+++.||+++.||||||.+|+++.|+.++|.+|++.+..........++..+++. .+++++++..++
T Consensus 313 -~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~ 389 (733)
T TIGR01243 313 -GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALA 389 (733)
T ss_pred -CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHH
Confidence 3589999999999999999999999999999999999999999977754332222334555543 359999997764
No 37
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-25 Score=236.68 Aligned_cols=207 Identities=24% Similarity=0.333 Sum_probs=180.8
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc----
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL---- 289 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~---- 289 (490)
++.+ ++++|.......+.+.+..++.++..|...|.++|+|+|+|||||||||.+++|+|++.+..++.++..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6777 89999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred --CChHHHHHHHHhcc--C-CeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 290 --RGNMELRNLLIATE--N-KSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 290 --~~~~~l~~l~~~~~--~-~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
.+++.|++.|..+. + |+||||||+|.+++.+.... ...+.+.++|+..|||+.+.
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~--------------------~~e~Rv~sqlltL~dg~~~~ 318 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGAD--------------------DVESRVVSQLLTLLDGLKPD 318 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccc--------------------hHHHHHHHHHHHHHhhCcCc
Confidence 56889999999875 4 99999999999987433211 13577899999999999754
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhc-cCCCHHHHHHHHH
Q 011254 365 CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEK-AKVTPADVAEQLM 443 (490)
Q Consensus 365 ~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 443 (490)
..+|||+|||+|+.|||++.| ||||..++++.|+..+|.++++.+....++.-..++..++.. .+|++||++..+-
T Consensus 319 --~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ 395 (693)
T KOG0730|consen 319 --AKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCR 395 (693)
T ss_pred --CcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHH
Confidence 459999999999999999999 999999999999999999999988877666644566666654 5799999998875
Q ss_pred c
Q 011254 444 R 444 (490)
Q Consensus 444 ~ 444 (490)
.
T Consensus 396 e 396 (693)
T KOG0730|consen 396 E 396 (693)
T ss_pred H
Confidence 3
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=7.3e-26 Score=232.21 Aligned_cols=209 Identities=22% Similarity=0.277 Sum_probs=179.8
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC---
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR--- 290 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~--- 290 (490)
.+..|++++|....|+.+.+.+..++.+++.|..+ .++.+|+||+||||||||+|++|||.+.+..|+.+..+++.
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~ 226 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKY 226 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhc
Confidence 44789999999999999999999999999999876 45668999999999999999999999999999999998872
Q ss_pred ---ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 291 ---GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 291 ---~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
++.-++.+|.-+. +|+||||||||.++..+ .... ...+.....++|..++|..+..
T Consensus 227 ~Ge~eK~vralf~vAr~~qPsvifidEidslls~R--s~~e-----------------~e~srr~ktefLiq~~~~~s~~ 287 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR--SDNE-----------------HESSRRLKTEFLLQFDGKNSAP 287 (428)
T ss_pred cChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc--CCcc-----------------cccchhhhhHHHhhhccccCCC
Confidence 3455677776554 79999999999998743 2111 4455678889999999999988
Q ss_pred CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCch-HHHHHhhhcc-CCCHHHHHHHHH
Q 011254 366 GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLF-LEVEGLIEKA-KVTPADVAEQLM 443 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~-~~i~~l~~~~-~~tpa~i~~~l~ 443 (490)
.+.++||+|||.|+.+|.|++| ||-..+++|.|+.++|..+|++++....+.+. .+++.+++-+ +||..||.++|.
T Consensus 288 ~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~k 365 (428)
T KOG0740|consen 288 DDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCK 365 (428)
T ss_pred CCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHH
Confidence 8889999999999999999999 99999999999999999999999988866664 6777777654 599999999875
Q ss_pred c
Q 011254 444 R 444 (490)
Q Consensus 444 ~ 444 (490)
.
T Consensus 366 e 366 (428)
T KOG0740|consen 366 E 366 (428)
T ss_pred H
Confidence 4
No 39
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.2e-25 Score=228.37 Aligned_cols=212 Identities=23% Similarity=0.342 Sum_probs=155.4
Q ss_pred cCCCCCccccc--cChhHHHHH-HHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-cEEEEecc
Q 011254 212 LDHPATFDTLA--MDSDMKQMI-MDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-DVYDLELT 287 (490)
Q Consensus 212 ~~~~~~f~~l~--g~~~~k~~i-~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-~~~~l~~s 287 (490)
.++.-.|++++ |.+..-..| .+++..-+-.|+.-.++|+++-+|+|||||||||||.+|+.|...|+. +--.++..
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 34445677763 333322222 222222223688899999999999999999999999999999999975 34456666
Q ss_pred cc------CChHHHHHHHHhcc----------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHH
Q 011254 288 NL------RGNMELRNLLIATE----------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTL 351 (490)
Q Consensus 288 ~~------~~~~~l~~l~~~~~----------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 351 (490)
++ +++.++|++|..+. .-.||++||||+++..+..... ........+
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g-----------------~TGVhD~VV 354 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAG-----------------STGVHDTVV 354 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCC-----------------CCCccHHHH
Confidence 65 57889999998874 2369999999999863322111 134567789
Q ss_pred HHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCC-CC-Cc--hHHHHHh
Q 011254 352 SGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGIT-EH-PL--FLEVEGL 427 (490)
Q Consensus 352 s~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~-~~-~l--~~~i~~l 427 (490)
++||.-|||+..- ++++||+-||++|.+|.||+||||+..++++++|++..|.+|++.+-..- ++ .+ .-++.++
T Consensus 355 NQLLsKmDGVeqL--NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~el 432 (744)
T KOG0741|consen 355 NQLLSKMDGVEQL--NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKEL 432 (744)
T ss_pred HHHHHhcccHHhh--hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHH
Confidence 9999999999775 45999999999999999999999999999999999999998887544321 11 11 1234444
Q ss_pred hhcc-CCCHHHHHHHH
Q 011254 428 IEKA-KVTPADVAEQL 442 (490)
Q Consensus 428 ~~~~-~~tpa~i~~~l 442 (490)
+..+ .||+||+..++
T Consensus 433 A~lTKNfSGAEleglV 448 (744)
T KOG0741|consen 433 AALTKNFSGAELEGLV 448 (744)
T ss_pred HHHhcCCchhHHHHHH
Confidence 4433 39999997765
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=9.6e-23 Score=203.67 Aligned_cols=227 Identities=17% Similarity=0.205 Sum_probs=172.6
Q ss_pred EecccchHHHHHHhHHHHHHhchhhhcccceEEEEeecccccc-CCCCCcceecccCCCCCccccccChhHHHHHHHHHH
Q 011254 158 SFHKKYKQVVMDSYIPHVLKQSKETSTQKKTLKLFTLRYDRMH-GMRGDVWQSVNLDHPATFDTLAMDSDMKQMIMDDLE 236 (490)
Q Consensus 158 ~f~~~~~~~v~~~yl~~v~~~~~~i~~~~~~~~l~~~~~~~~~-~~~~~~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~ 236 (490)
.|.++.-.+|+++|+..++-+...|+...+....|+...+... ...+ -..........|+.|++.+.+++.|.+...
T Consensus 295 vYTtkeg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~--~~~~s~~gk~pl~~ViL~psLe~Rie~lA~ 372 (630)
T KOG0742|consen 295 VYTTKEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQG--SRSASSRGKDPLEGVILHPSLEKRIEDLAI 372 (630)
T ss_pred heeccccchhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhh--hHhhhhcCCCCcCCeecCHHHHHHHHHHHH
Confidence 3566777889999999999999999988887766766443211 1111 112223344569999999999999865443
Q ss_pred HHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc-----CChHHHHHHHHhcc---CCeEE
Q 011254 237 RFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL-----RGNMELRNLLIATE---NKSIL 308 (490)
Q Consensus 237 ~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~-----~~~~~l~~l~~~~~---~~sIl 308 (490)
.- .+ .+....+-|.+|||||||||||++|+-||...|+++-.+...++ .....++++|..+. ++-+|
T Consensus 373 aT-aN----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLll 447 (630)
T KOG0742|consen 373 AT-AN----TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLL 447 (630)
T ss_pred Hh-cc----cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEE
Confidence 22 22 23345666899999999999999999999999999998888887 34578899998875 56799
Q ss_pred EEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCC
Q 011254 309 VVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRP 388 (490)
Q Consensus 309 ~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRp 388 (490)
||||.|+++..+. ..-+ +...+..|+.||-..-. . ...+++|.+||+|++||.|+-.
T Consensus 448 FIDEADAFLceRn--ktym----------------SEaqRsaLNAlLfRTGd-q---SrdivLvlAtNrpgdlDsAV~D- 504 (630)
T KOG0742|consen 448 FIDEADAFLCERN--KTYM----------------SEAQRSALNALLFRTGD-Q---SRDIVLVLATNRPGDLDSAVND- 504 (630)
T ss_pred EehhhHHHHHHhc--hhhh----------------cHHHHHHHHHHHHHhcc-c---ccceEEEeccCCccchhHHHHh-
Confidence 9999999987333 2222 34457788888755322 2 2458899999999999999999
Q ss_pred CceeeEEEeCCCCHHHHHHHHHHhhCC
Q 011254 389 GRMDVHIHMSYCTSCGFKMLASSYLGI 415 (490)
Q Consensus 389 GR~d~~I~~~~p~~~~r~~L~~~~l~~ 415 (490)
|+|..|+||+|..++|.+|+..||..
T Consensus 505 -Ride~veFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 505 -RIDEVVEFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred -hhhheeecCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999998864
No 41
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.84 E-value=9.4e-21 Score=166.33 Aligned_cols=123 Identities=32% Similarity=0.547 Sum_probs=100.9
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC------ChHHHHHHHHhcc--C-CeEEEEeccchhhhhhhhHhhh
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR------GNMELRNLLIATE--N-KSILVVEDIDCSIELQDRFAKA 326 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~------~~~~l~~l~~~~~--~-~sIl~iDdiD~l~~~~~r~~~~ 326 (490)
+|||||||||||++|+++|+.++.+++.+++..+. ....+..+|..+. . |+||+|||+|.+.... ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 68999999999999999999999999999998874 3456778887763 4 8999999999997632 000
Q ss_pred hhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCC
Q 011254 327 KATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSY 399 (490)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~ 399 (490)
........+..|++.++..... ...++||+|||.++.+|++++| |||+.+|++|.
T Consensus 78 ----------------~~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 ----------------SSSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp ----------------SSHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ----------------cccccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 0334567788999999988664 3459999999999999999999 99999999974
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.83 E-value=8.4e-20 Score=172.88 Aligned_cols=190 Identities=17% Similarity=0.197 Sum_probs=125.9
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCCh
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGN 292 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~ 292 (490)
-.|.+|++++|+++++..+.-.+.....+. ..-..+||||||||||||||+.||++++.++..++...+...
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA 89 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH
Confidence 468899999999999988755554332211 122469999999999999999999999999999998888778
Q ss_pred HHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccc-----cCCC-
Q 011254 293 MELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLW-----SSCG- 366 (490)
Q Consensus 293 ~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~-----s~~~- 366 (490)
.++..++.....+.|||||||+.+-. . .-.-|+..|+... ..+.
T Consensus 90 ~dl~~il~~l~~~~ILFIDEIHRlnk----~--------------------------~qe~LlpamEd~~idiiiG~g~~ 139 (233)
T PF05496_consen 90 GDLAAILTNLKEGDILFIDEIHRLNK----A--------------------------QQEILLPAMEDGKIDIIIGKGPN 139 (233)
T ss_dssp HHHHHHHHT--TT-EEEECTCCC--H----H--------------------------HHHHHHHHHHCSEEEEEBSSSSS
T ss_pred HHHHHHHHhcCCCcEEEEechhhccH----H--------------------------HHHHHHHHhccCeEEEEeccccc
Confidence 89999999988999999999998832 1 1122444444211 0000
Q ss_pred --------CcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHH-HHhhhccCCCHHH
Q 011254 367 --------DERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEV-EGLIEKAKVTPAD 437 (490)
Q Consensus 367 --------~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i-~~l~~~~~~tpa~ 437 (490)
....+|++|++...|.+.|.. ||....++.+.+.++..+|+++.....+.++.++. .+++....-||.-
T Consensus 140 ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRi 217 (233)
T PF05496_consen 140 ARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRI 217 (233)
T ss_dssp -BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHH
T ss_pred cceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHH
Confidence 236799999999999999999 99999999999999999999988877777776553 4455555567664
Q ss_pred HHHHH
Q 011254 438 VAEQL 442 (490)
Q Consensus 438 i~~~l 442 (490)
.-++|
T Consensus 218 Anrll 222 (233)
T PF05496_consen 218 ANRLL 222 (233)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 43
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=6.7e-19 Score=172.06 Aligned_cols=178 Identities=22% Similarity=0.306 Sum_probs=136.4
Q ss_pred ccccccChhHHHHHHHHHHHHHHcHHHHHHh-CCCCCcceeeeCCCCCcHHHHHHHHHHhcc---------CcEEEEecc
Q 011254 218 FDTLAMDSDMKQMIMDDLERFVKRKEFYRNV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLN---------FDVYDLELT 287 (490)
Q Consensus 218 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~-g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---------~~~~~l~~s 287 (490)
|++|+-+.++|+++.......+...+.-... -+.|.|-+|||||||||||+|++|+|+.+. ..++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 6788999999999998877665533321111 257899999999999999999999999883 345667766
Q ss_pred cc------CChHHHHHHHHhcc-------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHH
Q 011254 288 NL------RGNMELRNLLIATE-------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGM 354 (490)
Q Consensus 288 ~~------~~~~~l~~l~~~~~-------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 354 (490)
.+ ++..-+.++|.+.. .-..++|||++.+...+...... ++....-+.++.|
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~---------------~EpsDaIRvVNal 285 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSR---------------NEPSDAIRVVNAL 285 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcC---------------CCCchHHHHHHHH
Confidence 55 34556667776653 23467899999997644221111 1144556789999
Q ss_pred HHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 355 LNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 355 L~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
|..||.+.... +++|.+|+|-.+.||.|+.. |-|.+.++++|+.+++..|++..+.
T Consensus 286 LTQlDrlK~~~--NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 286 LTQLDRLKRYP--NVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred HHHHHHhccCC--CEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence 99999998764 49999999999999999999 9999999999999999999987764
No 44
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.77 E-value=3.3e-17 Score=162.09 Aligned_cols=177 Identities=14% Similarity=0.216 Sum_probs=126.2
Q ss_pred ccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCC---cceeeeCCCCCcHHHHHHHHHHhc-------cCcEEEEecc
Q 011254 218 FDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWK---RGYLLYGPPGTGKSSLIAAMANYL-------NFDVYDLELT 287 (490)
Q Consensus 218 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~---rg~LL~GPpGtGKT~la~aiA~~l-------~~~~~~l~~s 287 (490)
+++++|.+++|++|.+.+...... ....+.|...+ .++|||||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 678999999999998877654443 44455666433 358999999999999999999875 2356667766
Q ss_pred ccC------ChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccc
Q 011254 288 NLR------GNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGL 361 (490)
Q Consensus 288 ~~~------~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl 361 (490)
++. ....++.+|..+ .++||||||+|.+.. +. . .......+..|+..|+..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a-~~~VL~IDE~~~L~~--~~--~------------------~~~~~~~i~~Ll~~~e~~ 140 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYSLAR--GG--E------------------KDFGKEAIDTLVKGMEDN 140 (261)
T ss_pred HhhhhhccchHHHHHHHHHhc-cCCEEEEechhhhcc--CC--c------------------cchHHHHHHHHHHHHhcc
Confidence 552 245567777665 467999999998842 10 0 112244567788888764
Q ss_pred ccCCCCcEEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHH
Q 011254 362 WSSCGDERIIIFTTNHKD-----RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEV 424 (490)
Q Consensus 362 ~s~~~~~~iiI~TTN~~~-----~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i 424 (490)
. ..+++|++++..+ .++|+|.+ ||+.+|+|+.++.+++..|+++++......+.++.
T Consensus 141 ~----~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a 202 (261)
T TIGR02881 141 R----NEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA 202 (261)
T ss_pred C----CCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH
Confidence 2 3356666654432 37899998 99999999999999999999999876554554443
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.76 E-value=2.1e-17 Score=168.82 Aligned_cols=189 Identities=18% Similarity=0.215 Sum_probs=140.6
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChH
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNM 293 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~ 293 (490)
.|.+|++++|.++.++.+...+...... ...++++|||||||||||++|+++|++++.++...+...+....
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~ 91 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPG 91 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChH
Confidence 4789999999999999887766543221 23456899999999999999999999999999888777676777
Q ss_pred HHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccc-----cC----
Q 011254 294 ELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLW-----SS---- 364 (490)
Q Consensus 294 ~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~-----s~---- 364 (490)
.+..++.....++||||||||.+..... ..|.+.|+... ..
T Consensus 92 ~l~~~l~~l~~~~vl~IDEi~~l~~~~~------------------------------e~l~~~~e~~~~~~~l~~~~~~ 141 (328)
T PRK00080 92 DLAAILTNLEEGDVLFIDEIHRLSPVVE------------------------------EILYPAMEDFRLDIMIGKGPAA 141 (328)
T ss_pred HHHHHHHhcccCCEEEEecHhhcchHHH------------------------------HHHHHHHHhcceeeeeccCccc
Confidence 8888888888899999999998742110 01122222110 00
Q ss_pred -----CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHH-HHHhhhccCCCHHHH
Q 011254 365 -----CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLE-VEGLIEKAKVTPADV 438 (490)
Q Consensus 365 -----~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~-i~~l~~~~~~tpa~i 438 (490)
.-....+|++||++..++++|.+ ||+..++|+.++.+++.+++++........+.++ +..++...+-+|..+
T Consensus 142 ~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a 219 (328)
T PRK00080 142 RSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIA 219 (328)
T ss_pred cceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHH
Confidence 00226789999999999999988 9999999999999999999998887765555443 455566666666655
Q ss_pred HHHH
Q 011254 439 AEQL 442 (490)
Q Consensus 439 ~~~l 442 (490)
...|
T Consensus 220 ~~~l 223 (328)
T PRK00080 220 NRLL 223 (328)
T ss_pred HHHH
Confidence 5554
No 46
>CHL00181 cbbX CbbX; Provisional
Probab=99.75 E-value=1.1e-17 Score=167.51 Aligned_cols=175 Identities=17% Similarity=0.234 Sum_probs=128.2
Q ss_pred cccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCC-cc--eeeeCCCCCcHHHHHHHHHHhcc-------CcEEEEeccc
Q 011254 219 DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWK-RG--YLLYGPPGTGKSSLIAAMANYLN-------FDVYDLELTN 288 (490)
Q Consensus 219 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~-rg--~LL~GPpGtGKT~la~aiA~~l~-------~~~~~l~~s~ 288 (490)
++++|.+++|++|.+.+. ++..+..+.+.|...+ .| +||+||||||||++|+++|..+. .+++.++.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~-~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAA-LLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHH-HHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 479999999999988664 4556677788887655 34 79999999999999999999762 2577777655
Q ss_pred cC------ChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccc
Q 011254 289 LR------GNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLW 362 (490)
Q Consensus 289 ~~------~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~ 362 (490)
+. +......++..+ .++||||||+|.+...+. ........+..|+..|+...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~~~~---------------------~~~~~~e~~~~L~~~me~~~ 159 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYKPDN---------------------ERDYGSEAIEILLQVMENQR 159 (287)
T ss_pred HHHHHhccchHHHHHHHHHc-cCCEEEEEccchhccCCC---------------------ccchHHHHHHHHHHHHhcCC
Confidence 41 233455666665 457999999998753100 01233556778888887532
Q ss_pred cCCCCcEEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchH
Q 011254 363 SSCGDERIIIFTTNHKD-----RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFL 422 (490)
Q Consensus 363 s~~~~~~iiI~TTN~~~-----~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~ 422 (490)
.+++||++++... .++|+|.+ ||+.+|+|+.++.+++.+|+..++......+.+
T Consensus 160 ----~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~ 218 (287)
T CHL00181 160 ----DDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTP 218 (287)
T ss_pred ----CCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCCh
Confidence 3477778776422 34699999 999999999999999999999999765544443
No 47
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.74 E-value=2.5e-17 Score=164.77 Aligned_cols=173 Identities=16% Similarity=0.218 Sum_probs=128.5
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhCCCC---CcceeeeCCCCCcHHHHHHHHHHhcc-------CcEEEEecccc
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAW---KRGYLLYGPPGTGKSSLIAAMANYLN-------FDVYDLELTNL 289 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~---~rg~LL~GPpGtGKT~la~aiA~~l~-------~~~~~l~~s~~ 289 (490)
.++|.+++|++|.+.+.. +..++.+.+.|... ..++||+||||||||++|+++|..+. -+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999876654 66777888888764 34799999999999999999998773 26777776554
Q ss_pred C------ChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc
Q 011254 290 R------GNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS 363 (490)
Q Consensus 290 ~------~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s 363 (490)
. +...++.+|..+ .++||||||+|.+..... ...........|+..|+.-
T Consensus 102 ~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~~~~---------------------~~~~~~~~~~~Ll~~le~~-- 157 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYRPDN---------------------ERDYGQEAIEILLQVMENQ-- 157 (284)
T ss_pred hHhhcccchHHHHHHHHHc-cCcEEEEechhhhccCCC---------------------ccchHHHHHHHHHHHHhcC--
Confidence 2 234566667665 458999999998742100 0122345667788888753
Q ss_pred CCCCcEEEEEecCCC--C---CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCch
Q 011254 364 SCGDERIIIFTTNHK--D---RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLF 421 (490)
Q Consensus 364 ~~~~~~iiI~TTN~~--~---~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~ 421 (490)
..+++||++++.. + .++|+|.+ ||+.+|+||.++.+++..|+++++......+.
T Consensus 158 --~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~ 216 (284)
T TIGR02880 158 --RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFS 216 (284)
T ss_pred --CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccC
Confidence 2457777777643 3 35899999 99999999999999999999999976544433
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.73 E-value=9.4e-17 Score=162.13 Aligned_cols=183 Identities=16% Similarity=0.189 Sum_probs=131.2
Q ss_pred CccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHH
Q 011254 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELR 296 (490)
Q Consensus 217 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~ 296 (490)
+|++++|.++.++.|...+...... ...+.+++||||||||||+|++++|++++.++..+..+.......+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 6899999999999887766533322 12345799999999999999999999999998877766665666777
Q ss_pred HHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccc--------------
Q 011254 297 NLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLW-------------- 362 (490)
Q Consensus 297 ~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~-------------- 362 (490)
..+.....+.||||||||.+.... ...|++.|+...
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~~~------------------------------~e~l~~~~~~~~~~~v~~~~~~~~~~ 123 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSPAV------------------------------EELLYPAMEDFRLDIVIGKGPSARSV 123 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCHHH------------------------------HHHhhHHHhhhheeeeeccCccccce
Confidence 777777788999999999884311 011222222110
Q ss_pred cCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHH-HHHhhhccCCCHHHHH
Q 011254 363 SSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLE-VEGLIEKAKVTPADVA 439 (490)
Q Consensus 363 s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~-i~~l~~~~~~tpa~i~ 439 (490)
.......++|++||++..+++++++ ||...++++.++.++..++++...+.....+.++ +..++...+-.|..+.
T Consensus 124 ~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~ 199 (305)
T TIGR00635 124 RLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIAN 199 (305)
T ss_pred eecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHH
Confidence 0011237899999999999999998 9999999999999999999998776544444433 4445554444554443
No 49
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.72 E-value=2.7e-17 Score=158.79 Aligned_cols=199 Identities=18% Similarity=0.196 Sum_probs=146.5
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChH
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNM 293 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~ 293 (490)
.|.+|++.+|++++|+.+.-.+.....+. ...-.+|||||||.||||||..||+++|.++-..+...+....
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~g 92 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPG 92 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChh
Confidence 58899999999999998876665443332 2234699999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEE
Q 011254 294 ELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIF 373 (490)
Q Consensus 294 ~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~ 373 (490)
+|..++.......|||||||+++.. .-.+....+++....+-..+.....+..- || =...-+|+
T Consensus 93 DlaaiLt~Le~~DVLFIDEIHrl~~----~vEE~LYpaMEDf~lDI~IG~gp~Arsv~------ld------LppFTLIG 156 (332)
T COG2255 93 DLAAILTNLEEGDVLFIDEIHRLSP----AVEEVLYPAMEDFRLDIIIGKGPAARSIR------LD------LPPFTLIG 156 (332)
T ss_pred hHHHHHhcCCcCCeEEEehhhhcCh----hHHHHhhhhhhheeEEEEEccCCccceEe------cc------CCCeeEee
Confidence 9999999999999999999999843 11111111222222222211111111110 01 02367999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHH-HHHhhhccCCCHHHH
Q 011254 374 TTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLE-VEGLIEKAKVTPADV 438 (490)
Q Consensus 374 TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~-i~~l~~~~~~tpa~i 438 (490)
+|.+...|...|.. ||....++.+.+.++...|+++.-...+..+.++ ..+++....-||.--
T Consensus 157 ATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 157 ATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred eccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHH
Confidence 99999999999998 9999999999999999999998887776666544 555666666777633
No 50
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.71 E-value=2.6e-16 Score=177.47 Aligned_cols=158 Identities=25% Similarity=0.256 Sum_probs=114.9
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCCh-------
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGN------- 292 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~------- 292 (490)
++.|.+++|+.|.+.+..... .+...+..+||+||||||||++|++||+.++.+++.++++.+.+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~-------~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKL-------RGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHh-------hcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 478899999998876654322 122333479999999999999999999999999999987654322
Q ss_pred --------HHHHHHHHhcc-CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccc--
Q 011254 293 --------MELRNLLIATE-NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGL-- 361 (490)
Q Consensus 293 --------~~l~~l~~~~~-~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl-- 361 (490)
..+.+.|..+. ...||+|||||.+.. +. . ....+.||..+|.-
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~--~~---------------------~---~~~~~aLl~~ld~~~~ 447 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGS--SF---------------------R---GDPASALLEVLDPEQN 447 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCC--cc---------------------C---CCHHHHHHHhcCHHhc
Confidence 23445555443 445999999998852 10 0 11234566666521
Q ss_pred --ccC-------CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011254 362 --WSS-------CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYL 413 (490)
Q Consensus 362 --~s~-------~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l 413 (490)
... .-.++++|+|||.++.+|++|++ ||+ .|+|+.++.+++..|+++|+
T Consensus 448 ~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 448 NAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 000 01358899999999999999999 995 68999999999999999888
No 51
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.71 E-value=7.2e-16 Score=148.03 Aligned_cols=179 Identities=21% Similarity=0.308 Sum_probs=145.9
Q ss_pred CcceecccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcE
Q 011254 205 DVWQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDV 281 (490)
Q Consensus 205 ~~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~ 281 (490)
+...+|....|..+++|+|.+.+|+.|++....|+.. . +...+||||++|||||++++|+.+++ |+.+
T Consensus 13 ~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G--------~-pannvLL~G~rGtGKSSlVkall~~y~~~GLRl 83 (249)
T PF05673_consen 13 GYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQG--------L-PANNVLLWGARGTGKSSLVKALLNEYADQGLRL 83 (249)
T ss_pred CcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcC--------C-CCcceEEecCCCCCHHHHHHHHHHHHhhcCceE
Confidence 4567888888899999999999999999999988874 2 35679999999999999999999977 7788
Q ss_pred EEEeccccCChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccc
Q 011254 282 YDLELTNLRGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGL 361 (490)
Q Consensus 282 ~~l~~s~~~~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl 361 (490)
+.+.-.++..-..+...+...+.+-|||+||+- + .........|-..|||-
T Consensus 84 Iev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLs--F---------------------------e~~d~~yk~LKs~LeGg 134 (249)
T PF05673_consen 84 IEVSKEDLGDLPELLDLLRDRPYKFILFCDDLS--F---------------------------EEGDTEYKALKSVLEGG 134 (249)
T ss_pred EEECHHHhccHHHHHHHHhcCCCCEEEEecCCC--C---------------------------CCCcHHHHHHHHHhcCc
Confidence 888888888888888888888889999999964 2 22234557788889988
Q ss_pred ccCCCCcEEEEEecCCCCCCCccc----------cCC-----------CceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc
Q 011254 362 WSSCGDERIIIFTTNHKDRLDPAF----------LRP-----------GRMDVHIHMSYCTSCGFKMLASSYLGITEHPL 420 (490)
Q Consensus 362 ~s~~~~~~iiI~TTN~~~~LD~aL----------lRp-----------GR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l 420 (490)
-...+++++|.+|+|+-..+.... +.| -||...|.|..|+.++..+|+++|+...+.++
T Consensus 135 le~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~ 214 (249)
T PF05673_consen 135 LEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLEL 214 (249)
T ss_pred cccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 777788999999999754443221 112 29999999999999999999999997666655
Q ss_pred h
Q 011254 421 F 421 (490)
Q Consensus 421 ~ 421 (490)
.
T Consensus 215 ~ 215 (249)
T PF05673_consen 215 D 215 (249)
T ss_pred C
Confidence 4
No 52
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=6.4e-16 Score=164.23 Aligned_cols=155 Identities=19% Similarity=0.364 Sum_probs=116.7
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++++|++.+++.|...+. . ...+.++|||||||||||++|+++|+.++.
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~----~--------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALK----K--------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 468999999999988777665443 1 234567999999999999999999999865
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 280 -----------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 280 -----------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
+++.++.+.-.+-..++++...+. ...||+|||+|.+..
T Consensus 76 ~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~------------------------ 131 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK------------------------ 131 (472)
T ss_pred HHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH------------------------
Confidence 567777654445566776655432 457999999998731
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCC
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGIT 416 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~ 416 (490)
..++.||..++.. +..+++|++|+.+..+++++.+ |+ ..++|..++.++...+++..+...
T Consensus 132 ------~a~~~LLk~LE~p----~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~e 192 (472)
T PRK14962 132 ------EAFNALLKTLEEP----PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAE 192 (472)
T ss_pred ------HHHHHHHHHHHhC----CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHc
Confidence 2345678888753 2347778888888899999998 77 479999999999888887766443
No 53
>PRK04195 replication factor C large subunit; Provisional
Probab=99.68 E-value=4.6e-16 Score=166.87 Aligned_cols=166 Identities=21% Similarity=0.303 Sum_probs=125.7
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCC
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRG 291 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~ 291 (490)
-..|.+|++|+|+++.++.+.+.+..+.. |.+ ++.+|||||||||||++|+++|++++++++.++.++..+
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~-~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKP-KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCC-CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 45799999999999999999888876552 222 678999999999999999999999999999999988776
Q ss_pred hHHHHHHHHhcc--------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc
Q 011254 292 NMELRNLLIATE--------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS 363 (490)
Q Consensus 292 ~~~l~~l~~~~~--------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s 363 (490)
...++.++.... .+.||+|||+|.+... .....+..|++.++..
T Consensus 78 ~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~--------------------------~d~~~~~aL~~~l~~~-- 129 (482)
T PRK04195 78 ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN--------------------------EDRGGARAILELIKKA-- 129 (482)
T ss_pred HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccc--------------------------cchhHHHHHHHHHHcC--
Confidence 666666654432 4789999999987431 1122345667776631
Q ss_pred CCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc
Q 011254 364 SCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPL 420 (490)
Q Consensus 364 ~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l 420 (490)
...||+++|.+..+++.-+| +....|+|+.|+..+...+++..+...+..+
T Consensus 130 ----~~~iIli~n~~~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i 180 (482)
T PRK04195 130 ----KQPIILTANDPYDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICRKEGIEC 180 (482)
T ss_pred ----CCCEEEeccCccccchhhHh--ccceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 13477789998888873334 3347799999999999988888876554443
No 54
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.3e-15 Score=165.73 Aligned_cols=158 Identities=18% Similarity=0.300 Sum_probs=122.9
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++|+|++.+++.|...+. +...+..||||||+|||||++++++|+.+++
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~------------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALD------------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHh------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 468999999999999888876654 2234568999999999999999999998864
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 280 -----------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 280 -----------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
+++.++..+-.+..++++++.... +..|+||||+|.+-
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------------------- 132 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------------------- 132 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-------------------------
Confidence 455665544345567777776542 35799999999873
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCC
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHP 419 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~ 419 (490)
....+.||..|+.. ...++||++||.+.+|.+.++. |+ .++.|..++.++....++..+..++..
T Consensus 133 -----~~A~NALLKtLEEP----P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 133 -----NHAFNAMLKTLEEP----PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred -----HHHHHHHHHHHHhc----CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 22457788888764 2358899999999999999998 87 789999999999988888877655433
No 55
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=5e-16 Score=167.00 Aligned_cols=159 Identities=19% Similarity=0.304 Sum_probs=124.5
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
.+|.+|++|+|++.+++.|.+.+.. ...+..|||+||+|||||++++++|+.+++
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 4689999999999999988776651 234568999999999999999999999876
Q ss_pred ----------------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhccccccccc
Q 011254 280 ----------------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVI 337 (490)
Q Consensus 280 ----------------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~ 337 (490)
+++.++..+-.+-+++++++.... +..|+||||+|.+-
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-------------------- 137 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-------------------- 137 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------------------
Confidence 455666554445667787776542 45799999999873
Q ss_pred ccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCC
Q 011254 338 QPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITE 417 (490)
Q Consensus 338 ~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~ 417 (490)
....+.||..|+.- ...++||++||.+++|.+.++. |+ .++.|..++.++..+.++..+..++
T Consensus 138 ----------~~AaNALLKTLEEP----P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Eg 200 (700)
T PRK12323 138 ----------NHAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEG 200 (700)
T ss_pred ----------HHHHHHHHHhhccC----CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcC
Confidence 23457788888863 3458899999999999999998 86 7899999999998888887776554
Q ss_pred CCc
Q 011254 418 HPL 420 (490)
Q Consensus 418 ~~l 420 (490)
...
T Consensus 201 i~~ 203 (700)
T PRK12323 201 IAH 203 (700)
T ss_pred CCC
Confidence 433
No 56
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.2e-15 Score=160.38 Aligned_cols=157 Identities=15% Similarity=0.296 Sum_probs=118.5
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++++|++.+.+.|...+.. ...+..||||||||||||++|+++|+.++.
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKS------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 4689999999999998887666541 123456999999999999999999999876
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 280 -----------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 280 -----------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
+++.++...-.+.+.++++..... +..|+||||+|.+-
T Consensus 80 sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------------------- 134 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------------------- 134 (484)
T ss_pred HHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-------------------------
Confidence 355555433334556666654432 45699999999873
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCC
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEH 418 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~ 418 (490)
....+.||..|+.. ...+++|++|+.++.|.+++++ |+ .++.|..++.++....++..+..++.
T Consensus 135 -----~~A~NALLKtLEEP----p~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 135 -----DQSFNALLKTLEEP----PAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred -----HHHHHHHHHHhhcC----CCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCC
Confidence 23467788888753 3458899999999999999998 87 57899999998888877777655443
No 57
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.3e-15 Score=160.91 Aligned_cols=158 Identities=23% Similarity=0.205 Sum_probs=115.4
Q ss_pred cccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHH----
Q 011254 221 LAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELR---- 296 (490)
Q Consensus 221 l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~---- 296 (490)
=.|.+++|++|++.+.--... +.-...-++|+||||+|||||+++||..+|..|+.+++..+.++.++|
T Consensus 325 HYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence 357788999999887632222 222223478999999999999999999999999999999997777654
Q ss_pred -----------HHHHhcc-CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhc-----
Q 011254 297 -----------NLLIATE-NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFID----- 359 (490)
Q Consensus 297 -----------~l~~~~~-~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~id----- 359 (490)
+-+.++. ..-+++|||||.+.. +- ...--|.||..+|
T Consensus 398 TYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~s--s~------------------------rGDPaSALLEVLDPEQN~ 451 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGS--SF------------------------RGDPASALLEVLDPEQNN 451 (782)
T ss_pred cccccCChHHHHHHHHhCCcCCeEEeechhhccC--CC------------------------CCChHHHHHhhcCHhhcC
Confidence 2233332 456899999999853 11 1111234555554
Q ss_pred ----ccccCC--CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 360 ----GLWSSC--GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 360 ----gl~s~~--~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
..-.-. =.++++|+|.|..+.++.+|+. || ..|+++-.+.++...|+++||-
T Consensus 452 ~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 452 TFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred chhhccccCccchhheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcc
Confidence 110000 0359999999999999999999 99 5699999999999999999983
No 58
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.4e-15 Score=162.08 Aligned_cols=159 Identities=15% Similarity=0.277 Sum_probs=122.5
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++|+|++.+++.|...+. ....+..|||+||||||||++|+++|+.+++
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~------------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALE------------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 458999999999999888877664 1233578999999999999999999999865
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 280 -----------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 280 -----------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
+++.++.++-.+-.++++++.... +..|++|||+|.+-.
T Consensus 77 sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~------------------------ 132 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST------------------------ 132 (702)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH------------------------
Confidence 566666665455677888776542 457999999998731
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPL 420 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l 420 (490)
...+.||..|+.. ...+.+|++|+.+..+.+.+++ |+ .+++|..++.++....+...+..++...
T Consensus 133 ------~A~NALLKtLEEP----P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~i 197 (702)
T PRK14960 133 ------HSFNALLKTLEEP----PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAA 197 (702)
T ss_pred ------HHHHHHHHHHhcC----CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCC
Confidence 2456788888763 2347888888989999888886 77 6799999999998888877776554333
No 59
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=6.3e-15 Score=152.57 Aligned_cols=159 Identities=14% Similarity=0.227 Sum_probs=116.7
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++++|++.+++.+...+. ....+..|||+||||||||++|+++|+.+++
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~------------~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLS------------LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHH------------cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 358899999999999888766553 1234568999999999999999999998853
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 280 -----------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 280 -----------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
+++.++.++-..-..+++++.... ...|++|||+|.+-
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------------------- 132 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------------------- 132 (363)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-------------------------
Confidence 344455443234456777666532 35699999999772
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPL 420 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l 420 (490)
....+.||..++.. +..+.+|++|+.++.+.+++.. |+ ..++|+.++.++....+...+...+..+
T Consensus 133 -----~~a~naLLk~lEe~----~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i 198 (363)
T PRK14961 133 -----RHSFNALLKTLEEP----PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDT 198 (363)
T ss_pred -----HHHHHHHHHHHhcC----CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 12345688887753 2347788888888999999887 76 6799999999999888887665544333
No 60
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.64 E-value=1.1e-14 Score=147.88 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=114.1
Q ss_pred cceecccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 206 VWQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 206 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.|.. -..|.+|++++|+++.++.+...+. ....+..+|||||||+|||++++++|++++.+++.++
T Consensus 10 ~w~~--kyrP~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~ 75 (316)
T PHA02544 10 MWEQ--KYRPSTIDECILPAADKETFKSIVK------------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVN 75 (316)
T ss_pred ccee--ccCCCcHHHhcCcHHHHHHHHHHHh------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEec
Confidence 5643 4678999999999999888776654 1224567788999999999999999999999999999
Q ss_pred ccccCChHHHHHHH----Hhc---cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHh
Q 011254 286 LTNLRGNMELRNLL----IAT---ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFI 358 (490)
Q Consensus 286 ~s~~~~~~~l~~l~----~~~---~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~i 358 (490)
++. .....++..+ ... ..+.||+|||+|.+.. ......|...+
T Consensus 76 ~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-----------------------------~~~~~~L~~~l 125 (316)
T PHA02544 76 GSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-----------------------------ADAQRHLRSFM 125 (316)
T ss_pred cCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-----------------------------HHHHHHHHHHH
Confidence 887 2233333322 212 2578999999997721 00112344455
Q ss_pred cccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011254 359 DGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYL 413 (490)
Q Consensus 359 dgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l 413 (490)
+... ....+|+|||.+..+++++.+ |+. .+.++.|+.+++..+++.++
T Consensus 126 e~~~----~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 126 EAYS----KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HhcC----CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 5432 236788999999999999998 884 78999999999887766543
No 61
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.63 E-value=6.2e-15 Score=148.78 Aligned_cols=151 Identities=25% Similarity=0.343 Sum_probs=108.8
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChH
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNM 293 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~ 293 (490)
.|.+|++++|++.+.-.- ..+...+. ...-.+.+|||||||||||+|+.||+..+++|..++... .+..
T Consensus 19 RP~~lde~vGQ~HLlg~~-~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gvk 87 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEG-KPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGVK 87 (436)
T ss_pred CCCCHHHhcChHhhhCCC-chHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccHH
Confidence 589999999987764210 01111111 122346899999999999999999999999999998654 4668
Q ss_pred HHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCC
Q 011254 294 ELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGD 367 (490)
Q Consensus 294 ~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~ 367 (490)
+++.++..+. ++.|||||||+.+-. . -...||-.++. +
T Consensus 88 dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK----~--------------------------QQD~lLp~vE~------G 131 (436)
T COG2256 88 DLREIIEEARKNRLLGRRTILFLDEIHRFNK----A--------------------------QQDALLPHVEN------G 131 (436)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEehhhhcCh----h--------------------------hhhhhhhhhcC------C
Confidence 8999998773 479999999998721 1 11235666542 3
Q ss_pred cEEEEE-ecCCC-CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 368 ERIIIF-TTNHK-DRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 368 ~~iiI~-TTN~~-~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
.+++|+ ||..| -.|.+||+. |. ...++...+.++.++++++-+.
T Consensus 132 ~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 132 TIILIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred eEEEEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHh
Confidence 477776 44444 589999998 65 5588999999999999987443
No 62
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=7.9e-15 Score=156.63 Aligned_cols=157 Identities=15% Similarity=0.272 Sum_probs=119.9
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++++|++.+.+.+...+. ....+.+|||+||||||||++|+++|+.+++
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~------------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTIL------------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 578999999999998887766543 1234568999999999999999999999864
Q ss_pred ---------------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccc
Q 011254 280 ---------------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQ 338 (490)
Q Consensus 280 ---------------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~ 338 (490)
+++.++..+-.+..+++.++..+. +..|++|||+|.+.
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------------- 141 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------------- 141 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC---------------------
Confidence 344454443345677888877653 45799999999772
Q ss_pred cccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCC
Q 011254 339 PVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEH 418 (490)
Q Consensus 339 ~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~ 418 (490)
...++.||..++.. +..+++|++|+.+++++++++. |+ ..++|..++.++...+++..+..++.
T Consensus 142 ---------~~a~naLLk~LEep----p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 142 ---------KGAFNALLKTLEEP----PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred ---------HHHHHHHHHHHhhc----CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 22356788888753 3457888888999999999987 76 67899999999988888877765443
No 63
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=7.2e-15 Score=155.89 Aligned_cols=159 Identities=11% Similarity=0.196 Sum_probs=123.6
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc--------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-------------- 278 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-------------- 278 (490)
..|.+|++|+|++.+++.+.+.+. ....+.+|||+||||||||++|+++|+.++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~------------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFT------------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 358999999999998887765543 123467899999999999999999998653
Q ss_pred ----------CcEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 279 ----------FDVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 279 ----------~~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
.+++.++.++-.+-.+++.++..+. +.-|++|||+|.+-
T Consensus 75 ~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------------------- 129 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------------------- 129 (491)
T ss_pred HHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC-------------------------
Confidence 4677888776666778888876653 45799999998772
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPL 420 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l 420 (490)
...++.||..|+.. ...+++|++|+.++++.+.++. |+ ..++|..++.++....+...+..++..+
T Consensus 130 -----~~A~NaLLK~LEeP----p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i 195 (491)
T PRK14964 130 -----NSAFNALLKTLEEP----APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEH 195 (491)
T ss_pred -----HHHHHHHHHHHhCC----CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCC
Confidence 23467789998864 3458888999999999999987 66 6689999999998888887776554433
No 64
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=6.8e-15 Score=157.92 Aligned_cols=157 Identities=15% Similarity=0.291 Sum_probs=120.3
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++|+|++.+++.|...+.. ...+..|||+||||||||++|+++|+.+++
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 4689999999999999988776641 234567999999999999999999999865
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 280 -----------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 280 -----------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
+++.++.++-.+-.++++++.... +..|++|||+|.+..
T Consensus 78 ~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~------------------------ 133 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG------------------------ 133 (509)
T ss_pred HHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH------------------------
Confidence 366777665556677888776543 346999999998732
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCC
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEH 418 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~ 418 (490)
...+.||..|+.. .+.+.+|++|+.+.++.+.++. |+ ..++|..++.++....++..+...+.
T Consensus 134 ------~a~naLLk~LEep----p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi 196 (509)
T PRK14958 134 ------HSFNALLKTLEEP----PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENV 196 (509)
T ss_pred ------HHHHHHHHHHhcc----CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 2356788888864 2457888888889999988887 76 67899988888877766666654443
No 65
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.61 E-value=6.4e-15 Score=165.36 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=116.6
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----------cCcEEE
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 283 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~ 283 (490)
.|..++.++|.++..+.+++.+. ..-+.++||+||||||||++++++|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~-------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC-------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 46789999999888777665443 2235689999999999999999999987 788999
Q ss_pred EeccccCC--------hHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHH
Q 011254 284 LELTNLRG--------NMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSG 353 (490)
Q Consensus 284 l~~s~~~~--------~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 353 (490)
++++.+.. +..+++++..+. .++||||||||.+++.... .......-+-
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~---------------------~~~~~~~~~~ 302 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT---------------------SGGSMDASNL 302 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC---------------------CCccHHHHHH
Confidence 99877632 357888888764 5899999999999752110 0000111122
Q ss_pred HHHHhcccccCCCCcEEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 354 MLNFIDGLWSSCGDERIIIFTTNHKD-----RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 354 LL~~idgl~s~~~~~~iiI~TTN~~~-----~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
|+..+. .+++.+|++||..+ .+|+||.| ||. .|+++.|+.+++.+|++....
T Consensus 303 L~~~l~------~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 303 LKPALS------SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred HHHHHh------CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHH
Confidence 334332 24588999998743 57999999 996 799999999999999996654
No 66
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.5e-14 Score=153.87 Aligned_cols=162 Identities=22% Similarity=0.300 Sum_probs=113.3
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHH----
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMEL---- 295 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l---- 295 (490)
+-.|..++|++|++.+.--. -.|..-..-++|+||||.|||+++++||..||..|+.++...+.+..++
T Consensus 412 DHYgm~dVKeRILEfiAV~k-------Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGK-------LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccchHHHHHHHHHHHHHHh-------hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 44578899999988765211 1122334458899999999999999999999999999999888554443
Q ss_pred -----------HHHHHhcc-CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHH------HH
Q 011254 296 -----------RNLLIATE-NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGML------NF 357 (490)
Q Consensus 296 -----------~~l~~~~~-~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL------~~ 357 (490)
.+.+.... ..-+++|||||.+.. +- .......|-+|| ||
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~--g~---------------------qGDPasALLElLDPEQNanF 541 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGS--GH---------------------QGDPASALLELLDPEQNANF 541 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCceEEeehhhhhCC--CC---------------------CCChHHHHHHhcChhhccch
Confidence 34444443 456899999999852 11 111112222222 12
Q ss_pred hcccccCC--CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 358 IDGLWSSC--GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 358 idgl~s~~--~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
+|....-+ =..+++|+|.|..+.|+++|+. ||. .|+++-...++...|+++||-
T Consensus 542 lDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 542 LDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hhhccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 22221110 0248999999999999999999 995 599999999999999999994
No 67
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.8e-14 Score=157.16 Aligned_cols=156 Identities=15% Similarity=0.287 Sum_probs=120.2
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++|+|++.+++.|...+.. ...+..|||+||||||||++|+++|+.+++
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDL------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 3689999999999999877765541 234567999999999999999999999866
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 280 -----------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 280 -----------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
+++.++.++-.+-.++++++.... ..-|++|||+|.+-
T Consensus 78 ~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------------------- 132 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------------------- 132 (647)
T ss_pred HHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-------------------------
Confidence 445555543334566777766542 35699999999873
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCC
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITE 417 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~ 417 (490)
....+.||..|+.. .+.+++|++|+.+..|.+.++. |+ .+++|..++.++....+++.+..++
T Consensus 133 -----~~a~NALLKtLEEP----p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~ 195 (647)
T PRK07994 133 -----RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQ 195 (647)
T ss_pred -----HHHHHHHHHHHHcC----CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 23567899998863 3457888889999999999998 85 8899999999998888887774443
No 68
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1e-14 Score=158.51 Aligned_cols=159 Identities=17% Similarity=0.292 Sum_probs=121.1
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++|+|++.+++.|...+.. ...+.+|||+||||||||++|+++|+.+++
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 4689999999999999888776651 234678999999999999999999998754
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhc------cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 280 -----------DVYDLELTNLRGNMELRNLLIAT------ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 280 -----------~~~~l~~s~~~~~~~l~~l~~~~------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
+++.++..+-.+...+++++..+ .+..||||||+|.+-
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------------------- 132 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------------------- 132 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-------------------------
Confidence 34445544434556788887654 245799999999762
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPL 420 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l 420 (490)
...++.||..|+... +.+.+|++||.+..+.+.++. |+ .++.|..++.++....++..+...+..+
T Consensus 133 -----~~A~NALLKtLEEPp----~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~i 198 (709)
T PRK08691 133 -----KSAFNAMLKTLEEPP----EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAY 198 (709)
T ss_pred -----HHHHHHHHHHHHhCC----CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCc
Confidence 224567888888642 347888899999999998885 87 7789999999998888887777654443
No 69
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.9e-14 Score=159.36 Aligned_cols=156 Identities=17% Similarity=0.299 Sum_probs=116.5
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCc------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD------------ 280 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~------------ 280 (490)
..|.+|++|+|++.+++.|.+.+.. ...+..|||+||||||||++|+++|+.+++.
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~~------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALTQ------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 3578999999999998887665541 2345679999999999999999999998753
Q ss_pred ------------EEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 281 ------------VYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 281 ------------~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
++.++..+..+-..++.+..... ...|+||||+|.+-
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------------------- 132 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------------------- 132 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-------------------------
Confidence 22333332233455676665432 35699999999872
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCC
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITE 417 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~ 417 (490)
...++.||..|+.. ...+++|++|+.+..|.+.++. |+ .+++|..++.++....+++.+..++
T Consensus 133 -----~eAqNALLKtLEEP----P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~Eg 195 (944)
T PRK14949 133 -----RSSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQ 195 (944)
T ss_pred -----HHHHHHHHHHHhcc----CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 34567899998864 3347788888889999999988 76 7899999999998888887775543
No 70
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.60 E-value=3.2e-14 Score=146.57 Aligned_cols=160 Identities=17% Similarity=0.311 Sum_probs=119.0
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++++|++.+++.+...+.. ...+..||||||||+|||++|+++|..+..
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 4688999999999999888776641 234568999999999999999999998742
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 280 -----------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 280 -----------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
+++.++.....+...+++++..+. .+-||+|||+|.+..
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~------------------------ 131 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK------------------------ 131 (355)
T ss_pred HHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH------------------------
Confidence 345555443334456777776543 346999999987621
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCch
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLF 421 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~ 421 (490)
...+.||..++.. ....++|++||.++.+.+++.+ |+ ..++|+.|+.++...++..++...+..+.
T Consensus 132 ------~~~~~Ll~~le~~----~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~ 197 (355)
T TIGR02397 132 ------SAFNALLKTLEEP----PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIE 197 (355)
T ss_pred ------HHHHHHHHHHhCC----ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 2356688888763 2357788888999999999987 76 57899999999999888887765544443
No 71
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.4e-14 Score=155.61 Aligned_cols=159 Identities=16% Similarity=0.291 Sum_probs=121.7
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc--------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-------------- 278 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-------------- 278 (490)
..|.+|++|+|++.+++.+.+.+.. ...++.||||||+|||||++|+++|+.++
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 3589999999999998888776652 23467899999999999999999999875
Q ss_pred ----------CcEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 279 ----------FDVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 279 ----------~~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
.+++.++.++-.+-+.++.+...+. ..-|++|||+|.+.
T Consensus 78 ~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------------------- 132 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------------------- 132 (559)
T ss_pred HHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-------------------------
Confidence 3566666655445567777776643 35699999999773
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPL 420 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l 420 (490)
....+.||..++.. +..+++|++|+.++.+++++++ |+ ..++|..++.++....+...+...+..+
T Consensus 133 -----~~a~naLLKtLEep----p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i 198 (559)
T PRK05563 133 -----TGAFNALLKTLEEP----PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEY 198 (559)
T ss_pred -----HHHHHHHHHHhcCC----CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 12456788888764 3457888888889999999987 76 4689999999998888877765544333
No 72
>PLN03025 replication factor C subunit; Provisional
Probab=99.60 E-value=2e-14 Score=146.35 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=112.5
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc-----CcEEEEec
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FDVYDLEL 286 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-----~~~~~l~~ 286 (490)
-..|.+|++++|++++.+.|...+. . + .. ..+|||||||||||++|+++|+++. ..++.++.
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~----~-------~-~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIAR----D-------G-NM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHh----c-------C-CC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 4579999999999988877655432 1 1 12 2489999999999999999999972 34666776
Q ss_pred cccCChHHHHHHHHhc---------cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHH
Q 011254 287 TNLRGNMELRNLLIAT---------ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNF 357 (490)
Q Consensus 287 s~~~~~~~l~~l~~~~---------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 357 (490)
++..+...++..+... ....|++|||+|.+.. ...+.|+..
T Consensus 73 sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~------------------------------~aq~aL~~~ 122 (319)
T PLN03025 73 SDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS------------------------------GAQQALRRT 122 (319)
T ss_pred cccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH------------------------------HHHHHHHHH
Confidence 6655555555554321 2357999999998732 112446666
Q ss_pred hcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCC
Q 011254 358 IDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHP 419 (490)
Q Consensus 358 idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~ 419 (490)
|+-.. ....+|++||....+.++|.. |+ ..++|+.|+.++....+...+..++..
T Consensus 123 lE~~~----~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~ 177 (319)
T PLN03025 123 MEIYS----NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVP 177 (319)
T ss_pred Hhccc----CCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCC
Confidence 66432 224578899999999999987 65 579999999999888887776554433
No 73
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.8e-14 Score=151.83 Aligned_cols=157 Identities=18% Similarity=0.351 Sum_probs=117.5
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++|+|++.+++.|...+.. ...+..||||||||||||++|+++|+.+.+
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 4689999999999998888766552 234566899999999999999999998853
Q ss_pred ----------cEEEEeccccCChHHHHHHHHhc------cCCeEEEEeccchhhhhhhhHhhhhhccccccccccccccc
Q 011254 280 ----------DVYDLELTNLRGNMELRNLLIAT------ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNL 343 (490)
Q Consensus 280 ----------~~~~l~~s~~~~~~~l~~l~~~~------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~ 343 (490)
+++.++.+...+-..++.+...+ ..+.||||||+|.+.
T Consensus 76 c~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-------------------------- 129 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-------------------------- 129 (504)
T ss_pred hHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------------------
Confidence 35566655434445566654433 246799999998662
Q ss_pred CCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCC
Q 011254 344 NQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEH 418 (490)
Q Consensus 344 ~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~ 418 (490)
...++.||..++.. ....++|++||.+..+.+++.. |+ .+++|..++.++....++..+...+.
T Consensus 130 ----~~a~naLLk~LEep----~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi 193 (504)
T PRK14963 130 ----KSAFNALLKTLEEP----PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGR 193 (504)
T ss_pred ----HHHHHHHHHHHHhC----CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 23466788888763 2347888889999999999987 76 47999999999988888877755443
No 74
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.59 E-value=3.2e-14 Score=149.84 Aligned_cols=150 Identities=21% Similarity=0.304 Sum_probs=111.0
Q ss_pred CCCCCccccccChhHHHH---HHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc
Q 011254 213 DHPATFDTLAMDSDMKQM---IMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL 289 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~---i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 289 (490)
-.|.+|++++|++.+... +...+. . .....+||+||||||||++|+++|+.++.+++.++....
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~----~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIE----A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHH----c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 468999999999887544 444432 1 123479999999999999999999999999999987643
Q ss_pred CChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc
Q 011254 290 RGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS 363 (490)
Q Consensus 290 ~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s 363 (490)
+...++.++..+. .+.||||||||.+.. .....||..++.
T Consensus 73 -~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~------------------------------~~q~~LL~~le~--- 118 (413)
T PRK13342 73 -GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK------------------------------AQQDALLPHVED--- 118 (413)
T ss_pred -cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH------------------------------HHHHHHHHHhhc---
Confidence 4456666666542 678999999998732 112346666653
Q ss_pred CCCCcEEEEEec--CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCC
Q 011254 364 SCGDERIIIFTT--NHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGI 415 (490)
Q Consensus 364 ~~~~~~iiI~TT--N~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~ 415 (490)
..+++|++| |....++++|++ |+ ..+.|+.++.++...+++..+..
T Consensus 119 ---~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 119 ---GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred ---CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 235666554 344589999998 87 67999999999999999887643
No 75
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.8e-14 Score=155.23 Aligned_cols=159 Identities=17% Similarity=0.305 Sum_probs=119.6
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++++|++.+++.|.+.+.. ...+..||||||+|||||++|+++|+.+++
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 4689999999999988877766541 234567999999999999999999999865
Q ss_pred ----------------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhccccccccc
Q 011254 280 ----------------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVI 337 (490)
Q Consensus 280 ----------------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~ 337 (490)
+++.++..+-.+-+++++++.... +.-|++|||+|.+.
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-------------------- 137 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-------------------- 137 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------------------
Confidence 345555444345567888776643 34699999999873
Q ss_pred ccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCC
Q 011254 338 QPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITE 417 (490)
Q Consensus 338 ~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~ 417 (490)
....+.||..++.. .+..++|++|+.+.++.+.++. |+ .+++|..++.++....++..+...+
T Consensus 138 ----------~~a~NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~eg 200 (618)
T PRK14951 138 ----------NTAFNAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAEN 200 (618)
T ss_pred ----------HHHHHHHHHhcccC----CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcC
Confidence 22356788888763 3457788888889999988887 76 7899999999998888877765554
Q ss_pred CCc
Q 011254 418 HPL 420 (490)
Q Consensus 418 ~~l 420 (490)
...
T Consensus 201 i~i 203 (618)
T PRK14951 201 VPA 203 (618)
T ss_pred CCC
Confidence 433
No 76
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3.6e-14 Score=159.22 Aligned_cols=158 Identities=18% Similarity=0.262 Sum_probs=118.7
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC------------
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 279 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 279 (490)
-..|.+|++|+|++.+++.|...+.. ...+..||||||+|||||++|++||+.+++
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 35789999999999998887766541 223567999999999999999999999863
Q ss_pred --------------cEEEEeccccCChHHHHHHHHhc------cCCeEEEEeccchhhhhhhhHhhhhhccccccccccc
Q 011254 280 --------------DVYDLELTNLRGNMELRNLLIAT------ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQP 339 (490)
Q Consensus 280 --------------~~~~l~~s~~~~~~~l~~l~~~~------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~ 339 (490)
+++.++..+..+-++++.+...+ ...-|+||||+|.+-
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt---------------------- 133 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT---------------------- 133 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC----------------------
Confidence 34445443333455666654432 245799999999883
Q ss_pred ccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCC
Q 011254 340 VMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEH 418 (490)
Q Consensus 340 ~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~ 418 (490)
....+.||+.|+... ..++||++|+.+++|-++|+. |+ .+++|..++.++...++...+..++.
T Consensus 134 --------~~a~NaLLK~LEEpP----~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv 197 (824)
T PRK07764 134 --------PQGFNALLKIVEEPP----EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGV 197 (824)
T ss_pred --------HHHHHHHHHHHhCCC----CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 234567899988753 458888999999999999887 65 68999999999988888887754433
No 77
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=4e-14 Score=155.31 Aligned_cols=156 Identities=19% Similarity=0.326 Sum_probs=117.0
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCc-----------
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD----------- 280 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~----------- 280 (490)
-..|.+|++|+|++.+++.|...+.. ...+.+||||||||||||++|+++|+.+.+.
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 35789999999999998888776651 2456789999999999999999999987542
Q ss_pred ----------EEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccC
Q 011254 281 ----------VYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLN 344 (490)
Q Consensus 281 ----------~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 344 (490)
++.++...-.+..+++.+...+. ...|++|||+|.+-.
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-------------------------- 132 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-------------------------- 132 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH--------------------------
Confidence 23333322223455777666543 457999999997731
Q ss_pred CchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCC
Q 011254 345 QVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGIT 416 (490)
Q Consensus 345 ~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~ 416 (490)
...+.||..|+.. +..+++|++|+.++.|.++++. |+ .+++|..++.++....+...+...
T Consensus 133 ----~A~NALLKtLEEP----P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~ke 193 (725)
T PRK07133 133 ----SAFNALLKTLEEP----PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKE 193 (725)
T ss_pred ----HHHHHHHHHhhcC----CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHc
Confidence 2466788888864 3457888888999999999988 77 589999999999887777655433
No 78
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=7.2e-14 Score=145.39 Aligned_cols=155 Identities=18% Similarity=0.231 Sum_probs=114.6
Q ss_pred CccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCc----------------
Q 011254 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD---------------- 280 (490)
Q Consensus 217 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~---------------- 280 (490)
.|++|+|++.+++.|...+..... .+...+.+.+.+|||+||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 589999999999998888764332 3444566678899999999999999999999987543
Q ss_pred -------EEEEeccc-cCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCc
Q 011254 281 -------VYDLELTN-LRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQV 346 (490)
Q Consensus 281 -------~~~l~~s~-~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 346 (490)
++.+.... ..+-.+++.++..+. ...|++|||+|.+..
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~---------------------------- 131 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE---------------------------- 131 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH----------------------------
Confidence 33333221 124456777776653 346999999998832
Q ss_pred hhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011254 347 PQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASS 411 (490)
Q Consensus 347 ~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~ 411 (490)
...+.||..|+.. ....++|++|+.++.|.|++++ |+ ..|+|+.|+.++....+..
T Consensus 132 --~aanaLLk~LEep----~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 132 --RAANALLKAVEEP----PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred --HHHHHHHHHhhcC----CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH
Confidence 1236688888763 2346677777779999999998 76 6899999999998777653
No 79
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3.4e-14 Score=153.05 Aligned_cols=155 Identities=16% Similarity=0.325 Sum_probs=116.4
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++++|++.+++.+...+. ....+++|||+||||||||++|+++|+.+.+
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~------------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAIL------------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 468999999999999888776553 1233578999999999999999999998742
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 280 -----------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 280 -----------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
+++.++.++..+-.+++.+..... ..-|++|||+|.+-.
T Consensus 78 sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~------------------------ 133 (605)
T PRK05896 78 VCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST------------------------ 133 (605)
T ss_pred HHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH------------------------
Confidence 455565544344566777665432 356999999997721
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCC
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGIT 416 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~ 416 (490)
...+.||..|+.. +...++|++|+.+..|.+++++ |+ ..++|+.++.++....+...+...
T Consensus 134 ------~A~NaLLKtLEEP----p~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~ke 194 (605)
T PRK05896 134 ------SAWNALLKTLEEP----PKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKE 194 (605)
T ss_pred ------HHHHHHHHHHHhC----CCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHc
Confidence 1346788888864 3357888888999999999988 76 479999999999887777766443
No 80
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.8e-14 Score=154.03 Aligned_cols=156 Identities=17% Similarity=0.294 Sum_probs=118.2
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++|+|++.+++.+...+.. ...+..|||+||||||||++|+++|+.+++
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 3578999999999999887766541 234568999999999999999999999865
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 280 -----------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 280 -----------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
+++.++.+.-.+-..+++++..+. +..|++|||+|.+.
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------------------- 132 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------------------- 132 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-------------------------
Confidence 345555443344567777776542 35699999999773
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCC
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITE 417 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~ 417 (490)
....+.||..|+.. .+.+++|++|+.+..+.+.++. |+ .+++|..++.++....+...+..++
T Consensus 133 -----~~a~naLLK~LEep----p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~eg 195 (527)
T PRK14969 133 -----KSAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQEN 195 (527)
T ss_pred -----HHHHHHHHHHHhCC----CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 22456788888874 3457888888889999888877 75 7799999999998877777665443
No 81
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=6.3e-14 Score=150.65 Aligned_cols=156 Identities=17% Similarity=0.319 Sum_probs=115.7
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++++|++.+++.|...+.. ...+..|||+||||||||++|+++|+.+++
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 3588999999999999887765541 133567999999999999999999998864
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 280 -----------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 280 -----------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
+++.++...-.+..+++.++.... ..-|++|||+|.+-
T Consensus 78 sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------------------- 132 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------------------- 132 (546)
T ss_pred HHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-------------------------
Confidence 555565533334456666665432 45799999999772
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCC
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITE 417 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~ 417 (490)
....+.||..|+.. ++.+++|++|+.+..+.++++. |+ ..++|..++.++....+...+...+
T Consensus 133 -----~~a~naLLK~LEep----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~eg 195 (546)
T PRK14957 133 -----KQSFNALLKTLEEP----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKEN 195 (546)
T ss_pred -----HHHHHHHHHHHhcC----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcC
Confidence 22456788888864 2447778877888889888887 76 7899999999998877776665443
No 82
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=5.5e-14 Score=152.40 Aligned_cols=160 Identities=21% Similarity=0.313 Sum_probs=119.7
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++|+|++.+++.|...+.. ...+..||||||+|||||++|+++|+.+++
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDA------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 4689999999999988887766541 234567999999999999999999998763
Q ss_pred -------------cEEEEeccccCChHHHHHHHHhc------cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccc
Q 011254 280 -------------DVYDLELTNLRGNMELRNLLIAT------ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPV 340 (490)
Q Consensus 280 -------------~~~~l~~s~~~~~~~l~~l~~~~------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 340 (490)
+++.++.++..+-++++.+.... ...-|++|||+|.+-
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt----------------------- 131 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT----------------------- 131 (584)
T ss_pred HHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-----------------------
Confidence 34555554434456666655443 245699999999873
Q ss_pred cccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc
Q 011254 341 MNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPL 420 (490)
Q Consensus 341 ~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l 420 (490)
....+.||..|+.. .+.+++|++|+.+++|.++++. |. .+++|..++.++....+..++...+..+
T Consensus 132 -------~~A~NALLK~LEEp----p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i 197 (584)
T PRK14952 132 -------TAGFNALLKIVEEP----PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVV 197 (584)
T ss_pred -------HHHHHHHHHHHhcC----CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 22466788888864 3458888989999999999987 74 7899999999998888887776554433
Q ss_pred h
Q 011254 421 F 421 (490)
Q Consensus 421 ~ 421 (490)
.
T Consensus 198 ~ 198 (584)
T PRK14952 198 D 198 (584)
T ss_pred C
Confidence 3
No 83
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=1.3e-13 Score=146.32 Aligned_cols=155 Identities=17% Similarity=0.264 Sum_probs=113.4
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++|+|++.+++.+...+.. ...+..||||||||+|||++|+++|+.+..
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 4689999999999998877666541 235678999999999999999999998743
Q ss_pred ------------cEEEEeccccCChHHHHHHHHhc------cCCeEEEEeccchhhhhhhhHhhhhhccccccccccccc
Q 011254 280 ------------DVYDLELTNLRGNMELRNLLIAT------ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVM 341 (490)
Q Consensus 280 ------------~~~~l~~s~~~~~~~l~~l~~~~------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ 341 (490)
+++.++.....+-+.++.+.... ..+.|++|||+|.+..
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~----------------------- 135 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK----------------------- 135 (451)
T ss_pred HHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------------------
Confidence 34445443333345555444322 3578999999997731
Q ss_pred ccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCC
Q 011254 342 NLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGIT 416 (490)
Q Consensus 342 ~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~ 416 (490)
...+.||..|+.. .+.+++|++||.+..|.+++.. |+ ..++|..++.++....+...+...
T Consensus 136 -------~~~n~LLk~lEep----~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~e 196 (451)
T PRK06305 136 -------EAFNSLLKTLEEP----PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQE 196 (451)
T ss_pred -------HHHHHHHHHhhcC----CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHc
Confidence 1346688888863 2347788888999999999988 76 569999999999877777665433
No 84
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=9.9e-14 Score=143.92 Aligned_cols=157 Identities=18% Similarity=0.329 Sum_probs=114.9
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC------------c
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------D 280 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------~ 280 (490)
..|.+|++++|++..++.+...+.. ...+.+||||||||+|||++++++|+.+.. +
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 5689999999999988877766642 234578999999999999999999998743 3
Q ss_pred EEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHH
Q 011254 281 VYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGM 354 (490)
Q Consensus 281 ~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 354 (490)
++.++.....+...++.++..+. .+.||+|||+|.+.. ..++.|
T Consensus 79 ~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------------------------~~~~~l 128 (367)
T PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------------------------AAFNAF 128 (367)
T ss_pred eEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------------------------HHHHHH
Confidence 34444333334467777776532 457999999986631 235667
Q ss_pred HHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCC
Q 011254 355 LNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEH 418 (490)
Q Consensus 355 L~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~ 418 (490)
+..++.. +...++|++|+.+..+.+++.+ |+ ..++++.|+.++...++...+...+.
T Consensus 129 l~~le~~----~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~ 185 (367)
T PRK14970 129 LKTLEEP----PAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGI 185 (367)
T ss_pred HHHHhCC----CCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCC
Confidence 7777753 2346778888888999999987 55 46899999999988777766654443
No 85
>PRK06893 DNA replication initiation factor; Validated
Probab=99.56 E-value=3.3e-14 Score=138.03 Aligned_cols=169 Identities=14% Similarity=0.210 Sum_probs=104.6
Q ss_pred cccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 210 VNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 210 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
+....+.+||++++.+... ....+.. .........++||||||||||+|++|+|+++ +..+..+++
T Consensus 7 ~~~~~~~~fd~f~~~~~~~--~~~~~~~---------~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 7 IHQIDDETLDNFYADNNLL--LLDSLRK---------NFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCCCcccccccccCChHH--HHHHHHH---------HhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 4456778999999765421 2222211 1111223457999999999999999999986 445555555
Q ss_pred cccCChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCC
Q 011254 287 TNLRGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCG 366 (490)
Q Consensus 287 s~~~~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~ 366 (490)
.... ....+++....+..+|+||||+.+.+ ....... |++.++.....
T Consensus 76 ~~~~--~~~~~~~~~~~~~dlLilDDi~~~~~-------------------------~~~~~~~---l~~l~n~~~~~-- 123 (229)
T PRK06893 76 SKSQ--YFSPAVLENLEQQDLVCLDDLQAVIG-------------------------NEEWELA---IFDLFNRIKEQ-- 123 (229)
T ss_pred HHhh--hhhHHHHhhcccCCEEEEeChhhhcC-------------------------ChHHHHH---HHHHHHHHHHc--
Confidence 4321 12234455566778999999997743 1111223 34444433322
Q ss_pred CcEEEEEecC-CCCCCC---ccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCch
Q 011254 367 DERIIIFTTN-HKDRLD---PAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLF 421 (490)
Q Consensus 367 ~~~iiI~TTN-~~~~LD---~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~ 421 (490)
+..++|+|+| .|..++ |+|.++.+.+..++++.|+.+.+.+++++.....+..+.
T Consensus 124 ~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~ 182 (229)
T PRK06893 124 GKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELS 182 (229)
T ss_pred CCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 2245555554 566554 889885556688999999999999999977654433333
No 86
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=7.3e-14 Score=151.18 Aligned_cols=156 Identities=17% Similarity=0.311 Sum_probs=114.8
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCc------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD------------ 280 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~------------ 280 (490)
..|.+|++|+|++.+++.|...+.. ...+..|||+||||||||++|+++|+.+.+.
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQE------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 5689999999999998877765541 1234689999999999999999999998652
Q ss_pred ------------EEEEeccccCChHHHHHHHHhc------cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 281 ------------VYDLELTNLRGNMELRNLLIAT------ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 281 ------------~~~l~~s~~~~~~~l~~l~~~~------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
++.++...-.+-+.++.+.... ....||||||+|.+-
T Consensus 78 sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------------------- 132 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------------------- 132 (624)
T ss_pred HHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-------------------------
Confidence 5555543323344555543322 245799999999872
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCC
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITE 417 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~ 417 (490)
....+.||..|+.. ...+++|++||.+..+.+.+++ |+ .+|+|+.++.++....+...+...+
T Consensus 133 -----~~a~naLLk~LEEP----~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~eg 195 (624)
T PRK14959 133 -----REAFNALLKTLEEP----PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREG 195 (624)
T ss_pred -----HHHHHHHHHHhhcc----CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcC
Confidence 12356788888763 2348888999999999988887 76 5789999999998887777665443
No 87
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=5.8e-14 Score=153.20 Aligned_cols=156 Identities=16% Similarity=0.259 Sum_probs=118.1
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++|+|++.+++.|...+.. ...+..||||||||||||++|+++|+.+++
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 3588999999999999888776651 234678999999999999999999999854
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 280 -----------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 280 -----------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
+++.++..+-.+.++++.+..... +.-|++|||+|.+-
T Consensus 78 ~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------------------- 132 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------------------- 132 (576)
T ss_pred HHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-------------------------
Confidence 245555444344556777765542 34699999999773
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCC
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITE 417 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~ 417 (490)
....+.||..|+.. .+.+++|++||.+++|.+.++. |+ .+++|..++.++....+...+...+
T Consensus 133 -----~~a~naLLk~LEep----p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~eg 195 (576)
T PRK14965 133 -----TNAFNALLKTLEEP----PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEG 195 (576)
T ss_pred -----HHHHHHHHHHHHcC----CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhC
Confidence 22457788888864 3458888999999999999987 65 5789999999888777776665443
No 88
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.7e-14 Score=150.75 Aligned_cols=192 Identities=19% Similarity=0.234 Sum_probs=130.5
Q ss_pred cccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc----CcEEEEeccccCCh--
Q 011254 219 DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLELTNLRGN-- 292 (490)
Q Consensus 219 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~----~~~~~l~~s~~~~~-- 292 (490)
.+++..+..|++..++...+ +.-+..+||+||+|||||.|++++++++. +++..++|+.+...
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 45566666666655433222 33346799999999999999999999984 45667888887432
Q ss_pred HH----HHHHHHhc--cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCC
Q 011254 293 ME----LRNLLIAT--ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCG 366 (490)
Q Consensus 293 ~~----l~~l~~~~--~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~ 366 (490)
.. |..+|..+ ..|+||++||+||+++..+..+. +.......+..+||.+--..-..+
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~-----------------q~~~~~~rla~flnqvi~~y~~~~ 539 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENG-----------------QDGVVSERLAAFLNQVIKIYLKRN 539 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCC-----------------cchHHHHHHHHHHHHHHHHHHccC
Confidence 23 44444444 37999999999999861111110 122233445556644332223334
Q ss_pred CcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCC-CCchHHHHHhhhcc-CCCHHHH
Q 011254 367 DERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITE-HPLFLEVEGLIEKA-KVTPADV 438 (490)
Q Consensus 367 ~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~-~~l~~~i~~l~~~~-~~tpa~i 438 (490)
..+.+|+|.+....|.|-|..|++|+.++.++.|...+|.+|+.+.+.... ...+.+++-+..++ +|.+-|+
T Consensus 540 ~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL 613 (952)
T KOG0735|consen 540 RKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDL 613 (952)
T ss_pred cEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhH
Confidence 457899999999999999999999999999999999999999998886542 33455555555443 3666555
No 89
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.5e-13 Score=146.73 Aligned_cols=158 Identities=18% Similarity=0.306 Sum_probs=114.8
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++++|++.+.+.+...+.. ...+..||||||||+|||++|+++|..+++
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 4688999999999999888776641 234567999999999999999999998763
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 280 -----------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 280 -----------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
+++.++.+.-.+-..++.+...+. .+.|++|||+|.+..
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~------------------------ 133 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK------------------------ 133 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH------------------------
Confidence 344454433334445555544332 457999999997731
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCC
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHP 419 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~ 419 (490)
...+.||..++.. ....++|++|+.++.+.+++.+ |+ ..++|+.++.++....+...+...+..
T Consensus 134 ------~a~naLLk~LEep----p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~ 197 (486)
T PRK14953 134 ------EAFNALLKTLEEP----PPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIE 197 (486)
T ss_pred ------HHHHHHHHHHhcC----CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 2346678887764 2346777778888899999887 66 479999999999888888766554433
No 90
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.53 E-value=1.9e-13 Score=153.47 Aligned_cols=158 Identities=22% Similarity=0.237 Sum_probs=114.2
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHH----
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMEL---- 295 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l---- 295 (490)
+..|.+++|++|++.+..... .+......++|+||||||||++++++|+.++.+++.++++.+.+...+
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 478999999999887763322 122233468999999999999999999999999999998876443332
Q ss_pred -----------HHHHHhcc-CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccc--
Q 011254 296 -----------RNLLIATE-NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGL-- 361 (490)
Q Consensus 296 -----------~~l~~~~~-~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl-- 361 (490)
.+.+..+. ...||+|||||.+.. + ......+.||..+|--
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~--~------------------------~~g~~~~aLlevld~~~~ 449 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSS--D------------------------MRGDPASALLEVLDPEQN 449 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCCEEEEEChhhccc--c------------------------cCCCHHHHHHHHhccccE
Confidence 22333332 345899999998843 1 0112345677777620
Q ss_pred --cc-------CCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 362 --WS-------SCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 362 --~s-------~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
+. ..-.++++|+|+|.. .|+|+|+. ||. .|.++.++.++..+|+++|+.
T Consensus 450 ~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 450 VAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 00 011458999999987 49999999 995 689999999999999999984
No 91
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.53 E-value=1.2e-12 Score=135.45 Aligned_cols=199 Identities=16% Similarity=0.106 Sum_probs=124.3
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc---------CcEEEEec
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---------FDVYDLEL 286 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---------~~~~~l~~ 286 (490)
...+.+.|.++..+.|...+...+.. ..+..+++|||||||||++++++++.+. +.++.+++
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 33467899998888888877654431 2245799999999999999999998763 56777887
Q ss_pred cccCChH--------------------------HHHHHHHh---ccCCeEEEEeccchhhhhhhhHhhhhhccccccccc
Q 011254 287 TNLRGNM--------------------------ELRNLLIA---TENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVI 337 (490)
Q Consensus 287 s~~~~~~--------------------------~l~~l~~~---~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~ 337 (490)
....+.. .+..++.. ..++.||+|||+|.+..
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~------------------- 143 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG------------------- 143 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc-------------------
Confidence 6543211 11222222 23467999999998852
Q ss_pred ccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCC---CCCccccCCCcee-eEEEeCCCCHHHHHHHHHHhh
Q 011254 338 QPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKD---RLDPAFLRPGRMD-VHIHMSYCTSCGFKMLASSYL 413 (490)
Q Consensus 338 ~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~---~LD~aLlRpGR~d-~~I~~~~p~~~~r~~L~~~~l 413 (490)
. ....+..|+...+-. ...+..+.+|+++|.++ .+++.+.+ ||. ..|+|+.++.++...+++..+
T Consensus 144 ------~--~~~~L~~l~~~~~~~-~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~ 212 (365)
T TIGR02928 144 ------D--DDDLLYQLSRARSNG-DLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRA 212 (365)
T ss_pred ------C--CcHHHHhHhcccccc-CCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHH
Confidence 0 012344444431111 11224588899999875 68888877 664 679999999999999999877
Q ss_pred CC--CCCCchHHHHHhhhccCCCHHHHHHHHH-cCCCHHHHHHHHHHHHHHHh
Q 011254 414 GI--TEHPLFLEVEGLIEKAKVTPADVAEQLM-RNEVPEIALRELIQFLEIKR 463 (490)
Q Consensus 414 ~~--~~~~l~~~i~~l~~~~~~tpa~i~~~l~-~~~~~~~al~~l~~~l~~~~ 463 (490)
.. ....+.+++..++ +.... ..+|+..+++-+..+.+...
T Consensus 213 ~~~~~~~~~~~~~l~~i----------~~~~~~~~Gd~R~al~~l~~a~~~a~ 255 (365)
T TIGR02928 213 EKAFYDGVLDDGVIPLC----------AALAAQEHGDARKAIDLLRVAGEIAE 255 (365)
T ss_pred HhhccCCCCChhHHHHH----------HHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 42 1112222222222 11111 23677777776666665443
No 92
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.53 E-value=2.6e-13 Score=153.89 Aligned_cols=157 Identities=17% Similarity=0.214 Sum_probs=112.0
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----------cCcEEE
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 283 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~ 283 (490)
.|.+++.++|.++...++++.+. ...+.+.+|+||||||||++|+.+|..+ +..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~-------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILL-------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHh-------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 46789999999887666655443 1234678999999999999999999976 366788
Q ss_pred EeccccCC--------hHHHHHHHHhcc---CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHH
Q 011254 284 LELTNLRG--------NMELRNLLIATE---NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLS 352 (490)
Q Consensus 284 l~~s~~~~--------~~~l~~l~~~~~---~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 352 (490)
++++.+.. ...++.++..+. .++|||||||+.+.+.....+ . ...-+
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-------------------~---~d~~n 306 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-------------------Q---GDAAN 306 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-------------------c---ccHHH
Confidence 88776531 257888888663 579999999999975221100 0 01111
Q ss_pred HHHHHhcccccCCCCcEEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 353 GMLNFIDGLWSSCGDERIIIFTTNHKD-----RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 353 ~LL~~idgl~s~~~~~~iiI~TTN~~~-----~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
-|+..+. .+++.+|+||+..+ .+||||.| ||. .|.++.|+.++...|++.+..
T Consensus 307 ~Lkp~l~------~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~ 364 (852)
T TIGR03345 307 LLKPALA------RGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAP 364 (852)
T ss_pred HhhHHhh------CCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHH
Confidence 2333332 24688999888754 48999999 995 799999999999999764443
No 93
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.9e-13 Score=145.00 Aligned_cols=159 Identities=18% Similarity=0.282 Sum_probs=119.5
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc--------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-------------- 278 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-------------- 278 (490)
..|.+|++|+|++.+++.+...+. ....+..||||||||+|||++|+++|+.+.
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~------------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALD------------NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 468999999999999888877664 124567899999999999999999999873
Q ss_pred ----------CcEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 279 ----------FDVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 279 ----------~~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
.+++.++.++-.+-..++.+..... ..-|++|||+|.+-
T Consensus 76 ~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------------------- 130 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------------------- 130 (535)
T ss_pred HHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-------------------------
Confidence 2455555443334567777776532 34699999998772
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPL 420 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l 420 (490)
....+.||..|+... ....+|++|+.+..|.++++. |. .+++|..++.++....+...+...+...
T Consensus 131 -----~~A~NALLK~LEEpp----~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i 196 (535)
T PRK08451 131 -----KEAFNALLKTLEEPP----SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSY 196 (535)
T ss_pred -----HHHHHHHHHHHhhcC----CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 234567888888652 346788888888999999998 74 6899999999998877777666554433
No 94
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.4e-13 Score=148.14 Aligned_cols=159 Identities=16% Similarity=0.289 Sum_probs=119.0
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCc------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD------------ 280 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~------------ 280 (490)
..|.+|++|+|++.+++.|...+.. ...+.++|||||+|+|||++|+++|+.+++.
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 5789999999999999888776541 2345689999999999999999999988643
Q ss_pred -----------------EEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhccccccccc
Q 011254 281 -----------------VYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVI 337 (490)
Q Consensus 281 -----------------~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~ 337 (490)
++.++..+..+-.+++.++..+. ..-|+||||+|.+.
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-------------------- 145 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-------------------- 145 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------------
Confidence 23333333334567777766543 45799999998772
Q ss_pred ccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCC
Q 011254 338 QPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITE 417 (490)
Q Consensus 338 ~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~ 417 (490)
....+.||..|+.. .+.+++|++|+.++++.+.++. |+ ..++|..++.++....+...+...+
T Consensus 146 ----------~~a~naLLKtLEeP----p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~keg 208 (598)
T PRK09111 146 ----------TAAFNALLKTLEEP----PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEG 208 (598)
T ss_pred ----------HHHHHHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 22457788888764 3447888888988899888887 76 6799999999998888887776554
Q ss_pred CCc
Q 011254 418 HPL 420 (490)
Q Consensus 418 ~~l 420 (490)
..+
T Consensus 209 i~i 211 (598)
T PRK09111 209 VEV 211 (598)
T ss_pred CCC
Confidence 433
No 95
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.2e-13 Score=147.66 Aligned_cols=156 Identities=17% Similarity=0.275 Sum_probs=115.5
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++|+|++.+++.+...+.. ...+..||||||||+|||++|+++|+.+++
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 4689999999999999888776641 234568999999999999999999999864
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhc------cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 280 -----------DVYDLELTNLRGNMELRNLLIAT------ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 280 -----------~~~~l~~s~~~~~~~l~~l~~~~------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
+++.++...-.+-.+++.+...+ ...-|++|||+|.+-
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------------------- 132 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------------------- 132 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-------------------------
Confidence 34444433223345666665432 245799999999772
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCC
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITE 417 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~ 417 (490)
....+.||..++.. +...++|++|+.+..|.++++. |+ ..++|..++.++....+...+...+
T Consensus 133 -----~~a~naLLK~LEep----p~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~eg 195 (563)
T PRK06647 133 -----NSAFNALLKTIEEP----PPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQ 195 (563)
T ss_pred -----HHHHHHHHHhhccC----CCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 22456788888853 3458888888889999999987 76 4689999999998888877664443
No 96
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.52 E-value=1.4e-13 Score=148.86 Aligned_cols=182 Identities=19% Similarity=0.262 Sum_probs=117.4
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----------cCcEE
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVY 282 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~ 282 (490)
..|.+|++++|.+...+.+...+. .+.+..+|||||||||||++|+++++++ +.+++
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~-------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi 125 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALC-------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFV 125 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEE
Confidence 568999999999988777764321 1235679999999999999999998753 35788
Q ss_pred EEeccccC-ChHHHH-HHH--------------------------HhccCCeEEEEeccchhhhhhhhHhhhhhcccccc
Q 011254 283 DLELTNLR-GNMELR-NLL--------------------------IATENKSILVVEDIDCSIELQDRFAKAKATNAMDL 334 (490)
Q Consensus 283 ~l~~s~~~-~~~~l~-~l~--------------------------~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~ 334 (490)
.++++... ++..+. .++ .....+.+|||||||.+-.
T Consensus 126 ~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~---------------- 189 (531)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP---------------- 189 (531)
T ss_pred EEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH----------------
Confidence 88876421 111110 011 0112457999999998843
Q ss_pred cccccccccCCchhhHHHHHHHHhccc--------c-----------------cCCCCcEEEEEecCCCCCCCccccCCC
Q 011254 335 NVIQPVMNLNQVPQVTLSGMLNFIDGL--------W-----------------SSCGDERIIIFTTNHKDRLDPAFLRPG 389 (490)
Q Consensus 335 ~~~~~~~~~~~~~~~~ls~LL~~idgl--------~-----------------s~~~~~~iiI~TTN~~~~LD~aLlRpG 389 (490)
...+.||..|+.- . ..+.+-++|++|||.++.|+|++++
T Consensus 190 --------------~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs-- 253 (531)
T TIGR02902 190 --------------VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS-- 253 (531)
T ss_pred --------------HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--
Confidence 1122233333110 0 0011236777888999999999998
Q ss_pred ceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhccCCCHHHHHH
Q 011254 390 RMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKAKVTPADVAE 440 (490)
Q Consensus 390 R~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~~~tpa~i~~ 440 (490)
|+ ..|.|+.++.+++..|+++.+...+..+.++..+++........++.+
T Consensus 254 R~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~n~Rel~n 303 (531)
T TIGR02902 254 RC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYASNGREAVN 303 (531)
T ss_pred hh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhhhHHHHHH
Confidence 87 578999999999999999988765555544444444433333344333
No 97
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.52 E-value=2.1e-13 Score=142.68 Aligned_cols=209 Identities=20% Similarity=0.212 Sum_probs=125.6
Q ss_pred cc-ccccChhHHHHHHHHHHHHHHcHHHHHHh--CC-CCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCC--
Q 011254 218 FD-TLAMDSDMKQMIMDDLERFVKRKEFYRNV--GK-AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRG-- 291 (490)
Q Consensus 218 f~-~l~g~~~~k~~i~~~l~~~l~~~~~y~~~--g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~-- 291 (490)
++ .|+|+++.|+.+...+...+.+-..-... +. ..+.++||+||||||||++|+++|..++.+++.++++.+..
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~g 148 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAG 148 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCC
Confidence 54 37999999999877665433321110000 11 23577999999999999999999999999999999887632
Q ss_pred ------hHHHHHHHHh------ccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhc
Q 011254 292 ------NMELRNLLIA------TENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFID 359 (490)
Q Consensus 292 ------~~~l~~l~~~------~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~id 359 (490)
...+..++.. ...++||||||||.+..... +... ..+.....+.+.||..||
T Consensus 149 yvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~--~~~~--------------~~d~s~~~vQ~~LL~~Le 212 (412)
T PRK05342 149 YVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSE--NPSI--------------TRDVSGEGVQQALLKILE 212 (412)
T ss_pred cccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccC--CCCc--------------CCCcccHHHHHHHHHHHh
Confidence 1223444332 23689999999999854110 0000 001112346788999998
Q ss_pred ccc----cCCC-----CcEEEEEecCCCC---------------------------------------------------
Q 011254 360 GLW----SSCG-----DERIIIFTTNHKD--------------------------------------------------- 379 (490)
Q Consensus 360 gl~----s~~~-----~~~iiI~TTN~~~--------------------------------------------------- 379 (490)
|-. ...| .+.++|.|+|-..
T Consensus 213 g~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~ 292 (412)
T PRK05342 213 GTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIK 292 (412)
T ss_pred cCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHH
Confidence 742 1111 2356777777511
Q ss_pred -CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhc----cCCCHHHHHHHHHcCCCH
Q 011254 380 -RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEK----AKVTPADVAEQLMRNEVP 448 (490)
Q Consensus 380 -~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~----~~~tpa~i~~~l~~~~~~ 448 (490)
.+.|+|+ ||+|..+.|...+.+.+.+|+...++ .+..++..++.. ..+|+.-+..+.-+..++
T Consensus 293 ~gf~PEfl--gRld~iv~f~~L~~~~L~~Il~~~~~----~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~ 360 (412)
T PRK05342 293 FGLIPEFI--GRLPVVATLEELDEEALVRILTEPKN----ALVKQYQKLFEMDGVELEFTDEALEAIAKKAIER 360 (412)
T ss_pred HhhhHHHh--CCCCeeeecCCCCHHHHHHHHHHHHH----HHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCC
Confidence 0123333 59999999999999998888874331 122344444332 236666554444333333
No 98
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.5e-13 Score=143.88 Aligned_cols=155 Identities=13% Similarity=0.243 Sum_probs=111.6
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++|+|++.+++.|...+.. ...+..||||||||||||++|+++|+.+.+
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRM------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHh------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 4689999999999998887665541 234568999999999999999999999865
Q ss_pred -------------------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccc
Q 011254 280 -------------------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDL 334 (490)
Q Consensus 280 -------------------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~ 334 (490)
+++.++.....+-++++.+..... ..-|+||||+|.+-.
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~---------------- 141 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI---------------- 141 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH----------------
Confidence 233333333233456776655552 457999999987731
Q ss_pred cccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 335 NVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 335 ~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
...+.||..++.. ....++|++|+.+..+-+++.. |. ..++|..++.++....+...+.
T Consensus 142 --------------~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~ 200 (397)
T PRK14955 142 --------------AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICE 200 (397)
T ss_pred --------------HHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHH
Confidence 1345677777743 2346777777888888888887 65 4689999999888777776664
Q ss_pred CC
Q 011254 415 IT 416 (490)
Q Consensus 415 ~~ 416 (490)
..
T Consensus 201 ~~ 202 (397)
T PRK14955 201 AE 202 (397)
T ss_pred Hc
Confidence 33
No 99
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.51 E-value=5.8e-14 Score=137.22 Aligned_cols=160 Identities=22% Similarity=0.279 Sum_probs=110.0
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC------cEEEEe
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------DVYDLE 285 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------~~~~l~ 285 (490)
-..|.+|++++|++.+.+.+...+.. . --..||||||||||||+.|+|+|.+++. .+..++
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~-~------------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR-R------------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh-c------------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 56799999999999999998887763 1 1235999999999999999999999865 233444
Q ss_pred ccccCChH-------HHHHHHHhc----c----CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhH
Q 011254 286 LTNLRGNM-------ELRNLLIAT----E----NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVT 350 (490)
Q Consensus 286 ~s~~~~~~-------~l~~l~~~~----~----~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (490)
.++-.+-+ ...++.... . ..-|++|||.|.+. ..+
T Consensus 96 aSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt------------------------------sda 145 (346)
T KOG0989|consen 96 ASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT------------------------------SDA 145 (346)
T ss_pred ccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh------------------------------HHH
Confidence 44432211 111222111 1 12699999999884 234
Q ss_pred HHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCch
Q 011254 351 LSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLF 421 (490)
Q Consensus 351 ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~ 421 (490)
.+.|...||... ....+|+.||..++|.+.+.. |. .++.|+....+....-++.....++.+..
T Consensus 146 q~aLrr~mE~~s----~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d 209 (346)
T KOG0989|consen 146 QAALRRTMEDFS----RTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDID 209 (346)
T ss_pred HHHHHHHHhccc----cceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCC
Confidence 567888888742 347889999999999998987 76 45677766665555555555555544443
No 100
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.51 E-value=8.6e-13 Score=130.67 Aligned_cols=130 Identities=22% Similarity=0.211 Sum_probs=92.0
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHH-------------H--------------------HHH
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMEL-------------R--------------------NLL 299 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l-------------~--------------------~l~ 299 (490)
.+.+||+||||||||++|+++|..+|.+++.+++..-....++ . .++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 3568999999999999999999999999999987653221111 0 112
Q ss_pred HhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccc-cC-----------CCC
Q 011254 300 IATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLW-SS-----------CGD 367 (490)
Q Consensus 300 ~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~-s~-----------~~~ 367 (490)
.....+.+|+|||||.+- ..+.+.|+..|+.-. .- ...
T Consensus 101 ~A~~~g~~lllDEi~r~~------------------------------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~ 150 (262)
T TIGR02640 101 LAVREGFTLVYDEFTRSK------------------------------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHP 150 (262)
T ss_pred HHHHcCCEEEEcchhhCC------------------------------HHHHHHHHHHhcCCeEEccCCCCCCceEecCC
Confidence 223456899999999762 223455666664210 00 012
Q ss_pred cEEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCC
Q 011254 368 ERIIIFTTNHKD-----RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGI 415 (490)
Q Consensus 368 ~~iiI~TTN~~~-----~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~ 415 (490)
+..||+|+|... .++++|++ || ..+++++|+.+...+|++..++.
T Consensus 151 ~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~~ 200 (262)
T TIGR02640 151 EFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTDV 200 (262)
T ss_pred CCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhCC
Confidence 356899999763 56899999 98 78999999999999999877643
No 101
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.3e-13 Score=146.39 Aligned_cols=155 Identities=13% Similarity=0.247 Sum_probs=113.2
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCc------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD------------ 280 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~------------ 280 (490)
..|.+|++++|++.+++.|...+. ....+.+|||+||||||||++|+++|+.+.+.
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~------------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLR------------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 458899999999999888766543 23456789999999999999999999998662
Q ss_pred --------------------EEEEeccccCChHHHHHHHHhc------cCCeEEEEeccchhhhhhhhHhhhhhcccccc
Q 011254 281 --------------------VYDLELTNLRGNMELRNLLIAT------ENKSILVVEDIDCSIELQDRFAKAKATNAMDL 334 (490)
Q Consensus 281 --------------------~~~l~~s~~~~~~~l~~l~~~~------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~ 334 (490)
+..++.....+.++++.+.... ...-|++|||+|.+-.
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---------------- 141 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---------------- 141 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH----------------
Confidence 2233332223346677766555 2456999999987731
Q ss_pred cccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 335 NVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 335 ~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
...+.||..|+.. ....++|++|+.+..|-+++.. |. ..++|..++.++....+...+.
T Consensus 142 --------------~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~ 200 (620)
T PRK14954 142 --------------AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICR 200 (620)
T ss_pred --------------HHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHH
Confidence 2356788888864 2346777777888899889887 65 6799999999988777776654
Q ss_pred CC
Q 011254 415 IT 416 (490)
Q Consensus 415 ~~ 416 (490)
..
T Consensus 201 ~e 202 (620)
T PRK14954 201 AE 202 (620)
T ss_pred Hc
Confidence 43
No 102
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.51 E-value=3.1e-13 Score=130.25 Aligned_cols=167 Identities=16% Similarity=0.204 Sum_probs=104.7
Q ss_pred ccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecc
Q 011254 211 NLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT 287 (490)
Q Consensus 211 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s 287 (490)
+...+.+|++.+.. ..+.+++.+..+.. ...++.++|+||||||||++++++++++ +.+++.++++
T Consensus 7 ~~~~~~~~~~~~~~--~~~~~~~~l~~~~~---------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 7 GLPDDPTFDNFYAG--GNAELLAALRQLAA---------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CCCCchhhcCcCcC--CcHHHHHHHHHHHh---------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 34556789998832 33444555554432 1235679999999999999999999887 4678888887
Q ss_pred ccCChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCC
Q 011254 288 NLRGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGD 367 (490)
Q Consensus 288 ~~~~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~ 367 (490)
.+.. ....++.......+|+|||+|.+.. ... ....|...++..... +
T Consensus 76 ~~~~--~~~~~~~~~~~~~lLvIDdi~~l~~-------------------------~~~---~~~~L~~~l~~~~~~--~ 123 (226)
T TIGR03420 76 ELAQ--ADPEVLEGLEQADLVCLDDVEAIAG-------------------------QPE---WQEALFHLYNRVREA--G 123 (226)
T ss_pred HHHH--hHHHHHhhcccCCEEEEeChhhhcC-------------------------ChH---HHHHHHHHHHHHHHc--C
Confidence 7642 2234444455667999999997732 000 112344444433222 1
Q ss_pred cEEEEEecC-CCCCCC---ccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCCCCCCchHH
Q 011254 368 ERIIIFTTN-HKDRLD---PAFLRPGRM--DVHIHMSYCTSCGFKMLASSYLGITEHPLFLE 423 (490)
Q Consensus 368 ~~iiI~TTN-~~~~LD---~aLlRpGR~--d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~ 423 (490)
.. +|+|++ .+..++ +.|.+ |+ ..+|+++.|+.+++..+++.+.......+.++
T Consensus 124 ~~-iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~ 182 (226)
T TIGR03420 124 GR-LLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDE 182 (226)
T ss_pred Ce-EEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 23 445555 444432 66776 55 57899999999999999887664333333333
No 103
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=5.8e-13 Score=146.01 Aligned_cols=154 Identities=19% Similarity=0.303 Sum_probs=114.9
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++++|++.+++.|...+.. .....+||||||||||||++|+++|+.+++
T Consensus 10 yRP~~f~~liGq~~i~~~L~~~l~~------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 10 YRPQRFDELVGQEAIATTLKNALIS------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred hCCCcHhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 4689999999999998888766652 123457999999999999999999999865
Q ss_pred -------------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccc
Q 011254 280 -------------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPV 340 (490)
Q Consensus 280 -------------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 340 (490)
+++.++.....+-..+++++..+. ..-|+||||+|.+-
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt----------------------- 134 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS----------------------- 134 (620)
T ss_pred cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-----------------------
Confidence 344454433344567888876653 34699999999772
Q ss_pred cccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCC
Q 011254 341 MNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGI 415 (490)
Q Consensus 341 ~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~ 415 (490)
....+.||..|+.. ....++|++|+.++.|-++++. |+ ..++|..++.++....+...+..
T Consensus 135 -------~~a~naLLK~LEeP----p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~k 195 (620)
T PRK14948 135 -------TAAFNALLKTLEEP----PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEK 195 (620)
T ss_pred -------HHHHHHHHHHHhcC----CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHH
Confidence 22457789998853 3457888888889999999987 76 66899989888876666655544
No 104
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.50 E-value=2.4e-13 Score=151.54 Aligned_cols=155 Identities=21% Similarity=0.266 Sum_probs=108.1
Q ss_pred CccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----------cCcEEEEec
Q 011254 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLEL 286 (490)
Q Consensus 217 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~l~~ 286 (490)
.++.++|.++..+.+++.+.. .-+..+||+||||||||++|+++|..+ +..++.+++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 367788888777777765542 224678999999999999999999874 567777766
Q ss_pred cccC--------ChHHHHHHHHhc--cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHH
Q 011254 287 TNLR--------GNMELRNLLIAT--ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLN 356 (490)
Q Consensus 287 s~~~--------~~~~l~~l~~~~--~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 356 (490)
+.+. .+..++.++..+ ..++||||||||.+++.... ......+..+|.
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~----------------------~~g~~d~~nlLk 308 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA----------------------SGGQVDAANLIK 308 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC----------------------CCcHHHHHHHHH
Confidence 5542 134566776654 35789999999999752210 000111222222
Q ss_pred HhcccccCCCCcEEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 357 FIDGLWSSCGDERIIIFTTNHKD-----RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 357 ~idgl~s~~~~~~iiI~TTN~~~-----~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
.+-. ..++.+|++||.++ .+|+||.| ||+ .|+++.|+.+++..|++.+..
T Consensus 309 ---p~L~--~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 309 ---PLLS--SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred ---HHHh--CCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHH
Confidence 1112 24588999999865 57999999 996 799999999999999986543
No 105
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.50 E-value=8.6e-13 Score=150.00 Aligned_cols=156 Identities=17% Similarity=0.242 Sum_probs=114.3
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----------cCcEEE
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 283 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~ 283 (490)
.|-.++.++|.+...+++++.+. ...+...+|+||||||||++++++|..+ +++++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHh-------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 36679999999887666666554 1234678999999999999999999988 789999
Q ss_pred EeccccCC--------hHHHHHHHHhc---cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHH
Q 011254 284 LELTNLRG--------NMELRNLLIAT---ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLS 352 (490)
Q Consensus 284 l~~s~~~~--------~~~l~~l~~~~---~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 352 (490)
++++.+.. ...++.+|... ..++||||||||.+.+..... ......
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-----------------------~~~d~~ 296 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-----------------------GAMDAG 296 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-----------------------cchhHH
Confidence 98877521 23678888764 368999999999997522100 001111
Q ss_pred HHH-HHhcccccCCCCcEEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 353 GML-NFIDGLWSSCGDERIIIFTTNHKD-----RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 353 ~LL-~~idgl~s~~~~~~iiI~TTN~~~-----~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
.+| ..+ . .+++.+|+||+..+ .+|+||.| ||+ .|.++.|+.+++..|++....
T Consensus 297 ~~lkp~l----~--~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 297 NMLKPAL----A--RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred HHhcchh----h--cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhh
Confidence 222 222 1 24688999999887 48999999 997 589999999999998886654
No 106
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.50 E-value=7.3e-13 Score=135.27 Aligned_cols=159 Identities=13% Similarity=0.208 Sum_probs=105.7
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc-----CcEEEEec
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FDVYDLEL 286 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-----~~~~~l~~ 286 (490)
-..|.+|++++|.+++++.+...+. . +. ...+|||||||||||++|+++|+++. .++..+++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~----~-------~~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVD----S-------PN--LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHh----C-------CC--CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 3578999999999988887766543 1 11 12699999999999999999999884 34566666
Q ss_pred cccCC--------------------------hHHHHHHHHhc-------cCCeEEEEeccchhhhhhhhHhhhhhccccc
Q 011254 287 TNLRG--------------------------NMELRNLLIAT-------ENKSILVVEDIDCSIELQDRFAKAKATNAMD 333 (490)
Q Consensus 287 s~~~~--------------------------~~~l~~l~~~~-------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~ 333 (490)
+++.. ...++.++... ..+.+|+|||+|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------------- 139 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------------- 139 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH---------------
Confidence 54310 11223222221 2356999999997631
Q ss_pred ccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011254 334 LNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYL 413 (490)
Q Consensus 334 ~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l 413 (490)
.....|+..++.... ...+|++|+.+..+.++|.. |+ ..+++..|+.++...++...+
T Consensus 140 ---------------~~~~~L~~~le~~~~----~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~ 197 (337)
T PRK12402 140 ---------------DAQQALRRIMEQYSR----TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIA 197 (337)
T ss_pred ---------------HHHHHHHHHHHhccC----CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHH
Confidence 112234555554322 24466677777788888877 65 579999999999988888877
Q ss_pred CCCCCCc
Q 011254 414 GITEHPL 420 (490)
Q Consensus 414 ~~~~~~l 420 (490)
...+..+
T Consensus 198 ~~~~~~~ 204 (337)
T PRK12402 198 EAEGVDY 204 (337)
T ss_pred HHcCCCC
Confidence 6544333
No 107
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.49 E-value=5.1e-13 Score=149.02 Aligned_cols=159 Identities=14% Similarity=0.282 Sum_probs=111.6
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHHH
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNLL 299 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l~ 299 (490)
.|+|+++.++.|.+.+......- ... ..+...+||+||||||||++|+++|..++.+++.++++++.....+.+++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~~-~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL---GHE-HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc---cCC-CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 46888888888888776432210 000 11223589999999999999999999999999999998874322222222
Q ss_pred H---------------h---ccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhc-c
Q 011254 300 I---------------A---TENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFID-G 360 (490)
Q Consensus 300 ~---------------~---~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~id-g 360 (490)
. . ....+||+|||||.+-+ ...+.||..|| |
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~------------------------------~v~~~LLq~ld~G 584 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP------------------------------DVFNLLLQVMDNG 584 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH------------------------------HHHHHHHHHHhcC
Confidence 1 1 12458999999997732 24566777776 3
Q ss_pred ccc-CCC-----CcEEEEEecCCC-------------------------CCCCccccCCCceeeEEEeCCCCHHHHHHHH
Q 011254 361 LWS-SCG-----DERIIIFTTNHK-------------------------DRLDPAFLRPGRMDVHIHMSYCTSCGFKMLA 409 (490)
Q Consensus 361 l~s-~~~-----~~~iiI~TTN~~-------------------------~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~ 409 (490)
... ..| .+.|||+|||.- ..+.|.|+. |+|..|.|+..+.+...+|+
T Consensus 585 ~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~ 662 (758)
T PRK11034 585 TLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVV 662 (758)
T ss_pred eeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHH
Confidence 221 111 357899999921 125577777 99999999999999999999
Q ss_pred HHhhC
Q 011254 410 SSYLG 414 (490)
Q Consensus 410 ~~~l~ 414 (490)
..++.
T Consensus 663 ~~~l~ 667 (758)
T PRK11034 663 DKFIV 667 (758)
T ss_pred HHHHH
Confidence 87774
No 108
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=6.3e-13 Score=145.64 Aligned_cols=157 Identities=15% Similarity=0.253 Sum_probs=114.0
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++|+|++.+++.|...+.. ...+..||||||||||||++|+++|+.+++
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAE------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 4689999999999999888665541 123456899999999999999999998753
Q ss_pred ------------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhccccccccccccc
Q 011254 280 ------------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVM 341 (490)
Q Consensus 280 ------------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ 341 (490)
+++.++.+...+.++++.+..... ..-||||||+|.+.
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------------------ 133 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------------------ 133 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------------------
Confidence 344445433344556666654332 45799999999773
Q ss_pred ccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCC
Q 011254 342 NLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEH 418 (490)
Q Consensus 342 ~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~ 418 (490)
...++.||..++... ...++|++|+..+.+.+.+.. |+ ..++|..++..+...++...+...+.
T Consensus 134 ------~~a~naLLk~LEepp----~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl 197 (585)
T PRK14950 134 ------TAAFNALLKTLEEPP----PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGI 197 (585)
T ss_pred ------HHHHHHHHHHHhcCC----CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 123567888887642 347788888888888888876 65 56899999999888777776654433
No 109
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.48 E-value=2.5e-12 Score=141.00 Aligned_cols=193 Identities=20% Similarity=0.229 Sum_probs=125.7
Q ss_pred cccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----------cCcEEEEeccc
Q 011254 219 DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLELTN 288 (490)
Q Consensus 219 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~l~~s~ 288 (490)
+.|.+-++..++|...|...+.. ......+++|||||||||.+++.+..++ .+.++.++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 56777777777777766654432 2222335699999999999999998876 25678888865
Q ss_pred cCCh-----------------------HHHHHHHHhcc----CCeEEEEeccchhhhhhhhHhhhhhccccccccccccc
Q 011254 289 LRGN-----------------------MELRNLLIATE----NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVM 341 (490)
Q Consensus 289 ~~~~-----------------------~~l~~l~~~~~----~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ 341 (490)
+.+. ..+..+|.... ...||+|||||.+...
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK---------------------- 884 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK---------------------- 884 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc----------------------
Confidence 4221 22344444332 2469999999998531
Q ss_pred ccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCC---CCCCCccccCCCceee-EEEeCCCCHHHHHHHHHHhhCCCC
Q 011254 342 NLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNH---KDRLDPAFLRPGRMDV-HIHMSYCTSCGFKMLASSYLGITE 417 (490)
Q Consensus 342 ~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~---~~~LD~aLlRpGR~d~-~I~~~~p~~~~r~~L~~~~l~~~~ 417 (490)
.+..|-.|++... . .+..++||+++|. ++.|+|.+.. ||.. .|.|+.++.+++..|++..+....
T Consensus 885 -----~QDVLYnLFR~~~---~-s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~ 953 (1164)
T PTZ00112 885 -----TQKVLFTLFDWPT---K-INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCK 953 (1164)
T ss_pred -----HHHHHHHHHHHhh---c-cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCC
Confidence 1223333444322 1 2345888899986 5677888877 6654 488999999999999998876432
Q ss_pred CCchHHHHHhhhccCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 011254 418 HPLFLEVEGLIEKAKVTPADVAEQLMRNEVPEIALRELIQFLEI 461 (490)
Q Consensus 418 ~~l~~~i~~l~~~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~ 461 (490)
..+.+++..++.+ -++ ..++|++.||+-|..+++.
T Consensus 954 gVLdDdAIELIAr------kVA---q~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 954 EIIDHTAIQLCAR------KVA---NVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred CCCCHHHHHHHHH------hhh---hcCCHHHHHHHHHHHHHhh
Confidence 2333444333321 011 1358999999999999875
No 110
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.48 E-value=2.9e-12 Score=121.41 Aligned_cols=208 Identities=18% Similarity=0.224 Sum_probs=155.1
Q ss_pred cceecccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEE
Q 011254 206 VWQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVY 282 (490)
Q Consensus 206 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~ 282 (490)
...+++-.+|..+.+|+|.+.+|+.+.+....|+... +-..+||+|.-|||||+|++|+-+++ +..++
T Consensus 47 ~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~---------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLV 117 (287)
T COG2607 47 YLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGL---------PANNVLLWGARGTGKSSLVKALLNEYADEGLRLV 117 (287)
T ss_pred cccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCC---------cccceEEecCCCCChHHHHHHHHHHHHhcCCeEE
Confidence 4556777788999999999999999999998887632 23579999999999999999999987 67788
Q ss_pred EEeccccCChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccc
Q 011254 283 DLELTNLRGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLW 362 (490)
Q Consensus 283 ~l~~s~~~~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~ 362 (490)
.++-.++.+-..|..++...+.+-|||+||+- + .........|-..+||--
T Consensus 118 EV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLS--F---------------------------e~gd~~yK~LKs~LeG~v 168 (287)
T COG2607 118 EVDKEDLATLPDLVELLRARPEKFILFCDDLS--F---------------------------EEGDDAYKALKSALEGGV 168 (287)
T ss_pred EEcHHHHhhHHHHHHHHhcCCceEEEEecCCC--C---------------------------CCCchHHHHHHHHhcCCc
Confidence 88888888888888888888999999999973 1 222344566778889877
Q ss_pred cCCCCcEEEEEecCCCCCCCcccc--------------------CCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchH
Q 011254 363 SSCGDERIIIFTTNHKDRLDPAFL--------------------RPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFL 422 (490)
Q Consensus 363 s~~~~~~iiI~TTN~~~~LD~aLl--------------------RpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~ 422 (490)
...+.+|+|.+|+|+-..|+.... =.-||...+-|..|+.++..+|+.+|....+....+
T Consensus 169 e~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~ 248 (287)
T COG2607 169 EGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISD 248 (287)
T ss_pred ccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 777889999999998665542221 123999999999999999999999998655444422
Q ss_pred -HHHHhhhccCCCHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011254 423 -EVEGLIEKAKVTPADVAEQLMRNEVPEIALRELIQFLE 460 (490)
Q Consensus 423 -~i~~l~~~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~ 460 (490)
++.. ..++....+++-...+...++..+.
T Consensus 249 e~l~~---------eAl~WAt~rg~RSGR~A~QF~~~~~ 278 (287)
T COG2607 249 EELHA---------EALQWATTRGGRSGRVAWQFIRDLA 278 (287)
T ss_pred HHHHH---------HHHHHHHhcCCCccHhHHHHHHHHH
Confidence 2211 2244555555444444444554443
No 111
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.48 E-value=6.1e-13 Score=138.56 Aligned_cols=220 Identities=22% Similarity=0.246 Sum_probs=130.8
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHH----hCCC-CCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCC---
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRN----VGKA-WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRG--- 291 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~----~g~~-~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~--- 291 (490)
-++|+++.++.+...+....++-..... -+.+ .+..+||+||||||||++|+++|..++.++..++++.+..
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 3589999999887776433322110000 0111 1357999999999999999999999999999888776521
Q ss_pred -----hHHHHHHHHhc------cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcc
Q 011254 292 -----NMELRNLLIAT------ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG 360 (490)
Q Consensus 292 -----~~~l~~l~~~~------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg 360 (490)
...+..++... ..++||||||||.+....+ +..... ........+.||..|||
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~--~~s~~~--------------dvsg~~vq~~LL~iLeG 221 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSE--NPSITR--------------DVSGEGVQQALLKIIEG 221 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhc--cccccc--------------cccchhHHHHHHHHhhc
Confidence 22344444322 3578999999998864111 000000 11112466778888888
Q ss_pred cccC----CC-----CcEEEEEecCCCC--------------------------------------------------CC
Q 011254 361 LWSS----CG-----DERIIIFTTNHKD--------------------------------------------------RL 381 (490)
Q Consensus 361 l~s~----~~-----~~~iiI~TTN~~~--------------------------------------------------~L 381 (490)
.... .| .+.++|+|+|-.. .+
T Consensus 222 ~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~ 301 (413)
T TIGR00382 222 TVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGL 301 (413)
T ss_pred cceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhh
Confidence 6421 11 3468889988610 02
Q ss_pred CccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhh----ccCCCHHHHHHHHHcCCCHHHHHHHHHH
Q 011254 382 DPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIE----KAKVTPADVAEQLMRNEVPEIALRELIQ 457 (490)
Q Consensus 382 D~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~----~~~~tpa~i~~~l~~~~~~~~al~~l~~ 457 (490)
.|+|+ ||+|..+.|...+.+.+.+|+..-++ .+..++..++. +..++++-+..+.-+..++....+.|..
T Consensus 302 ~PEfl--gRld~Iv~f~pL~~~~L~~Il~~~~n----~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~ 375 (413)
T TIGR00382 302 IPEFI--GRLPVIATLEKLDEEALIAILTKPKN----ALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRS 375 (413)
T ss_pred HHHHh--CCCCeEeecCCCCHHHHHHHHHHHHH----HHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHH
Confidence 24444 59999999999999998888774331 12334444332 1246776665555444444444444444
Q ss_pred HHHH
Q 011254 458 FLEI 461 (490)
Q Consensus 458 ~l~~ 461 (490)
.+++
T Consensus 376 iie~ 379 (413)
T TIGR00382 376 IVEG 379 (413)
T ss_pred HHHH
Confidence 4433
No 112
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.8e-13 Score=143.57 Aligned_cols=170 Identities=16% Similarity=0.214 Sum_probs=125.4
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc------CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhH
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL------RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRF 323 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~------~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~ 323 (490)
..-.+||+|+||||||++++++|.++|.+++.++|.++ .++..+...|..+. .|+|||+-++|.+.- ++.
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~i--d~d 507 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGI--DQD 507 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeee--cCC
Confidence 34458999999999999999999999999999999887 34567888888876 799999999998853 211
Q ss_pred hhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHH
Q 011254 324 AKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSC 403 (490)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~ 403 (490)
+.. ...-...+..++. +|..... ...+|||+||+..+.+++.+.+ -|-..|.++.|+++
T Consensus 508 gge-----------------d~rl~~~i~~~ls-~e~~~~~-~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~ 566 (953)
T KOG0736|consen 508 GGE-----------------DARLLKVIRHLLS-NEDFKFS-CPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEE 566 (953)
T ss_pred Cch-----------------hHHHHHHHHHHHh-cccccCC-CCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHH
Confidence 100 1111223333443 3333322 2469999999999999999998 88889999999999
Q ss_pred HHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHHc
Q 011254 404 GFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLMR 444 (490)
Q Consensus 404 ~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~ 444 (490)
+|.++++.|+......-......++.++ +|+.+++..++..
T Consensus 567 qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~ 608 (953)
T KOG0736|consen 567 QRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAH 608 (953)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcC
Confidence 9999999999754332233345556554 5899988666543
No 113
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.1e-12 Score=143.86 Aligned_cols=158 Identities=16% Similarity=0.315 Sum_probs=120.1
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc--------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-------------- 278 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-------------- 278 (490)
..|.+|++|+|++.+++.|...+. ....+..||||||+|+|||++|+++|+.+.
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~------------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIA------------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 568999999999999988877665 123567899999999999999999999875
Q ss_pred -----------CcEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhccccccccccccc
Q 011254 279 -----------FDVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVM 341 (490)
Q Consensus 279 -----------~~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ 341 (490)
.+++.++..+..+..+++.++..+. ..-|++|||+|.+.
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------------------ 134 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------------------ 134 (614)
T ss_pred hHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------------------
Confidence 4556666654444567887776543 34699999999772
Q ss_pred ccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCC
Q 011254 342 NLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHP 419 (490)
Q Consensus 342 ~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~ 419 (490)
....+.||..|+.. ....++|++|+.+..|-++|+. |+ ..++|..++.++....+...+...+..
T Consensus 135 ------~~a~naLLK~LEep----p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 135 ------QAAFNAFLKTLEEP----PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred ------HHHHHHHHHHHhCC----CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 12356788888864 2347788888888999999988 65 559999999999887777666554433
No 114
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.47 E-value=1.2e-12 Score=149.30 Aligned_cols=157 Identities=16% Similarity=0.187 Sum_probs=111.8
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----------cCcEEE
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 283 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~ 283 (490)
.|..++.++|.++..+.+++.+. ...+...+|+||||||||++++++|..+ +++++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 46678999999887666665543 2235678999999999999999999986 778898
Q ss_pred EeccccC--------ChHHHHHHHHhcc---CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHH
Q 011254 284 LELTNLR--------GNMELRNLLIATE---NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLS 352 (490)
Q Consensus 284 l~~s~~~--------~~~~l~~l~~~~~---~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 352 (490)
++++.+. ....++.++.... .++||||||||.+++.... . ......+
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~---------------------~-~~~d~~~ 292 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA---------------------E-GAMDAGN 292 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC---------------------c-chhHHHH
Confidence 8877652 1236777777653 5899999999998642110 0 0011111
Q ss_pred HHHHHhcccccCCCCcEEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 353 GMLNFIDGLWSSCGDERIIIFTTNHKD-----RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 353 ~LL~~idgl~s~~~~~~iiI~TTN~~~-----~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
-|...+ . ..++.+|++|+..+ .+|+||.| ||. .|.++.|+.+++..|++.+..
T Consensus 293 ~Lk~~l----~--~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 293 MLKPAL----A--RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred Hhchhh----h--cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHH
Confidence 122222 1 24588888888764 47999999 996 589999999999998886644
No 115
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.46 E-value=4.5e-13 Score=148.77 Aligned_cols=152 Identities=20% Similarity=0.270 Sum_probs=103.9
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCCh
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGN 292 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~ 292 (490)
..|.+|++++|++.+.... ..+...+.. + ....+|||||||||||++|+++|+.++.+++.++.... +.
T Consensus 22 ~RP~tldd~vGQe~ii~~~-~~L~~~i~~-------~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-~i 90 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGEG-RLLRRAIKA-------D--RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-GV 90 (725)
T ss_pred cCCCcHHHhcCcHHHhhhh-HHHHHHHhc-------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-hh
Confidence 4589999999998876421 112222211 1 12368999999999999999999999999988886532 22
Q ss_pred HHHHHHHHhc-------cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 293 MELRNLLIAT-------ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 293 ~~l~~l~~~~-------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
..++..+..+ ..+.||||||||.+.. .....|+..++.
T Consensus 91 ~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~------------------------------~qQdaLL~~lE~----- 135 (725)
T PRK13341 91 KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK------------------------------AQQDALLPWVEN----- 135 (725)
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH------------------------------HHHHHHHHHhcC-----
Confidence 3344443332 3567999999998732 112345655553
Q ss_pred CCcEEEEEec--CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 366 GDERIIIFTT--NHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 366 ~~~~iiI~TT--N~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
..+++|++| |....+++++++ |. ..++|+.++.+++..++++++.
T Consensus 136 -g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 136 -GTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred -ceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 236666654 334578999998 54 4589999999999999998875
No 116
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.46 E-value=7.6e-13 Score=139.11 Aligned_cols=190 Identities=16% Similarity=0.201 Sum_probs=117.2
Q ss_pred cCCCCCccccc-cChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-----cCcEEEEe
Q 011254 212 LDHPATFDTLA-MDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLE 285 (490)
Q Consensus 212 ~~~~~~f~~l~-g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~ 285 (490)
+.+..+|++.+ |... .. ....+..+...+ |. ...+++||||||||||+|++|+|+++ +..++.++
T Consensus 103 l~~~~tfd~fi~g~~n-~~-a~~~~~~~~~~~------~~-~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSN-RL-AHAAALAVAENP------GK-AYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCCcccccccCCcH-HH-HHHHHHHHHhCc------Cc-cCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 55667899954 5332 21 223333332221 21 23568999999999999999999987 56788888
Q ss_pred ccccCCh-------HHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHh
Q 011254 286 LTNLRGN-------MELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFI 358 (490)
Q Consensus 286 ~s~~~~~-------~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~i 358 (490)
+.++... ..+..+........+|+|||||.+.+. ..+...|+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~----------------------------~~~~~~l~~~~ 225 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGK----------------------------ERTQEEFFHTF 225 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCC----------------------------HHHHHHHHHHH
Confidence 7654210 111122233345679999999987431 01122345555
Q ss_pred cccccCCCCcEEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCCCCCCchHHH-HHhhhccC
Q 011254 359 DGLWSSCGDERIIIFTTNHKDR---LDPAFLRPGRMD--VHIHMSYCTSCGFKMLASSYLGITEHPLFLEV-EGLIEKAK 432 (490)
Q Consensus 359 dgl~s~~~~~~iiI~TTN~~~~---LD~aLlRpGR~d--~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i-~~l~~~~~ 432 (490)
+.+.... ..+||.+++.|.. +++.|.. ||. ..++++.|+.++|..|++..+...+..+.+++ +.++....
T Consensus 226 n~~~~~~--~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~ 301 (405)
T TIGR00362 226 NALHENG--KQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIR 301 (405)
T ss_pred HHHHHCC--CCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Confidence 5444331 2444444445543 5688887 886 57999999999999999999877666665554 44455555
Q ss_pred CCHHHHHHHH
Q 011254 433 VTPADVAEQL 442 (490)
Q Consensus 433 ~tpa~i~~~l 442 (490)
-+..++...|
T Consensus 302 ~~~r~l~~~l 311 (405)
T TIGR00362 302 SNVRELEGAL 311 (405)
T ss_pred CCHHHHHHHH
Confidence 5566655544
No 117
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.46 E-value=1.6e-12 Score=125.86 Aligned_cols=164 Identities=14% Similarity=0.198 Sum_probs=101.3
Q ss_pred cccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 210 VNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 210 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
++...|.+||++.+... +.+...+..+.. +....++++|+||||||||+|++++++++ +.+++.+++
T Consensus 9 ~~~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 9 LGPPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 34566788999873321 223333333222 23345789999999999999999999976 667777777
Q ss_pred cccCChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCC
Q 011254 287 TNLRGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCG 366 (490)
Q Consensus 287 s~~~~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~ 366 (490)
..... .+.......+|+|||+|.+-. ... ..|+..++.....
T Consensus 79 ~~~~~------~~~~~~~~~~liiDdi~~l~~---------------------------~~~---~~L~~~~~~~~~~-- 120 (227)
T PRK08903 79 ASPLL------AFDFDPEAELYAVDDVERLDD---------------------------AQQ---IALFNLFNRVRAH-- 120 (227)
T ss_pred HHhHH------HHhhcccCCEEEEeChhhcCc---------------------------hHH---HHHHHHHHHHHHc--
Confidence 65421 123344577999999997621 112 2344444443322
Q ss_pred CcEEEEEecCCCC---CCCccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCCCCCCchHH
Q 011254 367 DERIIIFTTNHKD---RLDPAFLRPGRM--DVHIHMSYCTSCGFKMLASSYLGITEHPLFLE 423 (490)
Q Consensus 367 ~~~iiI~TTN~~~---~LD~aLlRpGR~--d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~ 423 (490)
...++|+|++.+. .+.+.|.. |+ ...|+++.|+.+....++..+....+..+.++
T Consensus 121 ~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~ 180 (227)
T PRK08903 121 GQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADE 180 (227)
T ss_pred CCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 2244666665432 34566665 66 57899999999888888876554433444333
No 118
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.46 E-value=5.8e-13 Score=141.82 Aligned_cols=192 Identities=16% Similarity=0.218 Sum_probs=118.7
Q ss_pred ccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-----cCcEEEEe
Q 011254 211 NLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLE 285 (490)
Q Consensus 211 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~ 285 (490)
.+.+..+|++.+..+.-+. ....+..+...+ |.. .++++||||||||||+|++|+|+++ +..++.++
T Consensus 114 ~l~~~~tfd~fv~g~~n~~-a~~~~~~~~~~~------~~~-~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNRL-AHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCCCcccccccCCCcHH-HHHHHHHHHhCc------Ccc-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4566779999654333322 223333332221 222 2569999999999999999999998 56688888
Q ss_pred ccccCC-------hHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHh
Q 011254 286 LTNLRG-------NMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFI 358 (490)
Q Consensus 286 ~s~~~~-------~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~i 358 (490)
+.++.. ......+.....+..+|+|||||.+.+. ..+...|+..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~----------------------------~~~~~~l~~~~ 237 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGK----------------------------ERTQEEFFHTF 237 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCC----------------------------HHHHHHHHHHH
Confidence 766421 0112223334446789999999987431 11223455555
Q ss_pred cccccCCCCcEEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHH-hhhccC
Q 011254 359 DGLWSSCGDERIIIFTTNHKDR---LDPAFLRPGRMD--VHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEG-LIEKAK 432 (490)
Q Consensus 359 dgl~s~~~~~~iiI~TTN~~~~---LD~aLlRpGR~d--~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~-l~~~~~ 432 (490)
+.+.... ..+||.++..|.. ++++|.. ||. ..+++..|+.++|..+++..+...+..+.+++.. ++....
T Consensus 238 n~l~~~~--~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~ 313 (450)
T PRK00149 238 NALHEAG--KQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNIT 313 (450)
T ss_pred HHHHHCC--CcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcC
Confidence 5554432 2445544445544 6788887 885 6899999999999999999887655556555443 344444
Q ss_pred CCHHHHHHHH
Q 011254 433 VTPADVAEQL 442 (490)
Q Consensus 433 ~tpa~i~~~l 442 (490)
-+..++...|
T Consensus 314 ~~~R~l~~~l 323 (450)
T PRK00149 314 SNVRELEGAL 323 (450)
T ss_pred CCHHHHHHHH
Confidence 4545544443
No 119
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.44 E-value=6.8e-12 Score=131.18 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=106.1
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-----cCcEEEEeccccC
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELTNLR 290 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~s~~~ 290 (490)
...+.+++-++..++|...+...+.. ..+..+++|||||||||++++.+++.+ ++.++.+++....
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 34466778777777777666543321 224568999999999999999999987 5778888875432
Q ss_pred Ch-----------------------HHH-HHHH---HhccCCeEEEEeccchhhhhhhhHhhhhhccccccccccccccc
Q 011254 291 GN-----------------------MEL-RNLL---IATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNL 343 (490)
Q Consensus 291 ~~-----------------------~~l-~~l~---~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~ 343 (490)
+. .++ ..+. .....+.||+|||+|.+..
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~------------------------- 152 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE------------------------- 152 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc-------------------------
Confidence 21 111 1111 1123458999999998851
Q ss_pred CCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCC---CCCccccCCCce-eeEEEeCCCCHHHHHHHHHHhhC
Q 011254 344 NQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKD---RLDPAFLRPGRM-DVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 344 ~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~---~LD~aLlRpGR~-d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
......+..|+..++... +..+.+|+++|..+ .+++.+.. |+ ...|+|+.++.++...+++..+.
T Consensus 153 -~~~~~~l~~l~~~~~~~~---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 153 -KEGNDVLYSLLRAHEEYP---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred -cCCchHHHHHHHhhhccC---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence 011234566666655442 22577888888764 56777665 55 35789999999999999987764
No 120
>PRK08727 hypothetical protein; Validated
Probab=99.44 E-value=1.4e-12 Score=126.92 Aligned_cols=158 Identities=20% Similarity=0.250 Sum_probs=102.5
Q ss_pred cccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 210 VNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 210 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
++.....+|++.++.+.-. ...+..... | .+...++||||+|||||+|++|+++++ +..+..++.
T Consensus 10 ~~~~~~~~f~~f~~~~~n~---~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~ 77 (233)
T PRK08727 10 LRYPSDQRFDSYIAAPDGL---LAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL 77 (233)
T ss_pred CCCCCcCChhhccCCcHHH---HHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH
Confidence 3455667899998666531 121111111 1 233459999999999999999998775 566666666
Q ss_pred cccCChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCC
Q 011254 287 TNLRGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCG 366 (490)
Q Consensus 287 s~~~~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~ 366 (490)
.+.. ..+...+....+..+|+|||+|.+.. .......+..++|.+ ...
T Consensus 78 ~~~~--~~~~~~~~~l~~~dlLiIDDi~~l~~-------------------------~~~~~~~lf~l~n~~---~~~-- 125 (233)
T PRK08727 78 QAAA--GRLRDALEALEGRSLVALDGLESIAG-------------------------QREDEVALFDFHNRA---RAA-- 125 (233)
T ss_pred HHhh--hhHHHHHHHHhcCCEEEEeCcccccC-------------------------ChHHHHHHHHHHHHH---HHc--
Confidence 5532 34556666677788999999997743 111122333444443 222
Q ss_pred CcEEEEEecC-CCCCC---CccccCCCce--eeEEEeCCCCHHHHHHHHHHhhC
Q 011254 367 DERIIIFTTN-HKDRL---DPAFLRPGRM--DVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 367 ~~~iiI~TTN-~~~~L---D~aLlRpGR~--d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
+.-||+|+| .|..+ +|+|.+ || ..+++++.|+.+++..+++....
T Consensus 126 -~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 126 -GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred -CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 133555555 56655 789988 86 57899999999999999997553
No 121
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.43 E-value=2.6e-12 Score=136.24 Aligned_cols=160 Identities=16% Similarity=0.296 Sum_probs=125.8
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCc-------------
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD------------- 280 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~------------- 280 (490)
.|.+|++++|++.+.+.|...+.. .....+|||.||-||||||+|+.+|..+++.
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 478999999999999999887762 2234689999999999999999999988643
Q ss_pred -----------EEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhccccccccccccccc
Q 011254 281 -----------VYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNL 343 (490)
Q Consensus 281 -----------~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~ 343 (490)
++.+|..+-.+-+++|++..+.. +.-|.+|||++.+.
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-------------------------- 132 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-------------------------- 132 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------------------
Confidence 22333333345677888887764 45699999999873
Q ss_pred CCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchH
Q 011254 344 NQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFL 422 (490)
Q Consensus 344 ~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~ 422 (490)
...++.||..++.. +..+++|++|..+.++++.++. |+ .+..|...+.++....+...+..++....+
T Consensus 133 ----~~afNALLKTLEEP----P~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~ 200 (515)
T COG2812 133 ----KQAFNALLKTLEEP----PSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEE 200 (515)
T ss_pred ----HHHHHHHhcccccC----ccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCH
Confidence 45678899988864 4569999999999999999998 76 678899999999988888888866554443
No 122
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.43 E-value=3.8e-12 Score=144.72 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=109.9
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----------cCcEEEEe
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLE 285 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~l~ 285 (490)
..++.++|.++..+.+++.+. ...+.+++|+||||||||++|+++|..+ +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 357888998888888777654 2245689999999999999999999987 47899999
Q ss_pred ccccC--------ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHH
Q 011254 286 LTNLR--------GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGML 355 (490)
Q Consensus 286 ~s~~~--------~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 355 (490)
++.+. .+..++.++..+. .++||||||||.+++.... ......+.+|
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~-----------------------~g~~~~a~lL 299 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA-----------------------EGAIDAANIL 299 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC-----------------------CCcccHHHHh
Confidence 87652 1347888887654 5789999999999752110 0011222333
Q ss_pred -HHhcccccCCCCcEEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011254 356 -NFIDGLWSSCGDERIIIFTTNHKD-----RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSY 412 (490)
Q Consensus 356 -~~idgl~s~~~~~~iiI~TTN~~~-----~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~ 412 (490)
..+. .+++.+|++|+..+ ..||+|.| ||. .|.++.|+.++...|++..
T Consensus 300 kp~l~------rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 300 KPALA------RGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHh------CCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHH
Confidence 2222 24578888888764 47999999 996 5899999999987777643
No 123
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.42 E-value=5.6e-12 Score=127.67 Aligned_cols=163 Identities=16% Similarity=0.209 Sum_probs=109.6
Q ss_pred cceecccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc-----Cc
Q 011254 206 VWQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FD 280 (490)
Q Consensus 206 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-----~~ 280 (490)
.|.. -..|.+|++++|.+++++.+...+. . +. ...+|||||||||||++++++++++. ..
T Consensus 6 ~w~~--kyrP~~~~~~~g~~~~~~~l~~~i~----~-------~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~ 70 (319)
T PRK00440 6 IWVE--KYRPRTLDEIVGQEEIVERLKSYVK----E-------KN--MPHLLFAGPPGTGKTTAALALARELYGEDWREN 70 (319)
T ss_pred ccch--hhCCCcHHHhcCcHHHHHHHHHHHh----C-------CC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence 4643 5678999999999988887766553 1 11 12489999999999999999999873 33
Q ss_pred EEEEeccccCChHHHHHHHH----hc----cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHH
Q 011254 281 VYDLELTNLRGNMELRNLLI----AT----ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLS 352 (490)
Q Consensus 281 ~~~l~~s~~~~~~~l~~l~~----~~----~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 352 (490)
++.++.++......++..+. .. ..+.+|+|||+|.+.. ....
T Consensus 71 ~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~------------------------------~~~~ 120 (319)
T PRK00440 71 FLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS------------------------------DAQQ 120 (319)
T ss_pred eEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH------------------------------HHHH
Confidence 45554443322222222221 11 1356999999997732 1123
Q ss_pred HHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc
Q 011254 353 GMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPL 420 (490)
Q Consensus 353 ~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l 420 (490)
.|+..++.... ...+|+++|.+..+.+++.+ |+. .++|+.++.++...++..++...+..+
T Consensus 121 ~L~~~le~~~~----~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i 181 (319)
T PRK00440 121 ALRRTMEMYSQ----NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEI 181 (319)
T ss_pred HHHHHHhcCCC----CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 46666665322 35677788888888888887 664 589999999999888888876554433
No 124
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.42 E-value=2.7e-12 Score=125.05 Aligned_cols=159 Identities=16% Similarity=0.212 Sum_probs=96.6
Q ss_pred ccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc---CcEEEEecc
Q 011254 211 NLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELT 287 (490)
Q Consensus 211 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~~s 287 (490)
.+.+..+||+.+-.. -......+..+... +..+.++||||||||||+|++++|+++. ..+..+++.
T Consensus 14 ~~~~~~~fd~f~~~~--n~~a~~~l~~~~~~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 14 YLPDDETFASFYPGD--NDSLLAALQNALRQ---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCCcCCccccccCc--cHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 355667899987331 12234444433221 1235799999999999999999998764 445555554
Q ss_pred ccCChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCC
Q 011254 288 NLRGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGD 367 (490)
Q Consensus 288 ~~~~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~ 367 (490)
.... ...+++....+-.+|+||||+.+.. .......+-.++|. .... +.
T Consensus 83 ~~~~--~~~~~~~~~~~~dlliiDdi~~~~~-------------------------~~~~~~~lf~l~n~---~~e~-g~ 131 (235)
T PRK08084 83 KRAW--FVPEVLEGMEQLSLVCIDNIECIAG-------------------------DELWEMAIFDLYNR---ILES-GR 131 (235)
T ss_pred HHhh--hhHHHHHHhhhCCEEEEeChhhhcC-------------------------CHHHHHHHHHHHHH---HHHc-CC
Confidence 4321 1223333333446899999997732 11112233334433 2221 22
Q ss_pred cEEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHhh
Q 011254 368 ERIIIFTTNHKDR---LDPAFLRPGRMD--VHIHMSYCTSCGFKMLASSYL 413 (490)
Q Consensus 368 ~~iiI~TTN~~~~---LD~aLlRpGR~d--~~I~~~~p~~~~r~~L~~~~l 413 (490)
..+|+.+++.|.. +.|+|.. |+. ..+++..|+.+++.++++...
T Consensus 132 ~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 132 TRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred CeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHH
Confidence 2455555556555 5789988 775 789999999999999888644
No 125
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=2.5e-11 Score=125.35 Aligned_cols=152 Identities=17% Similarity=0.232 Sum_probs=112.6
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
.+|++|++|+|+++.++.+.+.+.. ...+.++||+||+|+||+++|.++|+.+-.
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 6899999999999999988876652 245678999999999999999999998732
Q ss_pred ---------------------cEEEEecc--c-------cCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhH
Q 011254 280 ---------------------DVYDLELT--N-------LRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRF 323 (490)
Q Consensus 280 ---------------------~~~~l~~s--~-------~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~ 323 (490)
+++.+... + ...-++++++..... .+-|++|||+|.+-
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------ 154 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------ 154 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC------
Confidence 22223210 1 012345666555432 46799999998762
Q ss_pred hhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHH
Q 011254 324 AKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSC 403 (490)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~ 403 (490)
....+.||..++... ...++|++|+.++.+.|.++. |+ .+|.|+.++.+
T Consensus 155 ------------------------~~aanaLLK~LEepp----~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~ 203 (365)
T PRK07471 155 ------------------------ANAANALLKVLEEPP----ARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPE 203 (365)
T ss_pred ------------------------HHHHHHHHHHHhcCC----CCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHH
Confidence 345667888887642 347888899999999998877 76 68999999999
Q ss_pred HHHHHHHHhh
Q 011254 404 GFKMLASSYL 413 (490)
Q Consensus 404 ~r~~L~~~~l 413 (490)
+...++....
T Consensus 204 ~i~~~L~~~~ 213 (365)
T PRK07471 204 DVIDALAAAG 213 (365)
T ss_pred HHHHHHHHhc
Confidence 9888887654
No 126
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.41 E-value=5.4e-12 Score=141.85 Aligned_cols=194 Identities=16% Similarity=0.275 Sum_probs=124.4
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhCCC---CCc-ceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHH-
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKA---WKR-GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNME- 294 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~---~~r-g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~- 294 (490)
.|+|+++.++.|.+.+... +.|.. -|. .+||+||||||||+||+++|..++.+++.++++++.....
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 4667777777776655421 23332 133 4899999999999999999999999999999887633211
Q ss_pred ------------------HHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHH
Q 011254 295 ------------------LRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLN 356 (490)
Q Consensus 295 ------------------l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 356 (490)
+.+.+. ....+||+|||||.+-+ ...+.||.
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~-~~p~~VvllDEieka~~------------------------------~~~~~Ll~ 575 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVR-KHPHCVLLLDEIEKAHP------------------------------DIYNILLQ 575 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHH-hCCCeEEEEechhhcCH------------------------------HHHHHHHH
Confidence 222222 23468999999997632 24556777
Q ss_pred Hhcccc--cCCC-----CcEEEEEecCCCC-------------------------CCCccccCCCceeeEEEeCCCCHHH
Q 011254 357 FIDGLW--SSCG-----DERIIIFTTNHKD-------------------------RLDPAFLRPGRMDVHIHMSYCTSCG 404 (490)
Q Consensus 357 ~idgl~--s~~~-----~~~iiI~TTN~~~-------------------------~LD~aLlRpGR~d~~I~~~~p~~~~ 404 (490)
.+|.-. ...| .+.+||+|||.-. .+.|.|+. |||..|.|...+.++
T Consensus 576 ~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~ 653 (731)
T TIGR02639 576 VMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEV 653 (731)
T ss_pred hhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHH
Confidence 776321 1111 3578999998631 24566665 999999999999999
Q ss_pred HHHHHHHhhCCCCCCchHHHHHhhh----ccCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 011254 405 FKMLASSYLGITEHPLFLEVEGLIE----KAKVTPADVAEQLMRNEVPEIALRELIQFLEIK 462 (490)
Q Consensus 405 r~~L~~~~l~~~~~~l~~~i~~l~~----~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~~ 462 (490)
..+|++..+.. +...+. ...+++.-+..++-...++....+.|..+++..
T Consensus 654 l~~Iv~~~L~~--------l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~ 707 (731)
T TIGR02639 654 LEKIVQKFVDE--------LSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEE 707 (731)
T ss_pred HHHHHHHHHHH--------HHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHH
Confidence 99999988742 222122 234565544433333445554555555554443
No 127
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.39 E-value=3.2e-12 Score=128.69 Aligned_cols=129 Identities=17% Similarity=0.226 Sum_probs=90.3
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHH------------------HHH-hccCCeEEEEecc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRN------------------LLI-ATENKSILVVEDI 313 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~------------------l~~-~~~~~sIl~iDdi 313 (490)
++.+||.||||||||++++++|..++.+++.++++......++-. .+. ....+.+|++|||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 568999999999999999999999999999998766522211100 111 1236788999999
Q ss_pred chhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcc--cc---c-----CCCCcEEEEEecCCCC----
Q 011254 314 DCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG--LW---S-----SCGDERIIIFTTNHKD---- 379 (490)
Q Consensus 314 D~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg--l~---s-----~~~~~~iiI~TTN~~~---- 379 (490)
|..-+ .+++.|...+|. .. . .+.....+|+|+|..+
T Consensus 144 n~a~p------------------------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~ 193 (327)
T TIGR01650 144 DAGRP------------------------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDT 193 (327)
T ss_pred hccCH------------------------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCC
Confidence 97622 122333333331 10 0 0112467899999865
Q ss_pred --------CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011254 380 --------RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYL 413 (490)
Q Consensus 380 --------~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l 413 (490)
.|++|++. ||-+.+.++||+.+.-.+|+....
T Consensus 194 ~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 194 TGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 35889999 998899999999999998887654
No 128
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=4.7e-11 Score=121.29 Aligned_cols=148 Identities=15% Similarity=0.227 Sum_probs=109.7
Q ss_pred CccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC--------cEEEEecc-
Q 011254 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF--------DVYDLELT- 287 (490)
Q Consensus 217 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~--------~~~~l~~s- 287 (490)
+|++++|++.+++.+...+. ....+..||||||+|+|||++|+++|+.+.. +++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~------------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII------------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH------------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 68999999999988877653 2345678999999999999999999997632 44444331
Q ss_pred -ccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcc
Q 011254 288 -NLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG 360 (490)
Q Consensus 288 -~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg 360 (490)
...+-.+++.+..... +.-|++||++|.+- ....+.||..++.
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------------------------~~a~naLLK~LEe 119 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------------------------EQAQNAFLKTIEE 119 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC------------------------------HHHHHHHHHHhcC
Confidence 1123456777776432 45699999998772 2235678888886
Q ss_pred cccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011254 361 LWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYL 413 (490)
Q Consensus 361 l~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l 413 (490)
. +...++|++|++++.|.|++.. |. .+++|+.|+.++....+...+
T Consensus 120 p----p~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 120 P----PKGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred C----CCCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 4 3457888888889999999988 66 589999999998777666544
No 129
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=2.6e-11 Score=124.59 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=108.3
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCc------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD------------ 280 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~------------ 280 (490)
.||..|+.|+|+++.++.+...+. ....+..+||+||+|+|||++|+++|+.+...
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~------------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR------------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH------------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 689999999999999888876654 12345689999999999999999999988541
Q ss_pred ------------------EEEEecc---------ccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhh
Q 011254 281 ------------------VYDLELT---------NLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAK 327 (490)
Q Consensus 281 ------------------~~~l~~s---------~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~ 327 (490)
++.+... ...+-++++.+..... ..-|++|||+|.+-
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~---------- 154 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN---------- 154 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC----------
Confidence 1111100 0011244444433321 34699999998772
Q ss_pred hcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHH
Q 011254 328 ATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKM 407 (490)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~ 407 (490)
....+.||..++... ...++|+.|+.++.+.|.++. |+ .+++|+.++.++...
T Consensus 155 --------------------~~aanaLLk~LEEpp----~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~ 207 (351)
T PRK09112 155 --------------------RNAANAILKTLEEPP----ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKK 207 (351)
T ss_pred --------------------HHHHHHHHHHHhcCC----CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHH
Confidence 234566888888642 346777778889999999887 87 689999999999988
Q ss_pred HHHHh
Q 011254 408 LASSY 412 (490)
Q Consensus 408 L~~~~ 412 (490)
++...
T Consensus 208 ~L~~~ 212 (351)
T PRK09112 208 ALSHL 212 (351)
T ss_pred HHHHh
Confidence 88863
No 130
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=3.8e-12 Score=134.89 Aligned_cols=191 Identities=16% Similarity=0.251 Sum_probs=114.8
Q ss_pred ccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-----cCcEEEEe
Q 011254 211 NLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLE 285 (490)
Q Consensus 211 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~ 285 (490)
++.+..||++.+..+.-.. ....+..+...+ | +..+++||||||||||+|++|+|+++ +..++.++
T Consensus 97 ~l~~~~tFdnFv~g~~n~~-a~~~~~~~~~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 97 PLNPDYTFENFVVGPGNSF-AYHAALEVAKNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCCCcccccccCCchHH-HHHHHHHHHhCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3556678999874443332 222333332221 2 23469999999999999999999986 45677777
Q ss_pred ccccCC-------hHHHHHHHHhcc-CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHH
Q 011254 286 LTNLRG-------NMELRNLLIATE-NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNF 357 (490)
Q Consensus 286 ~s~~~~-------~~~l~~l~~~~~-~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 357 (490)
+.++.. ...+..+..... ++.+|+|||++.+.+.. .+...|+..
T Consensus 168 ~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~----------------------------~~q~elf~~ 219 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT----------------------------GVQTELFHT 219 (440)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH----------------------------HHHHHHHHH
Confidence 665411 011222222222 57899999999875310 011234444
Q ss_pred hcccccCCCCcEEEEEecCCCCC---CCccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhh-hcc
Q 011254 358 IDGLWSSCGDERIIIFTTNHKDR---LDPAFLRPGRM--DVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLI-EKA 431 (490)
Q Consensus 358 idgl~s~~~~~~iiI~TTN~~~~---LD~aLlRpGR~--d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~-~~~ 431 (490)
++.+.... ..+||.+.+.|.. +++.+.. || ...+.+..|+.+.|..|+++.+...+..+.+++..++ ...
T Consensus 220 ~n~l~~~~--k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~ 295 (440)
T PRK14088 220 FNELHDSG--KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENV 295 (440)
T ss_pred HHHHHHcC--CeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcc
Confidence 44444432 2444444455554 4567777 55 4678999999999999999988766666666654444 443
Q ss_pred CCCHHHHHHHH
Q 011254 432 KVTPADVAEQL 442 (490)
Q Consensus 432 ~~tpa~i~~~l 442 (490)
.-+..++...|
T Consensus 296 ~~~~R~L~g~l 306 (440)
T PRK14088 296 DDNLRRLRGAI 306 (440)
T ss_pred ccCHHHHHHHH
Confidence 44445554444
No 131
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=6.2e-12 Score=135.56 Aligned_cols=181 Identities=28% Similarity=0.392 Sum_probs=136.4
Q ss_pred HHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc------CChHHHHHHHHhcc--CCeEEEE
Q 011254 239 VKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL------RGNMELRNLLIATE--NKSILVV 310 (490)
Q Consensus 239 l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~------~~~~~l~~l~~~~~--~~sIl~i 310 (490)
+..+..+...+..+++|++++||||||||++++++|++ +.....++.... .+..+++.++..+. .|+|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 34667888999999999999999999999999999999 555554554443 23556777777765 5799999
Q ss_pred eccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCc
Q 011254 311 EDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGR 390 (490)
Q Consensus 311 DdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR 390 (490)
|++|.+.+.+.. . .........++++..+|++. .+. ++++..||.+..+|+++.+|||
T Consensus 83 d~~~~~~~~~~~---~----------------~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~ 140 (494)
T COG0464 83 DEIDALAPKRSS---D----------------QGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGR 140 (494)
T ss_pred chhhhcccCccc---c----------------ccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccc
Confidence 999999763332 0 03345678899999999998 455 8888899999999999999999
Q ss_pred eeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhc-cCCCHHHHHHHH
Q 011254 391 MDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEK-AKVTPADVAEQL 442 (490)
Q Consensus 391 ~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l 442 (490)
|+..++++.|+...+.++..................++.. .+++.+++..++
T Consensus 141 ~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~ 193 (494)
T COG0464 141 FDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALA 193 (494)
T ss_pred cceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHH
Confidence 9999999999999997777755533322212234444432 347777776665
No 132
>PRK05642 DNA replication initiation factor; Validated
Probab=99.36 E-value=1.4e-11 Score=119.98 Aligned_cols=161 Identities=18% Similarity=0.239 Sum_probs=100.6
Q ss_pred cccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCC-CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEe
Q 011254 210 VNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAW-KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 285 (490)
Q Consensus 210 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~-~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 285 (490)
+...+..|||+.+... .......+..+.... ..| .+.++||||+|||||+|++|+|+++ +..++.++
T Consensus 10 ~~~~~~~tfdnF~~~~--~~~a~~~~~~~~~~~-------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 10 VRLRDDATFANYYPGA--NAAALGYVERLCEAD-------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CCCCCcccccccCcCC--hHHHHHHHHHHhhcc-------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 4456667999997332 233444444332211 123 3678999999999999999999865 56777787
Q ss_pred ccccCChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 286 LTNLRGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 286 ~s~~~~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
..++... ...++....+-.+|+|||++.+.+ ..... ..|++.++.+...
T Consensus 81 ~~~~~~~--~~~~~~~~~~~d~LiiDDi~~~~~-------------------------~~~~~---~~Lf~l~n~~~~~- 129 (234)
T PRK05642 81 LAELLDR--GPELLDNLEQYELVCLDDLDVIAG-------------------------KADWE---EALFHLFNRLRDS- 129 (234)
T ss_pred HHHHHhh--hHHHHHhhhhCCEEEEechhhhcC-------------------------ChHHH---HHHHHHHHHHHhc-
Confidence 7665321 123333344456999999997632 11112 2344444444332
Q ss_pred CCcEEEEEecCCCCC---CCccccCCCce--eeEEEeCCCCHHHHHHHHHHhh
Q 011254 366 GDERIIIFTTNHKDR---LDPAFLRPGRM--DVHIHMSYCTSCGFKMLASSYL 413 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~---LD~aLlRpGR~--d~~I~~~~p~~~~r~~L~~~~l 413 (490)
+..+||.++..|.. +.|+|.. |+ ...+.+..|+.+.+..+++...
T Consensus 130 -g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 130 -GRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred -CCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 23555555555543 3688888 77 4778899999999999988544
No 133
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.36 E-value=1.9e-11 Score=134.51 Aligned_cols=194 Identities=16% Similarity=0.251 Sum_probs=107.9
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----------cCcEE
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVY 282 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~ 282 (490)
-.|.+|++++|.....+.+...+. .+.+..++|+||||||||++|+++++.. +.+++
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 348899999999888877654432 1335679999999999999999998766 35688
Q ss_pred EEeccccCC-hHHH----------------HHHHHh------------ccCCeEEEEeccchhhhhhhhHhhhhhccccc
Q 011254 283 DLELTNLRG-NMEL----------------RNLLIA------------TENKSILVVEDIDCSIELQDRFAKAKATNAMD 333 (490)
Q Consensus 283 ~l~~s~~~~-~~~l----------------~~l~~~------------~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~ 333 (490)
.+++..+.. ...+ ++.+.. .....+|||||++.+-... .........
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~----Q~~Ll~~Le 290 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLL----QNKLLKVLE 290 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHH----HHHHHHHHh
Confidence 888766521 1111 011111 1135799999999873210 000000000
Q ss_pred ccccccccccCCchhhHHHHHHH-HhcccccCCCCcEEEEE-ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011254 334 LNVIQPVMNLNQVPQVTLSGMLN-FIDGLWSSCGDERIIIF-TTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASS 411 (490)
Q Consensus 334 ~~~~~~~~~~~~~~~~~ls~LL~-~idgl~s~~~~~~iiI~-TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~ 411 (490)
........+............+. .++. .....+++|+ ||+.++.++++|++ ||. .++|+.++.++...|+++
T Consensus 291 ~~~v~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~ 364 (615)
T TIGR02903 291 DKRVEFSSSYYDPDDPNVPKYIKKLFEE---GAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLN 364 (615)
T ss_pred hCeEEeecceeccCCcccchhhhhhccc---CccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHH
Confidence 00000000000000000001111 1111 1112345554 66778899999988 886 578999999999999998
Q ss_pred hhCCCCCCchHHHHHhhh
Q 011254 412 YLGITEHPLFLEVEGLIE 429 (490)
Q Consensus 412 ~l~~~~~~l~~~i~~l~~ 429 (490)
++......+.+++..++.
T Consensus 365 ~a~~~~v~ls~eal~~L~ 382 (615)
T TIGR02903 365 AAEKINVHLAAGVEELIA 382 (615)
T ss_pred HHHHcCCCCCHHHHHHHH
Confidence 876433333334433333
No 134
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.36 E-value=1.3e-11 Score=130.78 Aligned_cols=178 Identities=17% Similarity=0.226 Sum_probs=107.1
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccc
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTN 288 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~ 288 (490)
+.+..|||+.+-.+.-+. ....+..+...+ ...+.....+++||||||+|||+|++|+|+++ +..++.++...
T Consensus 104 l~~~~tFdnFv~g~~N~~-a~~~a~~~a~~~---~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~ 179 (445)
T PRK12422 104 LDPLMTFANFLVTPENDL-PHRILQEFTKVS---EQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSEL 179 (445)
T ss_pred CCccccccceeeCCcHHH-HHHHHHHHHhcc---ccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHH
Confidence 556678999874333221 112222221111 00011122579999999999999999999987 67788887654
Q ss_pred cCC-------hHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccc
Q 011254 289 LRG-------NMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGL 361 (490)
Q Consensus 289 ~~~-------~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl 361 (490)
+.. ...+..+-....+..+|+||||+.+.+ ...... .|+..++.+
T Consensus 180 f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~-------------------------k~~~qe---elf~l~N~l 231 (445)
T PRK12422 180 FTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG-------------------------KGATQE---EFFHTFNSL 231 (445)
T ss_pred HHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcC-------------------------ChhhHH---HHHHHHHHH
Confidence 411 011111112234678999999997742 011122 233333333
Q ss_pred ccCCCCcEEEEEecCC-C---CCCCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHH
Q 011254 362 WSSCGDERIIIFTTNH-K---DRLDPAFLRPGRMD--VHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEG 426 (490)
Q Consensus 362 ~s~~~~~~iiI~TTN~-~---~~LD~aLlRpGR~d--~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~ 426 (490)
... + ..+|+|+|. | ..++++|.+ ||. ..+.+..|+.+.+..+++..+...+..+.+++..
T Consensus 232 ~~~-~--k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~ 297 (445)
T PRK12422 232 HTE-G--KLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALD 297 (445)
T ss_pred HHC-C--CcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 322 1 345566654 4 356789988 885 8899999999999999998887665556555544
No 135
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.35 E-value=1.1e-11 Score=133.78 Aligned_cols=191 Identities=15% Similarity=0.166 Sum_probs=118.6
Q ss_pred ccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-----cCcEEEEe
Q 011254 211 NLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLE 285 (490)
Q Consensus 211 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~ 285 (490)
.+....+|++++..+.-.. ....+..... ..+. +...++|||++|||||+|++|||+++ ++.++.++
T Consensus 280 ~L~~~~TFDnFvvG~sN~~-A~aaa~avae------~~~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 280 RLNPKYTFDTFVIGASNRF-AHAAAVAVAE------APAK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCCCCHhhhcCCCccHH-HHHHHHHHHh------Cccc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 4556678999975443321 1122222221 1222 23458999999999999999999987 56788888
Q ss_pred ccccCC-------hHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHh
Q 011254 286 LTNLRG-------NMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFI 358 (490)
Q Consensus 286 ~s~~~~-------~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~i 358 (490)
+.++.. ...+..+.....+..+|+||||+.+.+.. .+...|++.+
T Consensus 352 aeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke----------------------------~tqeeLF~l~ 403 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKE----------------------------STQEEFFHTF 403 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCH----------------------------HHHHHHHHHH
Confidence 766421 11112222333467899999999874311 1122344455
Q ss_pred cccccCCCCcEEEEEecCCC----CCCCccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhh-hcc
Q 011254 359 DGLWSSCGDERIIIFTTNHK----DRLDPAFLRPGRM--DVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLI-EKA 431 (490)
Q Consensus 359 dgl~s~~~~~~iiI~TTN~~----~~LD~aLlRpGR~--d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~-~~~ 431 (490)
+.+.... .-||+|+|.+ ..+++.|.. || ...+++..|+.+.|..|++..+......+.+++.+++ ...
T Consensus 404 N~l~e~g---k~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~ 478 (617)
T PRK14086 404 NTLHNAN---KQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRI 478 (617)
T ss_pred HHHHhcC---CCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc
Confidence 5444321 2344577654 357888988 76 6677999999999999999888777677766655444 444
Q ss_pred CCCHHHHHHHH
Q 011254 432 KVTPADVAEQL 442 (490)
Q Consensus 432 ~~tpa~i~~~l 442 (490)
.-+..++...|
T Consensus 479 ~rnvR~LegaL 489 (617)
T PRK14086 479 SRNIRELEGAL 489 (617)
T ss_pred cCCHHHHHHHH
Confidence 44555555544
No 136
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.35 E-value=1.3e-11 Score=108.56 Aligned_cols=116 Identities=28% Similarity=0.404 Sum_probs=80.0
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCChHHHHH-----------HHHhccCCeEEEEeccchhh
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGNMELRN-----------LLIATENKSILVVEDIDCSI 317 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l~~-----------l~~~~~~~sIl~iDdiD~l~ 317 (490)
..+.++++||||||||++++++++.+ +.+++.+++........... .......+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 35679999999999999999999999 89999999877643322221 12223468999999999762
Q ss_pred hhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC--CCCcEEEEEecCCCC--CCCccccCCCceee
Q 011254 318 ELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS--CGDERIIIFTTNHKD--RLDPAFLRPGRMDV 393 (490)
Q Consensus 318 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~--~~~~~iiI~TTN~~~--~LD~aLlRpGR~d~ 393 (490)
. .....++..+...... ...+..+|++||... .+++.+.. |++.
T Consensus 98 ~------------------------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~ 145 (151)
T cd00009 98 R------------------------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDI 145 (151)
T ss_pred H------------------------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhcc
Confidence 1 1112334444333211 123478889999877 77788877 9998
Q ss_pred EEEeCC
Q 011254 394 HIHMSY 399 (490)
Q Consensus 394 ~I~~~~ 399 (490)
+|++++
T Consensus 146 ~i~~~~ 151 (151)
T cd00009 146 RIVIPL 151 (151)
T ss_pred EeecCC
Confidence 888863
No 137
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.34 E-value=1.4e-11 Score=122.69 Aligned_cols=190 Identities=22% Similarity=0.285 Sum_probs=113.4
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCc---EEEEeccccC
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLELTNLR 290 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~---~~~l~~s~~~ 290 (490)
.|.++++.+|++.+..+ ...+...+.. .--.+++|+||||||||+||+.||+...-+ |+.++.+. .
T Consensus 133 RPktL~dyvGQ~hlv~q-~gllrs~ieq---------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-a 201 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQ-DGLLRSLIEQ---------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-A 201 (554)
T ss_pred CcchHHHhcchhhhcCc-chHHHHHHHc---------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-c
Confidence 57888888888766433 1111111111 112368999999999999999999988655 44444433 2
Q ss_pred ChHHHHHHHHhcc-------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc
Q 011254 291 GNMELRNLLIATE-------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS 363 (490)
Q Consensus 291 ~~~~l~~l~~~~~-------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s 363 (490)
+..++|.+|..+. ++.|||||||+.+-. .++ ..||-.++
T Consensus 202 ~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk---------------------------sQQ---D~fLP~VE---- 247 (554)
T KOG2028|consen 202 KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK---------------------------SQQ---DTFLPHVE---- 247 (554)
T ss_pred chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh---------------------------hhh---hcccceec----
Confidence 4467888887764 689999999997721 111 11332222
Q ss_pred CCCCcEEEEE-ecCCC-CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhh---CCCC---CCchHHHHHhhhccCCCH
Q 011254 364 SCGDERIIIF-TTNHK-DRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYL---GITE---HPLFLEVEGLIEKAKVTP 435 (490)
Q Consensus 364 ~~~~~~iiI~-TTN~~-~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l---~~~~---~~l~~~i~~l~~~~~~tp 435 (490)
+ +.+++|+ ||..| -.|..||+. |+ ..+.+.....+....|+.+-. +... .++....- +-.
T Consensus 248 -~-G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~-------~ve 315 (554)
T KOG2028|consen 248 -N-GDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSM-------FVE 315 (554)
T ss_pred -c-CceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcch-------hhh
Confidence 1 2477776 44444 589999998 54 346777777888877777533 2211 11111000 111
Q ss_pred HHHHHHHH--cCCCHHHHHHHHHHHHH
Q 011254 436 ADVAEQLM--RNEVPEIALRELIQFLE 460 (490)
Q Consensus 436 a~i~~~l~--~~~~~~~al~~l~~~l~ 460 (490)
..|.+.|. ..+|+..||..|.-.+.
T Consensus 316 ~siidyla~lsdGDaR~aLN~Lems~~ 342 (554)
T KOG2028|consen 316 DSIIDYLAYLSDGDARAALNALEMSLS 342 (554)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 22344443 34688888887766643
No 138
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.32 E-value=1.1e-11 Score=126.29 Aligned_cols=156 Identities=19% Similarity=0.270 Sum_probs=102.9
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-------cCcEEE--E
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-------NFDVYD--L 284 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-------~~~~~~--l 284 (490)
.|.+|+.++|+++.++.+.-.+.. +-..++||+||||||||++++++|+.+ +.++-. +
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 467899999999998877543221 112479999999999999999999998 331110 0
Q ss_pred e----c--------------------c----ccCChHHHHHHHHh-----------ccCCeEEEEeccchhhhhhhhHhh
Q 011254 285 E----L--------------------T----NLRGNMELRNLLIA-----------TENKSILVVEDIDCSIELQDRFAK 325 (490)
Q Consensus 285 ~----~--------------------s----~~~~~~~l~~l~~~-----------~~~~sIl~iDdiD~l~~~~~r~~~ 325 (490)
. + . .+.+.-.+...+.. .....+|++|||+.+-
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~-------- 141 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE-------- 141 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC--------
Confidence 0 0 0 01111122222111 1234699999998762
Q ss_pred hhhcccccccccccccccCCchhhHHHHHHHHhcc---------cccCCCCcEEEEEecCCCC-CCCccccCCCceeeEE
Q 011254 326 AKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG---------LWSSCGDERIIIFTTNHKD-RLDPAFLRPGRMDVHI 395 (490)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg---------l~s~~~~~~iiI~TTN~~~-~LD~aLlRpGR~d~~I 395 (490)
..+.+.|++.|+. ........+++|+|+|..+ .++++|+. ||..+|
T Consensus 142 ----------------------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v 197 (334)
T PRK13407 142 ----------------------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSV 197 (334)
T ss_pred ----------------------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEE
Confidence 2345667776642 2111223578888888755 68999999 999999
Q ss_pred EeCCCCH-HHHHHHHHHhhC
Q 011254 396 HMSYCTS-CGFKMLASSYLG 414 (490)
Q Consensus 396 ~~~~p~~-~~r~~L~~~~l~ 414 (490)
.+++|.. +++.+++.+...
T Consensus 198 ~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 198 EVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred EcCCCCcHHHHHHHHHHhhc
Confidence 9999988 888888887554
No 139
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.32 E-value=2.3e-12 Score=114.87 Aligned_cols=105 Identities=30% Similarity=0.409 Sum_probs=71.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHHHH---------------hccCCeEEEEeccchhhhh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNLLI---------------ATENKSILVVEDIDCSIEL 319 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l~~---------------~~~~~sIl~iDdiD~l~~~ 319 (490)
++||+||||||||++|+.+|..++.+++.+.++...+..+|..... ...+++|+|||||+..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~-- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAP-- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCC--
Confidence 4899999999999999999999999999999988655554432211 01257899999998652
Q ss_pred hhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccc----------ccCCC-----CcEEEEEecCCCC----C
Q 011254 320 QDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGL----------WSSCG-----DERIIIFTTNHKD----R 380 (490)
Q Consensus 320 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl----------~s~~~-----~~~iiI~TTN~~~----~ 380 (490)
...+..|+..+|.- ..... .+..||+|+|..+ .
T Consensus 79 ----------------------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~ 130 (139)
T PF07728_consen 79 ----------------------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKE 130 (139)
T ss_dssp ----------------------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTT
T ss_pred ----------------------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCc
Confidence 12233344444321 00000 1388999999998 8
Q ss_pred CCccccCCCce
Q 011254 381 LDPAFLRPGRM 391 (490)
Q Consensus 381 LD~aLlRpGR~ 391 (490)
+++||++ ||
T Consensus 131 l~~al~~--Rf 139 (139)
T PF07728_consen 131 LSPALLD--RF 139 (139)
T ss_dssp TCHHHHT--T-
T ss_pred CCHHHHh--hC
Confidence 9999999 87
No 140
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.4e-10 Score=119.73 Aligned_cols=214 Identities=19% Similarity=0.226 Sum_probs=145.1
Q ss_pred cccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCc-----EEEEeccccCChH
Q 011254 219 DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD-----VYDLELTNLRGNM 293 (490)
Q Consensus 219 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-----~~~l~~s~~~~~~ 293 (490)
+.+.+-++..+++...+..++.+ ..|..+++|||||||||.+++-++.++.-. ++.+||....+..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 33777888888888777655543 224459999999999999999999998544 8889987774432
Q ss_pred H-HHHHHH------------------------hccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchh
Q 011254 294 E-LRNLLI------------------------ATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQ 348 (490)
Q Consensus 294 ~-l~~l~~------------------------~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (490)
+ +.+++. ......||++||+|.+.. .. .
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~-------------------------~~--~ 140 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD-------------------------KD--G 140 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc-------------------------cc--c
Confidence 2 122222 222457999999999964 11 1
Q ss_pred hHHHHHHHHhcccccCCCCcEEEEEecCCC---CCCCccccCCCce-eeEEEeCCCCHHHHHHHHHHhhCC--CCCCchH
Q 011254 349 VTLSGMLNFIDGLWSSCGDERIIIFTTNHK---DRLDPAFLRPGRM-DVHIHMSYCTSCGFKMLASSYLGI--TEHPLFL 422 (490)
Q Consensus 349 ~~ls~LL~~idgl~s~~~~~~iiI~TTN~~---~~LD~aLlRpGR~-d~~I~~~~p~~~~r~~L~~~~l~~--~~~~l~~ 422 (490)
..|-.|+...+.. ...+++|+.+|.. +.+||.+.. ++ ..+|.||..+.++...|+...... .+..+.+
T Consensus 141 ~~LY~L~r~~~~~----~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~ 214 (366)
T COG1474 141 EVLYSLLRAPGEN----KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDD 214 (366)
T ss_pred hHHHHHHhhcccc----ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCc
Confidence 3455555544433 2347889999876 478888875 33 345899999999999999977753 3444555
Q ss_pred HHHHhhhccCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHH
Q 011254 423 EVEGLIEKAKVTPADVAEQLMRNEVPEIALRELIQFLEIKRRESDESKAKEVKEERAEEAE 483 (490)
Q Consensus 423 ~i~~l~~~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~ 483 (490)
++-.++.. ++. ..++|+..|++-+..+.+...+........++..+++++.+
T Consensus 215 ~vl~lia~-------~~a--~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~ 266 (366)
T COG1474 215 DVLKLIAA-------LVA--AESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIE 266 (366)
T ss_pred cHHHHHHH-------HHH--HcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhh
Confidence 55444421 221 14569999999999999988877666666666666644433
No 141
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.31 E-value=3.6e-11 Score=115.96 Aligned_cols=174 Identities=18% Similarity=0.237 Sum_probs=100.4
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-----cCcEEEEeccc
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELTN 288 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~s~ 288 (490)
+.-|||+.+-.+.-+. ....+......+ +. .-..++||||+|+|||+|.+|+++++ +..++.++..+
T Consensus 3 ~~~tFdnfv~g~~N~~-a~~~~~~ia~~~------~~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~ 74 (219)
T PF00308_consen 3 PKYTFDNFVVGESNEL-AYAAAKAIAENP------GE-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE 74 (219)
T ss_dssp TT-SCCCS--TTTTHH-HHHHHHHHHHST------TT-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH
T ss_pred CCCccccCCcCCcHHH-HHHHHHHHHhcC------CC-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH
Confidence 4568999864333222 222233222222 22 22358999999999999999999985 56788887665
Q ss_pred cCC-------hHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccc
Q 011254 289 LRG-------NMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGL 361 (490)
Q Consensus 289 ~~~-------~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl 361 (490)
+.. ...+..+......-.+|+|||++.+.+. ..+...|.+.++.+
T Consensus 75 f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~----------------------------~~~q~~lf~l~n~~ 126 (219)
T PF00308_consen 75 FIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGK----------------------------QRTQEELFHLFNRL 126 (219)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTH----------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCc----------------------------hHHHHHHHHHHHHH
Confidence 421 1223344455567889999999988531 11233455555555
Q ss_pred ccCCCCcEEEEEecCCCCCC---CccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHh
Q 011254 362 WSSCGDERIIIFTTNHKDRL---DPAFLRPGRMD--VHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGL 427 (490)
Q Consensus 362 ~s~~~~~~iiI~TTN~~~~L---D~aLlRpGR~d--~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l 427 (490)
... +..+||.+...|..| +|.|.. ||. ..+++..|+.+.|..+++......+..+.+++..+
T Consensus 127 ~~~--~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~ 193 (219)
T PF00308_consen 127 IES--GKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEY 193 (219)
T ss_dssp HHT--TSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHH
T ss_pred Hhh--CCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 443 235555555666654 566766 654 47899999999999999988876665565554443
No 142
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.30 E-value=1.5e-11 Score=127.03 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=50.8
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhCC-CCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL 289 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 289 (490)
.|+|+++.|+.+...+..-.++...-..... -.++++||+||||||||++|++||..++.+++.++.+.+
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f 86 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhh
Confidence 3789999999997776532221111001111 125789999999999999999999999999999987654
No 143
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.29 E-value=2.1e-11 Score=125.81 Aligned_cols=70 Identities=19% Similarity=0.321 Sum_probs=51.5
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhC-CCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL 289 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 289 (490)
-++|+++.|+.+...+..-..+...-..++ -..|+++||+||||||||++++++|..++.+++.++.+.+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 368999999988777664322221111111 1245899999999999999999999999999999996644
No 144
>PRK06620 hypothetical protein; Validated
Probab=99.29 E-value=2.6e-11 Score=116.48 Aligned_cols=149 Identities=19% Similarity=0.270 Sum_probs=92.4
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCC-CCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR 290 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~ 290 (490)
..++-+|++++..+.-.. ....+..+.. .++. +..+.++||||||||||+|++++|+..+..+.. ....
T Consensus 9 ~~~~~tfd~Fvvg~~N~~-a~~~~~~~~~------~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~- 78 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQ-AYNIIKNWQC------GFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF- 78 (214)
T ss_pred CCCCCCchhhEecccHHH-HHHHHHHHHH------ccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-
Confidence 344568999876553322 3333433322 1222 224779999999999999999999988753322 1111
Q ss_pred ChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEE
Q 011254 291 GNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERI 370 (490)
Q Consensus 291 ~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~i 370 (490)
.. .. .....+|+|||||.+- ...+..++|.+. .. +..+
T Consensus 79 -~~---~~---~~~~d~lliDdi~~~~------------------------------~~~lf~l~N~~~---e~--g~~i 116 (214)
T PRK06620 79 -NE---EI---LEKYNAFIIEDIENWQ------------------------------EPALLHIFNIIN---EK--QKYL 116 (214)
T ss_pred -ch---hH---HhcCCEEEEeccccch------------------------------HHHHHHHHHHHH---hc--CCEE
Confidence 11 11 1245799999998431 123444555443 22 2366
Q ss_pred EEEecCCCCC--CCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCC
Q 011254 371 IIFTTNHKDR--LDPAFLRPGRMD--VHIHMSYCTSCGFKMLASSYLGI 415 (490)
Q Consensus 371 iI~TTN~~~~--LD~aLlRpGR~d--~~I~~~~p~~~~r~~L~~~~l~~ 415 (490)
||.++..|.. + |+|+. |+. ..+++..|+.+.+..++++.+..
T Consensus 117 lits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 117 LLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred EEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 6666666554 5 78887 775 36899999999999999877653
No 145
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.28 E-value=1.9e-11 Score=124.86 Aligned_cols=155 Identities=17% Similarity=0.261 Sum_probs=103.4
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------cEE-----
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-------DVY----- 282 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-------~~~----- 282 (490)
.-+|..|+|+++.|..|...+.. |...|+||.||+|||||+++++++..+.. +|.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 34799999999999998776552 23368999999999999999999887631 111
Q ss_pred -----------------------EEecccc---CChH------HHHHHHHh-----------ccCCeEEEEeccchhhhh
Q 011254 283 -----------------------DLELTNL---RGNM------ELRNLLIA-----------TENKSILVVEDIDCSIEL 319 (490)
Q Consensus 283 -----------------------~l~~s~~---~~~~------~l~~l~~~-----------~~~~sIl~iDdiD~l~~~ 319 (490)
.+.+..+ .+++ ++.+.|.. ..+..+|++|||+.+-.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~- 158 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD- 158 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH-
Confidence 0000011 0111 22222221 12468999999987732
Q ss_pred hhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhc---------ccccCCCCcEEEEEecCCCC-CCCccccCCC
Q 011254 320 QDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFID---------GLWSSCGDERIIIFTTNHKD-RLDPAFLRPG 389 (490)
Q Consensus 320 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~id---------gl~s~~~~~~iiI~TTN~~~-~LD~aLlRpG 389 (490)
.+.+.||..|+ |........+++|+|.|..+ .+.++|+.
T Consensus 159 -----------------------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld-- 207 (350)
T CHL00081 159 -----------------------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD-- 207 (350)
T ss_pred -----------------------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--
Confidence 23445666664 22211223467777777655 69999999
Q ss_pred ceeeEEEeCCCC-HHHHHHHHHHhhC
Q 011254 390 RMDVHIHMSYCT-SCGFKMLASSYLG 414 (490)
Q Consensus 390 R~d~~I~~~~p~-~~~r~~L~~~~l~ 414 (490)
||.++|.+++|+ .+.+.+|+++...
T Consensus 208 Rf~l~i~l~~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 208 RFGMHAEIRTVKDPELRVKIVEQRTS 233 (350)
T ss_pred HhCceeecCCCCChHHHHHHHHhhhc
Confidence 999999999998 5888888887643
No 146
>PHA02244 ATPase-like protein
Probab=99.28 E-value=3.5e-11 Score=122.60 Aligned_cols=118 Identities=22% Similarity=0.309 Sum_probs=80.2
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccc----c----CChHHHH--HHHHhccCCeEEEEeccchhhhhhhh
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTN----L----RGNMELR--NLLIATENKSILVVEDIDCSIELQDR 322 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~----~----~~~~~l~--~l~~~~~~~sIl~iDdiD~l~~~~~r 322 (490)
+..+||+||||||||++|++||..++.+++.++... + .....+. .++....++.+|+|||||.+..
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p---- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIP---- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCH----
Confidence 346999999999999999999999999999887321 0 0011111 3334456789999999997632
Q ss_pred HhhhhhcccccccccccccccCCchhhHHHHHHHHhc--------ccccCCCCcEEEEEecCCC-----------CCCCc
Q 011254 323 FAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFID--------GLWSSCGDERIIIFTTNHK-----------DRLDP 383 (490)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~id--------gl~s~~~~~~iiI~TTN~~-----------~~LD~ 383 (490)
.++..|...++ +... ...++-+|+|+|.+ ..|++
T Consensus 195 --------------------------~vq~~L~~lLd~r~l~l~g~~i~-~h~~FRlIATsN~~~~G~~~~y~G~k~L~~ 247 (383)
T PHA02244 195 --------------------------EALIIINSAIANKFFDFADERVT-AHEDFRVISAGNTLGKGADHIYVARNKIDG 247 (383)
T ss_pred --------------------------HHHHHHHHHhccCeEEecCcEEe-cCCCEEEEEeeCCCccCcccccCCCcccCH
Confidence 12223333332 2211 12346789999973 57899
Q ss_pred cccCCCceeeEEEeCCCCHHH
Q 011254 384 AFLRPGRMDVHIHMSYCTSCG 404 (490)
Q Consensus 384 aLlRpGR~d~~I~~~~p~~~~ 404 (490)
|++. || .+|+|++|+..+
T Consensus 248 AllD--RF-v~I~~dyp~~~E 265 (383)
T PHA02244 248 ATLD--RF-APIEFDYDEKIE 265 (383)
T ss_pred HHHh--hc-EEeeCCCCcHHH
Confidence 9999 99 689999998543
No 147
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7.2e-11 Score=129.90 Aligned_cols=197 Identities=19% Similarity=0.290 Sum_probs=139.2
Q ss_pred cccccChhHHHHHHHHHHHHHHcHHHHHHhCCCC----CcceeeeCCCCCcHHHHHHHHHHhcc---CcEEEEeccccCC
Q 011254 219 DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAW----KRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELTNLRG 291 (490)
Q Consensus 219 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~----~rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~~s~~~~ 291 (490)
..|+|+++..+.|.+.+.. .+.|..- -..+||.||+|+|||.||+++|..+. -.++.+|+|++..
T Consensus 491 ~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 3678888888888777764 3344322 23578899999999999999999997 8899999999977
Q ss_pred hHHHHHHHHhcc------------------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHH
Q 011254 292 NMELRNLLIATE------------------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSG 353 (490)
Q Consensus 292 ~~~l~~l~~~~~------------------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 353 (490)
...+.+++..-+ ..|||++|||+.. ....++-
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA------------------------------HpdV~ni 612 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA------------------------------HPDVFNL 612 (786)
T ss_pred HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc------------------------------CHHHHHH
Confidence 777777664422 2489999999855 2456788
Q ss_pred HHHHhcc--cccCCC-----CcEEEEEecCCCC----------------------------CCCccccCCCceeeEEEeC
Q 011254 354 MLNFIDG--LWSSCG-----DERIIIFTTNHKD----------------------------RLDPAFLRPGRMDVHIHMS 398 (490)
Q Consensus 354 LL~~idg--l~s~~~-----~~~iiI~TTN~~~----------------------------~LD~aLlRpGR~d~~I~~~ 398 (490)
||+.+|. +....| .+.|||||||-=. ...|+|+. |+|..|.|.
T Consensus 613 lLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~ 690 (786)
T COG0542 613 LLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFN 690 (786)
T ss_pred HHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEecc
Confidence 8998872 222222 3579999999310 13466666 999999999
Q ss_pred CCCHHHHHHHHHHhhCCCCCCchHHHHHhhhc----cCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 011254 399 YCTSCGFKMLASSYLGITEHPLFLEVEGLIEK----AKVTPADVAEQLMRNEVPEIALRELIQFLEIKR 463 (490)
Q Consensus 399 ~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~----~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~~~ 463 (490)
..+.+...+|+...+. ++...+.+ ..+|++-...+.-+..|+.-..+.|..++++.-
T Consensus 691 ~L~~~~l~~Iv~~~L~--------~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i 751 (786)
T COG0542 691 PLSKEVLERIVDLQLN--------RLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEI 751 (786)
T ss_pred CCCHHHHHHHHHHHHH--------HHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHH
Confidence 9999999999998884 33333322 236666665555555566666666666665443
No 148
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.27 E-value=8.1e-11 Score=134.00 Aligned_cols=157 Identities=17% Similarity=0.328 Sum_probs=108.6
Q ss_pred ccccccChhHHHHHHHHHHHHHHcHHHHHHhCCC---CC-cceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccC
Q 011254 218 FDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKA---WK-RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLR 290 (490)
Q Consensus 218 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~---~~-rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~ 290 (490)
++.|+|++...+.|...+..... |.. .| ..+||+||||||||++|++||+.+ +.+++.++++.+.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~--------gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRA--------GLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHh--------cccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 45788998888888887764321 211 12 248999999999999999999987 4578888888764
Q ss_pred ChHHHHHHH---------------Hhc---cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHH
Q 011254 291 GNMELRNLL---------------IAT---ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLS 352 (490)
Q Consensus 291 ~~~~l~~l~---------------~~~---~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 352 (490)
......+++ ... ...+||+|||||.+- ....+
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~------------------------------~~v~~ 688 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH------------------------------PDVFN 688 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC------------------------------HHHHH
Confidence 333333332 111 234899999998662 22455
Q ss_pred HHHHHhc-cc-ccCC-----CCcEEEEEecCCC-------------------------CCCCccccCCCceeeEEEeCCC
Q 011254 353 GMLNFID-GL-WSSC-----GDERIIIFTTNHK-------------------------DRLDPAFLRPGRMDVHIHMSYC 400 (490)
Q Consensus 353 ~LL~~id-gl-~s~~-----~~~~iiI~TTN~~-------------------------~~LD~aLlRpGR~d~~I~~~~p 400 (490)
.|++.+| |. .... -.+.+||+|||.. ..+.|+|+. |+|..|.|.++
T Consensus 689 ~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL 766 (857)
T PRK10865 689 ILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPL 766 (857)
T ss_pred HHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCC
Confidence 6777775 21 1111 1245899999972 124577887 99999999999
Q ss_pred CHHHHHHHHHHhhC
Q 011254 401 TSCGFKMLASSYLG 414 (490)
Q Consensus 401 ~~~~r~~L~~~~l~ 414 (490)
+.+....|++.++.
T Consensus 767 ~~edl~~Iv~~~L~ 780 (857)
T PRK10865 767 GEQHIASIAQIQLQ 780 (857)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998874
No 149
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.27 E-value=9.1e-11 Score=125.82 Aligned_cols=173 Identities=20% Similarity=0.286 Sum_probs=118.2
Q ss_pred cceecccCCCCCccccccChhHHHHHHHHHHHHHH---c--------------HHHHH----HhCCCCCcceeeeCCCCC
Q 011254 206 VWQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVK---R--------------KEFYR----NVGKAWKRGYLLYGPPGT 264 (490)
Q Consensus 206 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~---~--------------~~~y~----~~g~~~~rg~LL~GPpGt 264 (490)
.|. .-..|..|.+|.+++.+-+.+.-.|+.|=- + ++.+. ..+.|.++-.||+||||-
T Consensus 260 LWV--dky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 260 LWV--DKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred eee--cccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 564 356789999999999999999888876521 1 01111 124566778999999999
Q ss_pred cHHHHHHHHHHhccCcEEEEeccccCChHHHHHHHHhc----------cCCeEEEEeccchhhhhhhhHhhhhhcccccc
Q 011254 265 GKSSLIAAMANYLNFDVYDLELTNLRGNMELRNLLIAT----------ENKSILVVEDIDCSIELQDRFAKAKATNAMDL 334 (490)
Q Consensus 265 GKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l~~~~----------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~ 334 (490)
||||||+.||+..||.+++++.++-.+...++.-+..+ .+|.+|||||||....
T Consensus 338 GKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~---------------- 401 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR---------------- 401 (877)
T ss_pred ChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcH----------------
Confidence 99999999999999999999999988877777666543 3799999999995531
Q ss_pred cccccccccCCchhhHHHHHHHHhc-------ccccC----------CCCcEEEEEecCCCCCCCcccc--CCCceeeEE
Q 011254 335 NVIQPVMNLNQVPQVTLSGMLNFID-------GLWSS----------CGDERIIIFTTNHKDRLDPAFL--RPGRMDVHI 395 (490)
Q Consensus 335 ~~~~~~~~~~~~~~~~ls~LL~~id-------gl~s~----------~~~~~iiI~TTN~~~~LD~aLl--RpGR~d~~I 395 (490)
..+..+|..+. |-... ..=-|-||+.+|. ..-|||. | -+...|
T Consensus 402 --------------~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr--~~A~ii 463 (877)
T KOG1969|consen 402 --------------AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLR--PFAEII 463 (877)
T ss_pred --------------HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcc--cceEEE
Confidence 11111222111 10000 0012579999996 3457774 5 577889
Q ss_pred EeCCCCHHHHHHHHHHhhC
Q 011254 396 HMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 396 ~~~~p~~~~r~~L~~~~l~ 414 (490)
+|..|......+-++..+.
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~ 482 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICH 482 (877)
T ss_pred EecCCChhHHHHHHHHHHh
Confidence 9998888765544444443
No 150
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.27 E-value=1.6e-10 Score=118.16 Aligned_cols=130 Identities=24% Similarity=0.263 Sum_probs=90.4
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHH------HHHHH------HhccC---C---eEEEEeccc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNME------LRNLL------IATEN---K---SILVVEDID 314 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~------l~~l~------~~~~~---~---sIl~iDdiD 314 (490)
.+.+||-||||||||++|+++|..++.+++.++|+.-...++ ..... ...+. . +|+++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 467999999999999999999999999999999986533222 22211 11111 1 399999998
Q ss_pred hhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcc-------cc-cCCCCcEEEEEecCC-----CCCC
Q 011254 315 CSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG-------LW-SSCGDERIIIFTTNH-----KDRL 381 (490)
Q Consensus 315 ~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg-------l~-s~~~~~~iiI~TTN~-----~~~L 381 (490)
..- ..+.+.||..|+. .. -.-....++|+|+|. ...|
T Consensus 123 ra~------------------------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l 172 (329)
T COG0714 123 RAP------------------------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPL 172 (329)
T ss_pred cCC------------------------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCC
Confidence 652 3455667777663 11 111234788888893 4468
Q ss_pred CccccCCCceeeEEEeCCC-CHHHHHHHHHHhhC
Q 011254 382 DPAFLRPGRMDVHIHMSYC-TSCGFKMLASSYLG 414 (490)
Q Consensus 382 D~aLlRpGR~d~~I~~~~p-~~~~r~~L~~~~l~ 414 (490)
++|+++ ||-..++++|| ..++...+......
T Consensus 173 ~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 173 PEALLD--RFLLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred CHHHHh--hEEEEEecCCCCchHHHHHHHHhCcc
Confidence 999999 99999999999 55555555555544
No 151
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.26 E-value=1.1e-10 Score=109.55 Aligned_cols=125 Identities=20% Similarity=0.264 Sum_probs=90.9
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhccC------------------------cEEEEecccc-CChHHHHHHHHhcc--
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNF------------------------DVYDLELTNL-RGNMELRNLLIATE-- 303 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------------------~~~~l~~s~~-~~~~~l~~l~~~~~-- 303 (490)
..+..||||||||+|||++++++|+.+.. ++..+....- .+-+.++.++..+.
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~ 91 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRT 91 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccC
Confidence 34578999999999999999999998743 2333332211 23456666565442
Q ss_pred ----CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCC
Q 011254 304 ----NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKD 379 (490)
Q Consensus 304 ----~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~ 379 (490)
.+.||+|||+|.+-. ...+.||..|+.. +...++|++||.+.
T Consensus 92 ~~~~~~kviiide~~~l~~------------------------------~~~~~Ll~~le~~----~~~~~~il~~~~~~ 137 (188)
T TIGR00678 92 PQESGRRVVIIEDAERMNE------------------------------AAANALLKTLEEP----PPNTLFILITPSPE 137 (188)
T ss_pred cccCCeEEEEEechhhhCH------------------------------HHHHHHHHHhcCC----CCCeEEEEEECChH
Confidence 457999999998732 2345688888763 23477888888889
Q ss_pred CCCccccCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011254 380 RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSY 412 (490)
Q Consensus 380 ~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~ 412 (490)
.|.+++.+ |+ ..++|+.|+.++...++...
T Consensus 138 ~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 138 KLLPTIRS--RC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred hChHHHHh--hc-EEeeCCCCCHHHHHHHHHHc
Confidence 99999998 66 47999999999988777755
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.24 E-value=1.5e-10 Score=131.66 Aligned_cols=195 Identities=20% Similarity=0.264 Sum_probs=121.5
Q ss_pred cccccChhHHHHHHHHHHHHHHcHHHHHHhCCC---CC-cceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCC
Q 011254 219 DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKA---WK-RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRG 291 (490)
Q Consensus 219 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~---~~-rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~ 291 (490)
+.|+|+++..+.|...+... +.|.. -| ..+||+||||||||+||++||..+ +.+++.++++++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 46778888888887766532 22221 12 248999999999999999999987 46788888877632
Q ss_pred hHH-------------------HHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHH
Q 011254 292 NME-------------------LRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLS 352 (490)
Q Consensus 292 ~~~-------------------l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 352 (490)
... |...+.. ...+||+|||||.+- ....+
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~-~p~~VvllDeieka~------------------------------~~v~~ 629 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRK-KPYTVVLFDEIEKAH------------------------------PDIFN 629 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHh-CCCeEEEECChhhCC------------------------------HHHHH
Confidence 222 2222221 234899999999762 23456
Q ss_pred HHHHHhcc-cc-cCC-----CCcEEEEEecCCCCC-------------------------------------CCccccCC
Q 011254 353 GMLNFIDG-LW-SSC-----GDERIIIFTTNHKDR-------------------------------------LDPAFLRP 388 (490)
Q Consensus 353 ~LL~~idg-l~-s~~-----~~~~iiI~TTN~~~~-------------------------------------LD~aLlRp 388 (490)
.||..+|. .- ... -.+.+||+|||.... +.|.|+.
T Consensus 630 ~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln- 708 (821)
T CHL00095 630 LLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN- 708 (821)
T ss_pred HHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc-
Confidence 67777773 21 111 135799999995311 2245565
Q ss_pred CceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhh---ccCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 011254 389 GRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIE---KAKVTPADVAEQLMRNEVPEIALRELIQFLEI 461 (490)
Q Consensus 389 GR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~---~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~ 461 (490)
|+|..|.|...+.++..+|+...+... ...+.. ...+++.-+..+.-...++....+.|...+++
T Consensus 709 -Rid~ii~F~pL~~~~l~~Iv~~~l~~l-------~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~ 776 (821)
T CHL00095 709 -RLDEIIVFRQLTKNDVWEIAEIMLKNL-------FKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMR 776 (821)
T ss_pred -cCCeEEEeCCCCHHHHHHHHHHHHHHH-------HHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence 999999999999999999998777421 111222 13466655544433334444444444444443
No 153
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.23 E-value=2.4e-10 Score=130.52 Aligned_cols=156 Identities=19% Similarity=0.329 Sum_probs=107.7
Q ss_pred cccccChhHHHHHHHHHHHHHHcHHHHHHhCC----CCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCC
Q 011254 219 DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGK----AWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRG 291 (490)
Q Consensus 219 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~----~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~ 291 (490)
..|+|++...+.|.+.+.... .|. .+...+||+||||||||++|++||..+ +.+++.++++.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHHh--------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 467888888888887776432 121 122358999999999999999999987 46888899887643
Q ss_pred hHHHHHHH---------------H---hccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHH
Q 011254 292 NMELRNLL---------------I---ATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSG 353 (490)
Q Consensus 292 ~~~l~~l~---------------~---~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 353 (490)
...+.+++ . .....+||+|||||.+- ....+.
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~------------------------------~~v~~~ 686 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH------------------------------PDVFNV 686 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC------------------------------HHHHHH
Confidence 33222221 1 11245799999999662 234566
Q ss_pred HHHHhc-cc-ccCC-----CCcEEEEEecCCCC-------------------------CCCccccCCCceeeEEEeCCCC
Q 011254 354 MLNFID-GL-WSSC-----GDERIIIFTTNHKD-------------------------RLDPAFLRPGRMDVHIHMSYCT 401 (490)
Q Consensus 354 LL~~id-gl-~s~~-----~~~~iiI~TTN~~~-------------------------~LD~aLlRpGR~d~~I~~~~p~ 401 (490)
||+.+| |. .... -.+.+||+|||... .+.|.|+. |+|..|.|.+++
T Consensus 687 Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~ 764 (852)
T TIGR03346 687 LLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLG 764 (852)
T ss_pred HHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcC
Confidence 777775 22 1111 13578999999721 13456665 999999999999
Q ss_pred HHHHHHHHHHhhC
Q 011254 402 SCGFKMLASSYLG 414 (490)
Q Consensus 402 ~~~r~~L~~~~l~ 414 (490)
.+....|+...+.
T Consensus 765 ~e~l~~I~~l~L~ 777 (852)
T TIGR03346 765 REQIARIVEIQLG 777 (852)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987763
No 154
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.21 E-value=1.5e-10 Score=123.04 Aligned_cols=187 Identities=13% Similarity=0.230 Sum_probs=112.7
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-----cCcEEEEecccc
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELTNL 289 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~s~~ 289 (490)
+.||++.+..+.-. .....+..+...+ |.. ..+++||||+|||||+|++|+++++ +..++.++..++
T Consensus 111 ~~tFdnFv~g~~n~-~A~~aa~~~a~~~------~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSNE-QAFIAVQTVSKNP------GIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcHH-HHHHHHHHHHhCc------Ccc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 46888887444332 2333333332221 222 2569999999999999999999965 467777876654
Q ss_pred CCh---------HHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcc
Q 011254 290 RGN---------MELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG 360 (490)
Q Consensus 290 ~~~---------~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg 360 (490)
... ..+..+........+|+||||+.+.+ . ..+...|...++.
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~-------------------------k---~~~~e~lf~l~N~ 234 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY-------------------------K---EKTNEIFFTIFNN 234 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC-------------------------C---HHHHHHHHHHHHH
Confidence 210 22333334445678999999997732 0 1122234444443
Q ss_pred cccCCCCcEEEEEecCC-CC---CCCccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCCCCC--CchHHH-HHhhhcc
Q 011254 361 LWSSCGDERIIIFTTNH-KD---RLDPAFLRPGRM--DVHIHMSYCTSCGFKMLASSYLGITEH--PLFLEV-EGLIEKA 431 (490)
Q Consensus 361 l~s~~~~~~iiI~TTN~-~~---~LD~aLlRpGR~--d~~I~~~~p~~~~r~~L~~~~l~~~~~--~l~~~i-~~l~~~~ 431 (490)
+.... ..||+|+|. |+ .+++.|.. || ...+.+..|+.+++..++++.+...+. .+.+++ .-++...
T Consensus 235 ~~~~~---k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~ 309 (450)
T PRK14087 235 FIEND---KQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYY 309 (450)
T ss_pred HHHcC---CcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHcc
Confidence 33321 245666664 33 45788887 77 477889999999999999988865432 344443 3334444
Q ss_pred CCCHHHHHHHH
Q 011254 432 KVTPADVAEQL 442 (490)
Q Consensus 432 ~~tpa~i~~~l 442 (490)
.-.+..+...|
T Consensus 310 ~gd~R~L~gaL 320 (450)
T PRK14087 310 SDDVRKIKGSV 320 (450)
T ss_pred CCCHHHHHHHH
Confidence 44555554444
No 155
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=1.1e-09 Score=111.02 Aligned_cols=174 Identities=15% Similarity=0.190 Sum_probs=118.3
Q ss_pred CccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-----------------
Q 011254 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF----------------- 279 (490)
Q Consensus 217 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~----------------- 279 (490)
.|++|+|++.+++.+...+.. ...+..|||+||+|+||+++|.++|+.+-.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 489999999999988877652 234568999999999999999999998732
Q ss_pred -cEEEEecccc-----------------------CChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhc
Q 011254 280 -DVYDLELTNL-----------------------RGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKAT 329 (490)
Q Consensus 280 -~~~~l~~s~~-----------------------~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~ 329 (490)
|++.+..... -.-++++++...+. ..-|++||++|.+-
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------ 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------
Confidence 2233322100 01134556544432 45799999998772
Q ss_pred ccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHH
Q 011254 330 NAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLA 409 (490)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~ 409 (490)
....+.||..|+... ..++|++|+.++.|-|+++. |. ..|+|+.++.++....+
T Consensus 138 ------------------~~aaNaLLK~LEEPp-----~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L 191 (314)
T PRK07399 138 ------------------EAAANALLKTLEEPG-----NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVL 191 (314)
T ss_pred ------------------HHHHHHHHHHHhCCC-----CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHH
Confidence 224567899888742 24678888899999999998 76 77999999999988888
Q ss_pred HHhhCCCCCCchHHHHHhhhccCCCHHHHHHHH
Q 011254 410 SSYLGITEHPLFLEVEGLIEKAKVTPADVAEQL 442 (490)
Q Consensus 410 ~~~l~~~~~~l~~~i~~l~~~~~~tpa~i~~~l 442 (490)
........ ...+...++...+-+|....+.+
T Consensus 192 ~~~~~~~~--~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 192 KRLGDEEI--LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred HHhhcccc--chhHHHHHHHHcCCCHHHHHHHH
Confidence 86543221 11123444444455565554433
No 156
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.20 E-value=3.1e-10 Score=129.02 Aligned_cols=156 Identities=18% Similarity=0.289 Sum_probs=106.4
Q ss_pred cccccChhHHHHHHHHHHHHHHcHHHHHHhCC-CCCcc-eeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCChH
Q 011254 219 DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGK-AWKRG-YLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGNM 293 (490)
Q Consensus 219 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~-~~~rg-~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~ 293 (490)
..|+|+++..+.|.+.+...... +.. ..|.| +||+||||||||.+|+++|..+ ...++.++++++....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~g------l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAG------LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcC------CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhh
Confidence 36789888888888877643221 111 12444 7999999999999999999998 4578888887763222
Q ss_pred H-------------------HHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHH
Q 011254 294 E-------------------LRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGM 354 (490)
Q Consensus 294 ~-------------------l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 354 (490)
. |...+.. ...+||+|||||.+- ....+-|
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~~-~p~svvllDEieka~------------------------------~~v~~~L 688 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVRR-KPYSVVLLDEVEKAH------------------------------PDVLELF 688 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHHh-CCCcEEEEechhhcC------------------------------HHHHHHH
Confidence 2 2222322 456999999998652 2234556
Q ss_pred HHHhcc-c-ccCCC-----CcEEEEEecCCCC-----------------------------CCCccccCCCceeeEEEeC
Q 011254 355 LNFIDG-L-WSSCG-----DERIIIFTTNHKD-----------------------------RLDPAFLRPGRMDVHIHMS 398 (490)
Q Consensus 355 L~~idg-l-~s~~~-----~~~iiI~TTN~~~-----------------------------~LD~aLlRpGR~d~~I~~~ 398 (490)
+..+|. . ....| .+.+||+|||-.. .+.|+|+. |++ .|.|.
T Consensus 689 lq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~ 765 (852)
T TIGR03345 689 YQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYL 765 (852)
T ss_pred HHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeC
Confidence 666652 1 11111 3579999999411 14566776 998 78999
Q ss_pred CCCHHHHHHHHHHhhC
Q 011254 399 YCTSCGFKMLASSYLG 414 (490)
Q Consensus 399 ~p~~~~r~~L~~~~l~ 414 (490)
..+.+...+|+...+.
T Consensus 766 pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 766 PLDDDVLAAIVRLKLD 781 (852)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999997773
No 157
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.20 E-value=1.8e-10 Score=117.52 Aligned_cols=153 Identities=20% Similarity=0.316 Sum_probs=101.8
Q ss_pred CccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-------cCcEE-------
Q 011254 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-------NFDVY------- 282 (490)
Q Consensus 217 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-------~~~~~------- 282 (490)
.|..|+|++++|..+.-.+.. |...++||.||||||||++++++++.+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 488999999999887655442 123579999999999999999999877 22211
Q ss_pred --------------------------EEec----cccCChHHHHHHHH-----------hccCCeEEEEeccchhhhhhh
Q 011254 283 --------------------------DLEL----TNLRGNMELRNLLI-----------ATENKSILVVEDIDCSIELQD 321 (490)
Q Consensus 283 --------------------------~l~~----s~~~~~~~l~~l~~-----------~~~~~sIl~iDdiD~l~~~~~ 321 (490)
++.. ..+.+.-++...+. ...++.+|+||||+.+-
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~---- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE---- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC----
Confidence 1000 01122223333321 11245899999999762
Q ss_pred hHhhhhhcccccccccccccccCCchhhHHHHHHHHhc---------ccccCCCCcEEEEEecCCCC-CCCccccCCCce
Q 011254 322 RFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFID---------GLWSSCGDERIIIFTTNHKD-RLDPAFLRPGRM 391 (490)
Q Consensus 322 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~id---------gl~s~~~~~~iiI~TTN~~~-~LD~aLlRpGR~ 391 (490)
..+.+.||+.|+ |........+++|+|+|..+ .++++|+. ||
T Consensus 145 --------------------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf 196 (337)
T TIGR02030 145 --------------------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RF 196 (337)
T ss_pred --------------------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hc
Confidence 223455666663 22222223467888888655 68999999 99
Q ss_pred eeEEEeCCCCH-HHHHHHHHHhhC
Q 011254 392 DVHIHMSYCTS-CGFKMLASSYLG 414 (490)
Q Consensus 392 d~~I~~~~p~~-~~r~~L~~~~l~ 414 (490)
.++|.+++|.. +++.+|+++...
T Consensus 197 ~l~i~l~~p~~~eer~eIL~~~~~ 220 (337)
T TIGR02030 197 GLHAEIRTVRDVELRVEIVERRTE 220 (337)
T ss_pred ceEEECCCCCCHHHHHHHHHhhhh
Confidence 99999999986 888888887543
No 158
>PRK09087 hypothetical protein; Validated
Probab=99.19 E-value=1.6e-10 Score=111.93 Aligned_cols=160 Identities=13% Similarity=0.179 Sum_probs=95.2
Q ss_pred ccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCC-CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc
Q 011254 211 NLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAW-KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL 289 (490)
Q Consensus 211 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~-~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 289 (490)
...+..+|++.+..+.-.. ....+..+ . .| .+.++||||+|+|||+|++++++..+..++... .+
T Consensus 13 ~~~~~~~~~~Fi~~~~N~~-a~~~l~~~----------~-~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~~ 78 (226)
T PRK09087 13 SHDPAYGRDDLLVTESNRA-AVSLVDHW----------P-NWPSPVVVLAGPVGSGKTHLASIWREKSDALLIHPN--EI 78 (226)
T ss_pred CCCCCCChhceeecCchHH-HHHHHHhc----------c-cCCCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHH--Hc
Confidence 3445578999985332222 22222211 1 12 234899999999999999999998766644432 22
Q ss_pred CChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcE
Q 011254 290 RGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDER 369 (490)
Q Consensus 290 ~~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~ 369 (490)
. .. .+.... ..+|+|||+|.+.. ... +|++.++.+... +..
T Consensus 79 ~-~~----~~~~~~-~~~l~iDDi~~~~~----------------------------~~~---~lf~l~n~~~~~--g~~ 119 (226)
T PRK09087 79 G-SD----AANAAA-EGPVLIEDIDAGGF----------------------------DET---GLFHLINSVRQA--GTS 119 (226)
T ss_pred c-hH----HHHhhh-cCeEEEECCCCCCC----------------------------CHH---HHHHHHHHHHhC--CCe
Confidence 1 11 111111 25889999996521 011 244444444332 224
Q ss_pred EEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHH
Q 011254 370 IIIFTTNHKDR---LDPAFLRPGRMD--VHIHMSYCTSCGFKMLASSYLGITEHPLFLEVE 425 (490)
Q Consensus 370 iiI~TTN~~~~---LD~aLlRpGR~d--~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~ 425 (490)
+||.++..|.. ..|+|+. |+. ..+++..|+.+.+..++++.+...+..+.+++.
T Consensus 120 ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~ 178 (226)
T PRK09087 120 LLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVV 178 (226)
T ss_pred EEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 55544444442 3678887 774 789999999999999999888665555544443
No 159
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=1.2e-09 Score=111.70 Aligned_cols=146 Identities=19% Similarity=0.259 Sum_probs=105.2
Q ss_pred Ccccccc-ChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC----------------
Q 011254 217 TFDTLAM-DSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF---------------- 279 (490)
Q Consensus 217 ~f~~l~g-~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~---------------- 279 (490)
.|++|.| ++.+++.+...+. ....+..||||||+|+||+++|+++|+.+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~------------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA------------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4778887 7777777766553 1345678999999999999999999998732
Q ss_pred --------cEEEEecccc-CChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccC
Q 011254 280 --------DVYDLELTNL-RGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLN 344 (490)
Q Consensus 280 --------~~~~l~~s~~-~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 344 (490)
++..+....- .+-++++.+....+ ..-|++|||+|.+-
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------------------- 123 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------------------- 123 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC---------------------------
Confidence 2333322211 22356666665443 35699999998772
Q ss_pred CchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011254 345 QVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASS 411 (490)
Q Consensus 345 ~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~ 411 (490)
....+.||..|+.. ++..++|++|+.+..|-|+++. |. .+++|+.|+.++....++.
T Consensus 124 ---~~a~NaLLK~LEEP----p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 124 ---ASAANSLLKFLEEP----SGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ---HHHHHHHHHHhcCC----CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 23456799998864 3457888899999999999988 76 6799999999887666653
No 160
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.15 E-value=1.8e-10 Score=112.54 Aligned_cols=98 Identities=21% Similarity=0.391 Sum_probs=70.4
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccc
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTN 288 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~ 288 (490)
..++.+|++.....+..+.+...+..|.... . ....+++|+||||||||+|+.|||+++ +..++.++..+
T Consensus 65 ~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~---~----~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~ 137 (244)
T PRK07952 65 LHQNCSFENYRVECEGQMNALSKARQYVEEF---D----GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD 137 (244)
T ss_pred cccCCccccccCCCchHHHHHHHHHHHHHhh---c----cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence 4567899999766555555666666555321 1 113589999999999999999999998 77888887766
Q ss_pred cC---------ChHHHHHHHHhccCCeEEEEeccchh
Q 011254 289 LR---------GNMELRNLLIATENKSILVVEDIDCS 316 (490)
Q Consensus 289 ~~---------~~~~l~~l~~~~~~~sIl~iDdiD~l 316 (490)
+. .+....+++....+..+|+|||+++.
T Consensus 138 l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~ 174 (244)
T PRK07952 138 IMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQ 174 (244)
T ss_pred HHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCC
Confidence 52 11233456666678899999999875
No 161
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=2.1e-09 Score=109.62 Aligned_cols=125 Identities=18% Similarity=0.255 Sum_probs=94.7
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhccC------------------------cEEEEeccc---cCChHHHHHHHHhcc
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNF------------------------DVYDLELTN---LRGNMELRNLLIATE 303 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------------------~~~~l~~s~---~~~~~~l~~l~~~~~ 303 (490)
..+.+|||+||+|+||+++|+++|+.+.+ +++.+.... ..+-+++|++.....
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~ 99 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVV 99 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999999998853 455554321 234567777765543
Q ss_pred ------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCC
Q 011254 304 ------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNH 377 (490)
Q Consensus 304 ------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~ 377 (490)
..-|++||++|.+- ....+.||..++.. +++.++|++|+.
T Consensus 100 ~~~~~~~~kv~iI~~a~~m~------------------------------~~aaNaLLK~LEEP----p~~~~fiL~t~~ 145 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMN------------------------------RNAANALLKSLEEP----SGDTVLLLISHQ 145 (328)
T ss_pred hccccCCCeEEEECChhhCC------------------------------HHHHHHHHHHHhCC----CCCeEEEEEECC
Confidence 34688999999872 23457799998874 345889999999
Q ss_pred CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011254 378 KDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSY 412 (490)
Q Consensus 378 ~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~ 412 (490)
++.|.|.++. |+ ..+.|+.|+.++....+...
T Consensus 146 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 146 PSRLLPTIKS--RC-QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred hhhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHh
Confidence 9999999998 87 55999999998877666543
No 162
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.13 E-value=4.4e-10 Score=117.41 Aligned_cols=150 Identities=20% Similarity=0.319 Sum_probs=80.0
Q ss_pred ccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCc-----EEEEecc-----
Q 011254 218 FDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD-----VYDLELT----- 287 (490)
Q Consensus 218 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-----~~~l~~s----- 287 (490)
++++.+.++..+.+...+. -++.++|+||||||||++|+++|..+... +..+..+
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 4555565555555544433 25689999999999999999999988531 1111111
Q ss_pred -cc------C------ChHHHHHHHHhcc----CCeEEEEeccchhhhhhhh-HhhhhhcccccccccccccccCCchhh
Q 011254 288 -NL------R------GNMELRNLLIATE----NKSILVVEDIDCSIELQDR-FAKAKATNAMDLNVIQPVMNLNQVPQV 349 (490)
Q Consensus 288 -~~------~------~~~~l~~l~~~~~----~~sIl~iDdiD~l~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (490)
++ . ...-+.+++..+. .+.|||||||+..-. ++ .+..-. ..+.. +.. .. ...
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani--~kiFGel~~--lLE~~--~rg---~~-~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL--SKVFGEVMM--LMEHD--KRG---EN-WSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH--HHhhhhhhh--hcccc--ccc---cc-cce
Confidence 10 0 0112333333332 579999999986532 11 111000 00000 000 00 000
Q ss_pred HHHHHHHHh--cccccCCCCcEEEEEecCCCC----CCCccccCCCceeeEEEeCC
Q 011254 350 TLSGMLNFI--DGLWSSCGDERIIIFTTNHKD----RLDPAFLRPGRMDVHIHMSY 399 (490)
Q Consensus 350 ~ls~LL~~i--dgl~s~~~~~~iiI~TTN~~~----~LD~aLlRpGR~d~~I~~~~ 399 (490)
.+. ...- +.+. -..++.||+|+|..| .+|.||+| ||.. |++..
T Consensus 309 ~l~--y~e~d~e~f~--iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 309 PLT--YSENDEERFY--VPENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIEP 357 (459)
T ss_pred eee--cccccccccc--CCCCeEEEEecCccccchhhccHHHHh--hhhe-EEecC
Confidence 000 0000 1122 235699999999988 79999999 9954 67653
No 163
>PRK08116 hypothetical protein; Validated
Probab=99.12 E-value=4.2e-10 Score=111.73 Aligned_cols=149 Identities=21% Similarity=0.319 Sum_probs=88.7
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCC-
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRG- 291 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~- 291 (490)
.||++....+... .+...+..+... |... ...++|++||||||||||+|+.|||+++ +.+++.++..++..
T Consensus 82 ~tFdnf~~~~~~~-~a~~~a~~y~~~---~~~~-~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 82 STFENFLFDKGSE-KAYKIARKYVKK---FEEM-KKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred cchhcccCChHHH-HHHHHHHHHHHH---HHhh-ccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 3677665444332 233334434332 1111 1234689999999999999999999986 78888888765411
Q ss_pred ---------hHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccc
Q 011254 292 ---------NMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLW 362 (490)
Q Consensus 292 ---------~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~ 362 (490)
......++....+..+|+|||+...- ........|.+.+|...
T Consensus 157 i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~----------------------------~t~~~~~~l~~iin~r~ 208 (268)
T PRK08116 157 IKSTYKSSGKEDENEIIRSLVNADLLILDDLGAER----------------------------DTEWAREKVYNIIDSRY 208 (268)
T ss_pred HHHHHhccccccHHHHHHHhcCCCEEEEecccCCC----------------------------CCHHHHHHHHHHHHHHH
Confidence 11223445555667899999996321 01223345566666543
Q ss_pred cCCCCcEEEEEecCCC-CC----CCccccCCCce---eeEEEeCCCCH
Q 011254 363 SSCGDERIIIFTTNHK-DR----LDPAFLRPGRM---DVHIHMSYCTS 402 (490)
Q Consensus 363 s~~~~~~iiI~TTN~~-~~----LD~aLlRpGR~---d~~I~~~~p~~ 402 (490)
.. +..+|+|||.+ +. ++.++.. |+ ...|.|.-++.
T Consensus 209 ~~---~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 209 RK---GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred HC---CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 32 24588899865 22 4666666 63 44567766664
No 164
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=1.2e-09 Score=119.59 Aligned_cols=203 Identities=22% Similarity=0.249 Sum_probs=120.6
Q ss_pred cceecccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEE-E
Q 011254 206 VWQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD-L 284 (490)
Q Consensus 206 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-l 284 (490)
.|. ....|.++++|+++++..+.+...+... .++....+.++|+||||||||++++++|+.++..++. .
T Consensus 73 pW~--eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~ 142 (637)
T TIGR00602 73 PWV--EKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS 142 (637)
T ss_pred chH--HHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh
Confidence 564 3578999999999998888766555421 1223344569999999999999999999999876543 1
Q ss_pred ecc--------------------cc-CChHHHHHHHHhc------------cCCeEEEEeccchhhhhhhhHhhhhhccc
Q 011254 285 ELT--------------------NL-RGNMELRNLLIAT------------ENKSILVVEDIDCSIELQDRFAKAKATNA 331 (490)
Q Consensus 285 ~~s--------------------~~-~~~~~l~~l~~~~------------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~ 331 (490)
+.. .+ .....+..++..+ .++.||+|||+|.++. +
T Consensus 143 npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~---r--------- 210 (637)
T TIGR00602 143 NPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY---R--------- 210 (637)
T ss_pred hhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch---h---------
Confidence 110 00 1223445555433 2467999999997753 1
Q ss_pred ccccccccccccCCchhhHHHHHHH--HhcccccCCCCcEEEEEecC-CCC--------------CCCccccCCCceeeE
Q 011254 332 MDLNVIQPVMNLNQVPQVTLSGMLN--FIDGLWSSCGDERIIIFTTN-HKD--------------RLDPAFLRPGRMDVH 394 (490)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~ls~LL~--~idgl~s~~~~~~iiI~TTN-~~~--------------~LD~aLlRpGR~d~~ 394 (490)
....+..+|. ..+ . + .+.||++++ .+. .|.++++...|+ .+
T Consensus 211 ---------------~~~~lq~lLr~~~~e----~-~-~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~ 268 (637)
T TIGR00602 211 ---------------DTRALHEILRWKYVS----I-G-RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SN 268 (637)
T ss_pred ---------------hHHHHHHHHHHHhhc----C-C-CceEEEEecCCccccccccccccchhcccCHhHhcccce-eE
Confidence 0112333444 222 1 1 123333333 221 133677743355 47
Q ss_pred EEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhccCC-CHHHHHHHHH-cCCCHHHHHHHHHHHH
Q 011254 395 IHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKAKV-TPADVAEQLM-RNEVPEIALRELIQFL 459 (490)
Q Consensus 395 I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~~~-tpa~i~~~l~-~~~~~~~al~~l~~~l 459 (490)
|.|...+....++.++..+..+..... ....+ ++..+..++. ..+|...|+..|.-++
T Consensus 269 I~FnPia~t~l~K~L~rIl~~E~~~~~-------~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 269 ISFNPIAPTIMKKFLNRIVTIEAKKNG-------EKIKVPKKTSVELLCQGCSGDIRSAINSLQFSS 328 (637)
T ss_pred EEeCCCCHHHHHHHHHHHHHhhhhccc-------cccccCCHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 999999999988888877754322111 11112 3344444333 4679999998887654
No 165
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.10 E-value=1.7e-10 Score=106.88 Aligned_cols=108 Identities=22% Similarity=0.377 Sum_probs=74.7
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccC----cEEEEeccccCC----hHHHHHHHHhcc------CCeEEEEeccchhhh
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNF----DVYDLELTNLRG----NMELRNLLIATE------NKSILVVEDIDCSIE 318 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~----~~~~l~~s~~~~----~~~l~~l~~~~~------~~sIl~iDdiD~l~~ 318 (490)
...+||.||+|||||.||+++|..+.. +++.++++.+.. ...+..++...+ ...||+|||||....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 345899999999999999999999996 999999999977 455555555443 346999999998854
Q ss_pred hhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc--CCC-----CcEEEEEecCCCC
Q 011254 319 LQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS--SCG-----DERIIIFTTNHKD 379 (490)
Q Consensus 319 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s--~~~-----~~~iiI~TTN~~~ 379 (490)
. .... .+.......+.||..+|+-.- ..+ .+.|+|+|+|--.
T Consensus 83 ~----~~~~---------------~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 83 S----NSGG---------------ADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp T----TTTC---------------SHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred c----cccc---------------chhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 1 0000 011123456778888874211 111 3579999999644
No 166
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.09 E-value=3.5e-10 Score=106.76 Aligned_cols=45 Identities=31% Similarity=0.536 Sum_probs=36.1
Q ss_pred ccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 218 FDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 218 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
|.+|.|++..|+.+.-... | ..++||+||||||||++|+++..-+
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 8899999999998855443 3 3689999999999999999999876
No 167
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.07 E-value=5.6e-10 Score=97.08 Aligned_cols=66 Identities=27% Similarity=0.500 Sum_probs=49.1
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCc---EEEEeccccC--------------------ChHHHHHHHHhcc--CCeE
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLELTNLR--------------------GNMELRNLLIATE--NKSI 307 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~---~~~l~~s~~~--------------------~~~~l~~l~~~~~--~~sI 307 (490)
+..++|+||||||||++++++|+.+... ++.+++.... .......++..+. .+.|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3578999999999999999999999875 7777766531 1223444444443 3499
Q ss_pred EEEeccchhhh
Q 011254 308 LVVEDIDCSIE 318 (490)
Q Consensus 308 l~iDdiD~l~~ 318 (490)
|+|||++.+..
T Consensus 82 iiiDei~~~~~ 92 (148)
T smart00382 82 LILDEITSLLD 92 (148)
T ss_pred EEEECCcccCC
Confidence 99999998854
No 168
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=1.2e-08 Score=104.40 Aligned_cols=124 Identities=16% Similarity=0.166 Sum_probs=91.4
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhccCc-------------------------EEEEecc------------------
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNFD-------------------------VYDLELT------------------ 287 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-------------------------~~~l~~s------------------ 287 (490)
..+.+|||+||+|+||+++|+++|+.+.+. ++.+...
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 557799999999999999999999987431 2223211
Q ss_pred -----------ccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhH
Q 011254 288 -----------NLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVT 350 (490)
Q Consensus 288 -----------~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (490)
...+-++++.+..... ..-|++||++|.+- ...
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------------------------~~A 148 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------------------------VAA 148 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------------------------HHH
Confidence 0112345666655543 23588888888762 335
Q ss_pred HHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011254 351 LSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASS 411 (490)
Q Consensus 351 ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~ 411 (490)
-+.||..++.. +..+++|++|++++.|.|.+++ |+ .+|.|+.|+.++....+..
T Consensus 149 aNaLLKtLEEP----p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 149 ANALLKTLEEP----PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred HHHHHHHhcCC----CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHH
Confidence 57899999863 4568999999999999999998 87 7899999999888776664
No 169
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.05 E-value=1.5e-10 Score=100.77 Aligned_cols=104 Identities=26% Similarity=0.307 Sum_probs=60.3
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHH--HHh-------cc---CCeEEEEeccchhhhhhhhH
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNL--LIA-------TE---NKSILVVEDIDCSIELQDRF 323 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l--~~~-------~~---~~sIl~iDdiD~l~~~~~r~ 323 (490)
+||.|+||+|||++|+++|..++.++.++.++.-...+++.-. +.. .. -..|+++|||...-
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrap------ 75 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAP------ 75 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-------
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCC------
Confidence 7999999999999999999999999999988632222222110 000 01 13699999996542
Q ss_pred hhhhhcccccccccccccccCCchhhHHHHHHHHhc-------ccccCCCCcEEEEEecCCCC-----CCCccccCCCce
Q 011254 324 AKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFID-------GLWSSCGDERIIIFTTNHKD-----RLDPAFLRPGRM 391 (490)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~id-------gl~s~~~~~~iiI~TTN~~~-----~LD~aLlRpGR~ 391 (490)
..+.|.||..|. |..-..++..+||+|-|..+ .|+.|++. ||
T Consensus 76 ------------------------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 76 ------------------------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ------------------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ------------------------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 456777888774 32233445688999999877 67888887 77
No 170
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.04 E-value=5.8e-09 Score=106.38 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=51.7
Q ss_pred CCcc-ccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------cEEEEec
Q 011254 216 ATFD-TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-------DVYDLEL 286 (490)
Q Consensus 216 ~~f~-~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-------~~~~l~~ 286 (490)
.-|+ ++.|.++.++++++.+..... . +...++.++|+|||||||||||++||+.++. ++|.+..
T Consensus 47 ~~F~~~~~G~~~~i~~lv~~l~~~a~------g-~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 47 RFFDHDFFGMEEAIERFVNYFKSAAQ------G-LEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cccchhccCcHHHHHHHHHHHHHHHh------c-CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 3477 899999999999887765432 1 1234578999999999999999999999976 8998877
No 171
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.04 E-value=2.5e-09 Score=108.41 Aligned_cols=118 Identities=22% Similarity=0.330 Sum_probs=88.1
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhcc------------------------CcEEEEeccccCC----hHHHHHHHHhcc-
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLN------------------------FDVYDLELTNLRG----NMELRNLLIATE- 303 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~------------------------~~~~~l~~s~~~~----~~~l~~l~~~~~- 303 (490)
+..+||+||||||||++|.++|+.+. .+++.++.++... ...++++.....
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~ 103 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSE 103 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhcc
Confidence 34799999999999999999999987 6888998888754 345555555432
Q ss_pred -----CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCC
Q 011254 304 -----NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHK 378 (490)
Q Consensus 304 -----~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~ 378 (490)
..-|++|||+|.+-. ...+.|+..+.-. .....+|++||.+
T Consensus 104 ~~~~~~~kviiidead~mt~------------------------------~A~nallk~lEep----~~~~~~il~~n~~ 149 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE------------------------------DAANALLKTLEEP----PKNTRFILITNDP 149 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH------------------------------HHHHHHHHHhccC----CCCeEEEEEcCCh
Confidence 357999999998842 2345567776653 3457899999999
Q ss_pred CCCCccccCCCceeeEEEeCCCCHHHHHH
Q 011254 379 DRLDPAFLRPGRMDVHIHMSYCTSCGFKM 407 (490)
Q Consensus 379 ~~LD~aLlRpGR~d~~I~~~~p~~~~r~~ 407 (490)
..+-|.+.. |. ..++|+.|+...+..
T Consensus 150 ~~il~tI~S--Rc-~~i~f~~~~~~~~i~ 175 (325)
T COG0470 150 SKILPTIRS--RC-QRIRFKPPSRLEAIA 175 (325)
T ss_pred hhccchhhh--cc-eeeecCCchHHHHHH
Confidence 999998887 65 668888765554433
No 172
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.04 E-value=4.7e-09 Score=96.48 Aligned_cols=113 Identities=18% Similarity=0.265 Sum_probs=82.1
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhcc-----------------------CcEEEEecccc---CChHHHHHHHHhcc-
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLN-----------------------FDVYDLELTNL---RGNMELRNLLIATE- 303 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~-----------------------~~~~~l~~s~~---~~~~~l~~l~~~~~- 303 (490)
..+..|||+||+|+||+++|.++|+.+- .+++.++.... ...++++.+.....
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~ 96 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSL 96 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTS
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHH
Confidence 4567899999999999999999998762 35666665543 35577887777653
Q ss_pred -----CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCC
Q 011254 304 -----NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHK 378 (490)
Q Consensus 304 -----~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~ 378 (490)
..-|++|||+|.+- ....+.||..|+.. +...++|++|+.+
T Consensus 97 ~~~~~~~KviiI~~ad~l~------------------------------~~a~NaLLK~LEep----p~~~~fiL~t~~~ 142 (162)
T PF13177_consen 97 SPSEGKYKVIIIDEADKLT------------------------------EEAQNALLKTLEEP----PENTYFILITNNP 142 (162)
T ss_dssp S-TTSSSEEEEEETGGGS-------------------------------HHHHHHHHHHHHST----TTTEEEEEEES-G
T ss_pred HHhcCCceEEEeehHhhhh------------------------------HHHHHHHHHHhcCC----CCCEEEEEEECCh
Confidence 35699999999873 34567899999875 3458999999999
Q ss_pred CCCCccccCCCceeeEEEeCCC
Q 011254 379 DRLDPAFLRPGRMDVHIHMSYC 400 (490)
Q Consensus 379 ~~LD~aLlRpGR~d~~I~~~~p 400 (490)
+.|-|.++. |. ..|.|+..
T Consensus 143 ~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 143 SKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp GGS-HHHHT--TS-EEEEE---
T ss_pred HHChHHHHh--hc-eEEecCCC
Confidence 999999998 76 66777653
No 173
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.03 E-value=8.6e-10 Score=122.07 Aligned_cols=152 Identities=19% Similarity=0.264 Sum_probs=101.3
Q ss_pred CccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-------------------
Q 011254 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL------------------- 277 (490)
Q Consensus 217 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l------------------- 277 (490)
.|..|+|++.+|..+.-.+. . +--.|+||.||||||||++|++|++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av----~---------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV----D---------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhh----C---------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 47899999988877654333 1 112479999999999999999999988
Q ss_pred ----------------cCcEEEEecccc----CChHHHHHHHHh-----------ccCCeEEEEeccchhhhhhhhHhhh
Q 011254 278 ----------------NFDVYDLELTNL----RGNMELRNLLIA-----------TENKSILVVEDIDCSIELQDRFAKA 326 (490)
Q Consensus 278 ----------------~~~~~~l~~s~~----~~~~~l~~l~~~-----------~~~~sIl~iDdiD~l~~~~~r~~~~ 326 (490)
..+++.+.++.. .+..++...+.. .....|||||||+.+-
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--------- 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--------- 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC---------
Confidence 245555554422 122233333321 1245799999999773
Q ss_pred hhcccccccccccccccCCchhhHHHHHHHHhc-cc--------ccCCCCcEEEEEecCCC-CCCCccccCCCceeeEEE
Q 011254 327 KATNAMDLNVIQPVMNLNQVPQVTLSGMLNFID-GL--------WSSCGDERIIIFTTNHK-DRLDPAFLRPGRMDVHIH 396 (490)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~id-gl--------~s~~~~~~iiI~TTN~~-~~LD~aLlRpGR~d~~I~ 396 (490)
....+.||..|+ |. .......+++|+|+|.. ..|.++|+. ||+.+|.
T Consensus 140 ---------------------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~ 196 (633)
T TIGR02442 140 ---------------------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVD 196 (633)
T ss_pred ---------------------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEE
Confidence 234566777775 21 11111347888999964 368899999 9999999
Q ss_pred eCCCC-HHHHHHHHHHhh
Q 011254 397 MSYCT-SCGFKMLASSYL 413 (490)
Q Consensus 397 ~~~p~-~~~r~~L~~~~l 413 (490)
++++. .+.+.+++...+
T Consensus 197 v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 197 VAAPRDPEERVEIIRRRL 214 (633)
T ss_pred ccCCCchHHHHHHHHHHH
Confidence 99886 466677776543
No 174
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.03 E-value=7.7e-10 Score=111.79 Aligned_cols=97 Identities=24% Similarity=0.364 Sum_probs=68.6
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccC-
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLR- 290 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~- 290 (490)
..+|+++......+..+......|+.. |.. .+..+|++||||||||||+|+.|||+++ |+.+..+..+++.
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~---~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEA---YPP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHH---hhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 367777776654555555555555542 221 2356899999999999999999999998 7888877766541
Q ss_pred ------ChHHHHHHHHhccCCeEEEEeccchh
Q 011254 291 ------GNMELRNLLIATENKSILVVEDIDCS 316 (490)
Q Consensus 291 ------~~~~l~~l~~~~~~~sIl~iDdiD~l 316 (490)
....+.+.+....+..+|+|||+...
T Consensus 198 ~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e 229 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVKEAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHHhcCcHHHHHHHhcCCCEEEEecCCCc
Confidence 12235566667778899999999754
No 175
>PRK12377 putative replication protein; Provisional
Probab=99.03 E-value=1.5e-09 Score=106.25 Aligned_cols=95 Identities=19% Similarity=0.319 Sum_probs=62.8
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCC
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRG 291 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~ 291 (490)
..+|++.....+..+.+...+..+... |.. ...+++|+||||||||+|+.|||+++ |..+..+...++..
T Consensus 70 ~~tFdnf~~~~~~~~~a~~~a~~~a~~---~~~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQAKSIADE---LMT----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred cCCcCCcccCChhHHHHHHHHHHHHHH---HHh----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 346887765443333344444444332 111 23689999999999999999999998 66777777665411
Q ss_pred --------hHHHHHHHHhccCCeEEEEeccchh
Q 011254 292 --------NMELRNLLIATENKSILVVEDIDCS 316 (490)
Q Consensus 292 --------~~~l~~l~~~~~~~sIl~iDdiD~l 316 (490)
......++....+..+|+|||+...
T Consensus 143 ~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 143 RLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 1123456666778899999999754
No 176
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.01 E-value=3.8e-09 Score=111.33 Aligned_cols=128 Identities=17% Similarity=0.257 Sum_probs=80.8
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccC--cEEEEecc-----ccCChHHHHHH-----HHh-----ccCCeEEEEeccch
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELT-----NLRGNMELRNL-----LIA-----TENKSILVVEDIDC 315 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~--~~~~l~~s-----~~~~~~~l~~l-----~~~-----~~~~sIl~iDdiD~ 315 (490)
...+||+||||||||++|++||...+. ++..+.+. ++.+...+... |.. .+...+||+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 456999999999999999999997653 23322221 22111111111 111 11234999999964
Q ss_pred hhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHh-cccccCCC-----CcEEEEEecCCCC---CCCcccc
Q 011254 316 SIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFI-DGLWSSCG-----DERIIIFTTNHKD---RLDPAFL 386 (490)
Q Consensus 316 l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~i-dgl~s~~~-----~~~iiI~TTN~~~---~LD~aLl 386 (490)
+ +..+.+.||..| ++.....+ ..+++|+|||... ...+|+.
T Consensus 119 a------------------------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~ 168 (498)
T PRK13531 119 A------------------------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALY 168 (498)
T ss_pred C------------------------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhH
Confidence 4 245677888888 33322211 2367788888532 2335899
Q ss_pred CCCceeeEEEeCCCC-HHHHHHHHHHh
Q 011254 387 RPGRMDVHIHMSYCT-SCGFKMLASSY 412 (490)
Q Consensus 387 RpGR~d~~I~~~~p~-~~~r~~L~~~~ 412 (490)
. ||-++|.+|+|+ .+.++.|+...
T Consensus 169 D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 169 D--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred h--hEEEEEECCCCCchHHHHHHHHcc
Confidence 8 999999999997 56778887754
No 177
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.00 E-value=2.8e-09 Score=115.23 Aligned_cols=128 Identities=16% Similarity=0.232 Sum_probs=83.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEE----eccccCC---------hHHHHHHHHhccCCeEEEEeccchhhhhhh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL----ELTNLRG---------NMELRNLLIATENKSILVVEDIDCSIELQD 321 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l----~~s~~~~---------~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~ 321 (490)
.+||+|+||||||++++++++......+.. ++..+.. ...++.-........+++|||+|.+-.
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~--- 314 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDD--- 314 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCCH---
Confidence 499999999999999999999876554432 1111110 000111111123578999999998732
Q ss_pred hHhhhhhcccccccccccccccCCchhhHHHHHHHHhcc---------cccCCCCcEEEEEecCCCC-------------
Q 011254 322 RFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG---------LWSSCGDERIIIFTTNHKD------------- 379 (490)
Q Consensus 322 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg---------l~s~~~~~~iiI~TTN~~~------------- 379 (490)
...+.|+..|+. ....-....-||+|+|..+
T Consensus 315 ---------------------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~ 367 (509)
T smart00350 315 ---------------------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENI 367 (509)
T ss_pred ---------------------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhcc
Confidence 223445555532 1111123467899999764
Q ss_pred CCCccccCCCceeeEEEe-CCCCHHHHHHHHHHhhC
Q 011254 380 RLDPAFLRPGRMDVHIHM-SYCTSCGFKMLASSYLG 414 (490)
Q Consensus 380 ~LD~aLlRpGR~d~~I~~-~~p~~~~r~~L~~~~l~ 414 (490)
.|+++++. |||..+.+ ++|+.+...+|+++.+.
T Consensus 368 ~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 368 DLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred CCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 58999999 99987555 89999999999987654
No 178
>PRK08181 transposase; Validated
Probab=98.99 E-value=1.2e-09 Score=108.24 Aligned_cols=64 Identities=30% Similarity=0.508 Sum_probs=49.7
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccC-------ChHHHHHHHHhccCCeEEEEeccchh
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLR-------GNMELRNLLIATENKSILVVEDIDCS 316 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~-------~~~~l~~l~~~~~~~sIl~iDdiD~l 316 (490)
+.+++|+||||||||+|+.|+|+++ |+.++.+...++. .+..+.+.+....+..+|+|||++..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYV 179 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccc
Confidence 4689999999999999999999865 7778777766542 12234556666778899999999865
No 179
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.3e-08 Score=100.35 Aligned_cols=66 Identities=32% Similarity=0.444 Sum_probs=54.2
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCC--------hHHHHHHHHhc------cCCeEEEEeccchhhh
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRG--------NMELRNLLIAT------ENKSILVVEDIDCSIE 318 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~--------~~~l~~l~~~~------~~~sIl~iDdiD~l~~ 318 (490)
+..+||.||.|||||.||+.+|..++.||...+.+.+.. +.-+.+++..+ .++.||+|||||.+..
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 356999999999999999999999999999999888721 23456666654 2689999999999853
No 180
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.93 E-value=3.4e-08 Score=98.87 Aligned_cols=64 Identities=27% Similarity=0.367 Sum_probs=46.7
Q ss_pred ccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc--CcEEEEecccc
Q 011254 218 FDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN--FDVYDLELTNL 289 (490)
Q Consensus 218 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~--~~~~~l~~s~~ 289 (490)
=|-++|+.+.++..--.++ .-+-|+--.||+|+.||||||||.||-+||++|| .||..++.+++
T Consensus 38 ~dG~VGQ~~AReAaGvIv~--------mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVK--------MIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred CCcccchHHHHHhhhHHHH--------HHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 3678898888775432222 1233566689999999999999999999999996 45555555554
No 181
>PRK04132 replication factor C small subunit; Provisional
Probab=98.91 E-value=1.9e-08 Score=113.01 Aligned_cols=124 Identities=11% Similarity=0.110 Sum_probs=98.2
Q ss_pred eeeeC--CCCCcHHHHHHHHHHhc-----cCcEEEEeccccCChHHHHHHHHhcc--------CCeEEEEeccchhhhhh
Q 011254 256 YLLYG--PPGTGKSSLIAAMANYL-----NFDVYDLELTNLRGNMELRNLLIATE--------NKSILVVEDIDCSIELQ 320 (490)
Q Consensus 256 ~LL~G--PpGtGKT~la~aiA~~l-----~~~~~~l~~s~~~~~~~l~~l~~~~~--------~~sIl~iDdiD~l~~~~ 320 (490)
.+..| |++.||||+|+|+|+++ +.+++.++.++..+.+.++.++.... +.-|++|||+|.+-.
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~-- 644 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-- 644 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCH--
Confidence 35568 99999999999999998 56899999999777788888776532 136999999998831
Q ss_pred hhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCC
Q 011254 321 DRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYC 400 (490)
Q Consensus 321 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p 400 (490)
...+.||..|+... ....+|++||.+..+.++++. |+ ..+.|+.|
T Consensus 645 ----------------------------~AQnALLk~lEep~----~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~l 689 (846)
T PRK04132 645 ----------------------------DAQQALRRTMEMFS----SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPL 689 (846)
T ss_pred ----------------------------HHHHHHHHHhhCCC----CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCC
Confidence 23456888888642 347899999999999999998 75 78999999
Q ss_pred CHHHHHHHHHHhhCCC
Q 011254 401 TSCGFKMLASSYLGIT 416 (490)
Q Consensus 401 ~~~~r~~L~~~~l~~~ 416 (490)
+.++....+...+..+
T Consensus 690 s~~~i~~~L~~I~~~E 705 (846)
T PRK04132 690 RDEDIAKRLRYIAENE 705 (846)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9988877777665443
No 182
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.90 E-value=3.3e-08 Score=106.38 Aligned_cols=210 Identities=20% Similarity=0.272 Sum_probs=121.7
Q ss_pred CCcceecccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEE
Q 011254 204 GDVWQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (490)
Q Consensus 204 ~~~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 283 (490)
...|.. -..|.+.++|+.++...+++...+...+ .+....+-+||+||||||||++++++|+++|+.+..
T Consensus 6 ~~~W~~--ky~P~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 6 SEPWVE--KYAPKTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred cCccch--hcCCCCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 456753 5679999999999877777766665432 234455678899999999999999999999998876
Q ss_pred Ee-cccc----------CC-----------hHHHHHH-HHhc-------------cCCeEEEEeccchhhhhhhhHhhhh
Q 011254 284 LE-LTNL----------RG-----------NMELRNL-LIAT-------------ENKSILVVEDIDCSIELQDRFAKAK 327 (490)
Q Consensus 284 l~-~s~~----------~~-----------~~~l~~l-~~~~-------------~~~sIl~iDdiD~l~~~~~r~~~~~ 327 (490)
.. ...+ .+ ...+..+ +... .++.||+|||+-..+.
T Consensus 76 w~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~--------- 146 (519)
T PF03215_consen 76 WINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH--------- 146 (519)
T ss_pred ecCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc---------
Confidence 42 2221 00 0112222 1110 2467999999865432
Q ss_pred hcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEe-c------CCCC--------CCCccccCCCcee
Q 011254 328 ATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFT-T------NHKD--------RLDPAFLRPGRMD 392 (490)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~T-T------N~~~--------~LD~aLlRpGR~d 392 (490)
.........|...+..- .+ ..+|||.| | |... .+++.++.-.++
T Consensus 147 -----------------~~~~~f~~~L~~~l~~~--~~-~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i- 205 (519)
T PF03215_consen 147 -----------------RDTSRFREALRQYLRSS--RC-LPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI- 205 (519)
T ss_pred -----------------hhHHHHHHHHHHHHHcC--CC-CCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-
Confidence 11122222333344321 11 15777777 1 1111 345666654445
Q ss_pred eEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhccC-CCHHHHHHHHHc--CCCHHHHHHHHHHHHH
Q 011254 393 VHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKAK-VTPADVAEQLMR--NEVPEIALRELIQFLE 460 (490)
Q Consensus 393 ~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~~-~tpa~i~~~l~~--~~~~~~al~~l~~~l~ 460 (490)
.+|.|........++-+++.+..+ ...+..... -.+.++.+.+.. .+|...|+..|.-+..
T Consensus 206 ~~I~FNpIa~T~mkKaL~rI~~~E-------~~~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 206 TRIKFNPIAPTFMKKALKRILKKE-------ARSSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHH-------hhhhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 579998888877777676665322 111111111 122443444432 4888899988887765
No 183
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.90 E-value=3.9e-08 Score=99.74 Aligned_cols=65 Identities=26% Similarity=0.363 Sum_probs=45.6
Q ss_pred CccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc--CcEEEEecccc
Q 011254 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN--FDVYDLELTNL 289 (490)
Q Consensus 217 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~--~~~~~l~~s~~ 289 (490)
..+-++|+.+.++..--.++. + +-|+--.|++||.||||||||.||-+||++|| .||..++.+++
T Consensus 22 ~~~GlVGQ~~AReAagiiv~m-I-------k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDM-I-------KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHH-H-------HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred ccccccChHHHHHHHHHHHHH-H-------hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 357899999998876544432 1 23445578999999999999999999999996 67777666665
No 184
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=1.7e-07 Score=95.25 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=93.2
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhccC------------------------cEEEEecc--ccCChHHHHHHHHhcc-
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNF------------------------DVYDLELT--NLRGNMELRNLLIATE- 303 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------------------~~~~l~~s--~~~~~~~l~~l~~~~~- 303 (490)
..+.+|||+||+|+||+++|+++|+.+.+ |++.+... ...+-+++|++.....
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 34578999999999999999999998732 34444321 1124567777655543
Q ss_pred -----CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCC
Q 011254 304 -----NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHK 378 (490)
Q Consensus 304 -----~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~ 378 (490)
..-|++||++|.+- ...-+.||..++.. +...++|++|+++
T Consensus 102 ~~~~g~~KV~iI~~a~~m~------------------------------~~AaNaLLKtLEEP----p~~~~fiL~t~~~ 147 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLT------------------------------EAAANALLKTLEEP----RPNTYFLLQADLS 147 (325)
T ss_pred ccccCCceEEEEechhhhC------------------------------HHHHHHHHHHhcCC----CCCeEEEEEECCh
Confidence 34599999999773 23457799998874 4558999999999
Q ss_pred CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011254 379 DRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSY 412 (490)
Q Consensus 379 ~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~ 412 (490)
+.|.|.++. |. .++.|+.|+.++....+...
T Consensus 148 ~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 148 AALLPTIYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred HhCchHHHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 999999998 76 67899999998877666543
No 185
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.2e-08 Score=104.38 Aligned_cols=134 Identities=22% Similarity=0.300 Sum_probs=92.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEec-ccc------CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL-TNL------RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFA 324 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~-s~~------~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~ 324 (490)
.++||+||||+|||.||+.||...++||+.+-- .++ .....+++.|..+- .-+||++|||+.+++--.-
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI-- 616 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI-- 616 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc--
Confidence 569999999999999999999999999997643 233 12346788888874 4599999999999752110
Q ss_pred hhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCC-ccccCCCceeeEEEeCCCCH-
Q 011254 325 KAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLD-PAFLRPGRMDVHIHMSYCTS- 402 (490)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD-~aLlRpGR~d~~I~~~~p~~- 402 (490)
....+..++-.|+..+..... .|...+|++||...+-|. -.++. .|+..|++|..+.
T Consensus 617 ------------------GPRfSN~vlQaL~VllK~~pp-kg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 617 ------------------GPRFSNLVLQALLVLLKKQPP-KGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTG 675 (744)
T ss_pred ------------------CchhhHHHHHHHHHHhccCCC-CCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCch
Confidence 133456666677777766543 244556666776655442 24445 7888999988776
Q ss_pred HHHHHHHH
Q 011254 403 CGFKMLAS 410 (490)
Q Consensus 403 ~~r~~L~~ 410 (490)
++...++.
T Consensus 676 ~~~~~vl~ 683 (744)
T KOG0741|consen 676 EQLLEVLE 683 (744)
T ss_pred HHHHHHHH
Confidence 45555444
No 186
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=1.9e-07 Score=94.78 Aligned_cols=124 Identities=15% Similarity=0.163 Sum_probs=93.3
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhcc-----------------------CcEEEEeccc---cCChHHHHHHHHhcc-
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLN-----------------------FDVYDLELTN---LRGNMELRNLLIATE- 303 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~-----------------------~~~~~l~~s~---~~~~~~l~~l~~~~~- 303 (490)
..+.+|||+||.|+||+++|.++|..+- -|++.+.... ..+-+++|.+.....
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQE 102 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhh
Confidence 4467899999999999999999999772 2455554421 124456666554432
Q ss_pred -----CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCC
Q 011254 304 -----NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHK 378 (490)
Q Consensus 304 -----~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~ 378 (490)
..-|++||++|.+- ...-+.||..++.. +.+.++|++|+++
T Consensus 103 ~~~~~~~kV~iI~~ae~m~------------------------------~~AaNaLLKtLEEP----p~~t~fiL~t~~~ 148 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAMN------------------------------ESASNALLKTLEEP----APNCLFLLVTHNQ 148 (319)
T ss_pred CcccCCceEEEecchhhhC------------------------------HHHHHHHHHHhcCC----CCCeEEEEEECCh
Confidence 34699999999873 23457799999874 4558999999999
Q ss_pred CCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011254 379 DRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASS 411 (490)
Q Consensus 379 ~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~ 411 (490)
+.|-|.++. |. .++.|+.|+.++....+..
T Consensus 149 ~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 149 KRLLPTIVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred hhChHHHHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 999999998 76 6799999999887766653
No 187
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.88 E-value=1.4e-08 Score=96.28 Aligned_cols=190 Identities=17% Similarity=0.203 Sum_probs=111.1
Q ss_pred cccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-c----CcEEEE
Q 011254 210 VNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-N----FDVYDL 284 (490)
Q Consensus 210 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~----~~~~~l 284 (490)
|.-..|.-+.+++|.++..+.+.-. .+-|-- ..++|.||||||||+-+.++|++| | -.+..+
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~vi-----------a~~gnm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVI-----------AKEGNM--PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHH-----------HHcCCC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 3467889999999998887666322 222222 258999999999999999999987 3 345677
Q ss_pred eccccCChHHHHHH---HHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHH
Q 011254 285 ELTNLRGNMELRNL---LIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGML 355 (490)
Q Consensus 285 ~~s~~~~~~~l~~l---~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 355 (490)
+.++-.+-+-+|.- |.... +.-||++||+|.+-. .. +. .|-
T Consensus 85 NASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~----gA-----------------------QQ---AlR 134 (333)
T KOG0991|consen 85 NASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA----GA-----------------------QQ---ALR 134 (333)
T ss_pred cCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh----HH-----------------------HH---HHH
Confidence 87776655555543 33321 346999999998732 11 11 122
Q ss_pred HHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhccCCCH
Q 011254 356 NFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKAKVTP 435 (490)
Q Consensus 356 ~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~~~tp 435 (490)
..|+-..+. .-+.+++|..+++=+.+.. |+. .+.++..+..+...-+..... .++..+|+
T Consensus 135 RtMEiyS~t----tRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k-------------~Ekv~yt~ 194 (333)
T KOG0991|consen 135 RTMEIYSNT----TRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAK-------------AEKVNYTD 194 (333)
T ss_pred HHHHHHccc----chhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHH-------------HhCCCCCc
Confidence 233322222 2367789988887655554 442 344555555543222221221 12344555
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHH
Q 011254 436 ADVAEQLM-RNEVPEIALRELIQFLEIK 462 (490)
Q Consensus 436 a~i~~~l~-~~~~~~~al~~l~~~l~~~ 462 (490)
.-+..++. ..+|...||..|..-+...
T Consensus 195 dgLeaiifta~GDMRQalNnLQst~~g~ 222 (333)
T KOG0991|consen 195 DGLEAIIFTAQGDMRQALNNLQSTVNGF 222 (333)
T ss_pred chHHHhhhhccchHHHHHHHHHHHhccc
Confidence 55544443 3356666666666554433
No 188
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.85 E-value=1.5e-08 Score=111.13 Aligned_cols=128 Identities=19% Similarity=0.213 Sum_probs=88.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccC--cEEEEecccc----CChHHHHHHHH-----------hccCCeEEEEeccchh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELTNL----RGNMELRNLLI-----------ATENKSILVVEDIDCS 316 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~--~~~~l~~s~~----~~~~~l~~l~~-----------~~~~~sIl~iDdiD~l 316 (490)
.|+||.|+||||||+++++++..+.. +|..+.+... .+.-.+...+. ...+..+||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 57999999999999999999998764 4777764221 11112222111 1134579999999877
Q ss_pred hhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhc-c--------cccCCCCcEEEEEecCCCC---CCCcc
Q 011254 317 IELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFID-G--------LWSSCGDERIIIFTTNHKD---RLDPA 384 (490)
Q Consensus 317 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~id-g--------l~s~~~~~~iiI~TTN~~~---~LD~a 384 (490)
- ..+.+.||..|+ | ..........||+|+|..+ .|.++
T Consensus 97 ~------------------------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~ 146 (589)
T TIGR02031 97 D------------------------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDH 146 (589)
T ss_pred C------------------------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHH
Confidence 3 234566777775 2 1111123467889999875 79999
Q ss_pred ccCCCceeeEEEeCCC-CHHHHHHHHHHhh
Q 011254 385 FLRPGRMDVHIHMSYC-TSCGFKMLASSYL 413 (490)
Q Consensus 385 LlRpGR~d~~I~~~~p-~~~~r~~L~~~~l 413 (490)
|+. ||+.+|.+.++ +.++|.+|+++++
T Consensus 147 Lld--Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 147 LLD--RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred HHH--hccCeeecCCCCCHHHHHHHHHHHH
Confidence 999 99999999765 5566888888776
No 189
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=1.1e-07 Score=97.30 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=93.6
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhccC------------------------cEEEEecc---ccCChHHHHHHHHhcc
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNF------------------------DVYDLELT---NLRGNMELRNLLIATE 303 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------------------~~~~l~~s---~~~~~~~l~~l~~~~~ 303 (490)
..+.+|||+||+|+||+++|.++|..+-+ |++.+... ...+-+++|++.....
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 44678999999999999999999998732 34444332 1134567777666543
Q ss_pred ------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCC
Q 011254 304 ------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNH 377 (490)
Q Consensus 304 ------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~ 377 (490)
..-|++||++|.+- ...-+.||..++.. +...++|++|++
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~------------------------------~~AaNaLLKtLEEP----p~~t~fiL~t~~ 147 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT------------------------------DAAANALLKTLEEP----PENTWFFLACRE 147 (334)
T ss_pred hccccCCceEEEEcchHhhC------------------------------HHHHHHHHHHhcCC----CCCeEEEEEECC
Confidence 34699999999873 23457799999874 456899999999
Q ss_pred CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011254 378 KDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASS 411 (490)
Q Consensus 378 ~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~ 411 (490)
++.|.|.++. |. ..+.|+.|+.++....+..
T Consensus 148 ~~~lLpTIrS--RC-q~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 148 PARLLATLRS--RC-RLHYLAPPPEQYALTWLSR 178 (334)
T ss_pred hhhChHHHHh--cc-ccccCCCCCHHHHHHHHHH
Confidence 9999999998 77 4689999998887765543
No 190
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=1.6e-07 Score=95.22 Aligned_cols=124 Identities=15% Similarity=0.188 Sum_probs=89.7
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhccC---------------------cEEEEe--cccc-------CChHHHHHHHH
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNF---------------------DVYDLE--LTNL-------RGNMELRNLLI 300 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~---------------------~~~~l~--~s~~-------~~~~~l~~l~~ 300 (490)
..+.+|||+||+|+||+++|.++|+.+.+ |++.+. ...- ..-++++++..
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 45678999999999999999999987632 344442 1110 12445666655
Q ss_pred hcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEe
Q 011254 301 ATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFT 374 (490)
Q Consensus 301 ~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~T 374 (490)
.+. ..-|++||++|.+- ...-+.||..++.. +...++|++
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~------------------------------~~AaNaLLKtLEEP----p~~~~fiL~ 149 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN------------------------------RAACNALLKTLEEP----SPGRYLWLI 149 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC------------------------------HHHHHHHHHHhhCC----CCCCeEEEE
Confidence 443 23599999998772 23457799998874 345789999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011254 375 TNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASS 411 (490)
Q Consensus 375 TN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~ 411 (490)
|+.++.|.|.++. |+ .+|.|+.|+.++....+..
T Consensus 150 ~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 150 SAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred ECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHH
Confidence 9999999999998 86 6789999999877665553
No 191
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.82 E-value=6.1e-08 Score=100.49 Aligned_cols=176 Identities=15% Similarity=0.179 Sum_probs=105.0
Q ss_pred ccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc-----CcEEEEe
Q 011254 211 NLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FDVYDLE 285 (490)
Q Consensus 211 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-----~~~~~l~ 285 (490)
.+.+.-||++++..+.-.... .....+-.. .|. ...-++||||+|.|||+|++|++++.. ..++.+.
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~-aa~~~va~~------~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~ 150 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAY-AAAKAVAEN------PGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT 150 (408)
T ss_pred cCCCCCchhheeeCCchHHHH-HHHHHHHhc------cCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc
Confidence 455667999997666544332 222222221 122 235689999999999999999999873 3345554
Q ss_pred ccccCC-------hHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHh
Q 011254 286 LTNLRG-------NMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFI 358 (490)
Q Consensus 286 ~s~~~~-------~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~i 358 (490)
...+.. +..+.+.=... +-.+++||||+.+.+. ..+..+|.+.+
T Consensus 151 se~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk----------------------------~~~qeefFh~F 201 (408)
T COG0593 151 SEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGK----------------------------ERTQEEFFHTF 201 (408)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcCC----------------------------hhHHHHHHHHH
Confidence 333210 01111111112 4569999999988541 11123344444
Q ss_pred cccccCCCCcEEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHh
Q 011254 359 DGLWSSCGDERIIIFTTNHKDR---LDPAFLRPGRMD--VHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGL 427 (490)
Q Consensus 359 dgl~s~~~~~~iiI~TTN~~~~---LD~aLlRpGR~d--~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l 427 (490)
..+....+ .||+.+-..|.. ++|.|.. ||. ..+++..|+.+.|..++.......+..+.+++...
T Consensus 202 N~l~~~~k--qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~ 271 (408)
T COG0593 202 NALLENGK--QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEF 271 (408)
T ss_pred HHHHhcCC--EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 44433322 555555555554 4588887 765 56788999999999999987766666666555443
No 192
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.82 E-value=1.6e-08 Score=100.57 Aligned_cols=134 Identities=25% Similarity=0.429 Sum_probs=82.0
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCc---EEEEeccccCChHHHHHHHHhc-------------cCCeEEEEeccchh
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLELTNLRGNMELRNLLIAT-------------ENKSILVVEDIDCS 316 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~---~~~l~~s~~~~~~~l~~l~~~~-------------~~~sIl~iDdiD~l 316 (490)
++.+||+||+|||||++++.+-..+.-. +..++++...+...+++++... .++.|+||||+..-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 4689999999999999998877666433 3456666655555666555432 13579999999855
Q ss_pred hhhhhhHhhhhhcccccccccccccccCCchhhHHHHHH-HHhc--ccccCCC------CcEEEEEecCCCC---CCCcc
Q 011254 317 IELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGML-NFID--GLWSSCG------DERIIIFTTNHKD---RLDPA 384 (490)
Q Consensus 317 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL-~~id--gl~s~~~------~~~iiI~TTN~~~---~LD~a 384 (490)
.. + ........+|| ..|| |.+.... .++.+|+|+|... .+++.
T Consensus 113 ~~--d-----------------------~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R 167 (272)
T PF12775_consen 113 QP--D-----------------------KYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPR 167 (272)
T ss_dssp ----------------------------TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHH
T ss_pred CC--C-----------------------CCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChH
Confidence 32 1 11122223444 3333 5544322 3467888888643 47889
Q ss_pred ccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 385 FLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 385 LlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
|+| .| ..+.+++|+.+....|+..++.
T Consensus 168 ~~r--~f-~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 168 FLR--HF-NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp HHT--TE-EEEE----TCCHHHHHHHHHHH
T ss_pred Hhh--he-EEEEecCCChHHHHHHHHHHHh
Confidence 998 77 5789999999998887777664
No 193
>PRK06526 transposase; Provisional
Probab=98.81 E-value=5.9e-09 Score=102.69 Aligned_cols=64 Identities=22% Similarity=0.337 Sum_probs=47.0
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccC-------ChHHHHHHHHhccCCeEEEEeccchh
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLR-------GNMELRNLLIATENKSILVVEDIDCS 316 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~-------~~~~l~~l~~~~~~~sIl~iDdiD~l 316 (490)
+.+++|+||||||||+|+.+|+.++ |+.++.....++. ....+.+.+....+..+|+|||++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccC
Confidence 4689999999999999999999875 6666665554431 11233445555667889999999865
No 194
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.79 E-value=5.9e-08 Score=99.21 Aligned_cols=152 Identities=14% Similarity=0.206 Sum_probs=98.9
Q ss_pred ccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCChHH
Q 011254 218 FDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGNME 294 (490)
Q Consensus 218 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~ 294 (490)
|++++|....-+.+.+.+..... ....+||+|++||||+++|++|.... +.+++.++|..+.. ..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~-----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~~ 72 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NL 72 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-HH
Confidence 67888888888888887775532 24569999999999999999998665 46899999998743 33
Q ss_pred HHHHH-H-----------------hccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHH
Q 011254 295 LRNLL-I-----------------ATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLN 356 (490)
Q Consensus 295 l~~l~-~-----------------~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 356 (490)
+...+ . ....+..|||||||.+-. .....|++
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~------------------------------~~Q~~L~~ 122 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM------------------------------LVQEKLLR 122 (326)
T ss_pred HHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCH------------------------------HHHHHHHH
Confidence 33322 1 223467899999998832 12334555
Q ss_pred Hhccc-ccCCC------CcEEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHhh
Q 011254 357 FIDGL-WSSCG------DERIIIFTTNHK-------DRLDPAFLRPGRM-DVHIHMSYCTS--CGFKMLASSYL 413 (490)
Q Consensus 357 ~idgl-~s~~~------~~~iiI~TTN~~-------~~LD~aLlRpGR~-d~~I~~~~p~~--~~r~~L~~~~l 413 (490)
.++.- ....+ -++-||+||+.. ..+.+.|.. || ..+|++|.... ++...|+..|+
T Consensus 123 ~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl 194 (326)
T PRK11608 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFA 194 (326)
T ss_pred HHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHH
Confidence 55421 11111 135677777753 345566766 77 45677766544 34556776665
No 195
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.78 E-value=5.3e-09 Score=97.61 Aligned_cols=63 Identities=32% Similarity=0.593 Sum_probs=47.3
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecccc-------CChHHHHHHHHhccCCeEEEEeccch
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNL-------RGNMELRNLLIATENKSILVVEDIDC 315 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~-------~~~~~l~~l~~~~~~~sIl~iDdiD~ 315 (490)
+.|++|+||||||||+||.|||+++ |+.++.++.+++ .......+++....+..+|+|||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccce
Confidence 5789999999999999999999876 788888887766 12233455666677789999999964
No 196
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=5.2e-08 Score=99.36 Aligned_cols=123 Identities=11% Similarity=0.160 Sum_probs=89.1
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhcc-------------------------CcEEEEeccc----------cCChHHH
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLN-------------------------FDVYDLELTN----------LRGNMEL 295 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~-------------------------~~~~~l~~s~----------~~~~~~l 295 (490)
..+.+|||+||+|+|||++|+++|+.+. -+++.++... ..+-+++
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 4467899999999999999999999873 3455565421 1234667
Q ss_pred HHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcE
Q 011254 296 RNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDER 369 (490)
Q Consensus 296 ~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~ 369 (490)
|.+...+. ..-|++||++|.+- ....+.||..++... ...
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld------------------------------~~a~naLLk~LEep~----~~~ 144 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN------------------------------LQAANSLLKVLEEPP----PQV 144 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC------------------------------HHHHHHHHHHHHhCc----CCC
Confidence 77665543 34688999998772 233456777777652 236
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 011254 370 IIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLAS 410 (490)
Q Consensus 370 iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~ 410 (490)
.+|++|++++.+.|.+.+ |. .++.|+.|+.++....+.
T Consensus 145 ~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 145 VFLLVSHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred EEEEEeCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHH
Confidence 688899999999999887 65 779999999988665544
No 197
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.8e-07 Score=103.41 Aligned_cols=151 Identities=19% Similarity=0.241 Sum_probs=105.4
Q ss_pred CccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----------cCcEEEEec
Q 011254 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLEL 286 (490)
Q Consensus 217 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~l~~ 286 (490)
.+|-++|-++..+++++.|.+ .-+..-+|.|+||+|||.++..+|... +..++.+++
T Consensus 168 klDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 478889999888888887763 224556999999999999999999876 678999998
Q ss_pred cccC--------ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHH
Q 011254 287 TNLR--------GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLN 356 (490)
Q Consensus 287 s~~~--------~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 356 (490)
+.+. -+..|+.++.... .+.|||||||+.+.+.....+ . ..-.+.+|.
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G---------------------~-a~DAaNiLK 292 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG---------------------G-AMDAANLLK 292 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc---------------------c-ccchhhhhH
Confidence 8873 2567888887764 479999999999976221110 0 011122222
Q ss_pred HhcccccCCCCcEEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 011254 357 FIDGLWSSCGDERIIIFTTNHKD-----RLDPAFLRPGRMDVHIHMSYCTSCGFKMLAS 410 (490)
Q Consensus 357 ~idgl~s~~~~~~iiI~TTN~~~-----~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~ 410 (490)
-+= .. .+.-+|++|..-+ .=|+||-| || ..|.+..|+.++-..|++
T Consensus 293 PaL----AR-GeL~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILr 343 (786)
T COG0542 293 PAL----AR-GELRCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILR 343 (786)
T ss_pred HHH----hc-CCeEEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHH
Confidence 110 11 3455666555322 23899999 99 679999999999777776
No 198
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.77 E-value=6.2e-08 Score=105.61 Aligned_cols=156 Identities=17% Similarity=0.221 Sum_probs=100.6
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCC
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRG 291 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~ 291 (490)
..+|+.++|....-+++++.+..... ....+||+|++||||+++|++|.... +.+++.++|..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVAR-----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 35799999999988888888775432 24569999999999999999999875 57999999998743
Q ss_pred hHHHHH-HHH-----------------hccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHH
Q 011254 292 NMELRN-LLI-----------------ATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSG 353 (490)
Q Consensus 292 ~~~l~~-l~~-----------------~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 353 (490)
..+.. +|. ...++..|||||||.+-. .....
T Consensus 261 -~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~------------------------------~~Q~~ 309 (534)
T TIGR01817 261 -TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP------------------------------AFQAK 309 (534)
T ss_pred -HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH------------------------------HHHHH
Confidence 33332 221 123467999999998732 12344
Q ss_pred HHHHhcc-cccCCC------CcEEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCC--HHHHHHHHHHhhC
Q 011254 354 MLNFIDG-LWSSCG------DERIIIFTTNHK-------DRLDPAFLRPGRMD-VHIHMSYCT--SCGFKMLASSYLG 414 (490)
Q Consensus 354 LL~~idg-l~s~~~------~~~iiI~TTN~~-------~~LD~aLlRpGR~d-~~I~~~~p~--~~~r~~L~~~~l~ 414 (490)
|+..++. -....+ -.+-||+||+.. ..+.+.|.. |+. ..|++|... .+....|+..|+.
T Consensus 310 Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~ 385 (534)
T TIGR01817 310 LLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLE 385 (534)
T ss_pred HHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHH
Confidence 5666542 111111 125577777642 123333333 443 467777665 3556677777764
No 199
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.76 E-value=3.4e-08 Score=91.33 Aligned_cols=86 Identities=21% Similarity=0.196 Sum_probs=58.3
Q ss_pred cccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCChHHHHH
Q 011254 221 LAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGNMELRN 297 (490)
Q Consensus 221 l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l~~ 297 (490)
|+|....-+++++.+..... .+..+||+|++||||+.+|++|-+.. +.+|+.++|+.+..+.--..
T Consensus 1 liG~s~~m~~~~~~~~~~a~-----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS-----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT-----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC-----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 34555556666666654432 34679999999999999999999976 47999999998844333334
Q ss_pred HHHh-----------------ccCCeEEEEeccchhh
Q 011254 298 LLIA-----------------TENKSILVVEDIDCSI 317 (490)
Q Consensus 298 l~~~-----------------~~~~sIl~iDdiD~l~ 317 (490)
+|.. ..+..+|||||||.+.
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~ 106 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLP 106 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-
T ss_pred hhccccccccccccccCCceeeccceEEeecchhhhH
Confidence 4432 1256899999999884
No 200
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.76 E-value=9.5e-08 Score=106.37 Aligned_cols=90 Identities=20% Similarity=0.169 Sum_probs=67.3
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCCh
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGN 292 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~ 292 (490)
.+|++++|....-+++.+.+..... ....+||+|++||||+++|++|.+.. +.+++.++|..+..+
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAK-----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 4688898888877777777665432 23469999999999999999999875 469999999988542
Q ss_pred HHHHHHHHh--------------ccCCeEEEEeccchh
Q 011254 293 MELRNLLIA--------------TENKSILVVEDIDCS 316 (490)
Q Consensus 293 ~~l~~l~~~--------------~~~~sIl~iDdiD~l 316 (490)
.--..+|.. ..+++.|||||||.+
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l 428 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYL 428 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhC
Confidence 222344431 235678999999987
No 201
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.6e-08 Score=101.75 Aligned_cols=65 Identities=28% Similarity=0.432 Sum_probs=56.4
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC--------ChHHHHHHHHhcc------CCeEEEEeccchhh
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR--------GNMELRNLLIATE------NKSILVVEDIDCSI 317 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~--------~~~~l~~l~~~~~------~~sIl~iDdiD~l~ 317 (490)
+..+||.||+|+|||.||+.||..++.||..++|+.+. -++-+.+|+..+. +..|+||||+|.+.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~ 304 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT 304 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence 45799999999999999999999999999999999882 1456778887763 68999999999986
No 202
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.76 E-value=7.6e-08 Score=98.43 Aligned_cols=168 Identities=15% Similarity=0.163 Sum_probs=98.3
Q ss_pred ccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCChHHHHH-
Q 011254 222 AMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGNMELRN- 297 (490)
Q Consensus 222 ~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l~~- 297 (490)
+|....-+.+.+.+.... .....+||+|++||||+++|++|.... +.+++.++|..+.. ..+..
T Consensus 2 iG~S~~m~~~~~~~~~~a-----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~ 69 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLA-----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSE 69 (329)
T ss_pred CcCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHH
Confidence 344444555555555332 224569999999999999999998765 47999999998743 33332
Q ss_pred HH-----------------HhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcc
Q 011254 298 LL-----------------IATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG 360 (490)
Q Consensus 298 l~-----------------~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg 360 (490)
+| .....+..|||||||.+-. .....|+.+++.
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~------------------------------~~Q~~Ll~~l~~ 119 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASL------------------------------LVQEKLLRVIEY 119 (329)
T ss_pred HhccccccccCcccccCCchhhCCCCEEEeCChHhCCH------------------------------HHHHHHHHHHHc
Confidence 22 1223568999999998732 122345555532
Q ss_pred cc-cC------CCCcEEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCC--HHHHHHHHHHhhCCC----C--
Q 011254 361 LW-SS------CGDERIIIFTTNHK-------DRLDPAFLRPGRMD-VHIHMSYCT--SCGFKMLASSYLGIT----E-- 417 (490)
Q Consensus 361 l~-s~------~~~~~iiI~TTN~~-------~~LD~aLlRpGR~d-~~I~~~~p~--~~~r~~L~~~~l~~~----~-- 417 (490)
-. .. ...++-||+|||.. ..+.+.|.. |+. ..|++|... .+....|+..|+... +
T Consensus 120 ~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~ 197 (329)
T TIGR02974 120 GEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLP 197 (329)
T ss_pred CcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCC
Confidence 11 10 01235677777753 244566665 663 456666655 244556776666421 1
Q ss_pred --CCchHHHHHhhhccCC
Q 011254 418 --HPLFLEVEGLIEKAKV 433 (490)
Q Consensus 418 --~~l~~~i~~l~~~~~~ 433 (490)
..+.++..+.+....+
T Consensus 198 ~~~~ls~~a~~~L~~y~W 215 (329)
T TIGR02974 198 LFPGFTPQAREQLLEYHW 215 (329)
T ss_pred CCCCcCHHHHHHHHhCCC
Confidence 2345555555555444
No 203
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.76 E-value=4.7e-08 Score=99.68 Aligned_cols=63 Identities=27% Similarity=0.372 Sum_probs=47.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCC---------hHHHHHHHHhccCCeEEEEeccchh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRG---------NMELRNLLIATENKSILVVEDIDCS 316 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~---------~~~l~~l~~~~~~~sIl~iDdiD~l 316 (490)
.+++||||||||||+|+.|||+++ |+.++.++..++.. .......+....+..+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCC
Confidence 789999999999999999999987 77888877665411 1122222455556789999999754
No 204
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.74 E-value=6.1e-08 Score=95.55 Aligned_cols=92 Identities=25% Similarity=0.462 Sum_probs=60.9
Q ss_pred CccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCC--
Q 011254 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRG-- 291 (490)
Q Consensus 217 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~-- 291 (490)
.+.++-+.+...+.....+..+.. +|. -+.+++||||||||||+||.|||+++ |..++.+..+++..
T Consensus 77 ~~~d~~~~~~~~~~~l~~~~~~~~---~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 77 EEFDFEFQPGIDKKALEDLASLVE---FFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred ccccccCCcchhHHHHHHHHHHHH---Hhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 344555555555555444443332 233 35789999999999999999999987 67888888777611
Q ss_pred -----hHHH-HHHHHhccCCeEEEEeccchh
Q 011254 292 -----NMEL-RNLLIATENKSILVVEDIDCS 316 (490)
Q Consensus 292 -----~~~l-~~l~~~~~~~sIl~iDdiD~l 316 (490)
.... .++.....+..+|+|||+-..
T Consensus 149 k~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 149 KAAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred HHHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 1112 223333667889999999654
No 205
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.73 E-value=4.2e-07 Score=88.88 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=46.3
Q ss_pred EEEEEecCC-------------CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc----
Q 011254 369 RIIIFTTNH-------------KDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA---- 431 (490)
Q Consensus 369 ~iiI~TTN~-------------~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~---- 431 (490)
-+|||+||+ |..+++.|+. |+ +.|..-..+.++.++|++.....+...+.++.-.++.+.
T Consensus 326 PivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~t 402 (456)
T KOG1942|consen 326 PIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTST 402 (456)
T ss_pred ceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccch
Confidence 478899996 5667888888 87 556555566677777887777776666655443333321
Q ss_pred -------CCCHHHHHHHH
Q 011254 432 -------KVTPADVAEQL 442 (490)
Q Consensus 432 -------~~tpa~i~~~l 442 (490)
-++|+.+....
T Consensus 403 sLRy~vqLl~p~~~~ak~ 420 (456)
T KOG1942|consen 403 SLRYAVQLLTPASILAKT 420 (456)
T ss_pred hHHHHHHhcCHHHHHHHH
Confidence 26777765543
No 206
>PRK06921 hypothetical protein; Provisional
Probab=98.71 E-value=8.7e-08 Score=95.11 Aligned_cols=63 Identities=29% Similarity=0.353 Sum_probs=45.7
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc----cCcEEEEeccccCC-----hHHHHHHHHhccCCeEEEEeccch
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELTNLRG-----NMELRNLLIATENKSILVVEDIDC 315 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s~~~~-----~~~l~~l~~~~~~~sIl~iDdiD~ 315 (490)
..+++|+||||||||+|+.|||+++ +..++.+...++.. -..+...+....+..+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4689999999999999999999986 56777777554311 012233344455778999999953
No 207
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.69 E-value=3.6e-07 Score=99.18 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=66.3
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccC
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLR 290 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~ 290 (490)
...+|++++|....-+++++.+..... ....+||+|++||||+++|+++.... +.+++.++|+.+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~-----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM-----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 345799999988877777777654322 13459999999999999999987654 4689999999875
Q ss_pred ChHHHH-HHHH-----------------hccCCeEEEEeccchhh
Q 011254 291 GNMELR-NLLI-----------------ATENKSILVVEDIDCSI 317 (490)
Q Consensus 291 ~~~~l~-~l~~-----------------~~~~~sIl~iDdiD~l~ 317 (490)
. ..+. .+|. ...+...|||||||.+-
T Consensus 268 ~-~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~ 311 (520)
T PRK10820 268 D-DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMS 311 (520)
T ss_pred H-HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCC
Confidence 3 2222 2332 12346789999999873
No 208
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.66 E-value=9.1e-08 Score=102.70 Aligned_cols=47 Identities=26% Similarity=0.439 Sum_probs=35.8
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
..|+++.|+...++.+.-.+ .....++|.||||||||+++++|+..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 47899999887766553222 123469999999999999999999754
No 209
>PRK09183 transposase/IS protein; Provisional
Probab=98.62 E-value=7e-08 Score=95.44 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=46.0
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCC-------hHHHHHHHHh-ccCCeEEEEeccchh
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRG-------NMELRNLLIA-TENKSILVVEDIDCS 316 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~-------~~~l~~l~~~-~~~~sIl~iDdiD~l 316 (490)
..+++|+||||||||+|+.++++.+ |+.+..++..++.. ...+...+.. ...+.+|+|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 4579999999999999999998764 77777777554421 1123344544 456789999999754
No 210
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.61 E-value=5.1e-08 Score=83.22 Aligned_cols=61 Identities=20% Similarity=0.347 Sum_probs=39.5
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHHHHhccCCeEEEEeccchh
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNLLIATENKSILVVEDIDCS 316 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l~~~~~~~sIl~iDdiD~l 316 (490)
|.||||||+|||++++.||..+.-.+-......+-....-.+.+.......|+++||+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcc
Confidence 5799999999999999999887533311111111111112245566667789999999755
No 211
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.60 E-value=1.3e-07 Score=101.20 Aligned_cols=140 Identities=21% Similarity=0.238 Sum_probs=85.4
Q ss_pred CccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcE--EEEeccccC----
Q 011254 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV--YDLELTNLR---- 290 (490)
Q Consensus 217 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~--~~l~~s~~~---- 290 (490)
.|..+.|....++.+.- .......++|+||||||||++++.|++.+.-.- ..++.+.+.
T Consensus 189 d~~~v~Gq~~~~~al~l---------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEI---------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhhe---------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 56677776555544311 112235699999999999999999998763110 011111110
Q ss_pred ---------------------------ChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhccccccccccccccc
Q 011254 291 ---------------------------GNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNL 343 (490)
Q Consensus 291 ---------------------------~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~ 343 (490)
+....+.-........+|||||++.+-
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~-------------------------- 307 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFE-------------------------- 307 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCC--------------------------
Confidence 001111122233457899999997652
Q ss_pred CCchhhHHHHHHHHhc-ccc--cC------CCCcEEEEEecCCCC---------------------CCCccccCCCceee
Q 011254 344 NQVPQVTLSGMLNFID-GLW--SS------CGDERIIIFTTNHKD---------------------RLDPAFLRPGRMDV 393 (490)
Q Consensus 344 ~~~~~~~ls~LL~~id-gl~--s~------~~~~~iiI~TTN~~~---------------------~LD~aLlRpGR~d~ 393 (490)
..++..|++.|+ |.. +. ...++.+|+|+|... +|.++++. |||.
T Consensus 308 ----~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL 381 (506)
T PRK09862 308 ----RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDL 381 (506)
T ss_pred ----HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccE
Confidence 344566666663 221 00 123478999999753 47778999 9999
Q ss_pred EEEeCCCCHH
Q 011254 394 HIHMSYCTSC 403 (490)
Q Consensus 394 ~I~~~~p~~~ 403 (490)
++++++++.+
T Consensus 382 ~v~v~~~~~~ 391 (506)
T PRK09862 382 SLEIPLPPPG 391 (506)
T ss_pred EEEeCCCCHH
Confidence 9999999876
No 212
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.60 E-value=2.9e-07 Score=94.68 Aligned_cols=156 Identities=21% Similarity=0.266 Sum_probs=102.5
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc-------Cc-------
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-------FD------- 280 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-------~~------- 280 (490)
.-.|.-+.|++..|..|.-... .|--.|+|+-|+.|||||++++|||..|. ++
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av-------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAV-------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhc-------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 4568889999999988765433 22336899999999999999999999872 11
Q ss_pred --------------------------EEEEecccc----CChHHHHHHHHh-----------ccCCeEEEEeccchhhhh
Q 011254 281 --------------------------VYDLELTNL----RGNMELRNLLIA-----------TENKSILVVEDIDCSIEL 319 (490)
Q Consensus 281 --------------------------~~~l~~s~~----~~~~~l~~l~~~-----------~~~~sIl~iDdiD~l~~~ 319 (490)
++.+.++.. .+.-++.+.+.. ..++.||+|||+..+-
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--
Confidence 111111111 111123333332 1257899999997652
Q ss_pred hhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhc---------ccccCCCCcEEEEEecCCC-CCCCccccCCC
Q 011254 320 QDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFID---------GLWSSCGDERIIIFTTNHK-DRLDPAFLRPG 389 (490)
Q Consensus 320 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~id---------gl~s~~~~~~iiI~TTN~~-~~LD~aLlRpG 389 (490)
......||+.+. |+.-.-.-.+++|+|+|.- ..|-|-|+.
T Consensus 158 ----------------------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD-- 207 (423)
T COG1239 158 ----------------------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD-- 207 (423)
T ss_pred ----------------------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--
Confidence 223445665543 4433333458999999976 478899999
Q ss_pred ceeeEEEeCCCC-HHHHHHHHHHhhCC
Q 011254 390 RMDVHIHMSYCT-SCGFKMLASSYLGI 415 (490)
Q Consensus 390 R~d~~I~~~~p~-~~~r~~L~~~~l~~ 415 (490)
||..+|...+|. .+++.++.++-+..
T Consensus 208 Rfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 208 RFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred hhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 999999998775 46677777766554
No 213
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.59 E-value=4e-07 Score=90.04 Aligned_cols=126 Identities=21% Similarity=0.269 Sum_probs=70.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccC-cEEEEec--ccc-----------------CC--h----HHHHHHHHh---ccCC
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNF-DVYDLEL--TNL-----------------RG--N----MELRNLLIA---TENK 305 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~-~~~~l~~--s~~-----------------~~--~----~~l~~l~~~---~~~~ 305 (490)
-++|+||||+|||++++.+++.+.. .+..... ... .. . ..+...+.. ..++
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999999998862 2221111 111 00 0 112222211 2357
Q ss_pred eEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCC---CCC
Q 011254 306 SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKD---RLD 382 (490)
Q Consensus 306 sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~---~LD 382 (490)
.+|+|||+|.+.. .....+..|.+.... .+..+.||++. .++ .+.
T Consensus 125 ~vliiDe~~~l~~---------------------------~~~~~l~~l~~~~~~----~~~~~~vvl~g-~~~~~~~l~ 172 (269)
T TIGR03015 125 ALLVVDEAQNLTP---------------------------ELLEELRMLSNFQTD----NAKLLQIFLVG-QPEFRETLQ 172 (269)
T ss_pred eEEEEECcccCCH---------------------------HHHHHHHHHhCcccC----CCCeEEEEEcC-CHHHHHHHc
Confidence 8999999997631 001122223222111 11123333333 322 221
Q ss_pred ----ccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 383 ----PAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 383 ----~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
..+.+ |+...++++..+.++...++...+.
T Consensus 173 ~~~~~~l~~--r~~~~~~l~~l~~~e~~~~l~~~l~ 206 (269)
T TIGR03015 173 SPQLQQLRQ--RIIASCHLGPLDREETREYIEHRLE 206 (269)
T ss_pred CchhHHHHh--heeeeeeCCCCCHHHHHHHHHHHHH
Confidence 13445 8888999999999999888887774
No 214
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.59 E-value=5.8e-07 Score=87.26 Aligned_cols=65 Identities=23% Similarity=0.267 Sum_probs=55.7
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHHHHhcc-CCeEEEEeccchh
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNLLIATE-NKSILVVEDIDCS 316 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l~~~~~-~~sIl~iDdiD~l 316 (490)
...|-.++||+|||||.+++++|..+|..++.++|++-.+-..+.++|..+. .++.+++||++++
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl 96 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRL 96 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCS
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhh
Confidence 3467789999999999999999999999999999999888899999998765 6999999999987
No 215
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.58 E-value=3.4e-07 Score=87.64 Aligned_cols=157 Identities=20% Similarity=0.278 Sum_probs=83.9
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCc---EEEEec-ccc---------------------------------------
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLEL-TNL--------------------------------------- 289 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~---~~~l~~-s~~--------------------------------------- 289 (490)
.+.++||||.|+|||+|++.+.+.+.-. .+.+.. ...
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 4679999999999999999999988321 111111 000
Q ss_pred -CChHHHHHHHHhc---cCCeEEEEeccchhh-hhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 290 -RGNMELRNLLIAT---ENKSILVVEDIDCSI-ELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 290 -~~~~~l~~l~~~~---~~~sIl~iDdiD~l~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
.....+..++... ..+.||+|||+|.+. . .......+..|.+.++.....
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~~ 154 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIA-------------------------SEEDKDFLKSLRSLLDSLLSQ 154 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBC-------------------------TTTTHHHHHHHHHHHHH----
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhc-------------------------ccchHHHHHHHHHHHhhcccc
Confidence 0011233333322 245899999999885 2 112244566677777774443
Q ss_pred CCCcEEEEEecCCC----C--CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCC---chHHHHHhhhccCCCH
Q 011254 365 CGDERIIIFTTNHK----D--RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHP---LFLEVEGLIEKAKVTP 435 (490)
Q Consensus 365 ~~~~~iiI~TTN~~----~--~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~---l~~~i~~l~~~~~~tp 435 (490)
.++.+|+++... + .-...+. ||+.. ++++..+.++..+++...+... .. -.++++.+..-++-.|
T Consensus 155 --~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 155 --QNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-H
T ss_pred --CCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCH
Confidence 234444444321 1 1122333 47877 9999999999999999876444 32 2456667766666777
Q ss_pred HHHHH
Q 011254 436 ADVAE 440 (490)
Q Consensus 436 a~i~~ 440 (490)
.-|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 76654
No 216
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.9e-07 Score=89.02 Aligned_cols=69 Identities=17% Similarity=0.310 Sum_probs=50.1
Q ss_pred cccChhHHHHHHHHHHHHHHcHHHHHHh-CCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc
Q 011254 221 LAMDSDMKQMIMDDLERFVKRKEFYRNV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL 289 (490)
Q Consensus 221 l~g~~~~k~~i~~~l~~~l~~~~~y~~~-g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 289 (490)
++|+.+.|+.+--.+..-.++.+.-..+ .--.|+.+|..||.|+|||.+|+.+|+..+.||+.+..+.+
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 5789999988766554333222211111 12357899999999999999999999999999998876554
No 217
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.57 E-value=3.3e-07 Score=99.17 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=68.5
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecccc
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNL 289 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~ 289 (490)
....+|++++|....-+.+.+.+..+... ...+||+|++||||+++|++|.+.. +.+|+.++|..+
T Consensus 206 ~~~~~f~~iiG~S~~m~~~~~~i~~~A~~-----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l 274 (526)
T TIGR02329 206 RTRYRLDDLLGASAPMEQVRALVRLYARS-----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAI 274 (526)
T ss_pred ccccchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccC
Confidence 33467999999998888887777654322 3579999999999999999998764 579999999987
Q ss_pred CChHHHHH-HHH------------------hccCCeEEEEeccchh
Q 011254 290 RGNMELRN-LLI------------------ATENKSILVVEDIDCS 316 (490)
Q Consensus 290 ~~~~~l~~-l~~------------------~~~~~sIl~iDdiD~l 316 (490)
.. ..+.. +|. +......|||||||.+
T Consensus 275 ~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L 319 (526)
T TIGR02329 275 AE-SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEM 319 (526)
T ss_pred Ch-hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhC
Confidence 43 22332 222 1234678999999987
No 218
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.54 E-value=5.5e-07 Score=97.45 Aligned_cols=89 Identities=15% Similarity=0.155 Sum_probs=67.1
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHh-----------ccCcEEEE
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANY-----------LNFDVYDL 284 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~-----------l~~~~~~l 284 (490)
.+|++++|....-+.+.+.+..+-. ....+||+|++||||+++|++|-+. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~-----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR-----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 4699999999888888777764432 2357999999999999999999887 46799999
Q ss_pred eccccCChHHHHH-HHH------------------hccCCeEEEEeccchh
Q 011254 285 ELTNLRGNMELRN-LLI------------------ATENKSILVVEDIDCS 316 (490)
Q Consensus 285 ~~s~~~~~~~l~~-l~~------------------~~~~~sIl~iDdiD~l 316 (490)
+|+.+.. ..+.. +|. +......||||||+.+
T Consensus 285 nCaal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L 334 (538)
T PRK15424 285 NCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 334 (538)
T ss_pred ecccCCh-hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhC
Confidence 9998743 22222 222 1234578999999987
No 219
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.53 E-value=1.6e-07 Score=83.73 Aligned_cols=76 Identities=29% Similarity=0.356 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC---cEEEEeccccCChHHHHHHHHh
Q 011254 225 SDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF---DVYDLELTNLRGNMELRNLLIA 301 (490)
Q Consensus 225 ~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~---~~~~l~~s~~~~~~~l~~l~~~ 301 (490)
...-+++.+.+..... ....+||+|+|||||+++|++|....+. +++.+++.... .+++..
T Consensus 4 S~~~~~l~~~l~~~a~-----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l~~ 67 (138)
T PF14532_consen 4 SPAMRRLRRQLERLAK-----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELLEQ 67 (138)
T ss_dssp CHHHHHHHHHHHHHHC-----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHHHH
T ss_pred CHHHHHHHHHHHHHhC-----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHHHH
Confidence 3444555555554332 2456999999999999999999998754 55556666543 345555
Q ss_pred ccCCeEEEEeccchhh
Q 011254 302 TENKSILVVEDIDCSI 317 (490)
Q Consensus 302 ~~~~sIl~iDdiD~l~ 317 (490)
+ .+..|+|+|||.+-
T Consensus 68 a-~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 68 A-KGGTLYLKNIDRLS 82 (138)
T ss_dssp C-TTSEEEEECGCCS-
T ss_pred c-CCCEEEECChHHCC
Confidence 4 77889999999883
No 220
>PHA02624 large T antigen; Provisional
Probab=98.52 E-value=3.8e-07 Score=98.11 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=80.8
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhh
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKA 328 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~ 328 (490)
|+|.++.+|||||||||||+++.+|++.++-.+..++.+. +.+.-.+.-+...-+.+|||+-.-.-.... .
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt----~ks~FwL~pl~D~~~~l~dD~t~~~~~~~~-----L 497 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQPADNKD-----L 497 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc----chhHHHhhhhhhceEEEeeecccccccccc-----C
Confidence 6788899999999999999999999999976666676443 233334445556789999998633210000 0
Q ss_pred cccccccccccccccCCchhhHHHHHHHHhcccccCCC-----CcE-----EEEEecCCCCCCCccccCCCceeeEEEeC
Q 011254 329 TNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCG-----DER-----IIIFTTNHKDRLDPAFLRPGRMDVHIHMS 398 (490)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~-----~~~-----iiI~TTN~~~~LD~aLlRpGR~d~~I~~~ 398 (490)
. .+..-..+..|-|.+||-..-+= ..+ -.|.|||. ..|+..+.- ||..+++|.
T Consensus 498 p--------------~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~ 560 (647)
T PHA02624 498 P--------------SGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFK 560 (647)
T ss_pred C--------------cccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhcccc
Confidence 0 11112235667788888611100 001 35678886 456777777 999988886
Q ss_pred C
Q 011254 399 Y 399 (490)
Q Consensus 399 ~ 399 (490)
.
T Consensus 561 ~ 561 (647)
T PHA02624 561 P 561 (647)
T ss_pred c
Confidence 3
No 221
>PF13173 AAA_14: AAA domain
Probab=98.52 E-value=5.5e-07 Score=79.23 Aligned_cols=63 Identities=21% Similarity=0.415 Sum_probs=47.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc--CcEEEEeccccCChH----HHHHHHHhc--cCCeEEEEeccchh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN--FDVYDLELTNLRGNM----ELRNLLIAT--ENKSILVVEDIDCS 316 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~--~~~~~l~~s~~~~~~----~l~~l~~~~--~~~sIl~iDdiD~l 316 (490)
+.++|+||.|||||++++.++..+. .++..+++.+..... ++.+.+... ..+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999999886 788888877653211 133444443 36799999999866
No 222
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=8.8e-06 Score=81.28 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=81.2
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhccC----------------cEEEEeccc---cCChHHHHHHHHhcc------CC
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNF----------------DVYDLELTN---LRGNMELRNLLIATE------NK 305 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~----------------~~~~l~~s~---~~~~~~l~~l~~~~~------~~ 305 (490)
..+.+|||+||+|+||+.+|.++|..+-+ |++.+.... ..+-++++.+..... ..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 44668999999999999999999998743 344442221 123456666655543 34
Q ss_pred eEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccc
Q 011254 306 SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAF 385 (490)
Q Consensus 306 sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aL 385 (490)
-|++||++|.+- ...-+.||..++.. ++..++|+.|+.++.|.|.+
T Consensus 97 kv~ii~~ad~mt------------------------------~~AaNaLLK~LEEP----p~~~~fiL~~~~~~~ll~TI 142 (290)
T PRK05917 97 KIYIIHEADRMT------------------------------LDAISAFLKVLEDP----PQHGVIILTSAKPQRLPPTI 142 (290)
T ss_pred eEEEEechhhcC------------------------------HHHHHHHHHHhhcC----CCCeEEEEEeCChhhCcHHH
Confidence 599999999873 23457799998874 35589999999999999999
Q ss_pred cCCCceeeEEEeCCC
Q 011254 386 LRPGRMDVHIHMSYC 400 (490)
Q Consensus 386 lRpGR~d~~I~~~~p 400 (490)
+. |+ ..+.|+.+
T Consensus 143 ~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 143 RS--RS-LSIHIPME 154 (290)
T ss_pred Hh--cc-eEEEccch
Confidence 87 76 56777643
No 223
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=3.6e-06 Score=82.48 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=79.9
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhcc----------------------CcEEEEeccc-cCChHHHHHHHHhcc----
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLN----------------------FDVYDLELTN-LRGNMELRNLLIATE---- 303 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~----------------------~~~~~l~~s~-~~~~~~l~~l~~~~~---- 303 (490)
..+.++||+||+|+||..+|.++|..+- -|++.+.... .-+.++++++.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4567899999999999999999998762 2333332111 123445555554322
Q ss_pred ---CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCC
Q 011254 304 ---NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDR 380 (490)
Q Consensus 304 ---~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~ 380 (490)
..-|++|+++|.+- ...-+.||..++.. ....++|++|+.++.
T Consensus 85 e~~~~KV~II~~ae~m~------------------------------~~AaNaLLK~LEEP----p~~t~fiLit~~~~~ 130 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN------------------------------KQSANSLLKLIEEP----PKNTYGIFTTRNENN 130 (261)
T ss_pred hcCCCEEEEeccHhhhC------------------------------HHHHHHHHHhhcCC----CCCeEEEEEECChHh
Confidence 24688999998773 23557799998874 455899999999999
Q ss_pred CCccccCCCceeeEEEeCCC
Q 011254 381 LDPAFLRPGRMDVHIHMSYC 400 (490)
Q Consensus 381 LD~aLlRpGR~d~~I~~~~p 400 (490)
+.|.++. |. ..+.++.+
T Consensus 131 lLpTI~S--RC-q~~~~~~~ 147 (261)
T PRK05818 131 ILNTILS--RC-VQYVVLSK 147 (261)
T ss_pred CchHhhh--he-eeeecCCh
Confidence 9999998 86 45677665
No 224
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.4e-07 Score=98.28 Aligned_cols=48 Identities=27% Similarity=0.429 Sum_probs=40.0
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
...|.||.|++..|+.+.-... -..++|++||||||||++|+.|..-|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 4579999999999998854432 25789999999999999999998765
No 225
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.48 E-value=1.3e-06 Score=98.09 Aligned_cols=89 Identities=19% Similarity=0.322 Sum_probs=67.2
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCCh
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGN 292 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~ 292 (490)
.+|++++|.....+.+.+.+..+... ...+||+|+||||||++|++|.... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~-----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS-----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 57899999999999888888754322 3579999999999999999998864 579999999886321
Q ss_pred HHHH-HHH-----------------HhccCCeEEEEeccchh
Q 011254 293 MELR-NLL-----------------IATENKSILVVEDIDCS 316 (490)
Q Consensus 293 ~~l~-~l~-----------------~~~~~~sIl~iDdiD~l 316 (490)
.+. .+| .....++.|||||||.+
T Consensus 442 -~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L 482 (686)
T PRK15429 442 -LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 482 (686)
T ss_pred -HhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhC
Confidence 111 111 12335689999999987
No 226
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.45 E-value=2e-06 Score=94.73 Aligned_cols=50 Identities=34% Similarity=0.444 Sum_probs=40.7
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCc
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD 280 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~ 280 (490)
.-|++++|+++.++.+...+. .++.++|+||||||||++++++|+.++.+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~---------------~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK---------------QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH---------------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 568899999888877655443 12489999999999999999999999654
No 227
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=7e-06 Score=92.27 Aligned_cols=122 Identities=25% Similarity=0.362 Sum_probs=79.6
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhCCC-CCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecccc------
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKA-WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNL------ 289 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~-~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~------ 289 (490)
.|+|+++....|-+.+..... .++.+ +.-.+||.||.|+|||-||+|+|..+ .-.++.++++++
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRA------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hccchHHHHHHHHHHHHhhhc------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 567888888877777764322 12222 33448899999999999999999998 356788888863
Q ss_pred -------CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcc
Q 011254 290 -------RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG 360 (490)
Q Consensus 290 -------~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg 360 (490)
.+....-.+..... .-+||+|||||..- ...++.|+..+|.
T Consensus 637 igsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh------------------------------~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 637 IGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH------------------------------PDVLNILLQLLDR 686 (898)
T ss_pred cCCCcccccchhHHHHHHHHhcCCceEEEEechhhcC------------------------------HHHHHHHHHHHhc
Confidence 12223333444333 34999999998651 2345566666662
Q ss_pred --cccCCC-----CcEEEEEecCC
Q 011254 361 --LWSSCG-----DERIIIFTTNH 377 (490)
Q Consensus 361 --l~s~~~-----~~~iiI~TTN~ 377 (490)
+....| .+.|||+|+|-
T Consensus 687 GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 687 GRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred CccccCCCcEeeccceEEEEeccc
Confidence 112222 35799999885
No 228
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.41 E-value=1.1e-06 Score=98.69 Aligned_cols=127 Identities=16% Similarity=0.208 Sum_probs=77.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccC-------cEEEEeccccCC-------hHHHHHHHHhccCCeEEEEeccchhhhhh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNF-------DVYDLELTNLRG-------NMELRNLLIATENKSILVVEDIDCSIELQ 320 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~-------~~~~l~~s~~~~-------~~~l~~l~~~~~~~sIl~iDdiD~l~~~~ 320 (490)
.+||.|+||||||.+++++++.... ++..+.++.... ...+..-........+++|||+|.+-.
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~-- 571 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHN-- 571 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCH--
Confidence 4999999999999999999986533 333333333210 000000011123568999999998732
Q ss_pred hhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcc---------cccCCCCcEEEEEecCCCC------------
Q 011254 321 DRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG---------LWSSCGDERIIIFTTNHKD------------ 379 (490)
Q Consensus 321 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg---------l~s~~~~~~iiI~TTN~~~------------ 379 (490)
...+.|+..|+. +...-....-||+|+|..+
T Consensus 572 ----------------------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~en 623 (915)
T PTZ00111 572 ----------------------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIEN 623 (915)
T ss_pred ----------------------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccc
Confidence 122345555542 1111123467999999852
Q ss_pred -CCCccccCCCceeeEE-EeCCCCHHHHHHHHHHhh
Q 011254 380 -RLDPAFLRPGRMDVHI-HMSYCTSCGFKMLASSYL 413 (490)
Q Consensus 380 -~LD~aLlRpGR~d~~I-~~~~p~~~~r~~L~~~~l 413 (490)
.|+++|+. |||... -++.|+.+.=+.|+.+.+
T Consensus 624 i~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 624 INISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred cCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 46799999 999874 458888776566655444
No 229
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=2.1e-05 Score=78.73 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=84.6
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhcc------------------------CcEEEEeccc-cCChHHHHHHHHhcc--
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLN------------------------FDVYDLELTN-LRGNMELRNLLIATE-- 303 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~------------------------~~~~~l~~s~-~~~~~~l~~l~~~~~-- 303 (490)
..+.+|||+|| +||+++|.++|..+- -|++.+.... ..+-+++|.+.....
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 44678999996 689999999998762 2333333221 123466777665543
Q ss_pred ----CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCC
Q 011254 304 ----NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKD 379 (490)
Q Consensus 304 ----~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~ 379 (490)
..-|++||++|.+- ...-+.||..++.. +.+.++|++|+.++
T Consensus 100 p~~~~~kV~II~~ad~m~------------------------------~~AaNaLLKtLEEP----p~~t~~iL~t~~~~ 145 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH------------------------------VNAANSLLKVIEEP----QSEIYIFLLTNDEN 145 (290)
T ss_pred cccCCcEEEEeehhhhcC------------------------------HHHHHHHHHHhcCC----CCCeEEEEEECChh
Confidence 34699999999873 23457799999874 44589999999999
Q ss_pred CCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 011254 380 RLDPAFLRPGRMDVHIHMSYCTSCGFKMLAS 410 (490)
Q Consensus 380 ~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~ 410 (490)
.|-|.++. |. .+|.|+. +.+....++.
T Consensus 146 ~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 146 KVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred hCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 99999998 76 6788876 5555444443
No 230
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.40 E-value=1.1e-06 Score=76.83 Aligned_cols=38 Identities=37% Similarity=0.603 Sum_probs=29.5
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc--------cCcEEEEeccccC
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL--------NFDVYDLELTNLR 290 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l--------~~~~~~l~~s~~~ 290 (490)
++.++++||||+|||++++.++..+ +.+++.+++....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 3568999999999999999999988 6788888776653
No 231
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.40 E-value=7.9e-06 Score=88.40 Aligned_cols=171 Identities=19% Similarity=0.232 Sum_probs=105.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc----------cCcEEEEeccccCChH----------------------HHHHHHH--
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLELTNLRGNM----------------------ELRNLLI-- 300 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l----------~~~~~~l~~s~~~~~~----------------------~l~~l~~-- 300 (490)
.+++.|-||||||.+++.+-+.| .++++.+|.-.+.+.. .|..-|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 47788999999999999999976 3677777766653322 2222333
Q ss_pred -hccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCC
Q 011254 301 -ATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKD 379 (490)
Q Consensus 301 -~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~ 379 (490)
.-..++||+|||+|.|+. | ...-|-|++|-.... +...+||+..|+.+
T Consensus 504 k~~~~~~VvLiDElD~Lvt---r---------------------------~QdVlYn~fdWpt~~-~sKLvvi~IaNTmd 552 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVT---R---------------------------SQDVLYNIFDWPTLK-NSKLVVIAIANTMD 552 (767)
T ss_pred CCCCCCEEEEeccHHHHhc---c---------------------------cHHHHHHHhcCCcCC-CCceEEEEeccccc
Confidence 112578999999999974 1 112355666644332 33466666667654
Q ss_pred CCCccccC---CCcee-eEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhccCCCHHHHHHHHHcCCCHHHHHHHH
Q 011254 380 RLDPAFLR---PGRMD-VHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKAKVTPADVAEQLMRNEVPEIALREL 455 (490)
Q Consensus 380 ~LD~aLlR---pGR~d-~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~~~tpa~i~~~l~~~~~~~~al~~l 455 (490)
|+..++- ..|++ ..|.|...+..|..+|+...|...++ ...+..+|+.+ -|+. -++|++.|++-.
T Consensus 553 -lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvar------kVAa---vSGDaRraldic 621 (767)
T KOG1514|consen 553 -LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVAR------KVAA---VSGDARRALDIC 621 (767)
T ss_pred -CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHH------HHHh---ccccHHHHHHHH
Confidence 3333331 12554 34788999999999999987754422 22233333321 1222 357888888877
Q ss_pred HHHHHHHhhcch
Q 011254 456 IQFLEIKRRESD 467 (490)
Q Consensus 456 ~~~l~~~~~~~~ 467 (490)
..+.+...+...
T Consensus 622 ~RA~Eia~~~~~ 633 (767)
T KOG1514|consen 622 RRAAEIAEERNV 633 (767)
T ss_pred HHHHHHhhhhcc
Confidence 777776666544
No 232
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.39 E-value=1.7e-06 Score=89.70 Aligned_cols=159 Identities=15% Similarity=0.159 Sum_probs=104.3
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHh----ccCcEEEEeccccC
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANY----LNFDVYDLELTNLR 290 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~----l~~~~~~l~~s~~~ 290 (490)
...+++|+|....-+++++.++. |. +....+|++|++||||+.+|++|... .+.||+.+||+.+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-------~a----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-------YA----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-------hC----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 45689999999988888888875 21 23456999999999999999999854 36799999999997
Q ss_pred ChHHHHHHHHhc-----------------cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHH
Q 011254 291 GNMELRNLLIAT-----------------ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSG 353 (490)
Q Consensus 291 ~~~~l~~l~~~~-----------------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 353 (490)
.+-....+|.-. .+..+||+|||..+-. ...-.
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~------------------------------~~Q~k 192 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP------------------------------EGQEK 192 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCH------------------------------hHHHH
Confidence 777666666421 2468999999987732 11233
Q ss_pred HHHHhcc-----ccc--CCCCcEEEEEecCC-CC-CCCc--cccCCCceeeEEEeCCCCH--HHHHHHHHHhhCC
Q 011254 354 MLNFIDG-----LWS--SCGDERIIIFTTNH-KD-RLDP--AFLRPGRMDVHIHMSYCTS--CGFKMLASSYLGI 415 (490)
Q Consensus 354 LL~~idg-----l~s--~~~~~~iiI~TTN~-~~-~LD~--aLlRpGR~d~~I~~~~p~~--~~r~~L~~~~l~~ 415 (490)
||.+||. +.+ .....+-+|++||- ++ .+-. .|.| -|+...|++|...+ +++..|++.|+..
T Consensus 193 Ll~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~~~~I~LPpLrER~~Di~~L~e~Fl~~ 266 (403)
T COG1221 193 LLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTR-RLNILTITLPPLRERKEDILLLAEHFLKS 266 (403)
T ss_pred HHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhh-hhcCceecCCChhhchhhHHHHHHHHHHH
Confidence 6666663 111 11134667776663 21 2222 3332 16667777776654 3355677777653
No 233
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.38 E-value=8.9e-06 Score=85.84 Aligned_cols=74 Identities=23% Similarity=0.372 Sum_probs=53.8
Q ss_pred CCcceecccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEE
Q 011254 204 GDVWQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (490)
Q Consensus 204 ~~~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 283 (490)
...|-. --.|.+.++|+.+.....++...+..+.. .......+-+||+||+||||||.++.||.++|+.+..
T Consensus 69 ~elW~e--Ky~P~t~eeLAVHkkKI~eVk~WL~~~~~------~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 69 FELWVE--KYKPRTLEELAVHKKKISEVKQWLKQVAE------FTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred cchhHH--hcCcccHHHHhhhHHhHHHHHHHHHHHHH------hccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 446743 45689999999997777766666552111 1112334568999999999999999999999998876
Q ss_pred Ee
Q 011254 284 LE 285 (490)
Q Consensus 284 l~ 285 (490)
-.
T Consensus 141 w~ 142 (634)
T KOG1970|consen 141 WS 142 (634)
T ss_pred ec
Confidence 54
No 234
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=3.7e-05 Score=77.50 Aligned_cols=122 Identities=14% Similarity=0.164 Sum_probs=89.4
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhccC-------------cEEEEe--ccccCChHHHHHHHHhcc-------CCeEE
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNF-------------DVYDLE--LTNLRGNMELRNLLIATE-------NKSIL 308 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~-------------~~~~l~--~s~~~~~~~l~~l~~~~~-------~~sIl 308 (490)
..+..|||||+.|.||+.++.++|+.+.+ ++..++ ... .+-++++.+....+ .+-|+
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-i~vd~Ir~l~~~~~~~~~~~~~~Kvv 94 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-LSKSEFLSAINKLYFSSFVQSQKKIL 94 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-CCHHHHHHHHHHhccCCcccCCceEE
Confidence 34578999999999999999999998721 233343 221 23456777666542 55799
Q ss_pred EEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCC
Q 011254 309 VVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRP 388 (490)
Q Consensus 309 ~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRp 388 (490)
+||++|.+- ....+.||..++.. ++..++|++|+.++.|-|++..
T Consensus 95 II~~~e~m~------------------------------~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~S- 139 (299)
T PRK07132 95 IIKNIEKTS------------------------------NSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVS- 139 (299)
T ss_pred EEecccccC------------------------------HHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHh-
Confidence 999998762 23456789998874 3458888888888999999887
Q ss_pred CceeeEEEeCCCCHHHHHHHHH
Q 011254 389 GRMDVHIHMSYCTSCGFKMLAS 410 (490)
Q Consensus 389 GR~d~~I~~~~p~~~~r~~L~~ 410 (490)
|. ..++|..++.++....+.
T Consensus 140 -Rc-~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 140 -RC-QVFNVKEPDQQKILAKLL 159 (299)
T ss_pred -Ce-EEEECCCCCHHHHHHHHH
Confidence 65 669999999888776554
No 235
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.37 E-value=1.8e-06 Score=93.54 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=67.0
Q ss_pred CccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCChH
Q 011254 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGNM 293 (490)
Q Consensus 217 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~ 293 (490)
++++++|.....+.+.+.+..... .+..+||+|++||||+++|++|.... +.+++.++|..+.. .
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~-----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA-----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-S 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-H
Confidence 578899999888888888775422 24579999999999999999999874 57999999998743 2
Q ss_pred HHH-HHHH-----------------hccCCeEEEEeccchhh
Q 011254 294 ELR-NLLI-----------------ATENKSILVVEDIDCSI 317 (490)
Q Consensus 294 ~l~-~l~~-----------------~~~~~sIl~iDdiD~l~ 317 (490)
.+. .+|. ....+..|||||||.+-
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~ 294 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELP 294 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCC
Confidence 222 2222 12346789999999883
No 236
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.37 E-value=2.7e-06 Score=84.40 Aligned_cols=159 Identities=17% Similarity=0.198 Sum_probs=99.1
Q ss_pred ccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCc------EEEE
Q 011254 211 NLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD------VYDL 284 (490)
Q Consensus 211 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~------~~~l 284 (490)
+-..|.++++|+++.+....+.+.. ..+.- ...|+|||||||||+.+.|.|..+-.+ +..+
T Consensus 33 ekyrP~~l~dv~~~~ei~st~~~~~-----------~~~~l--Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lel 99 (360)
T KOG0990|consen 33 EKYRPPFLGIVIKQEPIWSTENRYS-----------GMPGL--PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLEL 99 (360)
T ss_pred cCCCCchhhhHhcCCchhhHHHHhc-----------cCCCC--CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHh
Confidence 4678899999999987766664431 11111 278999999999999999999987442 2234
Q ss_pred eccccCC---hHHHHHHHHhcc---------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHH
Q 011254 285 ELTNLRG---NMELRNLLIATE---------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLS 352 (490)
Q Consensus 285 ~~s~~~~---~~~l~~l~~~~~---------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 352 (490)
+.++-.+ ...-...|..+. ..-.+++||.|++.. ...+
T Consensus 100 naSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~------------------------------~AQn 149 (360)
T KOG0990|consen 100 NASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR------------------------------DAQN 149 (360)
T ss_pred hccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH------------------------------HHHH
Confidence 4443322 122223444443 456899999998832 1122
Q ss_pred HHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCC
Q 011254 353 GMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHP 419 (490)
Q Consensus 353 ~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~ 419 (490)
.|-..+..... +.-++.-+|++..+.|++.. |+- ...|...+..+-....++....+...
T Consensus 150 ALRRviek~t~----n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~ 209 (360)
T KOG0990|consen 150 ALRRVIEKYTA----NTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKE 209 (360)
T ss_pred HHHHHHHHhcc----ceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhh
Confidence 23334444322 34455789999999999987 663 34566666666666666666554333
No 237
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.35 E-value=4.7e-06 Score=81.21 Aligned_cols=163 Identities=17% Similarity=0.269 Sum_probs=109.8
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-cCcE---------
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDV--------- 281 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~~~~--------- 281 (490)
...|.+|+.+...++....+..... .. .. ..+|+|||+|+||-|.+-|+-+++ |..+
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~-----~~-------d~-PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t 72 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSS-----TG-------DF-PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT 72 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhcc-----cC-------CC-CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE
Confidence 3467889999888887776654332 10 01 258999999999999999999987 2111
Q ss_pred -------------------EEEeccccCCh--HHHHHHHHhcc-----------CCeEEEEeccchhhhhhhhHhhhhhc
Q 011254 282 -------------------YDLELTNLRGN--MELRNLLIATE-----------NKSILVVEDIDCSIELQDRFAKAKAT 329 (490)
Q Consensus 282 -------------------~~l~~s~~~~~--~~l~~l~~~~~-----------~~sIl~iDdiD~l~~~~~r~~~~~~~ 329 (490)
..++.++.... --+++++.... .--+++|-|+|.+-.
T Consensus 73 ~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~----------- 141 (351)
T KOG2035|consen 73 FTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR----------- 141 (351)
T ss_pred EecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH-----------
Confidence 12233333211 22455555432 125899999998731
Q ss_pred ccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHH
Q 011254 330 NAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLA 409 (490)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~ 409 (490)
.....|-..|+-..++|. +|+.+|...++-+++.. |. ..|.+|.|+.++...++
T Consensus 142 -------------------dAQ~aLRRTMEkYs~~~R----lIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl 195 (351)
T KOG2035|consen 142 -------------------DAQHALRRTMEKYSSNCR----LILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVL 195 (351)
T ss_pred -------------------HHHHHHHHHHHHHhcCce----EEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHH
Confidence 122345556666655554 77889999999899987 65 66999999999999999
Q ss_pred HHhhCCCCCCchHHH
Q 011254 410 SSYLGITEHPLFLEV 424 (490)
Q Consensus 410 ~~~l~~~~~~l~~~i 424 (490)
.+.+..++..+..++
T Consensus 196 ~~v~~kE~l~lp~~~ 210 (351)
T KOG2035|consen 196 SKVLKKEGLQLPKEL 210 (351)
T ss_pred HHHHHHhcccCcHHH
Confidence 988887766655443
No 238
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.33 E-value=1e-06 Score=91.04 Aligned_cols=96 Identities=17% Similarity=0.345 Sum_probs=60.5
Q ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHhccCc-EEEEecccc-----------C-ChHHHHHHHHhccCCe-EEEEeccch
Q 011254 250 KAWKRGYLLYGPPGTGKSSLIAAMANYLNFD-VYDLELTNL-----------R-GNMELRNLLIATENKS-ILVVEDIDC 315 (490)
Q Consensus 250 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-~~~l~~s~~-----------~-~~~~l~~l~~~~~~~s-Il~iDdiD~ 315 (490)
.+.++|++||||+|+|||+|.-...+.+... -..+-...+ . ....+..+.....+.+ +|+|||+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V 138 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQV 138 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeec
Confidence 5678999999999999999999998887431 011111111 1 2223334444444444 999999974
Q ss_pred hhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCC
Q 011254 316 SIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHK 378 (490)
Q Consensus 316 l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~ 378 (490)
- +-.....+..|+..+ +. .++++|+|+|++
T Consensus 139 ~---------------------------DiaDAmil~rLf~~l---~~---~gvvlVaTSN~~ 168 (362)
T PF03969_consen 139 T---------------------------DIADAMILKRLFEAL---FK---RGVVLVATSNRP 168 (362)
T ss_pred c---------------------------chhHHHHHHHHHHHH---HH---CCCEEEecCCCC
Confidence 3 222355667776654 32 348999999963
No 239
>PF05729 NACHT: NACHT domain
Probab=98.31 E-value=5.3e-06 Score=75.08 Aligned_cols=131 Identities=18% Similarity=0.288 Sum_probs=71.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccC---------cEEEEeccccCCh---HHHHHHH------------------Hhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNF---------DVYDLELTNLRGN---MELRNLL------------------IATE 303 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~---------~~~~l~~s~~~~~---~~l~~l~------------------~~~~ 303 (490)
|-++|+|+||+|||++++.++..+.. -++.+.+.+.... ..+..++ ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 34789999999999999999987621 1223333333111 1222222 1234
Q ss_pred CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHH-HHHHhcc-cccCCCCcEEEEEecCCCC-C
Q 011254 304 NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSG-MLNFIDG-LWSSCGDERIIIFTTNHKD-R 380 (490)
Q Consensus 304 ~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~-LL~~idg-l~s~~~~~~iiI~TTN~~~-~ 380 (490)
.+.+|+||.+|.+...... .....+.. |...+.. +.. .-.++|.+..+.. .
T Consensus 81 ~~~llilDglDE~~~~~~~-----------------------~~~~~~~~~l~~l~~~~~~~---~~~liit~r~~~~~~ 134 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS-----------------------QERQRLLDLLSQLLPQALPP---GVKLIITSRPRAFPD 134 (166)
T ss_pred CceEEEEechHhcccchhh-----------------------hHHHHHHHHHHHHhhhccCC---CCeEEEEEcCChHHH
Confidence 5789999999987531110 00111222 2233333 111 1233433332221 2
Q ss_pred CCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 381 LDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 381 LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
+...+.. ...+++...+.++.++++++|+.
T Consensus 135 ~~~~~~~----~~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 135 LRRRLKQ----AQILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred HHHhcCC----CcEEEECCCCHHHHHHHHHHHhh
Confidence 2222222 15689999999999999999885
No 240
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.26 E-value=1.3e-05 Score=85.99 Aligned_cols=172 Identities=15% Similarity=0.175 Sum_probs=100.5
Q ss_pred ccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCChHH
Q 011254 218 FDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGNME 294 (490)
Q Consensus 218 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~ 294 (490)
+.+++|....-+.+.+.+.... +....+|+.|++||||+++|+++.... +.+++.++|+.+.. ..
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~-~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLS-----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK-DL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHHHh-----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH-HH
Confidence 5567777666555555544221 224569999999999999999999876 46899999998833 33
Q ss_pred HHHHH-Hh-----------------ccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHH
Q 011254 295 LRNLL-IA-----------------TENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLN 356 (490)
Q Consensus 295 l~~l~-~~-----------------~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 356 (490)
+...+ .. ...+..|||||||.+.. .....|+.
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~------------------------------~~q~~L~~ 254 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL------------------------------DVQTRLLR 254 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH------------------------------HHHHHHHH
Confidence 33332 21 22457899999998732 12234555
Q ss_pred Hhcccc--cCCC-----CcEEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHhhCCC---
Q 011254 357 FIDGLW--SSCG-----DERIIIFTTNHK-------DRLDPAFLRPGRM-DVHIHMSYCTS--CGFKMLASSYLGIT--- 416 (490)
Q Consensus 357 ~idgl~--s~~~-----~~~iiI~TTN~~-------~~LD~aLlRpGR~-d~~I~~~~p~~--~~r~~L~~~~l~~~--- 416 (490)
+++.-. ...+ -++-||+||+.. ..+.+.|.. |+ ..+|++|.... +....|+..|+...
T Consensus 255 ~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~ 332 (469)
T PRK10923 255 VLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARE 332 (469)
T ss_pred HHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHH
Confidence 554211 1011 124567777642 245556665 66 45666665543 34555777666421
Q ss_pred ----CCCchHHHHHhhhccCC
Q 011254 417 ----EHPLFLEVEGLIEKAKV 433 (490)
Q Consensus 417 ----~~~l~~~i~~l~~~~~~ 433 (490)
...+.++....+....+
T Consensus 333 ~~~~~~~~~~~a~~~L~~~~w 353 (469)
T PRK10923 333 LGVEAKLLHPETEAALTRLAW 353 (469)
T ss_pred cCCCCCCcCHHHHHHHHhCCC
Confidence 11244455555555544
No 241
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.22 E-value=5.7e-06 Score=93.53 Aligned_cols=173 Identities=21% Similarity=0.256 Sum_probs=111.4
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHc-HHHHHHhCCCC-Cc-ceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccc
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKR-KEFYRNVGKAW-KR-GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTN 288 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~-~~~y~~~g~~~-~r-g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~ 288 (490)
-..|.....+.+.......+.+.+..+-.. +.-|...+... .. ..|++||||.|||+.+++.|.++|+.++..|.+.
T Consensus 313 k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~ 392 (871)
T KOG1968|consen 313 KYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASD 392 (871)
T ss_pred ccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCccc
Confidence 345566677777777766666666554111 11122211111 12 3599999999999999999999999999999998
Q ss_pred cCChHHHHHHHHhcc--------------------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchh
Q 011254 289 LRGNMELRNLLIATE--------------------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQ 348 (490)
Q Consensus 289 ~~~~~~l~~l~~~~~--------------------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (490)
..++..+...+..+. ...||++||+|.+.+ .+|.. -
T Consensus 393 ~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~dRg~-----------------------v 448 (871)
T KOG1968|consen 393 VRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-EDRGG-----------------------V 448 (871)
T ss_pred cccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hhhhh-----------------------H
Confidence 877766665554421 124999999998865 33321 1
Q ss_pred hHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCc-cccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc
Q 011254 349 VTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDP-AFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPL 420 (490)
Q Consensus 349 ~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~-aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l 420 (490)
.-+++|... + .+-||+|+|...-... ++. |-+.-|+|+.|+..++.--+..++..+...+
T Consensus 449 ~~l~~l~~k-----s----~~Piv~~cndr~~p~sr~~~---~~~~~l~f~kP~~~~i~~ri~si~~se~~ki 509 (871)
T KOG1968|consen 449 SKLSSLCKK-----S----SRPLVCTCNDRNLPKSRALS---RACSDLRFSKPSSELIRSRIMSICKSEGIKI 509 (871)
T ss_pred HHHHHHHHh-----c----cCCeEEEecCCCCccccchh---hhcceeeecCCcHHHHHhhhhhhhcccceec
Confidence 123334331 1 2568889997766554 344 4446799999999998766666665543333
No 242
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.22 E-value=8.7e-06 Score=87.66 Aligned_cols=161 Identities=20% Similarity=0.260 Sum_probs=91.5
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhC-CCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEec-------ccc-C
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL-------TNL-R 290 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~-------s~~-~ 290 (490)
+|.+.+++|+.|.-. .|-.....+.+.| ..-.-.+||+|-||||||-|.+.+++-+-..+|.--- +.. .
T Consensus 430 sIye~edvKkglLLq--LfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQ--LFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHH--HhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 445667777766432 2322222233322 1111249999999999999999999988666654221 110 1
Q ss_pred ChHHHHHHHHhc-----cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhc------
Q 011254 291 GNMELRNLLIAT-----ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFID------ 359 (490)
Q Consensus 291 ~~~~l~~l~~~~-----~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~id------ 359 (490)
.+.+-++++.+. +...|-+|||+|.+-. .+-+.|+..|+
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d------------------------------StrSvLhEvMEQQTvSI 557 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSD------------------------------STRSVLHEVMEQQTLSI 557 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhhH------------------------------HHHHHHHHHHHHhhhhH
Confidence 122233333332 3678999999998843 11223333333
Q ss_pred ---ccccCCCCcEEEEEecCCCC-------------CCCccccCCCceeeEE-EeCCCCHHHHHHHHHHhhC
Q 011254 360 ---GLWSSCGDERIIIFTTNHKD-------------RLDPAFLRPGRMDVHI-HMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 360 ---gl~s~~~~~~iiI~TTN~~~-------------~LD~aLlRpGR~d~~I-~~~~p~~~~r~~L~~~~l~ 414 (490)
|+-.+-+..--|+++.|..+ .|+|.|++ |||... -+..|++..=+.|..+...
T Consensus 558 AKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 558 AKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred hhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHH
Confidence 22111111233888888533 47899999 999865 4477777754555554443
No 243
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.21 E-value=1.8e-05 Score=83.77 Aligned_cols=93 Identities=22% Similarity=0.270 Sum_probs=67.9
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccc
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTN 288 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~ 288 (490)
+.++.+|++|+|....-.++++.++.+ -+-.-.+||.|.+||||..+|++|-+.. +-||+.+||..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 456678999999988877776666533 2335679999999999999999999876 67999999998
Q ss_pred cCChHHHH-HHH------------------HhccCCeEEEEeccchh
Q 011254 289 LRGNMELR-NLL------------------IATENKSILVVEDIDCS 316 (490)
Q Consensus 289 ~~~~~~l~-~l~------------------~~~~~~sIl~iDdiD~l 316 (490)
+-. .=|. .+| .++.+..-||+|||-.+
T Consensus 307 iPe-~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem 352 (560)
T COG3829 307 IPE-TLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM 352 (560)
T ss_pred CCH-HHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC
Confidence 821 1111 122 11234578999999765
No 244
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.20 E-value=2.3e-05 Score=83.37 Aligned_cols=88 Identities=20% Similarity=0.210 Sum_probs=59.7
Q ss_pred ccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCChHH
Q 011254 218 FDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGNME 294 (490)
Q Consensus 218 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~ 294 (490)
+..+++.....+.+...+.... .....++++|++||||+++|+++.... +.+++.++|..+.. ..
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~~ 205 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKIA-----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-NL 205 (445)
T ss_pred ccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-HH
Confidence 4456666555555555443221 223568999999999999999998765 46899999998743 33
Q ss_pred HHHHHHh------------------ccCCeEEEEeccchhh
Q 011254 295 LRNLLIA------------------TENKSILVVEDIDCSI 317 (490)
Q Consensus 295 l~~l~~~------------------~~~~sIl~iDdiD~l~ 317 (490)
+...+.. ...++.|||||||.+-
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~ 246 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP 246 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC
Confidence 3333211 1346789999999883
No 245
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.20 E-value=2e-05 Score=70.76 Aligned_cols=30 Identities=30% Similarity=0.562 Sum_probs=24.1
Q ss_pred eeeeCCCCCcHHHHHHHHHHhc---cCcEEEEe
Q 011254 256 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 285 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 285 (490)
++++||||+|||+++.+++..+ +.++..++
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 6899999999999999999887 34454443
No 246
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.16 E-value=2.4e-05 Score=92.80 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=45.7
Q ss_pred ceecccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC
Q 011254 207 WQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF 279 (490)
Q Consensus 207 w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~ 279 (490)
|......++..+++++|.++..++|...+. .+....+-+-++||+|+||||||+++++.+..
T Consensus 172 ~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 172 LGKLNLTPSNDFEDFVGIEDHIAKMSSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred HHhhccccCcccccccchHHHHHHHHHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 344445566788999998888777765543 12233566889999999999999999987743
No 247
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.15 E-value=2.7e-05 Score=83.29 Aligned_cols=171 Identities=16% Similarity=0.210 Sum_probs=99.8
Q ss_pred cccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCChHHH
Q 011254 219 DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGNMEL 295 (490)
Q Consensus 219 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l 295 (490)
..+++....-.++...+.... .....+++.|.+||||+++|+++.... +.+++.++|..+. ...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a-----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~-~~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS-----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIP-KDLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh-----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCC-HHHH
Confidence 346666666666655554321 223568999999999999999998774 5689999998873 3333
Q ss_pred HHHH-H-----------------hccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHH
Q 011254 296 RNLL-I-----------------ATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNF 357 (490)
Q Consensus 296 ~~l~-~-----------------~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 357 (490)
...+ . ....++.|||||||.+-. .....|+.+
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~------------------------------~~q~~ll~~ 251 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL------------------------------DAQTRLLRV 251 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH------------------------------HHHHHHHHH
Confidence 3333 1 122467899999998732 122345555
Q ss_pred hcc-cccCCC------CcEEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCC--HHHHHHHHHHhhCCC----
Q 011254 358 IDG-LWSSCG------DERIIIFTTNHK-------DRLDPAFLRPGRMD-VHIHMSYCT--SCGFKMLASSYLGIT---- 416 (490)
Q Consensus 358 idg-l~s~~~------~~~iiI~TTN~~-------~~LD~aLlRpGR~d-~~I~~~~p~--~~~r~~L~~~~l~~~---- 416 (490)
++. .....+ -++-||+||+.. ..+.+.|.. |+. .+|++|... .++...|+..|+...
T Consensus 252 l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~ 329 (463)
T TIGR01818 252 LADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAAREL 329 (463)
T ss_pred HhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHh
Confidence 542 111001 124466777642 233344444 443 477877766 456777777766432
Q ss_pred C---CCchHHHHHhhhccCC
Q 011254 417 E---HPLFLEVEGLIEKAKV 433 (490)
Q Consensus 417 ~---~~l~~~i~~l~~~~~~ 433 (490)
+ ..+.++....+....+
T Consensus 330 ~~~~~~~~~~a~~~L~~~~w 349 (463)
T TIGR01818 330 DVEPKLLDPEALERLKQLRW 349 (463)
T ss_pred CCCCCCcCHHHHHHHHhCCC
Confidence 1 2344555555555554
No 248
>PHA02774 E1; Provisional
Probab=98.14 E-value=1.8e-05 Score=85.13 Aligned_cols=58 Identities=26% Similarity=0.448 Sum_probs=43.4
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEE-EeccccCChHHHHHHHHhccCCeEEEEecc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD-LELTNLRGNMELRNLLIATENKSILVVEDI 313 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-l~~s~~~~~~~l~~l~~~~~~~sIl~iDdi 313 (490)
|+|.++.++||||||||||+++.+|++.++..++. ++..+ . -.+..+...-|++|||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~----FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---H----FWLQPLADAKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---c----cccchhccCCEEEEecC
Confidence 56667889999999999999999999999766644 55321 1 12344455679999998
No 249
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=4.6e-05 Score=79.30 Aligned_cols=197 Identities=18% Similarity=0.106 Sum_probs=117.6
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-----cCcEEEEeccccC
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELTNLR 290 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~s~~~ 290 (490)
..=+++.|-+.....+.+.+...+.. .-++++.+.|-||||||.+..-+-..+ ....+.++|.++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~ 217 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLT 217 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecccc
Confidence 33467777776666665555444332 235678999999999998888665544 2345778888752
Q ss_pred Ch---------------------HHHHHHHHhc----cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCC
Q 011254 291 GN---------------------MELRNLLIAT----ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQ 345 (490)
Q Consensus 291 ~~---------------------~~l~~l~~~~----~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 345 (490)
.. .+..+.|... ..+-+||+||+|.++. +
T Consensus 218 ~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~t---r----------------------- 271 (529)
T KOG2227|consen 218 EASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLIT---R----------------------- 271 (529)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhh---c-----------------------
Confidence 21 1222333222 2367999999999963 1
Q ss_pred chhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCcccc----CCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCch
Q 011254 346 VPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFL----RPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLF 421 (490)
Q Consensus 346 ~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLl----RpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~ 421 (490)
.+. .|-.+..+..-.+..+++|+..|..+.=|..|. |-+--...+.|+..+.++..+|+..-+.......+
T Consensus 272 -~~~----vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~ 346 (529)
T KOG2227|consen 272 -SQT----VLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIF 346 (529)
T ss_pred -ccc----eeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccccccc
Confidence 011 122223222334456889999998876665553 22344567899999999999999988865432221
Q ss_pred --HHHHHhhhccCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 011254 422 --LEVEGLIEKAKVTPADVAEQLMRNEVPEIALRELIQFLEIK 462 (490)
Q Consensus 422 --~~i~~l~~~~~~tpa~i~~~l~~~~~~~~al~~l~~~l~~~ 462 (490)
..++-.+.++. ..++|...||+-...++|..
T Consensus 347 ~~~Aie~~ArKva----------a~SGDlRkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 347 LNAAIELCARKVA----------APSGDLRKALDVCRRAIEIA 379 (529)
T ss_pred chHHHHHHHHHhc----------cCchhHHHHHHHHHHHHHHH
Confidence 12222222211 12567777777666555443
No 250
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.12 E-value=1.1e-05 Score=88.22 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=84.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccC--cEEEEeccc----cCChHHHHHHHHh-----------ccCCeEEEEeccchh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELTN----LRGNMELRNLLIA-----------TENKSILVVEDIDCS 316 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~--~~~~l~~s~----~~~~~~l~~l~~~-----------~~~~sIl~iDdiD~l 316 (490)
.|+||-|++|||||+++++++..+.. +|..+..+. +.+.-+|...+.. ...+.||||||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 68999999999999999999999854 776665433 2333444444432 224689999999654
Q ss_pred hhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhc---------ccccCCCCcEEEEEecCCC---CCCCcc
Q 011254 317 IELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFID---------GLWSSCGDERIIIFTTNHK---DRLDPA 384 (490)
Q Consensus 317 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~id---------gl~s~~~~~~iiI~TTN~~---~~LD~a 384 (490)
...+++.|+..|+ |..-......++|+|-|.. ..|.++
T Consensus 106 ------------------------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~ 155 (584)
T PRK13406 106 ------------------------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAA 155 (584)
T ss_pred ------------------------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHH
Confidence 3457788888885 2222223446778875433 468999
Q ss_pred ccCCCceeeEEEeCCCCHHH
Q 011254 385 FLRPGRMDVHIHMSYCTSCG 404 (490)
Q Consensus 385 LlRpGR~d~~I~~~~p~~~~ 404 (490)
++. ||+++|.+++++..+
T Consensus 156 lLD--Rf~l~v~v~~~~~~~ 173 (584)
T PRK13406 156 LAD--RLAFHLDLDGLALRD 173 (584)
T ss_pred hHh--heEEEEEcCCCChHH
Confidence 999 999999999998764
No 251
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.11 E-value=4.9e-05 Score=75.71 Aligned_cols=147 Identities=21% Similarity=0.222 Sum_probs=76.9
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHh--cc--Cc-EEEEeccccCC------------------------hHHHHHHHHh-
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANY--LN--FD-VYDLELTNLRG------------------------NMELRNLLIA- 301 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~--l~--~~-~~~l~~s~~~~------------------------~~~l~~l~~~- 301 (490)
..+-+.|+|++|+|||+||+.+++. .. ++ ++-++++...+ ...+...+..
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 3456899999999999999999987 32 22 23334333211 1111222221
Q ss_pred c-cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCC
Q 011254 302 T-ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDR 380 (490)
Q Consensus 302 ~-~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~ 380 (490)
. ..+++|||||++.... +..+...+-.. ..+.-||.||....-
T Consensus 98 L~~~~~LlVlDdv~~~~~--------------------------------~~~l~~~~~~~----~~~~kilvTTR~~~v 141 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEED--------------------------------LEELREPLPSF----SSGSKILVTTRDRSV 141 (287)
T ss_dssp HCCTSEEEEEEEE-SHHH--------------------------------H-------HCH----HSS-EEEEEESCGGG
T ss_pred hccccceeeeeeeccccc--------------------------------ccccccccccc----ccccccccccccccc
Confidence 1 2489999999975421 11122221111 111345567765322
Q ss_pred CCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCC----CCchHHHHHhhhccCCCHHHH
Q 011254 381 LDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITE----HPLFLEVEGLIEKAKVTPADV 438 (490)
Q Consensus 381 LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~----~~l~~~i~~l~~~~~~tpa~i 438 (490)
. ... +.-+..++++..+.++-.+|+..+.+... ..+.+...+++...+-.|--+
T Consensus 142 ~-~~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal 199 (287)
T PF00931_consen 142 A-GSL---GGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLAL 199 (287)
T ss_dssp G-TTH---HSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHH
T ss_pred c-ccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 111 11157899999999999999998876543 223344556666666666444
No 252
>PHA00729 NTP-binding motif containing protein
Probab=98.07 E-value=5.9e-06 Score=79.51 Aligned_cols=27 Identities=19% Similarity=0.474 Sum_probs=24.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcE
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDV 281 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~ 281 (490)
.++|+||||||||+||.+||+.++..+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 699999999999999999999986444
No 253
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.06 E-value=2.2e-05 Score=83.74 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=47.8
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCChHHHHHH-HHh-----------------ccCCeEEEEe
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGNMELRNL-LIA-----------------TENKSILVVE 311 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l~~l-~~~-----------------~~~~sIl~iD 311 (490)
...+|++|++||||+++|+++.... +.+++.++|..+.. ..+... |.. ...+.+||||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 244 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLD 244 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEe
Confidence 3569999999999999999998764 57899999998743 333332 221 1245799999
Q ss_pred ccchhh
Q 011254 312 DIDCSI 317 (490)
Q Consensus 312 diD~l~ 317 (490)
|||.+-
T Consensus 245 ~i~~l~ 250 (457)
T PRK11361 245 EIGEMP 250 (457)
T ss_pred chhhCC
Confidence 999883
No 254
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.04 E-value=3.3e-05 Score=89.43 Aligned_cols=127 Identities=24% Similarity=0.336 Sum_probs=90.6
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHHH--------------------HhccCCeEEEEec
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNLL--------------------IATENKSILVVED 312 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l~--------------------~~~~~~sIl~iDd 312 (490)
.+++||-|.||.|||+|+.|+|+..|-.++.+++++- .+|..+| ..+.++.-+++||
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQ---TdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDE 1619 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQ---TDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDE 1619 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeecccc---chHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeeh
Confidence 4689999999999999999999999999999998864 3344444 3344667888999
Q ss_pred cchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccc----------cCCCCcEEEEEecCCCC---
Q 011254 313 IDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLW----------SSCGDERIIIFTTNHKD--- 379 (490)
Q Consensus 313 iD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~----------s~~~~~~iiI~TTN~~~--- 379 (490)
+.-. ++..+.+|-.++|.-. -.|-.+..|++|-|.-+
T Consensus 1620 iNLa------------------------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qgg 1669 (4600)
T COG5271 1620 INLA------------------------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGG 1669 (4600)
T ss_pred hhhh------------------------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCC
Confidence 8532 2445555555555211 11223456666767543
Q ss_pred ---CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCC
Q 011254 380 ---RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGI 415 (490)
Q Consensus 380 ---~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~ 415 (490)
.|+..++. || ..|.|.-.+......|+...+..
T Consensus 1670 GRKgLPkSF~n--RF-svV~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1670 GRKGLPKSFLN--RF-SVVKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred CcccCCHHHhh--hh-heEEecccccchHHHHHHhhCCc
Confidence 58999998 99 56889888888888888777653
No 255
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.03 E-value=7e-05 Score=74.76 Aligned_cols=155 Identities=15% Similarity=0.191 Sum_probs=84.5
Q ss_pred cChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---------cCcEEEEeccccCChH
Q 011254 223 MDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELTNLRGNM 293 (490)
Q Consensus 223 g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---------~~~~~~l~~s~~~~~~ 293 (490)
|.+..+ ++.+.+...+..|. ..-..++||+|++|.|||++++..+... ..|++.+....--+..
T Consensus 38 gY~~A~-~~L~~L~~Ll~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 38 GYPRAK-EALDRLEELLEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred cCHHHH-HHHHHHHHHHhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 334333 44456665555543 2233579999999999999999999754 2467777654442322
Q ss_pred HHHHHH------------------------HhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhh
Q 011254 294 ELRNLL------------------------IATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQV 349 (490)
Q Consensus 294 ~l~~l~------------------------~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (490)
.+-..+ ...-+.-+|+|||++.++.-+.+ . +
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~-----------------------~-q- 165 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYR-----------------------K-Q- 165 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHH-----------------------H-H-
Confidence 222111 11224569999999987641111 1 1
Q ss_pred HHHHHHHHhcccccCCCCcEEEEEecCCCC--CCCccccCCCceeeEEEeCCCC-HHHHHHHHHHhhC
Q 011254 350 TLSGMLNFIDGLWSSCGDERIIIFTTNHKD--RLDPAFLRPGRMDVHIHMSYCT-SCGFKMLASSYLG 414 (490)
Q Consensus 350 ~ls~LL~~idgl~s~~~~~~iiI~TTN~~~--~LD~aLlRpGR~d~~I~~~~p~-~~~r~~L~~~~l~ 414 (490)
..+||.+..+.....=.++.|+|-.-.. .-|+-+.+ ||+. +.+|.-. .+++..|+..+-.
T Consensus 166 --r~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~ 228 (302)
T PF05621_consen 166 --REFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFER 228 (302)
T ss_pred --HHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHH
Confidence 2233443333222222244455443222 33777777 9965 4555433 3456666665543
No 256
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.96 E-value=2.3e-05 Score=75.37 Aligned_cols=63 Identities=22% Similarity=0.387 Sum_probs=38.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccc-------------c---CChHHHHHHHHhc----cCCeEEEEecc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTN-------------L---RGNMELRNLLIAT----ENKSILVVEDI 313 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~-------------~---~~~~~l~~l~~~~----~~~sIl~iDdi 313 (490)
.-+|+||+||+|||++|+.+++. .-++..+.+. + ..-+.+...+... ....+||||.|
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDsI 90 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDNI 90 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEecH
Confidence 44999999999999999999842 1222222211 0 1112333333322 24679999999
Q ss_pred chhhh
Q 011254 314 DCSIE 318 (490)
Q Consensus 314 D~l~~ 318 (490)
+.+..
T Consensus 91 ~~l~~ 95 (220)
T TIGR01618 91 SALQN 95 (220)
T ss_pred HHHHH
Confidence 98743
No 257
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.95 E-value=6e-06 Score=71.33 Aligned_cols=31 Identities=39% Similarity=0.741 Sum_probs=27.8
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
|++.||||+||||+++.+|..+|++++.++-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999988876653
No 258
>PRK15115 response regulator GlrR; Provisional
Probab=97.92 E-value=4.9e-05 Score=80.84 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=47.9
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCChHHHHHH-HH-----------------hccCCeEEEEe
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGNMELRNL-LI-----------------ATENKSILVVE 311 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l~~l-~~-----------------~~~~~sIl~iD 311 (490)
...++|+|++||||+++|+++.... +.+++.++|..+.. ..+... |. ....+..||||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEE
Confidence 3468999999999999999998875 47999999998733 333322 21 12245789999
Q ss_pred ccchhh
Q 011254 312 DIDCSI 317 (490)
Q Consensus 312 diD~l~ 317 (490)
|||.+-
T Consensus 236 ~i~~l~ 241 (444)
T PRK15115 236 EIGDMP 241 (444)
T ss_pred ccccCC
Confidence 999883
No 259
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.92 E-value=3e-05 Score=76.59 Aligned_cols=91 Identities=20% Similarity=0.207 Sum_probs=60.6
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-----cEEE-----Eecccc
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-----DVYD-----LELTNL 289 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-----~~~~-----l~~s~~ 289 (490)
.|.|+.-+++.|+..+..++.++. -..|--+=|||+|||||+..++.||+.+-. +++. .++..-
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 578999999999999998887653 111223457999999999999999998722 2211 111111
Q ss_pred C----ChHHHHHHHHhc---cCCeEEEEeccchh
Q 011254 290 R----GNMELRNLLIAT---ENKSILVVEDIDCS 316 (490)
Q Consensus 290 ~----~~~~l~~l~~~~---~~~sIl~iDdiD~l 316 (490)
. -..+|+..+... -.++|.++||+|.+
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 1 122344444333 36899999999988
No 260
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.90 E-value=1.7e-05 Score=85.33 Aligned_cols=67 Identities=21% Similarity=0.317 Sum_probs=51.8
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-cCcEEEEec
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLEL 286 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l~~ 286 (490)
....-|+++.|.++.+++|++.+...... + ...++.++|.||||+|||+|+++||+.+ .+++|.+..
T Consensus 70 ~ry~fF~d~yGlee~ieriv~~l~~Aa~g------l-~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 70 KRYPAFEEFYGMEEAIEQIVSYFRHAAQG------L-EEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred ccccchhcccCcHHHHHHHHHHHHHHHHh------c-CCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 44456999999999999999877543332 1 2234678899999999999999999987 468887754
No 261
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.89 E-value=7.8e-05 Score=70.96 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=32.0
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTN 288 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~ 288 (490)
|++..+-++++||||||||+++..+|... +..++.++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 56667779999999999999999988654 56677777654
No 262
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.88 E-value=3.6e-05 Score=72.68 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=59.7
Q ss_pred eeeeCCCCCcHHHHHHHH-HHh---ccCcEEEEeccccC-----C---------------------hHHHHHHHHhccCC
Q 011254 256 YLLYGPPGTGKSSLIAAM-ANY---LNFDVYDLELTNLR-----G---------------------NMELRNLLIATENK 305 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~ai-A~~---l~~~~~~l~~s~~~-----~---------------------~~~l~~l~~~~~~~ 305 (490)
+|++|.||+|||+.|-.. ... -|.+++. +...+. . ...+. .+...+..
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPD-DWRKLPKG 80 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHH-HHTTSGTT
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhh-hhcccCCC
Confidence 688999999999988665 332 2666665 433220 0 01111 12223478
Q ss_pred eEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccc
Q 011254 306 SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAF 385 (490)
Q Consensus 306 sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aL 385 (490)
+||||||+...++.+.... ......++++.... -.+.-||++|-++..||+.+
T Consensus 81 ~liviDEa~~~~~~r~~~~------------------------~~~~~~~~~l~~hR---h~g~diiliTQ~~~~id~~i 133 (193)
T PF05707_consen 81 SLIVIDEAQNFFPSRSWKG------------------------KKVPEIIEFLAQHR---HYGWDIILITQSPSQIDKFI 133 (193)
T ss_dssp -EEEETTGGGTSB---T-T----------------------------HHHHGGGGCC---CTT-EEEEEES-GGGB-HHH
T ss_pred cEEEEECChhhcCCCcccc------------------------ccchHHHHHHHHhC---cCCcEEEEEeCCHHHHhHHH
Confidence 9999999998876322210 01122334443322 23467899999999999998
Q ss_pred cCCCceeeEEEeCCC
Q 011254 386 LRPGRMDVHIHMSYC 400 (490)
Q Consensus 386 lRpGR~d~~I~~~~p 400 (490)
++ .++.++++..+
T Consensus 134 r~--lve~~~~~~k~ 146 (193)
T PF05707_consen 134 RD--LVEYHYHCRKL 146 (193)
T ss_dssp HC--CEEEEEEEEE-
T ss_pred HH--HHheEEEEEee
Confidence 87 89999887654
No 263
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.87 E-value=6.7e-05 Score=86.39 Aligned_cols=139 Identities=21% Similarity=0.256 Sum_probs=87.8
Q ss_pred CCCcceeeeCCCCCcHHH-HHHHHHHhccCcEEEEeccccCChH-HHHHHHHhcc----------------CCeEEEEec
Q 011254 251 AWKRGYLLYGPPGTGKSS-LIAAMANYLNFDVYDLELTNLRGNM-ELRNLLIATE----------------NKSILVVED 312 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~-la~aiA~~l~~~~~~l~~s~~~~~~-~l~~l~~~~~----------------~~sIl~iDd 312 (490)
.-.|||+++||||+|||+ +.-++-+++-+++..++.+.-.... .|.-+-..+. ..-|||.||
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDe 1571 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDE 1571 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeec
Confidence 346899999999999998 5678888999999999988765444 4443333221 125899999
Q ss_pred cchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCC------CcEEEEEecCCCCCC-----
Q 011254 313 IDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCG------DERIIIFTTNHKDRL----- 381 (490)
Q Consensus 313 iD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~------~~~iiI~TTN~~~~L----- 381 (490)
|. + +. .+. . ..+..-..+.+| -.-.|+|++.- .++++++++|.+.+.
T Consensus 1572 In-L-p~-~~~----------y--------~~~~vI~FlR~l-~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~ 1629 (3164)
T COG5245 1572 IN-L-PY-GFE----------Y--------YPPTVIVFLRPL-VERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKY 1629 (3164)
T ss_pred cC-C-cc-ccc----------c--------CCCceEEeeHHH-HHhcccccchhhhHhhhcceEEEccCCCCCCcccCcc
Confidence 98 3 10 000 0 001111111122 22356766432 348889999987642
Q ss_pred CccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 382 DPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 382 D~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
...++| | ...|++.||.-.....|...++.
T Consensus 1630 ~eRf~r--~-~v~vf~~ype~~SL~~Iyea~l~ 1659 (3164)
T COG5245 1630 YERFIR--K-PVFVFCCYPELASLRNIYEAVLM 1659 (3164)
T ss_pred HHHHhc--C-ceEEEecCcchhhHHHHHHHHHH
Confidence 244554 2 35688899999998888887764
No 264
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.83 E-value=0.00013 Score=77.38 Aligned_cols=64 Identities=20% Similarity=0.234 Sum_probs=48.6
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCChHHHHHHHHh------------------ccCCeEEEEe
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGNMELRNLLIA------------------TENKSILVVE 311 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l~~l~~~------------------~~~~sIl~iD 311 (490)
...++++|.+||||+++++++.... +.+++.++|..+.. ..+...+.. ..++++||||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 240 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEe
Confidence 4568999999999999999998664 57899999998743 444443321 1246789999
Q ss_pred ccchhh
Q 011254 312 DIDCSI 317 (490)
Q Consensus 312 diD~l~ 317 (490)
|||.+.
T Consensus 241 ei~~l~ 246 (441)
T PRK10365 241 EIGDIS 246 (441)
T ss_pred ccccCC
Confidence 999884
No 265
>PRK07261 topology modulation protein; Provisional
Probab=97.83 E-value=3.6e-05 Score=71.33 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=27.9
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
+++.||||+|||||++.|+..++.+++.++.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 7899999999999999999999988877653
No 266
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.82 E-value=1.6e-05 Score=72.89 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=30.7
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.+..++|+||||||||++++++|..+++++++.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4567999999999999999999999999998755
No 267
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.82 E-value=1.1e-05 Score=82.79 Aligned_cols=129 Identities=23% Similarity=0.279 Sum_probs=71.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccc----c-----C----ChHHHHHHHHhccCCeEEEEeccchhhhhhh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTN----L-----R----GNMELRNLLIATENKSILVVEDIDCSIELQD 321 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~----~-----~----~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~ 321 (490)
.+||.|.||||||.|.+.+++..-..+|..--+. + . ++-.+..-..-...+.|++|||+|.+-.
T Consensus 59 hiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~--- 135 (331)
T PF00493_consen 59 HILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKE--- 135 (331)
T ss_dssp -EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--C---
T ss_pred ceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccc---
Confidence 4899999999999999998877666665432111 1 1 1111111111124789999999998732
Q ss_pred hHhhhhhcccccccccccccccCCchhhHHHHHHHHhcc---------cccCCCCcEEEEEecCCCC-------------
Q 011254 322 RFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG---------LWSSCGDERIIIFTTNHKD------------- 379 (490)
Q Consensus 322 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg---------l~s~~~~~~iiI~TTN~~~------------- 379 (490)
.....|+..|+. +...-+-..-|++++|...
T Consensus 136 ---------------------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni 188 (331)
T PF00493_consen 136 ---------------------------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENI 188 (331)
T ss_dssp ---------------------------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT
T ss_pred ---------------------------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhc
Confidence 113345555542 1111011245889999765
Q ss_pred CCCccccCCCceeeEEEe-CCCCHHHHHHHHHHhhCC
Q 011254 380 RLDPAFLRPGRMDVHIHM-SYCTSCGFKMLASSYLGI 415 (490)
Q Consensus 380 ~LD~aLlRpGR~d~~I~~-~~p~~~~r~~L~~~~l~~ 415 (490)
.++++|+. |||..+.+ ..++.+.=..|+++.+..
T Consensus 189 ~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 189 NLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp -S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred ccchhhHh--hcCEEEEeccccccccccccceEEEec
Confidence 47889999 99988766 667766666677766654
No 268
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.80 E-value=0.00021 Score=74.59 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=39.0
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHh--c--cCcEEEEeccccCChHHHHHHHHhccCCeEEEEeccchh
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANY--L--NFDVYDLELTNLRGNMELRNLLIATENKSILVVEDIDCS 316 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~--l--~~~~~~l~~s~~~~~~~l~~l~~~~~~~sIl~iDdiD~l 316 (490)
...+++.||||||||+++.+++.+ + | .....+.+-.+-. .+.+.......+|+|||+..+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~-~~~lg~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS-TRQIGLVGRWDVVAFDEVATL 272 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH-HHHHhhhccCCEEEEEcCCCC
Confidence 357999999999999999999877 2 3 1111222111111 134444557789999999764
No 269
>PRK08118 topology modulation protein; Reviewed
Probab=97.76 E-value=4.6e-05 Score=70.35 Aligned_cols=32 Identities=34% Similarity=0.532 Sum_probs=29.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
-+++.||||+||||+|+.|++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999998873
No 270
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=7.2e-05 Score=77.45 Aligned_cols=103 Identities=22% Similarity=0.309 Sum_probs=61.8
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc----c-CcEEEEecccc----------------------CChHHHHHHHHhccCC
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL----N-FDVYDLELTNL----------------------RGNMELRNLLIATENK 305 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l----~-~~~~~l~~s~~----------------------~~~~~l~~l~~~~~~~ 305 (490)
+..++|.||+|+||||++..||..+ | ..+..+....+ .+..++...+....+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3458999999999999999999864 3 23433332222 2233455556666677
Q ss_pred eEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccc
Q 011254 306 SILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAF 385 (490)
Q Consensus 306 sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aL 385 (490)
.+|+||..... .....+...+..+.+... +-+.++|+-+|+..+.++..+
T Consensus 217 DlVLIDTaG~~-----------------------------~~d~~l~e~La~L~~~~~-~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 217 HMVLIDTIGMS-----------------------------QRDRTVSDQIAMLHGADT-PVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred CEEEEcCCCCC-----------------------------cccHHHHHHHHHHhccCC-CCeEEEEecCccChHHHHHHH
Confidence 88888887532 112235556666654322 122355556777777665443
No 271
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.73 E-value=0.00011 Score=77.78 Aligned_cols=89 Identities=17% Similarity=0.146 Sum_probs=63.6
Q ss_pred CccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCChH
Q 011254 217 TFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGNM 293 (490)
Q Consensus 217 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~ 293 (490)
.+..++|....-+++.+.+...- +-.-.+|++|++||||-.+|++|-..- +-||+.+||..+-.+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA-----------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVA-----------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 45677777777777766665322 223569999999999999999999876 4599999999984322
Q ss_pred HHHHHHHh-----------------ccCCeEEEEeccchh
Q 011254 294 ELRNLLIA-----------------TENKSILVVEDIDCS 316 (490)
Q Consensus 294 ~l~~l~~~-----------------~~~~sIl~iDdiD~l 316 (490)
-=.++|.. ..++..||||||..+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m 247 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM 247 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccC
Confidence 22234432 125689999999866
No 272
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.73 E-value=0.00014 Score=70.52 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=20.5
Q ss_pred eeeeCCCCCcHHHHHHHHHHhc
Q 011254 256 YLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l 277 (490)
+-|.||+|||||||.+.||+..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7789999999999999999876
No 273
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.71 E-value=8.7e-05 Score=81.76 Aligned_cols=135 Identities=22% Similarity=0.338 Sum_probs=74.4
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEec-cc---c-----CChHHHHHHHHhc-----cCCeEEEEeccchhhhhhh
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLEL-TN---L-----RGNMELRNLLIAT-----ENKSILVVEDIDCSIELQD 321 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~-s~---~-----~~~~~l~~l~~~~-----~~~sIl~iDdiD~l~~~~~ 321 (490)
+||.|-||||||.|.+.+++.+-..+|.--- ++ + .+.. .-++..++ ..++|.+|||+|.+-. .+
T Consensus 322 ILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~-tge~~LeaGALVlAD~Gv~cIDEfdKm~~-~d 399 (682)
T COG1241 322 ILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKV-TGEWVLEAGALVLADGGVCCIDEFDKMNE-ED 399 (682)
T ss_pred EEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccC-CCeEEEeCCEEEEecCCEEEEEeccCCCh-HH
Confidence 8999999999999999999998777765321 11 1 1110 11112222 3689999999998732 12
Q ss_pred hHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCC-------------CCCccccCC
Q 011254 322 RFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKD-------------RLDPAFLRP 388 (490)
Q Consensus 322 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~-------------~LD~aLlRp 388 (490)
+..-......+..+. .+.-+... +.+.|. |++++|.+. .|+++|+.
T Consensus 400 r~aihEaMEQQtIsI----------aKAGI~at------LnARcs----vLAAaNP~~Gryd~~~~~~enI~l~~~lLS- 458 (682)
T COG1241 400 RVAIHEAMEQQTISI----------AKAGITAT------LNARCS----VLAAANPKFGRYDPKKTVAENINLPAPLLS- 458 (682)
T ss_pred HHHHHHHHHhcEeee----------cccceeee------cchhhh----hhhhhCCCCCcCCCCCCHHHhcCCChhHHh-
Confidence 211111000000000 00001111 112232 777888654 47889999
Q ss_pred CceeeEEEe-CCCCHHHHHHHHHHhhC
Q 011254 389 GRMDVHIHM-SYCTSCGFKMLASSYLG 414 (490)
Q Consensus 389 GR~d~~I~~-~~p~~~~r~~L~~~~l~ 414 (490)
|||...-+ ..|+.+.=+.++.+.+.
T Consensus 459 -RFDLifvl~D~~d~~~D~~ia~hil~ 484 (682)
T COG1241 459 -RFDLIFVLKDDPDEEKDEEIAEHILD 484 (682)
T ss_pred -hCCeeEEecCCCCccchHHHHHHHHH
Confidence 99987655 56776654555554444
No 274
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.70 E-value=0.00015 Score=65.61 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=21.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
--+++.||||+||||++.-+|+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 347899999999999999999887
No 275
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.69 E-value=0.00058 Score=67.55 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=42.6
Q ss_pred EEEEecCC------------CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhh
Q 011254 370 IIIFTTNH------------KDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIE 429 (490)
Q Consensus 370 iiI~TTN~------------~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~ 429 (490)
++|++||+ |..++-.|+. |+ ..|...+.+.++.++|++..+..++..+.++.-.++.
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt 387 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLT 387 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHH
Confidence 67777775 5677888887 87 5677777788888999998887777777776655554
No 276
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.67 E-value=0.00025 Score=67.94 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=30.0
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
|++..+-++++||||||||+++..+|..+ +.+++.++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 55666669999999999999999999765 456666654
No 277
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.67 E-value=5.6e-05 Score=65.98 Aligned_cols=53 Identities=15% Similarity=0.121 Sum_probs=42.1
Q ss_pred cccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 219 DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 219 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
..|.|++-+++.|.+.+..++..+. -..|--+-|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3678999999999999999887541 1122334589999999999999999985
No 278
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.65 E-value=0.0004 Score=64.53 Aligned_cols=30 Identities=27% Similarity=0.249 Sum_probs=23.2
Q ss_pred eeeeCCCCCcHHHHHHHHHHhc---cCcEEEEe
Q 011254 256 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 285 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 285 (490)
+|++||||||||+|+..++.+. |.+++.++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6899999999999999887654 44554443
No 279
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00053 Score=71.55 Aligned_cols=26 Identities=42% Similarity=0.699 Sum_probs=23.1
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.++-++|+||+|+||||++..+|..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999875
No 280
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.63 E-value=0.0012 Score=68.90 Aligned_cols=86 Identities=26% Similarity=0.252 Sum_probs=55.9
Q ss_pred EEEecCCC---CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCC---------------------CCchHHHHH
Q 011254 371 IIFTTNHK---DRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITE---------------------HPLFLEVEG 426 (490)
Q Consensus 371 iI~TTN~~---~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~---------------------~~l~~~i~~ 426 (490)
|||.|+.. ..|..|| |.|.-..|.++.++.+.-+....+.|.... .....+++.
T Consensus 186 VIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~ 263 (431)
T PF10443_consen 186 VIFLTDDVSYSKPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDE 263 (431)
T ss_pred EEEECCCCchhhhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHH
Confidence 44545443 3455666 568889999999999998888888886531 124456666
Q ss_pred hhhccCCCHHHHHHHH---HcCCCHHHHHHHHHHH
Q 011254 427 LIEKAKVTPADVAEQL---MRNEVPEIALRELIQF 458 (490)
Q Consensus 427 l~~~~~~tpa~i~~~l---~~~~~~~~al~~l~~~ 458 (490)
.++..+----|+.-+. .....|+.|++++++-
T Consensus 264 ~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 264 CIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred HHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6665554444443332 2356888888887764
No 281
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.62 E-value=0.00032 Score=68.14 Aligned_cols=38 Identities=29% Similarity=0.315 Sum_probs=29.1
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
|.|.+..++++||||||||+|+.+++... |..++.+..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 66777779999999999999999997543 455544443
No 282
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.61 E-value=0.00056 Score=64.79 Aligned_cols=35 Identities=46% Similarity=0.613 Sum_probs=26.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTN 288 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~ 288 (490)
+..++.||||||||+++++++..+ +..++.+..+.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 567889999999999999988766 56777666554
No 283
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.61 E-value=0.00037 Score=64.53 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=44.5
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChH-----------------------HHHHHHHh-ccCCeEEEEe
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNM-----------------------ELRNLLIA-TENKSILVVE 311 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~-----------------------~l~~l~~~-~~~~sIl~iD 311 (490)
+|+.||||+|||++|..++..++.+++.+......... +|.+++.. ..++.+++||
T Consensus 4 ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlID 83 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLVD 83 (170)
T ss_pred EEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEeh
Confidence 78999999999999999999988887777655442221 24444444 3445678888
Q ss_pred ccchhh
Q 011254 312 DIDCSI 317 (490)
Q Consensus 312 diD~l~ 317 (490)
-+-.+.
T Consensus 84 ~Lt~~~ 89 (170)
T PRK05800 84 CLTTWV 89 (170)
T ss_pred hHHHHH
Confidence 877664
No 284
>PRK03839 putative kinase; Provisional
Probab=97.59 E-value=5e-05 Score=70.66 Aligned_cols=30 Identities=30% Similarity=0.597 Sum_probs=27.9
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
++|.|+||+||||+++.+|+.+++++++++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999997765
No 285
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.59 E-value=5.6e-05 Score=67.94 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=28.2
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
++|+||||+|||++++++|..+++++++.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 789999999999999999999999998776
No 286
>PF14516 AAA_35: AAA-like domain
Probab=97.58 E-value=0.003 Score=64.77 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=30.4
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecccc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNL 289 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~ 289 (490)
+.-+.++||..+|||||...+.+.+ |+..+.+++..+
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 3457899999999999999988766 777778877665
No 287
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.58 E-value=0.00028 Score=68.06 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=31.5
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT 287 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s 287 (490)
|++...-++++||||+|||+++..+|... +..++.++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56666678999999999999999999754 6677776665
No 288
>PRK13947 shikimate kinase; Provisional
Probab=97.57 E-value=5.9e-05 Score=69.33 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=29.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
.++|.|+||||||++++.+|+.+|+++++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 48999999999999999999999999998774
No 289
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.57 E-value=3.8e-05 Score=68.16 Aligned_cols=28 Identities=43% Similarity=0.688 Sum_probs=24.1
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~ 283 (490)
++++|||||||||+|+.++..+++.++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~ 29 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVIS 29 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEe
Confidence 6899999999999999999999844433
No 290
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.56 E-value=0.00077 Score=70.87 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=76.3
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc-CChHHHH---HHHHhcc--CCeEEEEeccchhhhhhhh
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL-RGNMELR---NLLIATE--NKSILVVEDIDCSIELQDR 322 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~-~~~~~l~---~l~~~~~--~~sIl~iDdiD~l~~~~~r 322 (490)
...++ -++++||-+||||++++-+...+.-.++.++..+. .....+. +.+.... .++.||||||.++-+
T Consensus 34 ~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~---- 108 (398)
T COG1373 34 DLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPD---- 108 (398)
T ss_pred ccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchh----
Confidence 33443 78999999999999998888877554333333332 2333332 2223332 458999999987732
Q ss_pred HhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCC-CccccCCCceeeEEEeCCCC
Q 011254 323 FAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRL-DPAFLRPGRMDVHIHMSYCT 401 (490)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~L-D~aLlRpGR~d~~I~~~~p~ 401 (490)
-...+..| .|. ... -++|.++|..-.+ ..+-.=||| ...+++.+.+
T Consensus 109 ------------------------W~~~lk~l---~d~----~~~-~v~itgsss~ll~~~~~~~L~GR-~~~~~l~PlS 155 (398)
T COG1373 109 ------------------------WERALKYL---YDR----GNL-DVLITGSSSSLLSKEISESLAGR-GKDLELYPLS 155 (398)
T ss_pred ------------------------HHHHHHHH---Hcc----ccc-eEEEECCchhhhccchhhhcCCC-ceeEEECCCC
Confidence 11122222 222 111 3555555543322 223334789 4788999999
Q ss_pred HHHHHH-------------HHHHhhCCC
Q 011254 402 SCGFKM-------------LASSYLGIT 416 (490)
Q Consensus 402 ~~~r~~-------------L~~~~l~~~ 416 (490)
..++.. ++..|+...
T Consensus 156 F~Efl~~~~~~~~~~~~~~~f~~Yl~~G 183 (398)
T COG1373 156 FREFLKLKGEEIEPSKLELLFEKYLETG 183 (398)
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHhC
Confidence 999854 677887654
No 291
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=97.55 E-value=0.0049 Score=57.71 Aligned_cols=138 Identities=12% Similarity=0.139 Sum_probs=93.5
Q ss_pred eEEEEeecCCCCCccHHHHHHHHHhCCCCCc-ccceeEeecCC----------------------CCCceEEeccCCCeE
Q 011254 59 LTLVINEYDDGLNQNVLFKAAKLYLEPRIPP-YVKRIKINLPN----------------------KETKISCSVEKDEEI 115 (490)
Q Consensus 59 ~ti~i~e~~~~~~~N~ly~a~~~YL~t~~~~-~~~rl~~~~~~----------------------~~~~~~~~~~~~~~v 115 (490)
.|+.|+.. +++|+.+-.+|+..... .++++.+.... +...+.+.|..| ..
T Consensus 27 ~sv~I~~~------D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G-~h 99 (187)
T PF08740_consen 27 SSVEIPSD------DEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG-TH 99 (187)
T ss_pred EEEEECCC------CHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-CE
Confidence 45666654 48999999999987544 45777776522 356789999999 77
Q ss_pred EEeecCeEEEEEEEEecCCCCccCCCCCCCCCCCCCceEEEEEecccchHHHHHHhHHHHHHhchhhhcccceEEEEeec
Q 011254 116 VDVFNGVQLKWRFSSKQVPTEMVHHPDHYNPVVKSEDRCFELSFHKKYKQVVMDSYIPHVLKQSKETSTQKKTLKLFTLR 195 (490)
Q Consensus 116 ~D~f~G~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~~~~~v~~~yl~~v~~~~~~i~~~~~~~~l~~~~ 195 (490)
...|+| +|+.+.+..++...+. ..+.+.+.++|+...+.++ +|..+|.+..+... +..+....||...
T Consensus 100 ~F~y~G---~~~~~~R~~~~~~~~~------~~~~~~e~l~l~~lg~s~~-~l~~ll~ear~~~~--~~~~~~t~Iy~~~ 167 (187)
T PF08740_consen 100 WFWYKG---RWFWFSRQRESNSYNS------WTGAPDETLTLSCLGRSPK-PLKDLLEEAREYYL--KKQKGKTTIYRAD 167 (187)
T ss_pred EEEECC---EEEEEEEEeccccccc------cCCCCceEEEEEEecCCHH-HHHHHHHHHHHHHH--HhcCCcEEEEeCC
Confidence 778999 6888888764433221 1134588999998887754 66665555544442 3344445689885
Q ss_pred cccccCCCCCcceecccCCCCCcccc
Q 011254 196 YDRMHGMRGDVWQSVNLDHPATFDTL 221 (490)
Q Consensus 196 ~~~~~~~~~~~w~~~~~~~~~~f~~l 221 (490)
.. +..|..+.-.+++++++|
T Consensus 168 ~~------~~~W~~~~~r~~RplsTV 187 (187)
T PF08740_consen 168 GS------EYRWRRVASRPKRPLSTV 187 (187)
T ss_pred CC------CCCCcCCCCcCCCCCCCC
Confidence 32 226999888888999886
No 292
>PRK00625 shikimate kinase; Provisional
Probab=97.55 E-value=6.3e-05 Score=69.87 Aligned_cols=31 Identities=32% Similarity=0.605 Sum_probs=29.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.++|.|+||+|||++++.+|+.+++++++++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 3789999999999999999999999999887
No 293
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.54 E-value=0.00039 Score=66.74 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=40.3
Q ss_pred CcceeeeCCCCCcHHHHHHHHHH-----hccCcE---------EEEeccccCC-----------h---HHHHHHHHhccC
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMAN-----YLNFDV---------YDLELTNLRG-----------N---MELRNLLIATEN 304 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~-----~l~~~~---------~~l~~s~~~~-----------~---~~l~~l~~~~~~ 304 (490)
++.++|.||.|+|||++.+.++. ..|..+ ++-..+.+.. . .++..++..+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 36799999999999999999983 233322 1111111111 1 233344445568
Q ss_pred CeEEEEeccchh
Q 011254 305 KSILVVEDIDCS 316 (490)
Q Consensus 305 ~sIl~iDdiD~l 316 (490)
+++++|||+..-
T Consensus 109 ~slvllDE~~~g 120 (213)
T cd03281 109 RSLVLIDEFGKG 120 (213)
T ss_pred CcEEEeccccCC
Confidence 999999998654
No 294
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.53 E-value=0.00022 Score=67.66 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=39.3
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHHHHhccCCeEEEEeccchhh
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNLLIATENKSILVVEDIDCSI 317 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l~~~~~~~sIl~iDdiD~l~ 317 (490)
|....--++|.|+.|+|||++++.|+.. ++.-........+.+ ..+...-|+.|||++.+.
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~~kd~~----~~l~~~~iveldEl~~~~ 108 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFDDKDFL----EQLQGKWIVELDELDGLS 108 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccCCCcHHH----HHHHHhHheeHHHHhhcc
Confidence 4555556789999999999999999766 221112222222222 233445789999998763
No 295
>PRK13949 shikimate kinase; Provisional
Probab=97.53 E-value=6.8e-05 Score=69.34 Aligned_cols=31 Identities=35% Similarity=0.499 Sum_probs=29.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.++|.||||+|||++++.+|+.+++++++++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999999877
No 296
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.53 E-value=0.00028 Score=67.07 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=42.1
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHh-----ccCcEE-----------EEeccc---c--------CChHHHHHHHHhcc--
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANY-----LNFDVY-----------DLELTN---L--------RGNMELRNLLIATE-- 303 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~-----l~~~~~-----------~l~~s~---~--------~~~~~l~~l~~~~~-- 303 (490)
.+.++|.||+|+||||+.++|+.. .|.++- ....+. + ....++.+++....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKG 104 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCC
Confidence 356899999999999999999953 344321 000000 0 01145677777777
Q ss_pred CCeEEEEeccch
Q 011254 304 NKSILVVEDIDC 315 (490)
Q Consensus 304 ~~sIl~iDdiD~ 315 (490)
+|.+|++||.-.
T Consensus 105 ~p~llllDEp~~ 116 (199)
T cd03283 105 EPVLFLLDEIFK 116 (199)
T ss_pred CCeEEEEecccC
Confidence 899999999754
No 297
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.52 E-value=0.00055 Score=66.53 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=25.8
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEe
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 285 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 285 (490)
|.+...-+++.||||||||+++..++..+ |..+..+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 45566679999999999999975554433 44554444
No 298
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.48 E-value=7.4e-05 Score=68.76 Aligned_cols=33 Identities=33% Similarity=0.416 Sum_probs=30.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
+.+.|.|++|+||||+.+++|+.|+++|++.|-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 468999999999999999999999999999873
No 299
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.48 E-value=0.00025 Score=74.50 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=66.8
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCC
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRG 291 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~ 291 (490)
...+..++|....-.++.+.++.-.. -.-.+||.|.+||||..+|+||-+.- +.|++.+||..+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~-----------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAK-----------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhc-----------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 45688999999888888887764322 23579999999999999999999876 57999999998832
Q ss_pred hHHHHHHHH-----------------hccCCeEEEEeccchh
Q 011254 292 NMELRNLLI-----------------ATENKSILVVEDIDCS 316 (490)
Q Consensus 292 ~~~l~~l~~-----------------~~~~~sIl~iDdiD~l 316 (490)
.--=.++|. +..+++-||+|||--+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel 329 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL 329 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccC
Confidence 111112332 1235789999999765
No 300
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.47 E-value=0.0008 Score=62.27 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=43.5
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCC-----------------------hHHHHHHHHhccCCeEEEEec
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRG-----------------------NMELRNLLIATENKSILVVED 312 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~-----------------------~~~l~~l~~~~~~~sIl~iDd 312 (490)
+|+.||||+|||++|..++...+.+++.+......+ ..+|.+.+...+.+.+|+||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 589999999999999999988777777776544321 123444443333456788888
Q ss_pred cchhhh
Q 011254 313 IDCSIE 318 (490)
Q Consensus 313 iD~l~~ 318 (490)
+.....
T Consensus 82 lt~~~~ 87 (169)
T cd00544 82 LTLWVT 87 (169)
T ss_pred HhHHHH
Confidence 776653
No 301
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.46 E-value=0.0002 Score=72.52 Aligned_cols=94 Identities=19% Similarity=0.298 Sum_probs=56.0
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhccCcE-EEEecccc--CChHHHHHH----------HHhc-cCCeEEEEeccchh
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDV-YDLELTNL--RGNMELRNL----------LIAT-ENKSILVVEDIDCS 316 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~-~~l~~s~~--~~~~~l~~l----------~~~~-~~~sIl~iDdiD~l 316 (490)
..++|+.||||-|+|||.|.-..-..+-..- ..+-...+ ..-.++..+ -.+. .+--||+|||+...
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~Vt 142 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEVT 142 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeeec
Confidence 4678999999999999999998877664322 11111111 000111111 1111 13469999998743
Q ss_pred hhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCC
Q 011254 317 IELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNH 377 (490)
Q Consensus 317 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~ 377 (490)
.-.....++.|++.+=. .++.+|+|+|.
T Consensus 143 ---------------------------DI~DAMiL~rL~~~Lf~------~GV~lvaTSN~ 170 (367)
T COG1485 143 ---------------------------DIADAMILGRLLEALFA------RGVVLVATSNT 170 (367)
T ss_pred ---------------------------ChHHHHHHHHHHHHHHH------CCcEEEEeCCC
Confidence 22335667777776532 34889999995
No 302
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.44 E-value=0.00096 Score=70.74 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=30.3
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecccc
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNL 289 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~ 289 (490)
.|.-++|+||||+||||++..+|..+ |..+..+++...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 46679999999999999999999887 556666665444
No 303
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.44 E-value=0.00041 Score=70.48 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=42.9
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecccc---------------------CChHHHHHHH---Hh
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNL---------------------RGNMELRNLL---IA 301 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~---------------------~~~~~l~~l~---~~ 301 (490)
|.+..+.+++|||||||||+|+..++... |..+..++.... .+..+...++ ..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 55666669999999999999987766543 444444432211 1111111222 22
Q ss_pred ccCCeEEEEeccchhhh
Q 011254 302 TENKSILVVEDIDCSIE 318 (490)
Q Consensus 302 ~~~~sIl~iDdiD~l~~ 318 (490)
.....+||||-+-++.+
T Consensus 131 ~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVP 147 (321)
T ss_pred ccCCcEEEEcchhhhcc
Confidence 24678999999988754
No 304
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.44 E-value=0.0011 Score=75.51 Aligned_cols=64 Identities=13% Similarity=0.309 Sum_probs=40.5
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHh-----ccC----------cEEEEeccccCC--------------hHHHHHHHHhcc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANY-----LNF----------DVYDLELTNLRG--------------NMELRNLLIATE 303 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~-----l~~----------~~~~l~~s~~~~--------------~~~l~~l~~~~~ 303 (490)
.+.++|.||.+.|||++.+.++-. +|+ ++++--++.+.. -.++..++..+.
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~ 406 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKAD 406 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCC
Confidence 356899999999999999998743 232 222211112111 123444555566
Q ss_pred CCeEEEEeccchh
Q 011254 304 NKSILVVEDIDCS 316 (490)
Q Consensus 304 ~~sIl~iDdiD~l 316 (490)
.+++++|||+-.-
T Consensus 407 ~~sLvLlDE~~~G 419 (782)
T PRK00409 407 KNSLVLFDELGAG 419 (782)
T ss_pred cCcEEEecCCCCC
Confidence 8999999998643
No 305
>PRK05973 replicative DNA helicase; Provisional
Probab=97.44 E-value=0.00085 Score=65.40 Aligned_cols=38 Identities=24% Similarity=0.028 Sum_probs=28.5
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
|.+...-+|+.|+||+|||+++-.+|... |.+++.+++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 45556669999999999999998887654 666555543
No 306
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.44 E-value=0.00092 Score=75.84 Aligned_cols=63 Identities=13% Similarity=0.309 Sum_probs=40.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc-----cC----------cEEEEeccccCC--------------hHHHHHHHHhccC
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL-----NF----------DVYDLELTNLRG--------------NMELRNLLIATEN 304 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l-----~~----------~~~~l~~s~~~~--------------~~~l~~l~~~~~~ 304 (490)
+.++|.||.|+|||++.+.++... |. ++++--.+.+.. ..++..++..+..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~ 402 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTE 402 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence 568999999999999999998762 21 111111111111 1234445555668
Q ss_pred CeEEEEeccchh
Q 011254 305 KSILVVEDIDCS 316 (490)
Q Consensus 305 ~sIl~iDdiD~l 316 (490)
+++|++||+-.-
T Consensus 403 ~sLvLlDE~g~G 414 (771)
T TIGR01069 403 NSLVLFDELGAG 414 (771)
T ss_pred CcEEEecCCCCC
Confidence 999999998643
No 307
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.43 E-value=0.0008 Score=65.11 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=23.5
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHh
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
|++...-+.|+||||||||+++..+|..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4566666899999999999999999854
No 308
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.43 E-value=0.00031 Score=64.94 Aligned_cols=22 Identities=36% Similarity=0.794 Sum_probs=20.0
Q ss_pred eeeeCCCCCcHHHHHHHHHHhc
Q 011254 256 YLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l 277 (490)
++|.|+||+||||+++.++..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 309
>PRK13948 shikimate kinase; Provisional
Probab=97.43 E-value=0.00014 Score=68.17 Aligned_cols=34 Identities=26% Similarity=0.162 Sum_probs=31.7
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.++.++|.|++|||||++++.+|+.+++++++.|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 4578999999999999999999999999999887
No 310
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.42 E-value=0.0006 Score=65.56 Aligned_cols=40 Identities=23% Similarity=0.217 Sum_probs=30.0
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---c------CcEEEEeccc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---N------FDVYDLELTN 288 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~------~~~~~l~~s~ 288 (490)
|.+...-+.|+||||+|||+|+..+|... + ..++.++...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 56666679999999999999999998653 2 4555555443
No 311
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.41 E-value=0.00012 Score=67.93 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=25.3
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
+++.||||+||||+++.||..+|+..+.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999998765543
No 312
>PRK14532 adenylate kinase; Provisional
Probab=97.39 E-value=0.00013 Score=68.28 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=26.4
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
++|.||||+||||+++.||..+|+.++++
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 78999999999999999999999877654
No 313
>PRK06217 hypothetical protein; Validated
Probab=97.39 E-value=0.00014 Score=68.01 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=28.2
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
|+|.|+||+||||++++||..+++++++++
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 799999999999999999999999988776
No 314
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.39 E-value=0.00031 Score=77.73 Aligned_cols=51 Identities=29% Similarity=0.414 Sum_probs=42.0
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF 279 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~ 279 (490)
+|..|++++|+++.++.|...+.. ++.++|+||||||||++++++|..+..
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 478899999999888877654431 247999999999999999999998753
No 315
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.39 E-value=0.002 Score=66.51 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.2
Q ss_pred eeeeCCCCCcHHHHHHHHHHhcc
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.|+.||||||||+|++.+|+.+.
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999999773
No 316
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.39 E-value=0.00014 Score=65.44 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=25.4
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
++|.||||+||||+++.++..++..+++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 68999999999999999999988766543
No 317
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.38 E-value=0.00053 Score=62.67 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=21.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+++.||+|||||+|.+++|+..
T Consensus 31 ~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhcc
Confidence 38999999999999999999865
No 318
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.38 E-value=0.00014 Score=66.43 Aligned_cols=28 Identities=32% Similarity=0.622 Sum_probs=24.6
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~ 283 (490)
++|.|||||||||+++++++.++..+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999866653
No 319
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.37 E-value=0.00014 Score=64.59 Aligned_cols=30 Identities=30% Similarity=0.497 Sum_probs=28.3
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
+.+.|+||||||++++.+|..+++++++.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999999999999999998887
No 320
>PRK14531 adenylate kinase; Provisional
Probab=97.37 E-value=0.00016 Score=67.58 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=27.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
+-++++||||+||||+++.+|..+|+..+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4589999999999999999999999887654
No 321
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.37 E-value=0.00074 Score=67.70 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=28.0
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc----c-CcEEEEeccc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL----N-FDVYDLELTN 288 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l----~-~~~~~l~~s~ 288 (490)
++.++|.||+|+||||++..+|.++ | ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3458899999999999999999876 3 5666665544
No 322
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.36 E-value=0.0015 Score=65.70 Aligned_cols=156 Identities=22% Similarity=0.231 Sum_probs=95.6
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHH---HHhccCcEEEEecccc-CC----
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAM---ANYLNFDVYDLELTNL-RG---- 291 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~ai---A~~l~~~~~~l~~s~~-~~---- 291 (490)
.+.|..+..+.+.+.++.-.-..+ ...+++.||-|+|||.++... +++.|-+++.+-+... .+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 455666667777666654333322 467999999999999876543 3367777776655432 11
Q ss_pred ----------------------hHHHHHHHHhcc-------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 292 ----------------------NMELRNLLIATE-------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 292 ----------------------~~~l~~l~~~~~-------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
...+..++.... .+.|.++||+|..++
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~------------------------ 151 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP------------------------ 151 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc------------------------
Confidence 112333332221 235666789997753
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCC---CccccCCCceeeE-EEeC-CCCHHHHHHHHHHhhCCC
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRL---DPAFLRPGRMDVH-IHMS-YCTSCGFKMLASSYLGIT 416 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~L---D~aLlRpGR~d~~-I~~~-~p~~~~r~~L~~~~l~~~ 416 (490)
..+.++ |-|.+|-..+. .-++.||+.|.+.+.+ ...+.. ||... |+|+ .....+...+.++.+...
T Consensus 152 ---h~rQtl--lYnlfDisqs~-r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~v~ 222 (408)
T KOG2228|consen 152 ---HSRQTL--LYNLFDISQSA-RAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLSVP 222 (408)
T ss_pred ---chhhHH--HHHHHHHHhhc-CCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhcCC
Confidence 223333 45666655443 3468888877776543 455666 88766 7764 446788999999998654
No 323
>PTZ00202 tuzin; Provisional
Probab=97.36 E-value=0.011 Score=62.01 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=54.6
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHH
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNME 294 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~ 294 (490)
|....+..|-++....|...+. ......++-+.|.||+|||||+|++.++..++...|.+++. ....-
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~----------~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr--g~eEl 325 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLR----------RLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR--GTEDT 325 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHh----------ccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC--CHHHH
Confidence 4446677787777777755543 12233456778999999999999999999999888888877 23455
Q ss_pred HHHHHHhcc
Q 011254 295 LRNLLIATE 303 (490)
Q Consensus 295 l~~l~~~~~ 303 (490)
|+.++....
T Consensus 326 Lr~LL~ALG 334 (550)
T PTZ00202 326 LRSVVKALG 334 (550)
T ss_pred HHHHHHHcC
Confidence 555555543
No 324
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.36 E-value=0.00011 Score=67.75 Aligned_cols=37 Identities=32% Similarity=0.490 Sum_probs=26.8
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCc---EEEEecccc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLELTNL 289 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~---~~~l~~s~~ 289 (490)
++.++|+||||+|||++++++...+..+ ++.+++...
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5789999999999999999999887544 777777665
No 325
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.34 E-value=0.0016 Score=67.59 Aligned_cols=24 Identities=33% Similarity=0.575 Sum_probs=21.7
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccC
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNF 279 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~ 279 (490)
.|++||||+|||+|++.|++....
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Confidence 799999999999999999997743
No 326
>PRK13946 shikimate kinase; Provisional
Probab=97.33 E-value=0.00017 Score=67.60 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=31.3
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
++.++|.|+||||||++++.+|+.+|+++++.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4679999999999999999999999999998873
No 327
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.00084 Score=60.90 Aligned_cols=26 Identities=42% Similarity=0.629 Sum_probs=22.9
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
..-+.|.||+|+|||+|+++|++.+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34588999999999999999999874
No 328
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.31 E-value=0.00053 Score=64.44 Aligned_cols=27 Identities=26% Similarity=0.376 Sum_probs=23.4
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
+.++-++|.||||+|||+|++++....
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 345668999999999999999998875
No 329
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.30 E-value=0.00019 Score=67.15 Aligned_cols=29 Identities=31% Similarity=0.552 Sum_probs=26.2
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
++|.||||+|||++++.||..+|+.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998877654
No 330
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.30 E-value=0.00022 Score=66.16 Aligned_cols=34 Identities=41% Similarity=0.690 Sum_probs=30.6
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
++.++|.||+|+|||++++.+|+.+++++++.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3468999999999999999999999999988874
No 331
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.29 E-value=0.00043 Score=73.84 Aligned_cols=69 Identities=25% Similarity=0.319 Sum_probs=45.6
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccC--------------------ChHHHHHHHHhc--c
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLR--------------------GNMELRNLLIAT--E 303 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~--------------------~~~~l~~l~~~~--~ 303 (490)
|++...-+||+||||+|||+|+..+|... +..++.++..+-. ....+..++... .
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 55666668999999999999999998765 5676666643310 011122232222 2
Q ss_pred CCeEEEEeccchhh
Q 011254 304 NKSILVVEDIDCSI 317 (490)
Q Consensus 304 ~~sIl~iDdiD~l~ 317 (490)
++.+||||.|..+.
T Consensus 156 ~~~lVVIDSIq~l~ 169 (446)
T PRK11823 156 KPDLVVIDSIQTMY 169 (446)
T ss_pred CCCEEEEechhhhc
Confidence 57789999988764
No 332
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.29 E-value=0.00043 Score=70.30 Aligned_cols=58 Identities=24% Similarity=0.277 Sum_probs=42.0
Q ss_pred cChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 223 MDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 223 g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
..++.++.+.+.++..+.... -...+..+.|.|+||||||++++.+|..+|+++++++
T Consensus 108 l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAGR-----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhhh-----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 345555556555555443221 1345567999999999999999999999999999655
No 333
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.26 E-value=0.00067 Score=67.33 Aligned_cols=90 Identities=21% Similarity=0.459 Sum_probs=56.8
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCc---EEEEec-ccc
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLEL-TNL 289 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~---~~~l~~-s~~ 289 (490)
.+.+++++.......+.+.+.+...+. .++.+|+.||+|+||||+++++..++... ++.++- .++
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~-----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVR-----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHH-----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccccHhhccCchhhHHHHHHHHhhccc-----------cceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 445889998777666666555543221 24679999999999999999999988433 444331 111
Q ss_pred -------------CChHHHHHHHHhc--cCCeEEEEeccc
Q 011254 290 -------------RGNMELRNLLIAT--ENKSILVVEDID 314 (490)
Q Consensus 290 -------------~~~~~l~~l~~~~--~~~sIl~iDdiD 314 (490)
.....+.+++..+ .+|.+|+|.||-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 1234556666654 368999999985
No 334
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.25 E-value=0.00026 Score=65.09 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=29.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
.++|.|+||||||++++.+|..+|+++++.+.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~ 35 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQ 35 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence 47899999999999999999999999998763
No 335
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.24 E-value=0.012 Score=68.26 Aligned_cols=33 Identities=33% Similarity=0.340 Sum_probs=26.2
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
.+-++++||+|.|||+++...+...+ ++.-+++
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 35589999999999999999887766 5554444
No 336
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.24 E-value=0.001 Score=59.04 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=24.5
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFD 280 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~ 280 (490)
+.-++|.|+.|+|||++++++++.++..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3458899999999999999999998753
No 337
>PRK06762 hypothetical protein; Provisional
Probab=97.23 E-value=0.00026 Score=64.78 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=27.7
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
++-++|.|+||+||||+|+.++..++..++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 456889999999999999999999866665555
No 338
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.007 Score=58.74 Aligned_cols=125 Identities=10% Similarity=0.055 Sum_probs=92.2
Q ss_pred CcceeeeCCCC-CcHHHHHHHHHHhcc---------CcEEEEecc-------ccCChHHHHHHHHhcc------CCeEEE
Q 011254 253 KRGYLLYGPPG-TGKSSLIAAMANYLN---------FDVYDLELT-------NLRGNMELRNLLIATE------NKSILV 309 (490)
Q Consensus 253 ~rg~LL~GPpG-tGKT~la~aiA~~l~---------~~~~~l~~s-------~~~~~~~l~~l~~~~~------~~sIl~ 309 (490)
...|||.|..+ +||..++.-++..+. -+++.+... ..-+-+++|++..... ..-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 35799999998 999999888877652 356655432 1234566777665543 356999
Q ss_pred EeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCC
Q 011254 310 VEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPG 389 (490)
Q Consensus 310 iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpG 389 (490)
|+++|.+- ...-+.||..++.. +...++|++|..++.|.|.++.
T Consensus 95 I~~ae~mt------------------------------~~AANALLKtLEEP----P~~t~fILit~~~~~LLpTIrS-- 138 (263)
T PRK06581 95 IYSAELMN------------------------------LNAANSCLKILEDA----PKNSYIFLITSRAASIISTIRS-- 138 (263)
T ss_pred EechHHhC------------------------------HHHHHHHHHhhcCC----CCCeEEEEEeCChhhCchhHhh--
Confidence 99999873 23457789998874 3458888999999999999998
Q ss_pred ceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 390 RMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 390 R~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
|+ .++.|+.|....-.++...++.
T Consensus 139 RC-q~i~~~~p~~~~~~e~~~~~~~ 162 (263)
T PRK06581 139 RC-FKINVRSSILHAYNELYSQFIQ 162 (263)
T ss_pred ce-EEEeCCCCCHHHHHHHHHHhcc
Confidence 76 7799999998777777665553
No 339
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.20 E-value=0.0011 Score=62.81 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=40.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh-----ccCcE--------------EEEecccc---------CChHHHHHHHHhccCC
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY-----LNFDV--------------YDLELTNL---------RGNMELRNLLIATENK 305 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~-----l~~~~--------------~~l~~s~~---------~~~~~l~~l~~~~~~~ 305 (490)
+-++|.||.|+|||++.++|+.- .|..+ ..+...+. ....++..++.....|
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 45899999999999999999932 22211 11111110 0122455555556789
Q ss_pred eEEEEeccchhh
Q 011254 306 SILVVEDIDCSI 317 (490)
Q Consensus 306 sIl~iDdiD~l~ 317 (490)
.++++||.-.-+
T Consensus 110 ~llllDEp~~gl 121 (202)
T cd03243 110 SLVLIDELGRGT 121 (202)
T ss_pred eEEEEecCCCCC
Confidence 999999996543
No 340
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.20 E-value=0.00066 Score=69.09 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=44.3
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccc----------------c-----CChHHHHHHHH---h
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTN----------------L-----RGNMELRNLLI---A 301 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~----------------~-----~~~~~l~~l~~---~ 301 (490)
|.|..+-+++|||||||||+|+-.++... +..+..++... + .+..++..++. .
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 45656668999999999999999877543 44555444322 1 11222222222 2
Q ss_pred ccCCeEEEEeccchhhh
Q 011254 302 TENKSILVVEDIDCSIE 318 (490)
Q Consensus 302 ~~~~sIl~iDdiD~l~~ 318 (490)
.....+||||-+-++.+
T Consensus 131 s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 131 SGAVDLIVVDSVAALVP 147 (325)
T ss_pred ccCCCEEEEcchHhhcc
Confidence 24678999999988864
No 341
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.20 E-value=0.0038 Score=65.05 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
-+++.||||||||+|++.|++.+.
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhc
Confidence 389999999999999999999864
No 342
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.19 E-value=0.0021 Score=66.92 Aligned_cols=69 Identities=22% Similarity=0.297 Sum_probs=44.9
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecccc--------------------CChHHHHHHHHhc--c
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNL--------------------RGNMELRNLLIAT--E 303 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~--------------------~~~~~l~~l~~~~--~ 303 (490)
|++...-+||+||||+|||+|+..+|..+ +.+++.++..+- .....+..++... .
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 45556668999999999999999998765 345665554321 0111222333222 3
Q ss_pred CCeEEEEeccchhh
Q 011254 304 NKSILVVEDIDCSI 317 (490)
Q Consensus 304 ~~sIl~iDdiD~l~ 317 (490)
++.+|+||.|..+.
T Consensus 158 ~~~lVVIDSIq~l~ 171 (372)
T cd01121 158 KPDLVIIDSIQTVY 171 (372)
T ss_pred CCcEEEEcchHHhh
Confidence 68899999998774
No 343
>PRK14530 adenylate kinase; Provisional
Probab=97.19 E-value=0.00032 Score=67.30 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=27.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
-++|.||||+||||+++.||..++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 489999999999999999999999887655
No 344
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.19 E-value=0.0023 Score=69.05 Aligned_cols=162 Identities=19% Similarity=0.289 Sum_probs=94.8
Q ss_pred ccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcc---eeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc-----
Q 011254 218 FDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRG---YLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL----- 289 (490)
Q Consensus 218 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg---~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~----- 289 (490)
|-+|.|++.+|.-|.-.+ +..-..+..-|.+ -|| +++.|-||||||-+.++.++.+-..+|..--+.-
T Consensus 344 ~PsIyGhe~VK~GilL~L---fGGv~K~a~eg~~-lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLT 419 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSL---FGGVHKSAGEGTS-LRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLT 419 (764)
T ss_pred CccccchHHHHhhHHHHH---hCCccccCCCCcc-ccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccce
Confidence 456677777777764322 1111111111222 234 8999999999999999999999888886432111
Q ss_pred ---CChHHHHHHHHhc-----cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhc--
Q 011254 290 ---RGNMELRNLLIAT-----ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFID-- 359 (490)
Q Consensus 290 ---~~~~~l~~l~~~~-----~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~id-- 359 (490)
..+..--....++ ....|-.|||+|.+-. ++.. .++.+|+
T Consensus 420 aaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~-~dqv-----------------------------AihEAMEQQ 469 (764)
T KOG0480|consen 420 AAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV-KDQV-----------------------------AIHEAMEQQ 469 (764)
T ss_pred EEEEecCCCCceeeecCcEEEccCceEEechhcccCh-HhHH-----------------------------HHHHHHHhh
Confidence 0011111111122 3678999999998832 1111 1223332
Q ss_pred -------ccccCCCCcEEEEEecCCCC-------------CCCccccCCCceeeE-EEeCCCCHHHHHHHHHHhhCC
Q 011254 360 -------GLWSSCGDERIIIFTTNHKD-------------RLDPAFLRPGRMDVH-IHMSYCTSCGFKMLASSYLGI 415 (490)
Q Consensus 360 -------gl~s~~~~~~iiI~TTN~~~-------------~LD~aLlRpGR~d~~-I~~~~p~~~~r~~L~~~~l~~ 415 (490)
|+..+-+...-||+++|+.. +++++++. |||.. |-+..|++..=..|.++.+..
T Consensus 470 tISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 470 TISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred eehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 21111112234778888643 46889999 99976 466999998877777777654
No 345
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.19 E-value=0.0003 Score=62.82 Aligned_cols=42 Identities=29% Similarity=0.499 Sum_probs=32.6
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHH
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELR 296 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~ 296 (490)
...+|+.|-||||||+++.++|..+++..+.+ +++..+.++.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i--sd~vkEn~l~ 48 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI--SDLVKENNLY 48 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh--hhHHhhhcch
Confidence 34699999999999999999999999888765 3443344443
No 346
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.19 E-value=0.0003 Score=67.11 Aligned_cols=22 Identities=45% Similarity=0.842 Sum_probs=18.0
Q ss_pred eeeeCCCCCcHHHHHHHHHHhc
Q 011254 256 YLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l 277 (490)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999998777777766
No 347
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.18 E-value=0.0017 Score=66.19 Aligned_cols=65 Identities=25% Similarity=0.349 Sum_probs=49.1
Q ss_pred cc-ccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-cCcEEEEecccc
Q 011254 218 FD-TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLELTNL 289 (490)
Q Consensus 218 f~-~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l~~s~~ 289 (490)
|+ ++.|.++..++|++.+...-. -+-.-++-++|.||+|+|||+|++.+-+.+ .+++|.+..+-+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~-------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm 125 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQ-------GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPM 125 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHh-------ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCcc
Confidence 55 889999999998887664322 223446778999999999999999999887 467777754444
No 348
>PF13479 AAA_24: AAA domain
Probab=97.17 E-value=0.0011 Score=63.58 Aligned_cols=61 Identities=26% Similarity=0.443 Sum_probs=39.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEecc-------------ccCChHHHHHHHHhc----cCCeEEEEeccchhh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELT-------------NLRGNMELRNLLIAT----ENKSILVVEDIDCSI 317 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s-------------~~~~~~~l~~l~~~~----~~~sIl~iDdiD~l~ 317 (490)
-+|||||||+|||+++..+-+-+ +++++.+ .+.+-.++.+.+... ..--.||||-++.+.
T Consensus 5 ~~lIyG~~G~GKTt~a~~~~k~l---~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~~ 81 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASLPKPL---FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWLE 81 (213)
T ss_pred EEEEECCCCCCHHHHHHhCCCeE---EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHHH
Confidence 48999999999999999882221 2233322 112345566655443 245799999998874
Q ss_pred h
Q 011254 318 E 318 (490)
Q Consensus 318 ~ 318 (490)
.
T Consensus 82 ~ 82 (213)
T PF13479_consen 82 D 82 (213)
T ss_pred H
Confidence 4
No 349
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.17 E-value=0.00033 Score=68.01 Aligned_cols=30 Identities=23% Similarity=0.567 Sum_probs=27.4
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
++|.||||+||||+++.+|..+|++++.++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 899999999999999999999998877654
No 350
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.16 E-value=0.00063 Score=70.62 Aligned_cols=104 Identities=18% Similarity=0.394 Sum_probs=65.2
Q ss_pred CceEEEEEecccchHHHHHHhHHHHHHhchhhh-------ccc------ceEEEEeeccccccCCCCCcceecccCC--C
Q 011254 151 EDRCFELSFHKKYKQVVMDSYIPHVLKQSKETS-------TQK------KTLKLFTLRYDRMHGMRGDVWQSVNLDH--P 215 (490)
Q Consensus 151 ~~~~~~l~f~~~~~~~v~~~yl~~v~~~~~~i~-------~~~------~~~~l~~~~~~~~~~~~~~~w~~~~~~~--~ 215 (490)
++....|. .+.-...-++.+...|++.++... ... +..++-...+. ....|.-....+ .
T Consensus 170 ~~k~v~l~-d~pl~~~ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlrn~RIvIarPP-----fSd~~EITavRPvvk 243 (604)
T COG1855 170 EWKLVRLS-DKPLTREELEEIAREIIERAKRDPDSFIEIDRPGATVVQLRNYRIVIARPP-----FSDRWEITAVRPVVK 243 (604)
T ss_pred cEEEEEcC-CccCCHHHHHHHHHHHHHHHhhCcCceEEEccCCceEEEeccEEEEEecCC-----CCCceEEEEEeeeEE
Confidence 45555554 222233456777788887775532 111 22222222111 233565433333 2
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.++++..+.+.++++|.+.- +|+|+.||||.||||+|+|+|.++.
T Consensus 244 ~~ledY~L~dkl~eRL~era------------------eGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 244 LSLEDYGLSDKLKERLEERA------------------EGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred echhhcCCCHHHHHHHHhhh------------------cceEEecCCCCChhHHHHHHHHHHH
Confidence 57899999999988886532 6999999999999999999999874
No 351
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.00033 Score=63.46 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=25.8
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~ 283 (490)
+-+.|||||||||+++-||.++|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 4578999999999999999999999976
No 352
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.16 E-value=0.00083 Score=63.68 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.7
Q ss_pred cceeeeCCCCCcHHHHHHHHH
Q 011254 254 RGYLLYGPPGTGKSSLIAAMA 274 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA 274 (490)
+.++|.||.|+|||+|.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 353
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.15 E-value=0.0018 Score=58.17 Aligned_cols=64 Identities=28% Similarity=0.371 Sum_probs=40.1
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCc---EE-----EEe-ccccCChHHHHHHHHh---ccCCeEEEEeccchhh
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFD---VY-----DLE-LTNLRGNMELRNLLIA---TENKSILVVEDIDCSI 317 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~---~~-----~l~-~s~~~~~~~l~~l~~~---~~~~sIl~iDdiD~l~ 317 (490)
...+.|.||+|+|||+|+++|++.+... ++ .+. ..++ +..+.+++... +.+|.|+++||-..-+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~l-S~G~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQL-SGGEKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccC-CHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 4458899999999999999999976311 10 111 1112 22333333222 3489999999987554
No 354
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.14 E-value=0.0013 Score=65.00 Aligned_cols=39 Identities=21% Similarity=0.117 Sum_probs=30.4
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT 287 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s 287 (490)
|++....+|++||||||||+++..+|... |.++..+++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 55666669999999999999999887643 5677777664
No 355
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.13 E-value=0.00039 Score=64.62 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=25.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
-+++.||||+||||+++.+|..+|+..+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478899999999999999999988765443
No 356
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.13 E-value=0.0015 Score=60.83 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=38.7
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCc--EEEEec-------ccc-CChHHHHHHHH---hccCCeEEEEeccchhh
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFD--VYDLEL-------TNL-RGNMELRNLLI---ATENKSILVVEDIDCSI 317 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~--~~~l~~-------s~~-~~~~~l~~l~~---~~~~~sIl~iDdiD~l~ 317 (490)
..-+.|.||.|+|||||++.|++.+..+ -+.++. ... -+..+-+++-. -+.+|.++++||.-.-+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 3457899999999999999999876211 011110 010 12222222221 13489999999986554
No 357
>PRK06547 hypothetical protein; Provisional
Probab=97.13 E-value=0.00045 Score=64.08 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=29.2
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.+.-|++.||+|||||++++.+|..++..++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3556889999999999999999999988877654
No 358
>PRK02496 adk adenylate kinase; Provisional
Probab=97.13 E-value=0.00035 Score=65.18 Aligned_cols=29 Identities=28% Similarity=0.566 Sum_probs=26.2
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
+++.||||+|||++++.||..++++.+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 78999999999999999999998877654
No 359
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.12 E-value=0.0014 Score=61.25 Aligned_cols=25 Identities=36% Similarity=0.719 Sum_probs=22.6
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
++-++|.||+|+||+++++.|....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3568999999999999999999986
No 360
>PRK08233 hypothetical protein; Provisional
Probab=97.11 E-value=0.0027 Score=58.66 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=24.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc-CcEEEEe
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN-FDVYDLE 285 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~-~~~~~l~ 285 (490)
-+.+.|+||+||||+++.||..++ ..++..+
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 467789999999999999999885 3444443
No 361
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0064 Score=63.29 Aligned_cols=58 Identities=21% Similarity=0.346 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 225 SDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 225 ~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
.++++.+.+.+...+..+..+ ...++-++|.||+|+||||++..||..+ |..+..+++
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 345555666555544432211 1224668999999999999999999877 344444443
No 362
>PF13245 AAA_19: Part of AAA domain
Probab=97.08 E-value=0.00071 Score=54.03 Aligned_cols=31 Identities=42% Similarity=0.694 Sum_probs=20.7
Q ss_pred eeeeCCCCCcHH-HHHHHHHHhc------cCcEEEEec
Q 011254 256 YLLYGPPGTGKS-SLIAAMANYL------NFDVYDLEL 286 (490)
Q Consensus 256 ~LL~GPpGtGKT-~la~aiA~~l------~~~~~~l~~ 286 (490)
+++.|||||||| +++++++..+ +..+..+..
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 455999999999 5566666555 344555544
No 363
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.08 E-value=0.0069 Score=64.24 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=27.0
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc-----cCcEEEEeccc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELTN 288 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~s~ 288 (490)
++.++|.||+|+||||++..||..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 3458899999999999999998754 34566555543
No 364
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.07 E-value=0.00039 Score=64.44 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=27.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
+-++|.||||+||||++++++..++.+++.++
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~ 34 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFG 34 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccC
Confidence 46899999999999999999999887765443
No 365
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.07 E-value=0.0019 Score=64.17 Aligned_cols=85 Identities=21% Similarity=0.393 Sum_probs=53.3
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcc-eeeeCCCCCcHHHHHHHHHHhcc---CcEEEEe-----
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLN---FDVYDLE----- 285 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~----- 285 (490)
+.+++++...++..+.+.+.+. -++| +++.||+|+||||+++++..++. ..++.++
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~---------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~ 120 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLE---------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEY 120 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh---------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCcee
Confidence 3568888887776665543332 1234 78999999999999999987773 3344442
Q ss_pred -cccc-----C--ChHHHHHHHHhc--cCCeEEEEeccc
Q 011254 286 -LTNL-----R--GNMELRNLLIAT--ENKSILVVEDID 314 (490)
Q Consensus 286 -~s~~-----~--~~~~l~~l~~~~--~~~sIl~iDdiD 314 (490)
+..+ . ....+..++..+ .+|.+|+|.||.
T Consensus 121 ~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 121 QIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred cCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 1111 1 112233444333 379999999985
No 366
>PRK14528 adenylate kinase; Provisional
Probab=97.07 E-value=0.00047 Score=64.74 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=26.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
-+++.||||+|||++++.+|..+|++++.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 378999999999999999999999887654
No 367
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.06 E-value=0.0016 Score=62.76 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=34.0
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc----cCcEEEEeccccCChHHHHHHHH
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELTNLRGNMELRNLLI 300 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s~~~~~~~l~~l~~ 300 (490)
|.|.+..+|+.||||||||+|+..++... |.+++.+.... +..++.+-+.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee--~~~~l~~~~~ 68 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE--PPEELIENMK 68 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS---HHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC--CHHHHHHHHH
Confidence 66777779999999999999999877443 77777777543 3344444443
No 368
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.04 E-value=0.00049 Score=65.75 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=26.0
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
+++.||||+|||++++.||..+|+..+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 68999999999999999999998877654
No 369
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.04 E-value=0.0048 Score=62.62 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=71.2
Q ss_pred cceecccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEE
Q 011254 206 VWQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVY 282 (490)
Q Consensus 206 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~ 282 (490)
....+.+++-..|+.+++....-+.++.....+- - ..-.+|+.|..||||-.+|+|.-... ..+|+
T Consensus 191 ~~~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k~A-------m----lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFl 259 (511)
T COG3283 191 QLQNVAAQDVSGFEQIVAVSPKMKHVVEQAQKLA-------M----LDAPLLITGETGTGKDLLAKACHLASPRHSKPFL 259 (511)
T ss_pred HHhhcccccccchHHHhhccHHHHHHHHHHHHhh-------c----cCCCeEEecCCCchHHHHHHHHhhcCcccCCCee
Confidence 4455667778899999988777666665544321 1 12347999999999999999866543 67999
Q ss_pred EEeccccCChHHHHHHHHhcc------------CCeEEEEeccchh
Q 011254 283 DLELTNLRGNMELRNLLIATE------------NKSILVVEDIDCS 316 (490)
Q Consensus 283 ~l~~s~~~~~~~l~~l~~~~~------------~~sIl~iDdiD~l 316 (490)
.++|..+-.+..=.++|..++ ++.-+|+|||--+
T Consensus 260 alNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEm 305 (511)
T COG3283 260 ALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEM 305 (511)
T ss_pred EeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhc
Confidence 999999855444445554443 4567899999655
No 370
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.02 E-value=0.0024 Score=58.48 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.2
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
..-+.|.||+|+|||+|.+.|++..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999876
No 371
>PRK09354 recA recombinase A; Provisional
Probab=97.00 E-value=0.0013 Score=67.47 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=42.5
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecccc---------------------CChHHHHHHH---Hh
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNL---------------------RGNMELRNLL---IA 301 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~---------------------~~~~~l~~l~---~~ 301 (490)
|.|..+-+++|||||||||+|+..++... |..++.++...- .+..+...++ ..
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45656668999999999999998776443 444443332221 1111221222 22
Q ss_pred ccCCeEEEEeccchhhh
Q 011254 302 TENKSILVVEDIDCSIE 318 (490)
Q Consensus 302 ~~~~sIl~iDdiD~l~~ 318 (490)
.....+||||-+-++..
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 24678999999988753
No 372
>PLN02200 adenylate kinase family protein
Probab=97.00 E-value=0.00063 Score=66.30 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=25.7
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEE
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVY 282 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 282 (490)
+.-+++.||||||||++++.||..+|+..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~hi 72 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHL 72 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 345789999999999999999999987643
No 373
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.00 E-value=0.0017 Score=64.14 Aligned_cols=67 Identities=22% Similarity=0.329 Sum_probs=54.4
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHH------hccCcEEEEeccccCChHHHHHHHHhc-----------------cCCeE
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMAN------YLNFDVYDLELTNLRGNMELRNLLIAT-----------------ENKSI 307 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~------~l~~~~~~l~~s~~~~~~~l~~l~~~~-----------------~~~sI 307 (490)
..+..+||.||.|.|||.|++.|-. .+.-+|+.++|..+.++..+..+|... ....+
T Consensus 206 rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggm 285 (531)
T COG4650 206 RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGM 285 (531)
T ss_pred hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCce
Confidence 3345699999999999999999874 357789999999998888887777543 24689
Q ss_pred EEEeccchhh
Q 011254 308 LVVEDIDCSI 317 (490)
Q Consensus 308 l~iDdiD~l~ 317 (490)
||+|||..+.
T Consensus 286 lfldeigelg 295 (531)
T COG4650 286 LFLDEIGELG 295 (531)
T ss_pred EehHhhhhcC
Confidence 9999998774
No 374
>PRK13764 ATPase; Provisional
Probab=97.00 E-value=0.0017 Score=71.17 Aligned_cols=62 Identities=23% Similarity=0.405 Sum_probs=39.9
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhcc---CcEEEEe------cc----cc---C-ChHHHHHHHHhccCCeEEEEeccch
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLE------LT----NL---R-GNMELRNLLIATENKSILVVEDIDC 315 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~------~s----~~---~-~~~~l~~l~~~~~~~sIl~iDdiD~ 315 (490)
++++|+.||||+||||+++|++.++. ..+..++ +. ++ . +...+...+. ..+|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~~~~~~~~~~lL-R~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLEGSMEETADILL-LVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeeccccHHHHHHHHH-hhCCCEEEECCCCC
Confidence 47899999999999999999998875 3333332 11 11 0 1112222221 34799999999864
No 375
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.00 E-value=0.00097 Score=52.03 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=23.6
Q ss_pred eeeeCCCCCcHHHHHHHHHHhc-cCcEEEEe
Q 011254 256 YLLYGPPGTGKSSLIAAMANYL-NFDVYDLE 285 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l-~~~~~~l~ 285 (490)
+.+.|+||+|||+++++++..+ +.++..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 5688999999999999999996 24444443
No 376
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.00 E-value=0.00059 Score=65.45 Aligned_cols=29 Identities=28% Similarity=0.498 Sum_probs=26.3
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
++++||||+|||++++.||..+++..+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 78999999999999999999999777664
No 377
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.00 E-value=0.0056 Score=66.09 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=36.5
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHh----ccCcEEEEeccccCChHHHHHHHH
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY----LNFDVYDLELTNLRGNMELRNLLI 300 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~----l~~~~~~l~~s~~~~~~~l~~l~~ 300 (490)
|.+..+.+|+.||||||||+|+..++.+ .|-+.+.+.+. .+..++.+...
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e--E~~~~l~~~~~ 70 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE--ESPQDIIKNAR 70 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe--cCHHHHHHHHH
Confidence 6777888999999999999999988543 25677777764 34455544443
No 378
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.98 E-value=0.00048 Score=63.16 Aligned_cols=29 Identities=28% Similarity=0.594 Sum_probs=26.6
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
+++.|.|||||||+++.++ .+|++++.++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 6899999999999999999 9999987765
No 379
>PRK04182 cytidylate kinase; Provisional
Probab=96.97 E-value=0.00064 Score=62.66 Aligned_cols=29 Identities=28% Similarity=0.551 Sum_probs=26.8
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
++|.|+||||||++++++|..+|+++++.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 68999999999999999999999988763
No 380
>PRK06696 uridine kinase; Validated
Probab=96.96 E-value=0.0025 Score=61.56 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=32.9
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCCh
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGN 292 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~ 292 (490)
+.-|.+.|+||+||||+|+.|+..+ |.+++.+.+.++...
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 4567889999999999999999998 677877777776433
No 381
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.95 E-value=0.002 Score=60.33 Aligned_cols=62 Identities=16% Similarity=0.285 Sum_probs=39.8
Q ss_pred eeeeCCCCCcHHHHHHHHHH-----hccCcE---------E-----EEecccc---------CChHHHHHHHHhccCCeE
Q 011254 256 YLLYGPPGTGKSSLIAAMAN-----YLNFDV---------Y-----DLELTNL---------RGNMELRNLLIATENKSI 307 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~-----~l~~~~---------~-----~l~~s~~---------~~~~~l~~l~~~~~~~sI 307 (490)
++|.||.|+|||++.+.++- ..|..+ + .+...+. ..-.++..++..+..|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999993 223222 1 1111111 012245556666678999
Q ss_pred EEEeccchhh
Q 011254 308 LVVEDIDCSI 317 (490)
Q Consensus 308 l~iDdiD~l~ 317 (490)
+++||+-.-.
T Consensus 82 lllDEp~~g~ 91 (185)
T smart00534 82 VLLDELGRGT 91 (185)
T ss_pred EEEecCCCCC
Confidence 9999996543
No 382
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.95 E-value=0.0027 Score=61.42 Aligned_cols=63 Identities=17% Similarity=0.311 Sum_probs=41.8
Q ss_pred CcceeeeCCCCCcHHHHHHHHHH-hc----cCc---------EE-----EEeccc-cC--------ChHHHHHHHHhccC
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMAN-YL----NFD---------VY-----DLELTN-LR--------GNMELRNLLIATEN 304 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~-~l----~~~---------~~-----~l~~s~-~~--------~~~~l~~l~~~~~~ 304 (490)
.+-++|.||.|+|||++.+.++. .+ |.. ++ .+...+ +. .-.++..++..+.+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 110 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTS 110 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCC
Confidence 34589999999999999999998 22 221 11 111110 10 12356677888889
Q ss_pred CeEEEEeccch
Q 011254 305 KSILVVEDIDC 315 (490)
Q Consensus 305 ~sIl~iDdiD~ 315 (490)
+++++|||+..
T Consensus 111 ~sLvllDE~~~ 121 (222)
T cd03287 111 RSLVILDELGR 121 (222)
T ss_pred CeEEEEccCCC
Confidence 99999999853
No 383
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.94 E-value=0.00072 Score=63.08 Aligned_cols=27 Identities=41% Similarity=0.723 Sum_probs=23.1
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVY 282 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~ 282 (490)
+++.||||+||||+|+.||+.++++-+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 789999999999999999999554443
No 384
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.93 E-value=0.0015 Score=62.24 Aligned_cols=62 Identities=19% Similarity=0.331 Sum_probs=39.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh-----ccCcE---------E-----EEeccc-cC--------ChHHHHHHHHhccCC
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY-----LNFDV---------Y-----DLELTN-LR--------GNMELRNLLIATENK 305 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~-----l~~~~---------~-----~l~~s~-~~--------~~~~l~~l~~~~~~~ 305 (490)
+-++|.||.|+|||++.++++.. +|..+ + .+...+ +. .-.++..++..+.++
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~ 109 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADGD 109 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCCC
Confidence 56899999999999999999743 33322 1 011110 00 012344555556689
Q ss_pred eEEEEeccch
Q 011254 306 SILVVEDIDC 315 (490)
Q Consensus 306 sIl~iDdiD~ 315 (490)
+++++||+..
T Consensus 110 ~lvllDE~~~ 119 (204)
T cd03282 110 SLVLIDELGR 119 (204)
T ss_pred cEEEeccccC
Confidence 9999999854
No 385
>PRK14527 adenylate kinase; Provisional
Probab=96.93 E-value=0.00062 Score=64.00 Aligned_cols=32 Identities=25% Similarity=0.513 Sum_probs=27.1
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
+.-++++||||+||||+++.+|..+++..+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 34589999999999999999999998766543
No 386
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0042 Score=70.46 Aligned_cols=143 Identities=17% Similarity=0.257 Sum_probs=89.0
Q ss_pred ccccccC-hhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----------cCcEEEEec
Q 011254 218 FDTLAMD-SDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLEL 286 (490)
Q Consensus 218 f~~l~g~-~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~l~~ 286 (490)
++.++|. ++-.+.+++.+. ..-++.-+|.|.||+|||.++.-+|+.. +..++.+++
T Consensus 185 ldPvigr~deeirRvi~iL~-------------Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILS-------------RKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHh-------------ccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 5666665 444444544443 2224677999999999999999999876 345666666
Q ss_pred cccC--------ChHHHHHHHHhc---cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHH
Q 011254 287 TNLR--------GNMELRNLLIAT---ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGML 355 (490)
Q Consensus 287 s~~~--------~~~~l~~l~~~~---~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 355 (490)
..+. -+..++.++..+ ..+.||+|||++.+.+.... ....-...+|
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~-----------------------~~~~d~~nlL 308 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN-----------------------YGAIDAANLL 308 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc-----------------------chHHHHHHhh
Confidence 5442 244566666653 46789999999999751111 0111222333
Q ss_pred HHhcccccCCCCcEEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHH
Q 011254 356 NFIDGLWSSCGDERIIIFTTNHKD-----RLDPAFLRPGRMDVHIHMSYCTSCG 404 (490)
Q Consensus 356 ~~idgl~s~~~~~~iiI~TTN~~~-----~LD~aLlRpGR~d~~I~~~~p~~~~ 404 (490)
..+-+ . ++.-+|+||..-+ .-||||-| ||+. +.++.|+.+.
T Consensus 309 kp~L~---r--g~l~~IGatT~e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~ 354 (898)
T KOG1051|consen 309 KPLLA---R--GGLWCIGATTLETYRKCIEKDPALER--RWQL-VLVPIPSVEN 354 (898)
T ss_pred HHHHh---c--CCeEEEecccHHHHHHHHhhCcchhh--Ccce-eEeccCcccc
Confidence 33221 1 2267787665322 23899999 9976 5788888665
No 387
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.92 E-value=0.0017 Score=61.50 Aligned_cols=34 Identities=32% Similarity=0.412 Sum_probs=25.5
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
|+-++|.||+|+||||.+.-||.++ +..+.-+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~ 37 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISA 37 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecC
Confidence 4568999999999999999999877 344444443
No 388
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.91 E-value=0.0031 Score=60.68 Aligned_cols=61 Identities=26% Similarity=0.402 Sum_probs=39.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHH-----hccCcE---------EEEeccccC-------Ch-------HHHHHHHHhccCC
Q 011254 254 RGYLLYGPPGTGKSSLIAAMAN-----YLNFDV---------YDLELTNLR-------GN-------MELRNLLIATENK 305 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~-----~l~~~~---------~~l~~s~~~-------~~-------~~l~~l~~~~~~~ 305 (490)
+-++|.||+|+|||++.+.+|. ..|..+ +.--.+.+. +. .++..++..+.++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 4579999999999999999974 223221 110011110 11 1356666667799
Q ss_pred eEEEEeccc
Q 011254 306 SILVVEDID 314 (490)
Q Consensus 306 sIl~iDdiD 314 (490)
++|++||..
T Consensus 111 ~llllDEp~ 119 (216)
T cd03284 111 SLVLLDEIG 119 (216)
T ss_pred eEEEEecCC
Confidence 999999984
No 389
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.91 E-value=0.001 Score=69.86 Aligned_cols=163 Identities=22% Similarity=0.240 Sum_probs=92.1
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCC-----cc---eeeeCCCCCcHHHHHHHHHHhccCcEEEEeccc--c
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWK-----RG---YLLYGPPGTGKSSLIAAMANYLNFDVYDLELTN--L 289 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~-----rg---~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~--~ 289 (490)
.|.|++++|+.+.-.+.- . .++.++ || ++|-|-||.-||-|.+.+.+-.-..+|..--.+ +
T Consensus 343 EIyGheDVKKaLLLlLVG---g------vd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGV 413 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVG---G------VDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGV 413 (721)
T ss_pred hhccchHHHHHHHHHhhC---C------CCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCcc
Confidence 456777777766544431 1 112222 22 899999999999999999998877777653222 1
Q ss_pred C-ChHHHHH-----H-HH----hccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCC--chhhHHHHHHH
Q 011254 290 R-GNMELRN-----L-LI----ATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQ--VPQVTLSGMLN 356 (490)
Q Consensus 290 ~-~~~~l~~-----l-~~----~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ls~LL~ 356 (490)
. +..-++. + +. -.....|-+|||+|.+.. .+|..-.. ++++.. ..+.-+..-||
T Consensus 414 GLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e-~DRtAIHE------------VMEQQTISIaKAGI~TtLN 480 (721)
T KOG0482|consen 414 GLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDE-SDRTAIHE------------VMEQQTISIAKAGINTTLN 480 (721)
T ss_pred ccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhh-hhhHHHHH------------HHHhhhhhhhhhccccchh
Confidence 0 1111110 0 00 023567899999999854 23332221 111111 01111111122
Q ss_pred HhcccccCCCCcEEEEEecCCCC-------------CCCccccCCCceeeEEEe-CCCCHHHHHHHHHHhhCCC
Q 011254 357 FIDGLWSSCGDERIIIFTTNHKD-------------RLDPAFLRPGRMDVHIHM-SYCTSCGFKMLASSYLGIT 416 (490)
Q Consensus 357 ~idgl~s~~~~~~iiI~TTN~~~-------------~LD~aLlRpGR~d~~I~~-~~p~~~~r~~L~~~~l~~~ 416 (490)
+ . .-|+++.|... .|+.||+. |||...-| ..|+.+.=..|+++..-+.
T Consensus 481 A------R----~sILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH 542 (721)
T KOG0482|consen 481 A------R----TSILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVH 542 (721)
T ss_pred h------h----HHhhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhh
Confidence 1 1 23666776421 58899999 99976554 7888888778888766554
No 390
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.91 E-value=0.0017 Score=55.84 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=20.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
++++++||+|+|||+++.+.+..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999888888766
No 391
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.91 E-value=0.0042 Score=58.97 Aligned_cols=36 Identities=31% Similarity=0.320 Sum_probs=27.4
Q ss_pred cHHHHHHhCC--CCCcceeeeCCCCCcHHHHHHHHHHh
Q 011254 241 RKEFYRNVGK--AWKRGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 241 ~~~~y~~~g~--~~~rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
+.+.-+++|. |.+.=+|+.|+.|||||-|.+.+|.=
T Consensus 14 ndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG 51 (235)
T COG2874 14 NDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYG 51 (235)
T ss_pred cHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHH
Confidence 4555667765 44444888999999999999999853
No 392
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.90 E-value=0.00059 Score=58.94 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.9
Q ss_pred eeeeCCCCCcHHHHHHHHHHhc
Q 011254 256 YLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l 277 (490)
|+|.|+||+||||+++.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999987
No 393
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.89 E-value=0.0029 Score=63.97 Aligned_cols=62 Identities=26% Similarity=0.381 Sum_probs=40.0
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhcc-----CcEEEEecc-cc-------------CChHHHHHHHHhc--cCCeEEEEe
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLN-----FDVYDLELT-NL-------------RGNMELRNLLIAT--ENKSILVVE 311 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~-----~~~~~l~~s-~~-------------~~~~~l~~l~~~~--~~~sIl~iD 311 (490)
++++|+.||+|+||||+++++++++. ..++.++-. ++ .....+..++..+ .+|.+|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 46899999999999999999998862 233333211 00 0111444555443 368888888
Q ss_pred ccc
Q 011254 312 DID 314 (490)
Q Consensus 312 diD 314 (490)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 874
No 394
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0035 Score=58.36 Aligned_cols=23 Identities=35% Similarity=0.697 Sum_probs=20.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+.+.||.|+|||||.|.||+-+
T Consensus 30 ~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 30 ALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred EEEEECCCCCcHHHHHHHHHccc
Confidence 37788999999999999999876
No 395
>PLN02199 shikimate kinase
Probab=96.89 E-value=0.0016 Score=65.20 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=31.4
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
++.++|.|++|||||++++.+|+.+|+++++.+.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~ 135 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT 135 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence 4679999999999999999999999999999873
No 396
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.89 E-value=0.003 Score=62.18 Aligned_cols=59 Identities=24% Similarity=0.408 Sum_probs=36.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCc---EEEE-eccccCChHHHHHHHHhccCCeEEEEeccch
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFD---VYDL-ELTNLRGNMELRNLLIATENKSILVVEDIDC 315 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~---~~~l-~~s~~~~~~~l~~l~~~~~~~sIl~iDdiD~ 315 (490)
.-+++.||+|||||+|++.|++.+... ++.+ -... ....++.+++... .+++|..+.|.
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~-er~~ev~el~~~I--~~~~v~~~~~~ 79 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLID-ERPEEVTDMQRSV--KGEVIASTFDE 79 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEcc-CCCccHHHHHHHh--ccEEEEecCCC
Confidence 448999999999999999999988653 2211 1111 1112344444443 55666666664
No 397
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.88 E-value=0.00063 Score=61.37 Aligned_cols=26 Identities=27% Similarity=0.545 Sum_probs=22.5
Q ss_pred eeCCCCCcHHHHHHHHHHhccCcEEE
Q 011254 258 LYGPPGTGKSSLIAAMANYLNFDVYD 283 (490)
Q Consensus 258 L~GPpGtGKT~la~aiA~~l~~~~~~ 283 (490)
|.||||+|||++++.||..+|+..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 57999999999999999998765444
No 398
>PRK01184 hypothetical protein; Provisional
Probab=96.88 E-value=0.00082 Score=62.62 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
-++|.||||+||||+++ ++.++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999887 889999888655
No 399
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.87 E-value=0.00088 Score=61.24 Aligned_cols=29 Identities=28% Similarity=0.612 Sum_probs=26.6
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
+.++|+||+|||++++.+|+.+|+++++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 68999999999999999999999998764
No 400
>PRK04040 adenylate kinase; Provisional
Probab=96.87 E-value=0.00089 Score=63.03 Aligned_cols=29 Identities=21% Similarity=0.534 Sum_probs=25.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc--cCcEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL--NFDVY 282 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l--~~~~~ 282 (490)
.-++++|+|||||||+++.++..+ ++.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 458899999999999999999999 55553
No 401
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.86 E-value=0.00077 Score=61.56 Aligned_cols=26 Identities=38% Similarity=0.653 Sum_probs=21.0
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVY 282 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~ 282 (490)
|.|.|+||||||||+++|+.. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 689999999999999999999 87766
No 402
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.86 E-value=0.002 Score=61.15 Aligned_cols=23 Identities=52% Similarity=0.943 Sum_probs=21.2
Q ss_pred eeeeCCCCCcHHHHHHHHHHhcc
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
+++.||+|+||||+++++++++.
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 68899999999999999998874
No 403
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=96.85 E-value=0.0045 Score=63.09 Aligned_cols=125 Identities=18% Similarity=0.194 Sum_probs=69.9
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhh
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKA 328 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~ 328 (490)
.+|.+|.+||-||-.|||||||+|+-+.+|-....+++.. +.|.==+.-+-..-.+++||+-.-.. .....
T Consensus 151 N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~----dkl~FELG~AiDQfmVvFEDVKGq~~-----~~~~L 221 (417)
T PF06431_consen 151 NIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQPS-----DNKDL 221 (417)
T ss_dssp TBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-T----TTHHHHHCCCTT-SEEEEEEE--SST-----TTTT-
T ss_pred CCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCCh----hhcchhhheeeceEEEEEEecCCCcC-----CCCCC
Confidence 4688899999999999999999999999998888888754 23322223344677899999842210 00000
Q ss_pred cccccccccccccccCCchhhHHHHHHHHhcccccCC-----CCcE-----EEEEecCCCCCCCccccCCCceeeEEEeC
Q 011254 329 TNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC-----GDER-----IIIFTTNHKDRLDPAFLRPGRMDVHIHMS 398 (490)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~-----~~~~-----iiI~TTN~~~~LD~aLlRpGR~d~~I~~~ 398 (490)
..+..-..|..|-..+||...-+ -+.+ --|.|.|. =.|+..+.- ||...+.|.
T Consensus 222 --------------p~G~G~~NLDNLRD~LDG~V~VNLErKH~NK~sQiFPPgIvTmNe-Y~iP~Tv~v--Rf~~~~~F~ 284 (417)
T PF06431_consen 222 --------------PPGQGMNNLDNLRDYLDGAVKVNLERKHQNKRSQIFPPGIVTMNE-YKIPQTVKV--RFCKVLDFR 284 (417)
T ss_dssp -----------------SHHHHHHTTHHHHH-SS-EEEECSSSEEEEE----EEEEESS--B--HHHHT--TEEEEEE--
T ss_pred --------------CCCCCcccchhhhhhccCceeechhhhhcccccccCCCceEeecc-ccCCcceee--eeEeeEecc
Confidence 02233456677777888753210 0011 24668886 346777777 999999886
Q ss_pred C
Q 011254 399 Y 399 (490)
Q Consensus 399 ~ 399 (490)
.
T Consensus 285 ~ 285 (417)
T PF06431_consen 285 P 285 (417)
T ss_dssp -
T ss_pred c
Confidence 3
No 404
>PRK04296 thymidine kinase; Provisional
Probab=96.85 E-value=0.0067 Score=57.13 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=23.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc---cCcEEEE
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL---NFDVYDL 284 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l---~~~~~~l 284 (490)
-.|++||||+|||+++..++..+ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999998888765 5555544
No 405
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.0024 Score=58.92 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=22.7
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
...-+.|.||+|+|||+|.++|++.+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34458999999999999999999986
No 406
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.83 E-value=0.032 Score=54.48 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=34.8
Q ss_pred cEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCC
Q 011254 368 ERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGI 415 (490)
Q Consensus 368 ~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~ 415 (490)
++-+|+++...-.|||.++. =++.++-++ -+...++.|++++...
T Consensus 128 ~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~-~s~~dl~~i~~~~~~~ 172 (241)
T PF04665_consen 128 NISIIFLSQSYFHLPPNIRS--NIDYFIIFN-NSKRDLENIYRNMNIK 172 (241)
T ss_pred ceEEEEEeeecccCCHHHhh--cceEEEEec-CcHHHHHHHHHhcccc
Confidence 36788888888899999865 678888776 5778888888877644
No 407
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.82 E-value=0.0021 Score=56.18 Aligned_cols=64 Identities=27% Similarity=0.326 Sum_probs=43.4
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccC--------------------cEEEEeccccCChHHHHHH--HHhccCCeEEEE
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNF--------------------DVYDLELTNLRGNMELRNL--LIATENKSILVV 310 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~--------------------~~~~l~~s~~~~~~~l~~l--~~~~~~~sIl~i 310 (490)
..-++|+|+=|+|||++++++|..+|. +++.+|+=.+.+..++..+ +......+|++|
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~I 94 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICVI 94 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEEEE
Confidence 345899999999999999999999863 4455666555555554432 223346888888
Q ss_pred eccchh
Q 011254 311 EDIDCS 316 (490)
Q Consensus 311 DdiD~l 316 (490)
|=.+.+
T Consensus 95 EW~e~~ 100 (123)
T PF02367_consen 95 EWPERL 100 (123)
T ss_dssp ESGGGG
T ss_pred ECcccc
Confidence 866655
No 408
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.80 E-value=0.0019 Score=64.26 Aligned_cols=63 Identities=22% Similarity=0.356 Sum_probs=35.3
Q ss_pred eeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecccc----------CChHHHHHHHHh-----ccCCeEEEEeccchhh
Q 011254 256 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNL----------RGNMELRNLLIA-----TENKSILVVEDIDCSI 317 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~----------~~~~~l~~l~~~-----~~~~sIl~iDdiD~l~ 317 (490)
++|+|.||+|||++|+.|+.++ +..+..++-..+ ..+..++..+.. .....||++|+.--+-
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYiK 83 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYIK 83 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---SH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchHH
Confidence 6899999999999999999986 566666653332 123344443332 2456899999987554
Q ss_pred h
Q 011254 318 E 318 (490)
Q Consensus 318 ~ 318 (490)
+
T Consensus 84 g 84 (270)
T PF08433_consen 84 G 84 (270)
T ss_dssp H
T ss_pred H
Confidence 3
No 409
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.79 E-value=0.0058 Score=56.69 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=22.3
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
..-+.|.||+|+|||+|+++|++.+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4458899999999999999999875
No 410
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.78 E-value=0.0011 Score=66.79 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=26.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc-cCcEEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL-NFDVYDL 284 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l 284 (490)
.-++|.|||||||||+++.++..+ +..+++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 457899999999999999999998 6655544
No 411
>PRK14526 adenylate kinase; Provisional
Probab=96.78 E-value=0.0011 Score=63.55 Aligned_cols=28 Identities=32% Similarity=0.704 Sum_probs=25.0
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~ 283 (490)
++|.||||+||||+++.+|..+++..+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999998876654
No 412
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.018 Score=60.50 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=26.7
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc----cCcEEEEeccc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELTN 288 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s~ 288 (490)
+.-++|.||+|+||||++..||..+ |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 3458899999999999999999754 44455555433
No 413
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.78 E-value=0.0059 Score=61.81 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=51.2
Q ss_pred ccccc-ChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEE----EeccccCChH
Q 011254 219 DTLAM-DSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD----LELTNLRGNM 293 (490)
Q Consensus 219 ~~l~g-~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~----l~~s~~~~~~ 293 (490)
+++.. ++++++.+.+.+-.-+.. ......-++|+|+.|+|||+++..|...+|-.... +.+.++.+.
T Consensus 48 ~~~~~~d~~~~~~l~~~lg~~L~~-------~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~- 119 (304)
T TIGR01613 48 LETFGGDNELIEYLQRVIGYSLTG-------NYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEH- 119 (304)
T ss_pred HHHhCCCHHHHHHHHHHHhHHhcC-------CCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCC-
Confidence 44443 444555555544433222 13456678999999999999999999988754422 222222110
Q ss_pred HHHHHHHhccCCeEEEEeccch
Q 011254 294 ELRNLLIATENKSILVVEDIDC 315 (490)
Q Consensus 294 ~l~~l~~~~~~~sIl~iDdiD~ 315 (490)
+ --+.....+-+++.+|++.
T Consensus 120 ~--f~~a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 120 R--FGLARLEGKRAVIGDEVQK 139 (304)
T ss_pred C--chhhhhcCCEEEEecCCCC
Confidence 1 1122344677889999863
No 414
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.78 E-value=0.0014 Score=59.26 Aligned_cols=30 Identities=37% Similarity=0.533 Sum_probs=25.6
Q ss_pred eeeeCCCCCcHHHHHHHHHHhc---cCcEEEEe
Q 011254 256 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 285 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 285 (490)
+++.|+||+|||++++.++..+ +.+.+.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6899999999999999999998 66665554
No 415
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.77 E-value=0.0034 Score=58.00 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=21.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.-+.|.||+|+|||+|.++|++.+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 348899999999999999999875
No 416
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.76 E-value=0.042 Score=52.92 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=26.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
-+.+.||+||||||+++.||..+++.+++-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~ 33 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDS 33 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeC
Confidence 467899999999999999999999887754
No 417
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.75 E-value=0.0011 Score=62.01 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=25.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 283 (490)
.-+.|.||+|+||||+++.|+..++.+++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 347899999999999999999998876544
No 418
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.74 E-value=0.0013 Score=62.37 Aligned_cols=35 Identities=37% Similarity=0.543 Sum_probs=27.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL 289 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 289 (490)
-++++||+|||||.++-++|+.+|.+++.+|--..
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~ 37 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC 37 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence 37999999999999999999999999999885544
No 419
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.72 E-value=0.002 Score=66.25 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=21.9
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHh
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.+|+|++|||.-|||||+|.--.-..
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~ 137 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDA 137 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhc
Confidence 45899999999999999998766543
No 420
>PTZ00035 Rad51 protein; Provisional
Probab=96.72 E-value=0.0083 Score=61.69 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=23.1
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHh
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
|++...-+.++||||||||+|+..+|..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 4555556889999999999999998854
No 421
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.69 E-value=0.0058 Score=56.90 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=19.8
Q ss_pred CcceeeeCCCCCcHHHHHHHHHH
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMAN 275 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~ 275 (490)
..-+.|.||.|+|||||.+++..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 34478999999999999999964
No 422
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.0066 Score=65.38 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=22.0
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
++..+.|.||+|+|||+++..||..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999754
No 423
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.68 E-value=0.0054 Score=59.12 Aligned_cols=63 Identities=22% Similarity=0.329 Sum_probs=42.2
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc-----cC---------cEEEEecccc------C--------ChHHHHHHHHhccC
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL-----NF---------DVYDLELTNL------R--------GNMELRNLLIATEN 304 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l-----~~---------~~~~l~~s~~------~--------~~~~l~~l~~~~~~ 304 (490)
.+.++|.||.|.|||++.+.++... |. ++++--++.+ . .-.++..++..+..
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 109 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATP 109 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCC
Confidence 4568999999999999999988642 32 1111111111 0 12356677888889
Q ss_pred CeEEEEeccch
Q 011254 305 KSILVVEDIDC 315 (490)
Q Consensus 305 ~sIl~iDdiD~ 315 (490)
+++++|||+-.
T Consensus 110 ~sLvLlDE~~~ 120 (218)
T cd03286 110 DSLVILDELGR 120 (218)
T ss_pred CeEEEEecccC
Confidence 99999999853
No 424
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.67 E-value=0.0056 Score=57.34 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=27.5
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
+.|+|++|||||++++.++...++++++.+.
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~D~ 32 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDADK 32 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeCCH
Confidence 6789999999999999999998788887763
No 425
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.67 E-value=0.0016 Score=63.85 Aligned_cols=31 Identities=42% Similarity=0.583 Sum_probs=26.1
Q ss_pred eeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 256 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
++|.|+||+||||+|+++|..+ +.+++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 6899999999999999999987 466666653
No 426
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.66 E-value=0.0037 Score=61.72 Aligned_cols=50 Identities=24% Similarity=0.199 Sum_probs=37.9
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCChHHHHHHHH
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGNMELRNLLI 300 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l~~l~~ 300 (490)
|.|..+.+|++|+||||||+++..++... |.+++.+...+ +..++.+.+.
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e--~~~~l~~~~~ 71 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE--SPEELLENAR 71 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC--CHHHHHHHHH
Confidence 56777789999999999999999888654 67788887665 3445554443
No 427
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.65 E-value=0.0039 Score=67.08 Aligned_cols=67 Identities=24% Similarity=0.354 Sum_probs=44.7
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEeccc--c------CChHHHHHHHHhc-----cCCeEEEEeccchhhhhhhh
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELTN--L------RGNMELRNLLIAT-----ENKSILVVEDIDCSIELQDR 322 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~--~------~~~~~l~~l~~~~-----~~~sIl~iDdiD~l~~~~~r 322 (490)
+||+|-||||||-+.+-+++-....++..-... + ....--+++-.++ ..+.|.+|||+|.+-+ ++|
T Consensus 485 vLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMnd-qDR 563 (854)
T KOG0477|consen 485 VLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMND-QDR 563 (854)
T ss_pred EEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcc-ccc
Confidence 899999999999999999998877776543221 1 0111112222222 3688999999999854 344
Q ss_pred H
Q 011254 323 F 323 (490)
Q Consensus 323 ~ 323 (490)
.
T Consensus 564 t 564 (854)
T KOG0477|consen 564 T 564 (854)
T ss_pred c
Confidence 3
No 428
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=96.63 E-value=0.0061 Score=65.63 Aligned_cols=90 Identities=24% Similarity=0.382 Sum_probs=54.2
Q ss_pred cccccc-ChhHHHHHHHHHHHHHHcHHHHHHhC-CCCCcceeeeCCCCCcHHHHHHHHHHhccC-cEEEEeccccCChHH
Q 011254 218 FDTLAM-DSDMKQMIMDDLERFVKRKEFYRNVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLNF-DVYDLELTNLRGNME 294 (490)
Q Consensus 218 f~~l~g-~~~~k~~i~~~l~~~l~~~~~y~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-~~~~l~~s~~~~~~~ 294 (490)
|+++.+ ++++..-+.+.+- |.-.| ..|...+.||||-|+|||+++..|.+-+|. ++-.+.++.+...+.
T Consensus 201 L~~~~~~d~el~~ll~~i~g--------~~l~g~~~~~k~~~l~G~G~nGKstf~~li~~llG~~n~~s~~~~~~~~~~~ 272 (517)
T COG3378 201 LDRVAGGDPELRNLLQRIIG--------ASLTGRVSEQKLFWLYGPGGNGKSTFVDLISNLLGRYNVTSAPLTDLEADDR 272 (517)
T ss_pred HHHhhcCCHHHHHHHHHHHh--------heecCcccceeEEEEEcCCCCChHHHHHHHHHHhccchhccccHHHhhhhcc
Confidence 566665 5555544444332 22222 347788999999999999999999999974 444555555432111
Q ss_pred HHHHHHhccCCeEEEEeccch
Q 011254 295 LRNLLIATENKSILVVEDIDC 315 (490)
Q Consensus 295 l~~l~~~~~~~sIl~iDdiD~ 315 (490)
=+.-+...-..+++..+|.+.
T Consensus 273 ~~~~~A~Lvg~~~v~~~E~~k 293 (517)
T COG3378 273 HPFGLAALVGKRLVTVSETEK 293 (517)
T ss_pred CcchHHHhhCceEEEecCccc
Confidence 111222233567777777764
No 429
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.63 E-value=0.0049 Score=56.37 Aligned_cols=65 Identities=25% Similarity=0.458 Sum_probs=40.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc---------------cCcEEEEe----cc--ccC-ChH---HHHHHHHhcc--CCe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL---------------NFDVYDLE----LT--NLR-GNM---ELRNLLIATE--NKS 306 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l---------------~~~~~~l~----~s--~~~-~~~---~l~~l~~~~~--~~s 306 (490)
+-.++.||.|+|||++.++++-.+ ++.+-..+ .. .+. +.. .+.+.+...+ +|.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ 101 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP 101 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCC
Confidence 468899999999999999987544 22222222 11 111 222 3444454443 789
Q ss_pred EEEEeccchhhh
Q 011254 307 ILVVEDIDCSIE 318 (490)
Q Consensus 307 Il~iDdiD~l~~ 318 (490)
++++||+..-.+
T Consensus 102 llllDEp~~gld 113 (162)
T cd03227 102 LYILDEIDRGLD 113 (162)
T ss_pred EEEEeCCCCCCC
Confidence 999999986543
No 430
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.63 E-value=0.0018 Score=70.90 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=31.9
Q ss_pred CCCCcc-eeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 250 KAWKRG-YLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 250 ~~~~rg-~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
+|.+++ ++|.|+||+||||+.+.+|+.++++++++|.
T Consensus 2 ~~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 2 KPTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred CCCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 444443 7899999999999999999999999999874
No 431
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.61 E-value=0.0067 Score=55.53 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=19.3
Q ss_pred cceeeeCCCCCcHHH-HHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSS-LIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~-la~aiA~~l~ 278 (490)
+.+++.||+|||||. ++..+...+.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhc
Confidence 578999999999999 5555555543
No 432
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.60 E-value=0.017 Score=58.87 Aligned_cols=34 Identities=24% Similarity=0.185 Sum_probs=27.1
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
+.-++|.||+|+||||+++.||..+ +..+..+++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4558899999999999999999987 455555554
No 433
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.60 E-value=0.013 Score=66.17 Aligned_cols=63 Identities=22% Similarity=0.258 Sum_probs=40.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc---c--CcEEEEecccc----------CChHHHHHHHHhc------------cCCe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL---N--FDVYDLELTNL----------RGNMELRNLLIAT------------ENKS 306 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l---~--~~~~~l~~s~~----------~~~~~l~~l~~~~------------~~~s 306 (490)
+-.+|.|+||||||++++++...+ + ..++.+-.+.. .....+++++... ....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 457899999999999999997765 3 45554443321 1123455555321 1346
Q ss_pred EEEEeccchh
Q 011254 307 ILVVEDIDCS 316 (490)
Q Consensus 307 Il~iDdiD~l 316 (490)
+|+|||+-.+
T Consensus 419 llIvDEaSMv 428 (720)
T TIGR01448 419 LLIVDESSMM 428 (720)
T ss_pred EEEEeccccC
Confidence 9999998655
No 434
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.60 E-value=0.0051 Score=56.73 Aligned_cols=37 Identities=30% Similarity=0.458 Sum_probs=32.1
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecccc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNL 289 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~ 289 (490)
+.-+.|.|.+|+||||+|.|++..| |+.+|.++...+
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 3457788999999999999999987 899999987665
No 435
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.57 E-value=0.0021 Score=60.95 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=25.3
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcE
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDV 281 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 281 (490)
+.-+++.|+||+|||++++.+|..+++.+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 34589999999999999999999987654
No 436
>PRK14529 adenylate kinase; Provisional
Probab=96.56 E-value=0.0016 Score=62.90 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=25.5
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~ 283 (490)
++|.||||+||||+++.||..++++.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 7899999999999999999999987753
No 437
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.55 E-value=0.054 Score=55.06 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=18.8
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCC
Q 011254 394 HIHMSYCTSCGFKMLASSYLGIT 416 (490)
Q Consensus 394 ~I~~~~p~~~~r~~L~~~~l~~~ 416 (490)
.|+++..+.++.+.+++.|....
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~ 280 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSG 280 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCC
Confidence 57889999999999999777543
No 438
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.55 E-value=0.022 Score=67.41 Aligned_cols=130 Identities=17% Similarity=0.189 Sum_probs=79.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHH--------------HH--HHHHhccCCeEEEEeccchhhh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNME--------------LR--NLLIATENKSILVVEDIDCSIE 318 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~--------------l~--~l~~~~~~~sIl~iDdiD~l~~ 318 (490)
.+|+-||..+|||+++.-+|...|-.|+.++-.+-....+ .+ -+.....++--|++||+.-...
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLApT 969 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAPT 969 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccCcH
Confidence 4899999999999999999999999999998654311111 11 1223344677899999864321
Q ss_pred hhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc-------CCCCcEEEEEecCCCC------CCCccc
Q 011254 319 LQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS-------SCGDERIIIFTTNHKD------RLDPAF 385 (490)
Q Consensus 319 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s-------~~~~~~iiI~TTN~~~------~LD~aL 385 (490)
..-..|+.||.---.+.- .+-.+..+++|-|.|. .|..|+
T Consensus 970 ---------------------------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAF 1022 (4600)
T COG5271 970 ---------------------------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAF 1022 (4600)
T ss_pred ---------------------------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHH
Confidence 011223333321111100 1113356667777765 367788
Q ss_pred cCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 386 LRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 386 lRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
+. || ..++|..-.+.+...|+..-..
T Consensus 1023 RN--RF-lE~hFddipedEle~ILh~rc~ 1048 (4600)
T COG5271 1023 RN--RF-LEMHFDDIPEDELEEILHGRCE 1048 (4600)
T ss_pred Hh--hh-HhhhcccCcHHHHHHHHhccCc
Confidence 77 88 5677766667777777764443
No 439
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.55 E-value=0.0081 Score=58.61 Aligned_cols=62 Identities=19% Similarity=0.395 Sum_probs=40.0
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc-----cCcE---------E-----EEecc-ccC-C-------hHHHHHHHHhccCC
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL-----NFDV---------Y-----DLELT-NLR-G-------NMELRNLLIATENK 305 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l-----~~~~---------~-----~l~~s-~~~-~-------~~~l~~l~~~~~~~ 305 (490)
+.++|.||..+|||++.+.+|-.. |..+ + .+... ++. + -.++..++..+.++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~ 123 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEK 123 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TT
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccc
Confidence 678999999999999999998643 3211 1 11111 111 1 23577788888899
Q ss_pred eEEEEeccch
Q 011254 306 SILVVEDIDC 315 (490)
Q Consensus 306 sIl~iDdiD~ 315 (490)
++|+|||+-.
T Consensus 124 sLvliDE~g~ 133 (235)
T PF00488_consen 124 SLVLIDELGR 133 (235)
T ss_dssp EEEEEESTTT
T ss_pred eeeecccccC
Confidence 9999999953
No 440
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.55 E-value=0.0022 Score=59.74 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=26.8
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
+.|+|+||+||||+++.+++ +|+++++.+.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~ 31 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDADK 31 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecCH
Confidence 67999999999999999999 8988887763
No 441
>PRK10867 signal recognition particle protein; Provisional
Probab=96.54 E-value=0.13 Score=54.74 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=31.0
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhc----cCcEEEEeccccC
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELTNLR 290 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s~~~ 290 (490)
.|.-+++.||||+||||++..+|.++ |..+..+++....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 35678999999999999999888765 5667777766553
No 442
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.53 E-value=0.0018 Score=58.20 Aligned_cols=46 Identities=22% Similarity=0.389 Sum_probs=35.7
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHH
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNL 298 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l 298 (490)
+.+-.+++-|++||||||++++++.+++++|++-+ ++....+..++
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgD--d~Hp~~NveKM 55 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGD--DLHPPANVEKM 55 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccccc--cCCCHHHHHHH
Confidence 45556888999999999999999999999987643 45555555443
No 443
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.53 E-value=0.0081 Score=55.46 Aligned_cols=24 Identities=42% Similarity=0.682 Sum_probs=21.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.-+.|.||+|+|||+|.+.||+.+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 348899999999999999999975
No 444
>PLN02674 adenylate kinase
Probab=96.52 E-value=0.0023 Score=62.63 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=26.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
..++|.||||+||+|+++.||..+|+..+..
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 4589999999999999999999988655443
No 445
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.012 Score=56.45 Aligned_cols=24 Identities=38% Similarity=0.753 Sum_probs=21.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
..|+.|||||||||+.+-||..+.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhh
Confidence 478999999999999999998763
No 446
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.49 E-value=0.01 Score=64.08 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=24.4
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
|.+....+|+.||||||||+|+..++...
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~ 287 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENA 287 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45666669999999999999999988755
No 447
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.48 E-value=0.0068 Score=61.81 Aligned_cols=62 Identities=19% Similarity=0.331 Sum_probs=40.0
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc-----cCcEEEEec-ccc------------CChHHHHHHHHhc--cCCeEEEEec
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLEL-TNL------------RGNMELRNLLIAT--ENKSILVVED 312 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~-s~~------------~~~~~l~~l~~~~--~~~sIl~iDd 312 (490)
+.++|+.||+|+||||+++|++.++ +..++.++- .++ ...-.+..++..+ .+|.+|++-|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4679999999999999999999886 223443331 111 1112344454443 3688888888
Q ss_pred cc
Q 011254 313 ID 314 (490)
Q Consensus 313 iD 314 (490)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 73
No 448
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.47 E-value=0.037 Score=60.20 Aligned_cols=39 Identities=21% Similarity=0.131 Sum_probs=28.9
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc----cCcEEEEecc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELT 287 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s 287 (490)
|.+...-+|++|+||||||+|+..++.+. |.+++.+.+.
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~e 69 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFE 69 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 56667779999999999999999876532 4555555443
No 449
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.47 E-value=0.0096 Score=64.22 Aligned_cols=87 Identities=22% Similarity=0.343 Sum_probs=55.8
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcc-eeeeCCCCCcHHHHHHHHHHhcc---CcEEEEec---
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLN---FDVYDLEL--- 286 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~~--- 286 (490)
.+.+|+++.+.++..+.+...+. .++| +|+.||+|+||||+..++.+++. .+++.++-
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~---------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE 281 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR---------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVE 281 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh---------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCee
Confidence 35689999888887766654332 2456 68999999999999999888774 34554431
Q ss_pred ---ccc-----CC--hHHHHHHHHhc--cCCeEEEEeccch
Q 011254 287 ---TNL-----RG--NMELRNLLIAT--ENKSILVVEDIDC 315 (490)
Q Consensus 287 ---s~~-----~~--~~~l~~l~~~~--~~~sIl~iDdiD~ 315 (490)
..+ .. .......+..+ .+|.||+|.||--
T Consensus 282 ~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 282 YQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred eecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 111 10 11223333332 3799999999853
No 450
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.46 E-value=0.02 Score=58.79 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=31.8
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccc
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTN 288 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~ 288 (490)
.|..+.|||-.|||||.+++.+-+.++.+...+++-+
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~e 65 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVE 65 (438)
T ss_pred cceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHH
Confidence 4566799999999999999999999988887777644
No 451
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.46 E-value=0.0032 Score=58.14 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=25.6
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEe
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 285 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 285 (490)
+.-+.|.|+||+|||++++++|..+ +.++..++
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id 39 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLD 39 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEc
Confidence 3457899999999999999999987 33444444
No 452
>PRK04328 hypothetical protein; Provisional
Probab=96.46 E-value=0.0092 Score=58.68 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=35.0
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHh---ccCcEEEEeccccCChHHHHHHHH
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY---LNFDVYDLELTNLRGNMELRNLLI 300 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~---l~~~~~~l~~s~~~~~~~l~~l~~ 300 (490)
|.+....+|++||||||||+|+..++.+ -|.+.+.++..+ +..++.+.+.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee--~~~~i~~~~~ 71 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE--HPVQVRRNMR 71 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC--CHHHHHHHHH
Confidence 5666777999999999999998876654 256777776544 3344544433
No 453
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.45 E-value=0.0061 Score=56.66 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.1
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
..-+.|.||+|+|||||++.|++.+
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999976
No 454
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.44 E-value=0.0035 Score=57.96 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.1
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
+.-++|.|+||+||||+++++++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999885
No 455
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.44 E-value=0.0038 Score=60.87 Aligned_cols=40 Identities=28% Similarity=0.258 Sum_probs=30.5
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHh---ccCcEEEEeccc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY---LNFDVYDLELTN 288 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~---l~~~~~~l~~s~ 288 (490)
|.+....+|++||||||||+|+..++.+ -|.+++.+.+..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 6777777999999999999999876654 256666666543
No 456
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.42 E-value=0.0048 Score=58.23 Aligned_cols=65 Identities=23% Similarity=0.396 Sum_probs=40.8
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEE---EEec---------ccc-CC--------hHHHHHHHHhccCCeEEEEeccc
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVY---DLEL---------TNL-RG--------NMELRNLLIATENKSILVVEDID 314 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~---~l~~---------s~~-~~--------~~~l~~l~~~~~~~sIl~iDdiD 314 (490)
++|.|+||+|||++++-+|+.|.-.+. .+.- .++ .- .....+++..+-+.-+++.|+..
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalkn~~VIvDdtN 83 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALKNYLVIVDDTN 83 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhcceEEEEeccc
Confidence 689999999999999999999843332 2221 000 00 11122255555567788899987
Q ss_pred hhhhhh
Q 011254 315 CSIELQ 320 (490)
Q Consensus 315 ~l~~~~ 320 (490)
-.-+.+
T Consensus 84 YyksmR 89 (261)
T COG4088 84 YYKSMR 89 (261)
T ss_pred HHHHHH
Confidence 765544
No 457
>PRK12338 hypothetical protein; Provisional
Probab=96.42 E-value=0.0026 Score=64.50 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=25.9
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcE
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDV 281 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 281 (490)
|.-+++.|+|||||||+++++|..+|+..
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 45689999999999999999999998754
No 458
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.41 E-value=0.0024 Score=59.17 Aligned_cols=25 Identities=28% Similarity=0.382 Sum_probs=22.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccC
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNF 279 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~ 279 (490)
-++|.||||+|||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3789999999999999999998754
No 459
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.41 E-value=0.012 Score=58.74 Aligned_cols=60 Identities=30% Similarity=0.562 Sum_probs=42.0
Q ss_pred cceecccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcc-eeeeCCCCCcHHHHHHHHHHhcc----Cc
Q 011254 206 VWQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLN----FD 280 (490)
Q Consensus 206 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~----~~ 280 (490)
..+-++ ....+|+.|...+-+++ +. ..++| +|..||.|+||||..+||-+++| .+
T Consensus 97 vlR~Ip-~~i~~~e~LglP~i~~~-~~------------------~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~H 156 (353)
T COG2805 97 VLRLIP-SKIPTLEELGLPPIVRE-LA------------------ESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKH 156 (353)
T ss_pred EEeccC-ccCCCHHHcCCCHHHHH-HH------------------hCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcc
Confidence 344454 45568999988765554 21 12577 56679999999999999999986 34
Q ss_pred EEEEe
Q 011254 281 VYDLE 285 (490)
Q Consensus 281 ~~~l~ 285 (490)
++.++
T Consensus 157 IlTIE 161 (353)
T COG2805 157 ILTIE 161 (353)
T ss_pred eEEec
Confidence 55543
No 460
>PHA00350 putative assembly protein
Probab=96.40 E-value=0.0073 Score=63.07 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=39.1
Q ss_pred eeeeCCCCCcHHHHHHH--HHHh--ccCcEEEEeccccC--------------------------ChHHHHHHHHhccCC
Q 011254 256 YLLYGPPGTGKSSLIAA--MANY--LNFDVYDLELTNLR--------------------------GNMELRNLLIATENK 305 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~a--iA~~--l~~~~~~l~~s~~~--------------------------~~~~l~~l~~~~~~~ 305 (490)
+|++|+||+|||..+-. |-.+ -|..++. ++..+. +-..+...+...+..
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T-NI~Gl~le~i~~~~~~~p~~~~li~i~~~~~~~~~~~~~~~~w~p~g 82 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT-NIPGLNLDVFEKVFGEFPSTARLIRIVDRNLEGFESMNRPFSWRPRG 82 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCCEEEE-CCCCCCHHHHHhhcccCcccceeEEeccccccchhhhccccccCCCC
Confidence 68899999999987765 3323 3665543 332221 001122222335578
Q ss_pred eEEEEeccchhhhhh
Q 011254 306 SILVVEDIDCSIELQ 320 (490)
Q Consensus 306 sIl~iDdiD~l~~~~ 320 (490)
++|||||+..+++.+
T Consensus 83 aLIViDEaq~~~p~r 97 (399)
T PHA00350 83 ALYVIDEAQMIFPKR 97 (399)
T ss_pred CEEEEECchhhcCCC
Confidence 999999999998743
No 461
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.40 E-value=0.0051 Score=57.24 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=23.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFD 280 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~ 280 (490)
-+.|.||+|+||||+++++++.++..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 47899999999999999999998874
No 462
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.40 E-value=0.0077 Score=67.84 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=41.8
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHh---ccCcEEEEecccc---------------------CChHHHHHHHHh---
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY---LNFDVYDLELTNL---------------------RGNMELRNLLIA--- 301 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~---l~~~~~~l~~s~~---------------------~~~~~l~~l~~~--- 301 (490)
|.+..+.++++||||||||+|+..++.. .|..+..++...- .....+..++..
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 4566666899999999999999654432 2334433332221 112222222222
Q ss_pred ccCCeEEEEeccchhhh
Q 011254 302 TENKSILVVEDIDCSIE 318 (490)
Q Consensus 302 ~~~~sIl~iDdiD~l~~ 318 (490)
...+.+||||-|..+..
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 23688999999998864
No 463
>PRK10436 hypothetical protein; Provisional
Probab=96.40 E-value=0.011 Score=63.41 Aligned_cols=85 Identities=22% Similarity=0.450 Sum_probs=55.2
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcc-eeeeCCCCCcHHHHHHHHHHhcc---CcEEEEe-----
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLN---FDVYDLE----- 285 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~----- 285 (490)
+.+|+++.+.+...+.+.+.+. .+.| +|+.||+|+||||+..++..+++ .+++.++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~---------------~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQ---------------QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHH---------------hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 3589999988877766655432 1345 78889999999999988877764 3455443
Q ss_pred -cccc-----C--ChHHHHHHHHhc--cCCeEEEEeccc
Q 011254 286 -LTNL-----R--GNMELRNLLIAT--ENKSILVVEDID 314 (490)
Q Consensus 286 -~s~~-----~--~~~~l~~l~~~~--~~~sIl~iDdiD 314 (490)
+..+ . ....+...+..+ ..|.||+|.||-
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 1111 1 112344444443 379999999985
No 464
>PRK10646 ADP-binding protein; Provisional
Probab=96.39 E-value=0.013 Score=53.14 Aligned_cols=62 Identities=27% Similarity=0.346 Sum_probs=40.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccC--------------------cEEEEeccccCChHHHHHH-HHhc-cCCeEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNF--------------------DVYDLELTNLRGNMELRNL-LIAT-ENKSILVVE 311 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~--------------------~~~~l~~s~~~~~~~l~~l-~~~~-~~~sIl~iD 311 (490)
.-++|.|+=|+|||++++++++.+|. ++|.+|+=.+.+..++..+ |.+. ....|++||
T Consensus 29 ~vi~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SPTFtlv~~Y~~~~~~l~H~DlYRL~~~~el~~lG~~e~~~~~~i~~IE 108 (153)
T PRK10646 29 TVIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTLVEPYTLDNLMVYHFDLYRLADPEELEFMGIRDYFANDAICLVE 108 (153)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCCCCCCCCEeeEEEeeCCCCCEEEEeeccCCCHHHHHHcchHHhhcCCCEEEEE
Confidence 35899999999999999999999974 2444454444444444332 2222 245677777
Q ss_pred ccch
Q 011254 312 DIDC 315 (490)
Q Consensus 312 diD~ 315 (490)
=.|.
T Consensus 109 W~e~ 112 (153)
T PRK10646 109 WPQQ 112 (153)
T ss_pred CCcc
Confidence 5543
No 465
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.39 E-value=0.0031 Score=57.47 Aligned_cols=35 Identities=37% Similarity=0.501 Sum_probs=29.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecccc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNL 289 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~ 289 (490)
-+.|.|.||+|||++|+++...| |.+++.++...+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 47889999999999999999887 788888886544
No 466
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.39 E-value=0.0068 Score=62.50 Aligned_cols=61 Identities=26% Similarity=0.511 Sum_probs=38.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc----CcEEEEecc-c--------------cC-ChHHHHHHHHhc--cCCeEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLELT-N--------------LR-GNMELRNLLIAT--ENKSILVVE 311 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~----~~~~~l~~s-~--------------~~-~~~~l~~l~~~~--~~~sIl~iD 311 (490)
.-+|+.||+|+||||+++++.+++. ..++.+.-. + +. ....+...+..+ .+|.+|+++
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 3478999999999999999998774 233333210 0 00 111233444332 379999999
Q ss_pred ccc
Q 011254 312 DID 314 (490)
Q Consensus 312 diD 314 (490)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 984
No 467
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.38 E-value=0.0059 Score=67.47 Aligned_cols=28 Identities=36% Similarity=0.599 Sum_probs=24.0
Q ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 250 KAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 250 ~~~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
++.+.-+.+.||+|+|||||++.+++.+
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445559999999999999999999976
No 468
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.37 E-value=0.0069 Score=64.81 Aligned_cols=38 Identities=32% Similarity=0.351 Sum_probs=28.9
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
|++...-+||+|+||+|||+|+..+|..+ +.+++.++.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~ 130 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSG 130 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 45555668999999999999999998765 345655554
No 469
>PLN02459 probable adenylate kinase
Probab=96.37 E-value=0.0033 Score=62.02 Aligned_cols=29 Identities=21% Similarity=0.474 Sum_probs=25.4
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
++|.||||+||||+++.+|..+++..+..
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~~~~is~ 60 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLGVPHIAT 60 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeC
Confidence 78889999999999999999988766543
No 470
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.37 E-value=0.0065 Score=62.56 Aligned_cols=60 Identities=25% Similarity=0.408 Sum_probs=42.6
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHHHHhccCCeEEEEeccc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNLLIATENKSILVVEDID 314 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l~~~~~~~sIl~iDdiD 314 (490)
|+|.+..++|||||+||||+++-.+-+.++-.++..--+ .+. =.+.-....-|-+|||+-
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns----~Sh--FWLqPL~d~Ki~llDDAT 317 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS----KSH--FWLQPLADAKIALLDDAT 317 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGT----TSC--GGGGGGCT-SSEEEEEE-
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCC----CCc--ccccchhcCcEEEEcCCc
Confidence 788889999999999999999999999998887653211 111 123333455688999974
No 471
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.36 E-value=0.0063 Score=60.60 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=23.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.++++.||||+|||||.+++++.+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5789999999999999999999874
No 472
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.34 E-value=0.0079 Score=61.01 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=29.8
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---------cCcEEEEeccc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELTN 288 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---------~~~~~~l~~s~ 288 (490)
|++...-++++||||||||+|+..+|... +-.++.++...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 45666668999999999999999998663 23566666544
No 473
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.34 E-value=0.014 Score=54.46 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=20.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
-..++||.|+|||++..||+-.++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~ 47 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLG 47 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 357899999999999999987653
No 474
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.32 E-value=0.02 Score=52.00 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.6
Q ss_pred eeeeCCCCCcHHHHHHHHHHhc
Q 011254 256 YLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l 277 (490)
++|.|+||+|||++++++++..
T Consensus 4 i~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999998543
No 475
>PLN02165 adenylate isopentenyltransferase
Probab=96.32 E-value=0.0033 Score=64.05 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=29.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTN 288 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~ 288 (490)
.-++|.||+|+|||+|+.+||..++..++..+--+
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~Q 78 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQ 78 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCChhe
Confidence 35889999999999999999999998877765443
No 476
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.32 E-value=0.0039 Score=47.66 Aligned_cols=22 Identities=45% Similarity=0.795 Sum_probs=20.2
Q ss_pred eeeeCCCCCcHHHHHHHHHHhc
Q 011254 256 YLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l 277 (490)
.+|+||.|+||||+.-||.-.+
T Consensus 26 tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998765
No 477
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.31 E-value=0.0028 Score=58.16 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=23.0
Q ss_pred eCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 259 YGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 259 ~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.|||||||||++++++..++..+++-+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d 27 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGD 27 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCc
Confidence 499999999999999999987665543
No 478
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.31 E-value=0.01 Score=60.60 Aligned_cols=25 Identities=36% Similarity=0.679 Sum_probs=22.7
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
++.+++.||+|+|||+++++++.++
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4679999999999999999999874
No 479
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.31 E-value=0.012 Score=66.20 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=23.8
Q ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 250 KAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 250 ~~~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
+++..-+-+.|++|||||||++.|.+.+
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444449999999999999999999876
No 480
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.29 E-value=0.0035 Score=59.35 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=28.0
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
+.++||+|+|||++++.++..+|+++++.+-
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i~~D~ 34 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPILDADI 34 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEeeCcH
Confidence 7899999999999999999988999987653
No 481
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.29 E-value=0.0036 Score=59.29 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=29.5
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhc-cCcEEEEecccc
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLELTNL 289 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l~~s~~ 289 (490)
..|.-+++.||||+|||+++..+...+ +-+++.++...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~ 52 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF 52 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH
Confidence 456779999999999999999999988 677777776655
No 482
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.27 E-value=0.024 Score=54.99 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=22.5
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
++-...++||.|+|||||++.++.+.
T Consensus 56 ~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 56 PGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred CCCcEEEECCCCCCHHHHHHHHhccc
Confidence 34457999999999999999999876
No 483
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.26 E-value=0.019 Score=51.47 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=19.2
Q ss_pred eeeeCCCCCcHHHHHHHHHHh
Q 011254 256 YLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~ 276 (490)
+++.|+||+|||+|+.++.+.
T Consensus 3 i~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999864
No 484
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.26 E-value=0.011 Score=60.14 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=36.0
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHh---------ccCcEEEEeccccCChHHHHHHHHh
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY---------LNFDVYDLELTNLRGNMELRNLLIA 301 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~---------l~~~~~~l~~s~~~~~~~l~~l~~~ 301 (490)
|++...-++++||||||||.|+..+|-. .+..++.++...--...++.++...
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~ 153 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAER 153 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 5666666899999999999999887742 2346666665443345566655443
No 485
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.25 E-value=0.012 Score=62.61 Aligned_cols=83 Identities=24% Similarity=0.395 Sum_probs=56.5
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcc-eeeeCCCCCcHHHHHHHHHHhccCc---EEEEe-----
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLNFD---VYDLE----- 285 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~~~---~~~l~----- 285 (490)
..+|+++++.+...+.+...+. -|.| +|+.||.|+|||+...++.++++-+ ++.++
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~---------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLN---------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHh---------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 4579999999998888776654 2457 5667999999999999999998643 33332
Q ss_pred -cccc---C--------ChHHHHHHHHhccCCeEEEEeccc
Q 011254 286 -LTNL---R--------GNMELRNLLIATENKSILVVEDID 314 (490)
Q Consensus 286 -~s~~---~--------~~~~l~~l~~~~~~~sIl~iDdiD 314 (490)
...+ . -..-|+.++. ..|.||.+.||-
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LR--qDPDvImVGEIR 337 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILR--QDPDVIMVGEIR 337 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhc--cCCCeEEEeccC
Confidence 1111 1 1222333332 379999999995
No 486
>PRK13808 adenylate kinase; Provisional
Probab=96.25 E-value=0.0035 Score=63.95 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=25.8
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
++|+||||+|||++++.||..+|+..+++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 78999999999999999999998766554
No 487
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.25 E-value=0.0067 Score=62.86 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.-+++.||+|+||||++++|++++
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 448899999999999999999887
No 488
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.24 E-value=0.013 Score=60.15 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.8
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
+..+|+.||+|+||||+++|+..++.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 56899999999999999999999874
No 489
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.23 E-value=0.03 Score=49.87 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.1
Q ss_pred eeeeCCCCCcHHHHHHHHHHh
Q 011254 256 YLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~ 276 (490)
+++.|+||+|||+|++++.+.
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 688999999999999999863
No 490
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.23 E-value=0.0048 Score=57.54 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=27.4
Q ss_pred eeeeCCCCCcHHHHHHHHHHhcc---CcEEEEecccc
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLN---FDVYDLELTNL 289 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~~s~~ 289 (490)
+.+.|+||||||++++.|+..++ .++..+++.++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 57899999999999999999873 55666665554
No 491
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.22 E-value=0.01 Score=59.14 Aligned_cols=37 Identities=30% Similarity=0.253 Sum_probs=28.8
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccc
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTN 288 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~ 288 (490)
.++-++|.||||+||||++..+|..+ |..+.-+++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 34668888999999999999999877 55666555443
No 492
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.22 E-value=0.0091 Score=52.74 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=19.4
Q ss_pred eeeeCCCCCcHHHHHHHHHHh
Q 011254 256 YLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~ 276 (490)
+.|.||+|+|||+|++++.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 579999999999999999876
No 493
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.014 Score=57.30 Aligned_cols=23 Identities=43% Similarity=0.641 Sum_probs=20.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+-|.||.|+|||||+++|.+.+
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36789999999999999999965
No 494
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.21 E-value=0.0055 Score=58.33 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=26.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc-CcEEEEecc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN-FDVYDLELT 287 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~-~~~~~l~~s 287 (490)
.-+.|.||||||||||+++|+..++ ..+..++..
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D 41 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD 41 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCC
Confidence 4578999999999999999999983 334444443
No 495
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.21 E-value=0.0045 Score=57.98 Aligned_cols=26 Identities=27% Similarity=0.682 Sum_probs=23.2
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
+..+++.||+|+||||+++++++.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45689999999999999999998763
No 496
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.19 E-value=0.012 Score=65.08 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=23.5
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
++..-+.+.||+|+|||||++.|++.+
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 344559999999999999999999876
No 497
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.19 E-value=0.015 Score=64.08 Aligned_cols=85 Identities=22% Similarity=0.429 Sum_probs=55.3
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcc-eeeeCCCCCcHHHHHHHHHHhcc---CcEEEEecc----
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLN---FDVYDLELT---- 287 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~~s---- 287 (490)
.+|+++++.++..+.+.+.+.. ++| +|+.||+|+||||+..++.++++ .+++.++-.
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~ 357 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEIN 357 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceec
Confidence 5789999988877766554431 345 68899999999999998888874 234433211
Q ss_pred --cc-----C--ChHHHHHHHHhc--cCCeEEEEeccch
Q 011254 288 --NL-----R--GNMELRNLLIAT--ENKSILVVEDIDC 315 (490)
Q Consensus 288 --~~-----~--~~~~l~~l~~~~--~~~sIl~iDdiD~ 315 (490)
.+ . ........+..+ .+|.||++-||--
T Consensus 358 ~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 358 LPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred CCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 11 1 112334444433 3799999999963
No 498
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.011 Score=61.32 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=28.8
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecccc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNL 289 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~ 289 (490)
++-++|.||+|+||||++..||..+ +..+..+++...
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 4558899999999999999999876 555655555444
No 499
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.16 E-value=0.013 Score=66.54 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=41.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccC----------ChHHHHHHHHh-------ccCCeEEEEecc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLR----------GNMELRNLLIA-------TENKSILVVEDI 313 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~----------~~~~l~~l~~~-------~~~~sIl~iDdi 313 (490)
+-++|.|+||||||++++++...+ |+.+..+-.+... ....+..++.. .....+|+|||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 457899999999999999997654 6677766544430 11223444321 124589999998
Q ss_pred chh
Q 011254 314 DCS 316 (490)
Q Consensus 314 D~l 316 (490)
-.+
T Consensus 449 sMv 451 (744)
T TIGR02768 449 GMV 451 (744)
T ss_pred ccC
Confidence 654
No 500
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.16 E-value=0.13 Score=50.21 Aligned_cols=159 Identities=21% Similarity=0.228 Sum_probs=84.9
Q ss_pred CCCcc-eeeeCCCCCcHHHHHHHHHHhccCcEE---EEecccc-------------CC-------------hHHHHHHHH
Q 011254 251 AWKRG-YLLYGPPGTGKSSLIAAMANYLNFDVY---DLELTNL-------------RG-------------NMELRNLLI 300 (490)
Q Consensus 251 ~~~rg-~LL~GPpGtGKT~la~aiA~~l~~~~~---~l~~s~~-------------~~-------------~~~l~~l~~ 300 (490)
...+| +.++|+-|||||.+.+|+...++-+=+ .++-..+ .+ ...|..++.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~ 127 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVK 127 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Confidence 33455 568899999999999988877753322 2221111 11 112333444
Q ss_pred hccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCC
Q 011254 301 ATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDR 380 (490)
Q Consensus 301 ~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~ 380 (490)
+-.+|.++++||.+.+.. ..-..+.-|.|.-++... ...+++|+ +| .
T Consensus 128 ~g~r~v~l~vdEah~L~~---------------------------~~le~Lrll~nl~~~~~~--~l~ivL~G---qp-~ 174 (269)
T COG3267 128 KGKRPVVLMVDEAHDLND---------------------------SALEALRLLTNLEEDSSK--LLSIVLIG---QP-K 174 (269)
T ss_pred hCCCCeEEeehhHhhhCh---------------------------hHHHHHHHHHhhcccccC--ceeeeecC---Cc-c
Confidence 445679999999987743 001112222232222111 11234443 22 2
Q ss_pred CCccccCC------CceeeEEEeCCCCHHHHHHHHHHhhCCC--CCCchH-H-HHHhhhccCCCHHHHHHHH
Q 011254 381 LDPAFLRP------GRMDVHIHMSYCTSCGFKMLASSYLGIT--EHPLFL-E-VEGLIEKAKVTPADVAEQL 442 (490)
Q Consensus 381 LD~aLlRp------GR~d~~I~~~~p~~~~r~~L~~~~l~~~--~~~l~~-~-i~~l~~~~~~tpa~i~~~l 442 (490)
|.|.+.+| -|++..|++++.+.++-...++..|+.. ..+++. + +..+.....-.|..|.+++
T Consensus 175 L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 175 LRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred cchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 33322211 2899889999999997777777666543 334432 2 3333333334777776664
Done!